Citrus Sinensis ID: 037713
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 610 | 2.2.26 [Sep-21-2011] | |||||||
| O23266 | 612 | Pentatricopeptide repeat- | yes | no | 1.0 | 0.996 | 0.671 | 0.0 | |
| Q9SY02 | 781 | Pentatricopeptide repeat- | no | no | 0.916 | 0.715 | 0.409 | 1e-132 | |
| Q9CAA8 | 743 | Putative pentatricopeptid | no | no | 0.908 | 0.745 | 0.407 | 1e-130 | |
| Q9SHZ8 | 786 | Pentatricopeptide repeat- | no | no | 0.965 | 0.749 | 0.389 | 1e-129 | |
| O23169 | 691 | Pentatricopeptide repeat- | no | no | 0.880 | 0.777 | 0.384 | 1e-127 | |
| O23337 | 722 | Pentatricopeptide repeat- | no | no | 0.955 | 0.807 | 0.374 | 1e-127 | |
| Q9SMZ2 | 990 | Pentatricopeptide repeat- | no | no | 0.908 | 0.559 | 0.397 | 1e-125 | |
| Q9FRI5 | 790 | Pentatricopeptide repeat- | no | no | 0.955 | 0.737 | 0.375 | 1e-124 | |
| O82380 | 738 | Pentatricopeptide repeat- | no | no | 0.962 | 0.795 | 0.368 | 1e-124 | |
| Q9SVP7 | 1064 | Pentatricopeptide repeat- | no | no | 0.927 | 0.531 | 0.383 | 1e-123 |
| >sp|O23266|PP308_ARATH Pentatricopeptide repeat-containing protein At4g14050, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H13 PE=2 SV=3 | Back alignment and function desciption |
|---|
Score = 872 bits (2252), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/612 (67%), Positives = 510/612 (83%), Gaps = 2/612 (0%)
Query: 1 MQISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHL 60
M I HYLH+L++CAR++ T K LHA I+KLG+ Q PL NTL++ YGKC +A +
Sbjct: 1 MLIPHYLHQLQLCARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQV 60
Query: 61 LEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGA 120
+EMP RDH++WAS+LTA NQANL KT+S+FS++ + L+PD FVF++LVKAC +LG+
Sbjct: 61 FDEMPHRDHIAWASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGS 120
Query: 121 TRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSA 180
G+QVH F++S + +D+VVKSSLVDMYAKCGL N+A+AVFDSI++KN++SWTAM+S
Sbjct: 121 IDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSG 180
Query: 181 YARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLV 240
YA+SGRK++A+E+F PV+NL+ WTAL+SG VQS ++AF F EMRRE VDI+DPLV
Sbjct: 181 YAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLV 240
Query: 241 LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR 300
LSSIVGACAN A G+Q+HGLVIALG++SC+FISNA++DMYAKCSD+IAAKDIF RMR
Sbjct: 241 LSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMR 300
Query: 301 RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK 360
+DVVSWTS+IVG AQHGQAE+ LALYD+MVS GVKPNEVTFVGLIYACSHVG V KGR+
Sbjct: 301 HRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRE 360
Query: 361 LFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
LF+SM +DYGI PSLQHYTCLLDLL RSG LDEAENLI MPF PDEPTWAALLSACK
Sbjct: 361 LFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQ 420
Query: 421 RNTEMGTRVANHLL-SLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYS 479
+MG R+A+HL+ S K +DPS+YILLSN+YASA++W VS+ R+ + MEV+K+PG+S
Sbjct: 421 GRGQMGIRIADHLVSSFKLKDPSTYILLSNIYASASLWGKVSEARRKLGEMEVRKDPGHS 480
Query: 480 YIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMK-RRGYVPDTSSVLHDMEQKEKERQ 538
+E K + +FYAGETSHPLK++IF LL +L+ EM+ R GYVPDTS +LHDM+++EKE+
Sbjct: 481 SVEVRKETEVFYAGETSHPLKEDIFRLLKKLEEEMRIRNGYVPDTSWILHDMDEQEKEKL 540
Query: 539 LFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHH 598
LFWHSER AVAYGLLK+VPGT +R+VKNLRVCGDCH+V+K IS IT+REI+VRDATRYHH
Sbjct: 541 LFWHSERSAVAYGLLKAVPGTPIRIVKNLRVCGDCHVVLKHISEITEREIIVRDATRYHH 600
Query: 599 FKDGKCSCNDFW 610
FK GKCSCNDFW
Sbjct: 601 FKGGKCSCNDFW 612
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 474 bits (1219), Expect = e-132, Method: Compositional matrix adjust.
Identities = 233/569 (40%), Positives = 342/569 (60%), Gaps = 10/569 (1%)
Query: 42 NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
N L+ + K + A + M RD VSW +I+T Y Q+ + +F
Sbjct: 223 NCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDE------- 275
Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
P VF G + R+ ++ F P ++V ++++ Y + A+
Sbjct: 276 SPVQDVFTWTAMVSGYI-QNRMVEEARELFDKMPE-RNEVSWNAMLAGYVQGERMEMAKE 333
Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
+FD + +N +W M++ YA+ G+ +A +F++ P R+ W A+++G QS + +A
Sbjct: 334 LFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEA 393
Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
F++M REG + + SS + CA+ LELGKQ+HG ++ GYE+ F+ NA++
Sbjct: 394 LRLFVQMEREGGRL-NRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLL 452
Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
MY KC I A D+F M KD+VSW ++I G ++HG E L ++ M G+KP++ T
Sbjct: 453 MYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDAT 512
Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
V ++ ACSH GLV KGR+ F +M +DYG+ P+ QHY C++DLL R+G L++A NL+K M
Sbjct: 513 MVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNM 572
Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461
PFEPD W LL A + H NTE+ A+ + +++PE+ Y+LLSN+YAS+ W V
Sbjct: 573 PFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVG 632
Query: 462 KVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVP 521
K+R M VKK PGYS+IE +H F G+ HP KDEIF L ELD MK+ GYV
Sbjct: 633 KLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVS 692
Query: 522 DTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMIS 581
TS VLHD+E++EKER + +HSERLAVAYG+++ G +RV+KNLRVC DCH +K ++
Sbjct: 693 KTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMA 752
Query: 582 RITKREIVVRDATRYHHFKDGKCSCNDFW 610
RIT R I++RD R+HHFKDG CSC D+W
Sbjct: 753 RITGRLIILRDNNRFHHFKDGSCSCGDYW 781
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 466 bits (1199), Expect = e-130, Method: Compositional matrix adjust.
Identities = 252/619 (40%), Positives = 345/619 (55%), Gaps = 65/619 (10%)
Query: 23 KTLHAQIIKLGLHQY----GPL---------------------------PNTLIDAYGKC 51
K +H Q+IKLG Y PL N+L+ C
Sbjct: 159 KQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLAC 218
Query: 52 DLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASL 111
+++ A L M ++D VSWA+++ Q L ++ I F M + L+ D + F S+
Sbjct: 219 GMIEDALQLFRGM-EKDSVSWAAMIKGLAQNGLAKEAIECFREM-KVQGLKMDQYPFGSV 276
Query: 112 VKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNS 171
+ ACG LGA GKQ+HAC + + F D V S+L+DMY KC + A+ VFD +K KN
Sbjct: 277 LPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNV 336
Query: 172 VSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRRE 231
VS WTA+V G Q+ +A F++M+R
Sbjct: 337 VS-------------------------------WTAMVVGYGQTGRAEEAVKIFLDMQRS 365
Query: 232 GVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIA 291
G+D D L + ACAN + LE G Q HG I G + +SN++V +Y KC DI
Sbjct: 366 GID-PDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDD 424
Query: 292 AKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSH 351
+ +F M +D VSWT+++ AQ G+A ET+ L+D+MV G+KP+ VT G+I ACS
Sbjct: 425 STRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSR 484
Query: 352 VGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWA 411
GLV KG++ FK M +YGI PS+ HY+C++DL SRSG L+EA I MPF PD W
Sbjct: 485 AGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWT 544
Query: 412 ALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVME 471
LLSAC++ N E+G A L+ L P P+ Y LLS++YAS W V+++R+ M
Sbjct: 545 TLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKN 604
Query: 472 VKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDME 531
VKKEPG S+I++ H F A + S P D+I+ L EL+ ++ GY PDTS V HD+E
Sbjct: 605 VKKEPGQSWIKWKGKLHSFSADDESSPYLDQIYAKLEELNNKIIDNGYKPDTSFVHHDVE 664
Query: 532 QKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVR 591
+ K + L +HSERLA+A+GL+ G +RV KNLRVC DCH K IS +T REI+VR
Sbjct: 665 EAVKVKMLNYHSERLAIAFGLIFVPSGQPIRVGKNLRVCVDCHNATKHISSVTGREILVR 724
Query: 592 DATRYHHFKDGKCSCNDFW 610
DA R+H FKDG CSC DFW
Sbjct: 725 DAVRFHRFKDGTCSCGDFW 743
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 462 bits (1188), Expect = e-129, Method: Compositional matrix adjust.
Identities = 243/624 (38%), Positives = 369/624 (59%), Gaps = 35/624 (5%)
Query: 21 TVKTLHAQIIKLGLHQYGPLPNTLIDAYGKC----------------DLVQY----AHHL 60
T K +H+ I+KLGL + N+L++ Y KC D+ + A H+
Sbjct: 164 TGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHM 223
Query: 61 -----------LEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFA 109
E+M +RD V+W S+++ +NQ + + IFS ML L PD F A
Sbjct: 224 QVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLA 283
Query: 110 SLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK 169
S++ AC +L +GKQ+H+ V + F +V ++L+ MY++CG AR + + K
Sbjct: 284 SVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTK 343
Query: 170 NSV--SWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIE 227
+ +TA+L Y + G A IF R++ WTA++ G Q + +A F
Sbjct: 344 DLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRS 403
Query: 228 MRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287
M G + L++++ ++ A L GKQIHG + G + +SNA++ MYAK
Sbjct: 404 MVGGG-QRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAG 462
Query: 288 DIIAAKDIFGRMR-RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLI 346
+I +A F +R +D VSWTS+I+ AQHG AEE L L++ M+ G++P+ +T+VG+
Sbjct: 463 NITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVF 522
Query: 347 YACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPD 406
AC+H GLV +GR+ F M + I P+L HY C++DL R+G L EA+ I+ MP EPD
Sbjct: 523 SACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPD 582
Query: 407 EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKL 466
TW +LLSAC+ H+N ++G A LL L+PE+ +Y L+N+Y++ W+ +K+RK
Sbjct: 583 VVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKS 642
Query: 467 MSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSV 526
M VKKE G+S+IE H+F + +HP K+EI+ + ++ E+K+ GYVPDT+SV
Sbjct: 643 MKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASV 702
Query: 527 LHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKR 586
LHD+E++ KE+ L HSE+LA+A+GL+ + T LR++KNLRVC DCH +K IS++ R
Sbjct: 703 LHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGR 762
Query: 587 EIVVRDATRYHHFKDGKCSCNDFW 610
EI+VRD TR+HHFKDG CSC D+W
Sbjct: 763 EIIVRDTTRFHHFKDGFCSCRDYW 786
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O23169|PP353_ARATH Pentatricopeptide repeat-containing protein At4g37170 OS=Arabidopsis thaliana GN=PCMP-H5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 455 bits (1171), Expect = e-127, Method: Compositional matrix adjust.
Identities = 219/569 (38%), Positives = 349/569 (61%), Gaps = 32/569 (5%)
Query: 42 NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
N +++ Y + L++ A L +EM ++D SW +++T Y + + P++ + ++S M +
Sbjct: 155 NVMVNGYAEVGLLEEARKLFDEMTEKDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNS 214
Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
+P+ F + V A ++ R GK++H V + D+V+ SSL+DMY KCG + AR
Sbjct: 215 RPNIFTVSIAVAAAAAVKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARN 274
Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
+FD I K+ VSWT+M+ Y +S R ++ +F + + G + NE
Sbjct: 275 IFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSE------------LVGSCERPNE--- 319
Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
Y+F + ++ ACA+ ELGKQ+HG + +G++ F S+++VD
Sbjct: 320 -YTF----------------AGVLNACADLTTEELGKQVHGYMTRVGFDPYSFASSSLVD 362
Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
MY KC +I +AK + + D+VSWTS+I G AQ+GQ +E L +D ++ +G KP+ VT
Sbjct: 363 MYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPDHVT 422
Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
FV ++ AC+H GLV KG + F S+ E + ++ + HYTCL+DLL+RSG ++ +++I M
Sbjct: 423 FVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRFEQLKSVISEM 482
Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461
P +P + WA++L C + N ++ A L ++PE+P +Y+ ++N+YA+A W+
Sbjct: 483 PMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIYAAAGKWEEEG 542
Query: 462 KVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVP 521
K+RK M + V K PG S+ E + H+F A +TSHP+ ++I E L EL +MK GYVP
Sbjct: 543 KMRKRMQEIGVTKRPGSSWTEIKRKRHVFIAADTSHPMYNQIVEFLRELRKKMKEEGYVP 602
Query: 522 DTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMIS 581
TS VLHD+E ++KE L +HSE+LAVA+ +L + GT ++V KNLR C DCH +K IS
Sbjct: 603 ATSLVLHDVEDEQKEENLVYHSEKLAVAFAILSTEEGTAIKVFKNLRSCVDCHGAIKFIS 662
Query: 582 RITKREIVVRDATRYHHFKDGKCSCNDFW 610
ITKR+I VRD+TR+H F++G+CSC D+W
Sbjct: 663 NITKRKITVRDSTRFHCFENGQCSCGDYW 691
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 454 bits (1169), Expect = e-127, Method: Compositional matrix adjust.
Identities = 225/601 (37%), Positives = 354/601 (58%), Gaps = 18/601 (2%)
Query: 16 HQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASI 75
H +A + TL ++ G +D Y C + YA ++ +EM RD V+W ++
Sbjct: 134 HGVAFKIATLCDPFVETGF----------MDMYASCGRINYARNVFDEMSHRDVVTWNTM 183
Query: 76 LTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSP 135
+ Y + L + +F M + PD + ++V ACG G R + ++ + +
Sbjct: 184 IERYCRFGLVDEAFKLFEEMKD-SNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIEND 242
Query: 136 FCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFE 195
D + ++LV MYA G + AR F + ++N TAM+S Y++ GR DA IF+
Sbjct: 243 VRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFD 302
Query: 196 QAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLE 255
Q ++L WT ++S V+S +A F EM G+ D + + S++ ACAN +L+
Sbjct: 303 QTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIK-PDVVSMFSVISACANLGILD 361
Query: 256 LGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTA 315
K +H + G ES L I+NA+++MYAKC + A +D+F +M R++VVSW+S+I +
Sbjct: 362 KAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALS 421
Query: 316 QHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSL 375
HG+A + L+L+ M V+PNEVTFVG++Y CSH GLV +G+K+F SM ++Y ITP L
Sbjct: 422 MHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKL 481
Query: 376 QHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLS 435
+HY C++DL R+ L EA +I++MP + W +L+SAC+ H E+G A +L
Sbjct: 482 EHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILE 541
Query: 436 LKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGET 495
L+P+ + +L+SN+YA W+ V +R++M V KE G S I+ SH F G+
Sbjct: 542 LEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDK 601
Query: 496 SHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKS 555
H +EI+ L E+ +++K GYVPD SVL D+E++EK+ + WHSE+LA+ +GL+
Sbjct: 602 RHKQSNEIYAKLDEVVSKLKLAGYVPDCGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNE 661
Query: 556 VPGT------VLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
V+R+VKNLRVC DCH+ K++S++ +REI+VRD TR+H +K+G CSC D+
Sbjct: 662 EKEEEKDSCGVIRIVKNLRVCEDCHLFFKLVSKVYEREIIVRDRTRFHCYKNGLCSCRDY 721
Query: 610 W 610
W
Sbjct: 722 W 722
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 449 bits (1155), Expect = e-125, Method: Compositional matrix adjust.
Identities = 234/588 (39%), Positives = 350/588 (59%), Gaps = 34/588 (5%)
Query: 23 KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
K +H IK+ + LIDAY + ++ A L E D V+W +++ Y Q+
Sbjct: 437 KQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFER-HNFDLVAWNAMMAGYTQS 495
Query: 83 NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
+ KT+ +F+ M + + D F A++ K CG L A GKQVHA + S + D V
Sbjct: 496 HDGHKTLKLFALMHKQGE-RSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWV 554
Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
S ++DMY KCG + A+ FDSI PV +
Sbjct: 555 SSGILDMYVKCGDMSAAQFAFDSI-------------------------------PVPDD 583
Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
WT ++SG +++ E AF+ F +MR GV + D ++++ A + LE G+QIH
Sbjct: 584 VAWTTMISGCIENGEEERAFHVFSQMRLMGV-LPDEFTIATLAKASSCLTALEQGRQIHA 642
Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
+ L + F+ ++VDMYAKC I A +F R+ ++ +W +++VG AQHG+ +E
Sbjct: 643 NALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKE 702
Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
TL L+ +M S G+KP++VTF+G++ ACSH GLV + K +SM DYGI P ++HY+CL
Sbjct: 703 TLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLA 762
Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
D L R+G + +AENLI++M E + LL+AC+ +TE G RVA LL L+P D S
Sbjct: 763 DALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSS 822
Query: 443 SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
+Y+LLSN+YA+A+ W + R +M +VKK+PG+S+IE HIF + S+ +
Sbjct: 823 AYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTEL 882
Query: 503 IFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLR 562
I+ + ++ ++K+ GYVP+T L D+E++EKER L++HSE+LAVA+GLL + P T +R
Sbjct: 883 IYRKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIR 942
Query: 563 VVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
V+KNLRVCGDCH MK I+++ REIV+RDA R+H FKDG CSC D+W
Sbjct: 943 VIKNLRVCGDCHNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGDYW 990
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 446 bits (1147), Expect = e-124, Method: Compositional matrix adjust.
Identities = 234/623 (37%), Positives = 352/623 (56%), Gaps = 40/623 (6%)
Query: 25 LHAQIIKLGLHQYGPLPNTLIDAYGKC----DLVQYAHHLLEEMPQRDHVSWASILT--- 77
HA +K G + N L+ Y KC L+ A + +E+ ++D SW +++T
Sbjct: 171 FHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYV 230
Query: 78 ----------------------AYN-------QANLPQKTISIFSTMLALDKLQPDHFVF 108
AYN Q+ + + M++ ++ D F +
Sbjct: 231 KNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVS-SGIELDEFTY 289
Query: 109 ASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKL 168
S+++AC + G +LGKQVHA +VL +SLV +Y KCG + ARA+F+ +
Sbjct: 290 PSVIRACATAGLLQLGKQVHA-YVLRREDFSFHFDNSLVSLYYKCGKFDEARAIFEKMPA 348
Query: 169 KNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEM 228
K+ VSW A+LS Y SG +A IF++ +N+ W ++SGL ++ + F M
Sbjct: 349 KDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCM 408
Query: 229 RREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSD 288
+REG + D S + +CA G+Q H ++ +G++S L NA++ MYAKC
Sbjct: 409 KREGFEPCD-YAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGV 467
Query: 289 IIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYA 348
+ A+ +F M D VSW ++I QHG E + +Y+EM+ G++P+ +T + ++ A
Sbjct: 468 VEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTA 527
Query: 349 CSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEP 408
CSH GLV +GRK F SM Y I P HY L+DLL RSG +AE++I+++PF+P
Sbjct: 528 CSHAGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAE 587
Query: 409 TWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMS 468
W ALLS C+ H N E+G A+ L L PE +Y+LLSN++A+ W+ V++VRKLM
Sbjct: 588 IWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMR 647
Query: 469 VMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLH 528
VKKE S+IE H F +TSHP + ++ L +L EM+R GYVPDTS VLH
Sbjct: 648 DRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSFVLH 707
Query: 529 DMEQK-EKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKRE 587
D+E KE L HSE++AVA+GL+K PGT +R+ KNLR CGDCH + +S + +R+
Sbjct: 708 DVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSWVVQRD 767
Query: 588 IVVRDATRYHHFKDGKCSCNDFW 610
I++RD R+HHF++G+CSC +FW
Sbjct: 768 IILRDRKRFHHFRNGECSCGNFW 790
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 445 bits (1145), Expect = e-124, Method: Compositional matrix adjust.
Identities = 217/589 (36%), Positives = 348/589 (59%), Gaps = 2/589 (0%)
Query: 23 KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
++LH +K + + N+LI Y C + A + + ++D VSW S++ + Q
Sbjct: 151 QSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQK 210
Query: 83 NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
P K + +F M + D ++ H ++ AC + G+QV + + + +
Sbjct: 211 GSPDKALELFKKMESED-VKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTL 269
Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
++++DMY KCG +A+ +FD+++ K++V+WT ML YA S + A E+ P +++
Sbjct: 270 ANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDI 329
Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
W AL+S Q+ +A F E++ + ++ + L S + ACA LELG+ IH
Sbjct: 330 VAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHS 389
Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
+ G +++A++ MY+KC D+ ++++F + ++DV W+++I G A HG E
Sbjct: 390 YIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNE 449
Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
+ ++ +M A VKPN VTF + ACSH GLV + LF M +YGI P +HY C++
Sbjct: 450 AVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIV 509
Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
D+L RSG+L++A I+AMP P W ALL ACK H N + LL L+P +
Sbjct: 510 DVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDG 569
Query: 443 SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
+++LLSN+YA W++VS++RK M V +KKEPG S IE H F +G+ +HP+ ++
Sbjct: 570 AHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEK 629
Query: 503 IFELLTELDAEMKRRGYVPDTSSVLHDMEQKE-KERQLFWHSERLAVAYGLLKSVPGTVL 561
++ L E+ ++K GY P+ S VL +E++E KE+ L HSE+LA+ YGL+ + V+
Sbjct: 630 VYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAPKVI 689
Query: 562 RVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
RV+KNLRVCGDCH V K+IS++ REI+VRD R+HHF++G+CSCNDFW
Sbjct: 690 RVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCNDFW 738
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 442 bits (1138), Expect = e-123, Method: Compositional matrix adjust.
Identities = 231/603 (38%), Positives = 344/603 (57%), Gaps = 37/603 (6%)
Query: 10 LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
L+ C R + +H+QIIK + + LID Y K + A +L +D
Sbjct: 497 LKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDV 556
Query: 70 VSWASILTAYNQANLPQKTISIFSTMLALDK-LQPDHFVFASLVKACGSLGATRLGKQVH 128
VSW +++ Y Q N K ++ F ML D+ ++ D + V AC L A + G+Q+H
Sbjct: 557 VSWTTMIAGYTQYNFDDKALTTFRQML--DRGIRSDEVGLTNAVSACAGLQALKEGQQIH 614
Query: 129 ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
A +S F D +++LV +Y++C G+ +
Sbjct: 615 AQACVSGFSSDLPFQNALVTLYSRC-------------------------------GKIE 643
Query: 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
++ FEQ + W ALVSG QS N +A F+ M REG+D + S V A
Sbjct: 644 ESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGID-NNNFTFGSAVKAA 702
Query: 249 ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWT 308
+ A ++ GKQ+H ++ GY+S + NA++ MYAKC I A+ F + K+ VSW
Sbjct: 703 SETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWN 762
Query: 309 SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
+II ++HG E L +D+M+ + V+PN VT VG++ ACSH+GLV KG F+SM +
Sbjct: 763 AIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSE 822
Query: 369 YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTR 428
YG++P +HY C++D+L+R+G L A+ I+ MP +PD W LLSAC H+N E+G
Sbjct: 823 YGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEF 882
Query: 429 VANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSH 488
A+HLL L+PED ++Y+LLSN+YA + W R+ M VKKEPG S+IE H
Sbjct: 883 AAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIH 942
Query: 489 IFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAV 548
FY G+ +HPL DEI E +L GYV D S+L++++ ++K+ +F HSE+LA+
Sbjct: 943 SFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAI 1002
Query: 549 AYGLLKSVPGTV-LRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCN 607
++GLL S+P TV + V+KNLRVC DCH +K +S+++ REI+VRDA R+HHF+ G CSC
Sbjct: 1003 SFGLL-SLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCK 1061
Query: 608 DFW 610
D+W
Sbjct: 1062 DYW 1064
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 610 | ||||||
| 224055823 | 609 | predicted protein [Populus trichocarpa] | 0.996 | 0.998 | 0.741 | 0.0 | |
| 449484291 | 611 | PREDICTED: LOW QUALITY PROTEIN: pentatri | 1.0 | 0.998 | 0.725 | 0.0 | |
| 449469094 | 611 | PREDICTED: pentatricopeptide repeat-cont | 1.0 | 0.998 | 0.725 | 0.0 | |
| 225460265 | 610 | PREDICTED: pentatricopeptide repeat-cont | 1.0 | 1.0 | 0.729 | 0.0 | |
| 356538057 | 611 | PREDICTED: pentatricopeptide repeat-cont | 0.998 | 0.996 | 0.710 | 0.0 | |
| 357462829 | 616 | Pentatricopeptide repeat-containing prot | 0.962 | 0.952 | 0.725 | 0.0 | |
| 22328607 | 612 | pentatricopeptide repeat-containing prot | 1.0 | 0.996 | 0.671 | 0.0 | |
| 5280987 | 686 | hypothetical protein [Arabidopsis thalia | 0.942 | 0.838 | 0.658 | 0.0 | |
| 297800868 | 1057 | hypothetical protein ARALYDRAFT_330113 [ | 0.895 | 0.516 | 0.695 | 0.0 | |
| 7488184 | 1070 | probable selenium-binding protein - Arab | 0.872 | 0.497 | 0.671 | 0.0 |
| >gi|224055823|ref|XP_002298671.1| predicted protein [Populus trichocarpa] gi|222845929|gb|EEE83476.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 964 bits (2491), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/608 (74%), Positives = 523/608 (86%)
Query: 3 ISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLE 62
I YLHRL++C +HQ L K +HAQI+K GL+Q PLPNTL+DAYGKC+L+Q AH+L +
Sbjct: 2 IPSYLHRLKLCTKHQAPLNAKKIHAQIVKSGLNQCQPLPNTLLDAYGKCNLLQDAHYLFD 61
Query: 63 EMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATR 122
EMPQRDHVSWASILTAYNQA LP KT+SIF M D+LQPDHFV+A+L+KAC SL + R
Sbjct: 62 EMPQRDHVSWASILTAYNQAKLPNKTLSIFHYMFTTDRLQPDHFVYATLLKACASLCSLR 121
Query: 123 LGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYA 182
LGKQVHA FVLSPF DDDVVKSSLVDMYAKCGLP+ AR+VFDSI +K SVSWTAMLS YA
Sbjct: 122 LGKQVHARFVLSPFVDDDVVKSSLVDMYAKCGLPSIARSVFDSILVKTSVSWTAMLSGYA 181
Query: 183 RSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLS 242
RSG K +AME+F + PVRNL+ WTAL+SGLVQS ID Y FIEMRREGVDIVDPLVLS
Sbjct: 182 RSGLKDEAMELFLRTPVRNLYSWTALISGLVQSGYCIDGCYMFIEMRREGVDIVDPLVLS 241
Query: 243 SIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK 302
S+VGACAN AVL LGKQIHGLVI GYESCLFISNA+VDMYAKCSDI+AA+++F RM +
Sbjct: 242 SVVGACANLAVLGLGKQIHGLVIGSGYESCLFISNALVDMYAKCSDILAARNVFNRMLHR 301
Query: 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF 362
DVVSWTSIIVG AQHG+A+E L LYD+MV A +KPNEVTFVGLIYACSH GLV KGRKLF
Sbjct: 302 DVVSWTSIIVGAAQHGRAKEALDLYDQMVLAEIKPNEVTFVGLIYACSHAGLVSKGRKLF 361
Query: 363 KSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRN 422
K+MIEDY I+PSLQ +TC LDLLSRSGHL+EAE+LIK MP +PDEPTWAALLSACKHH N
Sbjct: 362 KAMIEDYRISPSLQLFTCFLDLLSRSGHLNEAEDLIKTMPHKPDEPTWAALLSACKHHGN 421
Query: 423 TEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIE 482
TEMG R+A+ LLSL +PS+Y+LLSNVYA A W+ +S+VRKLM+ MEVK++PGYS I+
Sbjct: 422 TEMGVRIADRLLSLNMHEPSTYVLLSNVYAGAGKWEQMSRVRKLMTDMEVKRKPGYSSID 481
Query: 483 FGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWH 542
GK S +F+AGET HP+KDEIF LL ELDAEM++RGY+PDTS VLHDME++EKER+LFWH
Sbjct: 482 LGKESQVFHAGETCHPMKDEIFGLLKELDAEMRKRGYIPDTSYVLHDMEEQEKERELFWH 541
Query: 543 SERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDG 602
SER AVAYGLLK+VPGTV+R+VKNLR+CGDCH +K+ S I +EI+VRDATRYHHFKDG
Sbjct: 542 SERWAVAYGLLKAVPGTVIRIVKNLRICGDCHTFLKLTSSIVHKEIIVRDATRYHHFKDG 601
Query: 603 KCSCNDFW 610
+CSCNDFW
Sbjct: 602 RCSCNDFW 609
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449484291|ref|XP_004156841.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At4g14050, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 946 bits (2445), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/611 (72%), Positives = 520/611 (85%), Gaps = 1/611 (0%)
Query: 1 MQISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHL 60
M ISH+LH+L++CAR Q A LH+QIIK G + L NTL+D YGKC L+ A L
Sbjct: 1 MNISHFLHQLQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQL 60
Query: 61 LEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGA 120
+EMP RDHVSWASILTA+N+A +P++T+S+ +TM D LQPDHFVFA +V+AC SLG
Sbjct: 61 FDEMPNRDHVSWASILTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGY 120
Query: 121 TRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSA 180
RLGKQVHA F+LS FCDD+VVKSSL+DMY KCG P+ ARAVFDSI KNSVSWT+M+S
Sbjct: 121 LRLGKQVHARFMLSXFCDDEVVKSSLIDMYTKCGQPDEARAVFDSILFKNSVSWTSMISG 180
Query: 181 YARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLV 240
YARSGRK +AM++F QAPVRNLF WTAL+SGL+QS + I +F F EMRREG+DIVDPLV
Sbjct: 181 YARSGRKCEAMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLV 240
Query: 241 LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR 300
LSS+VG CAN A+LELGKQIHGLVIALG+ESCLFISNA+VDMYAKCSDI+AAKDIF RM
Sbjct: 241 LSSVVGGCANLALLELGKQIHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMP 300
Query: 301 RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK 360
RKDV+SWTSIIVGTAQHG+AEE L LYDEMV + +KPNEVTFVGL+YACSH GLV +GR+
Sbjct: 301 RKDVISWTSIIVGTAQHGKAEEALTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRE 360
Query: 361 LFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
LF+SM DY I PSLQHYTCLLDLLSRSGHLDEAENL+ +PF+PDEPTWA+LLSAC H
Sbjct: 361 LFRSMTTDYSINPSLQHYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACMRH 420
Query: 421 RNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSY 480
N EMG R+A+ +L LKPEDPS+YILLSNVYA A MW VSKVRKLMS MEV+KEPGYS
Sbjct: 421 NNLEMGVRIADRVLDLKPEDPSTYILLSNVYAGAEMWGSVSKVRKLMSSMEVRKEPGYSS 480
Query: 481 IEFGKGSHIFYAGET-SHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQL 539
I+FGK S +F+AGE+ HP+K+EI LL +LDAEM++RGYVP+TS VL+D+EQ+EKE+QL
Sbjct: 481 IDFGKDSQVFHAGESCDHPMKNEICNLLKDLDAEMRKRGYVPNTSFVLYDIEQQEKEKQL 540
Query: 540 FWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHF 599
FWHSERLAVAYGLLK+VPGT++R+VKNLR+CGDCH V+K IS I KREI+VRDATRYHHF
Sbjct: 541 FWHSERLAVAYGLLKAVPGTIIRIVKNLRICGDCHNVLKFISDIVKREIMVRDATRYHHF 600
Query: 600 KDGKCSCNDFW 610
K+GKCSCNDFW
Sbjct: 601 KEGKCSCNDFW 611
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449469094|ref|XP_004152256.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 946 bits (2444), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/611 (72%), Positives = 521/611 (85%), Gaps = 1/611 (0%)
Query: 1 MQISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHL 60
M ISH+LH+L++CAR Q A LH+QIIK G + L NTL+D YGKC L+ A L
Sbjct: 1 MNISHFLHQLQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQL 60
Query: 61 LEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGA 120
+EMP RDHVSWASILTA+N+A +P++T+S+ +TM D LQPDHFVFA +V+AC SLG
Sbjct: 61 FDEMPNRDHVSWASILTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGY 120
Query: 121 TRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSA 180
RLGKQVHA F+LS FCDD+VVKSSL+DMY KCG P++ARAVFDSI KNSVSWT+M+S
Sbjct: 121 LRLGKQVHARFMLSFFCDDEVVKSSLIDMYTKCGQPDDARAVFDSILFKNSVSWTSMISG 180
Query: 181 YARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLV 240
YARSGRK +AM++F QAPVRNLF WTAL+SGL+QS + I +F F EMRREG+DIVDPLV
Sbjct: 181 YARSGRKCEAMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLV 240
Query: 241 LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR 300
LSS+VG CAN A+LELGKQIHGLVIALG+ESCLFISNA+VDMYAKCSDI+AAKDIF RM
Sbjct: 241 LSSVVGGCANLALLELGKQIHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMP 300
Query: 301 RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK 360
RKDV+SWTSIIVGTAQHG+AEE L LYDEMV + +KPNEVTFVGL+YACSH GLV +GR+
Sbjct: 301 RKDVISWTSIIVGTAQHGKAEEALTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRE 360
Query: 361 LFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
LF+SM DY I PSLQHYTCLLDLLSRSGHLDEAENL+ +PF+PDEPTWA+LLSAC H
Sbjct: 361 LFRSMTTDYSINPSLQHYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACMRH 420
Query: 421 RNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSY 480
N EMG R+A+ +L LKPEDPS+YILLSNVYA A MW VSKVRKLMS MEV+KEPGYS
Sbjct: 421 NNLEMGVRIADRVLDLKPEDPSTYILLSNVYAGAEMWGSVSKVRKLMSSMEVRKEPGYSS 480
Query: 481 IEFGKGSHIFYAGET-SHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQL 539
I+FGK S +F+AGE+ HP+K+EI LL +LDAEM++RGYVP+TS VL+D+EQ+EKE+QL
Sbjct: 481 IDFGKDSQVFHAGESCDHPMKNEICNLLKDLDAEMRKRGYVPNTSFVLYDIEQQEKEKQL 540
Query: 540 FWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHF 599
FWHSERLAVAYGLLK+VPGT++R+VKNLR+CGDCH V+K IS I KREI+VRDATRYHHF
Sbjct: 541 FWHSERLAVAYGLLKAVPGTIIRIVKNLRICGDCHNVLKFISDIVKREIMVRDATRYHHF 600
Query: 600 KDGKCSCNDFW 610
K+GKCSCNDFW
Sbjct: 601 KEGKCSCNDFW 611
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225460265|ref|XP_002278647.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 943 bits (2438), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 445/610 (72%), Positives = 511/610 (83%)
Query: 1 MQISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHL 60
M SH +++L+ CARHQ K LH IIK G+ Q L N LI+ YGKC L+Q A +L
Sbjct: 1 MCYSHLVYQLQACARHQSPPIGKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNL 60
Query: 61 LEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGA 120
++P RD +SWASILTA NQANLP T+S+F M D LQPDH+VFA LVKAC LGA
Sbjct: 61 FNQLPHRDPISWASILTANNQANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGA 120
Query: 121 TRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSA 180
+ GKQVHA F++SP DDDVVKSSLVDMYAKCGLP+ R VFDSI KNS+SWTAM+S
Sbjct: 121 MKQGKQVHATFIVSPVSDDDVVKSSLVDMYAKCGLPDIGRVVFDSISSKNSISWTAMISG 180
Query: 181 YARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLV 240
YA+SGRK DA+++F++ PV+NL WTAL+SGLVQS N +D+FY F+EMR +G+DIVDP +
Sbjct: 181 YAQSGRKLDAIQLFQKMPVKNLLSWTALISGLVQSGNWVDSFYLFMEMRSKGIDIVDPFI 240
Query: 241 LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR 300
LSSI+GA AN AVL LGKQIH LVI LGYES LF+SNA+VDMYAKCSD++AAK IFGRM
Sbjct: 241 LSSIIGASANLAVLGLGKQIHCLVILLGYESSLFVSNALVDMYAKCSDVLAAKKIFGRMV 300
Query: 301 RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK 360
++D+VSWTSIIVGTAQHG AEE L+LY+ M+S G+KPNEVTFVGLIYACSHVGLV KGR
Sbjct: 301 QRDIVSWTSIIVGTAQHGLAEEALSLYNRMLSTGLKPNEVTFVGLIYACSHVGLVSKGRY 360
Query: 361 LFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
F SMI+DYGI PSLQHYTCLLDLLSRSGHL+EAENLIKAMPF+PDE TWAALLSAC HH
Sbjct: 361 FFNSMIKDYGINPSLQHYTCLLDLLSRSGHLEEAENLIKAMPFKPDEATWAALLSACNHH 420
Query: 421 RNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSY 480
RNT +G RVA+HLLSLKPEDPS+YILLSN+YASAAMW+ VSKVR+LM+ MEVKKEPGYS
Sbjct: 421 RNTLIGIRVADHLLSLKPEDPSTYILLSNIYASAAMWESVSKVRRLMAAMEVKKEPGYSC 480
Query: 481 IEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLF 540
I GK S +F AGETSHP K+EIF LL ELDAEMK+RGY+PDTSSVLHD+EQ+EKERQLF
Sbjct: 481 IVLGKESQVFLAGETSHPAKEEIFGLLEELDAEMKKRGYIPDTSSVLHDLEQQEKERQLF 540
Query: 541 WHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFK 600
WHSERLAVAYGLLK +PG VL +VKNLRVCGDCH V+K IS I KREIVVRDA RYHHFK
Sbjct: 541 WHSERLAVAYGLLKGIPGMVLHIVKNLRVCGDCHTVLKFISIIVKREIVVRDANRYHHFK 600
Query: 601 DGKCSCNDFW 610
DGKCSCN+FW
Sbjct: 601 DGKCSCNNFW 610
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356538057|ref|XP_003537521.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 924 bits (2388), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/612 (71%), Positives = 505/612 (82%), Gaps = 3/612 (0%)
Query: 1 MQISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHL 60
M ++ L A Q L K LHAQIIK GL+Q+ P+PNTL++AYGKC L+Q A L
Sbjct: 1 MSLAQSLQSQLCSAARQSPLLAKKLHAQIIKAGLNQHEPIPNTLLNAYGKCGLIQDALQL 60
Query: 61 LEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGA 120
+ +P+RD V+WAS+LTA N +N P + +SI ++L+ PDHFVFASLVKAC +LG
Sbjct: 61 FDALPRRDPVAWASLLTACNLSNRPHRALSISRSLLS-TGFHPDHFVFASLVKACANLGV 119
Query: 121 --TRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAML 178
+ GKQVHA F LSPF DDDVVKSSL+DMYAK GLP+ RAVFDSI NS+SWT M+
Sbjct: 120 LHVKQGKQVHARFFLSPFSDDDVVKSSLIDMYAKFGLPDYGRAVFDSISSLNSISWTTMI 179
Query: 179 SAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDP 238
S YARSGRK +A +F Q P RNLF WTAL+SGLVQS N +DAF+ F+EMR EG+ + DP
Sbjct: 180 SGYARSGRKFEAFRLFRQTPYRNLFAWTALISGLVQSGNGVDAFHLFVEMRHEGISVTDP 239
Query: 239 LVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGR 298
LVLSS+VGACAN A+ ELGKQ+HG+VI LGYESCLFISNA++DMYAKCSD++AAK IF
Sbjct: 240 LVLSSVVGACANLALWELGKQMHGVVITLGYESCLFISNALIDMYAKCSDLVAAKYIFCE 299
Query: 299 MRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKG 358
M RKDVVSWTSIIVGTAQHGQAEE LALYDEMV AGVKPNEVTFVGLI+ACSH GLV KG
Sbjct: 300 MCRKDVVSWTSIIVGTAQHGQAEEALALYDEMVLAGVKPNEVTFVGLIHACSHAGLVSKG 359
Query: 359 RKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACK 418
R LF++M+ED+GI+PSLQHYTCLLDL SRSGHLDEAENLI+ MP PDEPTWAALLS+CK
Sbjct: 360 RTLFRTMVEDHGISPSLQHYTCLLDLFSRSGHLDEAENLIRTMPVNPDEPTWAALLSSCK 419
Query: 419 HHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGY 478
H NT+M R+A+HLL+LKPEDPSSYILLSN+YA A MW+ VSKVRKLM +E KK PGY
Sbjct: 420 RHGNTQMAVRIADHLLNLKPEDPSSYILLSNIYAGAGMWEDVSKVRKLMMTLEAKKAPGY 479
Query: 479 SYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQ 538
S I+ GKGSH+FYAGETSHP++DEI L+ ELD EM++RGY PDTSSVLHDM+Q+EKERQ
Sbjct: 480 SCIDLGKGSHVFYAGETSHPMRDEIIGLMRELDEEMRKRGYAPDTSSVLHDMDQQEKERQ 539
Query: 539 LFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHH 598
LFWHSERLAVAYGLLK+VPGTV+R+VKNLRVCGDCH V+K+IS IT REI VRDA RYHH
Sbjct: 540 LFWHSERLAVAYGLLKAVPGTVIRIVKNLRVCGDCHTVLKLISAITNREIYVRDAKRYHH 599
Query: 599 FKDGKCSCNDFW 610
FKDG CSCNDFW
Sbjct: 600 FKDGNCSCNDFW 611
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357462829|ref|XP_003601696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355490744|gb|AES71947.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 903 bits (2333), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/590 (72%), Positives = 499/590 (84%), Gaps = 3/590 (0%)
Query: 23 KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
K LHAQIIK GL+ + P P TLIDAYGKC L++ A L + +PQ+DHV+WA++L+A N +
Sbjct: 28 KKLHAQIIKSGLNHHHPFPKTLIDAYGKCGLLKDALKLFDALPQQDHVAWATVLSACNLS 87
Query: 83 NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGAT--RLGKQVHACFVLSPFCDDD 140
NLP K SI +L + LQPDHFVF+SL+KAC +LG+ +LGKQ+HA F+LSPF +DD
Sbjct: 88 NLPHKAFSISLPILH-EGLQPDHFVFSSLIKACANLGSVHVKLGKQLHARFLLSPFFEDD 146
Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
VVKSSLVDMYAK LP+ RAVFDSI +S+SWTAM+S YARSGRK +A+E+F ++P +
Sbjct: 147 VVKSSLVDMYAKFELPDYGRAVFDSIFELSSISWTAMISGYARSGRKLEALELFRESPFK 206
Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI 260
NL+ WTAL+SGLVQS N DA Y F+EMRREGV I DPLVLSS+VGACAN AV ELGKQ+
Sbjct: 207 NLYAWTALISGLVQSGNANDALYLFVEMRREGVSIADPLVLSSVVGACANSAVRELGKQV 266
Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
H +VI LGYESCLFISNA+VDMYAKCSD++AAK IF MRRKDVVSWTSIIVGTAQHG A
Sbjct: 267 HCVVITLGYESCLFISNALVDMYAKCSDVVAAKYIFCEMRRKDVVSWTSIIVGTAQHGLA 326
Query: 321 EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380
EE L LYD+MV AGVKPNEVTFVGLIYACSHVGLV KGR LFKSM+ED+GI PSLQHYTC
Sbjct: 327 EEALTLYDDMVLAGVKPNEVTFVGLIYACSHVGLVSKGRALFKSMVEDFGIRPSLQHYTC 386
Query: 381 LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440
LLDL SRSGHLDEAENLI+ MP +PDEPTWAALLSACKHH NT+M R+A+HLL LKPED
Sbjct: 387 LLDLFSRSGHLDEAENLIRTMPVKPDEPTWAALLSACKHHGNTKMAVRIADHLLDLKPED 446
Query: 441 PSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLK 500
PSSYILLSN+YA A MW++VS VRKLM+V EVKK PGYS ++ G+ +F+AGE S P+K
Sbjct: 447 PSSYILLSNIYAGAGMWENVSMVRKLMAVKEVKKVPGYSCVDLGREFQVFHAGEASQPMK 506
Query: 501 DEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTV 560
DEI L+T+LD+EM+RRGYVPDTSSVL DM+Q+EKERQLFWHSERLA+AYGLLK+VPGT
Sbjct: 507 DEILGLMTKLDSEMRRRGYVPDTSSVLLDMDQQEKERQLFWHSERLALAYGLLKAVPGTT 566
Query: 561 LRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
+R+VKNLRVCGDCH V+K+IS IT REI VRD RYHHFKDGKCSCNDFW
Sbjct: 567 IRIVKNLRVCGDCHTVLKLISAITSREIYVRDVKRYHHFKDGKCSCNDFW 616
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|22328607|ref|NP_193141.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|223635650|sp|O23266.3|PP308_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14050, mitochondrial; Flags: Precursor gi|332657965|gb|AEE83365.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 872 bits (2252), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/612 (67%), Positives = 510/612 (83%), Gaps = 2/612 (0%)
Query: 1 MQISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHL 60
M I HYLH+L++CAR++ T K LHA I+KLG+ Q PL NTL++ YGKC +A +
Sbjct: 1 MLIPHYLHQLQLCARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQV 60
Query: 61 LEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGA 120
+EMP RDH++WAS+LTA NQANL KT+S+FS++ + L+PD FVF++LVKAC +LG+
Sbjct: 61 FDEMPHRDHIAWASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGS 120
Query: 121 TRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSA 180
G+QVH F++S + +D+VVKSSLVDMYAKCGL N+A+AVFDSI++KN++SWTAM+S
Sbjct: 121 IDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSG 180
Query: 181 YARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLV 240
YA+SGRK++A+E+F PV+NL+ WTAL+SG VQS ++AF F EMRRE VDI+DPLV
Sbjct: 181 YAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLV 240
Query: 241 LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR 300
LSSIVGACAN A G+Q+HGLVIALG++SC+FISNA++DMYAKCSD+IAAKDIF RMR
Sbjct: 241 LSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMR 300
Query: 301 RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK 360
+DVVSWTS+IVG AQHGQAE+ LALYD+MVS GVKPNEVTFVGLIYACSHVG V KGR+
Sbjct: 301 HRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRE 360
Query: 361 LFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
LF+SM +DYGI PSLQHYTCLLDLL RSG LDEAENLI MPF PDEPTWAALLSACK
Sbjct: 361 LFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQ 420
Query: 421 RNTEMGTRVANHLL-SLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYS 479
+MG R+A+HL+ S K +DPS+YILLSN+YASA++W VS+ R+ + MEV+K+PG+S
Sbjct: 421 GRGQMGIRIADHLVSSFKLKDPSTYILLSNIYASASLWGKVSEARRKLGEMEVRKDPGHS 480
Query: 480 YIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMK-RRGYVPDTSSVLHDMEQKEKERQ 538
+E K + +FYAGETSHPLK++IF LL +L+ EM+ R GYVPDTS +LHDM+++EKE+
Sbjct: 481 SVEVRKETEVFYAGETSHPLKEDIFRLLKKLEEEMRIRNGYVPDTSWILHDMDEQEKEKL 540
Query: 539 LFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHH 598
LFWHSER AVAYGLLK+VPGT +R+VKNLRVCGDCH+V+K IS IT+REI+VRDATRYHH
Sbjct: 541 LFWHSERSAVAYGLLKAVPGTPIRIVKNLRVCGDCHVVLKHISEITEREIIVRDATRYHH 600
Query: 599 FKDGKCSCNDFW 610
FK GKCSCNDFW
Sbjct: 601 FKGGKCSCNDFW 612
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|5280987|emb|CAB46001.1| hypothetical protein [Arabidopsis thaliana] gi|7268109|emb|CAB78447.1| hypothetical protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 815 bits (2104), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/591 (65%), Positives = 480/591 (81%), Gaps = 16/591 (2%)
Query: 21 TVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYN 80
T K LHA I+KLG+ Q PL NTL++ YGKC +A + +EMP RDH++WAS+LTA N
Sbjct: 89 TAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLTALN 148
Query: 81 QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD 140
QANL KT+S+FS++ + L+PD FVF++LVKAC +LG+ G+QVH F++S + +D+
Sbjct: 149 QANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDE 208
Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
VVKSSLVDMYAKCGL N+A+AVFDSI++KN++SWTAM+S YA+SGRK++A+E+F PV+
Sbjct: 209 VVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVK 268
Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI 260
NL+ WTAL+SG VQS ++AF F EMRRE VDI+DPLVLSSIVGACAN A G+Q+
Sbjct: 269 NLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQV 328
Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
HG NA++DMYAKCSD+IAAKDIF RMR +DVVSWTS+IVG AQHGQA
Sbjct: 329 HG--------------NALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQA 374
Query: 321 EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380
E+ LALYD+MVS GVKPNEVTFVGLIYACSHVG V KGR+LF+SM +DYGI PSLQHYTC
Sbjct: 375 EKALALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTC 434
Query: 381 LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLL-SLKPE 439
LLDLL RSG LDEAENLI MPF PDEPTWAALLSACK +MG R+A+HL+ S K +
Sbjct: 435 LLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFKLK 494
Query: 440 DPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPL 499
DPS+YILLSN+YASA++W VS+ R+ + MEV+K+PG+S +E K + +FYAGETSHPL
Sbjct: 495 DPSTYILLSNIYASASLWGKVSEARRKLGEMEVRKDPGHSSVEVRKETEVFYAGETSHPL 554
Query: 500 KDEIFELLTELDAEMK-RRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPG 558
K++IF LL +L+ EM+ R GYVPDTS +LHDM+++EKE+ LFWHSER AVAYGLLK+VPG
Sbjct: 555 KEDIFRLLKKLEEEMRIRNGYVPDTSWILHDMDEQEKEKLLFWHSERSAVAYGLLKAVPG 614
Query: 559 TVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
T +R+VKNLRVCGDCH+V+K IS IT+REI+VRDATRYHHFK GKCSCNDF
Sbjct: 615 TPIRIVKNLRVCGDCHVVLKHISEITEREIIVRDATRYHHFKGGKCSCNDF 665
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297800868|ref|XP_002868318.1| hypothetical protein ARALYDRAFT_330113 [Arabidopsis lyrata subsp. lyrata] gi|297314154|gb|EFH44577.1| hypothetical protein ARALYDRAFT_330113 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 806 bits (2081), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/548 (69%), Positives = 466/548 (85%), Gaps = 2/548 (0%)
Query: 64 MPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRL 123
MP RDH++WAS+LTA NQANL KT+ +FS++ + L+PD FVF++LVKAC +LG+ +L
Sbjct: 1 MPHRDHIAWASVLTALNQANLSGKTLWVFSSVGSSSGLRPDDFVFSALVKACANLGSIKL 60
Query: 124 GKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYAR 183
GKQVH F++S + +DDVVKSSLVDMYAKC L + A+AVFDSI++KN++SWTAM+S YA+
Sbjct: 61 GKQVHCHFIVSEYSNDDVVKSSLVDMYAKCRLLDCAKAVFDSIRVKNTISWTAMVSGYAK 120
Query: 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSS 243
SGRK++A+E+F + PV+NL+ WTAL+SG VQS ++AF F EMRRE VDI+DPLVLSS
Sbjct: 121 SGRKEEALELFRRLPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSS 180
Query: 244 IVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKD 303
IVGACAN A G+Q+HGLVIALG++SC+FISNA++DMYAKCSD+IAAKDIF RMR +D
Sbjct: 181 IVGACANLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRD 240
Query: 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFK 363
VVSWTS+IVG AQHGQAE+ LALYDEMVS GVKPNEVTFVGLIYACSHVG V KGR+LF+
Sbjct: 241 VVSWTSLIVGMAQHGQAEKALALYDEMVSHGVKPNEVTFVGLIYACSHVGFVAKGRELFQ 300
Query: 364 SMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNT 423
SM +DYGI PSLQHYTCLLDLL RSG LDEAENLI MPF PDEPTWAALLSACK
Sbjct: 301 SMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGQG 360
Query: 424 EMGTRVANHLL-SLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIE 482
+MG R+A+HL+ S KP+DPS+YILLSN+YASA++W VS+ R+ + MEV+K+PGYS +E
Sbjct: 361 QMGVRIADHLVSSFKPKDPSTYILLSNIYASASLWGKVSEARRKLGDMEVRKDPGYSSVE 420
Query: 483 FGKGSHIFYAGETSHPLKDEIFELLTELDAEMK-RRGYVPDTSSVLHDMEQKEKERQLFW 541
K + +FYAGETSH LK++IF LL +L+ EM+ R GYVPDTS +LHDM+++EKE+ LFW
Sbjct: 421 VRKETEVFYAGETSHALKEDIFRLLKKLEEEMRIRNGYVPDTSWILHDMDEQEKEKLLFW 480
Query: 542 HSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKD 601
HSER AVAYGLLK+VPGT +R+VKNLRVCGDCH+V+K IS IT+REI+VRDATRYHHFK
Sbjct: 481 HSERSAVAYGLLKAVPGTPIRIVKNLRVCGDCHVVLKHISEITEREIIVRDATRYHHFKG 540
Query: 602 GKCSCNDF 609
GKCSCNDF
Sbjct: 541 GKCSCNDF 548
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|7488184|pir||E71401 probable selenium-binding protein - Arabidopsis thaliana | Back alignment and taxonomy information |
|---|
Score = 767 bits (1980), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/548 (67%), Positives = 452/548 (82%), Gaps = 16/548 (2%)
Query: 64 MPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRL 123
MP RDH++WAS+LTA NQANL KT+S+FS++ + L+PD FVF++LVKAC +LG+
Sbjct: 1 MPHRDHIAWASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDH 60
Query: 124 GKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYAR 183
G+QVH F++S + +D+VVKSSLVDMYAKCGL N+A+AVFDSI++KN++SWTAM+S YA+
Sbjct: 61 GRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAK 120
Query: 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSS 243
SGRK++A+E+F PV+NL+ WTAL+SG VQS ++AF F EMRRE VDI+DPLVLSS
Sbjct: 121 SGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSS 180
Query: 244 IVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKD 303
IVGACAN A G+Q+HG NA++DMYAKCSD+IAAKDIF RMR +D
Sbjct: 181 IVGACANLAASIAGRQVHG--------------NALIDMYAKCSDVIAAKDIFSRMRHRD 226
Query: 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFK 363
VVSWTS+IVG AQHGQAE+ LALYD+MVS GVKPNEVTFVGLIYACSHVG V KGR+LF+
Sbjct: 227 VVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQ 286
Query: 364 SMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNT 423
SM +DYGI PSLQHYTCLLDLL RSG LDEAENLI MPF PDEPTWAALLSACK
Sbjct: 287 SMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGRG 346
Query: 424 EMGTRVANHLL-SLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIE 482
+MG R+A+HL+ S K +DPS+YILLSN+YASA++W VS+ R+ + MEV+K+PG+S +E
Sbjct: 347 QMGIRIADHLVSSFKLKDPSTYILLSNIYASASLWGKVSEARRKLGEMEVRKDPGHSSVE 406
Query: 483 FGKGSHIFYAGETSHPLKDEIFELLTELDAEMK-RRGYVPDTSSVLHDMEQKEKERQLFW 541
K + +FYAGETSHPLK++IF LL +L+ EM+ R GYVPDTS +LHDM+++EKE+ LFW
Sbjct: 407 VRKETEVFYAGETSHPLKEDIFRLLKKLEEEMRIRNGYVPDTSWILHDMDEQEKEKLLFW 466
Query: 542 HSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKD 601
HSER AVAYGLLK+VPGT +R+VKNLRVCGDCH+V+K IS IT+REI+VRDATRYHHFK
Sbjct: 467 HSERSAVAYGLLKAVPGTPIRIVKNLRVCGDCHVVLKHISEITEREIIVRDATRYHHFKG 526
Query: 602 GKCSCNDF 609
GKCSCNDF
Sbjct: 527 GKCSCNDF 534
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 610 | ||||||
| TAIR|locus:2129361 | 612 | AT4G14050 [Arabidopsis thalian | 1.0 | 0.996 | 0.671 | 1.2e-230 | |
| TAIR|locus:2056794 | 630 | REME1 "required for efficiency | 0.708 | 0.685 | 0.416 | 4.5e-124 | |
| TAIR|locus:2119440 | 1064 | AT4G13650 [Arabidopsis thalian | 0.709 | 0.406 | 0.435 | 4e-123 | |
| TAIR|locus:2082886 | 850 | EMB2261 "embryo defective 2261 | 0.721 | 0.517 | 0.435 | 1.5e-121 | |
| TAIR|locus:2078653 | 825 | AT3G02010 [Arabidopsis thalian | 0.711 | 0.526 | 0.415 | 8.4e-121 | |
| TAIR|locus:2125899 | 990 | AT4G33170 [Arabidopsis thalian | 0.739 | 0.455 | 0.428 | 1.4e-120 | |
| TAIR|locus:2140235 | 781 | AT4G02750 [Arabidopsis thalian | 0.916 | 0.715 | 0.411 | 3.2e-120 | |
| TAIR|locus:2131939 | 792 | MEF29 "AT4G30700" [Arabidopsis | 0.718 | 0.553 | 0.425 | 6.7e-119 | |
| TAIR|locus:2055919 | 786 | AT2G22070 "AT2G22070" [Arabido | 0.931 | 0.722 | 0.402 | 7.7e-119 | |
| TAIR|locus:2096414 | 882 | AT3G03580 [Arabidopsis thalian | 0.762 | 0.527 | 0.408 | 8.5e-119 |
| TAIR|locus:2129361 AT4G14050 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2225 (788.3 bits), Expect = 1.2e-230, P = 1.2e-230
Identities = 411/612 (67%), Positives = 510/612 (83%)
Query: 1 MQISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHL 60
M I HYLH+L++CAR++ T K LHA I+KLG+ Q PL NTL++ YGKC +A +
Sbjct: 1 MLIPHYLHQLQLCARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQV 60
Query: 61 LEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGA 120
+EMP RDH++WAS+LTA NQANL KT+S+FS++ + L+PD FVF++LVKAC +LG+
Sbjct: 61 FDEMPHRDHIAWASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGS 120
Query: 121 TRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSA 180
G+QVH F++S + +D+VVKSSLVDMYAKCGL N+A+AVFDSI++KN++SWTAM+S
Sbjct: 121 IDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSG 180
Query: 181 YARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLV 240
YA+SGRK++A+E+F PV+NL+ WTAL+SG VQS ++AF F EMRRE VDI+DPLV
Sbjct: 181 YAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLV 240
Query: 241 LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR 300
LSSIVGACAN A G+Q+HGLVIALG++SC+FISNA++DMYAKCSD+IAAKDIF RMR
Sbjct: 241 LSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMR 300
Query: 301 RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK 360
+DVVSWTS+IVG AQHGQAE+ LALYD+MVS GVKPNEVTFVGLIYACSHVG V KGR+
Sbjct: 301 HRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRE 360
Query: 361 LFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
LF+SM +DYGI PSLQHYTCLLDLL RSG LDEAENLI MPF PDEPTWAALLSACK
Sbjct: 361 LFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQ 420
Query: 421 RNTEMGTRVANHLLS-LKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYS 479
+MG R+A+HL+S K +DPS+YILLSN+YASA++W VS+ R+ + MEV+K+PG+S
Sbjct: 421 GRGQMGIRIADHLVSSFKLKDPSTYILLSNIYASASLWGKVSEARRKLGEMEVRKDPGHS 480
Query: 480 YIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMK-RRGYVPDTSSVLHDMEQKEKERQ 538
+E K + +FYAGETSHPLK++IF LL +L+ EM+ R GYVPDTS +LHDM+++EKE+
Sbjct: 481 SVEVRKETEVFYAGETSHPLKEDIFRLLKKLEEEMRIRNGYVPDTSWILHDMDEQEKEKL 540
Query: 539 LFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHH 598
LFWHSER AVAYGLLK+VPGT +R+VKNLRVCGDCH+V+K IS IT+REI+VRDATRYHH
Sbjct: 541 LFWHSERSAVAYGLLKAVPGTPIRIVKNLRVCGDCHVVLKHISEITEREIIVRDATRYHH 600
Query: 599 FKDGKCSCNDFW 610
FK GKCSCNDFW
Sbjct: 601 FKGGKCSCNDFW 612
|
|
| TAIR|locus:2056794 REME1 "required for efficiency of mitochondrial editing 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 976 (348.6 bits), Expect = 4.5e-124, Sum P(2) = 4.5e-124
Identities = 182/437 (41%), Positives = 279/437 (63%)
Query: 175 TAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQ-SRNEIDAFYSFIEMRREGV 233
+A++ +A+ G +DA+ +F++ + +W +++ G Q SR+++ A F M+R G
Sbjct: 198 SALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDV-ALELFKRMKRAGF 256
Query: 234 DIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAK 293
I + L+S++ AC A+LELG Q H ++ Y+ L ++NA+VDMY KC + A
Sbjct: 257 -IAEQATLTSVLRACTGLALLELGMQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDAL 313
Query: 294 DIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVG 353
+F +M+ +DV++W+++I G AQ+G ++E L L++ M S+G KPN +T VG+++ACSH G
Sbjct: 314 RVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAG 373
Query: 354 LVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAAL 413
L+ G F+SM + YGI P +HY C++DLL ++G LD+A L+ M EPD TW L
Sbjct: 374 LLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTL 433
Query: 414 LSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVK 473
L AC+ RN + A +++L PED +Y LLSN+YA++ W V ++R M +K
Sbjct: 434 LGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIK 493
Query: 474 KEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQK 533
KEPG S+IE K H F G+ SHP E+ + L +L + GYVP+T+ VL D+E +
Sbjct: 494 KEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDLEGE 553
Query: 534 EKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDA 593
+ E L HSE+LA+A+GL+ V+R+ KNLR+CGDCH+ K+ S++ R IV+RD
Sbjct: 554 QMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRDP 613
Query: 594 TRYHHFKDGKCSCNDFW 610
RYHHF+DGKCSC D+W
Sbjct: 614 IRYHHFQDGKCSCGDYW 630
|
|
| TAIR|locus:2119440 AT4G13650 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1001 (357.4 bits), Expect = 4.0e-123, Sum P(2) = 4.0e-123
Identities = 190/436 (43%), Positives = 279/436 (63%)
Query: 176 AMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDI 235
A+++ Y+R G+ +++ FEQ + W ALVSG QS N +A F+ M REG+D
Sbjct: 631 ALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDN 690
Query: 236 VDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDI 295
+ S V A + A ++ GKQ+H ++ GY+S + NA++ MYAKC I A+
Sbjct: 691 -NNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQ 749
Query: 296 FGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLV 355
F + K+ VSW +II ++HG E L +D+M+ + V+PN VT VG++ ACSH+GLV
Sbjct: 750 FLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLV 809
Query: 356 GKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLS 415
KG F+SM +YG++P +HY C++D+L+R+G L A+ I+ MP +PD W LLS
Sbjct: 810 DKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLS 869
Query: 416 ACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKE 475
AC H+N E+G A+HLL L+PED ++Y+LLSN+YA + W R+ M VKKE
Sbjct: 870 ACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKE 929
Query: 476 PGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEK 535
PG S+IE H FY G+ +HPL DEI E +L GYV D S+L++++ ++K
Sbjct: 930 PGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNELQHEQK 989
Query: 536 ERQLFWHSERLAVAYGLLKSVPGTV-LRVVKNLRVCGDCHIVMKMISRITKREIVVRDAT 594
+ +F HSE+LA+++GLL S+P TV + V+KNLRVC DCH +K +S+++ REI+VRDA
Sbjct: 990 DPIIFIHSEKLAISFGLL-SLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAY 1048
Query: 595 RYHHFKDGKCSCNDFW 610
R+HHF+ G CSC D+W
Sbjct: 1049 RFHHFEGGACSCKDYW 1064
|
|
| TAIR|locus:2082886 EMB2261 "embryo defective 2261" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1006 (359.2 bits), Expect = 1.5e-121, Sum P(2) = 1.5e-121
Identities = 194/445 (43%), Positives = 275/445 (61%)
Query: 170 NSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMR 229
NS +++S + +S R +DA FE +NL + + G ++ N AF E+
Sbjct: 407 NSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEIT 466
Query: 230 REGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDI 289
+ V +S++ AN + G+QIH V+ LG + NA++ MY+KC I
Sbjct: 467 ERELG-VSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSI 525
Query: 290 IAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYAC 349
A +F M ++V+SWTS+I G A+HG A L +++M+ GVKPNEVT+V ++ AC
Sbjct: 526 DTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSAC 585
Query: 350 SHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPT 409
SHVGLV +G + F SM ED+ I P ++HY C++DLL R+G L +A I MPF+ D
Sbjct: 586 SHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLV 645
Query: 410 WAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSV 469
W L AC+ H NTE+G A +L L P +P++YI LSN+YA A W+ +++R+ M
Sbjct: 646 WRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKE 705
Query: 470 MEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHD 529
+ KE G S+IE G H FY G+T+HP +I++ L L E+KR GYVPDT VLH
Sbjct: 706 RNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITEIKRCGYVPDTDLVLHK 765
Query: 530 MEQK----EKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITK 585
+E++ EKER L+ HSE++AVA+GL+ + +RV KNLRVCGDCH MK IS ++
Sbjct: 766 LEEENDEAEKERLLYQHSEKIAVAFGLISTSKSRPVRVFKNLRVCGDCHNAMKYISTVSG 825
Query: 586 REIVVRDATRYHHFKDGKCSCNDFW 610
REIV+RD R+HHFKDGKCSCND+W
Sbjct: 826 REIVLRDLNRFHHFKDGKCSCNDYW 850
|
|
| TAIR|locus:2078653 AT3G02010 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 953 (340.5 bits), Expect = 8.4e-121, Sum P(2) = 8.4e-121
Identities = 181/436 (41%), Positives = 271/436 (62%)
Query: 176 AMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDI 235
+++ YA+ ++A IF+ P R WTAL+SG VQ F +MR +
Sbjct: 391 SLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLR- 449
Query: 236 VDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDI 295
D ++++ A A+FA L LGKQ+H +I G +F + +VDMYAKC I A +
Sbjct: 450 ADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQV 509
Query: 296 FGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLV 355
F M ++ VSW ++I A +G E + + +M+ +G++P+ V+ +G++ ACSH G V
Sbjct: 510 FEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFV 569
Query: 356 GKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLS 415
+G + F++M YGITP +HY C+LDLL R+G EAE L+ MPFEPDE W+++L+
Sbjct: 570 EQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLN 629
Query: 416 ACKHHRNTEMGTRVANHLLSL-KPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKK 474
AC+ H+N + R A L S+ K D ++Y+ +SN+YA+A W+ V V+K M +KK
Sbjct: 630 ACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKK 689
Query: 475 EPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKE 534
P YS++E H+F + + +HP DEI + EL AE++R GY PDTSSV+ D++++
Sbjct: 690 VPAYSWVEVNHKIHVFSSNDQTHPNGDEIVRKINELTAEIEREGYKPDTSSVVQDVDEQM 749
Query: 535 KERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDAT 594
K L +HSERLAVA+ L+ + G + V+KNLR C DCH +K+IS+I KREI VRD +
Sbjct: 750 KIESLKYHSERLAVAFALISTPEGCPIVVMKNLRACRDCHAAIKLISKIVKREITVRDTS 809
Query: 595 RYHHFKDGKCSCNDFW 610
R+HHF +G CSC D+W
Sbjct: 810 RFHHFSEGVCSCGDYW 825
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| TAIR|locus:2125899 AT4G33170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1006 (359.2 bits), Expect = 1.4e-120, Sum P(2) = 1.4e-120
Identities = 194/453 (42%), Positives = 291/453 (64%)
Query: 158 NARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRN 217
+A A+ L VS + +L Y + G A F+ PV + WT ++SG +++
Sbjct: 540 HAYAIKSGYDLDLWVS-SGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGE 598
Query: 218 EIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISN 277
E AF+ F +MR GV + D ++++ A + LE G+QIH + L + F+
Sbjct: 599 EERAFHVFSQMRLMGV-LPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGT 657
Query: 278 AIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKP 337
++VDMYAKC I A +F R+ ++ +W +++VG AQHG+ +ETL L+ +M S G+KP
Sbjct: 658 SLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKP 717
Query: 338 NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENL 397
++VTF+G++ ACSH GLV + K +SM DYGI P ++HY+CL D L R+G + +AENL
Sbjct: 718 DKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENL 777
Query: 398 IKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMW 457
I++M E + LL+AC+ +TE G RVA LL L+P D S+Y+LLSN+YA+A+ W
Sbjct: 778 IESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKW 837
Query: 458 QHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRR 517
+ R +M +VKK+PG+S+IE HIF + S+ + I+ + ++ ++K+
Sbjct: 838 DEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQE 897
Query: 518 GYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVM 577
GYVP+T L D+E++EKER L++HSE+LAVA+GLL + P T +RV+KNLRVCGDCH M
Sbjct: 898 GYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAM 957
Query: 578 KMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
K I+++ REIV+RDA R+H FKDG CSC D+W
Sbjct: 958 KYIAKVYNREIVLRDANRFHRFKDGICSCGDYW 990
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| TAIR|locus:2140235 AT4G02750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1183 (421.5 bits), Expect = 3.2e-120, P = 3.2e-120
Identities = 234/569 (41%), Positives = 347/569 (60%)
Query: 42 NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
N L+ + K + A + M RD VSW +I+T Y Q+ + +F +
Sbjct: 223 NCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDE----SPV 278
Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
Q D F + ++V G + R+ ++ F P ++V ++++ Y + A+
Sbjct: 279 Q-DVFTWTAMVS--GYI-QNRMVEEARELFDKMPE-RNEVSWNAMLAGYVQGERMEMAKE 333
Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
+FD + +N +W M++ YA+ G+ +A +F++ P R+ W A+++G QS + +A
Sbjct: 334 LFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEA 393
Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
F++M REG + + SS + CA+ LELGKQ+HG ++ GYE+ F+ NA++
Sbjct: 394 LRLFVQMEREGGRL-NRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLL 452
Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
MY KC I A D+F M KD+VSW ++I G ++HG E L ++ M G+KP++ T
Sbjct: 453 MYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDAT 512
Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
V ++ ACSH GLV KGR+ F +M +DYG+ P+ QHY C++DLL R+G L++A NL+K M
Sbjct: 513 MVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNM 572
Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461
PFEPD W LL A + H NTE+ A+ + +++PE+ Y+LLSN+YAS+ W V
Sbjct: 573 PFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVG 632
Query: 462 KVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVP 521
K+R M VKK PGYS+IE +H F G+ HP KDEIF L ELD MK+ GYV
Sbjct: 633 KLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVS 692
Query: 522 DTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMIS 581
TS VLHD+E++EKER + +HSERLAVAYG+++ G +RV+KNLRVC DCH +K ++
Sbjct: 693 KTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMA 752
Query: 582 RITKREIVVRDATRYHHFKDGKCSCNDFW 610
RIT R I++RD R+HHFKDG CSC D+W
Sbjct: 753 RITGRLIILRDNNRFHHFKDGSCSCGDYW 781
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| TAIR|locus:2131939 MEF29 "AT4G30700" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1032 (368.3 bits), Expect = 6.7e-119, Sum P(2) = 6.7e-119
Identities = 187/440 (42%), Positives = 290/440 (65%)
Query: 171 SVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRR 230
SVS TA+ + Y++ + A ++F+++P ++L W A++SG Q+ DA F EM++
Sbjct: 355 SVS-TALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQK 413
Query: 231 EGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDII 290
+P+ ++ I+ ACA L LGK +H LV + +ES +++S A++ MYAKC I
Sbjct: 414 SEFS-PNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIA 472
Query: 291 AAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACS 350
A+ +F M +K+ V+W ++I G HGQ +E L ++ EM+++G+ P VTF+ ++YACS
Sbjct: 473 EARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACS 532
Query: 351 HVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTW 410
H GLV +G ++F SMI YG PS++HY C++D+L R+GHL A I+AM EP W
Sbjct: 533 HAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVW 592
Query: 411 AALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVM 470
LL AC+ H++T + V+ L L P++ ++LLSN++++ + + VR+
Sbjct: 593 ETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKR 652
Query: 471 EVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDM 530
++ K PGY+ IE G+ H+F +G+ SHP EI+E L +L+ +M+ GY P+T LHD+
Sbjct: 653 KLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDV 712
Query: 531 EQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVV 590
E++E+E + HSERLA+A+GL+ + PGT +R++KNLRVC DCH V K+IS+IT+R IVV
Sbjct: 713 EEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVV 772
Query: 591 RDATRYHHFKDGKCSCNDFW 610
RDA R+HHFKDG CSC D+W
Sbjct: 773 RDANRFHHFKDGVCSCGDYW 792
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| TAIR|locus:2055919 AT2G22070 "AT2G22070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1170 (416.9 bits), Expect = 7.7e-119, P = 7.7e-119
Identities = 230/572 (40%), Positives = 350/572 (61%)
Query: 42 NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
N +I + + + A E+M +RD V+W S+++ +NQ + + IFS ML L
Sbjct: 216 NAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLL 275
Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
PD F AS++ AC +L +GKQ+H+ V + F +V ++L+ MY++CG AR
Sbjct: 276 SPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARR 335
Query: 162 VFDSIKLKNSV--SWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEI 219
+ + K+ +TA+L Y + G A IF R++ WTA++ G Q +
Sbjct: 336 LIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYG 395
Query: 220 DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAI 279
+A F M G + L++++ ++ A L GKQIHG + G + +SNA+
Sbjct: 396 EAINLFRSMVGGG-QRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNAL 454
Query: 280 VDMYAKCSDIIAAKDIFGRMR-RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN 338
+ MYAK +I +A F +R +D VSWTS+I+ AQHG AEE L L++ M+ G++P+
Sbjct: 455 ITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPD 514
Query: 339 EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLI 398
+T+VG+ AC+H GLV +GR+ F M + I P+L HY C++DL R+G L EA+ I
Sbjct: 515 HITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFI 574
Query: 399 KAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQ 458
+ MP EPD TW +LLSAC+ H+N ++G A LL L+PE+ +Y L+N+Y++ W+
Sbjct: 575 EKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWE 634
Query: 459 HVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRG 518
+K+RK M VKKE G+S+IE H+F + +HP K+EI+ + ++ E+K+ G
Sbjct: 635 EAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMG 694
Query: 519 YVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMK 578
YVPDT+SVLHD+E++ KE+ L HSE+LA+A+GL+ + T LR++KNLRVC DCH +K
Sbjct: 695 YVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIK 754
Query: 579 MISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
IS++ REI+VRD TR+HHFKDG CSC D+W
Sbjct: 755 FISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786
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| TAIR|locus:2096414 AT3G03580 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 966 (345.1 bits), Expect = 8.5e-119, Sum P(2) = 8.5e-119
Identities = 192/470 (40%), Positives = 284/470 (60%)
Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
V + L D+ GL +N + I + SVS A++ YA+ G D+++IF +
Sbjct: 417 VSTRLADLKFGKGLHSNG--IKSGICIDLSVS-NALIDMYAKCGEVGDSLKIFSSMGTGD 473
Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
W ++S V+ + +MR+ V + D + CA+ A LGK+IH
Sbjct: 474 TVTWNTVISACVRFGDFATGLQVTTQMRKSEV-VPDMATFLVTLPMCASLAAKRLGKEIH 532
Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
++ GYES L I NA+++MY+KC + + +F RM R+DVV+WT +I +G+ E
Sbjct: 533 CCLLRFGYESELQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGE 592
Query: 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381
+ L + +M +G+ P+ V F+ +IYACSH GLV +G F+ M Y I P ++HY C+
Sbjct: 593 KALETFADMEKSGIVPDSVVFIAIIYACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACV 652
Query: 382 LDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDP 441
+DLLSRS + +AE I+AMP +PD WA++L AC+ + E RV+ ++ L P+DP
Sbjct: 653 VDLLSRSQKISKAEEFIQAMPIKPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDP 712
Query: 442 SSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKD 501
IL SN YA+ W VS +RK + + K PGYS+IE GK H+F +G+ S P +
Sbjct: 713 GYSILASNAYAALRKWDKVSLIRKSLKDKHITKNPGYSWIEVGKNVHVFSSGDDSAPQSE 772
Query: 502 EIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFW-HSERLAVAYGLLKSVPGTV 560
I++ L L + M + GY+PD V ++E++E++R+L HSERLA+A+GLL + PGT
Sbjct: 773 AIYKSLEILYSLMAKEGYIPDPREVSQNLEEEEEKRRLICGHSERLAIAFGLLNTEPGTP 832
Query: 561 LRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
L+V+KNLRVCGDCH V K+IS+I REI+VRDA R+H FKDG CSC D W
Sbjct: 833 LQVMKNLRVCGDCHEVTKLISKIVGREILVRDANRFHLFKDGTCSCKDRW 882
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O23266 | PP308_ARATH | No assigned EC number | 0.6715 | 1.0 | 0.9967 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | gw1.I.3322.1 | hypothetical protein (609 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 610 | |||
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-151 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-132 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-51 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-46 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-29 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 2e-22 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-11 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-09 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-09 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-09 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.001 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.001 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 452 bits (1164), Expect = e-151
Identities = 203/610 (33%), Positives = 338/610 (55%), Gaps = 33/610 (5%)
Query: 1 MQISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHL 60
+ S Y + C + VK ++ + G + N ++ + KC ++ A L
Sbjct: 121 LPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRL 180
Query: 61 LEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGA 120
+EMP+R+ SW +I+ A ++ ++F M F +++A LG+
Sbjct: 181 FDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPR-TFVVMLRASAGLGS 239
Query: 121 TRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSA 180
R G+Q+H C + + D V +L+DMY+KCG +AR VFD + K +V+W +ML+
Sbjct: 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAG 299
Query: 181 YARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLV 240
YA G ++A+ ++ EMR GV I D
Sbjct: 300 YALHGYSEEALCLYY-------------------------------EMRDSGVSI-DQFT 327
Query: 241 LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR 300
S ++ + A+LE KQ H +I G+ + + A+VD+Y+K + A+++F RM
Sbjct: 328 FSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP 387
Query: 301 RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK 360
RK+++SW ++I G HG+ + + +++ M++ GV PN VTF+ ++ AC + GL +G +
Sbjct: 388 RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWE 447
Query: 361 LFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
+F+SM E++ I P HY C+++LL R G LDEA +I+ PF+P WAALL+AC+ H
Sbjct: 448 IFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIH 507
Query: 421 RNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSY 480
+N E+G A L + PE ++Y++L N+Y S+ +KV + + + P ++
Sbjct: 508 KNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTW 567
Query: 481 IEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLF 540
IE K H F++G+ HP EI++ L EL E+ GYV + + +L D+++ E++
Sbjct: 568 IEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGR 627
Query: 541 WHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFK 600
+HSE+LA+A+GL+ + T L++ ++ R+C DCH V+K I+ +TKREIVVRDA+R+HHFK
Sbjct: 628 YHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFK 687
Query: 601 DGKCSCNDFW 610
GKCSC D+W
Sbjct: 688 LGKCSCGDYW 697
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Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 406 bits (1045), Expect = e-132
Identities = 205/589 (34%), Positives = 309/589 (52%), Gaps = 42/589 (7%)
Query: 23 KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
+ +H ++K G + N+LI Y A + M +D VSW ++++ Y +
Sbjct: 308 REMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKN 367
Query: 83 NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
LP K + ++ M D + PD AS++ AC LG +G ++H VV
Sbjct: 368 GLPDKALETYALM-EQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVV 426
Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
++L++MY+KC A+E+F P +++
Sbjct: 427 ANALIEMYSKCK-------------------------------CIDKALEVFHNIPEKDV 455
Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDP--LVLSSIVGACANFAVLELGKQI 260
WT++++GL + +A F +M + P + L + + ACA L GK+I
Sbjct: 456 ISWTSIIAGLRLNNRCFEALIFFRQMLLT----LKPNSVTLIAALSACARIGALMCGKEI 511
Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
H V+ G F+ NA++D+Y +C + A + F KDVVSW ++ G HG+
Sbjct: 512 HAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN-SHEKDVVSWNILLTGYVAHGKG 570
Query: 321 EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380
+ L++ MV +GV P+EVTF+ L+ ACS G+V +G + F SM E Y ITP+L+HY C
Sbjct: 571 SMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYAC 630
Query: 381 LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440
++DLL R+G L EA N I MP PD W ALL+AC+ HR+ E+G A H+ L P
Sbjct: 631 VVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNS 690
Query: 441 PSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLK 500
YILL N+YA A W V++VRK M + +PG S++E H F + SHP
Sbjct: 691 VGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQI 750
Query: 501 DEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFW-HSERLAVAYGLLKSVPGT 559
EI +L +MK G SS + ++E + + +F HSERLA+A+GL+ +VPG
Sbjct: 751 KEINTVLEGFYEKMKASGLAGSESSSMDEIEVSKDD--IFCGHSERLAIAFGLINTVPGM 808
Query: 560 VLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCND 608
+ V KNL +C +CH +K IS+I +REI VRD ++HHFKDG+CSC D
Sbjct: 809 PIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 190 bits (483), Expect = 2e-51
Identities = 122/420 (29%), Positives = 202/420 (48%), Gaps = 45/420 (10%)
Query: 10 LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
LR C + +HA +++ G + N LI Y KC V A + + MP+RD
Sbjct: 194 LRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDC 253
Query: 70 VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
+SW ++++ Y + + + +F TM L + PD S++ AC LG RLG+++H
Sbjct: 254 ISWNAMISGYFENGECLEGLELFFTMRELS-VDPDLMTITSVISACELLGDERLGREMHG 312
Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
V + F D V +SL+ MY G A VF ++ K++VSWTAM+S Y ++G
Sbjct: 313 YVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDK 372
Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
A+E + M ++ V D + ++S++ ACA
Sbjct: 373 ALETYAL-------------------------------MEQDNV-SPDEITIASVLSACA 400
Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
L++G ++H L G S + ++NA+++MY+KC I A ++F + KDV+SWTS
Sbjct: 401 CLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTS 460
Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL----FKSM 365
II G + + E L + +M+ +KPN VT + + AC+ +G + G+++ ++
Sbjct: 461 IIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTG 519
Query: 366 IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEM 425
I G P+ LLDL R G ++ A N + E D +W LL+ H M
Sbjct: 520 IGFDGFLPN-----ALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSM 572
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 175 bits (444), Expect = 3e-46
Identities = 108/400 (27%), Positives = 195/400 (48%), Gaps = 39/400 (9%)
Query: 57 AHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACG 116
A ++ +MP+RD SW ++ Y +A + + ++ ML ++PD + F +++ CG
Sbjct: 140 AWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAG-VRPDVYTFPCVLRTCG 198
Query: 117 SLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTA 176
+ G++VHA V F D V ++L+ MY KCG +AR VFD + ++ +SW A
Sbjct: 199 GIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNA 258
Query: 177 MLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIV 236
M+S Y +G + +E+F MR VD
Sbjct: 259 MISGYFENGECLEGLELF-------------------------------FTMRELSVD-P 286
Query: 237 DPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIF 296
D + ++S++ AC LG+++HG V+ G+ + + N+++ MY A+ +F
Sbjct: 287 DLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVF 346
Query: 297 GRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVG 356
RM KD VSWT++I G ++G ++ L Y M V P+E+T ++ AC+ +G +
Sbjct: 347 SRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLD 406
Query: 357 KGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
G KL + + E G+ + L+++ S+ +D+A + +P E D +W ++++
Sbjct: 407 VGVKLHE-LAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVISWTSIIAG 464
Query: 417 -CKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAA 455
++R E LL+LK P+S L++ + A A
Sbjct: 465 LRLNNRCFEALIFFRQMLLTLK---PNSVTLIAALSACAR 501
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 6e-29
Identities = 73/245 (29%), Positives = 122/245 (49%), Gaps = 9/245 (3%)
Query: 176 AMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGV-- 233
AMLS + R G A +F + P R+LF W LV G ++ +A + M GV
Sbjct: 126 AMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRP 185
Query: 234 DIVD-PLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAA 292
D+ P VL + C L G+++H V+ G+E + + NA++ MY KC D+++A
Sbjct: 186 DVYTFPCVLRT----CGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSA 241
Query: 293 KDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHV 352
+ +F RM R+D +SW ++I G ++G+ E L L+ M V P+ +T +I AC +
Sbjct: 242 RLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELL 301
Query: 353 GLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAA 412
G GR++ +++ G + L+ + G EAE + M + D +W A
Sbjct: 302 GDERLGREMHGYVVKT-GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK-DAVSWTA 359
Query: 413 LLSAC 417
++S
Sbjct: 360 MISGY 364
|
Length = 857 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 92.5 bits (230), Expect = 2e-22
Identities = 45/122 (36%), Positives = 65/122 (53%), Gaps = 17/122 (13%)
Query: 485 KGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQ-----L 539
+G+ SHP E EL +K G VP+T + HD++ +E L
Sbjct: 6 SEGKKTLSGDGSHPTSKE------ELFQRIKVEGVVPETKEIGHDVDAEEFRDNGIKGKL 59
Query: 540 FW-HSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHH 598
H+E+ A+AYGLL + VL+ R+CGDCH + I++ T REI+VRD +R+HH
Sbjct: 60 LASHAEKQALAYGLLTTRIIKVLK-----RMCGDCHEFFRYIAKYTGREIIVRDPSRFHH 114
Query: 599 FK 600
FK
Sbjct: 115 FK 116
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 58.2 bits (142), Expect = 4e-11
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 302 KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSH 351
DVV++ ++I G + G+ EE L L++EM G+KPN T+ LI
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 2e-09
Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 2/115 (1%)
Query: 10 LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
L CAR + K +HA +++ G+ G LPN L+D Y +C + YA + ++D
Sbjct: 496 LSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF-NSHEKDV 554
Query: 70 VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG 124
VSW +LT Y + +F+ M+ + PD F SL+ AC G G
Sbjct: 555 VSWNILLTGYVAHGKGSMAVELFNRMVESG-VNPDEVTFISLLCACSRSGMVTQG 608
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 5e-09
Identities = 70/307 (22%), Positives = 122/307 (39%), Gaps = 61/307 (19%)
Query: 100 KLQPDHFVFASLVKACGSLGATRLGKQVHACF-VLS-------PFCDDDVVKSSLVDMYA 151
++PD VF +L+ ACG GA V F VL+ P D + +L+ A
Sbjct: 537 NVKPDRVVFNALISACGQSGA------VDRAFDVLAEMKAETHPIDPDHITVGALMKACA 590
Query: 152 KCGLPNNARAVFDSIKLKNSVS-----WTAMLSAYARSGRKKDAMEIFEQ------APVR 200
G + A+ V+ I + ++ +T +++ ++ G A+ I++ P
Sbjct: 591 NAGQVDRAKEVYQMIH-EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP-D 648
Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI 260
+F +ALV + + AF + R++G+ + + SS++GAC+N + ++
Sbjct: 649 EVFF-SALVDVAGHAGDLDKAFEILQDARKQGIK-LGTVSYSSLMGACSNAKNWKKALEL 706
Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
YE DI + K R V + ++I + Q
Sbjct: 707 --------YE-----------------DIKSIK------LRPTVSTMNALITALCEGNQL 735
Query: 321 EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380
+ L + EM G+ PN +T+ L+ A G L ED GI P+L C
Sbjct: 736 PKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRC 794
Query: 381 LLDLLSR 387
+ L R
Sbjct: 795 ITGLCLR 801
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 6e-09
Identities = 67/266 (25%), Positives = 121/266 (45%), Gaps = 35/266 (13%)
Query: 174 WTAMLSAYARSGRKKDAM-EIFEQAPVR----NLFLWTALVSGLVQSRNEIDAFYSFIEM 228
+T ++S A+SG K DAM E+F + N+ + AL+ G ++ AF ++ M
Sbjct: 475 YTTLISTCAKSG-KVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIM 533
Query: 229 RREGVDIVDPLVLSSIVGACAN-------FAVL-ELGKQIHGLV---IALGYESCLFISN 277
R + V D +V ++++ AC F VL E+ + H + I +G
Sbjct: 534 RSKNVK-PDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVG--------- 583
Query: 278 AIVDMYAKCSDIIAAKDIFGRMRRKDVVS----WTSIIVGTAQHGQAEETLALYDEMVSA 333
A++ A + AK+++ + ++ +T + +Q G + L++YD+M
Sbjct: 584 ALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK 643
Query: 334 GVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDE 393
GVKP+EV F L+ H G + K ++ + GI Y+ L+ S + + +
Sbjct: 644 GVKPDEVFFSALVDVAGHAGDLDKAFEILQDA-RKQGIKLGTVSYSSLMGACSNAKNWKK 702
Query: 394 AENL---IKAMPFEPDEPTWAALLSA 416
A L IK++ P T AL++A
Sbjct: 703 ALELYEDIKSIKLRPTVSTMNALITA 728
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 4e-08
Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 16/141 (11%)
Query: 292 AKDIFGRMR----------RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
++DI G +R + D +T++I A+ G+ + ++ EMV+AGV+ N T
Sbjct: 450 SQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHT 509
Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
F LI C+ G V K + M + P + L+ +SG +D A +++ M
Sbjct: 510 FGALIDGCARAGQVAKAFGAYGIMRSK-NVKPDRVVFNALISACGQSGAVDRAFDVLAEM 568
Query: 402 -----PFEPDEPTWAALLSAC 417
P +PD T AL+ AC
Sbjct: 569 KAETHPIDPDHITVGALMKAC 589
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 0.001
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 337 PNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSR 387
P+ VT+ LI G V + KLF M + GI P++ Y+ L+D L +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKK-RGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 36.6 bits (86), Expect = 0.001
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 378 YTCLLDLLSRSGHLDEAENLIKAMP---FEPDEPTWAALLSAC 417
Y L+D + G ++EA L M +P+ T++ L+
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 36.6 bits (86), Expect = 0.001
Identities = 10/50 (20%), Positives = 28/50 (56%), Gaps = 8/50 (16%)
Query: 169 KNSVSWTAMLSAYARSGRKKDAMEIFEQ------APVRNLFLWTALVSGL 212
+ V++ ++ Y + G+ ++A+++F + P N++ ++ L+ GL
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKP--NVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.001
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE 339
V++ ++I G + G+ EE L L+ EM G++P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 7/25 (28%), Positives = 21/25 (84%)
Query: 172 VSWTAMLSAYARSGRKKDAMEIFEQ 196
V++ +++S Y ++G+ ++A+E+F++
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKE 25
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 610 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.98 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 99.97 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.91 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.91 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.91 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.88 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.87 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.86 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.86 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.85 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.84 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.84 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.83 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.83 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.83 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.79 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.79 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.79 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.72 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.7 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.7 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.66 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.62 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.58 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.58 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.55 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.54 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.53 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.51 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.51 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.49 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.48 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.48 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.47 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.47 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.45 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.45 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.45 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.44 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.43 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.42 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.38 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.36 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.35 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.34 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.34 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.32 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.27 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.26 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.25 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.23 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.22 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.22 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.21 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.2 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.19 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.16 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.14 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.14 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.13 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.12 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.1 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.09 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.07 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.05 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.0 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.98 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.96 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.94 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.94 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.93 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.91 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.91 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.87 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.86 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.85 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.84 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.82 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.82 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.81 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.81 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.8 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.79 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.79 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.78 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.77 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.75 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.75 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.73 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.71 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.67 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.65 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.6 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.59 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.54 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.53 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.51 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.51 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.5 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.49 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.47 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.45 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.45 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.43 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.43 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.39 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.38 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.36 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.36 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.33 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.33 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.32 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.31 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.31 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.3 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.28 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.28 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.27 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.23 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.23 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.22 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.21 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.18 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.18 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.17 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.12 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.1 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.08 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.05 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.05 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.02 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.02 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.01 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.99 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.99 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.87 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.84 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.84 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.83 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.81 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.76 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.76 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.74 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.74 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.72 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.7 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.66 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.64 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.58 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.57 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.56 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.53 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.45 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.44 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.43 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.42 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.42 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.41 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.4 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.4 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.39 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.34 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.31 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.25 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.24 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.23 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.21 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.16 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.14 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.14 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.13 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.13 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.13 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.13 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.12 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.12 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.1 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.09 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.08 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.06 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.04 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.04 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.04 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.99 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.99 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.97 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.97 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.96 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.96 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.91 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.9 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.89 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.88 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.86 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.82 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.81 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.79 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.7 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.64 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.57 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.57 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.48 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.47 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.45 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.33 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.32 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.25 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.23 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.14 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.04 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.01 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.96 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.94 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.86 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 95.85 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.83 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.8 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.73 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.62 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.45 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.44 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.33 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.24 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.17 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.15 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.12 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.05 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.02 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.87 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 94.69 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.69 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.59 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.54 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 94.24 | |
| PRK09687 | 280 | putative lyase; Provisional | 94.22 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.2 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.16 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.92 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.9 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.74 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 93.61 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 93.54 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 93.52 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.5 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 93.4 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.39 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.34 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.28 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.13 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.06 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.0 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 92.99 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 92.93 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 92.87 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 92.72 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 92.55 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 92.44 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 92.05 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 91.98 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 91.9 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 91.84 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 91.73 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 91.65 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 91.64 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 91.62 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 91.25 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 91.23 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 90.97 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 90.83 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 90.74 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 90.67 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 90.57 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 90.56 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 90.54 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 89.73 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 89.69 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 89.43 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 89.1 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 88.93 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 88.91 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 88.86 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 88.48 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 88.27 | |
| PRK09687 | 280 | putative lyase; Provisional | 88.19 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 88.13 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 88.06 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 87.88 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 87.77 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 87.59 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 87.49 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 87.34 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 86.84 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 86.64 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 86.55 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 86.34 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 85.79 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 85.72 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 85.23 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 85.05 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 84.71 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 84.57 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 84.35 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 84.05 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 83.7 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 83.3 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 81.64 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 81.53 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 80.3 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 80.14 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 80.01 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-119 Score=1006.30 Aligned_cols=601 Identities=37% Similarity=0.686 Sum_probs=580.5
Q ss_pred hhhHHHhhhhhhccCChHHHHHHHHHHHHhCCCCCCchHHHHHHHhhcCCChHHHHHHHccCCCCCcchHHHHHHHHHcC
Q 037713 3 ISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82 (610)
Q Consensus 3 ~~~y~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~ 82 (610)
..+|..+|++|+..+++..++++|..+.+.|+.||++++|+||++|+++|++++|+++|++|++||+++||+||.+|++.
T Consensus 187 ~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~ 266 (857)
T PLN03077 187 VYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFEN 266 (857)
T ss_pred hhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhC
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHH
Q 037713 83 NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAV 162 (610)
Q Consensus 83 g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 162 (610)
|++++|+++|.+|.+.| +.||..||+.++.+|++.|+++.|.++|..+.+.|+.||..+||+|+++|+++|++++|.++
T Consensus 267 g~~~eAl~lf~~M~~~g-~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~v 345 (857)
T PLN03077 267 GECLEGLELFFTMRELS-VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKV 345 (857)
T ss_pred CCHHHHHHHHHHHHHcC-CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHH
Confidence 99999999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCChhhHHHHHHHH-------------------------------------------------------------
Q 037713 163 FDSIKLKNSVSWTAMLSAY------------------------------------------------------------- 181 (610)
Q Consensus 163 ~~~m~~~~~~~~~~li~~~------------------------------------------------------------- 181 (610)
|++|..+|+++||++|.+|
T Consensus 346 f~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~ 425 (857)
T PLN03077 346 FSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVV 425 (857)
T ss_pred HhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchH
Confidence 9999988888888888877
Q ss_pred ---------HhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccc
Q 037713 182 ---------ARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFA 252 (610)
Q Consensus 182 ---------~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~ 252 (610)
+++|++++|.++|++|.++|+++||++|.+|+++|+.++|+++|++|.. +++ ||..||+.++.+|++.|
T Consensus 426 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~-pd~~t~~~lL~a~~~~g 503 (857)
T PLN03077 426 VANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLK-PNSVTLIAALSACARIG 503 (857)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCC-CCHhHHHHHHHHHhhhc
Confidence 4556666777777777778889999999999999999999999999986 577 99999999999999999
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037713 253 VLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVS 332 (610)
Q Consensus 253 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 332 (610)
+++.++++|..+.+.|+.++..++|+|+++|+++|++++|.++|+.+ .+|.++||+||.+|+++|+.++|+++|++|.+
T Consensus 504 ~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~ 582 (857)
T PLN03077 504 ALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVE 582 (857)
T ss_pred hHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 037713 333 AGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAA 412 (610)
Q Consensus 333 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ 412 (610)
.|+.||..||+.++.+|++.|++++|.++|+.|.+.+|+.|+..+|++|+++|++.|++++|.+++++|+++||..+|++
T Consensus 583 ~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~a 662 (857)
T PLN03077 583 SGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGA 662 (857)
T ss_pred cCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHH
Confidence 99999999999999999999999999999999997789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhCCCccCCcccEEEECCEEEEEEe
Q 037713 413 LLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYA 492 (610)
Q Consensus 413 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~ 492 (610)
|+.+|..+|+.+.|+.+.+++++++|+++..|..|+++|++.|+|++|.++++.|+++|++++||+|||++++.+|.|.+
T Consensus 663 Ll~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~ 742 (857)
T PLN03077 663 LLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLT 742 (857)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHCCcccCCccccccCChhhhhhhhhhhhHHHHHHHhhccCCCCCcEEEEccccccCc
Q 037713 493 GETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGD 572 (610)
Q Consensus 493 ~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~l~~~~~ 572 (610)
||.+||+.++|+.++++|..+|++.||.||+..++ +.++++|+..++.||||||+|||||+|++|+||||+||||+|+|
T Consensus 743 ~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~d 821 (857)
T PLN03077 743 DDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCEN 821 (857)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCcc
Confidence 99999999999999999999999999999999888 44788999999999999999999999999999999999999999
Q ss_pred chHHHHHHhhhcCeeEEEeCCCccccccCcccccCC
Q 037713 573 CHIVMKMISRITKREIVVRDATRYHHFKDGKCSCND 608 (610)
Q Consensus 573 ~~~~~~~~s~~~~~~~~~~d~~~~h~~~~g~csc~~ 608 (610)
||+++|+||++.+|+|||||.+|||||++|+|||||
T Consensus 822 ch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 822 CHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred HHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 999999999999999999999999999999999998
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-119 Score=979.35 Aligned_cols=574 Identities=34% Similarity=0.649 Sum_probs=496.7
Q ss_pred hhHHHhhhhhhccCChHHHHHHHHHHHHhCCCCCCchHHHHHHHhhcCCChHHHHHHHccCCCCCcchHHHHHHHHHcCC
Q 037713 4 SHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQAN 83 (610)
Q Consensus 4 ~~y~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g 83 (610)
.+|..+|.+|++.++++.+.++|..+.+.|+.||+.++|.|+++|+++|++++|+++|++|++||+++||++|.+|++.|
T Consensus 124 ~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g 203 (697)
T PLN03081 124 STYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAG 203 (697)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCc
Confidence 34555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHH
Q 037713 84 LPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVF 163 (610)
Q Consensus 84 ~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 163 (610)
++++|+++|++|.+.| +.||..||+.++.+|++.|..+.+.++|..+.+.|+.+|..++|+|+++|+
T Consensus 204 ~~~~A~~lf~~M~~~g-~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~------------ 270 (697)
T PLN03081 204 NYREAFALFREMWEDG-SDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYS------------ 270 (697)
T ss_pred CHHHHHHHHHHHHHhC-CCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHH------------
Confidence 5555555555555555 555555555555555555555555555555555555555555555555555
Q ss_pred HhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHH
Q 037713 164 DSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSS 243 (610)
Q Consensus 164 ~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ 243 (610)
++|++++|.++|++|+.+|+++||+||.+|++.|++++|+++|++|.+.|+. ||..||++
T Consensus 271 -------------------k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~-pd~~t~~~ 330 (697)
T PLN03081 271 -------------------KCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS-IDQFTFSI 330 (697)
T ss_pred -------------------HCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CCHHHHHH
Confidence 5555566666666777778888888888899999999999999999999999 99999999
Q ss_pred HHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHH
Q 037713 244 IVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEET 323 (610)
Q Consensus 244 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 323 (610)
++.+|++.|.++.|.++|+.+.+.|++||..++++|+++|+++|++++|.++|++|.++|+.+||+||.+|+++|+.++|
T Consensus 331 ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A 410 (697)
T PLN03081 331 MIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKA 410 (697)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 037713 324 LALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPF 403 (610)
Q Consensus 324 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 403 (610)
+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+++|+.|+..+|++|+++|++.|++++|.+++++|++
T Consensus 411 ~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~ 490 (697)
T PLN03081 411 VEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPF 490 (697)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhCCCccCCcccEEEE
Q 037713 404 EPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEF 483 (610)
Q Consensus 404 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~ 483 (610)
.|+..+|++|+.+|+.+|+++.|..+++++++++|++..+|..|+++|++.|+|++|.++++.|+++|+++.||+||+++
T Consensus 491 ~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~ 570 (697)
T PLN03081 491 KPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEV 570 (697)
T ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEeccCCCCChHHHHHHHHHHHHHHHHCCcccCCccccccCChhhhhhhhhhhhHHHHHHHhhccCCCCCcEEE
Q 037713 484 GKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRV 563 (610)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~ 563 (610)
++.+|.|.+||..||+.+++++++.++..+|++.||.||+.++++++++++|+..++.||||||+|||||+++||.||||
T Consensus 571 ~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i 650 (697)
T PLN03081 571 KKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQI 650 (697)
T ss_pred CCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccccccCcchHHHHHHhhhcCeeEEEeCCCccccccCcccccCCCC
Q 037713 564 VKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610 (610)
Q Consensus 564 ~~~l~~~~~~~~~~~~~s~~~~~~~~~~d~~~~h~~~~g~csc~~~~ 610 (610)
+||||+|+|||+|+|+||++++|+|||||.+|||||+||+|||||||
T Consensus 651 ~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 651 TQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred ecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 99999999999999999999999999999999999999999999999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-71 Score=619.42 Aligned_cols=581 Identities=24% Similarity=0.377 Sum_probs=500.3
Q ss_pred hhhHHHhhhhhhccCChHHHHHHHHHHHHhCCCCCCchHHHHHHHhhcCCChHHHHHHHccCCCCCcchHHHHHHHHHcC
Q 037713 3 ISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82 (610)
Q Consensus 3 ~~~y~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~ 82 (610)
..+|..++++|.+.+.++.|.++|..+.+.|..++..++|+|+++|+++|+++.|+++|++|++||+++||++|.+|++.
T Consensus 86 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~ 165 (857)
T PLN03077 86 EDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKA 165 (857)
T ss_pred hhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhC
Confidence 34688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHH
Q 037713 83 NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAV 162 (610)
Q Consensus 83 g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 162 (610)
|++++|+++|++|...| +.||.+||++++++|++.+++..+.+++..+++.|+.||..++|+|+++|+++|++++|.++
T Consensus 166 g~~~~A~~~f~~M~~~g-~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~l 244 (857)
T PLN03077 166 GYFDEALCLYHRMLWAG-VRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLV 244 (857)
T ss_pred CCHHHHHHHHHHHHHcC-CCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHH
Confidence 99999999999999998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCChhhHHHHHHHH-------------------------------------------------------------
Q 037713 163 FDSIKLKNSVSWTAMLSAY------------------------------------------------------------- 181 (610)
Q Consensus 163 ~~~m~~~~~~~~~~li~~~------------------------------------------------------------- 181 (610)
|++|+.+|+++||+||.+|
T Consensus 245 f~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~ 324 (857)
T PLN03077 245 FDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVS 324 (857)
T ss_pred HhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchH
Confidence 9999988877777777766
Q ss_pred ---------HhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccc
Q 037713 182 ---------ARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFA 252 (610)
Q Consensus 182 ---------~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~ 252 (610)
+++|++++|.++|++|..+|+++||+||.+|++.|++++|+++|++|.+.|+. ||..||+.++.+|++.|
T Consensus 325 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~-Pd~~t~~~ll~a~~~~g 403 (857)
T PLN03077 325 VCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVS-PDEITIASVLSACACLG 403 (857)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-CCceeHHHHHHHHhccc
Confidence 45677777888888888889999999999999999999999999999999999 99999999999999999
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037713 253 VLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVS 332 (610)
Q Consensus 253 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 332 (610)
+++.|.++|+.+.+.|+.|+..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|..
T Consensus 404 ~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~ 483 (857)
T PLN03077 404 DLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL 483 (857)
T ss_pred hHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred cCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 037713 333 AGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAA 412 (610)
Q Consensus 333 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ 412 (610)
+++||..||+.++.+|++.|.++.+.+++..+.+. |+.+|..++++|+++|+++|++++|.++|+++ .||..+|++
T Consensus 484 -~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~ 559 (857)
T PLN03077 484 -TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNI 559 (857)
T ss_pred -CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHH
Confidence 69999999999999999999999999999999985 99999999999999999999999999999999 799999999
Q ss_pred HHHHHHhcCchhHHHHHHHHHhcCC-CCCCcchHhHHHHhhhhcchhHHHHHHHHHh-hCCCccCCcccEEEECCEEEEE
Q 037713 413 LLSACKHHRNTEMGTRVANHLLSLK-PEDPSSYILLSNVYASAAMWQHVSKVRKLMS-VMEVKKEPGYSYIEFGKGSHIF 490 (610)
Q Consensus 413 ll~~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~~~~~~~~~s~~~~~~~~~~~ 490 (610)
++.+|+++|+.++|.++|++|.+.+ .+|..+|..++.+|.+.|++++|.++++.|. +.|+.|+...-.. .
T Consensus 560 lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~--------l 631 (857)
T PLN03077 560 LLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYAC--------V 631 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHH--------H
Confidence 9999999999999999999998644 2356899999999999999999999999998 6788765421100 0
Q ss_pred EeccCCCCChHHHHHHHHHHHHHHHHCCcccCCccccccCChhhhhhhhhhhhHHHH-HHHhhccCCCCCcEEEEccccc
Q 037713 491 YAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLA-VAYGLLKSVPGTVLRVVKNLRV 569 (610)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~la-~~~~~~~~~~~~~~~~~~~l~~ 569 (610)
+......+..+++. +++++| +..||...+...+..+.....+-. .|+.+ ..+.+.+..++..+.+..-+..
T Consensus 632 v~~l~r~G~~~eA~----~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e~-~e~~a~~l~~l~p~~~~~y~ll~n~ya~ 703 (857)
T PLN03077 632 VDLLGRAGKLTEAY----NFINKM---PITPDPAVWGALLNACRIHRHVEL-GELAAQHIFELDPNSVGYYILLCNLYAD 703 (857)
T ss_pred HHHHHhCCCHHHHH----HHHHHC---CCCCCHHHHHHHHHHHHHcCChHH-HHHHHHHHHhhCCCCcchHHHHHHHHHH
Confidence 11122233444444 444445 578887654333333221111110 11111 2245555555555544455667
Q ss_pred cCcchHHHHHHhhhcCeeEEE-------eCCCccccccCcccc
Q 037713 570 CGDCHIVMKMISRITKREIVV-------RDATRYHHFKDGKCS 605 (610)
Q Consensus 570 ~~~~~~~~~~~s~~~~~~~~~-------~d~~~~h~~~~g~cs 605 (610)
.|+..++.+....|..+.+.- --.+..|-|.-|--|
T Consensus 704 ~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~ 746 (857)
T PLN03077 704 AGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDES 746 (857)
T ss_pred CCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCC
Confidence 899999999998887773221 113567788665443
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-64 Score=553.16 Aligned_cols=505 Identities=16% Similarity=0.167 Sum_probs=458.8
Q ss_pred hhhHHHhhhhhhccCChHHHHHHHHHHHHhCC-CCCCchHHHHHHHhhcCCChHHHHHHHccCCCCCcchHHHHHHHHHc
Q 037713 3 ISHYLHRLRVCARHQIALTVKTLHAQIIKLGL-HQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81 (610)
Q Consensus 3 ~~~y~~ll~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~ 81 (610)
+..|..++..|.+.|+++.|.++++.|.+.|+ .++..+++.++..|.+.|.+++|.++|+.|+.||..+||.+|.+|++
T Consensus 370 ~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k 449 (1060)
T PLN03218 370 SPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCAS 449 (1060)
T ss_pred chHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 45788889999999999999999999999996 56777888999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHH
Q 037713 82 ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161 (610)
Q Consensus 82 ~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 161 (610)
.|++++|.++|++|.+.| +.||..+|+++|.+|++.|+++.|.++|++|.+.|+.||..+|++||++|++.|++++|.+
T Consensus 450 ~g~~e~A~~lf~~M~~~G-l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~ 528 (1060)
T PLN03218 450 SQDIDGALRVLRLVQEAG-LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFG 528 (1060)
T ss_pred CcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence 999999999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcC----CCChhhHHHHHHHHHhcCCHHHHHHHHhhCC------CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 037713 162 VFDSIK----LKNSVSWTAMLSAYARSGRKKDAMEIFEQAP------VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRRE 231 (610)
Q Consensus 162 ~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 231 (610)
+|++|. .||..+|+++|.+|++.|++++|.++|++|. .||.++|++||.+|++.|++++|.++|++|.+.
T Consensus 529 lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~ 608 (1060)
T PLN03218 529 AYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY 608 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 999996 5799999999999999999999999999995 468999999999999999999999999999999
Q ss_pred CCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhHH
Q 037713 232 GVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR----KDVVSW 307 (610)
Q Consensus 232 ~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~ 307 (610)
|+. |+..+|+.++.+|++.|++++|..++++|.+.|+.||..+|++|+++|++.|++++|.++|++|.+ ||..+|
T Consensus 609 gi~-p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ty 687 (1060)
T PLN03218 609 NIK-GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSY 687 (1060)
T ss_pred CCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 998 999999999999999999999999999999999999999999999999999999999999999974 799999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHh
Q 037713 308 TSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSR 387 (610)
Q Consensus 308 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 387 (610)
+++|.+|++.|++++|.++|++|.+.|+.||..||+.||.+|++.|++++|.++|++|.+. |+.||..+|++++.+|++
T Consensus 688 nsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~-Gi~Pd~~Ty~sLL~a~~k 766 (1060)
T PLN03218 688 SSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL-GLCPNTITYSILLVASER 766 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999885 999999999999999999
Q ss_pred cCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHh-----------------------cCchhHHHHHHHHHhcCC-CCC
Q 037713 388 SGHLDEAENLIKAM---PFEPDEPTWAALLSACKH-----------------------HRNTEMGTRVANHLLSLK-PED 440 (610)
Q Consensus 388 ~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~-----------------------~g~~~~a~~~~~~~~~~~-p~~ 440 (610)
.|++++|.+++++| ++.||..+|++|+..|.+ .+..++|..+|++|.+.+ .+|
T Consensus 767 ~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd 846 (1060)
T PLN03218 767 KDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPT 846 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCC
Confidence 99999999999999 899999999999976542 123467999999999655 335
Q ss_pred CcchHhHHHHhhhhcchhHHHHHHHHHhhCCCccCCcccEEEECCEEEEEEeccCCCCChHHHHHHHHHHHHHHHHCCcc
Q 037713 441 PSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYV 520 (610)
Q Consensus 441 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~ 520 (610)
..+|..++..+...+.++.+.++++.|...+..+........+ .|...+ ...+-.++++|.+.|+.
T Consensus 847 ~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li--------~g~~~~------~~~A~~l~~em~~~Gi~ 912 (1060)
T PLN03218 847 MEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLV--------DGFGEY------DPRAFSLLEEAASLGVV 912 (1060)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHH--------HhhccC------hHHHHHHHHHHHHcCCC
Confidence 6889988888888899999988888886555443221111111 111111 12345788999999999
Q ss_pred cCCc
Q 037713 521 PDTS 524 (610)
Q Consensus 521 p~~~ 524 (610)
|+..
T Consensus 913 p~~~ 916 (1060)
T PLN03218 913 PSVS 916 (1060)
T ss_pred CCcc
Confidence 9986
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-63 Score=544.92 Aligned_cols=464 Identities=16% Similarity=0.208 Sum_probs=431.9
Q ss_pred hHHHhhhhhhccCChHHHHHHHHHHHHhCCCCCCchHHHHHHHhhcCCChHHHHHHHccCC----CCCcchHHHHHHHHH
Q 037713 5 HYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP----QRDHVSWASILTAYN 80 (610)
Q Consensus 5 ~y~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~ 80 (610)
.+..++.+|.+.+.++.|..++..|.. ||..+||.|+.+|++.|+++.|.++|+.|. .||..+||+||.+|+
T Consensus 408 ~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~ 483 (1060)
T PLN03218 408 YHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCA 483 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 355678889999999999999988763 899999999999999999999999999997 579999999999999
Q ss_pred cCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHH
Q 037713 81 QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNAR 160 (610)
Q Consensus 81 ~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 160 (610)
+.|+.++|.++|++|.+.| +.||..||+.+|.+|++.|++++|.++|+.|.+.|+.||..+||.|+.+|++.|++++|.
T Consensus 484 k~G~vd~A~~vf~eM~~~G-v~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~ 562 (1060)
T PLN03218 484 KSGKVDAMFEVFHEMVNAG-VEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAF 562 (1060)
T ss_pred hCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcC------CCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCC----ChhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 037713 161 AVFDSIK------LKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR----NLFLWTALVSGLVQSRNEIDAFYSFIEMRR 230 (610)
Q Consensus 161 ~~~~~m~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 230 (610)
++|++|. .||.++|+++|.+|++.|++++|.++|++|.+. +..+||++|.+|++.|++++|+++|++|.+
T Consensus 563 ~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~ 642 (1060)
T PLN03218 563 DVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK 642 (1060)
T ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 9999995 479999999999999999999999999999754 669999999999999999999999999999
Q ss_pred cCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCChhH
Q 037713 231 EGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR----RKDVVS 306 (610)
Q Consensus 231 ~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~ 306 (610)
.|+. ||..||+.++.+|++.|+++.|.++++.|.+.|+.|+..+|++||.+|+++|++++|.++|++|. .||..+
T Consensus 643 ~Gv~-PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdvvt 721 (1060)
T PLN03218 643 KGVK-PDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVST 721 (1060)
T ss_pred cCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 9999 99999999999999999999999999999999999999999999999999999999999999995 589999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHH
Q 037713 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLS 386 (610)
Q Consensus 307 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 386 (610)
||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+. |+.||..+|++|+.++.
T Consensus 722 yN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~ 800 (1060)
T PLN03218 722 MNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCL 800 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999885 99999999999998743
Q ss_pred ----hcC-------------------CHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHh-cCCCC
Q 037713 387 ----RSG-------------------HLDEAENLIKAM---PFEPDEPTWAALLSACKHHRNTEMGTRVANHLL-SLKPE 439 (610)
Q Consensus 387 ----~~g-------------------~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~p~ 439 (610)
+++ ..++|..+|++| ++.||..||+.++.++...+..+.+..+++.+. .-.++
T Consensus 801 ~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~ 880 (1060)
T PLN03218 801 RRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQ 880 (1060)
T ss_pred HHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCc
Confidence 222 246799999999 899999999999988888888999988888765 33455
Q ss_pred CCcchHhHHHHhhhhcchhHHHHHHHHHhhCCCccCCc
Q 037713 440 DPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPG 477 (610)
Q Consensus 440 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 477 (610)
+..+|..|++.+.+. .++|..+++.|.+.|+.|+..
T Consensus 881 ~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 881 KQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred chhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 678999999988432 368999999999999997654
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-58 Score=498.72 Aligned_cols=487 Identities=24% Similarity=0.377 Sum_probs=409.1
Q ss_pred CCCcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHH
Q 037713 66 QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSS 145 (610)
Q Consensus 66 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 145 (610)
.++..+|+.+|.+|.+.|++++|+++|+.|...++..||..+|+.++.+|++.++++.|.++|..|.+.|+.||..++|.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 34778999999999999999999999999998665789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHH
Q 037713 146 LVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSF 225 (610)
Q Consensus 146 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 225 (610)
|+++|+++|++++|.++| ++|+.||+++||++|.+|++.|++++|+++|
T Consensus 164 Li~~y~k~g~~~~A~~lf-------------------------------~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf 212 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLF-------------------------------DEMPERNLASWGTIIGGLVDAGNYREAFALF 212 (697)
T ss_pred HHHHHhcCCCHHHHHHHH-------------------------------hcCCCCCeeeHHHHHHHHHHCcCHHHHHHHH
Confidence 999998888776555555 5555567777778888888888888888888
Q ss_pred HHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh
Q 037713 226 IEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305 (610)
Q Consensus 226 ~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~ 305 (610)
++|.+.|+. ||..||..++.+|++.|..+.+.++|..+.+.|+.+|..++|+|+++|+++|++++|.++|++|.++|++
T Consensus 213 ~~M~~~g~~-p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~v 291 (697)
T PLN03081 213 REMWEDGSD-AEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTV 291 (697)
T ss_pred HHHHHhCCC-CChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChh
Confidence 999999998 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHH
Q 037713 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLL 385 (610)
Q Consensus 306 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 385 (610)
+||+||.+|++.|+.++|+++|++|.+.|+.||..||++++.+|++.|.+++|.+++..|.+. |+.||..+|++|+++|
T Consensus 292 t~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y 370 (697)
T PLN03081 292 AWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLY 370 (697)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999986 9999999999999999
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCC-CCCCcchHhHHHHhhhhcchhHHHHHH
Q 037713 386 SRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLK-PEDPSSYILLSNVYASAAMWQHVSKVR 464 (610)
Q Consensus 386 ~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~ 464 (610)
+++|++++|.++|++|. +||..+|++|+.+|+++|+.++|.++|++|.+.+ .+|..+|..++.+|.+.|+.++|.+++
T Consensus 371 ~k~G~~~~A~~vf~~m~-~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f 449 (697)
T PLN03081 371 SKWGRMEDARNVFDRMP-RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIF 449 (697)
T ss_pred HHCCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 99999999999999996 5899999999999999999999999999998644 235689999999999999999999999
Q ss_pred HHHhh-CCCccCCcccEEEECCEEEEEEeccCCCCChHHHHHHHHHHHHHHHHCCcccCCccccccCChhhhhhhh---h
Q 037713 465 KLMSV-MEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQL---F 540 (610)
Q Consensus 465 ~~m~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~---~ 540 (610)
+.|.+ .|+.|+...-. .++.+....+..+++++ + +++.+..|+..++...+..+.+.+.+ .
T Consensus 450 ~~m~~~~g~~p~~~~y~--------~li~~l~r~G~~~eA~~----~---~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~ 514 (697)
T PLN03081 450 QSMSENHRIKPRAMHYA--------CMIELLGREGLLDEAYA----M---IRRAPFKPTVNMWAALLTACRIHKNLELGR 514 (697)
T ss_pred HHHHHhcCCCCCccchH--------hHHHHHHhcCCHHHHHH----H---HHHCCCCCCHHHHHHHHHHHHHcCCcHHHH
Confidence 99976 57765542110 11222334455555543 3 34567888887644333332222211 1
Q ss_pred hhhHHHHHHHhhccCCCCCcEEEEccccccCcchHHHHHHhhhcCeeEEE-------eCCCccccccCccc
Q 037713 541 WHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVV-------RDATRYHHFKDGKC 604 (610)
Q Consensus 541 ~~~~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~~-------~d~~~~h~~~~g~c 604 (610)
...++ .+++.+...+..+.+++-+..+|+..+|.++...|..+.+.. --.+..|.|-.|-.
T Consensus 515 ~~~~~---l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~ 582 (697)
T PLN03081 515 LAAEK---LYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDR 582 (697)
T ss_pred HHHHH---HhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCC
Confidence 12222 245554444556667777889999999999999999886532 12345677765543
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.4e-28 Score=275.74 Aligned_cols=454 Identities=13% Similarity=0.044 Sum_probs=281.5
Q ss_pred HHHhhhhhhccCChHHHHHHHHHHHHhCCCCCCchHHHHHHHhhcCCChHHHHHHHccCCC---CCcchHHHHHHHHHcC
Q 037713 6 YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ---RDHVSWASILTAYNQA 82 (610)
Q Consensus 6 y~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~ 82 (610)
+..+...+...++.+.|...+..+.+.... .......++..|.+.|++++|.++++.+.. ++..+|+.+...+...
T Consensus 400 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 478 (899)
T TIGR02917 400 RTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGK 478 (899)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhC
Confidence 334444555667777777777766655422 233455566667777777777777766542 2455667777777777
Q ss_pred CCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHH
Q 037713 83 NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAV 162 (610)
Q Consensus 83 g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 162 (610)
|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++.+++.+ +.+..++..+...|.+.|+.++|...
T Consensus 479 ~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 555 (899)
T TIGR02917 479 GDLAKAREAFEKALSIE--PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAW 555 (899)
T ss_pred CCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777777766532 2234445555666666677777777777766654 44566666667777777777777777
Q ss_pred HHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 037713 163 FDSIKL---KNSVSWTAMLSAYARSGRKKDAMEIFEQAPV---RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIV 236 (610)
Q Consensus 163 ~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p 236 (610)
|+++.. .+...+..++..|.+.|++++|..+++++.. .+...|..+...|...|++++|+..|+++.+.. |.
T Consensus 556 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~ 633 (899)
T TIGR02917 556 LEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ--PD 633 (899)
T ss_pred HHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC
Confidence 766642 2445566666667777777777777666542 245566666667777777777777777666544 24
Q ss_pred CHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHH
Q 037713 237 DPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVG 313 (610)
Q Consensus 237 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 313 (610)
+...+..+..++...|++++|..+++.+.+.. +.+...+..++..+.+.|++++|.++++.+.+ .+...+..+...
T Consensus 634 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 712 (899)
T TIGR02917 634 SALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDL 712 (899)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHH
Confidence 55556666666666677777777766666543 33455666666666666666666666666653 244556666666
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 037713 314 TAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDE 393 (610)
Q Consensus 314 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 393 (610)
+...|++++|.+.|+++...+ |+..++..+..++.+.|++++|.+.++.+.+. .+.+...+..+...|.+.|++++
T Consensus 713 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~ 788 (899)
T TIGR02917 713 YLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDK 788 (899)
T ss_pred HHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHH
Confidence 666666666666666666543 33355555666666666666666666666552 34455666666666666666666
Q ss_pred HHHHHHhC-CC-CCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhCC
Q 037713 394 AENLIKAM-PF-EPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVME 471 (610)
Q Consensus 394 A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 471 (610)
|.+.|+++ .. +++...++.+...+...|+ ++|+..++++++..|+++..+..++.+|...|++++|.+.++.+.+.+
T Consensus 789 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 789 AIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 66666665 22 2345556666666666666 556666666666666666666666666666666666666666665543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-27 Score=271.19 Aligned_cols=454 Identities=13% Similarity=0.016 Sum_probs=370.8
Q ss_pred hHHHhhhhhhccCChHHHHHHHHHHHHhCCCCCCchHHHHHHHhhcCCChHHHHHHHccCCCC---CcchHHHHHHHHHc
Q 037713 5 HYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQR---DHVSWASILTAYNQ 81 (610)
Q Consensus 5 ~y~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~ 81 (610)
.+..+...+...|+++.|.+++..+.+... .+...+..+...+...|++++|.+.|+.+... +...+..++..+.+
T Consensus 365 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 443 (899)
T TIGR02917 365 ALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLR 443 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHh
Confidence 445556667788899999999988877642 35566777888888899999999998876532 34556777888889
Q ss_pred CCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHH
Q 037713 82 ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161 (610)
Q Consensus 82 ~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 161 (610)
.|++++|+++++.+... .+++..++..+...+...|+.++|.+.+.++++.. +.+...+..+...+...|++++|.+
T Consensus 444 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 520 (899)
T TIGR02917 444 SGQFDKALAAAKKLEKK--QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQ 520 (899)
T ss_pred cCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999988774 35567788888888889999999999999888765 5566777888889999999999999
Q ss_pred HHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 037713 162 VFDSIKL---KNSVSWTAMLSAYARSGRKKDAMEIFEQAPV---RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDI 235 (610)
Q Consensus 162 ~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 235 (610)
.|+++.. .+..++..+...+.+.|+.++|...|+++.. .+...+..++..|...|++++|+.+++.+.+.. |
T Consensus 521 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~ 598 (899)
T TIGR02917 521 RFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA--P 598 (899)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--C
Confidence 9988863 3677888888899999999999999988743 355677888888999999999999999988765 2
Q ss_pred CCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHH
Q 037713 236 VDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIV 312 (610)
Q Consensus 236 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 312 (610)
.+..++..+..++...|+++.|...++.+.+.. +.+...+..+...|.+.|++++|..+|+++.+ .+..+|..++.
T Consensus 599 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 677 (899)
T TIGR02917 599 DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQ 677 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 677888888999999999999999999888764 44667788888999999999999999988764 35778888999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 037713 313 GTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLD 392 (610)
Q Consensus 313 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 392 (610)
.+...|++++|.++++.+.+.+ +++...+..+...+...|++++|...|+.+.+. .|+..++..+..++.+.|+++
T Consensus 678 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~ 753 (899)
T TIGR02917 678 LLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---APSSQNAIKLHRALLASGNTA 753 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHCCCHH
Confidence 9999999999999999988774 446677888888888999999999999988763 455577888888999999999
Q ss_pred HHHHHHHhC--CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhC
Q 037713 393 EAENLIKAM--PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 393 ~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 470 (610)
+|.+.++++ ..+.+...+..+...|...|+.++|...|+++++..|+++..+..++.++...|+ .+|...++...+.
T Consensus 754 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 754 EAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 999888887 3334577788888888889999999999999999999888889999999999998 7888888887654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-31 Score=216.02 Aligned_cols=106 Identities=60% Similarity=1.054 Sum_probs=96.9
Q ss_pred cccEEEECCEEEEEEeccCCCCChHHHHHHHHHHHHHHHHCCcccCCccccccCChhhh--------hhhhhhhhHHHHH
Q 037713 477 GYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEK--------ERQLFWHSERLAV 548 (610)
Q Consensus 477 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~--------~~~~~~~~~~la~ 548 (610)
||||+++ |.|++|+.+||+. ++..++...||.|++..+.++++++++ +..++.||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 6899866 9999999999998 456677889999999999998877665 5688999999999
Q ss_pred HHhhccCCCCCcEEEEccc-cccCcchHHHHHHhhhcCeeEEEeCCCcccccc
Q 037713 549 AYGLLKSVPGTVLRVVKNL-RVCGDCHIVMKMISRITKREIVVRDATRYHHFK 600 (610)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~s~~~~~~~~~~d~~~~h~~~ 600 (610)
||||+++ +|+||+ |||+|||+|+|+||++++|+|+|||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999998 899999 999999999999999999999999999999996
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.2e-20 Score=209.94 Aligned_cols=411 Identities=12% Similarity=0.001 Sum_probs=329.4
Q ss_pred HHHHHhhcCCChHHHHHHHccCCC--C-CcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChh---hHH-------
Q 037713 43 TLIDAYGKCDLVQYAHHLLEEMPQ--R-DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHF---VFA------- 109 (610)
Q Consensus 43 ~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~---~~~------- 109 (610)
.+...+...|++++|...|++..+ | +...+..+...+.+.|++++|+..|++..+.. |+.. .+.
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~---p~~~~~~~~~~ll~~~~ 350 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALD---PHSSNRDKWESLLKVNR 350 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCccchhHHHHHHHhhh
Confidence 345667788999999999998753 3 67789999999999999999999999998843 4321 111
Q ss_pred -----HHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCC--C-ChhhHHHHHHHH
Q 037713 110 -----SLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKL--K-NSVSWTAMLSAY 181 (610)
Q Consensus 110 -----~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~ 181 (610)
.....+.+.|++++|...++++++.. +.+...+..+..+|...|++++|++.|++... | +...+..+...|
T Consensus 351 ~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 351 YWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLY 429 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 12345678899999999999999875 56677888899999999999999999999873 2 456677777777
Q ss_pred HhcCCHHHHHHHHhhCCCCC------------hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHh
Q 037713 182 ARSGRKKDAMEIFEQAPVRN------------LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249 (610)
Q Consensus 182 ~~~g~~~~A~~~~~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~ 249 (610)
. .++.++|...++.++... ...+..+...+...|++++|++.|++..+... .+...+..+...+.
T Consensus 430 ~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P--~~~~~~~~LA~~~~ 506 (1157)
T PRK11447 430 R-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP--GSVWLTYRLAQDLR 506 (1157)
T ss_pred H-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHH
Confidence 4 567899999998876432 22355667788899999999999999998762 46777888899999
Q ss_pred ccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC----Ch---------hHHHHHHHHHHh
Q 037713 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK----DV---------VSWTSIIVGTAQ 316 (610)
Q Consensus 250 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~----~~---------~~~~~li~~~~~ 316 (610)
+.|++++|...++.+.+.. +.+...+..+...+.+.|+.++|...++.+... +. ..+..+...+..
T Consensus 507 ~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~ 585 (1157)
T PRK11447 507 QAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRD 585 (1157)
T ss_pred HcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHH
Confidence 9999999999999998754 335555556666778899999999999998642 11 112345667889
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037713 317 HGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAEN 396 (610)
Q Consensus 317 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 396 (610)
.|+.++|+++++. .+++...+..+...+.+.|++++|+..|+.+.+. -+.+...+..++..|...|++++|++
T Consensus 586 ~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~ 658 (1157)
T PRK11447 586 SGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARA 658 (1157)
T ss_pred CCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999882 2445667778889999999999999999999873 34567899999999999999999999
Q ss_pred HHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCc------chHhHHHHhhhhcchhHHHHHHHHHh
Q 037713 397 LIKAM-PFEPD-EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS------SYILLSNVYASAAMWQHVSKVRKLMS 468 (610)
Q Consensus 397 ~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~a~~~~~~m~ 468 (610)
.++.. ...|+ ..++..+..++...|++++|.++++++++..|+++. .+..++.++...|++++|...++...
T Consensus 659 ~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 659 QLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred HHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99987 44554 556677788889999999999999999988765543 55567899999999999999988874
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.3e-20 Score=209.89 Aligned_cols=454 Identities=11% Similarity=0.053 Sum_probs=304.1
Q ss_pred HHHhhhhhhccCChHHHHHHHHHHHHhCCCCCCchHHHHHHHhhcCCChHHHHHHHccCCC--CCc-chH----------
Q 037713 6 YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ--RDH-VSW---------- 72 (610)
Q Consensus 6 y~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~-~~~---------- 72 (610)
+..-.+.+...++.+.|++.+..++... +.++.++..++..+.+.|+.++|.+.+++..+ |+. ..+
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~ 109 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLST 109 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcC
Confidence 3344455667778888888888777654 23567777788888888888888888887753 322 111
Q ss_pred ------HHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhh-HHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHH
Q 037713 73 ------ASILTAYNQANLPQKTISIFSTMLALDKLQPDHFV-FASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSS 145 (610)
Q Consensus 73 ------~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 145 (610)
..+...+.+.|++++|++.|+.+.+.. +|+... ...........++.++|...++.+++.. +.+...+..
T Consensus 110 ~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~--p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~ 186 (1157)
T PRK11447 110 PEGRQALQQARLLATTGRTEEALASYDKLFNGA--PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNT 186 (1157)
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC--CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 222345777888888888888887643 333221 1111122234578888888888888765 556677778
Q ss_pred HHHHHHhCCChHHHHHHHHhcCCCCh------hh-----------------HH---------------------------
Q 037713 146 LVDMYAKCGLPNNARAVFDSIKLKNS------VS-----------------WT--------------------------- 175 (610)
Q Consensus 146 li~~~~~~g~~~~A~~~~~~m~~~~~------~~-----------------~~--------------------------- 175 (610)
+...+...|+.++|...|+++..... .. +.
T Consensus 187 LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~ 266 (1157)
T PRK11447 187 LALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLA 266 (1157)
T ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhcc
Confidence 88888888888888888877632100 00 00
Q ss_pred -------HHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHH----
Q 037713 176 -------AMLSAYARSGRKKDAMEIFEQAPV---RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVL---- 241 (610)
Q Consensus 176 -------~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~---- 241 (610)
.....+...|++++|+..|++... .+...+..+...|.+.|++++|+..|++..+.....++...+
T Consensus 267 dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll 346 (1157)
T PRK11447 267 DPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLL 346 (1157)
T ss_pred CcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHH
Confidence 112335667888888888887653 256778888888888888888888888887765321221111
Q ss_pred --------HHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHH-
Q 037713 242 --------SSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR--K-DVVSWTS- 309 (610)
Q Consensus 242 --------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~- 309 (610)
......+.+.|++++|...++++.+.. +.+...+..+...|...|++++|++.|++..+ | +...+..
T Consensus 347 ~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L 425 (1157)
T PRK11447 347 KVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGL 425 (1157)
T ss_pred HhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 122345667788888888888888764 34556677788888888888888888887763 2 2222222
Q ss_pred -----------------------------------------HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037713 310 -----------------------------------------IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYA 348 (610)
Q Consensus 310 -----------------------------------------li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 348 (610)
+...+...|++++|++.|++..+.... +...+..+...
T Consensus 426 ~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~ 504 (1157)
T PRK11447 426 ANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQD 504 (1157)
T ss_pred HHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 233455678889999999988875322 45566778888
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHH--------------------------------------------HHH
Q 037713 349 CSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL--------------------------------------------LDL 384 (610)
Q Consensus 349 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l--------------------------------------------i~~ 384 (610)
+.+.|++++|...++.+.+.. +.+...+..+ .+.
T Consensus 505 ~~~~G~~~~A~~~l~~al~~~--P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~ 582 (1157)
T PRK11447 505 LRQAGQRSQADALMRRLAQQK--PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANR 582 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHH
Confidence 999999999999998887632 2222222222 233
Q ss_pred HHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHH
Q 037713 385 LSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVR 464 (610)
Q Consensus 385 ~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 464 (610)
+...|+.++|.++++.-+ ++...+..+...+...|++++|+..++++++.+|+++.++..++.+|...|++++|.+.+
T Consensus 583 l~~~G~~~eA~~~l~~~p--~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 583 LRDSGKEAEAEALLRQQP--PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred HHHCCCHHHHHHHHHhCC--CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 445555555555555322 234455667777888888888888888888888888888888888888888888888888
Q ss_pred HHHhh
Q 037713 465 KLMSV 469 (610)
Q Consensus 465 ~~m~~ 469 (610)
+...+
T Consensus 661 ~~ll~ 665 (1157)
T PRK11447 661 AKLPA 665 (1157)
T ss_pred HHHhc
Confidence 87654
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7e-21 Score=185.99 Aligned_cols=380 Identities=14% Similarity=0.167 Sum_probs=328.4
Q ss_pred cchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCC-ChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChh-HHHHH
Q 037713 69 HVSWASILTAYNQANLPQKTISIFSTMLALDKLQP-DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV-VKSSL 146 (610)
Q Consensus 69 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-d~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~l 146 (610)
..+|..+...+-..|++++|+.+++.|.+ .+| ....|..+..++...|+.+.|.+.|.+.++. .|+.+ ..+-+
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aie---l~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~l 190 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIE---LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDL 190 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHh---cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcch
Confidence 45788999999999999999999999998 556 5677888999999999999999999999875 45544 34455
Q ss_pred HHHHHhCCChHHHHHHHHhcCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCh---hhHHHHHHHHHhCCChHH
Q 037713 147 VDMYAKCGLPNNARAVFDSIKL--K-NSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL---FLWTALVSGLVQSRNEID 220 (610)
Q Consensus 147 i~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~ 220 (610)
.+..-..|++++|...+.+..+ | =.+.|+.|...+-.+|+.-.|+.-|++...-|+ ..|-.|...|...+.+++
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchH
Confidence 6666678999999999887763 3 357899999999999999999999999876544 688899999999999999
Q ss_pred HHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 037713 221 AFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR 300 (610)
Q Consensus 221 A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 300 (610)
|+..|.+..... |.....+..+...|...|.++.|...+++.++.. +.-...|+.|..++-..|++.+|.+.+++..
T Consensus 271 Avs~Y~rAl~lr--pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 271 AVSCYLRALNLR--PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred HHHHHHHHHhcC--CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 999999988765 3567788888888999999999999999998864 3346789999999999999999999999987
Q ss_pred C--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCH-
Q 037713 301 R--K-DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN-EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSL- 375 (610)
Q Consensus 301 ~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~- 375 (610)
. | -..+.+.|...|...|.+++|..+|....+- .|. ...++.|...|-+.|++++|...+++.. .+.|+.
T Consensus 348 ~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fA 422 (966)
T KOG4626|consen 348 RLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFA 422 (966)
T ss_pred HhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHH
Confidence 4 3 4678899999999999999999999998874 555 4678899999999999999999999886 478875
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhh
Q 037713 376 QHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD-EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYAS 453 (610)
Q Consensus 376 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 453 (610)
..|+.+...|-..|+.+.|.+.+.+. .+.|. ...++.|...|...|++.+|++.++.+++++|+.+.+|..++..+.-
T Consensus 423 da~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~ 502 (966)
T KOG4626|consen 423 DALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQI 502 (966)
T ss_pred HHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHH
Confidence 88999999999999999999999888 77776 66788999999999999999999999999999999999999888877
Q ss_pred hcchhHHH
Q 037713 454 AAMWQHVS 461 (610)
Q Consensus 454 ~g~~~~a~ 461 (610)
-.+|.+-.
T Consensus 503 vcdw~D~d 510 (966)
T KOG4626|consen 503 VCDWTDYD 510 (966)
T ss_pred HhcccchH
Confidence 77777633
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-18 Score=187.10 Aligned_cols=390 Identities=12% Similarity=0.032 Sum_probs=289.7
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHH
Q 037713 72 WASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYA 151 (610)
Q Consensus 72 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 151 (610)
+......+.+.|++++|+..|++..+ ..|+...|..+..++.+.|+++.|...+...++.. +.+...+..+..+|.
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~---~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE---CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 44566677888999999999998887 56788888888888888899999999999888865 556678888888999
Q ss_pred hCCChHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCC----------------------------
Q 037713 152 KCGLPNNARAVFDSIKLK---NSVSWTAMLSAYARSGRKKDAMEIFEQAPVR---------------------------- 200 (610)
Q Consensus 152 ~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------------------------- 200 (610)
..|++++|...|...... +......++..+........+...++.-+..
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 999999998777554321 1111111111111111112222222221110
Q ss_pred -Ch---hhHHHHHHH---HHhCCChHHHHHHHHHHHHcC-CCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCc
Q 037713 201 -NL---FLWTALVSG---LVQSRNEIDAFYSFIEMRREG-VDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESC 272 (610)
Q Consensus 201 -~~---~~~~~li~~---~~~~g~~~~A~~~~~~m~~~~-~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 272 (610)
+. ..+..+... ....+++++|++.|++..+.+ ..|.+...+..+...+...|+++.|...++.+++.. +.+
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~ 364 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRV 364 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCc
Confidence 00 011111111 122368999999999998865 232455677788888889999999999999998864 334
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037713 273 LFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYAC 349 (610)
Q Consensus 273 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 349 (610)
...+..+...|...|++++|...|++..+ .+...|..+...+...|++++|+..|++..+... .+...+..+..++
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~~ 443 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHHH
Confidence 66788899999999999999999998764 3678899999999999999999999999988632 2567777888999
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-H-------HHHHHHHHHHhc
Q 037713 350 SHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPDE-P-------TWAALLSACKHH 420 (610)
Q Consensus 350 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~-------~~~~ll~~~~~~ 420 (610)
.+.|++++|...|+...+. .+.+...|+.+..+|...|++++|.+.|++. .+.|+. . .++..+..+...
T Consensus 444 ~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~ 521 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWK 521 (615)
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHh
Confidence 9999999999999999873 4455788999999999999999999999986 444431 1 122222234457
Q ss_pred CchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhh
Q 037713 421 RNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 421 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 469 (610)
|++++|.++++++++++|++...+..++.+|.+.|++++|.+.++...+
T Consensus 522 ~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 522 QDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999999999999999999988899999999999999999999988754
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.5e-17 Score=181.29 Aligned_cols=444 Identities=13% Similarity=0.048 Sum_probs=293.4
Q ss_pred ccCChHHHHHHHHHHHHhCCCCCCchHHHHHHHhhcCCChHHHHHHHccCCCCCc--chHHHHHHHHHcCCCchHHHHHH
Q 037713 15 RHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH--VSWASILTAYNQANLPQKTISIF 92 (610)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~--~~~~~li~~~~~~g~~~~A~~~~ 92 (610)
..|+++.|...+..+++.... ++.++..|...|.+.|+.++|+..+++..+.++ .-|..++..+ +++++|..++
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~y 131 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTV 131 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHH
Confidence 348899999999998887644 477888899999999999999999888764322 2222222222 6777777777
Q ss_pred HHhHHCCCC-------------------------------------CCChhhHHHH-HHHHhccCCcHHHHHHHHHHHhc
Q 037713 93 STMLALDKL-------------------------------------QPDHFVFASL-VKACGSLGATRLGKQVHACFVLS 134 (610)
Q Consensus 93 ~~m~~~~~~-------------------------------------~pd~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~ 134 (610)
+++.+..+- .|+..+.... .+.+...++++.+...+..+.+.
T Consensus 132 e~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~ 211 (987)
T PRK09782 132 EELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQ 211 (987)
T ss_pred HHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhc
Confidence 777663311 1112222222 45555667777777777777777
Q ss_pred CCCCChhHHHHHHHHHHh-CCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCC-----ChhhHHH-
Q 037713 135 PFCDDDVVKSSLVDMYAK-CGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR-----NLFLWTA- 207 (610)
Q Consensus 135 g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~- 207 (610)
+ +.+..-...|..+|.. .++ +++..++......|...+..+...|.+.|+.++|.+++.+++.- +..+|--
T Consensus 212 ~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~ 289 (987)
T PRK09782 212 N-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYL 289 (987)
T ss_pred C-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHH
Confidence 6 4445555666667776 355 77777766544557888889999999999999999999876521 0000000
Q ss_pred --------------------------H---HHH-----------------------------------------------
Q 037713 208 --------------------------L---VSG----------------------------------------------- 211 (610)
Q Consensus 208 --------------------------l---i~~----------------------------------------------- 211 (610)
+ +..
T Consensus 290 l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y 369 (987)
T PRK09782 290 LSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLY 369 (987)
T ss_pred HHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHH
Confidence 0 000
Q ss_pred ----------------HHhCCChHHHHHHHHHHHHc-CCCCCCHhHHHHHHHHHhcc-----------------------
Q 037713 212 ----------------LVQSRNEIDAFYSFIEMRRE-GVDIVDPLVLSSIVGACANF----------------------- 251 (610)
Q Consensus 212 ----------------~~~~g~~~~A~~~~~~m~~~-~~~~p~~~t~~~ll~~~~~~----------------------- 251 (610)
.++.|+.++|.++|+..... +-..++.....-++..+...
T Consensus 370 ~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 449 (987)
T PRK09782 370 QQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQ 449 (987)
T ss_pred hcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHH
Confidence 33456666666666655441 10001111221222222222
Q ss_pred ----------------------------------------ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 037713 252 ----------------------------------------AVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIA 291 (610)
Q Consensus 252 ----------------------------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 291 (610)
+..++|...+....... |+......+...+...|++++
T Consensus 450 ~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~ee 527 (987)
T PRK09782 450 WQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYAT 527 (987)
T ss_pred HHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHH
Confidence 23334444444444332 333222233444457888888
Q ss_pred HHHHHHhcCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 037713 292 AKDIFGRMRR--KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369 (610)
Q Consensus 292 A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 369 (610)
|...|+++.. ++...+..+...+.+.|+.++|...|++..+.. +++...+..+.......|++++|...+++..+
T Consensus 528 Ai~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~-- 604 (987)
T PRK09782 528 ALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLN-- 604 (987)
T ss_pred HHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--
Confidence 8888877653 344556667777788888888888888887753 22233333344455566999999999988875
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhH
Q 037713 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD-EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILL 447 (610)
Q Consensus 370 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 447 (610)
..|+...|..+..++.+.|++++|...+++. ...|+ ...++.+..++...|+.++|+..++++++.+|+++..+..+
T Consensus 605 -l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nL 683 (987)
T PRK09782 605 -IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQL 683 (987)
T ss_pred -hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 4567888899999999999999999999888 55665 55666777789999999999999999999999999999999
Q ss_pred HHHhhhhcchhHHHHHHHHHhhC
Q 037713 448 SNVYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 448 ~~~~~~~g~~~~a~~~~~~m~~~ 470 (610)
+.+|...|++++|...++...+.
T Consensus 684 A~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 684 AYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999999999999998888643
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.9e-19 Score=173.91 Aligned_cols=417 Identities=11% Similarity=0.062 Sum_probs=338.1
Q ss_pred HHHHHHhhcCCChHHHHHHHccCCCCC---cchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhcc
Q 037713 42 NTLIDAYGKCDLVQYAHHLLEEMPQRD---HVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSL 118 (610)
Q Consensus 42 ~~li~~~~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~ 118 (610)
..|..-.-+.|+++.|++--...-+.| ....-.+-..+.+..+.+....--....+. .+.-..+|+.+.+.+-..
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~--~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK--NPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhc--cchHHHHHHHHHHHHHHh
Confidence 344555556788888877654443321 222222334566666676655444333332 234667899999999999
Q ss_pred CCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCCh--hh-HHHHHHHHHhcCCHHHHHHHHh
Q 037713 119 GATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNS--VS-WTAMLSAYARSGRKKDAMEIFE 195 (610)
Q Consensus 119 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~-~~~li~~~~~~g~~~~A~~~~~ 195 (610)
|+++.|...+..+++.. +..+..|..+..++...|+.+.|...|.+..+-|+ .. .+.+-...-..|++++|...+-
T Consensus 130 g~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred chHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 99999999999999876 55688899999999999999999999988875443 32 2334455566899999999888
Q ss_pred hCCCCC---hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCc
Q 037713 196 QAPVRN---LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESC 272 (610)
Q Consensus 196 ~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 272 (610)
+..+.+ .+.|+.|...+-.+|+...|+.-|++...... .-...|..+...+...+.++.|...+..+.... +..
T Consensus 209 kAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP--~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~ 285 (966)
T KOG4626|consen 209 KAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDP--NFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNH 285 (966)
T ss_pred HHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCC--cchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccc
Confidence 765433 47899999999999999999999999988662 345678888888999999999999888877654 335
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 037713 273 LFISNAIVDMYAKCSDIIAAKDIFGRMRR--KD-VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN-EVTFVGLIYA 348 (610)
Q Consensus 273 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a 348 (610)
..++..|...|-..|.++.|+..+++..+ |+ ...|+.|..++-..|+..+|...|.+.... .|+ ....+.|...
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni 363 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNI 363 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHH
Confidence 67778888889999999999999999875 43 578999999999999999999999998875 444 6778899999
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhH
Q 037713 349 CSHVGLVGKGRKLFKSMIEDYGITPS-LQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD-EPTWAALLSACKHHRNTEM 425 (610)
Q Consensus 349 ~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~ 425 (610)
+...|.+++|..+|....+ +.|. ...++.|...|-..|++++|...+++. .++|+ ...++.+...|...|+.+.
T Consensus 364 ~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~ 440 (966)
T KOG4626|consen 364 YREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSA 440 (966)
T ss_pred HHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHH
Confidence 9999999999999998865 4555 477899999999999999999999988 88897 5678999999999999999
Q ss_pred HHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhh
Q 037713 426 GTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 426 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 469 (610)
|.+.+.+++..+|.-..++..|+.+|-.+|+..+|..-++...+
T Consensus 441 A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 441 AIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 99999999999999889999999999999999999999888764
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.4e-19 Score=181.14 Aligned_cols=280 Identities=16% Similarity=0.189 Sum_probs=129.1
Q ss_pred HHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCC---hhHHHHHHHHHHhCC
Q 037713 78 AYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD---DVVKSSLVDMYAKCG 154 (610)
Q Consensus 78 ~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g 154 (610)
.+...|++++|+..|.++.+.+ +.+..++..+...+...|+++.|..+++.+++.+..++ ..++..+...|.+.|
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 3445566666666666666532 12334555555666666666666666666655431111 133455555555555
Q ss_pred ChHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCh--------hhHHHHHHHHHhCCChHHHHH
Q 037713 155 LPNNARAVFDSIKL---KNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL--------FLWTALVSGLVQSRNEIDAFY 223 (610)
Q Consensus 155 ~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~li~~~~~~g~~~~A~~ 223 (610)
++++|..+|+++.+ .+..+++.++..+.+.|++++|.+.|+.+...+. ..|..+...+.+.|++++|..
T Consensus 122 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 122 LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 55555555555542 2333444444444444444444444444322110 112233334444444444444
Q ss_pred HHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--
Q 037713 224 SFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR-- 301 (610)
Q Consensus 224 ~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-- 301 (610)
.|+++.+.. +.+...+..+...|.+.|++++|.+.|+++.+
T Consensus 202 ~~~~al~~~-------------------------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 244 (389)
T PRK11788 202 LLKKALAAD-------------------------------------PQCVRASILLGDLALAQGDYAAAIEALERVEEQD 244 (389)
T ss_pred HHHHHHhHC-------------------------------------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 444444332 11223333444444444444444444444432
Q ss_pred CC--hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHH
Q 037713 302 KD--VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYT 379 (610)
Q Consensus 302 ~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 379 (610)
|+ ..+++.++.+|...|+.++|...++++.+. .|+...+..+...+.+.|++++|..+++.+.+. .|+...+.
T Consensus 245 p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~---~P~~~~~~ 319 (389)
T PRK11788 245 PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR---HPSLRGFH 319 (389)
T ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CcCHHHHH
Confidence 11 123444444455555555555555554443 233333344444455555555555555444332 34444444
Q ss_pred HHHHHHHh---cCCHHHHHHHHHhC
Q 037713 380 CLLDLLSR---SGHLDEAENLIKAM 401 (610)
Q Consensus 380 ~li~~~~~---~g~~~~A~~~~~~m 401 (610)
.++..+.. .|+.+++..++++|
T Consensus 320 ~l~~~~~~~~~~g~~~~a~~~~~~~ 344 (389)
T PRK11788 320 RLLDYHLAEAEEGRAKESLLLLRDL 344 (389)
T ss_pred HHHHHhhhccCCccchhHHHHHHHH
Confidence 44444332 23444444444444
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.5e-19 Score=181.09 Aligned_cols=300 Identities=13% Similarity=0.067 Sum_probs=178.5
Q ss_pred HHHHHhCCChHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCC-------hhhHHHHHHHHHhCC
Q 037713 147 VDMYAKCGLPNNARAVFDSIKLK---NSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN-------LFLWTALVSGLVQSR 216 (610)
Q Consensus 147 i~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g 216 (610)
...+...|++++|...|+++... +..+|..+...+...|++++|..+++.+.... ...+..+...|.+.|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 33455667777777777776532 33455556666666666666666665544321 123455555566666
Q ss_pred ChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 037713 217 NEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIF 296 (610)
Q Consensus 217 ~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~ 296 (610)
++++|+.+|+++.+.. |++..++..++..+...|++++|.+.+..+.+.+..+....
T Consensus 122 ~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--------------------- 178 (389)
T PRK11788 122 LLDRAEELFLQLVDEG--DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE--------------------- 178 (389)
T ss_pred CHHHHHHHHHHHHcCC--cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH---------------------
Confidence 6666666666655432 13344444444444444444444444444443321110000
Q ss_pred HhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHH
Q 037713 297 GRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQ 376 (610)
Q Consensus 297 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 376 (610)
....|..+...+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++++++.+. +-.....
T Consensus 179 ------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~ 250 (389)
T PRK11788 179 ------IAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSE 250 (389)
T ss_pred ------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHH
Confidence 01134455566666777777777777776542 223445666667777777777777777777653 1111235
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhh--
Q 037713 377 HYTCLLDLLSRSGHLDEAENLIKAM-PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYAS-- 453 (610)
Q Consensus 377 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 453 (610)
+++.++.+|.+.|++++|.+.++++ ...|+...+..+...+.+.|++++|..+++++++..|+++ .+..+...+..
T Consensus 251 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~ 329 (389)
T PRK11788 251 VLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEA 329 (389)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhcc
Confidence 5677777777777888877777776 4456666666777777788888888888888877777664 44444444432
Q ss_pred -hcchhHHHHHHHHHhhCCCccCCcc
Q 037713 454 -AAMWQHVSKVRKLMSVMEVKKEPGY 478 (610)
Q Consensus 454 -~g~~~~a~~~~~~m~~~~~~~~~~~ 478 (610)
.|+.+++..+++.|.+++++++|.+
T Consensus 330 ~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 330 EEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred CCccchhHHHHHHHHHHHHHhCCCCE
Confidence 4577788888888887777777753
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-16 Score=174.90 Aligned_cols=437 Identities=9% Similarity=0.020 Sum_probs=317.4
Q ss_pred CChHHHHHHHHHHHHhCCCCCCchHHHHHHH--------hhcCCChHHHHHHHccCCCCC--cchHHH-HHHHHHcCCCc
Q 037713 17 QIALTVKTLHAQIIKLGLHQYGPLPNTLIDA--------YGKCDLVQYAHHLLEEMPQRD--HVSWAS-ILTAYNQANLP 85 (610)
Q Consensus 17 ~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~--------~~~~g~~~~A~~~f~~m~~~~--~~~~~~-li~~~~~~g~~ 85 (610)
++...+..+++.+++.... +..++..+... |.+.+....|++ .+...|+ ...... +...|.+.|++
T Consensus 122 ~~~~kA~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw 198 (987)
T PRK09782 122 PVEVKSVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQW 198 (987)
T ss_pred ccChhHHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCH
Confidence 5666666777777666422 34455555554 666666666665 2222332 333333 37889999999
Q ss_pred hHHHHHHHHhHHCCCCCCChhhHHHHHHHHhc-cCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHH
Q 037713 86 QKTISIFSTMLALDKLQPDHFVFASLVKACGS-LGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFD 164 (610)
Q Consensus 86 ~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 164 (610)
++|++++.++.+.+ +.+..-...+-.++.. .++ +.+..++.. .+..|..+...+.+.|.+.|+.++|.++++
T Consensus 199 ~~Ai~lL~~L~k~~--pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~ 271 (987)
T PRK09782 199 SQADTLYNEARQQN--TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLI 271 (987)
T ss_pred HHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999965 2234445566667766 466 777666442 344688899999999999999999999999
Q ss_pred hcCC-----CChhhHHHHHHHH----------------------------------------------------------
Q 037713 165 SIKL-----KNSVSWTAMLSAY---------------------------------------------------------- 181 (610)
Q Consensus 165 ~m~~-----~~~~~~~~li~~~---------------------------------------------------------- 181 (610)
+++. ++..+|--++.-+
T Consensus 272 ~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 351 (987)
T PRK09782 272 ENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAV 351 (987)
T ss_pred hCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhh
Confidence 9872 2222222211111
Q ss_pred -----------------------------------HhcCCHHHHHHHHhhCCC-C-------------------------
Q 037713 182 -----------------------------------ARSGRKKDAMEIFEQAPV-R------------------------- 200 (610)
Q Consensus 182 -----------------------------------~~~g~~~~A~~~~~~~~~-~------------------------- 200 (610)
.+.|+.++|.++|.+... +
T Consensus 352 ~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 431 (987)
T PRK09782 352 SVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLAT 431 (987)
T ss_pred ccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccc
Confidence 456777777777654332 0
Q ss_pred --------------------------------------------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 037713 201 --------------------------------------------NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIV 236 (610)
Q Consensus 201 --------------------------------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p 236 (610)
+...|..+..++.. +++++|+..|.+..... |
T Consensus 432 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~---P 507 (987)
T PRK09782 432 PAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ---P 507 (987)
T ss_pred hHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC---C
Confidence 11223333334443 56667888777766554 5
Q ss_pred CHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHH---HHHHH
Q 037713 237 DPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWT---SIIVG 313 (610)
Q Consensus 237 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~---~li~~ 313 (610)
+......+..++...|+++.|...++.+... +|+...+..+...+.+.|+.++|...|++..+.++..++ .+...
T Consensus 508 d~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~ 585 (987)
T PRK09782 508 DAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQ 585 (987)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 5555445555567899999999999987654 444455667788899999999999999988764333333 33334
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 037713 314 TAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDE 393 (610)
Q Consensus 314 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 393 (610)
....|++++|+..|++..+. .|+...+..+..++.+.|++++|...++...+. -+.+...+..+...+...|++++
T Consensus 586 l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~ee 661 (987)
T PRK09782 586 RYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQ 661 (987)
T ss_pred HHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHH
Confidence 44569999999999999875 567888999999999999999999999999873 34456888899999999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhCC
Q 037713 394 AENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVME 471 (610)
Q Consensus 394 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 471 (610)
|.+.+++. ...| +...+..+..++...|++++|+..++++++++|++.......+.+..+..+++.|.+.++..-..+
T Consensus 662 Ai~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~ 741 (987)
T PRK09782 662 SREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFS 741 (987)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999988 5556 467888999999999999999999999999999999999999999999999999999887766544
Q ss_pred Cc
Q 037713 472 VK 473 (610)
Q Consensus 472 ~~ 473 (610)
..
T Consensus 742 ~~ 743 (987)
T PRK09782 742 FD 743 (987)
T ss_pred cc
Confidence 43
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-16 Score=176.33 Aligned_cols=398 Identities=11% Similarity=0.019 Sum_probs=270.1
Q ss_pred CchHHHHHHHhhcCCChHHHHHHHccCCC---CCcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHH
Q 037713 38 GPLPNTLIDAYGKCDLVQYAHHLLEEMPQ---RDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKA 114 (610)
Q Consensus 38 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~ 114 (610)
+....-.+......|+.++|++++.+... .+...+..+...+.+.|++++|.++|++..+.. +.+...+..+...
T Consensus 15 ~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~ 92 (765)
T PRK10049 15 NNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGLILT 92 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 33444556666777888888888877653 233347777778888888888888888877732 2234455566667
Q ss_pred HhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCC--C-ChhhHHHHHHHHHhcCCHHHHH
Q 037713 115 CGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKL--K-NSVSWTAMLSAYARSGRKKDAM 191 (610)
Q Consensus 115 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~ 191 (610)
+...|+.++|...++.+++.. +.+.. +..+..++...|+.++|...++++.+ | +...+..+...+.+.|..++|.
T Consensus 93 l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al 170 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPAL 170 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH
Confidence 778888888888888887764 55555 77777888888888888888887763 2 4556666777777788888888
Q ss_pred HHHhhCCCCChh--------hHHHHHHHHH-----hCCCh---HHHHHHHHHHHHcCCCCCCHh-HHH----HHHHHHhc
Q 037713 192 EIFEQAPVRNLF--------LWTALVSGLV-----QSRNE---IDAFYSFIEMRREGVDIVDPL-VLS----SIVGACAN 250 (610)
Q Consensus 192 ~~~~~~~~~~~~--------~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~~~~~p~~~-t~~----~ll~~~~~ 250 (610)
+.+++... ++. ....++.... ..+++ ++|++.++.+.+.-...|+.. .+. ..+.++..
T Consensus 171 ~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~ 249 (765)
T PRK10049 171 GAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLA 249 (765)
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHH
Confidence 88877665 211 1222222222 12234 678888888876421113221 111 11334456
Q ss_pred cccHHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-------hhHHHHHHHHHHhcCChHH
Q 037713 251 FAVLELGKQIHGLVIALGYE-SCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKD-------VVSWTSIIVGTAQHGQAEE 322 (610)
Q Consensus 251 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~ 322 (610)
.++.++|...++.+.+.+.+ |+. ....+...|...|++++|+..|+++.+.+ ...+..+..++...|++++
T Consensus 250 ~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~e 328 (765)
T PRK10049 250 RDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPG 328 (765)
T ss_pred hhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHH
Confidence 68888888888888877532 221 22235678888889999988888875422 2345556667888899999
Q ss_pred HHHHHHHHHHcCC-----------CCCH---HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhc
Q 037713 323 TLALYDEMVSAGV-----------KPNE---VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRS 388 (610)
Q Consensus 323 A~~l~~~m~~~g~-----------~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 388 (610)
|..+++++..... .|+. ..+..+...+...|+.++|++.++++.. ..+.+...+..+..++...
T Consensus 329 A~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~~ 406 (765)
T PRK10049 329 ALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQAR 406 (765)
T ss_pred HHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhc
Confidence 9998888876521 1232 2345566777788888888888888876 3455677888888888888
Q ss_pred CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcc
Q 037713 389 GHLDEAENLIKAM-PFEPD-EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSS 443 (610)
Q Consensus 389 g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 443 (610)
|++++|++.+++. ...|+ ...+..+...+...|++++|+.+++++++..|+++.+
T Consensus 407 g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 407 GWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 8888888888887 55665 4555566666788888888888888888888887643
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-16 Score=171.32 Aligned_cols=387 Identities=10% Similarity=-0.003 Sum_probs=273.4
Q ss_pred HHHHHhhcCCChHHHHHHHccCC--CCCcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCC-ChhhHHHHHHHHhccC
Q 037713 43 TLIDAYGKCDLVQYAHHLLEEMP--QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQP-DHFVFASLVKACGSLG 119 (610)
Q Consensus 43 ~li~~~~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-d~~~~~~ll~~~~~~~ 119 (610)
.+.+.|.+.|+++.|.+.|++.. .|+...|..+..+|.+.|++++|++.++...+ ..| +...+..+..++...|
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~---l~p~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALE---LDPDYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHcC
Confidence 44566677777888887777654 35666677777777777888888887777776 334 4456666777777777
Q ss_pred CcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcC-----------------------------CCC
Q 037713 120 ATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIK-----------------------------LKN 170 (610)
Q Consensus 120 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----------------------------~~~ 170 (610)
++++|..-+..+...+-..+... ..++.-+.+......+...++.-+ +.+
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNEQS-AQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELD 287 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccc
Confidence 77777776665544321111111 111111111001111222211111 000
Q ss_pred h---hhHHHHHHHH---HhcCCHHHHHHHHhhCCCC------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCH
Q 037713 171 S---VSWTAMLSAY---ARSGRKKDAMEIFEQAPVR------NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDP 238 (610)
Q Consensus 171 ~---~~~~~li~~~---~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~ 238 (610)
. ..+..+...+ ...+++++|.+.|++.... +...|+.+...+...|++++|+..|++..+.. |.+.
T Consensus 288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~--P~~~ 365 (615)
T TIGR00990 288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD--PRVT 365 (615)
T ss_pred cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcH
Confidence 0 0111111111 2246889999999876532 34678888899999999999999999998865 2456
Q ss_pred hHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHH
Q 037713 239 LVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR--K-DVVSWTSIIVGTA 315 (610)
Q Consensus 239 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~ 315 (610)
..|..+...+...|+++.|...++.+.+.. +.+..++..+...|...|++++|...|++..+ | +...|..+...+.
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~ 444 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHH
Confidence 788888899999999999999999998874 45678899999999999999999999999864 3 5677888999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCH--------HHHHHHHHHHHh
Q 037713 316 QHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSL--------QHYTCLLDLLSR 387 (610)
Q Consensus 316 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~--------~~~~~li~~~~~ 387 (610)
+.|++++|+..|++..+.. +-+...++.+..++...|++++|...|+...+. .|+. ..++.....+..
T Consensus 445 ~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~~~~~ 520 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLINKALALFQW 520 (615)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHHHHHHHHHH
Confidence 9999999999999988752 235778888999999999999999999998763 2321 112222334455
Q ss_pred cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC
Q 037713 388 SGHLDEAENLIKAM-PFEPD-EPTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440 (610)
Q Consensus 388 ~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 440 (610)
.|++++|.+++++. ...|+ ...+..+...+...|++++|...|+++.++.+..
T Consensus 521 ~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 521 KQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTE 575 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccH
Confidence 79999999999986 55565 4568889999999999999999999999887653
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-16 Score=176.16 Aligned_cols=390 Identities=13% Similarity=0.051 Sum_probs=296.7
Q ss_pred HHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHh
Q 037713 73 ASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAK 152 (610)
Q Consensus 73 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 152 (610)
.-.+......|+.++|++++.+..... +.+...+..+..++...|++++|..+++.+++.. +.+...+..+..++.+
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 344556678899999999999987622 3455568888899999999999999999998874 5567778889999999
Q ss_pred CCChHHHHHHHHhcCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCChHHHHHHHH
Q 037713 153 CGLPNNARAVFDSIKL--K-NSVSWTAMLSAYARSGRKKDAMEIFEQAPVR---NLFLWTALVSGLVQSRNEIDAFYSFI 226 (610)
Q Consensus 153 ~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~ 226 (610)
.|++++|...+++... | +.. |..+...+...|+.++|...++++... +...+..+...+...|..++|++.++
T Consensus 96 ~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 9999999999999863 3 455 888999999999999999999987643 55667778888999999999999987
Q ss_pred HHHHcCCCCCCHh------HHHHHHHHHh-----ccccH---HHHHHHHHHHHHh-CCCCchh-H-HHH---HHHHHHhc
Q 037713 227 EMRREGVDIVDPL------VLSSIVGACA-----NFAVL---ELGKQIHGLVIAL-GYESCLF-I-SNA---IVDMYAKC 286 (610)
Q Consensus 227 ~m~~~~~~~p~~~------t~~~ll~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~-~~~---li~~y~~~ 286 (610)
.... . |+.. ....++.... ..+.+ +.|...++.+.+. ...|+.. . ... .+.++...
T Consensus 175 ~~~~---~-p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~ 250 (765)
T PRK10049 175 DANL---T-PAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLAR 250 (765)
T ss_pred hCCC---C-HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHh
Confidence 6654 1 3320 1111222221 12233 6677778877764 2223221 1 111 12344577
Q ss_pred CCHHHHHHHHHhcCCCC---h-hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhccCCHHHHH
Q 037713 287 SDIIAAKDIFGRMRRKD---V-VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKP---NEVTFVGLIYACSHVGLVGKGR 359 (610)
Q Consensus 287 g~~~~A~~~~~~~~~~~---~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~ 359 (610)
|++++|+..|+.+.+.+ + ..-..+...|...|++++|+..|+++....... .......+..++...|++++|.
T Consensus 251 g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~ 330 (765)
T PRK10049 251 DRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGAL 330 (765)
T ss_pred hhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHH
Confidence 99999999999998632 1 122225778999999999999999987653211 1345666777889999999999
Q ss_pred HHHHHhHHhcC----------CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchh
Q 037713 360 KLFKSMIEDYG----------ITPS---LQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTE 424 (610)
Q Consensus 360 ~~~~~~~~~~~----------~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~ 424 (610)
++++.+.+... -.|+ ...+..+...+...|++++|+++++++ ...| +...+..+...+...|+++
T Consensus 331 ~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~ 410 (765)
T PRK10049 331 TVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPR 410 (765)
T ss_pred HHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Confidence 99999976311 1122 235567888999999999999999998 3344 5677888888999999999
Q ss_pred HHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhC
Q 037713 425 MGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 425 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 470 (610)
+|++.++++++++|+++..+..++..+...|+|++|..+++.+.+.
T Consensus 411 ~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 411 AAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999998754
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-16 Score=171.30 Aligned_cols=348 Identities=10% Similarity=-0.009 Sum_probs=207.8
Q ss_pred cCCChHHHHHHHccCCCC------CcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHH
Q 037713 50 KCDLVQYAHHLLEEMPQR------DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRL 123 (610)
Q Consensus 50 ~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~ 123 (610)
+..+++.---.|..-++. +..-...++..+.+.|++++|+.+++...... +-+...+..++.+....|+++.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHH
Confidence 445555554455544421 23334455667778888888888888877743 2233344445555666788888
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHhhCC--
Q 037713 124 GKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKL--K-NSVSWTAMLSAYARSGRKKDAMEIFEQAP-- 198 (610)
Q Consensus 124 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~-- 198 (610)
|...++.+++.. |.+...+..+...+.+.|++++|...|++... | +...|..+...+...|+.++|...++++.
T Consensus 95 A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 95 VLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 888888887765 55566677777777777777777777766652 2 34455555555556666666555555432
Q ss_pred CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHH
Q 037713 199 VR-NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISN 277 (610)
Q Consensus 199 ~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 277 (610)
.| +...+..+ ..+.+.|++++|+..++.+.+... .++.....
T Consensus 174 ~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~------------------------------------~~~~~~~~ 216 (656)
T PRK15174 174 VPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFA------------------------------------LERQESAG 216 (656)
T ss_pred CCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCC------------------------------------CcchhHHH
Confidence 11 22222222 224555555555555555544332 12222223
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 037713 278 AIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEE----TLALYDEMVSAGVKPNEVTFVGLIYACS 350 (610)
Q Consensus 278 ~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 350 (610)
.+...+.+.|++++|...|++... .+...+..+...+...|++++ |+..|++..+... .+...+..+...+.
T Consensus 217 ~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~ 295 (656)
T PRK15174 217 LAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS-DNVRIVTLYADALI 295 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHH
Confidence 334455555666666655555542 244555666666666666664 6777777766422 24556667777777
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHH-HHHHHHHhcCchhHHHH
Q 037713 351 HVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPDEPTWA-ALLSACKHHRNTEMGTR 428 (610)
Q Consensus 351 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~-~ll~~~~~~g~~~~a~~ 428 (610)
..|++++|...++...+. -+.+...+..+..+|.+.|++++|.+.++++ ...|+...+. .+..++...|+.++|..
T Consensus 296 ~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~ 373 (656)
T PRK15174 296 RTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAES 373 (656)
T ss_pred HCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHH
Confidence 777777777777777653 2333456666777777778888877777776 3455543333 34455777788888888
Q ss_pred HHHHHhcCCCCC
Q 037713 429 VANHLLSLKPED 440 (610)
Q Consensus 429 ~~~~~~~~~p~~ 440 (610)
.++++++..|++
T Consensus 374 ~l~~al~~~P~~ 385 (656)
T PRK15174 374 VFEHYIQARASH 385 (656)
T ss_pred HHHHHHHhChhh
Confidence 888888777765
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.7e-15 Score=161.04 Aligned_cols=416 Identities=11% Similarity=0.023 Sum_probs=195.7
Q ss_pred hhcCCChHHHHHHHccCCCCCcc---hHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHH
Q 037713 48 YGKCDLVQYAHHLLEEMPQRDHV---SWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG 124 (610)
Q Consensus 48 ~~~~g~~~~A~~~f~~m~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a 124 (610)
..+.|+++.|+..|++..+.++. ....++..+...|+.++|+..+++.... ..........+...+...|+++.|
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p--~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS--MNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC--CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 34556666666666555432211 1225555555556666666666555411 011111122223344455666666
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHh--cCCHHHHHHHHhhCCCC--
Q 037713 125 KQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYAR--SGRKKDAMEIFEQAPVR-- 200 (610)
Q Consensus 125 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~-- 200 (610)
.++++.+++.. +.+..++..++..|...++.++|++.++++...+......+..+|.. .++..+|++.++++...
T Consensus 122 iely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P 200 (822)
T PRK14574 122 LALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAP 200 (822)
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCC
Confidence 66666665554 33445555555566666666666666666554332222222223322 33333455555555422
Q ss_pred -ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhH------HHHHHHHH-----hcccc---HHHHHHHHHHHH
Q 037713 201 -NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLV------LSSIVGAC-----ANFAV---LELGKQIHGLVI 265 (610)
Q Consensus 201 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t------~~~ll~~~-----~~~~~---~~~a~~~~~~~~ 265 (610)
+...+..+..++.+.|-...|+++..+-... +. +...- ....+..- ..... .+.+..-++.+.
T Consensus 201 ~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~-~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~ 278 (822)
T PRK14574 201 TSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VS-AEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLL 278 (822)
T ss_pred CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cC-HHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHH
Confidence 3344455555555666655555444332110 00 00000 00000000 00111 222222233322
Q ss_pred Hh-CC-CCchhH-HHH---HHHHHHhcCCHHHHHHHHHhcCCC----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-
Q 037713 266 AL-GY-ESCLFI-SNA---IVDMYAKCSDIIAAKDIFGRMRRK----DVVSWTSIIVGTAQHGQAEETLALYDEMVSAG- 334 (610)
Q Consensus 266 ~~-~~-~~~~~~-~~~---li~~y~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g- 334 (610)
.. +- ++.... ..+ .+-++.+.|+..++++.|+.+..+ ...+--++.++|...+++++|+.+|+.+....
T Consensus 279 ~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~ 358 (822)
T PRK14574 279 TRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDG 358 (822)
T ss_pred hhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccc
Confidence 21 11 111111 112 223444556666666666666532 22344455566666666666666666654432
Q ss_pred ----CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC----------CCCCH---HHHHHHHHHHHhcCCHHHHHHH
Q 037713 335 ----VKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYG----------ITPSL---QHYTCLLDLLSRSGHLDEAENL 397 (610)
Q Consensus 335 ----~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----------~~~~~---~~~~~li~~~~~~g~~~~A~~~ 397 (610)
..++......|..++...+++++|..+++.+.+... -.|+. ..+..++..+...|++.+|++.
T Consensus 359 ~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~ 438 (822)
T PRK14574 359 KTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKK 438 (822)
T ss_pred cccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 111222234556666666666666666666654210 01111 2333445555566666666666
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHh
Q 037713 398 IKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMS 468 (610)
Q Consensus 398 ~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 468 (610)
++++ ...| |...+..+...+...|.+..|++.++.+..++|++......++..+...|+|.+|.++.+...
T Consensus 439 le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~ 511 (822)
T PRK14574 439 LEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVI 511 (822)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 6665 2222 455555555556666666666666666666666666666666666666666666665554443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.5e-16 Score=167.02 Aligned_cols=329 Identities=12% Similarity=-0.019 Sum_probs=229.8
Q ss_pred hHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCC
Q 037713 107 VFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGR 186 (610)
Q Consensus 107 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~ 186 (610)
....++..+.+.|+++.|..++...+... +.+......++......|++++|...|+++...+
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~---------------- 106 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN---------------- 106 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC----------------
Confidence 34445555666677777777766666654 3333344444455555666665555555543210
Q ss_pred HHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHH
Q 037713 187 KKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIA 266 (610)
Q Consensus 187 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 266 (610)
..+...|..+...+.+.|++++|+..|+++.+.. |.+...+..+..++...|+.+.|...+..+..
T Consensus 107 ------------P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~--P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 107 ------------VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF--SGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred ------------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 1133445555555556666666666666655543 23455555566666666666666666665554
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 037713 267 LGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK----DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTF 342 (610)
Q Consensus 267 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 342 (610)
.... +...+..+ ..+.+.|++++|...++.+.+. +...+..+...+...|++++|+..|++..+... .+...+
T Consensus 173 ~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~ 249 (656)
T PRK15174 173 EVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALR 249 (656)
T ss_pred hCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHH
Confidence 4322 22223223 2367789999999999887643 334455567788999999999999999998642 356777
Q ss_pred HHHHHHHhccCCHHH----HHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH
Q 037713 343 VGLIYACSHVGLVGK----GRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD-EPTWAALLSA 416 (610)
Q Consensus 343 ~~ll~a~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~ 416 (610)
..+..++...|++++ |...|+.+.+. .+.+...+..+...+.+.|++++|...+++. ...|+ ...+..+..+
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~ 327 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 888999999999986 89999998773 3445788999999999999999999999988 45565 5567778888
Q ss_pred HHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhCC
Q 037713 417 CKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVME 471 (610)
Q Consensus 417 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 471 (610)
+...|++++|...++++.+.+|+++..+..++.++...|++++|...++...+..
T Consensus 328 l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999887667777889999999999999999876543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-14 Score=156.67 Aligned_cols=423 Identities=12% Similarity=0.036 Sum_probs=320.4
Q ss_pred hhccCChHHHHHHHHHHHHhCCCCCCchHHHHHHHhhcCCChHHHHHHHccCCCCCcchH-HHH--HHHHHcCCCchHHH
Q 037713 13 CARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSW-ASI--LTAYNQANLPQKTI 89 (610)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~-~~l--i~~~~~~g~~~~A~ 89 (610)
..+.|+...|...+..+++......+.++ .++..+...|+.++|+..+++...|+...+ ..+ ...+...|++++|+
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 45789999999999999887533223455 888999999999999999999887744443 333 34677889999999
Q ss_pred HHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCC-
Q 037713 90 SIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKL- 168 (610)
Q Consensus 90 ~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~- 168 (610)
++|+++.+.. +-|...+..+...+...++.++|++.++.+.+. .|+...+..++..+...++..+|.+.++++.+
T Consensus 123 ely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 123 ALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 9999999854 224556667778888999999999999999876 45555565566666567777679999999973
Q ss_pred -C-ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCC-ChhhHH----HHHHHHH---------hCCC---hHHHHHHHHHHH
Q 037713 169 -K-NSVSWTAMLSAYARSGRKKDAMEIFEQAPVR-NLFLWT----ALVSGLV---------QSRN---EIDAFYSFIEMR 229 (610)
Q Consensus 169 -~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~----~li~~~~---------~~g~---~~~A~~~~~~m~ 229 (610)
| +...+..+...+.+.|-...|.++..+-+.- +...+. ..+.-.+ ...+ .+.|+.-++.+.
T Consensus 199 ~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~ 278 (822)
T PRK14574 199 APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLL 278 (822)
T ss_pred CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHH
Confidence 3 5677888999999999999999999886632 111110 0111111 1122 345666666655
Q ss_pred Hc-CCCCCCHhHH----HHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--
Q 037713 230 RE-GVDIVDPLVL----SSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK-- 302 (610)
Q Consensus 230 ~~-~~~~p~~~t~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-- 302 (610)
.. +..|+....| .=.+.++...++..++...++.+...+.+....+-.++.++|...++.++|..+|.++...
T Consensus 279 ~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~ 358 (822)
T PRK14574 279 TRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDG 358 (822)
T ss_pred hhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccc
Confidence 42 2222322222 2345677888999999999999999987766778899999999999999999999998542
Q ss_pred -------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-------------CCCHH-HHHHHHHHHhccCCHHHHHHH
Q 037713 303 -------DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGV-------------KPNEV-TFVGLIYACSHVGLVGKGRKL 361 (610)
Q Consensus 303 -------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-------------~p~~~-t~~~ll~a~~~~g~~~~a~~~ 361 (610)
+......|.-+|...+++++|..+++++.+.-. .||-. .+..++..+...|++.+|++.
T Consensus 359 ~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~ 438 (822)
T PRK14574 359 KTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKK 438 (822)
T ss_pred cccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 233357789999999999999999999987321 12222 234456778899999999999
Q ss_pred HHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCC
Q 037713 362 FKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD-EPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439 (610)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 439 (610)
++++.. .-+-|......+.+.+...|.+.+|++.++.. .+.|+ ..+......++...+++++|..+.+.+.+..|+
T Consensus 439 le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe 516 (822)
T PRK14574 439 LEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPE 516 (822)
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCC
Confidence 999976 46778899999999999999999999999877 55665 455667777788999999999999999999999
Q ss_pred CCc
Q 037713 440 DPS 442 (610)
Q Consensus 440 ~~~ 442 (610)
++.
T Consensus 517 ~~~ 519 (822)
T PRK14574 517 DIP 519 (822)
T ss_pred chh
Confidence 863
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.3e-13 Score=128.51 Aligned_cols=396 Identities=13% Similarity=0.124 Sum_probs=251.9
Q ss_pred HHhhhhhhccCChHHHHHHHHHHHHhCCCCCCchHHHHHHHhh--cCCCh-------------------------HHHHH
Q 037713 7 LHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYG--KCDLV-------------------------QYAHH 59 (610)
Q Consensus 7 ~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~--~~g~~-------------------------~~A~~ 59 (610)
+.+++. ...+.+.++--++++|...|.+.++.+--.|+...+ ...++ +-|.
T Consensus 120 ~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAd- 197 (625)
T KOG4422|consen 120 NNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVAD- 197 (625)
T ss_pred hHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHH-
Confidence 334443 345778888889999999988777666555443322 11111 1122
Q ss_pred HHccCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCC
Q 037713 60 LLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD 139 (610)
Q Consensus 60 ~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 139 (610)
++-+...++..+|.+||.++++-...+.|.+++++-.+.. .+.+..+||.+|.+-+ +..++.+..+|+...+.||
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k-~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pn 272 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAK-GKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPN 272 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh-heeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCc
Confidence 3333333466788899999998888899999998887765 6788889998887754 3344788888888888999
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCC----CCChhhHHHHHHHHHhC
Q 037713 140 DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP----VRNLFLWTALVSGLVQS 215 (610)
Q Consensus 140 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~ 215 (610)
..|+|+++.+..+.|+++.|++.+ .+++.+|+ +|...+|..+|..+.+.
T Consensus 273 l~TfNalL~c~akfg~F~~ar~aa---------------------------lqil~EmKeiGVePsLsSyh~iik~f~re 325 (625)
T KOG4422|consen 273 LFTFNALLSCAAKFGKFEDARKAA---------------------------LQILGEMKEIGVEPSLSSYHLIIKNFKRE 325 (625)
T ss_pred hHhHHHHHHHHHHhcchHHHHHHH---------------------------HHHHHHHHHhCCCcchhhHHHHHHHhccc
Confidence 999999999999999888776643 33333332 56677888888888877
Q ss_pred CChHH-HHHHHHHHHHc----C---CCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhC----CCCc---hhHHHHHH
Q 037713 216 RNEID-AFYSFIEMRRE----G---VDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALG----YESC---LFISNAIV 280 (610)
Q Consensus 216 g~~~~-A~~~~~~m~~~----~---~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~li 280 (610)
+++.+ |..++.+.+.. . +.|.|...|...++.|.+..+.+.|.+++....... +.|+ ..-|..+.
T Consensus 326 ~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~ 405 (625)
T KOG4422|consen 326 SDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFF 405 (625)
T ss_pred CCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHH
Confidence 77644 44455554432 1 223567788999999999999999999998775431 2232 24466677
Q ss_pred HHHHhcCCHHHHHHHHHhcCC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC-H
Q 037713 281 DMYAKCSDIIAAKDIFGRMRR----KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGL-V 355 (610)
Q Consensus 281 ~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~ 355 (610)
.+.+.....+.-...|+.|.. |+..+-..++.+..-.|.++-.-+++.+|+..|..-+...-.-++.-+++..- .
T Consensus 406 ~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp 485 (625)
T KOG4422|consen 406 DLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHP 485 (625)
T ss_pred HHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCC
Confidence 788888888888888888874 56777777888888888888888888888887644444333333333333220 0
Q ss_pred --------HH-----HHHHHHHh---HHh-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCHHHHH
Q 037713 356 --------GK-----GRKLFKSM---IED-YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-------PFEPDEPTWA 411 (610)
Q Consensus 356 --------~~-----a~~~~~~~---~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~ 411 (610)
.. |..+++.. .++ ..........++..-.+.|.|+.++|.++|.-. +..|......
T Consensus 486 ~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~ 565 (625)
T KOG4422|consen 486 LTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMA 565 (625)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHH
Confidence 00 00111000 000 012223345556666666666666666665443 2333333333
Q ss_pred HHHHHHHhcCchhHHHHHHHHHhcC
Q 037713 412 ALLSACKHHRNTEMGTRVANHLLSL 436 (610)
Q Consensus 412 ~ll~~~~~~g~~~~a~~~~~~~~~~ 436 (610)
-++.+....++...|..+++-+...
T Consensus 566 El~d~a~~~~spsqA~~~lQ~a~~~ 590 (625)
T KOG4422|consen 566 ELMDSAKVSNSPSQAIEVLQLASAF 590 (625)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 4445555555566666665555433
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.5e-14 Score=144.53 Aligned_cols=443 Identities=11% Similarity=0.077 Sum_probs=289.7
Q ss_pred hHHHHHHHHHHHHhCCCCCCchHHHHHHHhhcCCChHHHHHHHccCCCCC------cchHHHHHHHHHcCCCchHHHHHH
Q 037713 19 ALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRD------HVSWASILTAYNQANLPQKTISIF 92 (610)
Q Consensus 19 ~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~------~~~~~~li~~~~~~g~~~~A~~~~ 92 (610)
...|.+++...-+.. ..+|.+.|.|.+.|.-.|++..+..+...+...+ ..+|-.+.++|-..|++++|...|
T Consensus 252 ~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY 330 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYY 330 (1018)
T ss_pred HHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 334444444443332 2356677777777777777777777766655322 334666777777777777777777
Q ss_pred HHhHHCCCCCCChhhHHH--HHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCC----ChHHHHHHHHhc
Q 037713 93 STMLALDKLQPDHFVFAS--LVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCG----LPNNARAVFDSI 166 (610)
Q Consensus 93 ~~m~~~~~~~pd~~~~~~--ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m 166 (610)
.+..+ ..||.+++.. |...+...|+++.+...|+.+.+.. +.+..+...|...|+..+ ..+.|..++.+.
T Consensus 331 ~~s~k---~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~ 406 (1018)
T KOG2002|consen 331 MESLK---ADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKV 406 (1018)
T ss_pred HHHHc---cCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHH
Confidence 76665 3455544443 4566677777777777777777653 455566666666666664 455666666655
Q ss_pred CCC---ChhhHHHHHHHHHhcCCH------HHHHHHHhh-CCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHc---CC
Q 037713 167 KLK---NSVSWTAMLSAYARSGRK------KDAMEIFEQ-APVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRRE---GV 233 (610)
Q Consensus 167 ~~~---~~~~~~~li~~~~~~g~~------~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~ 233 (610)
..+ |+..|-.+...|....-+ ..|..++.. +....+...|.+...+...|.+++|...|...... ..
T Consensus 407 ~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~ 486 (1018)
T KOG2002|consen 407 LEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVA 486 (1018)
T ss_pred HhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhc
Confidence 533 555666655555443332 223322222 22335567777777888888888888888877654 11
Q ss_pred CCCCH------hHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCh
Q 037713 234 DIVDP------LVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDV 304 (610)
Q Consensus 234 ~~p~~------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~ 304 (610)
. +|. .+--.+....-..++.+.|.+.|..+.+.. +.-+..|--|+-+.-..+...+|...++.... .|+
T Consensus 487 n-~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np 564 (1018)
T KOG2002|consen 487 N-KDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNP 564 (1018)
T ss_pred C-ccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCc
Confidence 1 233 122234444455667788888888877753 11122222222222233567778888877763 567
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhc------------cCCHHHHHHHHHHhHHhcCC
Q 037713 305 VSWTSIIVGTAQHGQAEETLALYDEMVSA-GVKPNEVTFVGLIYACSH------------VGLVGKGRKLFKSMIEDYGI 371 (610)
Q Consensus 305 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~------------~g~~~~a~~~~~~~~~~~~~ 371 (610)
..|+-+...+.....+..|.+-|...... ...+|..+..+|.+.|.. .+..++|+++|.+..+ .-
T Consensus 565 ~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~d 642 (1018)
T KOG2002|consen 565 NARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--ND 642 (1018)
T ss_pred HHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cC
Confidence 78888887888888888888877665542 233677777777776553 2456788888888876 34
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCC--CCCCcchHhH
Q 037713 372 TPSLQHYTCLLDLLSRSGHLDEAENLIKAM--PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLK--PEDPSSYILL 447 (610)
Q Consensus 372 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l 447 (610)
+.|...-+-+.-.++..|++.+|..+|.+. ....+..+|-.+...|...|++-.|+++|+..++.. .+++.....|
T Consensus 643 pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~L 722 (1018)
T KOG2002|consen 643 PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYL 722 (1018)
T ss_pred cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHH
Confidence 557777788888899999999999999988 223355678999999999999999999999988543 3466778899
Q ss_pred HHHhhhhcchhHHHHHHHHHhhC
Q 037713 448 SNVYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 448 ~~~~~~~g~~~~a~~~~~~m~~~ 470 (610)
+.++.+.|+|.+|.+........
T Consensus 723 ara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 723 ARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHh
Confidence 99999999999999887766543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-14 Score=137.59 Aligned_cols=439 Identities=12% Similarity=0.066 Sum_probs=304.5
Q ss_pred hhhhhhccCChHHHHHHHHHHHHhCCCCCCchH-HHHHHHhhcCCChHHHHHHHccCC----CCC----cchHHHHHHHH
Q 037713 9 RLRVCARHQIALTVKTLHAQIIKLGLHQYGPLP-NTLIDAYGKCDLVQYAHHLLEEMP----QRD----HVSWASILTAY 79 (610)
Q Consensus 9 ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~f~~m~----~~~----~~~~~~li~~~ 79 (610)
+-+.+.......+|...++.+++....|+.-.. -.+-+.+.+...+..|++.++... .-+ .-..|.+--.|
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 344455556677888888888888877775433 234567788889999999876443 222 22345555578
Q ss_pred HcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCCh------------hHHHHHH
Q 037713 80 NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD------------VVKSSLV 147 (610)
Q Consensus 80 ~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~------------~~~~~li 147 (610)
.+.|.++.|+..|+...+ ..|+..+-..|+-++...|+.+..++.|..|+.....+|. ...|.-+
T Consensus 287 iq~gqy~dainsfdh~m~---~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai 363 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCME---EAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAI 363 (840)
T ss_pred EecccchhhHhhHHHHHH---hCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHH
Confidence 899999999999999888 4688877666776677789999999999999876433332 2222211
Q ss_pred -----HHHHhCCC--hHHHHHHHHhcC----CCChh---hH----------H--------HHHHHHHhcCCHHHHHHHHh
Q 037713 148 -----DMYAKCGL--PNNARAVFDSIK----LKNSV---SW----------T--------AMLSAYARSGRKKDAMEIFE 195 (610)
Q Consensus 148 -----~~~~~~g~--~~~A~~~~~~m~----~~~~~---~~----------~--------~li~~~~~~g~~~~A~~~~~ 195 (610)
.-+-+..+ .+++.-.--++. .+|-. -| . .-..-|.+.|+++.|.+++.
T Consensus 364 ~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilk 443 (840)
T KOG2003|consen 364 KNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILK 443 (840)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHH
Confidence 11111111 122221111222 22210 01 0 01123578899999988887
Q ss_pred hCCCCChhhH----HHH-HHHHHhC-CChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCC
Q 037713 196 QAPVRNLFLW----TAL-VSGLVQS-RNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGY 269 (610)
Q Consensus 196 ~~~~~~~~~~----~~l-i~~~~~~-g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 269 (610)
-...+|..+- |.| +--|.+- .++.+|.+.-+..+...- -++.....--......|++++|.+.+.++....-
T Consensus 444 v~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr--yn~~a~~nkgn~~f~ngd~dka~~~ykeal~nda 521 (840)
T KOG2003|consen 444 VFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR--YNAAALTNKGNIAFANGDLDKAAEFYKEALNNDA 521 (840)
T ss_pred HHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc--cCHHHhhcCCceeeecCcHHHHHHHHHHHHcCch
Confidence 7665544322 222 2223333 346666666665544321 2333333333334567899999999999987643
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037713 270 ESCLFISNAIVDMYAKCSDIIAAKDIFGRMR---RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLI 346 (610)
Q Consensus 270 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 346 (610)
......|| +.-.+-+.|++++|+..|-++. ..++...-.+...|-...+..+|++++.+.... ++-|...+..|.
T Consensus 522 sc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~ 599 (840)
T KOG2003|consen 522 SCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLA 599 (840)
T ss_pred HHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHH
Confidence 33333343 3445778999999999998775 467778888888999999999999999877654 455677888899
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH-HhcCchh
Q 037713 347 YACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPDEPTWAALLSAC-KHHRNTE 424 (610)
Q Consensus 347 ~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~-~~~g~~~ 424 (610)
..|-+.|+-.+|.+.+-.--. -++.+.++..-|..-|....-+++|...|++. -+.|+..-|..++..| ++.|+++
T Consensus 600 dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyq 677 (840)
T KOG2003|consen 600 DLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQ 677 (840)
T ss_pred HHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHH
Confidence 999999999999998765433 35668899999999999999999999999998 6789999999998885 6789999
Q ss_pred HHHHHHHHHhcCCCCCCcchHhHHHHhhhhcc
Q 037713 425 MGTRVANHLLSLKPEDPSSYILLSNVYASAAM 456 (610)
Q Consensus 425 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 456 (610)
+|..+++......|.+......|++++...|.
T Consensus 678 ka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 678 KAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 99999999999999999999999999887774
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.7e-12 Score=133.22 Aligned_cols=360 Identities=11% Similarity=0.031 Sum_probs=189.7
Q ss_pred hhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHHhCCChHHHHHHHHhcCCC--C--hhhHHHHHH
Q 037713 106 FVFASLVKACGSLGATRLGKQVHACFVLSPFCDD--DVVKSSLVDMYAKCGLPNNARAVFDSIKLK--N--SVSWTAMLS 179 (610)
Q Consensus 106 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~--~~~~~~li~ 179 (610)
...+.|-+-+.-.|+...+..+...+.+...... ...|--+..+|-..|++++|...|....+. | +..+--+..
T Consensus 271 ~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQ 350 (1018)
T KOG2002|consen 271 VALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQ 350 (1018)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhH
Confidence 3344444444444555555555444444321111 112333444555555555555555444321 1 222333444
Q ss_pred HHHhcCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHhCC----ChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccc
Q 037713 180 AYARSGRKKDAMEIFEQAPVR---NLFLWTALVSGLVQSR----NEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFA 252 (610)
Q Consensus 180 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~ 252 (610)
.|.+.|+++.|...|+.+... +..+...|...|+..+ ..+.|..++.+..+.- |.|...|..+...+-...
T Consensus 351 m~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~--~~d~~a~l~laql~e~~d 428 (1018)
T KOG2002|consen 351 MYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT--PVDSEAWLELAQLLEQTD 428 (1018)
T ss_pred HHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc--cccHHHHHHHHHHHHhcC
Confidence 455555555555555544321 2233334444444443 2233333333333322 134444444444333222
Q ss_pred cHHHHHHHHHHHH----HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-------Ch------hHHHHHHHHHH
Q 037713 253 VLELGKQIHGLVI----ALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK-------DV------VSWTSIIVGTA 315 (610)
Q Consensus 253 ~~~~a~~~~~~~~----~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-------~~------~~~~~li~~~~ 315 (610)
-+ .+..++..+. ..+-++.+.+.|.+...+...|+++.|...|++.... |. .+--.+...+-
T Consensus 429 ~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E 507 (1018)
T KOG2002|consen 429 PW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLE 507 (1018)
T ss_pred hH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHH
Confidence 22 1233333222 2343455566666666666667777766666655421 11 11112333344
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 037713 316 QHGQAEETLALYDEMVSAGVKPNE-VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEA 394 (610)
Q Consensus 316 ~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 394 (610)
..++.+.|.+.|...... .|+- ..|..++...-..+...+|...+..... ....++..++.+.+.+.+...+..|
T Consensus 508 ~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~--~d~~np~arsl~G~~~l~k~~~~~a 583 (1018)
T KOG2002|consen 508 ELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALN--IDSSNPNARSLLGNLHLKKSEWKPA 583 (1018)
T ss_pred hhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh--cccCCcHHHHHHHHHHHhhhhhccc
Confidence 455666666666666654 3332 2233333222234566677777777665 3445555666666677777777777
Q ss_pred HHHHHhC----CCCCCHHHHHHHHHHHHh------------cCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchh
Q 037713 395 ENLIKAM----PFEPDEPTWAALLSACKH------------HRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQ 458 (610)
Q Consensus 395 ~~~~~~m----~~~p~~~~~~~ll~~~~~------------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 458 (610)
.+-|+.. ...+|+.+.-+|.+.|.. .+..++|++.|.+++..+|.|..+-+-++-+++..|+|.
T Consensus 584 ~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~ 663 (1018)
T KOG2002|consen 584 KKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFS 663 (1018)
T ss_pred ccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCch
Confidence 6644333 334677776666665532 356788899999999999998888888888999999999
Q ss_pred HHHHHHHHHhhCCC
Q 037713 459 HVSKVRKLMSVMEV 472 (610)
Q Consensus 459 ~a~~~~~~m~~~~~ 472 (610)
+|..+|...++...
T Consensus 664 ~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 664 EARDIFSQVREATS 677 (1018)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987655
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.3e-11 Score=117.45 Aligned_cols=454 Identities=11% Similarity=0.071 Sum_probs=246.3
Q ss_pred hhhccCChHHHHHHHHHHHHhCCCCCCchHHHHHHHhhcCCChHHHHHHHccCC---CCCcchHHHHHHHHHcCCCchHH
Q 037713 12 VCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP---QRDHVSWASILTAYNQANLPQKT 88 (610)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A 88 (610)
+.......+.|+-++.+.++.- +.+. -|.-+|++..-++.|.+++.+.. ..+...|.+-...=-++|+.+..
T Consensus 385 aAVelE~~~darilL~rAvecc-p~s~----dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv 459 (913)
T KOG0495|consen 385 AAVELEEPEDARILLERAVECC-PQSM----DLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMV 459 (913)
T ss_pred HHHhccChHHHHHHHHHHHHhc-cchH----HHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHH
Confidence 3344455566666666666552 1122 23334555566677777765544 33566666655555566666666
Q ss_pred HHHHHH----hHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHHhCCChHHHHHH
Q 037713 89 ISIFST----MLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD--DVVKSSLVDMYAKCGLPNNARAV 162 (610)
Q Consensus 89 ~~~~~~----m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~ 162 (610)
..+..+ +...| +..+...|..=..+|-..|..-.+..+....+..|+... ..+|+.-.+.+.+.+.++-|+.+
T Consensus 460 ~kii~rgl~~L~~ng-v~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAV 538 (913)
T KOG0495|consen 460 EKIIDRGLSELQANG-VEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAV 538 (913)
T ss_pred HHHHHHHHHHHhhcc-eeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHH
Confidence 655543 33344 666666666656666666666666666666665554332 33555555666666666666666
Q ss_pred HHhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 037713 163 FDSIKL---KNSVSWTAMLSAYARSGRKKDAMEIFEQAPV---RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIV 236 (610)
Q Consensus 163 ~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p 236 (610)
|....+ .+...|...+..=-..|..+.-..+|.+... +..+.|-.....+-..|+...|..++.+..+... .
T Consensus 539 ya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p--n 616 (913)
T KOG0495|consen 539 YAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP--N 616 (913)
T ss_pred HHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC--C
Confidence 655442 2344454444444444444444444444321 1233344444444444555555555544444331 2
Q ss_pred CHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhH----------------------------------HHHHHHH
Q 037713 237 DPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFI----------------------------------SNAIVDM 282 (610)
Q Consensus 237 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------------------------------~~~li~~ 282 (610)
+...+...+..-.....++.|+.++...... .++..+ |-.+...
T Consensus 617 seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi 694 (913)
T KOG0495|consen 617 SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQI 694 (913)
T ss_pred cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHH
Confidence 3344444444444444455555544444332 233444 4444444
Q ss_pred HHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHH
Q 037713 283 YAKCSDIIAAKDIFGRMRR--K-DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGR 359 (610)
Q Consensus 283 y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 359 (610)
|-+.++++.|...|..=.+ | .+..|-.+...=-+.|..-.|..+|++.+-.+.+ |...|...|+.-.+.|+.++|.
T Consensus 695 ~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~ 773 (913)
T KOG0495|consen 695 EEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAE 773 (913)
T ss_pred HHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHH
Confidence 4444444444444443332 2 2233444444444444455555555544443322 4444445555555555555555
Q ss_pred HHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCC
Q 037713 360 KLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439 (610)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 439 (610)
.++.+..+ .++.+...|..-|.+..+.++-..+...+++- +-|+.....+...+....+++.|..-|+++++.+|+
T Consensus 774 ~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkc--e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d 849 (913)
T KOG0495|consen 774 LLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC--EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD 849 (913)
T ss_pred HHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhc--cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 55444444 23334444444444444444433333333333 346666667777788889999999999999999999
Q ss_pred CCcchHhHHHHhhhhcchhHHHHHHHHHhhCCCccCCcccEEE
Q 037713 440 DPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIE 482 (610)
Q Consensus 440 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~ 482 (610)
+..++..+-..+.+.|.-++-.++++..... .|.-|..|..
T Consensus 850 ~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~a 890 (913)
T KOG0495|consen 850 NGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQA 890 (913)
T ss_pred cchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHH
Confidence 9999999999999999999988998887643 2334555543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.2e-15 Score=143.73 Aligned_cols=257 Identities=15% Similarity=0.109 Sum_probs=113.7
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 037713 208 LVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287 (610)
Q Consensus 208 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 287 (610)
+...+.+.|++++|++++.+......+|.|...+..+...+-..++.+.|...++.+.+.+.. +...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 355667778888888888654443322134444555555666788888888888888776533 55667777777 6889
Q ss_pred CHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 037713 288 DIIAAKDIFGRMRR--KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAG-VKPNEVTFVGLIYACSHVGLVGKGRKLFKS 364 (610)
Q Consensus 288 ~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 364 (610)
++++|.+++...-+ ++...+..++..+.+.|+++++.+++++..... .+++...|..+...+.+.|+.++|.+.+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999998877643 567778888999999999999999999987643 345677788888999999999999999999
Q ss_pred hHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCc
Q 037713 365 MIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM--PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442 (610)
Q Consensus 365 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 442 (610)
..+. .+.|......++..+...|+.+++.++++.. ....|+..|..+..++...|+.++|...+++..+.+|+|+.
T Consensus 172 al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 172 ALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 9874 3335788889999999999999988888776 22345667889999999999999999999999999999999
Q ss_pred chHhHHHHhhhhcchhHHHHHHHHHh
Q 037713 443 SYILLSNVYASAAMWQHVSKVRKLMS 468 (610)
Q Consensus 443 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 468 (610)
....+++++...|+.++|.+++...-
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccc
Confidence 99999999999999999999887653
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.7e-12 Score=128.37 Aligned_cols=328 Identities=13% Similarity=0.146 Sum_probs=196.9
Q ss_pred cCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhc---CCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 037713 118 LGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSI---KLKNSVSWTAMLSAYARSGRKKDAMEIF 194 (610)
Q Consensus 118 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~~~~~~~~li~~~~~~g~~~~A~~~~ 194 (610)
.|++++|..++.++++.. +.....|-.|...|-..|+.+++...+-.. ...|..-|-.+.....+.|.++.|.-.|
T Consensus 152 rg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred hCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 366666666666666654 455556666666666666666665544322 2335555666666666666666666666
Q ss_pred hhCCCCChhhHH---HHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCC
Q 037713 195 EQAPVRNLFLWT---ALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYES 271 (610)
Q Consensus 195 ~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 271 (610)
.+..+.++.-|- --+..|-+.|+...|++.|.++.+...+ .|..-+..++
T Consensus 231 ~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~-~d~er~~d~i-------------------------- 283 (895)
T KOG2076|consen 231 SRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPP-VDIERIEDLI-------------------------- 283 (895)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCc-hhHHHHHHHH--------------------------
Confidence 655443332222 2234555566666666666666554421 1211111111
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcC------------
Q 037713 272 CLFISNAIVDMYAKCSDIIAAKDIFGRMRR-----KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAG------------ 334 (610)
Q Consensus 272 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------------ 334 (610)
-..+..|...++-+.|.+.++.... -+...++.++..|.....++.|......+....
T Consensus 284 -----~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~ 358 (895)
T KOG2076|consen 284 -----RRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE 358 (895)
T ss_pred -----HHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh
Confidence 1122333334444444444444332 123344455555555555555555555544411
Q ss_pred ---------------CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037713 335 ---------------VKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGI--TPSLQHYTCLLDLLSRSGHLDEAENL 397 (610)
Q Consensus 335 ---------------~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~ 397 (610)
+.++... .-+.-++.+....+....+.....+. .+ .-+...|.-+.++|...|++.+|+.+
T Consensus 359 ~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~ 436 (895)
T KOG2076|consen 359 RRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRL 436 (895)
T ss_pred hccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHH
Confidence 2222222 11222334444444444444444443 53 33568899999999999999999999
Q ss_pred HHhC---CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhCCCcc
Q 037713 398 IKAM---PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKK 474 (610)
Q Consensus 398 ~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 474 (610)
|..+ +..-+...|..+...|...|.++.|.+.+++++.+.|++..+-..|+.+|.+.|+.++|.+++..+..-+-..
T Consensus 437 l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~ 516 (895)
T KOG2076|consen 437 LSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRN 516 (895)
T ss_pred HHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccc
Confidence 9998 2223577999999999999999999999999999999999999999999999999999999998876333223
Q ss_pred CCcccE
Q 037713 475 EPGYSY 480 (610)
Q Consensus 475 ~~~~s~ 480 (610)
.+++.|
T Consensus 517 ~e~~a~ 522 (895)
T KOG2076|consen 517 AEACAW 522 (895)
T ss_pred hhhccc
Confidence 345554
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.4e-10 Score=119.90 Aligned_cols=436 Identities=11% Similarity=0.051 Sum_probs=245.0
Q ss_pred CChHHHHHHHHHHHHhCCCCCCchHHHHHHHhhcCCChHHHHHHHccC---CCCCcchHHHHHHHHHcCCCchHHHHHHH
Q 037713 17 QIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEM---PQRDHVSWASILTAYNQANLPQKTISIFS 93 (610)
Q Consensus 17 ~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m---~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 93 (610)
|+++.|..++..+++... .+...|-+|...|-..|+.+++...+-.. ...|..-|-.+-.-..+.|++++|.-.|.
T Consensus 153 g~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 899999999999988763 35667888999999999999888766433 34466778888888888899999999998
Q ss_pred HhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHH----HHHHHHhCCChHHHHHHHHhcCC-
Q 037713 94 TMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSS----LVDMYAKCGLPNNARAVFDSIKL- 168 (610)
Q Consensus 94 ~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~----li~~~~~~g~~~~A~~~~~~m~~- 168 (610)
+.++.. +++...+---...|-+.|+...|..-+.++.....+.|..-... .+..|...++-+.|.+.++....
T Consensus 232 rAI~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 232 RAIQAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHhcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 888853 34444444445667788888888888888887653333322222 34556667777888887776653
Q ss_pred -C---ChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---------------------------------------------
Q 037713 169 -K---NSVSWTAMLSAYARSGRKKDAMEIFEQAPV--------------------------------------------- 199 (610)
Q Consensus 169 -~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------------------------------------------- 199 (610)
. +...++.++..|.+...++.|......+..
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~ 389 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVH 389 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhc
Confidence 1 345667777777666666666655433221
Q ss_pred ----------------------CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHH
Q 037713 200 ----------------------RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG 257 (610)
Q Consensus 200 ----------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a 257 (610)
.++..|.-+..+|.+.|++.+|+.+|..+.....- -+...|-.+..++-..|..++|
T Consensus 390 L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~-~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 390 LKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGY-QNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred ccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccc-cchhhhHHHHHHHHHHhhHHHH
Confidence 01122333444455555555555555555444322 3344455555555555555555
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh------------hHHHHHHHHHHhcCChHHHHH
Q 037713 258 KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDV------------VSWTSIIVGTAQHGQAEETLA 325 (610)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~------------~~~~~li~~~~~~g~~~~A~~ 325 (610)
.+.++.++... +.+..+--+|...|-+.|+.++|.+++..+..||. ..--.....+.+.|+.++=+.
T Consensus 469 ~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~ 547 (895)
T KOG2076|consen 469 IEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFIN 547 (895)
T ss_pred HHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 55555555442 22233333444445555555555555555443331 111112233444455444444
Q ss_pred HHHHHHHcCCC-----CCH-----------------HHHHHHHHHHhccCCHHHHHHHHHH-----hHHhcCCCCC--HH
Q 037713 326 LYDEMVSAGVK-----PNE-----------------VTFVGLIYACSHVGLVGKGRKLFKS-----MIEDYGITPS--LQ 376 (610)
Q Consensus 326 l~~~m~~~g~~-----p~~-----------------~t~~~ll~a~~~~g~~~~a~~~~~~-----~~~~~~~~~~--~~ 376 (610)
+-..|...+.+ |+. .+...++.+-.+.++.....+.... .....++..+ -.
T Consensus 548 t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfe 627 (895)
T KOG2076|consen 548 TASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFE 627 (895)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHH
Confidence 44444332110 100 0001111111111111000000000 0000111111 13
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC----C-CCCCH---HHHHHHHHHHHhcCchhHHHHHHHHHhcC-----CCCCCcc
Q 037713 377 HYTCLLDLLSRSGHLDEAENLIKAM----P-FEPDE---PTWAALLSACKHHRNTEMGTRVANHLLSL-----KPEDPSS 443 (610)
Q Consensus 377 ~~~~li~~~~~~g~~~~A~~~~~~m----~-~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~~~ 443 (610)
.+.-++..+.+.|++++|+.+...+ - ..++. ..-...+.++...+++..|...++.++.. +|.-+..
T Consensus 628 l~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l 707 (895)
T KOG2076|consen 628 LFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNL 707 (895)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 4566788899999999999998877 1 12222 12334566678899999999999999865 5555556
Q ss_pred hHhHHHHhhhhcch
Q 037713 444 YILLSNVYASAAMW 457 (610)
Q Consensus 444 ~~~l~~~~~~~g~~ 457 (610)
|++..+...+.|+-
T Consensus 708 ~n~~~s~~~~~~q~ 721 (895)
T KOG2076|consen 708 WNLDFSYFSKYGQR 721 (895)
T ss_pred HHHHHHHHHHHHHH
Confidence 66555555555543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.4e-11 Score=116.02 Aligned_cols=386 Identities=13% Similarity=0.041 Sum_probs=257.3
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCC-hhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCC-hhHHHHHHHH
Q 037713 72 WASILTAYNQANLPQKTISIFSTMLALDKLQPD-HFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD-DVVKSSLVDM 149 (610)
Q Consensus 72 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~ 149 (610)
+-...+-|.++|++++|++.|.+.++ ..|| +..|...-.+|...|+++...+.-...++.. |+ +-.+..-..+
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~---l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A 192 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIE---LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASA 192 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHh---cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHH
Confidence 34445567889999999999999998 6788 6777777777889999999988888887754 44 4566667778
Q ss_pred HHhCCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCh------------------------
Q 037713 150 YAKCGLPNNARAVFDSIK---LKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL------------------------ 202 (610)
Q Consensus 150 ~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------------------------ 202 (610)
+-..|++++|+.=..-.- .-+-.+-..++.-..+.--..++.+-+..-..|.+
T Consensus 193 ~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~ 272 (606)
T KOG0547|consen 193 HEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNK 272 (606)
T ss_pred HHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCC
Confidence 888888888764211000 00000111111111111112222333321111110
Q ss_pred --hhHHHHHHHHHh--CC---ChHHHHHHHHHHHHcCCCCC-----CH------hHHHHHHHHHhccccHHHHHHHHHHH
Q 037713 203 --FLWTALVSGLVQ--SR---NEIDAFYSFIEMRREGVDIV-----DP------LVLSSIVGACANFAVLELGKQIHGLV 264 (610)
Q Consensus 203 --~~~~~li~~~~~--~g---~~~~A~~~~~~m~~~~~~~p-----~~------~t~~~ll~~~~~~~~~~~a~~~~~~~ 264 (610)
.+...+..++-. .+ .+.+|.+.+.+-.......+ |. .+.......+.-.|+.-.+.+-++.+
T Consensus 273 ~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~ 352 (606)
T KOG0547|consen 273 SDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAA 352 (606)
T ss_pred CccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHH
Confidence 111122221111 11 23344333333211110001 11 11111112233457788888888888
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 037713 265 IALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341 (610)
Q Consensus 265 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 341 (610)
++....+ ...|--+..+|....+.++..+.|+...+ .|..+|..-.+.+.-.+++++|..=|++.+..... +...
T Consensus 353 I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~ 430 (606)
T KOG0547|consen 353 IKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYA 430 (606)
T ss_pred HhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHH
Confidence 8875433 33366777889999999999999998864 46778888888888889999999999999875322 5677
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---------HHHHH
Q 037713 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD---------EPTWA 411 (610)
Q Consensus 342 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---------~~~~~ 411 (610)
|..+..+.-+.+.++++...|++.++ .++.-++.|+.....+...+++++|.+.|+.. .++|. +.+--
T Consensus 431 ~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~K 508 (606)
T KOG0547|consen 431 YIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHK 508 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhh
Confidence 77777778889999999999999988 46677889999999999999999999999887 44443 22222
Q ss_pred HHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHH
Q 037713 412 ALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLM 467 (610)
Q Consensus 412 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 467 (610)
.++-.- =.+++..|..+++++++++|....+|..|+.+-.+.|+.++|.++|+.-
T Consensus 509 a~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 509 ALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred hHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 233222 2389999999999999999999899999999999999999999999875
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.2e-11 Score=112.30 Aligned_cols=347 Identities=11% Similarity=0.063 Sum_probs=243.8
Q ss_pred CCCCchHHHHHHHhhcCCChHHHHHHHccCCC----CCcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHH
Q 037713 35 HQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ----RDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFAS 110 (610)
Q Consensus 35 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ 110 (610)
+-+..++..||...+|....+.|+.++++-.. -+..++|.+|.+-.- ....++..+|.... +.||..|||+
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqk-m~Pnl~TfNa 278 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQK-MTPNLFTFNA 278 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhh-cCCchHhHHH
Confidence 44677899999999999999999999998763 377788888865432 22368899999888 9999999999
Q ss_pred HHHHHhccCCcHH----HHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHH-HHHHHHhcC--------C----CChhh
Q 037713 111 LVKACGSLGATRL----GKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNN-ARAVFDSIK--------L----KNSVS 173 (610)
Q Consensus 111 ll~~~~~~~~~~~----a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~--------~----~~~~~ 173 (610)
++++.++.|+++. |.+++.+|.+.|+.|...+|..+|..+.+.++..+ |..++.++. + .|..-
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F 358 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF 358 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence 9999999998765 56788899999999999999999999999888754 444444432 1 25566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCC-----------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHH
Q 037713 174 WTAMLSAYARSGRKKDAMEIFEQAPVR-----------NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLS 242 (610)
Q Consensus 174 ~~~li~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~ 242 (610)
+.+.++.|....+.+-|.++-.-.... ...-|..+....++....+.-+.+|..|.-.-.- |+..+..
T Consensus 359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~-p~~~~m~ 437 (625)
T KOG4422|consen 359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYF-PHSQTMI 437 (625)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceec-CCchhHH
Confidence 778888888999999998876654422 1234667778888999999999999999877665 9999999
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhc-CChH
Q 037713 243 SIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQH-GQAE 321 (610)
Q Consensus 243 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~ 321 (610)
.++.+....+.++....++..++..|.........-++..+++.. +.|+...-..+-.+.++. -++.
T Consensus 438 ~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k------------~hp~tp~r~Ql~~~~ak~aad~~ 505 (625)
T KOG4422|consen 438 HLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK------------LHPLTPEREQLQVAFAKCAADIK 505 (625)
T ss_pred HHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC------------CCCCChHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988875443333333333333221 122222111111111110 0111
Q ss_pred HH-HHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHH---HHHHHHHhcCCHHHHHHH
Q 037713 322 ET-LALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYT---CLLDLLSRSGHLDEAENL 397 (610)
Q Consensus 322 ~A-~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~ 397 (610)
++ ...-.+|.+.. ......+.++-.+.+.|..++|.+++..+.+++.--|.....+ -+++.-.+......|...
T Consensus 506 e~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~ 583 (625)
T KOG4422|consen 506 EAYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEV 583 (625)
T ss_pred HHHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHH
Confidence 11 22223444443 3444566666678889999999999988866544444444444 455555667777777777
Q ss_pred HHhC
Q 037713 398 IKAM 401 (610)
Q Consensus 398 ~~~m 401 (610)
++-|
T Consensus 584 lQ~a 587 (625)
T KOG4422|consen 584 LQLA 587 (625)
T ss_pred HHHH
Confidence 7766
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.51 E-value=8.4e-11 Score=112.68 Aligned_cols=331 Identities=9% Similarity=0.017 Sum_probs=248.9
Q ss_pred CCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChh-hHHHHHHHHH
Q 037713 135 PFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLF-LWTALVSGLV 213 (610)
Q Consensus 135 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~ 213 (610)
+...|.+.+-...-.+-+.|..+.|...|......-+..|.+.+....-..+.+.+..+....+..+.. .=--+..++-
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~ 238 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQ 238 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHH
Confidence 445666666556666778888899999888887665666666666555556666666655555543221 1122345666
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCCHHH
Q 037713 214 QSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGY--ESCLFISNAIVDMYAKCSDIIA 291 (610)
Q Consensus 214 ~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~y~~~g~~~~ 291 (610)
...+.+++++-.+.....|+. .+...-+....+.-...++++|+.+|+++.+... -.|..+|+.++-.-..+.++.-
T Consensus 239 el~q~~e~~~k~e~l~~~gf~-~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~ 317 (559)
T KOG1155|consen 239 ELHQHEEALQKKERLSSVGFP-NSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSY 317 (559)
T ss_pred HHHHHHHHHHHHHHHHhccCC-ccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHH
Confidence 667888999888888888874 4444445555556678899999999999998731 1256677766533322222222
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC
Q 037713 292 AKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGI 371 (610)
Q Consensus 292 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 371 (610)
--...-.+.+--+.|...+.+-|+-.++.++|...|++..+.+.+ ....|+.+..-|....+...|.+-++.+++ -.
T Consensus 318 LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~ 394 (559)
T KOG1155|consen 318 LAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVD--IN 394 (559)
T ss_pred HHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cC
Confidence 122222333445667777888889999999999999999886433 456788888999999999999999999987 34
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHH
Q 037713 372 TPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSN 449 (610)
Q Consensus 372 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 449 (610)
+.|-..|-.|.++|.-.+...-|+-.|++. ..+| |...|.+|...|.+.++.++|+..|.+++..+..+..++..|++
T Consensus 395 p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~Lak 474 (559)
T KOG1155|consen 395 PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAK 474 (559)
T ss_pred chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 557799999999999999999999999998 6677 68899999999999999999999999999888777789999999
Q ss_pred HhhhhcchhHHHHHHHHHhh
Q 037713 450 VYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 450 ~~~~~g~~~~a~~~~~~m~~ 469 (610)
+|.+.++.++|...++...+
T Consensus 475 Lye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 475 LYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999887654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.3e-11 Score=120.13 Aligned_cols=247 Identities=14% Similarity=0.032 Sum_probs=137.1
Q ss_pred HhcCCHHHHHHHHhhCCCCC--hhhHH--HHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHH
Q 037713 182 ARSGRKKDAMEIFEQAPVRN--LFLWT--ALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG 257 (610)
Q Consensus 182 ~~~g~~~~A~~~~~~~~~~~--~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a 257 (610)
.+.|+.+.|...|.++.+.+ ..... .....+...|++++|...++++.+... -++.....+...+.+.|+++.+
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P--~~~~al~ll~~~~~~~gdw~~a 206 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAP--RHPEVLRLAEQAYIRTGAWSSL 206 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHhHHHH
Confidence 45555555555555543321 11111 123445555666666666655555442 3445555555555555666666
Q ss_pred HHHHHHHHHhCCCCch-------hHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHH
Q 037713 258 KQIHGLVIALGYESCL-------FISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALY 327 (610)
Q Consensus 258 ~~~~~~~~~~~~~~~~-------~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~ 327 (610)
..++..+.+.+..++. .++..++....+..+.+...++++.+++ .++.....+..++...|+.++|.+++
T Consensus 207 ~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L 286 (398)
T PRK10747 207 LDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQII 286 (398)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 6555555555433221 1222233333334445555666666553 35666666677777777777777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 037713 328 DEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD 406 (610)
Q Consensus 328 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 406 (610)
++..+. .||... .++.+....++.+++.+..+...+. .+-|...+.++...+.+.|++++|.+.|+.. ...|+
T Consensus 287 ~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~ 360 (398)
T PRK10747 287 LDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD 360 (398)
T ss_pred HHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 666653 334321 1233334456677777777666653 3344555666667777777777777777666 55666
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHhcC
Q 037713 407 EPTWAALLSACKHHRNTEMGTRVANHLLSL 436 (610)
Q Consensus 407 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 436 (610)
..++..+...+.+.|+.++|.+++++.+.+
T Consensus 361 ~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 361 AYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 666666666677777777777777666543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-10 Score=118.68 Aligned_cols=253 Identities=13% Similarity=0.022 Sum_probs=153.8
Q ss_pred HHHHhcCCHHHHHHHHhhCCC--C--ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccH
Q 037713 179 SAYARSGRKKDAMEIFEQAPV--R--NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVL 254 (610)
Q Consensus 179 ~~~~~~g~~~~A~~~~~~~~~--~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~ 254 (610)
..+.+.|+.+.|.+.+.+..+ | +....-.....+.+.|++++|.+.++.+.+..+ -++..+..+...+...|++
T Consensus 126 ~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P--~~~~~l~ll~~~~~~~~d~ 203 (409)
T TIGR00540 126 EAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAP--RHKEVLKLAEEAYIRSGAW 203 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHhhH
Confidence 334444555555555544321 1 112222335556666666666666666666652 3555666666666667777
Q ss_pred HHHHHHHHHHHHhCCCCchhH-------HHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHH
Q 037713 255 ELGKQIHGLVIALGYESCLFI-------SNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETL 324 (610)
Q Consensus 255 ~~a~~~~~~~~~~~~~~~~~~-------~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 324 (610)
+.+.+.+..+.+.+..+.... +..++..-......+...+.+...++ .+...+..+...+...|+.++|.
T Consensus 204 ~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~ 283 (409)
T TIGR00540 204 QALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQ 283 (409)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHH
Confidence 777776666666654332221 11112111222234455555666553 37788888888888899999999
Q ss_pred HHHHHHHHcCCCCCHHH---HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-
Q 037713 325 ALYDEMVSAGVKPNEVT---FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKA- 400 (610)
Q Consensus 325 ~l~~~m~~~g~~p~~~t---~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~- 400 (610)
+++++..+. .||... ...........++.+.+.+.++...+...-.|+.....++...+.+.|++++|.+.|+.
T Consensus 284 ~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a 361 (409)
T TIGR00540 284 EIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNV 361 (409)
T ss_pred HHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHh
Confidence 998888875 344332 11122223345677778888877766432222225666778888888888888888883
Q ss_pred -C-CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhc
Q 037713 401 -M-PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLS 435 (610)
Q Consensus 401 -m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 435 (610)
. ...|+...+..+...+.+.|+.++|.+++++.++
T Consensus 362 ~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 362 AACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 5678887777888888888888888888887653
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.4e-10 Score=110.46 Aligned_cols=418 Identities=11% Similarity=0.074 Sum_probs=263.6
Q ss_pred HHHHHhhcCCChHHHHHHHccCCC----CCcch-HHHHHHHHHcCCCchHHHHHHHHhHHCCCCCC--Chhh----HHHH
Q 037713 43 TLIDAYGKCDLVQYAHHLLEEMPQ----RDHVS-WASILTAYNQANLPQKTISIFSTMLALDKLQP--DHFV----FASL 111 (610)
Q Consensus 43 ~li~~~~~~g~~~~A~~~f~~m~~----~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p--d~~~----~~~l 111 (610)
.|.+-|.......+|+..++-+.+ ||.-. --.+-..+.+...+.+|+..|+-.+.. .| +..+ .+.+
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq---vpsink~~rikil~ni 282 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ---VPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh---ccccchhhHHHHHhhc
Confidence 344455555566666666665543 22211 112334556666777888877766653 23 2222 2223
Q ss_pred HHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCC----------------CChhhHH
Q 037713 112 VKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKL----------------KNSVSWT 175 (610)
Q Consensus 112 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----------------~~~~~~~ 175 (610)
.-.+.+.|.++.|..-|+...+. .|+..+.-.|+-++..-|+-++..+.|.+|.. |+....|
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 33356778888888888887765 46666655566677777888888888877751 1222222
Q ss_pred HH-----HHHHHhcCC--HHHHH----HHHhhCCCCChh---hH----------HHH--------HHHHHhCCChHHHHH
Q 037713 176 AM-----LSAYARSGR--KKDAM----EIFEQAPVRNLF---LW----------TAL--------VSGLVQSRNEIDAFY 223 (610)
Q Consensus 176 ~l-----i~~~~~~g~--~~~A~----~~~~~~~~~~~~---~~----------~~l--------i~~~~~~g~~~~A~~ 223 (610)
.. +.-.-+... -++++ ++..-+..++-. -| ..| ..-|.++|+++.|++
T Consensus 361 eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aie 440 (840)
T KOG2003|consen 361 EAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIE 440 (840)
T ss_pred HHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHH
Confidence 22 222222211 11221 111111222210 01 111 123788999999999
Q ss_pred HHHHHHHcCCCCCCHhH--HHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 037713 224 SFIEMRREGVDIVDPLV--LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR 301 (610)
Q Consensus 224 ~~~~m~~~~~~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~ 301 (610)
++.-..+..-+ .-... -..++.......++..|.++-..++... .-+....+.-.+.-...|++++|.+.+.+...
T Consensus 441 ilkv~~~kdnk-~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ 518 (840)
T KOG2003|consen 441 ILKVFEKKDNK-TASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALN 518 (840)
T ss_pred HHHHHHhccch-hhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHc
Confidence 99888765433 21111 1222333333446677777666555432 11222222222233457999999999999998
Q ss_pred CChhHHHHH---HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHH
Q 037713 302 KDVVSWTSI---IVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY 378 (610)
Q Consensus 302 ~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 378 (610)
.|...-.+| .-.+-..|+.++|++.|-++..- +.-+...+..+.+.|....+..+|++++..... -++.|+.+.
T Consensus 519 ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~il 595 (840)
T KOG2003|consen 519 NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAIL 595 (840)
T ss_pred CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHH
Confidence 776544443 33466789999999999887653 334677788888999999999999999987755 467788999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcc
Q 037713 379 TCLLDLLSRSGHLDEAENLIKA-MPFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAM 456 (610)
Q Consensus 379 ~~li~~~~~~g~~~~A~~~~~~-m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 456 (610)
+-|.+.|-+.|+-..|.+..-. ...-| +..+..=|...|....-.++++.+|+++--+.|+......+++..+.+.|+
T Consensus 596 skl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgn 675 (840)
T KOG2003|consen 596 SKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGN 675 (840)
T ss_pred HHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccc
Confidence 9999999999999999886543 33333 455554466668888889999999999998999766556677778889999
Q ss_pred hhHHHHHHHHHhhC
Q 037713 457 WQHVSKVRKLMSVM 470 (610)
Q Consensus 457 ~~~a~~~~~~m~~~ 470 (610)
+..|..+++.+..+
T Consensus 676 yqka~d~yk~~hrk 689 (840)
T KOG2003|consen 676 YQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988653
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.1e-11 Score=121.25 Aligned_cols=274 Identities=9% Similarity=0.052 Sum_probs=211.0
Q ss_pred cCCHHHHHHHHhhCCCC--Ch-hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHH--HHHHHHhccccHHHHH
Q 037713 184 SGRKKDAMEIFEQAPVR--NL-FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLS--SIVGACANFAVLELGK 258 (610)
Q Consensus 184 ~g~~~~A~~~~~~~~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~--~ll~~~~~~~~~~~a~ 258 (610)
.|+++.|++.....+.. ++ ..|-....+..+.|+++.|.+.|.++.+.. |+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~---~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELA---DNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CcchHHHHHHHHHHHHHCCCHHHHH
Confidence 58899999888876543 22 333333455588999999999999998765 5554333 3366788899999999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---h--------hHHHHHHHHHHhcCChHHHHHHH
Q 037713 259 QIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKD---V--------VSWTSIIVGTAQHGQAEETLALY 327 (610)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~--------~~~~~li~~~~~~g~~~~A~~l~ 327 (610)
..++.+.+.. +.+..+...+...|.+.|++++|.+++..+.+.. . .+|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999998886 5578889999999999999999999999988531 1 23444454444555666677777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 037713 328 DEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD 406 (610)
Q Consensus 328 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 406 (610)
+.+.+. .+.+......+..++...|+.++|...+++..+ .+|+.... ++.+....++.+++.+..++. ...|+
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 766443 345777888899999999999999999988876 34555322 233334569999999999888 45565
Q ss_pred -HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHh
Q 037713 407 -EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMS 468 (610)
Q Consensus 407 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 468 (610)
...+..+...|...+++++|.+.|+++++..|++ ..+..|+.++.+.|+.++|.++++.-.
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4557778888999999999999999999999975 678899999999999999999988653
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.7e-09 Score=102.71 Aligned_cols=440 Identities=12% Similarity=0.073 Sum_probs=317.9
Q ss_pred ccCChHHHHHHHHHHHHhCCCCCCchHHHHHHHhhcCCChHHHHHHHccCCC--CCc-chHHHHHHHHHcCCCchHHHHH
Q 037713 15 RHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ--RDH-VSWASILTAYNQANLPQKTISI 91 (610)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~-~~~~~li~~~~~~g~~~~A~~~ 91 (610)
..+++..|+.++++.+... ..+..+|-..+.+=.++..+..|+.+|++... |-+ ..|-.-+..=-.-|+...|.++
T Consensus 85 sq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 4567888999999998766 45777888888999999999999999987542 211 2255444444556899999999
Q ss_pred HHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCC--
Q 037713 92 FSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-- 169 (610)
Q Consensus 92 ~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-- 169 (610)
|+.... ..||...|.+.++.=.+-...+.|+.+++..+-. .|++..|--....=.++|....|..+|+...+.
T Consensus 164 ferW~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 164 FERWME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 998887 7899999999999988999999999999988754 589999988888999999999999999877632
Q ss_pred ----ChhhHHHHHHHHHhcCCHHHHHHHHhh----CCCCC-hhhHHHHHHHHHhCCC---hHHHHH-----HHHHHHHcC
Q 037713 170 ----NSVSWTAMLSAYARSGRKKDAMEIFEQ----APVRN-LFLWTALVSGLVQSRN---EIDAFY-----SFIEMRREG 232 (610)
Q Consensus 170 ----~~~~~~~li~~~~~~g~~~~A~~~~~~----~~~~~-~~~~~~li~~~~~~g~---~~~A~~-----~~~~m~~~~ 232 (610)
+...+.+...-=.++..++.|.-+|.- ++... ...|.....---+-|+ .++++- -|+.+++.+
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n 318 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN 318 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC
Confidence 233445555544567778888877753 33332 2334444433334454 344432 234455554
Q ss_pred CCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCch--hHHHHHHH--------HHHhcCCHHHHHHHHHhcCC-
Q 037713 233 VDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCL--FISNAIVD--------MYAKCSDIIAAKDIFGRMRR- 301 (610)
Q Consensus 233 ~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~--------~y~~~g~~~~A~~~~~~~~~- 301 (610)
|-|-.+|--.+..-...|+.+...++++.++..- +|-. ..|...|- .-....+.+.+.++|+...+
T Consensus 319 --p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l 395 (677)
T KOG1915|consen 319 --PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL 395 (677)
T ss_pred --CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3688888888888888999999999999998754 3321 12222211 11246788899999987764
Q ss_pred -C-ChhHHHH----HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCH
Q 037713 302 -K-DVVSWTS----IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSL 375 (610)
Q Consensus 302 -~-~~~~~~~----li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~ 375 (610)
| ...||.- ...--.++.+...|.+++...+ |..|-..+|...|..-.+.+.++....+++...+ --+-+.
T Consensus 396 IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c 471 (677)
T KOG1915|consen 396 IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENC 471 (677)
T ss_pred cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhh
Confidence 2 3334443 3344456788999999998776 6689999999999999999999999999999987 234456
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHh
Q 037713 376 QHYTCLLDLLSRSGHLDEAENLIKAMPFEP----DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVY 451 (610)
Q Consensus 376 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 451 (610)
.+|.-....=...|+.+.|..+|+-.-..| ....|.+.|.--...|.++.|..+++++++..+.. ..+...+.--
T Consensus 472 ~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~-kvWisFA~fe 550 (677)
T KOG1915|consen 472 YAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHV-KVWISFAKFE 550 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccc-hHHHhHHHHh
Confidence 888888888888999999999998873233 35667777777778999999999999999887754 3565555433
Q ss_pred h-----hhc-----------chhHHHHHHHHHh
Q 037713 452 A-----SAA-----------MWQHVSKVRKLMS 468 (610)
Q Consensus 452 ~-----~~g-----------~~~~a~~~~~~m~ 468 (610)
. +.| ....|.++|+...
T Consensus 551 ~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 551 ASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred ccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 3 233 4556777776653
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.5e-10 Score=107.23 Aligned_cols=322 Identities=12% Similarity=0.042 Sum_probs=164.2
Q ss_pred CCCCchHHHHHHHhhcCCChHHHHHHHccCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHH--HHH
Q 037713 35 HQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFA--SLV 112 (610)
Q Consensus 35 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~--~ll 112 (610)
.-|++.+-..--.+-+.|..+.|+..|......-+..|.+-+....-..+. +........ ...|...+. .+.
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~----e~~~~l~~~--l~~~~h~M~~~F~~ 234 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDI----EILSILVVG--LPSDMHWMKKFFLK 234 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchH----HHHHHHHhc--CcccchHHHHHHHH
Confidence 345444444444455667778888887766554344444433322111122 222222221 121222221 234
Q ss_pred HHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCC------ChhhHHHHHHHHHhcCC
Q 037713 113 KACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK------NSVSWTAMLSAYARSGR 186 (610)
Q Consensus 113 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~g~ 186 (610)
.++-...+.+++.+-.+.+...|++.+...-+....++-...++|.|+.+|+++... |..+|+..+-.--.+.+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 556666677888888888888888888777777777777888888888888888744 44555554433222111
Q ss_pred HH-HHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHH
Q 037713 187 KK-DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVI 265 (610)
Q Consensus 187 ~~-~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 265 (610)
+. -|..+++ +.+--+.|.-.+.+-|.-.++.++|...|++.++.+. .-...|+.+..-|....+...|.+-++.++
T Consensus 315 Ls~LA~~v~~-idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp--~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv 391 (559)
T KOG1155|consen 315 LSYLAQNVSN-IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP--KYLSAWTLMGHEYVEMKNTHAAIESYRRAV 391 (559)
T ss_pred HHHHHHHHHH-hccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc--chhHHHHHhhHHHHHhcccHHHHHHHHHHH
Confidence 11 1222222 1111233444444555555666666666666655542 233344444444555555555555555555
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 037713 266 ALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTF 342 (610)
Q Consensus 266 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 342 (610)
+.+ +.|-..|-.|.++|.-.+-..-|+-.|++..+ .|...|.+|...|.+.++.++|++.|+.....|-. +...+
T Consensus 392 di~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l 469 (559)
T KOG1155|consen 392 DIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSAL 469 (559)
T ss_pred hcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHH
Confidence 443 33444455555555555555555555544431 24455555555555555555555555555443322 33444
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHH
Q 037713 343 VGLIYACSHVGLVGKGRKLFKSMIE 367 (610)
Q Consensus 343 ~~ll~a~~~~g~~~~a~~~~~~~~~ 367 (610)
..|...+-+.++..+|.+.|+.-++
T Consensus 470 ~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5555555555555555555444433
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.2e-11 Score=124.00 Aligned_cols=190 Identities=13% Similarity=0.074 Sum_probs=92.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHh
Q 037713 275 ISNAIVDMYAKCSDIIAAKDIFGRMRRK---DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKP-NEVTFVGLIYACS 350 (610)
Q Consensus 275 ~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~ 350 (610)
+|.++.++|.-+++.+.|++.|++..+- ...+|+.+..-+.....+|.|...|+..+.. .| +-..|-.+...|.
T Consensus 423 sWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--~~rhYnAwYGlG~vy~ 500 (638)
T KOG1126|consen 423 SWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--DPRHYNAWYGLGTVYL 500 (638)
T ss_pred HHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--CchhhHHHHhhhhhee
Confidence 3334444444444444444444444321 2334444444444444455555555444321 11 1223333444555
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHH
Q 037713 351 HVGLVGKGRKLFKSMIEDYGITP-SLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGT 427 (610)
Q Consensus 351 ~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 427 (610)
+.++++.|.-.|+.+.+ +.| +.+...++...+-+.|+.|+|+++++++ ...| |+..-..-...+...+++++|+
T Consensus 501 Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal 577 (638)
T KOG1126|consen 501 KQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEAL 577 (638)
T ss_pred ccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHH
Confidence 55555555555555543 223 3344444555555566666666666555 2222 2222222333344555666666
Q ss_pred HHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhh
Q 037713 428 RVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 428 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 469 (610)
+.++++.++-|++...|..++.+|-+.|+.+.|..-+..+.+
T Consensus 578 ~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 578 QELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 666666666666666666666666666666666665555543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.6e-11 Score=123.03 Aligned_cols=243 Identities=13% Similarity=0.130 Sum_probs=181.3
Q ss_pred ChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCCHHH-HH
Q 037713 217 NEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALG--YESCLFISNAIVDMYAKCSDIIA-AK 293 (610)
Q Consensus 217 ~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~y~~~g~~~~-A~ 293 (610)
+..+|+..|......- . ........+..+|...+++++++.+|+.+.+.. ...+..+|.+.+--+-+.=.+.. |.
T Consensus 334 ~~~~A~~~~~klp~h~-~-nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH-Y-NTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHhhHHhc-C-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 4677888888744433 2 455777778888888888888888888887753 12356677766654433211111 22
Q ss_pred HHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC
Q 037713 294 DIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKP-NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGIT 372 (610)
Q Consensus 294 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 372 (610)
.+.+ +.+..+.+|.++...|.-+++.+.|++.|++..+. .| ...+|+.+..-+.....+|.|...|+....
T Consensus 412 ~Li~-~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~----- 483 (638)
T KOG1126|consen 412 DLID-TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG----- 483 (638)
T ss_pred HHHh-hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc-----
Confidence 2222 22346789999999999999999999999988874 45 678888888888888889999999887643
Q ss_pred CCHHHHHH---HHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhH
Q 037713 373 PSLQHYTC---LLDLLSRSGHLDEAENLIKAM-PFEPD-EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILL 447 (610)
Q Consensus 373 ~~~~~~~~---li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 447 (610)
.|+.+|++ |.-.|.|.++++.|+-.|+++ .+.|. .+....+...+.+.|+.|+|++++++++-++|.|+-.-...
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 45556655 455688999999999999888 77774 55566667778888999999999999999999998888888
Q ss_pred HHHhhhhcchhHHHHHHHHHhh
Q 037713 448 SNVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 448 ~~~~~~~g~~~~a~~~~~~m~~ 469 (610)
+.++...+++++|.+.++++++
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKE 585 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHH
Confidence 9999999999999999988875
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.45 E-value=9.3e-13 Score=127.97 Aligned_cols=162 Identities=10% Similarity=0.045 Sum_probs=68.8
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 037713 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281 (610)
Q Consensus 202 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 281 (610)
...+..++..+.+.++++++.++++......-.++++..|......+.+.|+.+.|...++.+++.. |.|..+.+.++.
T Consensus 110 ~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~ 188 (280)
T PF13429_consen 110 PRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAW 188 (280)
T ss_dssp --------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred cchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 3344445555555555555555555544322111444455555555555555555555555555543 223445555555
Q ss_pred HHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHH
Q 037713 282 MYAKCSDIIAAKDIFGRMR---RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKG 358 (610)
Q Consensus 282 ~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 358 (610)
.+...|+.+++.+++.... ..|...|..+..+|...|+.++|+.+|++..... +.|..+...+..++...|+.++|
T Consensus 189 ~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A 267 (280)
T PF13429_consen 189 LLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEA 267 (280)
T ss_dssp HHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT--------
T ss_pred HHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-ccccccccccccccccccccccc
Confidence 5555555555444444433 2344555566666666666666666666655531 22455555555666666666666
Q ss_pred HHHHHHh
Q 037713 359 RKLFKSM 365 (610)
Q Consensus 359 ~~~~~~~ 365 (610)
.++...+
T Consensus 268 ~~~~~~~ 274 (280)
T PF13429_consen 268 LRLRRQA 274 (280)
T ss_dssp -------
T ss_pred ccccccc
Confidence 6655544
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.5e-10 Score=110.51 Aligned_cols=444 Identities=13% Similarity=0.037 Sum_probs=300.7
Q ss_pred chhhHHHhhhhhhccCChHHHHHHHHHHHHhCCCCCCchHHHHHHHhhcCCChHHHHHHHc--cCCCCCcchHHHHHHHH
Q 037713 2 QISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLE--EMPQRDHVSWASILTAY 79 (610)
Q Consensus 2 ~~~~y~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~--~m~~~~~~~~~~li~~~ 79 (610)
+++.|..+++-+....+...|.-+-+.+...+ .|+...--+.++|.-.|..+.|..+.. .+.+.|..+.......+
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l 92 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCL 92 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 46677777777777777777777777776555 444455567788888888888888775 45577888888888999
Q ss_pred HcCCCchHHHHHHH----HhHHCC--------CCCCChhh----HHHHH-------HHHhccCCcHHHHHHHHHHHhcCC
Q 037713 80 NQANLPQKTISIFS----TMLALD--------KLQPDHFV----FASLV-------KACGSLGATRLGKQVHACFVLSPF 136 (610)
Q Consensus 80 ~~~g~~~~A~~~~~----~m~~~~--------~~~pd~~~----~~~ll-------~~~~~~~~~~~a~~~~~~~~~~g~ 136 (610)
.+..++++|+.++. .+..-. .+.+|..- -+.-. +.+....+.++|+..+.+.+..
T Consensus 93 ~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~-- 170 (611)
T KOG1173|consen 93 VKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA-- 170 (611)
T ss_pred HHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc--
Confidence 99999999998887 221100 01111111 00011 1223334556666666665543
Q ss_pred CCChhHHHHHHHHHHhC-CChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhh-------------CC----
Q 037713 137 CDDDVVKSSLVDMYAKC-GLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ-------------AP---- 198 (610)
Q Consensus 137 ~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-------------~~---- 198 (610)
|+..+.++...-... -..++-+.+|+... ..... ..+.+.-..+|+- ++
T Consensus 171 --D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~---~a~~~--------~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl 237 (611)
T KOG1173|consen 171 --DAKCFEAFEKLVSAHMLTAQEEFELLESLD---LAMLT--------KEDVERLEILYELKLCKNRNEESLTRNEDESL 237 (611)
T ss_pred --chhhHHHHHHHHHHHhcchhHHHHHHhccc---HHhhh--------hhHHHHHHHHHHhhhhhhccccccccCchhhh
Confidence 333333222211110 01112222333221 11100 0011111111210 00
Q ss_pred ---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhH
Q 037713 199 ---VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFI 275 (610)
Q Consensus 199 ---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 275 (610)
+.++...-.-..-+...+++.+.++++....+.. |+....+..=|.++...|+...-..+=..+++. .|....+
T Consensus 238 ~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d--pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~s 314 (611)
T KOG1173|consen 238 IGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD--PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALS 314 (611)
T ss_pred hhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC--CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcc
Confidence 1233444445556778899999999999998865 366666666677888888877766666666655 3667788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 037713 276 SNAIVDMYAKCSDIIAAKDIFGRMRRKD---VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHV 352 (610)
Q Consensus 276 ~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 352 (610)
|-++.-.|.-.|+..+|++.|.+...-| ...|-.....|+-.|..++|+..+...-+. ++-...-+.-+.--|.+.
T Consensus 315 W~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t 393 (611)
T KOG1173|consen 315 WFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRT 393 (611)
T ss_pred hhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHh
Confidence 9999999999999999999999876533 578999999999999999999999887653 111222233455568889
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC--C------CCC-CHHHHHHHHHHHHhcCch
Q 037713 353 GLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM--P------FEP-DEPTWAALLSACKHHRNT 423 (610)
Q Consensus 353 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~------~~p-~~~~~~~ll~~~~~~g~~ 423 (610)
++.+.|.++|.+... -.+.|+...+-+.-+....+.+.+|..+|+.. + -++ -..+++.|..+|++.+.+
T Consensus 394 ~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~ 471 (611)
T KOG1173|consen 394 NNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY 471 (611)
T ss_pred ccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence 999999999998864 23446677788877778889999999998876 1 112 356788899999999999
Q ss_pred hHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHh
Q 037713 424 EMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMS 468 (610)
Q Consensus 424 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 468 (610)
++|+..+++.+.+.|.++.+|..++-+|...|+++.|...+.+..
T Consensus 472 ~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 472 EEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999887654
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.3e-08 Score=101.80 Aligned_cols=419 Identities=11% Similarity=0.078 Sum_probs=333.4
Q ss_pred CCCCchHHHHHHHhhcCCChHHHHHHHccCCCC---CcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHH
Q 037713 35 HQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQR---DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASL 111 (610)
Q Consensus 35 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~l 111 (610)
+.++.+|...+ .....++|+.++.+..+- +...|. +|++-.-++.|..+++..++. ++-+...|.+.
T Consensus 377 P~sv~LWKaAV----elE~~~darilL~rAveccp~s~dLwl----AlarLetYenAkkvLNkaRe~--iptd~~IWita 446 (913)
T KOG0495|consen 377 PRSVRLWKAAV----ELEEPEDARILLERAVECCPQSMDLWL----ALARLETYENAKKVLNKAREI--IPTDREIWITA 446 (913)
T ss_pred CchHHHHHHHH----hccChHHHHHHHHHHHHhccchHHHHH----HHHHHHHHHHHHHHHHHHHhh--CCCChhHHHHH
Confidence 44555555544 456677799988876542 333344 566677889999999999885 66688888877
Q ss_pred HHHHhccCCcHHHHHHHHH----HHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCC------CChhhHHHHHHHH
Q 037713 112 VKACGSLGATRLGKQVHAC----FVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKL------KNSVSWTAMLSAY 181 (610)
Q Consensus 112 l~~~~~~~~~~~a~~~~~~----~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------~~~~~~~~li~~~ 181 (610)
...=-..|+.+....+..+ +...|+..+..-|-.=...+-+.|..-.+..+...... .-..+|+.-...|
T Consensus 447 a~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~ 526 (913)
T KOG0495|consen 447 AKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSC 526 (913)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHH
Confidence 7776788899888887765 44578888888888888888888998888888776652 2356899999999
Q ss_pred HhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHH
Q 037713 182 ARSGRKKDAMEIFEQAPV---RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK 258 (610)
Q Consensus 182 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 258 (610)
.+.+.++-|+.+|....+ .+...|...+..--..|..++...+|++....-. -....|.....-.-..|++..|+
T Consensus 527 ~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p--kae~lwlM~ake~w~agdv~~ar 604 (913)
T KOG0495|consen 527 EKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP--KAEILWLMYAKEKWKAGDVPAAR 604 (913)
T ss_pred HhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC--cchhHHHHHHHHHHhcCCcHHHH
Confidence 999999999999987653 3567888888777888999999999999998753 35556666666777789999999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 037713 259 QIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR--KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVK 336 (610)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 336 (610)
.++..+.+.. +.+..+|-+-+..-....+++.|+.+|.+... ++...|.--+..-.-.++.++|++++++-.+. -
T Consensus 605 ~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--f 681 (913)
T KOG0495|consen 605 VILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--F 681 (913)
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--C
Confidence 9999999886 34788899999999999999999999998874 67778877777777789999999999988875 5
Q ss_pred CC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHH
Q 037713 337 PN-EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM--PFEPDEPTWAAL 413 (610)
Q Consensus 337 p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l 413 (610)
|+ ...|..+...+-+.++++.|...|..-.+ .++..+..|-.|.+.=-+.|.+-+|..++++. .-.-+...|...
T Consensus 682 p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~ 759 (913)
T KOG0495|consen 682 PDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLES 759 (913)
T ss_pred CchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHH
Confidence 56 45677788899999999999999987765 45666789999999999999999999999998 333478899999
Q ss_pred HHHHHhcCchhHHHHHHHHHhcCCCCC------------------------------CcchHhHHHHhhhhcchhHHHHH
Q 037713 414 LSACKHHRNTEMGTRVANHLLSLKPED------------------------------PSSYILLSNVYASAAMWQHVSKV 463 (610)
Q Consensus 414 l~~~~~~g~~~~a~~~~~~~~~~~p~~------------------------------~~~~~~l~~~~~~~g~~~~a~~~ 463 (610)
+..-.+.|+.+.|..+..++++-.|++ +.....++.++....+++.|.+.
T Consensus 760 Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~W 839 (913)
T KOG0495|consen 760 IRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREW 839 (913)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998887655544 33444566677777778888888
Q ss_pred HHHHhhC
Q 037713 464 RKLMSVM 470 (610)
Q Consensus 464 ~~~m~~~ 470 (610)
|.+..+.
T Consensus 840 f~Ravk~ 846 (913)
T KOG0495|consen 840 FERAVKK 846 (913)
T ss_pred HHHHHcc
Confidence 8776543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.6e-10 Score=116.80 Aligned_cols=278 Identities=11% Similarity=-0.019 Sum_probs=180.1
Q ss_pred ccCCcHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHhCCChHHHHHHHHhcCC--CCh--hhHHHHHHHHHhcCCHHHHH
Q 037713 117 SLGATRLGKQVHACFVLSPFCDD-DVVKSSLVDMYAKCGLPNNARAVFDSIKL--KNS--VSWTAMLSAYARSGRKKDAM 191 (610)
Q Consensus 117 ~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~--~~~~~li~~~~~~g~~~~A~ 191 (610)
..|+++.|.+.+....+.. |+ ...+-....++.+.|+.+.|.+.|.+..+ |+. ...-+....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 3456666666665554432 22 22223334455556666666666655431 222 12223355556667777777
Q ss_pred HHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHH-HHHHHH---hccccHHHHHHHHHHH
Q 037713 192 EIFEQAPV---RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLS-SIVGAC---ANFAVLELGKQIHGLV 264 (610)
Q Consensus 192 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~-~ll~~~---~~~~~~~~a~~~~~~~ 264 (610)
..++.+.+ .+...+..+...+.+.|++++|.+++..+.+.++. ++..+. .-..+. ...+..+.+...+..+
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~--~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF--DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 77766543 25567778888888899999999999998888754 333221 111211 2222223333344444
Q ss_pred HHhCC---CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhH---HHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 037713 265 IALGY---ESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR--KDVVS---WTSIIVGTAQHGQAEETLALYDEMVSAGVK 336 (610)
Q Consensus 265 ~~~~~---~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 336 (610)
.+... +.+...+..+...+...|+.++|.+++++..+ ||... ...........++.+.+++.+++..+. .
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~ 329 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--V 329 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--C
Confidence 44322 24788889999999999999999999999875 43331 122222334457788899999887765 4
Q ss_pred CCH---HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037713 337 PNE---VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401 (610)
Q Consensus 337 p~~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 401 (610)
|+. ....++...|.+.|++++|.++|+.... +...|+...+..+...+.+.|+.++|.+++++.
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a-~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAA-CKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHH-hhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 544 4456788899999999999999995433 356799999999999999999999999999874
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.5e-08 Score=97.69 Aligned_cols=388 Identities=13% Similarity=0.112 Sum_probs=209.9
Q ss_pred CCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHH
Q 037713 82 ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161 (610)
Q Consensus 82 ~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 161 (610)
++++..|.++|+..+..+ ..+...|..-+..=.+...+..|+.+++.++..= |.-...|--.+.+=-..|++..|.+
T Consensus 86 q~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred HHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHHHHHHhcccHHHHH
Confidence 344445555555554421 1222223333333344445555555555554431 1112223333333344455555555
Q ss_pred HHHhcC--CCChhhHHHHHHHHHhcCCHHHHHHHHhhC--CCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHc-CCCCC
Q 037713 162 VFDSIK--LKNSVSWTAMLSAYARSGRKKDAMEIFEQA--PVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRRE-GVDIV 236 (610)
Q Consensus 162 ~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~p 236 (610)
+|++-. +|+...|++.|+.=.+...++.|..++++. ..|++.+|--...--.+.|...-|..+|....+. |-...
T Consensus 163 iferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~ 242 (677)
T KOG1915|consen 163 IFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEE 242 (677)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHH
Confidence 555433 445555555555555555555555555542 2445555555555555555555555555554432 10001
Q ss_pred CHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCCHHHHHHH--------HHhcCCC---C
Q 037713 237 DPLVLSSIVGACANFAVLELGKQIHGLVIALGYESC--LFISNAIVDMYAKCSDIIAAKDI--------FGRMRRK---D 303 (610)
Q Consensus 237 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~y~~~g~~~~A~~~--------~~~~~~~---~ 303 (610)
+...+.+...--.....++.|.-++..++..- +.+ ...|..+...--+.|+......+ ++.+... |
T Consensus 243 ~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~n 321 (677)
T KOG1915|consen 243 AEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYN 321 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCC
Confidence 22333333333344556666666666666542 222 34444444444445553333222 2222222 4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHH---HhccCCHHHHHHHHHHhHHhcCCCC
Q 037713 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE-------VTFVGLIYA---CSHVGLVGKGRKLFKSMIEDYGITP 373 (610)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~ll~a---~~~~g~~~~a~~~~~~~~~~~~~~~ 373 (610)
-.+|--.+..-...|+.+...++|++.+.. ++|-. ..|.-+=.+ -....+++.+.++++...+ -++.
T Consensus 322 YDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--lIPH 398 (677)
T KOG1915|consen 322 YDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--LIPH 398 (677)
T ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hcCc
Confidence 556666666666677888888888877654 44421 122222122 2245677777777777765 3444
Q ss_pred CHHHHHHHHHHHH----hcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHH
Q 037713 374 SLQHYTCLLDLLS----RSGHLDEAENLIKAM-PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLS 448 (610)
Q Consensus 374 ~~~~~~~li~~~~----~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 448 (610)
...|+.-+--+|+ ++.++..|.+++... |.-|-..+|...|..-.+.++++....++++.++.+|.+..++...+
T Consensus 399 kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kya 478 (677)
T KOG1915|consen 399 KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYA 478 (677)
T ss_pred ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHH
Confidence 4455555544443 667777787777666 77777777777777777777788888888888888887777777777
Q ss_pred HHhhhhcchhHHHHHHHHHhhCCCccCC
Q 037713 449 NVYASAAMWQHVSKVRKLMSVMEVKKEP 476 (610)
Q Consensus 449 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 476 (610)
..-...|+++.|..+++...+.+....|
T Consensus 479 ElE~~LgdtdRaRaifelAi~qp~ldmp 506 (677)
T KOG1915|consen 479 ELETSLGDTDRARAIFELAISQPALDMP 506 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHhcCcccccH
Confidence 7777778888888877777665543333
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.5e-09 Score=109.32 Aligned_cols=127 Identities=13% Similarity=0.017 Sum_probs=89.6
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCC-----CCCCHHHHHHHHHHHH
Q 037713 344 GLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMP-----FEPDEPTWAALLSACK 418 (610)
Q Consensus 344 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~p~~~~~~~ll~~~~ 418 (610)
.++..|++.-+..++...-+.... +-+ ...|..||+.+......++|..+.++.. +.-|...+..+.+...
T Consensus 464 ql~l~l~se~n~lK~l~~~ekye~-~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~ 539 (1088)
T KOG4318|consen 464 QLHLTLNSEYNKLKILCDEEKYED-LLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQ 539 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHH
Confidence 334444444444444444333322 122 2678999999999999999999998882 2345666788888889
Q ss_pred hcCchhHHHHHHHHHhcC---CCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhCCCcc
Q 037713 419 HHRNTEMGTRVANHLLSL---KPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKK 474 (610)
Q Consensus 419 ~~g~~~~a~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 474 (610)
+.+....+..+++++.+. .|.......-+.+..+..|..+...+.++.+...|+.-
T Consensus 540 r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 540 RLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 999999999999888752 23334455667777888899999999999998888865
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.3e-10 Score=107.85 Aligned_cols=197 Identities=12% Similarity=0.069 Sum_probs=164.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037713 272 CLFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYA 348 (610)
Q Consensus 272 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 348 (610)
....+..+...|.+.|++++|...|++..+ .+...+..+...+...|++++|.+.+++..+... .+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence 356677888899999999999999988753 3567888889999999999999999999887643 356677788889
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHH
Q 037713 349 CSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMG 426 (610)
Q Consensus 349 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a 426 (610)
+...|++++|.+.++...+..........+..+...+.+.|++++|...+++. ...| +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998774222334567788888999999999999999887 4344 456788888889999999999
Q ss_pred HHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhh
Q 037713 427 TRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 427 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 469 (610)
...+++..+..|.++..+..++.++...|++++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999988888888888899999999999999998887754
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.4e-09 Score=96.68 Aligned_cols=264 Identities=16% Similarity=0.154 Sum_probs=152.9
Q ss_pred CCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChh------HHHHHHHHHHhCCC
Q 037713 82 ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV------VKSSLVDMYAKCGL 155 (610)
Q Consensus 82 ~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~------~~~~li~~~~~~g~ 155 (610)
++++++|.++|-+|.+.. +-+..+-.+|.+.+.+.|..+.|+.+|+.+.++ ||.. ..-.|..-|...|-
T Consensus 48 s~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl 122 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGL 122 (389)
T ss_pred hcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhh
Confidence 467888888888887732 223344556667778888888888888888764 3321 22233333444444
Q ss_pred hHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 037713 156 PNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN---LFLWTALVSGLVQSRNEIDAFYSFIEMRREG 232 (610)
Q Consensus 156 ~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 232 (610)
+|.|+.+|..+.+.+ ......|+..|-+..+|++|+++-+++.+.+
T Consensus 123 -------------------------------~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~ 171 (389)
T COG2956 123 -------------------------------LDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLG 171 (389)
T ss_pred -------------------------------hhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcC
Confidence 444444444443322 2344456777888888888888887777766
Q ss_pred CCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHH
Q 037713 233 VDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK---DVVSWTS 309 (610)
Q Consensus 233 ~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~ 309 (610)
.+ +..+ -| ...|.-|...+....+++.|..++.+..+. .+..--.
T Consensus 172 ~q-~~~~----eI---------------------------AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~ 219 (389)
T COG2956 172 GQ-TYRV----EI---------------------------AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASII 219 (389)
T ss_pred Cc-cchh----HH---------------------------HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhh
Confidence 43 2111 00 112334444455556677777777766542 3344444
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcC
Q 037713 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSG 389 (610)
Q Consensus 310 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 389 (610)
+...+...|++..|++.++...+.+..--..+...|..+|.+.|+.+++...+..+.+. .+....-..|.+.-....
T Consensus 220 lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~ 296 (389)
T COG2956 220 LGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQE 296 (389)
T ss_pred hhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhh
Confidence 55667777888888888887777644333455666777777777777777777776653 233333333333333333
Q ss_pred CHHHHHH-HHHhCCCCCCHHHHHHHHHH
Q 037713 390 HLDEAEN-LIKAMPFEPDEPTWAALLSA 416 (610)
Q Consensus 390 ~~~~A~~-~~~~m~~~p~~~~~~~ll~~ 416 (610)
-.+.|.. +.++..-+|+...+..|+..
T Consensus 297 G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~ 324 (389)
T COG2956 297 GIDAAQAYLTRQLRRKPTMRGFHRLMDY 324 (389)
T ss_pred ChHHHHHHHHHHHhhCCcHHHHHHHHHh
Confidence 3333333 33444556666666555554
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=6e-09 Score=98.78 Aligned_cols=274 Identities=14% Similarity=0.052 Sum_probs=185.7
Q ss_pred CCChHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCC----ChhhHHHHHHHHHhCCChHHHHHHH
Q 037713 153 CGLPNNARAVFDSIKLK---NSVSWTAMLSAYARSGRKKDAMEIFEQAPVR----NLFLWTALVSGLVQSRNEIDAFYSF 225 (610)
Q Consensus 153 ~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~ 225 (610)
.|++..|++...+-.+. ....|..-+.+--+.|+.+.|-..+.+..++ +...+-+........|+++.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 34555555554443321 2233333334444555555555555554332 2334444555566666666666666
Q ss_pred HHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCch-------hHHHHHHHHHHhcCCHHHHHHHHHh
Q 037713 226 IEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCL-------FISNAIVDMYAKCSDIIAAKDIFGR 298 (610)
Q Consensus 226 ~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~y~~~g~~~~A~~~~~~ 298 (610)
.++.+.+. -++........+|.+.|++.....+...+.+.+.-.+. .+|+.+++-....+..+.-...++.
T Consensus 177 ~~ll~~~p--r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 177 DQLLEMTP--RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHhCc--CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 66666552 35555666666666666666666666666666654443 3566666665555566666667777
Q ss_pred cCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCH
Q 037713 299 MRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSL 375 (610)
Q Consensus 299 ~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~ 375 (610)
.+. .++..-.+++.-+.+.|+.++|.++.++-.+.+..|+. ..+-.+.+.++.+.-.+..+...+.++..|
T Consensus 255 ~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p-- 328 (400)
T COG3071 255 QPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP-- 328 (400)
T ss_pred ccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCCh--
Confidence 763 46777778888889999999999999998888777763 333467788888888888888877655555
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHh
Q 037713 376 QHYTCLLDLLSRSGHLDEAENLIKAM-PFEPDEPTWAALLSACKHHRNTEMGTRVANHLL 434 (610)
Q Consensus 376 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 434 (610)
..+.+|...|.+.+.+.+|...|+.. +..|+..+|+-+..++.+.|+.++|.++.++.+
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 67888999999999999999999877 788999999999999999999999999988876
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.9e-12 Score=86.01 Aligned_cols=50 Identities=36% Similarity=0.612 Sum_probs=46.5
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 037713 302 KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSH 351 (610)
Q Consensus 302 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 351 (610)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68899999999999999999999999999999999999999999999875
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.7e-09 Score=111.53 Aligned_cols=342 Identities=13% Similarity=0.103 Sum_probs=186.2
Q ss_pred HHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCC
Q 037713 90 SIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK 169 (610)
Q Consensus 90 ~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 169 (610)
.++-.|...| +.|+.+||.+++.-|+..|+.+.|- +|..|.-..++....+++.++......++.+.+. +|
T Consensus 11 nfla~~e~~g-i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep 81 (1088)
T KOG4318|consen 11 NFLALHEISG-ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EP 81 (1088)
T ss_pred hHHHHHHHhc-CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CC
Confidence 4556677777 8888888888888888888888888 8888887778888888888888888888877655 67
Q ss_pred ChhhHHHHHHHHHhcCCHHH---HHHHHhhCCC---C-------------------ChhhHHHHHHHHHhCCChHHHHHH
Q 037713 170 NSVSWTAMLSAYARSGRKKD---AMEIFEQAPV---R-------------------NLFLWTALVSGLVQSRNEIDAFYS 224 (610)
Q Consensus 170 ~~~~~~~li~~~~~~g~~~~---A~~~~~~~~~---~-------------------~~~~~~~li~~~~~~g~~~~A~~~ 224 (610)
...+|+.|..+|...|++.. .++.+..+.. + ....-...+.-.+-.|.++.++++
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred chhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888888888654 2221111110 0 001112233334444555555555
Q ss_pred HHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--
Q 037713 225 FIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK-- 302 (610)
Q Consensus 225 ~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-- 302 (610)
+..+....-. .+.. .++.-+.... .-.+++........-.++..++.++++.-.-.|+.+.|..++.+|.++
T Consensus 162 l~~~Pvsa~~--~p~~--vfLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gf 235 (1088)
T KOG4318|consen 162 LAKVPVSAWN--APFQ--VFLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGF 235 (1088)
T ss_pred HhhCCccccc--chHH--HHHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCC
Confidence 5444322110 1111 1233332222 222233333222222467777777777777777777777777777653
Q ss_pred --ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHH
Q 037713 303 --DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380 (610)
Q Consensus 303 --~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 380 (610)
+..-|..++-+ .+....+..+++-|.+.|+.|+..|+..-+-.+...|....+....+.- +|+ +...+..
T Consensus 236 pir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~---hg~--tAavrsa 307 (1088)
T KOG4318|consen 236 PIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLA---HGF--TAAVRSA 307 (1088)
T ss_pred Ccccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchh---hhh--hHHHHHH
Confidence 22223333333 5666666777777777777777777776666666644422222211110 010 1222333
Q ss_pred HHHHHHhcCCHHHHH-----HHHHhC---CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHh----cCCCCCCcchHhHH
Q 037713 381 LLDLLSRSGHLDEAE-----NLIKAM---PFEPDEPTWAALLSACKHHRNTEMGTRVANHLL----SLKPEDPSSYILLS 448 (610)
Q Consensus 381 li~~~~~~g~~~~A~-----~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~----~~~p~~~~~~~~l~ 448 (610)
+..+.....+++.-. ..+++- ++.-...+|. +..-...+|.-++.+++...+. ++.|++...|..+.
T Consensus 308 a~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws-~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~l 386 (1088)
T KOG4318|consen 308 ACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWS-MCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALL 386 (1088)
T ss_pred HhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHH-HHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHH
Confidence 332211111221111 111111 2222223343 2233444788888888877765 34566666777666
Q ss_pred HHhhhhc
Q 037713 449 NVYASAA 455 (610)
Q Consensus 449 ~~~~~~g 455 (610)
.-|.+.-
T Consensus 387 rqyFrr~ 393 (1088)
T KOG4318|consen 387 RQYFRRI 393 (1088)
T ss_pred HHHHHHH
Confidence 6665443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.1e-11 Score=84.61 Aligned_cols=50 Identities=18% Similarity=0.464 Sum_probs=45.4
Q ss_pred CCcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhc
Q 037713 67 RDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGS 117 (610)
Q Consensus 67 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~ 117 (610)
||+++||++|.+|++.|++++|+++|++|.+.| ++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g-~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRG-IKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHcC
Confidence 788999999999999999999999999999998 99999999999998864
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.3e-09 Score=112.89 Aligned_cols=261 Identities=10% Similarity=-0.041 Sum_probs=187.6
Q ss_pred ChhhHHHHHHHHHh-----CCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHh---------ccccHHHHHHHHHHHHH
Q 037713 201 NLFLWTALVSGLVQ-----SRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA---------NFAVLELGKQIHGLVIA 266 (610)
Q Consensus 201 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~---------~~~~~~~a~~~~~~~~~ 266 (610)
+...|...+.+-.. .+..++|++.|++..+... .+...+..+..++. ..+++++|...++.+.+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP--~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSP--NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 45556666665322 1346799999999988762 34555555554443 23457899999999988
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 037713 267 LGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR--K-DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFV 343 (610)
Q Consensus 267 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 343 (610)
.. +.+...+..+...+...|++++|...|++..+ | +...|..+...+...|++++|+..+++..+.... +...+.
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~ 410 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGI 410 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHH
Confidence 75 45677888899999999999999999999764 3 4678888999999999999999999999886433 222333
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHH-HHHHHHHhc
Q 037713 344 GLIYACSHVGLVGKGRKLFKSMIEDYGITP-SLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPDEPTWA-ALLSACKHH 420 (610)
Q Consensus 344 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~-~ll~~~~~~ 420 (610)
.++..+...|++++|...++++.+. .+| +...+..+...|...|++++|.+.++++ +..|+..... .+...+...
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhcc
Confidence 3444566789999999999998763 234 4556778888999999999999999988 5556654444 444456766
Q ss_pred CchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhC
Q 037713 421 RNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 421 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 470 (610)
| +.|...++++++..-..+..+..+...|+-.|+-+.+... +.+.+.
T Consensus 489 g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 489 S--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred H--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 6 4788888887754322223333477778888888777776 666544
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.1e-08 Score=94.59 Aligned_cols=219 Identities=12% Similarity=0.045 Sum_probs=173.1
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 037713 211 GLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDII 290 (610)
Q Consensus 211 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 290 (610)
-+.-.|+...|.+-|+........ +...|.-+...|....+.++..+.|..+.+.. +.++.+|..-..++.-.++++
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~--~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPA--FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcc--cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHH
Confidence 355678999999999999987754 22237777888999999999999999998876 446667777788888889999
Q ss_pred HHHHHHHhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 037713 291 AAKDIFGRMRRK---DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE 367 (610)
Q Consensus 291 ~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 367 (610)
+|..=|++...- ++..|-.+..+.-+.+++++++..|++.++. ++--...|+.....+...+++++|.+.|+..++
T Consensus 412 ~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 412 EAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 999999988753 5566777777777889999999999999886 444577888889999999999999999999876
Q ss_pred hcCCCCC---------HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhcC
Q 037713 368 DYGITPS---------LQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD-EPTWAALLSACKHHRNTEMGTRVANHLLSL 436 (610)
Q Consensus 368 ~~~~~~~---------~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 436 (610)
+.|+ +.+.-.++..-. .+++..|.+++++. .+.|. ...+.+|...-.+.|+.++|+++|++...+
T Consensus 491 ---LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 491 ---LEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred ---hccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3333 222223333223 48999999999988 66664 567888888899999999999999988755
Q ss_pred C
Q 037713 437 K 437 (610)
Q Consensus 437 ~ 437 (610)
-
T Consensus 567 A 567 (606)
T KOG0547|consen 567 A 567 (606)
T ss_pred H
Confidence 3
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.5e-09 Score=104.39 Aligned_cols=231 Identities=14% Similarity=0.187 Sum_probs=170.4
Q ss_pred HhHHHHHHHHHhccccHHHHHHHHHHHHHh-----C-CCCch-hHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C-
Q 037713 238 PLVLSSIVGACANFAVLELGKQIHGLVIAL-----G-YESCL-FISNAIVDMYAKCSDIIAAKDIFGRMRR-------K- 302 (610)
Q Consensus 238 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~- 302 (610)
..|...+...|...|+++.|...++..++. | ..|.+ ...+.+...|...+++++|..+|+++.. +
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345566777888888888888888777665 2 12222 2334577788888998888888887753 1
Q ss_pred ---ChhHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCC-CCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcC--
Q 037713 303 ---DVVSWTSIIVGTAQHGQAEETLALYDEMVS-----AGV-KPNE-VTFVGLIYACSHVGLVGKGRKLFKSMIEDYG-- 370 (610)
Q Consensus 303 ---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~-~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-- 370 (610)
-..+++.|..+|...|++++|..++++..+ .|. .|.. .-++.+...|...+.+++|..+++...+.+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 235677788889999999888888877543 122 2222 2356677789999999999999988776543
Q ss_pred CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhc-
Q 037713 371 ITPS----LQHYTCLLDLLSRSGHLDEAENLIKAM---------PFEPD-EPTWAALLSACKHHRNTEMGTRVANHLLS- 435 (610)
Q Consensus 371 ~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~- 435 (610)
..++ ..+|+.|...|...|++++|++++++. +..+. ...++.|...|.+.+++++|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 378999999999999999999999887 11222 45677888889999999999999987653
Q ss_pred ---CCCC---CCcchHhHHHHhhhhcchhHHHHHHHHHh
Q 037713 436 ---LKPE---DPSSYILLSNVYASAAMWQHVSKVRKLMS 468 (610)
Q Consensus 436 ---~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 468 (610)
.+|+ ...+|..|+.+|.+.|++++|.++.+...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3444 34578899999999999999999988764
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.8e-08 Score=94.28 Aligned_cols=273 Identities=11% Similarity=0.017 Sum_probs=156.4
Q ss_pred CCChHHHHHHHccCCC---CCcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHH
Q 037713 51 CDLVQYAHHLLEEMPQ---RDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQV 127 (610)
Q Consensus 51 ~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~ 127 (610)
.|++..|+++..+-.+ ..+..|..-..+--+.|+.+.|-..+.+.-+.. -.++...+.+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~-~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA-GDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccC-CCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 3777777777765432 233344444455556677777777777776632 134444455555566677777777777
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCC-----------hhhHHHHHHHHHhcCCHHHHHHHHhh
Q 037713 128 HACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKN-----------SVSWTAMLSAYARSGRKKDAMEIFEQ 196 (610)
Q Consensus 128 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~ 196 (610)
...+.+.+ +.+..+.......|.+.|++.....++..+.+.. ..+|+.+++-....+..+.-...+++
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 77777766 5566777777777777777777777777776432 23555555555555555554555555
Q ss_pred CCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCch
Q 037713 197 APVR---NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCL 273 (610)
Q Consensus 197 ~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 273 (610)
.+.. ++..-.+++.-+.+.|+.++|.++..+..+.+-. |. ...+-.+.+.++.+.-.+..+...+.- +.++
T Consensus 255 ~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D-~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p 328 (400)
T COG3071 255 QPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWD-PR----LCRLIPRLRPGDPEPLIKAAEKWLKQH-PEDP 328 (400)
T ss_pred ccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccC-hh----HHHHHhhcCCCCchHHHHHHHHHHHhC-CCCh
Confidence 5522 4555556666666777777777776666666533 32 222223344444444444444433321 2223
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcC--CCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 037713 274 FISNAIVDMYAKCSDIIAAKDIFGRMR--RKDVVSWTSIIVGTAQHGQAEETLALYDEMV 331 (610)
Q Consensus 274 ~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 331 (610)
..+.+|...|.+.+.+.+|...|+... +++..+|+-+..+|.+.|+..+|.+.+++..
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 455555555555555555555555443 2455555555555555555555555555543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.6e-07 Score=89.63 Aligned_cols=439 Identities=11% Similarity=0.094 Sum_probs=267.3
Q ss_pred hHHHhhhhhhccCChHHHHHHHHHHHHhCCCCCCchHHHHHHHhhcCCChHHHHHHHccCCCCCcchHHHH----HHHHH
Q 037713 5 HYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASI----LTAYN 80 (610)
Q Consensus 5 ~y~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~l----i~~~~ 80 (610)
+..+=|+-....+++++|.+....++..+ +.+......=+-+..+.+++++|+++.+.-..- .+++.. ...+.
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHH
Confidence 34444566677788999999999998877 335555555555678889999999877654421 122222 33445
Q ss_pred cCCCchHHHHHHHHhHHCCCCCC-ChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhCCChHH
Q 037713 81 QANLPQKTISIFSTMLALDKLQP-DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCD-DDVVKSSLVDMYAKCGLPNN 158 (610)
Q Consensus 81 ~~g~~~~A~~~~~~m~~~~~~~p-d~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~ 158 (610)
+.+..++|+..+.- ..+ |..+...-...|.+.+++++|..+++.+.+++.+. |...-..++.+ +..-.
T Consensus 91 rlnk~Dealk~~~~------~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~----~a~l~ 160 (652)
T KOG2376|consen 91 RLNKLDEALKTLKG------LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV----AAALQ 160 (652)
T ss_pred HcccHHHHHHHHhc------ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH----HHhhh
Confidence 78999999998882 333 33355555566889999999999999999887432 11122222211 11112
Q ss_pred HHHHHHhcCCCChhhHHHH---HHHHHhcCCHHHHHHHHhhC--------CCCC-----hh-----hHHHHHHHHHhCCC
Q 037713 159 ARAVFDSIKLKNSVSWTAM---LSAYARSGRKKDAMEIFEQA--------PVRN-----LF-----LWTALVSGLVQSRN 217 (610)
Q Consensus 159 A~~~~~~m~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~~--------~~~~-----~~-----~~~~li~~~~~~g~ 217 (610)
+. +.+..+.....+|..+ ...+...|++.+|+++++.. ...| .. .---|...+...|+
T Consensus 161 ~~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 161 VQ-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred HH-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 22 4555554444444443 34567889999999999876 1111 11 12234456777899
Q ss_pred hHHHHHHHHHHHHcCCCCCCHhHHHHHHH---HHhccccHHH--HHHHHH-----------HHHHhCCCCchhHHHHHHH
Q 037713 218 EIDAFYSFIEMRREGVDIVDPLVLSSIVG---ACANFAVLEL--GKQIHG-----------LVIALGYESCLFISNAIVD 281 (610)
Q Consensus 218 ~~~A~~~~~~m~~~~~~~p~~~t~~~ll~---~~~~~~~~~~--a~~~~~-----------~~~~~~~~~~~~~~~~li~ 281 (610)
.++|..+|....+... +|........+ +...-.++-. ....++ ......-......-+.++.
T Consensus 240 t~ea~~iy~~~i~~~~--~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~ 317 (652)
T KOG2376|consen 240 TAEASSIYVDIIKRNP--ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLA 317 (652)
T ss_pred hHHHHHHHHHHHHhcC--CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998874 55533332221 2221111111 000110 0000000111222345555
Q ss_pred HHHhcCCHHHHHHHHHhcCCCC-hhHHHHHHHHHH--hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHH
Q 037713 282 MYAKCSDIIAAKDIFGRMRRKD-VVSWTSIIVGTA--QHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKG 358 (610)
Q Consensus 282 ~y~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~--~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 358 (610)
+|. +..+.+.++-...+... ...+.+++.... +...+..|.+++...-+....-........+......|+++.|
T Consensus 318 l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A 395 (652)
T KOG2376|consen 318 LFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVA 395 (652)
T ss_pred HHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHH
Confidence 554 55667777777776532 344555554432 2335778888887776653222344555666777889999999
Q ss_pred HHHHH--------HhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHhcC
Q 037713 359 RKLFK--------SMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM--------PFEPD-EPTWAALLSACKHHR 421 (610)
Q Consensus 359 ~~~~~--------~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~~~ll~~~~~~g 421 (610)
.+++. .+.+ .+.. +.+...++.+|.+.++-+.|..++.+. .-.+. ..+|.-+..--.++|
T Consensus 396 ~~il~~~~~~~~ss~~~-~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G 472 (652)
T KOG2376|consen 396 LEILSLFLESWKSSILE-AKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHG 472 (652)
T ss_pred HHHHHHHhhhhhhhhhh-hccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcC
Confidence 99998 4433 2333 455667888899988877777777665 11221 222333333345679
Q ss_pred chhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHH
Q 037713 422 NTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRK 465 (610)
Q Consensus 422 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 465 (610)
+.++|...++++.+.+|++......++-+|++.. .+.|..+-+
T Consensus 473 ~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l~k 515 (652)
T KOG2376|consen 473 NEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESLSK 515 (652)
T ss_pred chHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHHhh
Confidence 9999999999999999999999999999998763 455655433
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.6e-07 Score=89.83 Aligned_cols=450 Identities=14% Similarity=0.169 Sum_probs=248.1
Q ss_pred ccCChHHHHHHHHHHHHh-CCCCCCchHHHHHHHhhcCCChHHHHHHHccCCCCCcchHHHHHHHHHcCCCchHHHHHHH
Q 037713 15 RHQIALTVKTLHAQIIKL-GLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFS 93 (610)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 93 (610)
..+++-.-+..+...+.. .+..+..+|...+......|-++-+.+++++-.+-++.+-+--|..++..+++++|-+.+.
T Consensus 114 ~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la 193 (835)
T KOG2047|consen 114 KQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLA 193 (835)
T ss_pred hcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHH
Confidence 344455555555544432 3333445566666666666666666666666555555555566666666666666666665
Q ss_pred HhHHCCC-----CCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCC--CCC--hhHHHHHHHHHHhCCChHHHHHHHH
Q 037713 94 TMLALDK-----LQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPF--CDD--DVVKSSLVDMYAKCGLPNNARAVFD 164 (610)
Q Consensus 94 ~m~~~~~-----~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~--~~~~~~li~~~~~~g~~~~A~~~~~ 164 (610)
..+.... -+.+...|.-+-...++..+.-....+= .+++.|+ -+| ...|++|.+-|.+.|.++.|..+|+
T Consensus 194 ~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvd-aiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvye 272 (835)
T KOG2047|consen 194 TVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVD-AIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYE 272 (835)
T ss_pred HhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHH-HHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 5433210 1223333444444433333222222111 1222222 223 3578899999999999999999988
Q ss_pred hcCCC--ChhhHHHHHHHHHhc----------------C------CHHHHHHHHhhCCCC---------------ChhhH
Q 037713 165 SIKLK--NSVSWTAMLSAYARS----------------G------RKKDAMEIFEQAPVR---------------NLFLW 205 (610)
Q Consensus 165 ~m~~~--~~~~~~~li~~~~~~----------------g------~~~~A~~~~~~~~~~---------------~~~~~ 205 (610)
+.... .+.-++.+.+.|++. | +++-...-|+.+..+ ++..|
T Consensus 273 eai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW 352 (835)
T KOG2047|consen 273 EAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEW 352 (835)
T ss_pred HHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHH
Confidence 76543 233333444444221 1 122222333332211 22333
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcC-CC-C--CCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCc---hhHHHH
Q 037713 206 TALVSGLVQSRNEIDAFYSFIEMRREG-VD-I--VDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESC---LFISNA 278 (610)
Q Consensus 206 ~~li~~~~~~g~~~~A~~~~~~m~~~~-~~-~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ 278 (610)
..-+. ...|++.+-...|.+..+.= ++ . .-...|..+.+.|-..|+++.|+.+++...+..++.- ..+|..
T Consensus 353 ~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~ 430 (835)
T KOG2047|consen 353 HKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCA 430 (835)
T ss_pred Hhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHH
Confidence 33322 33566777777777776531 00 0 1234577777888888888888888888877655433 466777
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC---------------------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--
Q 037713 279 IVDMYAKCSDIIAAKDIFGRMRR---------------------KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGV-- 335 (610)
Q Consensus 279 li~~y~~~g~~~~A~~~~~~~~~---------------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-- 335 (610)
-.++-.+..+++.|+++...... ++...|...++.--..|-++....+|+++.+..+
T Consensus 431 waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaT 510 (835)
T KOG2047|consen 431 WAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIAT 510 (835)
T ss_pred HHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC
Confidence 77777788888888887766531 1233455555544445555555555555544332
Q ss_pred --------------------------------CCCH-HHHHHHHHHHh---ccCCHHHHHHHHHHhHHhcCCCCCH--HH
Q 037713 336 --------------------------------KPNE-VTFVGLIYACS---HVGLVGKGRKLFKSMIEDYGITPSL--QH 377 (610)
Q Consensus 336 --------------------------------~p~~-~t~~~ll~a~~---~~g~~~~a~~~~~~~~~~~~~~~~~--~~ 377 (610)
.|+. ..|+..+.-+. ....++.|..+|++..+ |.+|.. ..
T Consensus 511 Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~--~Cpp~~aKti 588 (835)
T KOG2047|consen 511 PQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD--GCPPEHAKTI 588 (835)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--cCCHHHHHHH
Confidence 2332 12333222222 23467888888888877 666543 22
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCc--chHhHHHHh
Q 037713 378 YTCLLDLLSRSGHLDEAENLIKAM--PFEPD--EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS--SYILLSNVY 451 (610)
Q Consensus 378 ~~~li~~~~~~g~~~~A~~~~~~m--~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~--~~~~l~~~~ 451 (610)
|-.....=-+.|....|+.++++. ++++. ...|+..|.--...=-+..-..+|+++++.-|++-. ...-.+++-
T Consensus 589 yLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlE 668 (835)
T KOG2047|consen 589 YLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLE 668 (835)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHh
Confidence 333333334567778888888887 34443 345666665544433455667788888877775422 233456667
Q ss_pred hhhcchhHHHHHHHHHhh
Q 037713 452 ASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 452 ~~~g~~~~a~~~~~~m~~ 469 (610)
.+.|..+.|..++..-.+
T Consensus 669 tklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 669 TKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred hhhhhHHHHHHHHHhhhh
Confidence 788999999998876544
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.9e-08 Score=91.42 Aligned_cols=246 Identities=12% Similarity=0.111 Sum_probs=185.1
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhcCCH
Q 037713 213 VQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESC---LFISNAIVDMYAKCSDI 289 (610)
Q Consensus 213 ~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~y~~~g~~ 289 (610)
.-++++++|.++|-+|.+... -...+-.++.+.+.+.|..+.|..+|..+.++.--+. ....-.|..-|...|-+
T Consensus 46 LLs~Q~dKAvdlF~e~l~~d~--~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQEDP--ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred HhhcCcchHHHHHHHHHhcCc--hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhh
Confidence 345788999999999988552 3555667788889999999999999998887632111 23455677888999999
Q ss_pred HHHHHHHHhcCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhccCCHHHHHHHH
Q 037713 290 IAAKDIFGRMRRKD---VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE----VTFVGLIYACSHVGLVGKGRKLF 362 (610)
Q Consensus 290 ~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~ 362 (610)
|.|+.+|..+.+.+ ..+...|+..|-...+|++|++.-+++...|-.+.. ..|.-|...+....+++.|..++
T Consensus 124 DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 124 DRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred hHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 99999999998743 456677899999999999999999999887766553 34566667777788999999999
Q ss_pred HHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCC
Q 037713 363 KSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD--EPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439 (610)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 439 (610)
.+..+. -+..+..--.+.+.+...|+++.|.+.++.. .-.|+ ..+...|..+|...|+.++++..+.++.+..+.
T Consensus 204 ~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 204 KKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 888763 2233444456778889999999999999888 44455 456778889999999999999999999988775
Q ss_pred CCcchHhHHHHhhhhcchhHHHHH
Q 037713 440 DPSSYILLSNVYASAAMWQHVSKV 463 (610)
Q Consensus 440 ~~~~~~~l~~~~~~~g~~~~a~~~ 463 (610)
. ..-..+...-....-.+.|...
T Consensus 282 ~-~~~l~l~~lie~~~G~~~Aq~~ 304 (389)
T COG2956 282 A-DAELMLADLIELQEGIDAAQAY 304 (389)
T ss_pred c-cHHHHHHHHHHHhhChHHHHHH
Confidence 3 4555555555444444455444
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.6e-08 Score=95.28 Aligned_cols=198 Identities=11% Similarity=0.039 Sum_probs=102.4
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 037713 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281 (610)
Q Consensus 202 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 281 (610)
...+..+...+...|++++|.+.+++..+.. |.+...+..+...+...|+++.|...++...+.. +.+...+..+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD--PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 4567777778888888888888888777654 2345555556666666666666666666665543 223334444445
Q ss_pred HHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHH
Q 037713 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKP-NEVTFVGLIYACSHVGLVGKGRK 360 (610)
Q Consensus 282 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~ 360 (610)
.|...|++++|.+.|++ .......| ....+..+..++...|++++|..
T Consensus 108 ~~~~~g~~~~A~~~~~~-------------------------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 156 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQ-------------------------------AIEDPLYPQPARSLENAGLCALKAGDFDKAEK 156 (234)
T ss_pred HHHHcccHHHHHHHHHH-------------------------------HHhccccccchHHHHHHHHHHHHcCCHHHHHH
Confidence 55555555555555544 44321111 12233334444455555555555
Q ss_pred HHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCchhHHHHHHHHHhc
Q 037713 361 LFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFE-PDEPTWAALLSACKHHRNTEMGTRVANHLLS 435 (610)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 435 (610)
.+.+..+. .+.+...+..+...+...|++++|.+.+++. ... ++...+..+...+...|+.+.|..+.+.+.+
T Consensus 157 ~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 157 YLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 55554432 1222344445555555555555555555544 111 2233333444445555555555555544443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.1e-07 Score=93.96 Aligned_cols=271 Identities=11% Similarity=0.013 Sum_probs=150.9
Q ss_pred CCChhHHHHHHHHHHhCCChHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHH
Q 037713 137 CDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK---NSVSWTAMLSAYARSGRKKDAMEIFEQAPV---RNLFLWTALVS 210 (610)
Q Consensus 137 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 210 (610)
..+..+.-.-.+-+...+++.+..++++.+.+. ....+..-|.++.+.|+..+-..+=.++.+ ....+|-++..
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGC 320 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHH
Confidence 344444444555555555555555555555433 223333444445555443333332222221 13455555555
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhC---CCCchhHHHHHHHHHHhcC
Q 037713 211 GLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALG---YESCLFISNAIVDMYAKCS 287 (610)
Q Consensus 211 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~y~~~g 287 (610)
-|.-.|+..+|.+.|.+...... .=...|......++..+.-++|...+..+.+.- ..|.. | +.--|.+.+
T Consensus 321 YYl~i~k~seARry~SKat~lD~--~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~L--Y--lgmey~~t~ 394 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDP--TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSL--Y--LGMEYMRTN 394 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCc--cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHH--H--HHHHHHHhc
Confidence 55555666666666655443321 233445555555555555666655555554431 11221 1 233455666
Q ss_pred CHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHc----C-CC-CCHHHHHHHHHHHhccCCHHHH
Q 037713 288 DIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSA----G-VK-PNEVTFVGLIYACSHVGLVGKG 358 (610)
Q Consensus 288 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g-~~-p~~~t~~~ll~a~~~~g~~~~a 358 (610)
+++-|.++|.+... .|+...+-+.-..-..+.+.+|..+|+..... + -+ --..+++.|..+|.+.+.+++|
T Consensus 395 n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred cHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 77777777766542 35666666666556667777777777765521 0 01 1344567777777777777777
Q ss_pred HHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 037713 359 RKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPDEPTWAALLS 415 (610)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~ 415 (610)
+..++.... -.+.+..+|.++.-.|...|+++.|.+.|.+. .++|+..+-..+++
T Consensus 475 I~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 475 IDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred HHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 777777765 34556677777777777777777777777766 66777666655555
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.9e-06 Score=85.57 Aligned_cols=440 Identities=11% Similarity=0.041 Sum_probs=270.9
Q ss_pred hhhccCChHHHHHHHHHHHHhCCCCCCchHHHHHHHhhcCCChHHHHHHHccCCC---CCcchHHHHHHHHHcCCCchHH
Q 037713 12 VCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ---RDHVSWASILTAYNQANLPQKT 88 (610)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A 88 (610)
-|-..+....+......+++ +.+.++.+....-=.+...|+.++|......-.+ .+.++|..+.-.+-...++++|
T Consensus 16 k~yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~ea 94 (700)
T KOG1156|consen 16 KCYETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEA 94 (700)
T ss_pred HHHHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHH
Confidence 34556677777887777777 4444444444333334567899999988876654 4678899998888888999999
Q ss_pred HHHHHHhHHCCCCCCChh-hHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcC
Q 037713 89 ISIFSTMLALDKLQPDHF-VFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIK 167 (610)
Q Consensus 89 ~~~~~~m~~~~~~~pd~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 167 (610)
+..|..... +.||.. .+.-+--.-++.++++.....-.++.+.. +.....|..+..++.-.|+...|..+++...
T Consensus 95 iKcy~nAl~---~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~ 170 (700)
T KOG1156|consen 95 IKCYRNALK---IEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFE 170 (700)
T ss_pred HHHHHHHHh---cCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988 456554 34333333356778887777777777654 4556678888888999999999999988765
Q ss_pred C-----CChhhHHHH------HHHHHhcCCHHHHHHHHhhCCCC--Ch-hhHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 037713 168 L-----KNSVSWTAM------LSAYARSGRKKDAMEIFEQAPVR--NL-FLWTALVSGLVQSRNEIDAFYSFIEMRREGV 233 (610)
Q Consensus 168 ~-----~~~~~~~~l------i~~~~~~g~~~~A~~~~~~~~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 233 (610)
+ ++...+... .....+.|..++|.+-+...... |- ..-.+-...+.+.++.++|..++..+....
T Consensus 171 ~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn- 249 (700)
T KOG1156|consen 171 KTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN- 249 (700)
T ss_pred HhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-
Confidence 2 344443332 23457788899998888765433 22 233345667889999999999999999876
Q ss_pred CCCCHhHHHHHHHHHh-cc-ccHHHHHHHHHHHHHhCC---CCchhHHHHHHHHHHhcCCHHH-HHHHHHhcCCC-ChhH
Q 037713 234 DIVDPLVLSSIVGACA-NF-AVLELGKQIHGLVIALGY---ESCLFISNAIVDMYAKCSDIIA-AKDIFGRMRRK-DVVS 306 (610)
Q Consensus 234 ~~p~~~t~~~ll~~~~-~~-~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~y~~~g~~~~-A~~~~~~~~~~-~~~~ 306 (610)
||..-|...+..+. +. +..+....++....+.-. .|-....+ ++ ...++.+ ...++..+.++ -+.+
T Consensus 250 --Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlpls-vl----~~eel~~~vdkyL~~~l~Kg~p~v 322 (700)
T KOG1156|consen 250 --PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLS-VL----NGEELKEIVDKYLRPLLSKGVPSV 322 (700)
T ss_pred --chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHH-Hh----CcchhHHHHHHHHHHHhhcCCCch
Confidence 77777666655554 22 333333355554443311 11100000 00 1111222 22222222222 1233
Q ss_pred HHHHHHHHHhcCChHHHHHHH----HHHHHcC----------CCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHHhcC
Q 037713 307 WTSIIVGTAQHGQAEETLALY----DEMVSAG----------VKPNE--VTFVGLIYACSHVGLVGKGRKLFKSMIEDYG 370 (610)
Q Consensus 307 ~~~li~~~~~~g~~~~A~~l~----~~m~~~g----------~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 370 (610)
+..+.+-|-.-...+-..++. ..+...| -+|.. .|+..+...+-+.|+++.|..+++..+.
T Consensus 323 f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--- 399 (700)
T KOG1156|consen 323 FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--- 399 (700)
T ss_pred hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc---
Confidence 344443333222221111111 1111111 13443 3445667788899999999999998865
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCc-----
Q 037713 371 ITPS-LQHYTCLLDLLSRSGHLDEAENLIKAM-P-FEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS----- 442 (610)
Q Consensus 371 ~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~----- 442 (610)
..|+ ++.|..=.+.+...|.+++|..++++. . ..||...-.--.....+..+.++|.++..+...-+-+-..
T Consensus 400 HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~m 479 (700)
T KOG1156|consen 400 HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEM 479 (700)
T ss_pred cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHh
Confidence 3555 467777778889999999999999888 2 2345444334445566788999999988877654421100
Q ss_pred --ch--HhHHHHhhhhcchhHHHHHHHHH
Q 037713 443 --SY--ILLSNVYASAAMWQHVSKVRKLM 467 (610)
Q Consensus 443 --~~--~~l~~~~~~~g~~~~a~~~~~~m 467 (610)
.| ..=+.+|.++|+|.+|.+-+..+
T Consensus 480 qcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 480 QCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred hhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 11 12356788888888887755444
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.6e-08 Score=101.24 Aligned_cols=231 Identities=14% Similarity=0.134 Sum_probs=171.1
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHc-----CCCCCCHhHHH-HHHHHHhccccHHHHHHHHHHHHHh-----CC--C
Q 037713 204 LWTALVSGLVQSRNEIDAFYSFIEMRRE-----GVDIVDPLVLS-SIVGACANFAVLELGKQIHGLVIAL-----GY--E 270 (610)
Q Consensus 204 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~~p~~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~-----~~--~ 270 (610)
+..-+...|...|+++.|..+++...+. |...|...+.. .+...|...+.+++|..+|+.+... |- +
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3344777888888888888888877654 32224444433 3667788888888888888888664 21 1
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC----------CCh-hHHHHHHHHHHhcCChHHHHHHHHHHHH---cCCC
Q 037713 271 SCLFISNAIVDMYAKCSDIIAAKDIFGRMRR----------KDV-VSWTSIIVGTAQHGQAEETLALYDEMVS---AGVK 336 (610)
Q Consensus 271 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----------~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~---~g~~ 336 (610)
.-..+++.|..+|.+.|++++|...+++..+ +.+ ...+.++..+...+++++|..++++..+ .-+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 2245667777889999999888877776542 222 3466777888899999999999987654 1133
Q ss_pred CC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc----C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC-----
Q 037713 337 PN----EVTFVGLIYACSHVGLVGKGRKLFKSMIEDY----G-ITPS-LQHYTCLLDLLSRSGHLDEAENLIKAM----- 401 (610)
Q Consensus 337 p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~----~-~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m----- 401 (610)
++ ..+++.|...|.+.|++++|.++|++++... + ..+. ...++-|...|.+.++.++|.++|.+.
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 33 3578999999999999999999999987753 1 1222 467788899999999999999998876
Q ss_pred ---CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHh
Q 037713 402 ---PFEPD-EPTWAALLSACKHHRNTEMGTRVANHLL 434 (610)
Q Consensus 402 ---~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 434 (610)
+..|+ ..+|..|...|...|+++.|+++.+.+.
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 23444 5678999999999999999999999887
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.9e-07 Score=86.08 Aligned_cols=387 Identities=11% Similarity=0.006 Sum_probs=235.6
Q ss_pred HHHHHHhhcCCChHHHHHHHccCCCCC-cchHHHHHHHHHcCC-CchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccC
Q 037713 42 NTLIDAYGKCDLVQYAHHLLEEMPQRD-HVSWASILTAYNQAN-LPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLG 119 (610)
Q Consensus 42 ~~li~~~~~~g~~~~A~~~f~~m~~~~-~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~ 119 (610)
...+..|...++-+.|.....+.+..- ..--|.|+.-+-+.| +-.++.--+......- | ... ..|.+..+.+
T Consensus 101 r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrec---p--~aL-~~i~~ll~l~ 174 (564)
T KOG1174|consen 101 RRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIREC---P--MAL-QVIEALLELG 174 (564)
T ss_pred HHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhc---c--hHH-HHHHHHHHHh
Confidence 456677777788888888888877543 333344443333332 2222222222222211 1 011 1111111110
Q ss_pred CcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhC--CChHHHHHHHHhcC-----CCChhhHHHHHHHHHhcCCHHHHHH
Q 037713 120 ATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKC--GLPNNARAVFDSIK-----LKNSVSWTAMLSAYARSGRKKDAME 192 (610)
Q Consensus 120 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~-----~~~~~~~~~li~~~~~~g~~~~A~~ 192 (610)
+..+...-..|-+..++|...+...-+.+|+.+ ++-..|...+-... ..|+.....+...+...|+.++|+.
T Consensus 175 -v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~ 253 (564)
T KOG1174|consen 175 -VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAED 253 (564)
T ss_pred -hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHH
Confidence 111112222233333444444444445554443 34334444332222 2367777788888888888888888
Q ss_pred HHhhCCCCChhhHHHH---HHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCC
Q 037713 193 IFEQAPVRNLFLWTAL---VSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGY 269 (610)
Q Consensus 193 ~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 269 (610)
.|++...-|+.+...| .-.+.+.|++++...+...+....- -....|..-+...-..++++.|..+-+..++..
T Consensus 254 ~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~--~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~- 330 (564)
T KOG1174|consen 254 IFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK--YTASHWFVHAQLLYDEKKFERALNFVEKCIDSE- 330 (564)
T ss_pred HHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh--cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-
Confidence 8887665544433332 2345667777777777776655321 122223333333345566777777766666543
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--C-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037713 270 ESCLFISNAIVDMYAKCSDIIAAKDIFGRMR--R-KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLI 346 (610)
Q Consensus 270 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 346 (610)
+.++..+-.-...+...|+.++|.-.|.... . -+..+|..|+..|...|++.+|.-+-+...+. +..+..+...+.
T Consensus 331 ~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g 409 (564)
T KOG1174|consen 331 PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFG 409 (564)
T ss_pred cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhc
Confidence 2233333333456667888999988888765 3 37889999999999999999998887776553 334555655442
Q ss_pred -HHHh-ccCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCc
Q 037713 347 -YACS-HVGLVGKGRKLFKSMIEDYGITPS-LQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPDEPTWAALLSACKHHRN 422 (610)
Q Consensus 347 -~a~~-~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~ 422 (610)
..|. ....-++|..++++.. .+.|+ ....+.+...+...|..+++..++++. ...||....+.|...+...+.
T Consensus 410 ~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne 486 (564)
T KOG1174|consen 410 TLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNE 486 (564)
T ss_pred ceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhh
Confidence 3333 2233577888888764 35665 466777888899999999999999887 778999999999999999999
Q ss_pred hhHHHHHHHHHhcCCCCCCc
Q 037713 423 TEMGTRVANHLLSLKPEDPS 442 (610)
Q Consensus 423 ~~~a~~~~~~~~~~~p~~~~ 442 (610)
+++|...|..++.++|++..
T Consensus 487 ~Q~am~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 487 PQKAMEYYYKALRQDPKSKR 506 (564)
T ss_pred HHHHHHHHHHHHhcCccchH
Confidence 99999999999999998743
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.8e-08 Score=107.34 Aligned_cols=257 Identities=14% Similarity=0.027 Sum_probs=182.9
Q ss_pred ChhhHHHHHHHHHh-----cCCHHHHHHHHhhCCCC---ChhhHHHHHHHHH---------hCCChHHHHHHHHHHHHcC
Q 037713 170 NSVSWTAMLSAYAR-----SGRKKDAMEIFEQAPVR---NLFLWTALVSGLV---------QSRNEIDAFYSFIEMRREG 232 (610)
Q Consensus 170 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~~~ 232 (610)
+...|...+.+-.. .+.+++|...|++..+. +...|..+..+|. ..+++++|...+++..+..
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld 334 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD 334 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC
Confidence 45556566665322 23467999999987654 3456666655544 2345889999999999876
Q ss_pred CCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-hhHHHH
Q 037713 233 VDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR--KD-VVSWTS 309 (610)
Q Consensus 233 ~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~~~~~~ 309 (610)
|.+...+..+...+...|++++|...++++.+.+ +.+...+..+...|...|++++|...|++..+ |+ ...+..
T Consensus 335 --P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~ 411 (553)
T PRK12370 335 --HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGIT 411 (553)
T ss_pred --CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHH
Confidence 3577888888888899999999999999999986 45667888899999999999999999999875 43 223344
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhc
Q 037713 310 IIVGTAQHGQAEETLALYDEMVSAGVKP-NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRS 388 (610)
Q Consensus 310 li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 388 (610)
++..+...|++++|+..+++..... .| +...+..+..++...|+.++|...+..+... .+.+....+.+...|.+.
T Consensus 412 ~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 412 KLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhcc
Confidence 4555777899999999999987653 34 3445667778888999999999999887552 222344556666677777
Q ss_pred CCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCC
Q 037713 389 GHLDEAENLIKAM----PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLK 437 (610)
Q Consensus 389 g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 437 (610)
| ++|...++.+ ...|...-+.. ..+.-+|+.+.+... +++.+.+
T Consensus 489 g--~~a~~~l~~ll~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 489 S--ERALPTIREFLESEQRIDNNPGLLP--LVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred H--HHHHHHHHHHHHHhhHhhcCchHHH--HHHHHHhhhHHHHHH-HHhhccc
Confidence 7 4777766665 33344334433 335566776766666 7766554
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.9e-07 Score=93.46 Aligned_cols=439 Identities=14% Similarity=0.083 Sum_probs=251.4
Q ss_pred ccCChHHHHHHHHHHH----HhCCCCCCchHHHHHHHhhcCCChHHHHHHHccCCC---CCcchHHHHHHHHHcCCCchH
Q 037713 15 RHQIALTVKTLHAQII----KLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ---RDHVSWASILTAYNQANLPQK 87 (610)
Q Consensus 15 ~~~~~~~~~~~~~~~~----~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~ 87 (610)
....++++....-.+. ...+.-|+.+|..|.=+..++|+++.+.+.|++... .....|+.+-..|...|.-..
T Consensus 296 ~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~ 375 (799)
T KOG4162|consen 296 PRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSK 375 (799)
T ss_pred ccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchH
Confidence 3444555544333322 223456888999999999999999999999988653 245569999999999999999
Q ss_pred HHHHHHHhHHCCCCCC-ChhhHHHHHHHHh-ccCCcHHHHHHHHHHHhc--CC--CCChhHHHHHHHHHHhCC-------
Q 037713 88 TISIFSTMLALDKLQP-DHFVFASLVKACG-SLGATRLGKQVHACFVLS--PF--CDDDVVKSSLVDMYAKCG------- 154 (610)
Q Consensus 88 A~~~~~~m~~~~~~~p-d~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~~~~~g------- 154 (610)
|+.+++.-.... ..| |...+-..-+.|. +.+..+++...-.+++.. +. ......+-.+.-+|...-
T Consensus 376 Av~ll~~~~~~~-~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~s 454 (799)
T KOG4162|consen 376 AVNLLRESLKKS-EQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKS 454 (799)
T ss_pred HHHHHHhhcccc-cCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChH
Confidence 999998776533 224 4444544445564 556777777776666652 11 112233444444443221
Q ss_pred ----ChHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHhhCC----CCChhhHHHHHHHHHhCCChHHHHH
Q 037713 155 ----LPNNARAVFDSIKLK---NSVSWTAMLSAYARSGRKKDAMEIFEQAP----VRNLFLWTALVSGLVQSRNEIDAFY 223 (610)
Q Consensus 155 ----~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~ 223 (610)
...++.+.+++..+. |....--+.--|+..++++.|.+...+.. ..+...|..+.-.+...+++.+|+.
T Consensus 455 eR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~ 534 (799)
T KOG4162|consen 455 ERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALD 534 (799)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHH
Confidence 122334444444322 22222222233445555555555544422 2245566666666666666666666
Q ss_pred HHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---
Q 037713 224 SFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR--- 300 (610)
Q Consensus 224 ~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--- 300 (610)
+.+.....-. .|......-+..-...++.+++......+... |...- .....|+-....+.+..+.
T Consensus 535 vvd~al~E~~--~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~--------we~~~-~~q~~~~~g~~~~lk~~l~la~ 603 (799)
T KOG4162|consen 535 VVDAALEEFG--DNHVLMDGKIHIELTFNDREEALDTCIHKLAL--------WEAEY-GVQQTLDEGKLLRLKAGLHLAL 603 (799)
T ss_pred HHHHHHHHhh--hhhhhchhhhhhhhhcccHHHHHHHHHHHHHH--------HHhhh-hHhhhhhhhhhhhhhcccccCc
Confidence 6555443210 12222222222222233443333333222211 00000 0001111222233333322
Q ss_pred -C-CCh-hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CC------HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 037713 301 -R-KDV-VSWTSIIVGTAQHGQAEETLALYDEMVSAGVK--PN------EVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369 (610)
Q Consensus 301 -~-~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p~------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 369 (610)
+ .|. .++.-+ .+... -+...+..-.. |...-+. |+ ...|......+.+.+..++|...+.+..+
T Consensus 604 ~q~~~a~s~sr~l-s~l~a-~~~~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~-- 678 (799)
T KOG4162|consen 604 SQPTDAISTSRYL-SSLVA-SQLKSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK-- 678 (799)
T ss_pred ccccccchhhHHH-HHHHH-hhhhhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--
Confidence 0 122 222222 12211 11111110000 2221122 22 12344566778889999999988888765
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHH--HHHHHhcCCCCCCcchH
Q 037713 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD-EPTWAALLSACKHHRNTEMGTR--VANHLLSLKPEDPSSYI 445 (610)
Q Consensus 370 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~ 445 (610)
-.+.....|......+...|.+++|.+.|... .+.|+ +....++...+...|+...|.. ++..+++++|.++.+|.
T Consensus 679 ~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~ 758 (799)
T KOG4162|consen 679 IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWY 758 (799)
T ss_pred cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHH
Confidence 23445577777778889999999999988877 67776 5677888888999999888888 99999999999999999
Q ss_pred hHHHHhhhhcchhHHHHHHHHHhhC
Q 037713 446 LLSNVYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 446 ~l~~~~~~~g~~~~a~~~~~~m~~~ 470 (610)
.|+.++.+.|+.++|.+.|....+.
T Consensus 759 ~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 759 YLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHHHccchHHHHHHHHHHHhh
Confidence 9999999999999999999887653
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.9e-09 Score=95.80 Aligned_cols=229 Identities=10% Similarity=0.044 Sum_probs=167.7
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 037713 206 TALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAK 285 (610)
Q Consensus 206 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 285 (610)
+.|..+|.+.|.+.+|.+.|+.-.... |-+.||..+-++|.+..+.+.|..++.+-++. ++.|+....-....+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~---~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF---PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC---CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 567788999999999999888877764 77778888888888888888888888877664 34455555666667777
Q ss_pred cCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 037713 286 CSDIIAAKDIFGRMRRK---DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF 362 (610)
Q Consensus 286 ~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 362 (610)
.++.++|.++++...+. ++.+..++..+|.-.++++-|+.+|+++.+.|+. +...|+.+.-+|.-.+.+|-+..-|
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 77888888888777642 5556666667777778888888888888887766 6677777777777777777666666
Q ss_pred HHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCc
Q 037713 363 KSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442 (610)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 442 (610)
+..... .-+.++| ..+|..|.......|++..|.+.|+-.+..+|++..
T Consensus 382 ~RAlst-------------------at~~~~a------------aDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~e 430 (478)
T KOG1129|consen 382 QRALST-------------------ATQPGQA------------ADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGE 430 (478)
T ss_pred HHHHhh-------------------ccCcchh------------hhhhhccceeEEeccchHHHHHHHHHHhccCcchHH
Confidence 555431 1111111 334555555566678888888888888888888888
Q ss_pred chHhHHHHhhhhcchhHHHHHHHHHhhC
Q 037713 443 SYILLSNVYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 443 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 470 (610)
+++.|+-+-.+.|+.++|..++....+.
T Consensus 431 alnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 431 ALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 8888888888888888888888777653
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.7e-08 Score=95.95 Aligned_cols=211 Identities=12% Similarity=0.068 Sum_probs=139.2
Q ss_pred ccHHHHHHHHHHHHHhC-CCC--chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHH
Q 037713 252 AVLELGKQIHGLVIALG-YES--CLFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLA 325 (610)
Q Consensus 252 ~~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 325 (610)
+..+.+..-+.+++... ..| ....+..+...|.+.|+.++|...|++..+ .+...|+.+...+...|++++|..
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34455555555555432 122 235577777788888888888888887763 356788888888888999999999
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC--C
Q 037713 326 LYDEMVSAGVKP-NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM--P 402 (610)
Q Consensus 326 l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~ 402 (610)
.|++..+. .| +..++..+..++...|++++|.+.|+...+. .|+..........+...++.++|.+.|++. .
T Consensus 120 ~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 88888875 34 3567777888888889999999888888763 343322222223344567888888888654 2
Q ss_pred CCCCHHHHHHHHHHHHhcCchhHHHHHHHHHh-------cCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhCC
Q 037713 403 FEPDEPTWAALLSACKHHRNTEMGTRVANHLL-------SLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVME 471 (610)
Q Consensus 403 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 471 (610)
..|+...| .......|+...+ ..++.+. ++.|..+.+|..++.+|...|++++|...++...+.+
T Consensus 195 ~~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 LDKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CCccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 23332222 1222334554443 2333333 3345556788889999999999999999888876544
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.4e-06 Score=79.78 Aligned_cols=408 Identities=11% Similarity=0.032 Sum_probs=239.2
Q ss_pred HhhcCCChHHHHHHHccCCCC---Cc-chHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcH
Q 037713 47 AYGKCDLVQYAHHLLEEMPQR---DH-VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATR 122 (610)
Q Consensus 47 ~~~~~g~~~~A~~~f~~m~~~---~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~ 122 (610)
-+....++..|+.+++--..- .. .+--.+...+.+-|++++|+..+..+.+.. .|+...+..|.-...-.|...
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHHHH
Confidence 344456777777777643311 11 112234456678899999999998877754 555555555554445567788
Q ss_pred HHHHHHHHHHhcCCCCChhHH-HHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Q 037713 123 LGKQVHACFVLSPFCDDDVVK-SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201 (610)
Q Consensus 123 ~a~~~~~~~~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 201 (610)
+|+++-... |+.... ..|.+.-.+.++-++-..+-..+.... .---+|.+..-..-.+.+|+.++.++...+
T Consensus 109 eA~~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn 181 (557)
T KOG3785|consen 109 EAKSIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQDN 181 (557)
T ss_pred HHHHHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 887776543 333333 345566667777766666555554321 222233333333445788888888876443
Q ss_pred --hhhHHHH-HHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhc--c--ccH--HHHHH----------HHH
Q 037713 202 --LFLWTAL-VSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACAN--F--AVL--ELGKQ----------IHG 262 (610)
Q Consensus 202 --~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~--~--~~~--~~a~~----------~~~ 262 (610)
-...|.- .-+|.+..-++-+.+++.--.+.- ||+. +..=+.+|.. . |.. ++-.. ..+
T Consensus 182 ~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~---pdSt-iA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~ 257 (557)
T KOG3785|consen 182 PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF---PDST-IAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIE 257 (557)
T ss_pred hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC---CCcH-HHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHH
Confidence 3444443 346677777777777777766543 4432 2222223321 1 111 01011 112
Q ss_pred HHHHhCC------C------Cc-----hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCC------
Q 037713 263 LVIALGY------E------SC-----LFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQ------ 319 (610)
Q Consensus 263 ~~~~~~~------~------~~-----~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~------ 319 (610)
.+.++++ + |. +..--.|+-.|.+.+++++|..+.+.+...++.-|-.-.-.++..|+
T Consensus 258 ~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSre 337 (557)
T KOG3785|consen 258 YLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSRE 337 (557)
T ss_pred HHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHH
Confidence 2222211 0 10 11223455668899999999999998876555545443444444443
Q ss_pred -hHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037713 320 -AEETLALYDEMVSAGVKPNEV-TFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENL 397 (610)
Q Consensus 320 -~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 397 (610)
..-|.+.|+-.-+++..-|.. --.++.+++.-..++++.+-+++.+.. |-...|...| .+..+++..|.+.+|+++
T Consensus 338 HlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s-YF~NdD~Fn~-N~AQAk~atgny~eaEel 415 (557)
T KOG3785|consen 338 HLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES-YFTNDDDFNL-NLAQAKLATGNYVEAEEL 415 (557)
T ss_pred HHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcchhhh-HHHHHHHHhcChHHHHHH
Confidence 344555555544444333321 123445555556778999999988866 4444454444 478899999999999999
Q ss_pred HHhC-CCC-CCHHHHHHHHHH-HHhcCchhHHHHHHHHHhcCC-CCCC-cchHhHHHHhhhhcchhHHHHHHHHHhhCCC
Q 037713 398 IKAM-PFE-PDEPTWAALLSA-CKHHRNTEMGTRVANHLLSLK-PEDP-SSYILLSNVYASAAMWQHVSKVRKLMSVMEV 472 (610)
Q Consensus 398 ~~~m-~~~-p~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~-p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 472 (610)
|-++ +.+ .|..+|.+++.- |.+.+.++.|..++- +.+ |.+. .....+++-|.+++.+--|.+.|+.+.....
T Consensus 416 f~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~l---k~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 416 FIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMML---KTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred HhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHH---hcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 9887 222 467777776655 678889998877654 333 3222 2334667889999999999999998875433
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.5e-07 Score=89.20 Aligned_cols=217 Identities=10% Similarity=-0.017 Sum_probs=144.5
Q ss_pred CChHHHHHHHHHHHHcCC-CCCC-HhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 037713 216 RNEIDAFYSFIEMRREGV-DIVD-PLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAK 293 (610)
Q Consensus 216 g~~~~A~~~~~~m~~~~~-~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 293 (610)
+..+.++.-+.++..... .|++ ...|......+...|+.+.|...+..+.+.. +.+...++.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 455666666666664321 1111 3445566666777777888877777777764 345778888888899999999999
Q ss_pred HHHHhcCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC
Q 037713 294 DIFGRMRR--K-DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYG 370 (610)
Q Consensus 294 ~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 370 (610)
..|++..+ | +..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...|..... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 98888864 3 4678888888888999999999999998875 44433222222234456789999999977654 2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHH--HHHHHhC-CC----CC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC
Q 037713 371 ITPSLQHYTCLLDLLSRSGHLDEA--ENLIKAM-PF----EP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440 (610)
Q Consensus 371 ~~~~~~~~~~li~~~~~~g~~~~A--~~~~~~m-~~----~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 440 (610)
..|+...+ .++.. ..|+..++ .+.+.+. .. .| ....|..+...+...|++++|...|+++++.+|.+
T Consensus 195 ~~~~~~~~-~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 195 LDKEQWGW-NIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred CCccccHH-HHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 33433222 23333 34544333 3222221 11 12 24578889999999999999999999999999754
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.6e-05 Score=78.79 Aligned_cols=398 Identities=13% Similarity=0.129 Sum_probs=212.4
Q ss_pred HHHHHHHccCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhc
Q 037713 55 QYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLS 134 (610)
Q Consensus 55 ~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 134 (610)
+.++..+.+|| ..|-.-+..+..+|+.......|...+..=++.-....|...++.....+-++.+..++..-++.
T Consensus 92 er~lv~mHkmp----RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~ 167 (835)
T KOG2047|consen 92 ERCLVFMHKMP----RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV 167 (835)
T ss_pred HHHHHHHhcCC----HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 44444455554 45777777778888888888888877664324445567888888877888888888888888764
Q ss_pred CCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCC----------ChhhHHHHHHHHHhcCCHH---HHHHHHhhCCCC-
Q 037713 135 PFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK----------NSVSWTAMLSAYARSGRKK---DAMEIFEQAPVR- 200 (610)
Q Consensus 135 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----------~~~~~~~li~~~~~~g~~~---~A~~~~~~~~~~- 200 (610)
. | ..-+-.+..+++.+++++|.+.+...... +-..|..+-+..++.-+.- ....+++.+..+
T Consensus 168 ~--P--~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rf 243 (835)
T KOG2047|consen 168 A--P--EAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRF 243 (835)
T ss_pred C--H--HHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccC
Confidence 3 2 33666778888888888888888777633 3345666555555443322 223445555433
Q ss_pred -C--hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHH--------------------
Q 037713 201 -N--LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG-------------------- 257 (610)
Q Consensus 201 -~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a-------------------- 257 (610)
| ...|++|..-|.+.|.+++|.++|++..+.- ....-|..+.++|+.-.....+
T Consensus 244 tDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v---~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~ 320 (835)
T KOG2047|consen 244 TDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV---MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLE 320 (835)
T ss_pred cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh---eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHH
Confidence 2 3578888888999999999988888876653 3344455555555442221111
Q ss_pred --HHHHHHHHHhC-----------CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---C------ChhHHHHHHHHHH
Q 037713 258 --KQIHGLVIALG-----------YESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR---K------DVVSWTSIIVGTA 315 (610)
Q Consensus 258 --~~~~~~~~~~~-----------~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~------~~~~~~~li~~~~ 315 (610)
..-++.+...+ -+.++..|..-+..| .|+..+-..+|.+..+ | -...|..+..-|-
T Consensus 321 ~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe 398 (835)
T KOG2047|consen 321 LHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYE 398 (835)
T ss_pred HHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHH
Confidence 11122221111 011122222222111 2333333444433321 1 2234666666666
Q ss_pred hcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC----------C-------CH
Q 037713 316 QHGQAEETLALYDEMVSAGVKPN---EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGIT----------P-------SL 375 (610)
Q Consensus 316 ~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~----------~-------~~ 375 (610)
.+|+.+.|..+|++..+...+-- ..+|..-...=.+..+++.|.++.+....- .-. | +.
T Consensus 399 ~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSl 477 (835)
T KOG2047|consen 399 NNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSL 477 (835)
T ss_pred hcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhH
Confidence 66666666666666654322211 122333333333445566666665554321 000 0 22
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC---CC-CCCHH-HHHHHHHHHHhcCchhHHHHHHHHHhcCCCC--CCcchHhHH
Q 037713 376 QHYTCLLDLLSRSGHLDEAENLIKAM---PF-EPDEP-TWAALLSACKHHRNTEMGTRVANHLLSLKPE--DPSSYILLS 448 (610)
Q Consensus 376 ~~~~~li~~~~~~g~~~~A~~~~~~m---~~-~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~ 448 (610)
..|.-.++..-..|-++....+++++ .+ .|... .|..+ +-.+.-++++.+++++-+.+.|- -...++...
T Consensus 478 kiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmf---LEeh~yfeesFk~YErgI~LFk~p~v~diW~tYL 554 (835)
T KOG2047|consen 478 KIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMF---LEEHKYFEESFKAYERGISLFKWPNVYDIWNTYL 554 (835)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHH---HHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHH
Confidence 34555555555666666666666665 11 12211 12111 33455566666666666665532 111222222
Q ss_pred HHh---hhhcchhHHHHHHHHHhh
Q 037713 449 NVY---ASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 449 ~~~---~~~g~~~~a~~~~~~m~~ 469 (610)
.-+ ...-+.+.|..+|+...+
T Consensus 555 tkfi~rygg~klEraRdLFEqaL~ 578 (835)
T KOG2047|consen 555 TKFIKRYGGTKLERARDLFEQALD 578 (835)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHh
Confidence 211 122356666666666655
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.94 E-value=4e-06 Score=86.59 Aligned_cols=254 Identities=13% Similarity=0.099 Sum_probs=150.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 037713 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYA 284 (610)
Q Consensus 205 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 284 (610)
+.-+...|-..|++++|++++++..+.. |..+..|..-...+-+.|++.+|....+.+.+.. ..|..+-+..+..+.
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHH
Confidence 3455666778888888888888888765 2446778888888888888888888888888775 346777777888888
Q ss_pred hcCCHHHHHHHHHhcCCCCh----------hHH--HHHHHHHHhcCChHHHHHHHHHHHHc--CC---CCC---------
Q 037713 285 KCSDIIAAKDIFGRMRRKDV----------VSW--TSIIVGTAQHGQAEETLALYDEMVSA--GV---KPN--------- 338 (610)
Q Consensus 285 ~~g~~~~A~~~~~~~~~~~~----------~~~--~~li~~~~~~g~~~~A~~l~~~m~~~--g~---~p~--------- 338 (610)
++|++++|.+++....+++. ..| .....+|.+.|++..|++.|....+. .+ .-|
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~ 353 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKM 353 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhc
Confidence 89999999888887766541 123 33466788888888888776655431 01 122
Q ss_pred -HHHHHHHHHHHhccCC-------HHHHHHHHHHhHHhcCCCC-----------CHHHHHHHHHHH---HhcCCHHHHHH
Q 037713 339 -EVTFVGLIYACSHVGL-------VGKGRKLFKSMIEDYGITP-----------SLQHYTCLLDLL---SRSGHLDEAEN 396 (610)
Q Consensus 339 -~~t~~~ll~a~~~~g~-------~~~a~~~~~~~~~~~~~~~-----------~~~~~~~li~~~---~~~g~~~~A~~ 396 (610)
..+|..+++..-+... ...|.+++-.+........ +..--..+-.-. .+...-+++..
T Consensus 354 t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~ 433 (517)
T PF12569_consen 354 TLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEK 433 (517)
T ss_pred cHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 2333334333222211 1233444444332100000 000000000000 01111111111
Q ss_pred HHH-----------hC----C--CCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhH
Q 037713 397 LIK-----------AM----P--FEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQH 459 (610)
Q Consensus 397 ~~~-----------~m----~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 459 (610)
.-. .. + ..||+.- ..|+ ....=.++|.++++-+.+..|++..+|..--.+|.+.|++-.
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~G-ekL~---~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LL 509 (517)
T PF12569_consen 434 AAKKEPKKQQNKSKKKEKVEPKKKDDDPLG-EKLL---KTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLL 509 (517)
T ss_pred HHhhhhhhhhccccccccccCCcCCCCccH-HHHh---cCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHH
Confidence 100 00 1 1122211 1122 223357889999999999999999999999999999999988
Q ss_pred HHHHHH
Q 037713 460 VSKVRK 465 (610)
Q Consensus 460 a~~~~~ 465 (610)
|.+.+.
T Consensus 510 aLqaL~ 515 (517)
T PF12569_consen 510 ALQALK 515 (517)
T ss_pred HHHHHH
Confidence 887654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.5e-08 Score=90.11 Aligned_cols=192 Identities=11% Similarity=0.092 Sum_probs=162.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHhcc
Q 037713 276 SNAIVDMYAKCSDIIAAKDIFGRMRR--KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFV-GLIYACSHV 352 (610)
Q Consensus 276 ~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~a~~~~ 352 (610)
-+.+..+|.+.|-+.+|.+.|+.-.+ |-+.||-.|-.+|.+..+++.|+.+|.+-.+. .|-.+||. ...+.+-..
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHH
Confidence 35688899999999999999998763 67889999999999999999999999998875 67777765 466778888
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCchhHHHHH
Q 037713 353 GLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM---PFEPDEPTWAALLSACKHHRNTEMGTRV 429 (610)
Q Consensus 353 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 429 (610)
++.++|.++++...+. -+.+++...++...|.-.++.+-|+.+++++ ++ -++..|+.+.-.|.-.++++.++.-
T Consensus 304 ~~~~~a~~lYk~vlk~--~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKL--HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HhHHHHHHHHHHHHhc--CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHH
Confidence 9999999999999873 4557788889999999999999999999876 54 3778899999999999999999999
Q ss_pred HHHHhcCC--CC-CCcchHhHHHHhhhhcchhHHHHHHHHHhhCCC
Q 037713 430 ANHLLSLK--PE-DPSSYILLSNVYASAAMWQHVSKVRKLMSVMEV 472 (610)
Q Consensus 430 ~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 472 (610)
|++++..- |. -...|..|+.+....|++..|.+.|+.....+.
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~ 426 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA 426 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc
Confidence 99998543 32 346788999999999999999999988765443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.4e-05 Score=84.31 Aligned_cols=427 Identities=12% Similarity=0.110 Sum_probs=246.7
Q ss_pred hhhhhccCChHHHHHHHHHHHHhCCCCCCchHHHHHHHhhcCCChHH-HHH---HHccC------CCCC-----------
Q 037713 10 LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQY-AHH---LLEEM------PQRD----------- 68 (610)
Q Consensus 10 l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~---~f~~m------~~~~----------- 68 (610)
..-+-+.+++......++..+..|.. |+.++|+|...|....+-.+ -++ .++.. .++|
T Consensus 845 v~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerG 923 (1666)
T KOG0985|consen 845 VEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERG 923 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeeccc
Confidence 44455677888888888888888864 88899999988877654322 111 00000 0111
Q ss_pred --------cc----hHHHHHHHHHcCCCchHH-----------HHHHHHhHHCCCC--CCChhhHHHHHHHHhccCCcHH
Q 037713 69 --------HV----SWASILTAYNQANLPQKT-----------ISIFSTMLALDKL--QPDHFVFASLVKACGSLGATRL 123 (610)
Q Consensus 69 --------~~----~~~~li~~~~~~g~~~~A-----------~~~~~~m~~~~~~--~pd~~~~~~ll~~~~~~~~~~~ 123 (610)
+- .|-...+-+.+..+++-= ..+.++....+ + ..|+...+..++++...+-+.+
T Consensus 924 qcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~ta-l~E~~dPe~vS~tVkAfMtadLp~e 1002 (1666)
T KOG0985|consen 924 QCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTA-LPETQDPEEVSVTVKAFMTADLPNE 1002 (1666)
T ss_pred CCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhc-CCccCChHHHHHHHHHHHhcCCcHH
Confidence 00 122222233333332211 13334444332 2 2356666777788888888888
Q ss_pred HHHHHHHHHhcC--CCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCC---
Q 037713 124 GKQVHACFVLSP--FCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP--- 198 (610)
Q Consensus 124 a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--- 198 (610)
-.++++.++-.. +..+....|.|+-.-.|. +..+..+..+++..-|..- +.......+-+++|..+|++..
T Consensus 1003 LIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa~~---ia~iai~~~LyEEAF~ifkkf~~n~ 1078 (1666)
T KOG0985|consen 1003 LIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDAPD---IAEIAIENQLYEEAFAIFKKFDMNV 1078 (1666)
T ss_pred HHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCchh---HHHHHhhhhHHHHHHHHHHHhcccH
Confidence 888888776422 223334455555444443 2334444444443221110 1111122233333433333211
Q ss_pred ----------------------CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHH
Q 037713 199 ----------------------VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLEL 256 (610)
Q Consensus 199 ----------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~ 256 (610)
-.....|..+..+-.+.|...+|++-|-+. .|+..|.-++..+.+.|.++.
T Consensus 1079 ~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika-------dDps~y~eVi~~a~~~~~~ed 1151 (1666)
T KOG0985|consen 1079 SAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA-------DDPSNYLEVIDVASRTGKYED 1151 (1666)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc-------CCcHHHHHHHHHHHhcCcHHH
Confidence 013357889999999999999998877543 788889999999999999999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----------------------CChhHHHHHHHH
Q 037713 257 GKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR-----------------------KDVVSWTSIIVG 313 (610)
Q Consensus 257 a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----------------------~~~~~~~~li~~ 313 (610)
-..++..+.+..-+|.+ -+.||-+|++.+++.+-++++..-.. .++.-|..|...
T Consensus 1152 Lv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~T 1229 (1666)
T KOG0985|consen 1152 LVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLAST 1229 (1666)
T ss_pred HHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHH
Confidence 99988888887666654 46788899999988887666532110 134456666666
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 037713 314 TAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDE 393 (610)
Q Consensus 314 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 393 (610)
+...|++..|...-++. -+..||.-+-.+|...+.+..|. |.. .++.....-..-|+.-|-..|.+++
T Consensus 1230 LV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ-----iCG-L~iivhadeLeeli~~Yq~rGyFeE 1297 (1666)
T KOG0985|consen 1230 LVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ-----ICG-LNIIVHADELEELIEYYQDRGYFEE 1297 (1666)
T ss_pred HHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH-----hcC-ceEEEehHhHHHHHHHHHhcCcHHH
Confidence 66666666666554443 25567777777777666554432 221 1233344556678888888888888
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhh
Q 037713 394 AENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 394 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 469 (610)
-..+++.. |++. .-..|.-|.-.|++-+ +++-.+.++-.... ...--+++++.++..|.|..-++....+
T Consensus 1298 lIsl~Ea~LGLERAHMgmfTELaiLYskyk-p~km~EHl~LFwsR-----vNipKviRA~eqahlW~ElvfLY~~y~e 1369 (1666)
T KOG0985|consen 1298 LISLLEAGLGLERAHMGMFTELAILYSKYK-PEKMMEHLKLFWSR-----VNIPKVIRAAEQAHLWSELVFLYDKYEE 1369 (1666)
T ss_pred HHHHHHhhhchhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 88888766 5443 2334444444455443 45554444433321 1122466777777778777766665543
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.7e-05 Score=74.58 Aligned_cols=286 Identities=11% Similarity=-0.013 Sum_probs=197.5
Q ss_pred HHHHHHHHh--cCCHHHHHHHHhhCC-----CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhH-HHHHHH
Q 037713 175 TAMLSAYAR--SGRKKDAMEIFEQAP-----VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLV-LSSIVG 246 (610)
Q Consensus 175 ~~li~~~~~--~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t-~~~ll~ 246 (610)
...+.++++ .++-..|...|-... ..|+.....+...+...|+.++|+..|++.+..+ |+..+ ...-.-
T Consensus 198 s~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d---py~i~~MD~Ya~ 274 (564)
T KOG1174|consen 198 SKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN---PDNVEAMDLYAV 274 (564)
T ss_pred HHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC---hhhhhhHHHHHH
Confidence 344555543 344445554443322 3478888899999999999999999999987654 33322 222222
Q ss_pred HHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHhcCChHHH
Q 037713 247 ACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK---DVVSWTSIIVGTAQHGQAEET 323 (610)
Q Consensus 247 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A 323 (610)
...+.|+.+....+...+.... ..+..-|-.-.......++++.|+.+-++..+- ++..+-.-...+.+.|+.++|
T Consensus 275 LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A 353 (564)
T KOG1174|consen 275 LLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQA 353 (564)
T ss_pred HHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHH
Confidence 3356677777666666554432 112222222233444567888888888877653 455555555678889999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHhC
Q 037713 324 LALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL-DLLS-RSGHLDEAENLIKAM 401 (610)
Q Consensus 324 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~g~~~~A~~~~~~m 401 (610)
.-.|+..+... +-+...|..|+.+|...|.+.+|.-.-+...+. ++.+..+.+.+. ..+. ..---++|..++++.
T Consensus 354 ~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~ 430 (564)
T KOG1174|consen 354 VIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKS 430 (564)
T ss_pred HHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhh
Confidence 99999987752 236789999999999999999998887776663 344455554442 2222 223357788888887
Q ss_pred -CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHh
Q 037713 402 -PFEPD-EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMS 468 (610)
Q Consensus 402 -~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 468 (610)
.++|+ ....+.+..-|...|..+.+..++++.+...|++ ...+.|++.+...+.+.+|...+....
T Consensus 431 L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 431 LKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred hccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 77887 4456667777999999999999999999988865 788999999999999999988877664
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.4e-07 Score=83.11 Aligned_cols=164 Identities=10% Similarity=0.065 Sum_probs=131.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHH
Q 037713 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLL 385 (610)
Q Consensus 306 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 385 (610)
+...+.-+|.+.|+...|..-+++.++.... +..++..+...|.+.|..+.|.+.|+...+. -+-+-.+.|....-+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHH
Confidence 3455677888888888888888888876322 4667888888888888888888888888762 233456777788888
Q ss_pred HhcCCHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHH
Q 037713 386 SRSGHLDEAENLIKAMPFEP----DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461 (610)
Q Consensus 386 ~~~g~~~~A~~~~~~m~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 461 (610)
+..|++++|...|++.-..| -..+|..+.-+..+.|+.+.|...+++.++.+|+.+.+...+.+...+.|++..|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 88899999999998872233 25678788777888999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCC
Q 037713 462 KVRKLMSVMEV 472 (610)
Q Consensus 462 ~~~~~m~~~~~ 472 (610)
..++.....+.
T Consensus 194 ~~~~~~~~~~~ 204 (250)
T COG3063 194 LYLERYQQRGG 204 (250)
T ss_pred HHHHHHHhccc
Confidence 99988876554
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.87 E-value=8.5e-07 Score=90.04 Aligned_cols=191 Identities=14% Similarity=0.190 Sum_probs=90.1
Q ss_pred HhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 037713 248 CANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALY 327 (610)
Q Consensus 248 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 327 (610)
......+.+|..+++.+...... ..-|..+.+-|+..|+++.|.++|-+.. .++-.|..|.+.|++++|.++-
T Consensus 742 ai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla 814 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLA 814 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHH
Confidence 33444555555555544443211 1234445555555666666665555432 2334455555666666655554
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH
Q 037713 328 DEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDE 407 (610)
Q Consensus 328 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~ 407 (610)
.+.. |.......|..-..-.-..|++.+|.+++-.+ | .|+. -|.+|-+.|..++..++.++-.-..-.
T Consensus 815 ~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti----~-~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~ 882 (1636)
T KOG3616|consen 815 EECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITI----G-EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLH 882 (1636)
T ss_pred HHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEc----c-CchH-----HHHHHHhhCcchHHHHHHHHhChhhhh
Confidence 3322 22223333444444444555555555554332 1 2332 345555666666655555554111112
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHH
Q 037713 408 PTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRK 465 (610)
Q Consensus 408 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 465 (610)
.|...+..-+-..|+.+.|+..|-++ .-+..-.++|-.++.|++|.++-+
T Consensus 883 dt~~~f~~e~e~~g~lkaae~~flea--------~d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 883 DTHKHFAKELEAEGDLKAAEEHFLEA--------GDFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HHHHHHHHHHHhccChhHHHHHHHhh--------hhHHHHHHHhhhhhhHHHHHHHHh
Confidence 33334444455555655555554332 223444555555666666555433
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.8e-06 Score=75.57 Aligned_cols=305 Identities=11% Similarity=0.078 Sum_probs=148.3
Q ss_pred HHHHHHHhhcCCChHHHHHHHccCCCC---CcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHH-HHHHh
Q 037713 41 PNTLIDAYGKCDLVQYAHHLLEEMPQR---DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASL-VKACG 116 (610)
Q Consensus 41 ~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~l-l~~~~ 116 (610)
+++.+..+.+-.++++|.+++..-.++ +....+.|..+|....++..|-+.++++-. ..|...-|..- ...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q---l~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ---LHPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hChHHHHHHHHHHHHHH
Confidence 344444455556666666666544332 334455555666666666666666666655 34544443321 12333
Q ss_pred ccCCcHHHHHHHHHHHhcCCCCChhHHHHHH--H--HHHhCCChHHHHHHHHhcC-CCChhhHHHHHHHHHhcCCHHHHH
Q 037713 117 SLGATRLGKQVHACFVLSPFCDDDVVKSSLV--D--MYAKCGLPNNARAVFDSIK-LKNSVSWTAMLSAYARSGRKKDAM 191 (610)
Q Consensus 117 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li--~--~~~~~g~~~~A~~~~~~m~-~~~~~~~~~li~~~~~~g~~~~A~ 191 (610)
+.+.+..|..+...|... + ...+..+ . .....+++..++.+++..+ +.+..+.+.......+.|+.+.|.
T Consensus 90 ~A~i~ADALrV~~~~~D~---~--~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---P--ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred HhcccHHHHHHHHHhcCC---H--HHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHH
Confidence 445555566655554321 1 1111111 1 1123455555555555555 234444444444444555555555
Q ss_pred HHHhhCCCC----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhH-HHHHHHHHhccccHHHHHHHHHHHHH
Q 037713 192 EIFEQAPVR----NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLV-LSSIVGACANFAVLELGKQIHGLVIA 266 (610)
Q Consensus 192 ~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~ 266 (610)
+-|+...+- ....||..+ +..+.|++..|++...+..+.|++ ..+.. ......+- ....+.--..++...+
T Consensus 165 qkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r-~HPElgIGm~tegi-DvrsvgNt~~lh~Sal- 240 (459)
T KOG4340|consen 165 QKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIR-QHPELGIGMTTEGI-DVRSVGNTLVLHQSAL- 240 (459)
T ss_pred HHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhh-cCCccCccceeccC-chhcccchHHHHHHHH-
Confidence 555543321 223343332 223445555555555555555543 11100 00000000 0000000000000000
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 037713 267 LGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK-----DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341 (610)
Q Consensus 267 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 341 (610)
+..+|.-...+.+.|+++.|.+.+-.|+.+ |++|...+.-.- ..+++.+..+-+.-+.+... -...|
T Consensus 241 ------~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ET 312 (459)
T KOG4340|consen 241 ------VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPET 312 (459)
T ss_pred ------HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHH
Confidence 112222233456789999999999999853 677765543322 24555555555555555533 34678
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHh
Q 037713 342 FVGLIYACSHVGLVGKGRKLFKSM 365 (610)
Q Consensus 342 ~~~ll~a~~~~g~~~~a~~~~~~~ 365 (610)
|..++-.||+..-++.|-.++.+-
T Consensus 313 FANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 313 FANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred HHHHHHHHhhhHHHhHHHHHHhhC
Confidence 999999999999888888887543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.5e-05 Score=79.77 Aligned_cols=408 Identities=11% Similarity=-0.004 Sum_probs=242.6
Q ss_pred HHHHhhcCCChHHHHHHHccCCC---CCcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHh--cc
Q 037713 44 LIDAYGKCDLVQYAHHLLEEMPQ---RDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACG--SL 118 (610)
Q Consensus 44 li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~--~~ 118 (610)
=++.+.+.|++++|.+...++.. .|...+..=+-++.+.+++++|+.+.+.-.. ..-+.+-+ +=++|+ +.
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~---~~~~~~~~--fEKAYc~Yrl 92 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA---LLVINSFF--FEKAYCEYRL 92 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch---hhhcchhh--HHHHHHHHHc
Confidence 35677888999999998887763 3566677777889999999999965543221 11111111 345554 78
Q ss_pred CCcHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHH-hcCCHHHHHHHHhh
Q 037713 119 GATRLGKQVHACFVLSPFCDD-DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYA-RSGRKKDAMEIFEQ 196 (610)
Q Consensus 119 ~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~ 196 (610)
+..++|...+. |..++ ..+...-...+.+.|++++|..+|+.+...+...+...+.+-+ ..+-.-.+. +.+.
T Consensus 93 nk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~-~~q~ 166 (652)
T KOG2376|consen 93 NKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ-LLQS 166 (652)
T ss_pred ccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH-HHHh
Confidence 89999998887 33443 3366666678889999999999999997665544444333211 111111221 3444
Q ss_pred CCCCChhhHHHH---HHHHHhCCChHHHHHHHHHHHHcCCC-----CCC-H-------hHHHHHHHHHhccccHHHHHHH
Q 037713 197 APVRNLFLWTAL---VSGLVQSRNEIDAFYSFIEMRREGVD-----IVD-P-------LVLSSIVGACANFAVLELGKQI 260 (610)
Q Consensus 197 ~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~~~~-----~p~-~-------~t~~~ll~~~~~~~~~~~a~~~ 260 (610)
.+.....+|..+ ...++..|++.+|+++++...+.+.+ ..+ . ..-..+.-++...|+-++|.++
T Consensus 167 v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~i 246 (652)
T KOG2376|consen 167 VPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSI 246 (652)
T ss_pred ccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 444434444443 45678899999999999998332210 011 0 1122344456778999999999
Q ss_pred HHHHHHhCCCCc---hhHHHHHHHHHHhcCCHH-HHHHHHHhcCCCChhHH---------------HHHHHHHHhcCChH
Q 037713 261 HGLVIALGYESC---LFISNAIVDMYAKCSDII-AAKDIFGRMRRKDVVSW---------------TSIIVGTAQHGQAE 321 (610)
Q Consensus 261 ~~~~~~~~~~~~---~~~~~~li~~y~~~g~~~-~A~~~~~~~~~~~~~~~---------------~~li~~~~~~g~~~ 321 (610)
+..+++...... ....|.|+.+=....-++ .++..|+.........| +.++..| .+..+
T Consensus 247 y~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~ 324 (652)
T KOG2376|consen 247 YVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMD 324 (652)
T ss_pred HHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHH
Confidence 999998864332 223344443221111111 23333433332222111 2222222 23334
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhc--cCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 037713 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSH--VGLVGKGRKLFKSMIEDYGITPS-LQHYTCLLDLLSRSGHLDEAENLI 398 (610)
Q Consensus 322 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~--~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~ 398 (610)
.+.++-.... +..|. ..+.+++..+.+ ...+..+..++....+ +.+-+ ..+--.++......|+++.|.+++
T Consensus 325 q~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 325 QVRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred HHHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 4444433322 22333 344455544432 2246778888777765 33333 456677788889999999999998
Q ss_pred H--------hC-CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcC----CCC---CCcchHhHHHHhhhhcchhHHHH
Q 037713 399 K--------AM-PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSL----KPE---DPSSYILLSNVYASAAMWQHVSK 462 (610)
Q Consensus 399 ~--------~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~ 462 (610)
. .. .+.-.+.+...+..-+.+.++.+.|..++..++.- .+. -...+..++..-.+.|+-++|..
T Consensus 400 ~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s 479 (652)
T KOG2376|consen 400 SLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASS 479 (652)
T ss_pred HHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHH
Confidence 8 44 23334555666777788888888888888877631 121 12233445555567799999999
Q ss_pred HHHHHhh
Q 037713 463 VRKLMSV 469 (610)
Q Consensus 463 ~~~~m~~ 469 (610)
.++.+.+
T Consensus 480 ~leel~k 486 (652)
T KOG2376|consen 480 LLEELVK 486 (652)
T ss_pred HHHHHHH
Confidence 9999875
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.5e-07 Score=90.99 Aligned_cols=218 Identities=14% Similarity=0.063 Sum_probs=169.7
Q ss_pred hccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHH
Q 037713 249 ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLA 325 (610)
Q Consensus 249 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 325 (610)
.+.|++..|.-.|+..++.. +.+...|.-|...-+..++-..|+..+.+..+ .|....-+|.-.|...|.-.+|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 45677777777777777764 44677888888888888888888888887764 356777778888888999899999
Q ss_pred HHHHHHHcCCC--------CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037713 326 LYDEMVSAGVK--------PNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENL 397 (610)
Q Consensus 326 l~~~m~~~g~~--------p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 397 (610)
.++.-+....+ ++..+-.. ..+.....+....++|-.+....+..+|..++..|.-.|--.|.+++|...
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 98887654211 01000000 122223334556667777766567678899999999999999999999999
Q ss_pred HHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhh
Q 037713 398 IKAM-PFEPD-EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 398 ~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 469 (610)
|+.. .++|+ ..+||-|...++...+.++|+..|.+++++.|.-..+...|+-.|...|.++||.+.+-....
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9988 77785 678999999999999999999999999999999999999999999999999999998776554
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.4e-05 Score=78.86 Aligned_cols=331 Identities=13% Similarity=0.098 Sum_probs=177.6
Q ss_pred CCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCC--h--hhHHH
Q 037713 135 PFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK---NSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN--L--FLWTA 207 (610)
Q Consensus 135 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~--~~~~~ 207 (610)
.+..|..+|..|.-+...+|+++.+-+.|++...- ....|+.+...|.-+|.-..|..+.+.-..+. + .+--.
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 34556777777777777777777777777766532 45667777777777777777777776543221 2 22112
Q ss_pred HH-HH-HHhCCChHHHHHHHHHHHHc--CCC-CCCHhHHHHHHHHHhccc-----------cHHHHHHHHHHHHHhCCCC
Q 037713 208 LV-SG-LVQSRNEIDAFYSFIEMRRE--GVD-IVDPLVLSSIVGACANFA-----------VLELGKQIHGLVIALGYES 271 (610)
Q Consensus 208 li-~~-~~~~g~~~~A~~~~~~m~~~--~~~-~p~~~t~~~ll~~~~~~~-----------~~~~a~~~~~~~~~~~~~~ 271 (610)
|+ .. +-+.+..++++++-.+.... +.. ...+..+..+.-+|.... ...++.+.++..++.+..
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~- 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT- 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-
Confidence 22 12 22346667777776666551 110 022333333333333211 123444555555554321
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---------
Q 037713 272 CLFISNAIVDMYAKCSDIIAAKDIFGRMR----RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN--------- 338 (610)
Q Consensus 272 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--------- 338 (610)
|+.+.--+.--|+..++++.|.+...+.. ..+...|..+.-.+...+++.+|+.+.+...+. -|+
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E--~~~N~~l~~~~~ 554 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE--FGDNHVLMDGKI 554 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH--hhhhhhhchhhh
Confidence 22222223444666777777776665554 346777777777777778888888877766543 111
Q ss_pred ------------HHHHHHHHHHHh------c---cC--------------CHHHHHHHHHH----hH---HhcC------
Q 037713 339 ------------EVTFVGLIYACS------H---VG--------------LVGKGRKLFKS----MI---EDYG------ 370 (610)
Q Consensus 339 ------------~~t~~~ll~a~~------~---~g--------------~~~~a~~~~~~----~~---~~~~------ 370 (610)
..|...++...- . .| +..++.+.... +. +..+
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp 634 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLP 634 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccC
Confidence 011111111111 0 00 00000000000 00 0001
Q ss_pred ---CCC--C------HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCC
Q 037713 371 ---ITP--S------LQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLK 437 (610)
Q Consensus 371 ---~~~--~------~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 437 (610)
+.| + ...|....+.+.+.+..++|...+.+. ++.| ....|......+...|+.++|.+.|..++.++
T Consensus 635 ~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld 714 (799)
T KOG4162|consen 635 SSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD 714 (799)
T ss_pred cccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence 011 1 123445556666777777776655555 4444 24445555555667778888888888888888
Q ss_pred CCCCcchHhHHHHhhhhcchhHHHH--HHHHHh
Q 037713 438 PEDPSSYILLSNVYASAAMWQHVSK--VRKLMS 468 (610)
Q Consensus 438 p~~~~~~~~l~~~~~~~g~~~~a~~--~~~~m~ 468 (610)
|+++.....++.++.+.|+-.-|.+ +...+.
T Consensus 715 P~hv~s~~Ala~~lle~G~~~la~~~~~L~dal 747 (799)
T KOG4162|consen 715 PDHVPSMTALAELLLELGSPRLAEKRSLLSDAL 747 (799)
T ss_pred CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHH
Confidence 8888888888888888886665555 444443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.8e-07 Score=86.96 Aligned_cols=160 Identities=15% Similarity=0.142 Sum_probs=115.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc---
Q 037713 275 ISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSH--- 351 (610)
Q Consensus 275 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~--- 351 (610)
+......+|...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++..
T Consensus 104 ~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~ 178 (290)
T PF04733_consen 104 VQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLAT 178 (290)
T ss_dssp HHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHh
Confidence 3333445667788888888888765 56677777888899999999999999999864 334 444445554443
Q ss_pred -cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCch-hHHH
Q 037713 352 -VGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNT-EMGT 427 (610)
Q Consensus 352 -~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~-~~a~ 427 (610)
.+.+.+|..+|+++.+ ...+++.+.+.+..+....|++++|.+++++. ...| ++.+...++......|+. +.+.
T Consensus 179 g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~ 256 (290)
T PF04733_consen 179 GGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAE 256 (290)
T ss_dssp TTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred CchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHH
Confidence 3468899999999876 45678888888999999999999999988876 3344 456666777777777877 6788
Q ss_pred HHHHHHhcCCCCCC
Q 037713 428 RVANHLLSLKPEDP 441 (610)
Q Consensus 428 ~~~~~~~~~~p~~~ 441 (610)
+.+.++....|+.+
T Consensus 257 ~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 257 RYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHCHHHTTTSH
T ss_pred HHHHHHHHhCCCCh
Confidence 88888888888754
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.7e-06 Score=83.14 Aligned_cols=214 Identities=11% Similarity=0.074 Sum_probs=128.0
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh----------hHHHHH
Q 037713 241 LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDV----------VSWTSI 310 (610)
Q Consensus 241 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~----------~~~~~l 310 (610)
...+.++..+..+++.+.+-+....... .++.-++....+|...|.+.+....-+...+..- .....+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 3455566666777777888777777765 5666667777778888777766655554433211 122234
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCH--HHHHHHHHHHHhc
Q 037713 311 IVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSL--QHYTCLLDLLSRS 388 (610)
Q Consensus 311 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~ 388 (610)
..+|.+.++++.|+..|.+.......||..+ +....+++....+... -+.|.. ..-. =...+.+.
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~-kGne~Fk~ 371 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEERE-KGNEAFKK 371 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHH-HHHHHHhc
Confidence 4566667788888888888766545544322 1122233333322221 122222 1111 13445667
Q ss_pred CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHH
Q 037713 389 GHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKL 466 (610)
Q Consensus 389 g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 466 (610)
|++.+|...+.++ ...| |...|.....+|.+.|.+..|+.-.+..++++|+....|..=+.++....+|+.|.+.+..
T Consensus 372 gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 372 GDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred cCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777766 3334 4556666666677777777777777777777777666676666666666777777777666
Q ss_pred Hhh
Q 037713 467 MSV 469 (610)
Q Consensus 467 m~~ 469 (610)
-.+
T Consensus 452 ale 454 (539)
T KOG0548|consen 452 ALE 454 (539)
T ss_pred HHh
Confidence 544
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.81 E-value=7.7e-06 Score=84.56 Aligned_cols=125 Identities=16% Similarity=0.112 Sum_probs=88.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 037713 341 TFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPS-LQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSAC 417 (610)
Q Consensus 341 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 417 (610)
++..+...|...|++++|.++++..++. .|+ +..|..-...|-+.|++++|.+.++.. ...+ |..+-+.-...+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence 4455666777888888888888888762 444 678888888888888888888888777 3333 555555566667
Q ss_pred HhcCchhHHHHHHHHHhcCC--CCC-------CcchHhHHHHhhhhcchhHHHHHHHHHh
Q 037713 418 KHHRNTEMGTRVANHLLSLK--PED-------PSSYILLSNVYASAAMWQHVSKVRKLMS 468 (610)
Q Consensus 418 ~~~g~~~~a~~~~~~~~~~~--p~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 468 (610)
.+.|++++|.+.+......+ |.. ......-+.+|.+.|++..|.+-+..+.
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 88888888888887776443 211 1122356778888898888887666554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.2e-05 Score=84.86 Aligned_cols=439 Identities=13% Similarity=0.031 Sum_probs=268.4
Q ss_pred HHHHHHHHHHHhCCCCC-CchHHHHHHHhhcCCChHHHHHHHccCCC---CCcchHHHHHHHHHcCCCchHHHHHHHHhH
Q 037713 21 TVKTLHAQIIKLGLHQY-GPLPNTLIDAYGKCDLVQYAHHLLEEMPQ---RDHVSWASILTAYNQANLPQKTISIFSTML 96 (610)
Q Consensus 21 ~~~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 96 (610)
.+..++..+....+.++ ...|..|-..|....+...|.+.|+..-+ .+..++......|++..+++.|..+.-..-
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 34445555555555443 35688899999888899999999988654 467789999999999999999998843332
Q ss_pred HCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHH
Q 037713 97 ALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTA 176 (610)
Q Consensus 97 ~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 176 (610)
+......-...|....-.+...++...+..-|+...+.. |.|...|..|..+|.++|++..|.++|++...-++.++..
T Consensus 554 qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~ 632 (1238)
T KOG1127|consen 554 QKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYG 632 (1238)
T ss_pred hhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHH
Confidence 211011112223333344567788889999999888876 7788999999999999999999999998887554443332
Q ss_pred ---HHHHHHhcCCHHHHHHHHhhCCCC---------C-hhhHHHHHHHHHhCCChH-------HHHHHHHHHHHcCCCCC
Q 037713 177 ---MLSAYARSGRKKDAMEIFEQAPVR---------N-LFLWTALVSGLVQSRNEI-------DAFYSFIEMRREGVDIV 236 (610)
Q Consensus 177 ---li~~~~~~g~~~~A~~~~~~~~~~---------~-~~~~~~li~~~~~~g~~~-------~A~~~~~~m~~~~~~~p 236 (610)
....-+..|.+.+|...+..+... + ..++-.+...+.-.|-.. ++++.|.-....... .
T Consensus 633 ~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~-~ 711 (1238)
T KOG1127|consen 633 RFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQ-S 711 (1238)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhh-h
Confidence 222345667788887777654311 1 122222222222233322 333333322222211 2
Q ss_pred CHhHHHHHHHHHh-----------------------ccccH---H---HHHHHHHHHHHhCCCCchhHHHHHHHHHHh--
Q 037713 237 DPLVLSSIVGACA-----------------------NFAVL---E---LGKQIHGLVIALGYESCLFISNAIVDMYAK-- 285 (610)
Q Consensus 237 ~~~t~~~ll~~~~-----------------------~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~li~~y~~-- 285 (610)
+...|..+-.+|. ..+.. + .|-+.+.. ...+..+...|..|+.-|.+
T Consensus 712 ~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~--hlsl~~~~~~WyNLGinylr~f 789 (1238)
T KOG1127|consen 712 DRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIA--HLSLAIHMYPWYNLGINYLRYF 789 (1238)
T ss_pred hHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhH--HHHHhhccchHHHHhHHHHHHH
Confidence 3333333333222 11111 1 00000000 01111223444444444433
Q ss_pred --cC----CHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHH
Q 037713 286 --CS----DIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVG 356 (610)
Q Consensus 286 --~g----~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 356 (610)
+| +...|...+....+ .+..+||+|.-. ...|.+.-|...|-+-+... +-+..+|..+.-.|....+++
T Consensus 790 ~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E 867 (1238)
T KOG1127|consen 790 LLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFE 867 (1238)
T ss_pred HHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHH
Confidence 22 23356666665543 577888887665 66677777777777666553 336778888888888999999
Q ss_pred HHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCchhHHHH-
Q 037713 357 KGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-------PFEPDEPTWAALLSACKHHRNTEMGTR- 428 (610)
Q Consensus 357 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~ll~~~~~~g~~~~a~~- 428 (610)
.|...|..... -.+.+...|--........|+.-++..+|..- +--|+..-|..........|+.+.-+.
T Consensus 868 ~A~~af~~~qS--LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t 945 (1238)
T KOG1127|consen 868 HAEPAFSSVQS--LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINT 945 (1238)
T ss_pred HhhHHHHhhhh--cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHH
Confidence 99999988754 23334566665555566778888888888762 233555555544444555665555444
Q ss_pred ---------HHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHH
Q 037713 429 ---------VANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLM 467 (610)
Q Consensus 429 ---------~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 467 (610)
.+++.++..|++..+|...+......+.+.+|.+...+.
T Consensus 946 ~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 946 ARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred hhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344555678998899999999999999888887776554
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.7e-05 Score=78.78 Aligned_cols=380 Identities=12% Similarity=0.028 Sum_probs=213.9
Q ss_pred CCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHH
Q 037713 82 ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161 (610)
Q Consensus 82 ~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 161 (610)
.+++...+.+.+.++..- +-...|.....-.+...|+.++|.......++.. ..+.+.|..+.-.+-...++++|.+
T Consensus 20 ~kQYkkgLK~~~~iL~k~--~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKKF--PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHhHHHHHHHHHHhC--CccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHH
Confidence 456666666666665532 2222333333333445677777777666666544 3455667777666666777777777
Q ss_pred HHHhcC---CCChhhHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 037713 162 VFDSIK---LKNSVSWTAMLSAYARSGRKKDAMEIFEQAP---VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDI 235 (610)
Q Consensus 162 ~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 235 (610)
.|.... ..|...|.-+--.-++.|+++.....-.+.. ...-..|..+..++.-.|++..|..++++..+....+
T Consensus 97 cy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~ 176 (700)
T KOG1156|consen 97 CYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTS 176 (700)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 777654 2245555555555555666655554444333 2244678888888888888888888888887765444
Q ss_pred CCHhHHHHHHH------HHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHH
Q 037713 236 VDPLVLSSIVG------ACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR--KDVVSW 307 (610)
Q Consensus 236 p~~~t~~~ll~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~ 307 (610)
|+...+.-... .....|.++.+.+.+...... +......-..-.+.+.+.+++++|..++..+.. ||..-|
T Consensus 177 ~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Y 255 (700)
T KOG1156|consen 177 PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDY 255 (700)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHH
Confidence 66666554332 233455555555554433221 112223334455667788888888888888765 343433
Q ss_pred HHH-HHHHHhcCChHHHH-HHHHH----------------------------------HHHcCCCCCHHHHHHHHHHHhc
Q 037713 308 TSI-IVGTAQHGQAEETL-ALYDE----------------------------------MVSAGVKPNEVTFVGLIYACSH 351 (610)
Q Consensus 308 ~~l-i~~~~~~g~~~~A~-~l~~~----------------------------------m~~~g~~p~~~t~~~ll~a~~~ 351 (610)
+-. ..++.+-.+.-+++ .+|.. +.+.|++| +|..+.+-+-.
T Consensus 256 y~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~ 332 (700)
T KOG1156|consen 256 YEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKD 332 (700)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhc
Confidence 333 22332222222222 33333 33334332 22222222222
Q ss_pred cCCHHHHHHHHHHhHHhc-----CC------------CCCHH--HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HH
Q 037713 352 VGLVGKGRKLFKSMIEDY-----GI------------TPSLQ--HYTCLLDLLSRSGHLDEAENLIKAM-PFEPDEP-TW 410 (610)
Q Consensus 352 ~g~~~~a~~~~~~~~~~~-----~~------------~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~ 410 (610)
-...+ ++++.+..+ |- +|... ++-.++..|-+.|+++.|...++.. +-.|+.+ .|
T Consensus 333 p~k~~----~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly 408 (700)
T KOG1156|consen 333 PEKVA----FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELY 408 (700)
T ss_pred hhHhH----HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHH
Confidence 11111 222221110 11 34443 3455677788888888888888877 5455533 33
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhCCC
Q 037713 411 AALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEV 472 (610)
Q Consensus 411 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 472 (610)
..=.+.+...|+++.|...++++.+++-.|...-.--++-..++.+.++|.++....-..|.
T Consensus 409 ~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 409 LVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 33445577888888888888888888866644333455566778888888888777765554
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.2e-07 Score=90.98 Aligned_cols=244 Identities=10% Similarity=-0.009 Sum_probs=154.0
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 037713 211 GLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDII 290 (610)
Q Consensus 211 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 290 (610)
-+.-.|++..++.-.+ ....... .+......+.+++...|..+.+. .++.+.. .|.......+...+...++-+
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~-~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPE-NKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCH-HHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHhhhHHHHHHHhh-ccCCCch-hHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 3444566666665444 2111111 22334445555666666554322 2222222 444444444444333334556
Q ss_pred HHHHHHHhcC-CC---ChhHHH-HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 037713 291 AAKDIFGRMR-RK---DVVSWT-SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365 (610)
Q Consensus 291 ~A~~~~~~~~-~~---~~~~~~-~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 365 (610)
.+..-+++.. ++ +..++. .....+...|++++|++++.+- .+.......+..+.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666565443 22 112222 2234456679999999988653 35667777889999999999999999999
Q ss_pred HHhcCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC
Q 037713 366 IEDYGITPSLQ---HYTCLLDLLSRSGHLDEAENLIKAM--PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440 (610)
Q Consensus 366 ~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 440 (610)
.+ +..|.. ...+.+..+.-.+.+.+|..+|+++ ...+++.+.+.+..+....|++++|+++++++++.+|.+
T Consensus 158 ~~---~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~ 234 (290)
T PF04733_consen 158 QQ---IDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPND 234 (290)
T ss_dssp HC---CSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH
T ss_pred Hh---cCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCC
Confidence 64 344432 2333344444445799999999999 455788889999999999999999999999999999999
Q ss_pred CcchHhHHHHhhhhcch-hHHHHHHHHHhh
Q 037713 441 PSSYILLSNVYASAAMW-QHVSKVRKLMSV 469 (610)
Q Consensus 441 ~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~ 469 (610)
+.+...++-+....|+. +.+.+.+..++.
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 99999999998999988 667788887764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.3e-05 Score=75.06 Aligned_cols=380 Identities=11% Similarity=0.085 Sum_probs=229.6
Q ss_pred HHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHH-HhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCC
Q 037713 76 LTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKA-CGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCG 154 (610)
Q Consensus 76 i~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 154 (610)
+.-+..+.++..|+.+++--...+ .-........|.- +...|+.++|...+..+.... .++..++-.|.-.+.-.|
T Consensus 29 Ledfls~rDytGAislLefk~~~~--~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLD--REEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLG 105 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccc--hhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHH
Confidence 455667789999999988765433 1122244444544 468999999999999988765 666666766777777789
Q ss_pred ChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 037713 155 LPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVD 234 (610)
Q Consensus 155 ~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 234 (610)
.+.+|..+-...++ +...-..|...-.+.++-++-..+-+.+... ..---+|.+.....-.+++|+++|......+
T Consensus 106 ~Y~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn-- 181 (557)
T KOG3785|consen 106 QYIEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN-- 181 (557)
T ss_pred HHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--
Confidence 99999998766542 2233334445556667766655555444322 1222234444444557899999999998876
Q ss_pred CCCHhHHHHHHH-HHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh--cCCHHHH--HHHHHhcC---------
Q 037713 235 IVDPLVLSSIVG-ACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAK--CSDIIAA--KDIFGRMR--------- 300 (610)
Q Consensus 235 ~p~~~t~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~--~g~~~~A--~~~~~~~~--------- 300 (610)
|+-...+.-+. +|.+..-++.+.+++..-.+. ++.+....|....-..+ .|+..++ ..+-+...
T Consensus 182 -~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l 259 (557)
T KOG3785|consen 182 -PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYL 259 (557)
T ss_pred -hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHH
Confidence 66666554444 456777778888877766554 23333444433332222 2222111 11111111
Q ss_pred ----------------------CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-----hccC
Q 037713 301 ----------------------RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYAC-----SHVG 353 (610)
Q Consensus 301 ----------------------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~-----~~~g 353 (610)
+--+.+--.++--|.+.++..+|..+.+++.- ..|-......+..+- ....
T Consensus 260 ~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSre 337 (557)
T KOG3785|consen 260 CRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSRE 337 (557)
T ss_pred HHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHH
Confidence 11122233345557788999999988776532 234443333333221 1222
Q ss_pred CHHHHHHHHHHhHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCchhHHHHHH
Q 037713 354 LVGKGRKLFKSMIEDYGITPSL-QHYTCLLDLLSRSGHLDEAENLIKAMP--FEPDEPTWAALLSACKHHRNTEMGTRVA 430 (610)
Q Consensus 354 ~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 430 (610)
.+.-|.+.|+..-+. +..-|. .--.++...+.-..++++.+-.++.+. +..|...-..+..+.+..|++.+|+++|
T Consensus 338 HlKiAqqffqlVG~S-a~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf 416 (557)
T KOG3785|consen 338 HLKIAQQFFQLVGES-ALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELF 416 (557)
T ss_pred HHHHHHHHHHHhccc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHH
Confidence 355677777655432 333332 334456666666677888888777761 2233333445788899999999999999
Q ss_pred HHHhcCCCCCCcch-HhHHHHhhhhcchhHHHHHHHHH
Q 037713 431 NHLLSLKPEDPSSY-ILLSNVYASAAMWQHVSKVRKLM 467 (610)
Q Consensus 431 ~~~~~~~p~~~~~~-~~l~~~~~~~g~~~~a~~~~~~m 467 (610)
-++...+-.|...| ..|++.|.+.++...|..++-.+
T Consensus 417 ~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 417 IRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred hhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 88876664444444 47888999999998887765544
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.9e-06 Score=74.24 Aligned_cols=185 Identities=10% Similarity=0.003 Sum_probs=97.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 037713 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYA 284 (610)
Q Consensus 205 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 284 (610)
...|.-+|.+.|++..|..-+++.++... .+..++..+...|.+.|..+.|.+-|+.+++.. +.+-.+.|.....+|
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DP--s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDP--SYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 44566678888888888888888877662 455566666666666666666666666666553 223445555555555
Q ss_pred hcCCHHHHHHHHHhcCC-C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHH
Q 037713 285 KCSDIIAAKDIFGRMRR-K----DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGR 359 (610)
Q Consensus 285 ~~g~~~~A~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 359 (610)
..|++++|...|++... | -..+|..+.-+..+.|+.+.|.+.|++-.+.... ...+...+.......|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 55555555555555432 2 1234444444444555555555555554443211 2233334444444444444444
Q ss_pred HHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037713 360 KLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAE 395 (610)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 395 (610)
.+++..... ..++..+.-..|..-.+.|+-+.|-
T Consensus 194 ~~~~~~~~~--~~~~A~sL~L~iriak~~gd~~~a~ 227 (250)
T COG3063 194 LYLERYQQR--GGAQAESLLLGIRIAKRLGDRAAAQ 227 (250)
T ss_pred HHHHHHHhc--ccccHHHHHHHHHHHHHhccHHHHH
Confidence 444444332 2244444444444444444444433
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.75 E-value=9.5e-06 Score=82.69 Aligned_cols=215 Identities=16% Similarity=0.153 Sum_probs=141.8
Q ss_pred HHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHH
Q 037713 180 AYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQ 259 (610)
Q Consensus 180 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~ 259 (610)
.+.+.|+++.|..-|-+.. ..--.|.+-.....|.+|+.+++.++... .-.-.|..+..-|+..|+++.|++
T Consensus 715 hl~~~~q~daainhfiea~-----~~~kaieaai~akew~kai~ildniqdqk---~~s~yy~~iadhyan~~dfe~ae~ 786 (1636)
T KOG3616|consen 715 HLEQIGQLDAAINHFIEAN-----CLIKAIEAAIGAKEWKKAISILDNIQDQK---TASGYYGEIADHYANKGDFEIAEE 786 (1636)
T ss_pred HHHHHHhHHHHHHHHHHhh-----hHHHHHHHHhhhhhhhhhHhHHHHhhhhc---cccccchHHHHHhccchhHHHHHH
Confidence 3455666777766664421 11123455677888999999999888765 345568888999999999999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 037713 260 IHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK--DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKP 337 (610)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 337 (610)
+|.+. ..++--|++|.+.|++++|.++-.+...| .+..|-+-..-+-.+|++.+|.++|-... .|
T Consensus 787 lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p 853 (1636)
T KOG3616|consen 787 LFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EP 853 (1636)
T ss_pred HHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cc
Confidence 98653 24566789999999999999998888766 45567776777788888888888775442 34
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 037713 338 NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSAC 417 (610)
Q Consensus 338 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~ 417 (610)
+. .|..|-+.|..+..+++.++--. ..-..+.-.+..-|...|++.+|++-|-+.+ -|.+-++.|
T Consensus 854 ~~-----aiqmydk~~~~ddmirlv~k~h~----d~l~dt~~~f~~e~e~~g~lkaae~~flea~------d~kaavnmy 918 (1636)
T KOG3616|consen 854 DK-----AIQMYDKHGLDDDMIRLVEKHHG----DHLHDTHKHFAKELEAEGDLKAAEEHFLEAG------DFKAAVNMY 918 (1636)
T ss_pred hH-----HHHHHHhhCcchHHHHHHHHhCh----hhhhHHHHHHHHHHHhccChhHHHHHHHhhh------hHHHHHHHh
Confidence 43 45566677777776666544311 1112344455566666777777776665543 234444445
Q ss_pred HhcCchhHHHHHH
Q 037713 418 KHHRNTEMGTRVA 430 (610)
Q Consensus 418 ~~~g~~~~a~~~~ 430 (610)
...+-++.|-++.
T Consensus 919 k~s~lw~dayria 931 (1636)
T KOG3616|consen 919 KASELWEDAYRIA 931 (1636)
T ss_pred hhhhhHHHHHHHH
Confidence 5555555544443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.75 E-value=0.00016 Score=76.66 Aligned_cols=211 Identities=13% Similarity=0.131 Sum_probs=129.2
Q ss_pred CChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 037713 154 GLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGV 233 (610)
Q Consensus 154 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 233 (610)
+.+|+|.+.-++..+ ...|+.+..+-.+.|.+.+|++-|-+ ..|+..|..++....+.|.|++-.+.+...++..-
T Consensus 1089 ~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyik--adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~ 1164 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIK--ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR 1164 (1666)
T ss_pred hhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHh--cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc
Confidence 344444444444433 34677777777777777777776654 34556777777777788888777777766665543
Q ss_pred CCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchh--------------------------HHHHHHHHHHhcC
Q 037713 234 DIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLF--------------------------ISNAIVDMYAKCS 287 (610)
Q Consensus 234 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------------------------~~~~li~~y~~~g 287 (610)
. |. .=+.++-+|++.+++.+.+.+.. -|+.. -|..|...+...|
T Consensus 1165 E-~~--id~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~Lg 1234 (1666)
T KOG0985|consen 1165 E-PY--IDSELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLG 1234 (1666)
T ss_pred C-cc--chHHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3 33 23455666666666555444331 23333 3344444444555
Q ss_pred CHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 037713 288 DIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE 367 (610)
Q Consensus 288 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 367 (610)
+++.|...-.+ ..++.+|-..-.+|...+.+.-| +|-...+.....-..-|+.-|-..|-+++.+.+++...
T Consensus 1235 eyQ~AVD~aRK--Ans~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L- 1306 (1666)
T KOG0985|consen 1235 EYQGAVDAARK--ANSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL- 1306 (1666)
T ss_pred HHHHHHHHhhh--ccchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh-
Confidence 55544433222 13677888888888776665433 23333344456667789999999999999999988763
Q ss_pred hcCCC-CCHHHHHHHHHHHHhc
Q 037713 368 DYGIT-PSLQHYTCLLDLLSRS 388 (610)
Q Consensus 368 ~~~~~-~~~~~~~~li~~~~~~ 388 (610)
|++ .....|+-|.-.|++-
T Consensus 1307 --GLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1307 --GLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred --chhHHHHHHHHHHHHHHHhc
Confidence 443 3456777777777764
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2e-05 Score=73.58 Aligned_cols=289 Identities=12% Similarity=0.087 Sum_probs=130.3
Q ss_pred HHHHHHhCCChHHHHHHHHhcCCCChhhHHHHH---HHHHhcCCHHHHHHHHhhCCCCChhhHHHHH---HHHHhCCChH
Q 037713 146 LVDMYAKCGLPNNARAVFDSIKLKNSVSWTAML---SAYARSGRKKDAMEIFEQAPVRNLFLWTALV---SGLVQSRNEI 219 (610)
Q Consensus 146 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~ 219 (610)
|...+...|++.+|+.-|....+-|+..|.++. ..|...|+-..|+.-|+++.+..+.-+.+-+ ..+.++|.++
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele 123 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELE 123 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHH
Confidence 333444444555555555544444444444332 2344444444444444443322222222211 2344555555
Q ss_pred HHHHHHHHHHHcCCCC-----------C--CHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 037713 220 DAFYSFIEMRREGVDI-----------V--DPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKC 286 (610)
Q Consensus 220 ~A~~~~~~m~~~~~~~-----------p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 286 (610)
+|..=|+..++..... + ........+..+...|+...+......+++.. +.|...+..-..+|...
T Consensus 124 ~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~ 202 (504)
T KOG0624|consen 124 QAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAE 202 (504)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhc
Confidence 5555555555443100 0 00111222333444555555555555555543 34555555566666666
Q ss_pred CCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH----HHHH---------HHHHh
Q 037713 287 SDIIAAKDIFGRMR---RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT----FVGL---------IYACS 350 (610)
Q Consensus 287 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t----~~~l---------l~a~~ 350 (610)
|++..|+.=+.... ..++...--+-..+-..|+.+.++...++-.+ +.||... |..| .....
T Consensus 203 ~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~i 280 (504)
T KOG0624|consen 203 GEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAI 280 (504)
T ss_pred CcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666654444332 33455555555555566666666665555544 2444321 1000 00111
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCch
Q 037713 351 HVGLVGKGRKLFKSMIEDYGITPS-----LQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD-EPTWAALLSACKHHRNT 423 (610)
Q Consensus 351 ~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~ 423 (610)
..+.+.++.+..+...+. .|. ...+..+-.+|...|++.+|++.-.+. .+.|| ..++.--..+|.....+
T Consensus 281 e~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~Y 357 (504)
T KOG0624|consen 281 EEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMY 357 (504)
T ss_pred hhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHH
Confidence 223333333333333331 222 122333444445555555555555444 44443 44454455555555555
Q ss_pred hHHHHHHHHHhcCCCCC
Q 037713 424 EMGTRVANHLLSLKPED 440 (610)
Q Consensus 424 ~~a~~~~~~~~~~~p~~ 440 (610)
+.|+.-|+++.+.++++
T Consensus 358 D~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 358 DDAIHDYEKALELNESN 374 (504)
T ss_pred HHHHHHHHHHHhcCccc
Confidence 55665555555555554
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.1e-05 Score=79.53 Aligned_cols=256 Identities=10% Similarity=-0.036 Sum_probs=141.4
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHh----ccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 037713 211 GLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA----NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKC 286 (610)
Q Consensus 211 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 286 (610)
.+...|++++|.+.+++..+... .|...+.. ...+. ..+..+.+.+.... .....+........+...+...
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~P--~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~ 127 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDYP--RDLLALKL-HLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEA 127 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCC--CcHHHHHH-hHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHc
Confidence 45566777777777777666541 23333331 11121 22333334433333 1111122233444556677778
Q ss_pred CCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHhccCCHHHHHH
Q 037713 287 SDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGV-KPNE--VTFVGLIYACSHVGLVGKGRK 360 (610)
Q Consensus 287 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~~ 360 (610)
|++++|...+++..+ .+...+..+...+...|++++|..++++...... .|+. ..|..+...+...|++++|..
T Consensus 128 G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 207 (355)
T cd05804 128 GQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA 207 (355)
T ss_pred CCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH
Confidence 888888888877753 3456677777788888888888888887766422 1232 234466677778888888888
Q ss_pred HHHHhHHhcCCCCCHHHH-H--HHHHHHHhcCCHHHHHHH---HHhC-CCCC---CHHHHHHHHHHHHhcCchhHHHHHH
Q 037713 361 LFKSMIEDYGITPSLQHY-T--CLLDLLSRSGHLDEAENL---IKAM-PFEP---DEPTWAALLSACKHHRNTEMGTRVA 430 (610)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~-~--~li~~~~~~g~~~~A~~~---~~~m-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~ 430 (610)
+++.........+..... + .++.-+...|..+.+.+. ...- +..| ..........++...|+.+.|...+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L 287 (355)
T cd05804 208 IYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLL 287 (355)
T ss_pred HHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHH
Confidence 888775321111222111 1 223333334432222222 1111 1101 1122224555577888888898888
Q ss_pred HHHhcCC-C--------CCCcchHhHHHHhhhhcchhHHHHHHHHHhhC
Q 037713 431 NHLLSLK-P--------EDPSSYILLSNVYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 431 ~~~~~~~-p--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 470 (610)
+.+.... . .........+.++...|++++|.+.+......
T Consensus 288 ~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 288 AALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8776322 1 12344456677788999999999988776543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.67 E-value=0.0001 Score=74.48 Aligned_cols=199 Identities=11% Similarity=-0.090 Sum_probs=94.8
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHH-HHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 037713 71 SWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASL-VKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDM 149 (610)
Q Consensus 71 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 149 (610)
.|..+...+...|+++.+...+....+.....++......+ ...+...|+++.|...++.+++.. |.|...+.. ...
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~ 85 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHH
Confidence 45555556666677777666666655432112222222111 122345677788887777777653 344433332 112
Q ss_pred HHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCChHHHHHHHH
Q 037713 150 YAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR---NLFLWTALVSGLVQSRNEIDAFYSFI 226 (610)
Q Consensus 150 ~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~ 226 (610)
+...|+. .+..+.+.+.++..... .......+...+...|++++|.+.++
T Consensus 86 ~~~~~~~---------------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 138 (355)
T cd05804 86 AFGLGDF---------------------------SGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAAR 138 (355)
T ss_pred HHHhccc---------------------------ccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 2222221 12222223333221111 11222333445556666666666666
Q ss_pred HHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCC-CCch--hHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 037713 227 EMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGY-ESCL--FISNAIVDMYAKCSDIIAAKDIFGRMR 300 (610)
Q Consensus 227 ~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~li~~y~~~g~~~~A~~~~~~~~ 300 (610)
+..+... .+...+..+..++...|++++|...+....+... .++. ..+..+...+...|++++|..+|++..
T Consensus 139 ~al~~~p--~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 139 RALELNP--DDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHhhCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 6665441 3444445555555555555555555555544321 1111 223345556666666666666666653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.3e-05 Score=86.87 Aligned_cols=321 Identities=11% Similarity=-0.005 Sum_probs=199.0
Q ss_pred HHHhCCChHHHHHHHHhcCC----CChhhHHHHHHHHHhcCCHHHHHHHHhhCC----CCC------h--hhHHHHHHHH
Q 037713 149 MYAKCGLPNNARAVFDSIKL----KNSVSWTAMLSAYARSGRKKDAMEIFEQAP----VRN------L--FLWTALVSGL 212 (610)
Q Consensus 149 ~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~------~--~~~~~li~~~ 212 (610)
.....|+++.+..+++.++. .+..........+...|++++|...+.... ..+ . .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 44556777777777777642 123333334445567788888877776432 111 1 1112233445
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCCH----hHHHHHHHHHhccccHHHHHHHHHHHHHhCCC-----CchhHHHHHHHHH
Q 037713 213 VQSRNEIDAFYSFIEMRREGVDIVDP----LVLSSIVGACANFAVLELGKQIHGLVIALGYE-----SCLFISNAIVDMY 283 (610)
Q Consensus 213 ~~~g~~~~A~~~~~~m~~~~~~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~li~~y 283 (610)
...|++++|...+++....-.. .+. .....+...+...|+++.|...+..+....-. ........+...+
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPL-TWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 6789999999999887763211 222 23344555567788999998888877654211 1123455667778
Q ss_pred HhcCCHHHHHHHHHhcCC-------C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCC--HHHHHHHHHH
Q 037713 284 AKCSDIIAAKDIFGRMRR-------K----DVVSWTSIIVGTAQHGQAEETLALYDEMVSA--GVKPN--EVTFVGLIYA 348 (610)
Q Consensus 284 ~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~--~~t~~~ll~a 348 (610)
...|++++|...+++... + ....+..+...+...|++++|...+++.... ...+. ..++..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 889999999888776542 1 1223445555667789999999998887542 11122 3344455667
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHhCCC-C-CCH----HHHHHHHHHH
Q 037713 349 CSHVGLVGKGRKLFKSMIEDYGITPSLQHY-----TCLLDLLSRSGHLDEAENLIKAMPF-E-PDE----PTWAALLSAC 417 (610)
Q Consensus 349 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~-~-p~~----~~~~~ll~~~ 417 (610)
....|+.++|.+.++..............+ ...+..+...|+.+.|.+.+..... . ... ..+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 778899999999888875421111111111 1122445568899999998877621 1 111 1134556668
Q ss_pred HhcCchhHHHHHHHHHhcCC------CCCCcchHhHHHHhhhhcchhHHHHHHHHHhhC
Q 037713 418 KHHRNTEMGTRVANHLLSLK------PEDPSSYILLSNVYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 418 ~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 470 (610)
...|+.++|...++++.... +....++..++.+|.+.|+.++|...+....+.
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88899999999999887542 112345667888899999999999888887653
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.60 E-value=7.3e-08 Score=58.97 Aligned_cols=33 Identities=33% Similarity=0.445 Sum_probs=26.0
Q ss_pred CCCCChhHHHHHHHHHHhCCChHHHHHHHHhcC
Q 037713 135 PFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIK 167 (610)
Q Consensus 135 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 167 (610)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888877774
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.3e-06 Score=78.98 Aligned_cols=181 Identities=8% Similarity=-0.024 Sum_probs=110.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-h---hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHH
Q 037713 272 CLFISNAIVDMYAKCSDIIAAKDIFGRMRR--KD-V---VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE--VTFV 343 (610)
Q Consensus 272 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~ 343 (610)
....+..+...|.+.|++++|...|+++.. |+ . .+|..+..++...|++++|+..++++.+....... .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 344556666667777777777777776653 21 1 35566666777777777777777777654221111 1344
Q ss_pred HHHHHHhcc--------CCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 037713 344 GLIYACSHV--------GLVGKGRKLFKSMIEDYGITPS-LQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALL 414 (610)
Q Consensus 344 ~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll 414 (610)
.+..++... |+.++|.+.|+.+.+. .|+ ...+..+..... ..... ......+.
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~~a 173 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNRL-----------AGKELYVA 173 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHHH-----------HHHHHHHH
Confidence 444444443 5566677777666653 222 222221111100 00000 00112445
Q ss_pred HHHHhcCchhHHHHHHHHHhcCCCCC---CcchHhHHHHhhhhcchhHHHHHHHHHhhC
Q 037713 415 SACKHHRNTEMGTRVANHLLSLKPED---PSSYILLSNVYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 415 ~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 470 (610)
..+...|+++.|...++++++..|++ +..+..++.+|.+.|++++|...++.+...
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56888999999999999999887765 368889999999999999999998887643
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.00033 Score=80.42 Aligned_cols=323 Identities=9% Similarity=0.009 Sum_probs=193.3
Q ss_pred hccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCC----CC---h-----hhHHHHHHHHHh
Q 037713 116 GSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKL----KN---S-----VSWTAMLSAYAR 183 (610)
Q Consensus 116 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~---~-----~~~~~li~~~~~ 183 (610)
...|+.+.+...+..+.......+..........+...|++++|...++.... .+ . .....+...+..
T Consensus 385 ~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 464 (903)
T PRK04841 385 FNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN 464 (903)
T ss_pred HhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence 34566666555555442111122222334444555667777777777765421 11 1 111122334557
Q ss_pred cCCHHHHHHHHhhCCC----CCh----hhHHHHHHHHHhCCChHHHHHHHHHHHHcCC--CCCC--HhHHHHHHHHHhcc
Q 037713 184 SGRKKDAMEIFEQAPV----RNL----FLWTALVSGLVQSRNEIDAFYSFIEMRREGV--DIVD--PLVLSSIVGACANF 251 (610)
Q Consensus 184 ~g~~~~A~~~~~~~~~----~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~p~--~~t~~~ll~~~~~~ 251 (610)
.|++++|...+++... .+. ..++.+...+...|++++|...+.+...... .++. ..++..+...+...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 7888888877766432 121 2445566667788899888888887764211 1022 23455566677888
Q ss_pred ccHHHHHHHHHHHHHh----CCC--C-chhHHHHHHHHHHhcCCHHHHHHHHHhcCC------C--ChhHHHHHHHHHHh
Q 037713 252 AVLELGKQIHGLVIAL----GYE--S-CLFISNAIVDMYAKCSDIIAAKDIFGRMRR------K--DVVSWTSIIVGTAQ 316 (610)
Q Consensus 252 ~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~------~--~~~~~~~li~~~~~ 316 (610)
|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+... + ....+..+...+..
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA 624 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence 9999888887776553 221 1 234455666777778999999888877642 1 13344456667778
Q ss_pred cCChHHHHHHHHHHHHc----CCCCCHHHH--HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC---HHHHHHHHHHHHh
Q 037713 317 HGQAEETLALYDEMVSA----GVKPNEVTF--VGLIYACSHVGLVGKGRKLFKSMIEDYGITPS---LQHYTCLLDLLSR 387 (610)
Q Consensus 317 ~g~~~~A~~l~~~m~~~----g~~p~~~t~--~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~ 387 (610)
.|+.++|.+.+++.... +..+..... ...+..+...|+.+.|.+++...... ..... ...+..+..++..
T Consensus 625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHHHH
Confidence 99999999988887542 111111111 11224445578999999887765431 11111 1124567778889
Q ss_pred cCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCC
Q 037713 388 SGHLDEAENLIKAM-------PFEPD-EPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439 (610)
Q Consensus 388 ~g~~~~A~~~~~~m-------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 439 (610)
.|+.++|...+++. +..++ ..+...+..++...|+.++|...+.+++++...
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 99999998888776 22222 234555666688999999999999999877643
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.00032 Score=69.86 Aligned_cols=234 Identities=12% Similarity=0.051 Sum_probs=156.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCC--c----hhHHHH
Q 037713 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYES--C----LFISNA 278 (610)
Q Consensus 205 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~~~ 278 (610)
.-.+.++..+..+++.|++-+....... -+..-++....++...|........-...++.|.+. + ......
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~---~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA---TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh---hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4456666777777888888887777654 355556666677777777777666666655554321 0 111222
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCC--ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCH
Q 037713 279 IVDMYAKCSDIIAAKDIFGRMRRK--DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE-VTFVGLIYACSHVGLV 355 (610)
Q Consensus 279 li~~y~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~ 355 (610)
+..+|.+.++++.|...|.+...+ +.. ...+....++++.......-. .|.. .-.-.-.+.+.+.|++
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~-------~ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPD-------LLSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHH-------HHHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCH
Confidence 445778888999999999886532 211 122234455555555544432 3332 1122236678889999
Q ss_pred HHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHH
Q 037713 356 GKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD-EPTWAALLSACKHHRNTEMGTRVANHL 433 (610)
Q Consensus 356 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~ 433 (610)
..|...|.++++. .+-|...|..-.-+|.+.|.+..|+.-.+.. ...|+ ...|.-=..++....+++.|.+.|++.
T Consensus 375 ~~Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 375 PEAVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred HHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999884 4667899999999999999999998876655 44554 344544555667778999999999999
Q ss_pred hcCCCCCCcchHhHHHHhh
Q 037713 434 LSLKPEDPSSYILLSNVYA 452 (610)
Q Consensus 434 ~~~~p~~~~~~~~l~~~~~ 452 (610)
++.+|++...-..+.+.+.
T Consensus 453 le~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 453 LELDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HhcCchhHHHHHHHHHHHH
Confidence 9999988665555555444
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.8e-07 Score=57.22 Aligned_cols=32 Identities=34% Similarity=0.613 Sum_probs=23.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037713 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401 (610)
Q Consensus 370 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 401 (610)
|+.||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 66777777777777777777777777777776
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.00037 Score=72.50 Aligned_cols=259 Identities=9% Similarity=0.009 Sum_probs=162.0
Q ss_pred CCchHHHHH--HHhhcCCChHHHHHHHccCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhHHCCC--------CCCChh
Q 037713 37 YGPLPNTLI--DAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDK--------LQPDHF 106 (610)
Q Consensus 37 ~~~~~~~li--~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--------~~pd~~ 106 (610)
|+.+-..++ +.|.--|+.+.|.+-.+.+. +-..|..|.+.+++..+.+-|.-.+-.|....+ ..|+ .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e 801 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-E 801 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-c
Confidence 555556665 45677899999988777664 345699999999998888877766665543111 1222 1
Q ss_pred hHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCC-ChhhHHHHHHHHHhcC
Q 037713 107 VFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSAYARSG 185 (610)
Q Consensus 107 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~~g 185 (610)
+=..+.-.....|.+++|+.++.+..+.. .|=..|-..|.+++|.++-+.=..- =..||..-..-+-..+
T Consensus 802 ~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARR 872 (1416)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhc
Confidence 21222223356788999999998877643 3456777889999988876532211 1235656666666778
Q ss_pred CHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHH
Q 037713 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVI 265 (610)
Q Consensus 186 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 265 (610)
+.+.|++.|++...+--.....|. .++.....+.+.+ .|+..|.--..-.-..|+.+.|..+|..+.
T Consensus 873 Di~~AleyyEK~~~hafev~rmL~------e~p~~~e~Yv~~~-------~d~~L~~WWgqYlES~GemdaAl~~Y~~A~ 939 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGVHAFEVFRMLK------EYPKQIEQYVRRK-------RDESLYSWWGQYLESVGEMDAALSFYSSAK 939 (1416)
T ss_pred cHHHHHHHHHhcCChHHHHHHHHH------hChHHHHHHHHhc-------cchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 888888888875433111111110 0111111111111 344555555555666788888888877665
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 037713 266 ALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMV 331 (610)
Q Consensus 266 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 331 (610)
. |-+++...|-.|+.++|-++-++ ..|..+...+...|-..|++.+|...|.+.+
T Consensus 940 D---------~fs~VrI~C~qGk~~kAa~iA~e--sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 940 D---------YFSMVRIKCIQGKTDKAARIAEE--SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred h---------hhhheeeEeeccCchHHHHHHHh--cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 4 44566666777888888777665 3456666677788888888888888887654
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00025 Score=66.48 Aligned_cols=306 Identities=9% Similarity=0.024 Sum_probs=176.7
Q ss_pred HHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHH---HHHhccCCcHHHHHHHHHHHhcCCCCChhH-HHHHHHHH
Q 037713 75 ILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLV---KACGSLGATRLGKQVHACFVLSPFCDDDVV-KSSLVDMY 150 (610)
Q Consensus 75 li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~~ 150 (610)
+-..+...|++..|+.-|...++ ..|+ .|.++. ..|...|....|..-+...++. .||-.. --.-...+
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve---~dp~--~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVE---GDPN--NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHc---CCch--hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhh
Confidence 44455556666666666666654 2232 333332 2344555555555555555543 344221 11122345
Q ss_pred HhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 037713 151 AKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRR 230 (610)
Q Consensus 151 ~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 230 (610)
.+.|.++.|..-|+.+.+.++. -+....++.+.-..++-+. ....+..+..+|+...|++....+++
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s-~~~~~eaqskl~~~~e~~~------------l~~ql~s~~~~GD~~~ai~~i~~llE 183 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPS-NGLVLEAQSKLALIQEHWV------------LVQQLKSASGSGDCQNAIEMITHLLE 183 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCC-cchhHHHHHHHHhHHHHHH------------HHHHHHHHhcCCchhhHHHHHHHHHh
Confidence 5666666666666655432210 0001111111111111111 11234455667777777777777776
Q ss_pred cCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChh---
Q 037713 231 EGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR--KDVV--- 305 (610)
Q Consensus 231 ~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~--- 305 (610)
.. |-|...+..-..+|...|.+..|..-+..+.+..-.. ....--+-..+...|+.+.++....+..+ ||-.
T Consensus 184 i~--~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~Dn-Te~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf 260 (504)
T KOG0624|consen 184 IQ--PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDN-TEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCF 260 (504)
T ss_pred cC--cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccc-hHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHH
Confidence 54 3577777777777777777777776666666654333 33333455666677777777777777654 3211
Q ss_pred -HHHHH---------HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHhccCCHHHHHHHHHHhHHhcCCC
Q 037713 306 -SWTSI---------IVGTAQHGQAEETLALYDEMVSAGVKPNEVTF---VGLIYACSHVGLVGKGRKLFKSMIEDYGIT 372 (610)
Q Consensus 306 -~~~~l---------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 372 (610)
.|-.+ +......+++.++++-.+...+.......++| ..+-.++...|.+.+|++...+... +.
T Consensus 261 ~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~---~d 337 (504)
T KOG0624|consen 261 PFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD---ID 337 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh---cC
Confidence 12111 22345578888888888887775433223333 3455677788999999999988865 55
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 037713 373 PS-LQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD 406 (610)
Q Consensus 373 ~~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 406 (610)
|+ +.++.--..+|.-...+++|..-|+.. ...|+
T Consensus 338 ~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 338 PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 65 788888889999999999999999887 44443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.2e-05 Score=73.95 Aligned_cols=163 Identities=14% Similarity=0.140 Sum_probs=92.4
Q ss_pred HHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCh--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 037713 289 IIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQA--EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFK 363 (610)
Q Consensus 289 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~--~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 363 (610)
+++++..++++.+ ++..+|+.....+.+.|+. ++++.+++++.+...+ |..+|.....++.+.|+++++++.++
T Consensus 88 l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~ 166 (320)
T PLN02789 88 LEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCH 166 (320)
T ss_pred HHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4555555544432 2334455443334444432 4556666666554333 45555555555556666666666666
Q ss_pred HhHHhcCCCCCHHHHHHHHHHHHhc---CC----HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc----CchhHHHHHH
Q 037713 364 SMIEDYGITPSLQHYTCLLDLLSRS---GH----LDEAENLIKAM-PFEP-DEPTWAALLSACKHH----RNTEMGTRVA 430 (610)
Q Consensus 364 ~~~~~~~~~~~~~~~~~li~~~~~~---g~----~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~----g~~~~a~~~~ 430 (610)
++++. -+-|...|+.....+.+. |. .+++.+...++ ...| |...|+.+...+... ++..+|..++
T Consensus 167 ~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~ 244 (320)
T PLN02789 167 QLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVC 244 (320)
T ss_pred HHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHH
Confidence 66553 223344444444444333 22 23455555343 4444 466777777777663 3456688888
Q ss_pred HHHhcCCCCCCcchHhHHHHhhhh
Q 037713 431 NHLLSLKPEDPSSYILLSNVYASA 454 (610)
Q Consensus 431 ~~~~~~~p~~~~~~~~l~~~~~~~ 454 (610)
.++...+|.++.+...|+++|...
T Consensus 245 ~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 245 LEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHhhcccCCcHHHHHHHHHHHHhh
Confidence 888888888888888899999763
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.4e-05 Score=72.57 Aligned_cols=117 Identities=11% Similarity=0.105 Sum_probs=89.7
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCc--hhHH
Q 037713 352 VGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSA-CKHHRN--TEMG 426 (610)
Q Consensus 352 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~-~~~~g~--~~~a 426 (610)
.++.+++...++...+ .-+.+...|..|...|...|++++|...|++. ...| +...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 5566777777777665 34566788888888888888888888888877 5555 45566666665 356666 4888
Q ss_pred HHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhC
Q 037713 427 TRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 427 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 470 (610)
.++++++++.+|+++.++..++..+...|++++|...++.+.+.
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 88888888888888888888888888888888888888888654
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.45 E-value=9.4e-05 Score=67.86 Aligned_cols=301 Identities=14% Similarity=0.084 Sum_probs=165.5
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCC--ChhhHHH-HHHHHHhC
Q 037713 142 VKSSLVDMYAKCGLPNNARAVFDSIKLK---NSVSWTAMLSAYARSGRKKDAMEIFEQAPVR--NLFLWTA-LVSGLVQS 215 (610)
Q Consensus 142 ~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~-li~~~~~~ 215 (610)
-+++.+..+.+..++++|.+++..-.++ +....+.+..+|-...++..|-..++++... ...-|.. -...+.+.
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence 3556666667888888888887766544 4456677777888888888888888876533 2222222 13455667
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHhHHHHHHHH--HhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 037713 216 RNEIDAFYSFIEMRREGVDIVDPLVLSSIVGA--CANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAK 293 (610)
Q Consensus 216 g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 293 (610)
+.+.+|+++...|... |+-..-..-+.+ -.+.+++..++.+.++.... .+..+.+...-...+.|+++.|.
T Consensus 92 ~i~ADALrV~~~~~D~----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred cccHHHHHHHHHhcCC----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHH
Confidence 7788888887777542 111111111111 12334444444444433211 12223333333344555555555
Q ss_pred HHHHhcCC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 037713 294 DIFGRMRR----KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369 (610)
Q Consensus 294 ~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 369 (610)
+-|+...+ .....||..+..| +.|+++.|+++..+++++|++-.+ -++ .|...++..+ +..
T Consensus 165 qkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HP-Elg--------IGm~tegiDv-rsv---- 229 (459)
T KOG4340|consen 165 QKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHP-ELG--------IGMTTEGIDV-RSV---- 229 (459)
T ss_pred HHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCC-ccC--------ccceeccCch-hcc----
Confidence 55555543 2344454433332 345555555555555555544111 000 0100000000 000
Q ss_pred CCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCC
Q 037713 370 GITPS-------LQHYTCLLDLLSRSGHLDEAENLIKAMP----FEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKP 438 (610)
Q Consensus 370 ~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 438 (610)
| .|- +..+|.-...+.+.|+++.|.+-+..|| -+.|++|...+.-. -..+++..+.+-+.-+++++|
T Consensus 230 g-Nt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP 307 (459)
T KOG4340|consen 230 G-NTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP 307 (459)
T ss_pred c-chHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC
Confidence 0 001 1223333334568899999999999994 23467776654332 234556677777777788888
Q ss_pred CCCcchHhHHHHhhhhcchhHHHHHHHH
Q 037713 439 EDPSSYILLSNVYASAAMWQHVSKVRKL 466 (610)
Q Consensus 439 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 466 (610)
--+.++..+.-+|++..-++-|..++.+
T Consensus 308 fP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 308 FPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred CChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 7778999999999999999988887654
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=8.2e-06 Score=69.98 Aligned_cols=122 Identities=11% Similarity=0.027 Sum_probs=88.3
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 037713 325 ALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PF 403 (610)
Q Consensus 325 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 403 (610)
.+|++..+. .|+. +..+..++...|++++|...|+.... --+.+...|..+..++.+.|++++|...|++. ..
T Consensus 14 ~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 344444443 3443 44566777788888888888888765 23446677888888888888888888888877 44
Q ss_pred CC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhh
Q 037713 404 EP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYA 452 (610)
Q Consensus 404 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 452 (610)
.| +...+..+..++...|+.++|...++++++..|+++..+.....+..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 44 56677777778888888888888888888888888877766665543
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.6e-05 Score=85.33 Aligned_cols=200 Identities=13% Similarity=0.155 Sum_probs=162.0
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 037713 270 ESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK--------DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341 (610)
Q Consensus 270 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 341 (610)
|.+...|-..|......++.++|++++++.... -...|.++++.-...|.-+...++|++..+. .-....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 445667777888888888999999988887642 2457888888888888888889999998774 212456
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHH
Q 037713 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD---EPTWAALLSAC 417 (610)
Q Consensus 342 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~~~ 417 (610)
|..|...|.+.+..++|.++++.|.++++ -....|...++.+.+..+-++|..++++. ..-|. .......+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 78888999999999999999999999766 56678999999999999999999999877 33343 33344455556
Q ss_pred HhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhCCCc
Q 037713 418 KHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVK 473 (610)
Q Consensus 418 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 473 (610)
.+.|+.+.+..+|+..+...|.....|...+++-.+.|..+.++.+|++....++.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 78999999999999999999988889999999999999999999999999877664
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.0001 Score=78.26 Aligned_cols=372 Identities=13% Similarity=0.040 Sum_probs=204.0
Q ss_pred CchHHHHHHHHhHHCCCCCCC-hhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHH
Q 037713 84 LPQKTISIFSTMLALDKLQPD-HFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAV 162 (610)
Q Consensus 84 ~~~~A~~~~~~m~~~~~~~pd-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 162 (610)
+...|+..|-+..+. .|+ ...|..|...|....+...|.+.|..+.+.+ +.|...+.+..+.|++..+++.|..+
T Consensus 473 ~~~~al~ali~alrl---d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 473 NSALALHALIRALRL---DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hHHHHHHHHHHHHhc---ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHH
Confidence 366677777666553 333 3457777777777778888888888888776 66777888899999999999999888
Q ss_pred HHhcCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 037713 163 FDSIKLKN-----SVSWTAMLSAYARSGRKKDAMEIFEQAPV---RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVD 234 (610)
Q Consensus 163 ~~~m~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 234 (610)
.-...+.+ ...|-..--.|.+.++..+|..-|+.... +|...|..+..+|...|++..|+++|.+.....
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-- 626 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR-- 626 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--
Confidence 54443332 12333344456778888888888876553 366788889999999999999999998877654
Q ss_pred CCCH-hHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-------cCCHHHHHHHHHhcCC-----
Q 037713 235 IVDP-LVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAK-------CSDIIAAKDIFGRMRR----- 301 (610)
Q Consensus 235 ~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~-------~g~~~~A~~~~~~~~~----- 301 (610)
|+. ..---....-+..|.+.++...++.+.... .......+.|...+.+ .|-..+|..+|+.-.+
T Consensus 627 -P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~-s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~ 704 (1238)
T KOG1127|consen 627 -PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAF-SLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVS 704 (1238)
T ss_pred -cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 333 222222233456778888887777765531 0111122223322222 2333333333332211
Q ss_pred ------CChhHHHHHHHHHHh---cC--ChH-HHHH-HHHHHHHcCCCCC--------------------HHHHHHHHHH
Q 037713 302 ------KDVVSWTSIIVGTAQ---HG--QAE-ETLA-LYDEMVSAGVKPN--------------------EVTFVGLIYA 348 (610)
Q Consensus 302 ------~~~~~~~~li~~~~~---~g--~~~-~A~~-l~~~m~~~g~~p~--------------------~~t~~~ll~a 348 (610)
.+...|-.+-+++.- .. -+. -.+. ++.+....+.-|+ ..+|..|...
T Consensus 705 l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGin 784 (1238)
T KOG1127|consen 705 LIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGIN 784 (1238)
T ss_pred HHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHH
Confidence 133334333332211 00 000 0001 1111222222221 1222222222
Q ss_pred Hhc----cC----CHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHH
Q 037713 349 CSH----VG----LVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM--PFEPDEPTWAALLSACK 418 (610)
Q Consensus 349 ~~~----~g----~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~ 418 (610)
|.+ .| +...|...+...++- ...+...|+.|.-+ ...|.+.-|..-|-+- ..+....+|..+.-.|.
T Consensus 785 ylr~f~~l~et~~~~~~Ai~c~KkaV~L--~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l 861 (1238)
T KOG1127|consen 785 YLRYFLLLGETMKDACTAIRCCKKAVSL--CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVL 861 (1238)
T ss_pred HHHHHHHcCCcchhHHHHHHHHHHHHHH--hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEE
Confidence 221 11 122344444444331 12233344443332 4445555554444333 12234566666666677
Q ss_pred hcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHH
Q 037713 419 HHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKL 466 (610)
Q Consensus 419 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 466 (610)
...+++.|...|.+...++|.+...+...+.+-...|+.-++..++..
T Consensus 862 ~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 862 ENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred ecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 777777777777777777777777776666666667766666666554
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.39 E-value=9.2e-05 Score=81.18 Aligned_cols=226 Identities=12% Similarity=0.075 Sum_probs=171.1
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCC--------ChhhHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037713 128 HACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK--------NSVSWTAMLSAYARSGRKKDAMEIFEQAPV 199 (610)
Q Consensus 128 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 199 (610)
|+.++... |.+...|-..|......++++.|++++++.... -...|.++++.-...|.-+...++|++..+
T Consensus 1447 ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 34444433 556778888888888999999999998887532 245788888888888888888888888765
Q ss_pred C-C-hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCC-CchhHH
Q 037713 200 R-N-LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYE-SCLFIS 276 (610)
Q Consensus 200 ~-~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~ 276 (610)
- | ...|..|...|.+.+++++|.++|+.|.+.= . -....|...+....+..+-+.|+.++.++.+.-.. ..+.+.
T Consensus 1526 ycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~I 1603 (1710)
T KOG1070|consen 1526 YCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-G-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFI 1603 (1710)
T ss_pred hcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-c-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHH
Confidence 4 3 3568888889999999999999999998752 1 46677888888888888888888888888776322 245666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhc
Q 037713 277 NAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE--VTFVGLIYACSH 351 (610)
Q Consensus 277 ~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~ 351 (610)
.-.+.+-.++|+.+.++.+|+.... +-...|+..|..=.++|+.+.+..+|++....++.|-. ..|...|..=-+
T Consensus 1604 skfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~ 1683 (1710)
T KOG1070|consen 1604 SKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKS 1683 (1710)
T ss_pred HHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHh
Confidence 7777888899999999999998864 35678999999999999999999999999988877653 344444444444
Q ss_pred cCCHH
Q 037713 352 VGLVG 356 (610)
Q Consensus 352 ~g~~~ 356 (610)
.|+-+
T Consensus 1684 ~Gde~ 1688 (1710)
T KOG1070|consen 1684 HGDEK 1688 (1710)
T ss_pred cCchh
Confidence 44433
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.0053 Score=65.14 Aligned_cols=409 Identities=11% Similarity=0.090 Sum_probs=201.9
Q ss_pred cCCChHHHHHHHccCCC--CCcchHHHHHHHH--HcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHH
Q 037713 50 KCDLVQYAHHLLEEMPQ--RDHVSWASILTAY--NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125 (610)
Q Consensus 50 ~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~ 125 (610)
..+++..|.+..+++.+ ||.. |...+.++ .+.|+.++|..+++.....+ . -|..|...+-..|...+..+++.
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~-~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLK-G-TDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCC-C-CchHHHHHHHHHHHHHhhhhHHH
Confidence 34667777776666553 3332 44555544 46777777777776665433 1 26677777777777777777777
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHhCCChHH----HHHHHHhcCCCChhhHHHHHHHHHhcC----------CHHHHH
Q 037713 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNN----ARAVFDSIKLKNSVSWTAMLSAYARSG----------RKKDAM 191 (610)
Q Consensus 126 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~~~~~~~li~~~~~~g----------~~~~A~ 191 (610)
.++++..+. .|+......+..+|.+.+++.+ |.+++...+++--.-|+. ++.+.+.- -+.-|.
T Consensus 98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV-~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSV-ISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHH-HHHHHHhccCCcccccchhHHHHH
Confidence 777777664 3446666666677777666543 445555444444444443 22221110 123344
Q ss_pred HHHhhCCCCC-h-hh---HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHH
Q 037713 192 EIFEQAPVRN-L-FL---WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIA 266 (610)
Q Consensus 192 ~~~~~~~~~~-~-~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 266 (610)
+.++.+.+.+ . .+ .-.-...+-..|++++|++++..=......+.+...-+--+..+...+++.+..++-.++..
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 5555544333 1 11 11112234456667777777633322222224444445556666666777777777776666
Q ss_pred hCCCCchhHHHHHHHHHHhc----------------CCHHHHHHHHHhcCCC-ChhHHHHHHHHHH---hcCChHHHHHH
Q 037713 267 LGYESCLFISNAIVDMYAKC----------------SDIIAAKDIFGRMRRK-DVVSWTSIIVGTA---QHGQAEETLAL 326 (610)
Q Consensus 267 ~~~~~~~~~~~~li~~y~~~----------------g~~~~A~~~~~~~~~~-~~~~~~~li~~~~---~~g~~~~A~~l 326 (610)
.|... |...++.+.++ +.++...+...+.... .-..|-+-+.++. .-|+.++++..
T Consensus 255 k~~Dd----y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~ 330 (932)
T KOG2053|consen 255 KGNDD----YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSY 330 (932)
T ss_pred hCCcc----hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHH
Confidence 65332 33322222211 1111111111111110 1112222222222 33555555444
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHH-------HHHHHHHHHHhcCCH-----HHH
Q 037713 327 YDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQ-------HYTCLLDLLSRSGHL-----DEA 394 (610)
Q Consensus 327 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~g~~-----~~A 394 (610)
|-+- -|-+|- +..=+..|...=..++-..++..... ..++.. -+.+.+....-.|.+ +.-
T Consensus 331 y~~k--fg~kpc---c~~Dl~~yl~~l~~~q~~~l~~~l~~---~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i 402 (932)
T KOG2053|consen 331 YFKK--FGDKPC---CAIDLNHYLGHLNIDQLKSLMSKLVL---ADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSI 402 (932)
T ss_pred HHHH--hCCCcH---hHhhHHHhhccCCHHHHHHHHHHhhc---cCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHH
Confidence 3321 222221 11111111111122222222222211 111111 122333322223321 111
Q ss_pred HHHHHhC------C------CCCC---------HHHHHHHHHHHHhcCchh---HHHHHHHHHhcCCCCCCcchHhHHHH
Q 037713 395 ENLIKAM------P------FEPD---------EPTWAALLSACKHHRNTE---MGTRVANHLLSLKPEDPSSYILLSNV 450 (610)
Q Consensus 395 ~~~~~~m------~------~~p~---------~~~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~p~~~~~~~~l~~~ 450 (610)
..++.+. + .-|. ..+.+.|+..|.+.++.. +|+-+++..+..+|.|+..-..|+.+
T Consensus 403 ~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiri 482 (932)
T KOG2053|consen 403 LAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRI 482 (932)
T ss_pred HHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHH
Confidence 1222111 1 1222 223456777788877654 56667777778889888888899999
Q ss_pred hhhhcchhHHHHHHHHHhhCCCccCC
Q 037713 451 YASAAMWQHVSKVRKLMSVMEVKKEP 476 (610)
Q Consensus 451 ~~~~g~~~~a~~~~~~m~~~~~~~~~ 476 (610)
|.-.|-+..|.+.++.+.-+.+..++
T Consensus 483 Y~~lGa~p~a~~~y~tLdIK~IQ~DT 508 (932)
T KOG2053|consen 483 YSYLGAFPDAYELYKTLDIKNIQTDT 508 (932)
T ss_pred HHHhcCChhHHHHHHhcchHHhhhcc
Confidence 99999999999999988776666543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.0012 Score=68.92 Aligned_cols=166 Identities=9% Similarity=-0.009 Sum_probs=102.9
Q ss_pred hhccCChHHHHHHHHHHHHhCCCCCCchHHHHHHHhhcCCChHHHHHHHccCCCC-----------Cc-chHHHHHHHHH
Q 037713 13 CARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQR-----------DH-VSWASILTAYN 80 (610)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-----------~~-~~~~~li~~~~ 80 (610)
+...|+.+.|-+-...+. +..+|..|.+|+.+..+++-|.-.+..|... |. ..=....-.-.
T Consensus 738 yvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAi 811 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAI 811 (1416)
T ss_pred EEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHH
Confidence 345677777776655443 3467999999999999888888877777521 11 11111122234
Q ss_pred cCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHH
Q 037713 81 QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNAR 160 (610)
Q Consensus 81 ~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 160 (610)
+-|..++|..+|++-.+.+ .+=+.|-..|.+++|.++-+.=-+..+ ..+|..-..-+-..++.+.|+
T Consensus 812 eLgMlEeA~~lYr~ckR~D----------LlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKRYD----------LLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred HHhhHHHHHHHHHHHHHHH----------HHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHH
Confidence 5688889999998877632 344556677888888887654322222 123433444445567777777
Q ss_pred HHHHhcCC-----------------------CChhhHHHHHHHHHhcCCHHHHHHHHhhC
Q 037713 161 AVFDSIKL-----------------------KNSVSWTAMLSAYARSGRKKDAMEIFEQA 197 (610)
Q Consensus 161 ~~~~~m~~-----------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 197 (610)
+.|++-.. +|...|.-...-+-..|+++.|+.+|...
T Consensus 879 eyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A 938 (1416)
T KOG3617|consen 879 EYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA 938 (1416)
T ss_pred HHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 77765431 24444555555556678888888887753
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.1e-05 Score=72.22 Aligned_cols=182 Identities=14% Similarity=0.042 Sum_probs=126.5
Q ss_pred CCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCC-C-chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-h---hHH
Q 037713 236 VDPLVLSSIVGACANFAVLELGKQIHGLVIALGYE-S-CLFISNAIVDMYAKCSDIIAAKDIFGRMRR--KD-V---VSW 307 (610)
Q Consensus 236 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~---~~~ 307 (610)
.....+......+...|+++.|...++.+.+.... | ....+..+..+|.+.|++++|...|+++.+ |+ . .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 56677888888899999999999999999886422 1 124677889999999999999999999864 32 2 245
Q ss_pred HHHHHHHHhc--------CChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHH
Q 037713 308 TSIIVGTAQH--------GQAEETLALYDEMVSAGVKPNEV-TFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY 378 (610)
Q Consensus 308 ~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 378 (610)
..+..++.+. |+.++|.+.|+++... .|+.. ....+.... . ..... . ...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~----~------~~~~~-~--------~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMD----Y------LRNRL-A--------GKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHH----H------HHHHH-H--------HHH
Confidence 5566666654 7889999999999876 34432 221111110 0 00000 0 112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCC
Q 037713 379 TCLLDLLSRSGHLDEAENLIKAM----PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKP 438 (610)
Q Consensus 379 ~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 438 (610)
..+...|.+.|++++|...+++. +-.| ....+..+..++...|++++|...++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 35667788889999999888877 2223 246788888889999999999998887766554
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00041 Score=67.73 Aligned_cols=206 Identities=11% Similarity=-0.008 Sum_probs=132.6
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccc-cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 037713 208 LVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFA-VLELGKQIHGLVIALGYESCLFISNAIVDMYAKC 286 (610)
Q Consensus 208 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 286 (610)
+-..+...++.++|+.++.++.+... -+...|..--.++...+ .++++...++.+.+.. +.+..+|+.....+.+.
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~lnP--~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l 119 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLNP--GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCc--hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHc
Confidence 33445566777777777777776552 23444444444445555 4677777777777664 33445566555555555
Q ss_pred CCH--HHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc---CC----
Q 037713 287 SDI--IAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHV---GL---- 354 (610)
Q Consensus 287 g~~--~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~---g~---- 354 (610)
|+. +++..+++.+.+ +|..+|+...-.+...|+++++++.++++++..+. |...|+.....+.+. |.
T Consensus 120 ~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~ 198 (320)
T PLN02789 120 GPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAM 198 (320)
T ss_pred CchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccccccc
Confidence 652 567777776653 57788888888888889999999999999887655 555666555555444 22
Q ss_pred HHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 037713 355 VGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRS----GHLDEAENLIKAM-PFEP-DEPTWAALLSACKH 419 (610)
Q Consensus 355 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~ 419 (610)
.++..++...++.. .+-|...|+.+..+|... +...+|.+++.+. ...| +......|+..|+.
T Consensus 199 ~e~el~y~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 199 RDSELKYTIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 24567777666652 345667888888888763 3456677777775 3344 45666667777664
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=7e-05 Score=67.98 Aligned_cols=154 Identities=12% Similarity=0.111 Sum_probs=114.3
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHH
Q 037713 280 VDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGR 359 (610)
Q Consensus 280 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 359 (610)
+-.|.+.|+++......+.+..+. ..+...++.++++..+++..+.. +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456777888777655443332221 01223566778888888877753 347888999999999999999999
Q ss_pred HHHHHhHHhcCCCCCHHHHHHHHHH-HHhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHh
Q 037713 360 KLFKSMIEDYGITPSLQHYTCLLDL-LSRSGH--LDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLL 434 (610)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~--~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 434 (610)
..|+...+- .+.+...+..+..+ |.+.|+ .++|.+++++. ...| +...+..+...+...|++++|+..+++++
T Consensus 94 ~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999988763 34467888888886 467777 59999999988 5556 46677777788999999999999999999
Q ss_pred cCCCCCCcch
Q 037713 435 SLKPEDPSSY 444 (610)
Q Consensus 435 ~~~p~~~~~~ 444 (610)
++.|++..-+
T Consensus 172 ~l~~~~~~r~ 181 (198)
T PRK10370 172 DLNSPRVNRT 181 (198)
T ss_pred hhCCCCccHH
Confidence 9998775444
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.0026 Score=63.55 Aligned_cols=202 Identities=12% Similarity=0.106 Sum_probs=133.3
Q ss_pred hHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccc---cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 037713 218 EIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFA---VLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKD 294 (610)
Q Consensus 218 ~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~ 294 (610)
.+++..+++.....-.. -+..+|..+..---..- ..+....++..+...-...-..+|..+++.-.+..-+..|+.
T Consensus 309 t~e~~~~yEr~I~~l~~-~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~ 387 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLK-ENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARK 387 (656)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHH
Confidence 46677777776654433 45555555544322222 255555666666555333334567778888888888899999
Q ss_pred HHHhcCC----C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 037713 295 IFGRMRR----K-DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE-VTFVGLIYACSHVGLVGKGRKLFKSMIED 368 (610)
Q Consensus 295 ~~~~~~~----~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 368 (610)
+|.+..+ + ++...++++.-|| .++..-|.++|+--... -+|. .--...+.-+++.++-..+..+|+.....
T Consensus 388 iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 388 IFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 9988874 2 6777888888777 46777888888875543 2233 33345667777888888899999998886
Q ss_pred cCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHhC----C--CCCCHHHHHHHHHHHHhcCchh
Q 037713 369 YGITPSL--QHYTCLLDLLSRSGHLDEAENLIKAM----P--FEPDEPTWAALLSACKHHRNTE 424 (610)
Q Consensus 369 ~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m----~--~~p~~~~~~~ll~~~~~~g~~~ 424 (610)
++.|+. ..|..+++-=..-|++..+.++-+++ + ..|....-..++.-|.-.+.+.
T Consensus 465 -~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 465 -VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred -cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccccc
Confidence 666654 78999999888899999988887776 2 2332233344555555555443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00032 Score=69.27 Aligned_cols=176 Identities=16% Similarity=0.118 Sum_probs=127.5
Q ss_pred CHHHHHHHHHhcCC------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 037713 288 DIIAAKDIFGRMRR------KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL 361 (610)
Q Consensus 288 ~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 361 (610)
++.+++..-++++. ++.......+.+.........+-.++- +... ..-...-|..-+ .+...|.+++|+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~-~~~~-~~~~aa~YG~A~-~~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLA-KRSK-RGGLAAQYGRAL-QTYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHH-HHhC-ccchHHHHHHHH-HHHHhcccchHHHH
Confidence 35556666666663 345555555555443333333333322 2222 111223344433 45567999999999
Q ss_pred HHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCC
Q 037713 362 FKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD-EPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439 (610)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 439 (610)
++.+.+ ..+-|+..+....+.+.+.++.++|.+.++++ ...|+ ...+..+..++.+.|++++|+.+++.....+|+
T Consensus 329 l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~ 406 (484)
T COG4783 329 LQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE 406 (484)
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Confidence 999987 45667777788889999999999999999998 66777 667778888899999999999999999999999
Q ss_pred CCcchHhHHHHhhhhcchhHHHHHHHHHh
Q 037713 440 DPSSYILLSNVYASAAMWQHVSKVRKLMS 468 (610)
Q Consensus 440 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 468 (610)
|+..|..|+.+|...|+..++...+.+..
T Consensus 407 dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 407 DPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred CchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 99999999999999999888888776653
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.2e-05 Score=67.90 Aligned_cols=118 Identities=10% Similarity=0.080 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhh
Q 037713 375 LQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYA 452 (610)
Q Consensus 375 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 452 (610)
....-.+...+...|++++|..+|+-. .+.| +..-|..|...|...|++++|+..|.++..++|+||.++..++.+|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 345556666778899999999999988 5556 46678888888999999999999999999999999999999999999
Q ss_pred hhcchhHHHHHHHHHhhCCCccCCcccEEEECCEEEEEEeccCCCCChHHHHHHHHHHHHHHH
Q 037713 453 SAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMK 515 (610)
Q Consensus 453 ~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~ 515 (610)
..|+.+.|.+.|+...... ..+|+..++.++.+..+..+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHhh
Confidence 9999999999999875421 134566666666666665554
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.5e-05 Score=68.34 Aligned_cols=107 Identities=11% Similarity=0.035 Sum_probs=90.6
Q ss_pred HHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCC
Q 037713 360 KLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLK 437 (610)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 437 (610)
.+++...+ +.|+ .+..+...+...|++++|...|+.. ...| +...|..+..++...|++++|...|+++++++
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34444443 3444 4566788899999999999999988 5555 67788889999999999999999999999999
Q ss_pred CCCCcchHhHHHHhhhhcchhHHHHHHHHHhhCC
Q 037713 438 PEDPSSYILLSNVYASAAMWQHVSKVRKLMSVME 471 (610)
Q Consensus 438 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 471 (610)
|+++.++..++.++...|++++|...++...+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999886543
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.0061 Score=61.04 Aligned_cols=424 Identities=10% Similarity=0.065 Sum_probs=250.6
Q ss_pred CCCCchHHHHHHHhhcCCChHHHHHHHccCCCC---CcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHH
Q 037713 35 HQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQR---DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASL 111 (610)
Q Consensus 35 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~l 111 (610)
+.|...|+.||.-+... .++++++.++++..+ ....|..-|..-.+..+++....+|.+.+..- -+...|..-
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv---LnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV---LNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH---hhHhHHHHH
Confidence 45788899999876655 999999999998743 45679999999999999999999999887632 345555555
Q ss_pred HHHHhc-cCCcHHH----HHHHHHH-HhcCCCCC-hhHHHHHHHH---------HHhCCChHHHHHHHHhcCCC------
Q 037713 112 VKACGS-LGATRLG----KQVHACF-VLSPFCDD-DVVKSSLVDM---------YAKCGLPNNARAVFDSIKLK------ 169 (610)
Q Consensus 112 l~~~~~-~~~~~~a----~~~~~~~-~~~g~~~~-~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~~------ 169 (610)
|.--.+ .++.... .+.|+.. .+.|+++- ...|+..++. |....+++..++++.++..-
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 543322 2223222 2333333 34454443 3346655554 34445677778888877632
Q ss_pred ----ChhhHHHHHHHH-------HhcCCHHHHHHHHhhCC------CCC---------------hhhHHHHHHHHHhCCC
Q 037713 170 ----NSVSWTAMLSAY-------ARSGRKKDAMEIFEQAP------VRN---------------LFLWTALVSGLVQSRN 217 (610)
Q Consensus 170 ----~~~~~~~li~~~-------~~~g~~~~A~~~~~~~~------~~~---------------~~~~~~li~~~~~~g~ 217 (610)
|-..|..=|+.. -+...+-.|.+++++.. .++ +..|-.+|..--.++-
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL 252 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCc
Confidence 222222222211 12233444555554422 011 1124444433222111
Q ss_pred h--------HHHHHHHHHH-HHcCCCCCCHhHHH-HHH----HHHhcccc-------HHHHHHHHHHHHHhCCCCchhHH
Q 037713 218 E--------IDAFYSFIEM-RREGVDIVDPLVLS-SIV----GACANFAV-------LELGKQIHGLVIALGYESCLFIS 276 (610)
Q Consensus 218 ~--------~~A~~~~~~m-~~~~~~~p~~~t~~-~ll----~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~ 276 (610)
- ....-.+++. .-.+.. |+..... .-+ +.+...|+ -+++..+++..+..-...+..+|
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~-peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly 331 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYH-PEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLY 331 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1122222221 122222 3322111 111 11222332 34555666665554434444555
Q ss_pred HHHHHHHHhcC---CHHHHHHHHHhcCC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 037713 277 NAIVDMYAKCS---DIIAAKDIFGRMRR----KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKP-NEVTFVGLIYA 348 (610)
Q Consensus 277 ~~li~~y~~~g---~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a 348 (610)
.++.+.--..- ..+.....+++... .-..+|...+..-.+..-...|..+|.+..+.+..+ +....++++.-
T Consensus 332 ~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 332 FALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY 411 (656)
T ss_pred HHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH
Confidence 54443211111 23344444444432 335678888888888888999999999999998888 66777777776
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCch
Q 037713 349 CSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM---PFEPD--EPTWAALLSACKHHRNT 423 (610)
Q Consensus 349 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~--~~~~~~ll~~~~~~g~~ 423 (610)
++ .++.+.|.++|+.-.+++|- ++.--...++-+...++-..|..+|++. .+.|+ ...|..+|.--..-|+.
T Consensus 412 ~c-skD~~~AfrIFeLGLkkf~d--~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL 488 (656)
T KOG1914|consen 412 YC-SKDKETAFRIFELGLKKFGD--SPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDL 488 (656)
T ss_pred Hh-cCChhHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccH
Confidence 65 58889999999998886543 4455567888889999999999999998 23444 57899999999999999
Q ss_pred hHHHHHHHHHhcCCCCC----CcchHhHHHHhhhhcchhHHHHHHHH
Q 037713 424 EMGTRVANHLLSLKPED----PSSYILLSNVYASAAMWQHVSKVRKL 466 (610)
Q Consensus 424 ~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~ 466 (610)
..+.++-++....-|.+ ...-..+.+-|.-.+.+..-..-++.
T Consensus 489 ~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~ 535 (656)
T KOG1914|consen 489 NSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKF 535 (656)
T ss_pred HHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHh
Confidence 99999999887665522 12334556666666655443333333
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.5e-05 Score=78.37 Aligned_cols=215 Identities=11% Similarity=0.016 Sum_probs=143.2
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhcC
Q 037713 241 LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR--KDVVSWTSIIVGTAQHG 318 (610)
Q Consensus 241 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g 318 (610)
-..+...+.+.|-...|..+++.. ..|..+|.+|...|+..+|..+..+-.+ ||...|..+.+..-...
T Consensus 401 q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChH
Confidence 334445555566666666666543 2345566667777766666666554443 45566666666665555
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 037713 319 QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLI 398 (610)
Q Consensus 319 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 398 (610)
-+++|.++++..-.. .-..+.....+.++++++.+.|+.-.+- .+....+|-.+.-+..+.++++.|.+.|
T Consensus 472 ~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~--nplq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 472 LYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI--NPLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc--CccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 666666666553221 0001111122356777777777665542 2234567777777778888999998888
Q ss_pred HhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhCCCc
Q 037713 399 KAM-PFEPD-EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVK 473 (610)
Q Consensus 399 ~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 473 (610)
..- ...|| ...||.+-.+|.+.|+..+|...+.++++-+-.++..+....-+..+.|.|++|.+.+..+.+....
T Consensus 543 ~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 543 HRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred HHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence 776 66676 5679999999999999999999999999888777777777777788899999999998888654443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=5.8e-05 Score=77.62 Aligned_cols=190 Identities=15% Similarity=0.173 Sum_probs=159.0
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037713 268 GYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIY 347 (610)
Q Consensus 268 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 347 (610)
+++|-...-..+.+.+..+|-...|..+|+++ ..|.-.|..|...|+..+|..+..+-.+. +||..-|..+..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhh
Confidence 34555666778899999999999999999974 67888899999999999999999988873 789999999999
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhH
Q 037713 348 ACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEM 425 (610)
Q Consensus 348 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 425 (610)
..-...-+++|.++++....+ .-..+.....+.++++++.+.|+.- .+.| ...+|..+..+..+.++.+.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 888888899999998876542 1122222334579999999999865 4444 46789888888899999999
Q ss_pred HHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhCCC
Q 037713 426 GTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEV 472 (610)
Q Consensus 426 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 472 (610)
|.+.|.....++|++..+|+.++.+|.+.|+..+|...+++..+-+.
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~ 584 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY 584 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999877664
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=9.3e-05 Score=79.64 Aligned_cols=133 Identities=11% Similarity=0.120 Sum_probs=94.1
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHH
Q 037713 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN-EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381 (610)
Q Consensus 303 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 381 (610)
++..+-.|.....+.|++++|..+++...+. .|| ......+..++.+.+.+++|....+.... .-+-+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 4666677777777788888888888877764 555 34555667777778888888887777765 233345666777
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCC
Q 037713 382 LDLLSRSGHLDEAENLIKAM-PFEPD-EPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439 (610)
Q Consensus 382 i~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 439 (610)
..++.+.|++++|.++|++. .-.|+ ..++.++..++...|+.++|...|+++++...+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 77777888888888888777 22333 667777777777888888888888887766543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00018 Score=78.28 Aligned_cols=219 Identities=11% Similarity=0.070 Sum_probs=146.1
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhH-HHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHH
Q 037713 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLV-LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAI 279 (610)
Q Consensus 201 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 279 (610)
+...|..|+..|...+++++|.++.+...+.. |+... |..+...+.+.++.+.+..+ .+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~---P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH---KKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 56789999999999999999999999777765 44333 22222345555555444433 23
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 037713 280 VDMYAKCSDIIAAKDIFGRMRR--KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGK 357 (610)
Q Consensus 280 i~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 357 (610)
++......++.-...+...|.. .+-.++-.+..+|.+.|+.++|...|+++.+.. +-|....|.+...++.. ++++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 3333333334333333333332 233466778888888888888888888888876 33677788888888888 8888
Q ss_pred HHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC----------------------CCCCCHHHHHHHHH
Q 037713 358 GRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM----------------------PFEPDEPTWAALLS 415 (610)
Q Consensus 358 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----------------------~~~p~~~~~~~ll~ 415 (610)
|.+++.+++.. |...+++.++.+++.++ +..--..++..+-.
T Consensus 168 A~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~ 231 (906)
T PRK14720 168 AITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYE 231 (906)
T ss_pred HHHHHHHHHHH----------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHH
Confidence 88888777653 33333444444444443 22223444555567
Q ss_pred HHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhH
Q 037713 416 ACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQH 459 (610)
Q Consensus 416 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 459 (610)
.|...++++.+..+++.+++.+|.|..+..-++..|. +++.+
T Consensus 232 ~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~ 273 (906)
T PRK14720 232 PYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD 273 (906)
T ss_pred HHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC
Confidence 7888899999999999999999999888888888886 44444
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.22 E-value=4.3e-05 Score=69.24 Aligned_cols=126 Identities=14% Similarity=0.079 Sum_probs=80.4
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhc
Q 037713 343 VGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM--PFEPDEPTWAALLSACKHH 420 (610)
Q Consensus 343 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~ 420 (610)
..+-.++...|+-+....+...... ..+.|......++....+.|++.+|...|++. +-.||...|+.+..+|-+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHc
Confidence 4444555556666666655555432 23334445555666677777777777777666 3345666677666667777
Q ss_pred CchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhC
Q 037713 421 RNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 421 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 470 (610)
|+.+.|...|.+++++.|.++..+..|+..|.-.|+++.|..++......
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 77777777777777777777777777777777777777777766665443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00012 Score=66.40 Aligned_cols=149 Identities=13% Similarity=0.088 Sum_probs=70.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 037713 312 VGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHL 391 (610)
Q Consensus 312 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 391 (610)
..+...|+.+....+..+..... .-|.......+....+.|++.+|...+.+... .-++|...|+.+.-+|.+.|++
T Consensus 74 ~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~Gr~ 150 (257)
T COG5010 74 TALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLGRF 150 (257)
T ss_pred HHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHccCh
Confidence 33444444444444444332211 11222233344444555555555555555543 3444455555555555555555
Q ss_pred HHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHH
Q 037713 392 DEAENLIKAM-PFEPD-EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKV 463 (610)
Q Consensus 392 ~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 463 (610)
++|..-|.+. .+.|+ +...+.|...+.-.|+.+.|..++.......+.+...-..|+.+....|++++|..+
T Consensus 151 ~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 151 DEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred hHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 5555544444 23332 333444444455555555555555555544444444455555555555555555543
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.18 E-value=3e-06 Score=52.64 Aligned_cols=34 Identities=35% Similarity=0.794 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 037713 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN 338 (610)
Q Consensus 305 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 338 (610)
.+||++|.+|++.|++++|.++|++|.+.|++||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3789999999999999999999999999999987
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00011 Score=73.75 Aligned_cols=223 Identities=12% Similarity=0.059 Sum_probs=154.9
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 037713 211 GLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDII 290 (610)
Q Consensus 211 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 290 (610)
-+.++|+..+|.-.|+..++..+ -+...|..|....+..++-..|+..+.+..+.. +.+..+.-+|.-.|...|.-.
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP--~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDP--QHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhCh--HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 35667777777777777777662 356666666666667777777777777776654 345666777777777778777
Q ss_pred HHHHHHHhcCCCC-hhHHHHHH---------HHHHhcCChHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHhccCCHHHHH
Q 037713 291 AAKDIFGRMRRKD-VVSWTSII---------VGTAQHGQAEETLALYDEMV-SAGVKPNEVTFVGLIYACSHVGLVGKGR 359 (610)
Q Consensus 291 ~A~~~~~~~~~~~-~~~~~~li---------~~~~~~g~~~~A~~l~~~m~-~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 359 (610)
+|.+.|+.-.... ...|...- ..+..........++|-++. +.+.++|......|.-.|--.|.+++|.
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 7777776543100 00000000 11111222334555665554 4554466666666766778889999999
Q ss_pred HHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhcC
Q 037713 360 KLFKSMIEDYGITP-SLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD-EPTWAALLSACKHHRNTEMGTRVANHLLSL 436 (610)
Q Consensus 360 ~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 436 (610)
..|+.+.. ++| |...||.|...++...+.++|..-|++. .++|+ +..+..|.-+|...|.+++|...|-.++.+
T Consensus 451 Dcf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 451 DCFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 99999875 455 5688999999999999999999999988 78887 567778888899999999999999988866
Q ss_pred CCC
Q 037713 437 KPE 439 (610)
Q Consensus 437 ~p~ 439 (610)
.+.
T Consensus 528 q~k 530 (579)
T KOG1125|consen 528 QRK 530 (579)
T ss_pred hhc
Confidence 543
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0028 Score=57.76 Aligned_cols=175 Identities=17% Similarity=0.096 Sum_probs=107.0
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 037713 260 IHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE 339 (610)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 339 (610)
+.+.+.......+......-...|.+.|++++|.+...... +......=+..+.+..+.+-|.+.+++|.+- -+.
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded 169 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DED 169 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chH
Confidence 34444444333343333334456777888888888877733 2222222334455667778888888888763 255
Q ss_pred HHHHHHHHHHhc----cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHH
Q 037713 340 VTFVGLIYACSH----VGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM--PFEPDEPTWAAL 413 (610)
Q Consensus 340 ~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l 413 (610)
.|.+.|..++.+ .+.+.+|.-+|++|.+ ..+|+..+.+-+..+....|++++|..++++. ....++.+...+
T Consensus 170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nl 247 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANL 247 (299)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 666666666553 3457777888888765 36677777777777777778888888877776 323345555555
Q ss_pred HHHHHhcC-chhHHHHHHHHHhcCCCCCC
Q 037713 414 LSACKHHR-NTEMGTRVANHLLSLKPEDP 441 (610)
Q Consensus 414 l~~~~~~g-~~~~a~~~~~~~~~~~p~~~ 441 (610)
+-.-...| +.+.-.+...++....|..+
T Consensus 248 iv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 248 IVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 55544444 44555566667766667653
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00012 Score=72.88 Aligned_cols=130 Identities=9% Similarity=0.079 Sum_probs=100.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 037713 274 FISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVG 353 (610)
Q Consensus 274 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 353 (610)
....+|+..+...++++.|..+|+++.+.++..+..++..+...++-.+|++++.+..... +-|...+..-...|.+.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 3445566666777889999999999888777777778888888888889999988888652 225555555666788889
Q ss_pred CHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC
Q 037713 354 LVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPD 406 (610)
Q Consensus 354 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~ 406 (610)
+++.|..+.+++.+. .+-+..+|..|..+|.+.|++++|+..++.+|..|.
T Consensus 249 ~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~ 299 (395)
T PF09295_consen 249 KYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPMLTY 299 (395)
T ss_pred CHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCC
Confidence 999999998888762 333457899999999999999999999988875543
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.10 E-value=4.5e-06 Score=51.82 Aligned_cols=35 Identities=20% Similarity=0.497 Sum_probs=31.1
Q ss_pred chHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCCh
Q 037713 70 VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDH 105 (610)
Q Consensus 70 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~ 105 (610)
.+||++|.+|++.|++++|.++|++|.+.| ++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g-~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERG-IEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCCC
Confidence 479999999999999999999999999988 88873
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.08 E-value=4.6e-05 Score=64.79 Aligned_cols=94 Identities=20% Similarity=0.334 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhh
Q 037713 376 QHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYAS 453 (610)
Q Consensus 376 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 453 (610)
.....+...+.+.|++++|.+.|+.. ...| +...|..+...+...|+++.|...++++++.+|+++..+..++.+|..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 44555666666777777777777665 3333 455566666667777777777777777777777777777777777777
Q ss_pred hcchhHHHHHHHHHhh
Q 037713 454 AAMWQHVSKVRKLMSV 469 (610)
Q Consensus 454 ~g~~~~a~~~~~~m~~ 469 (610)
.|++++|.+.++...+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 98 LGEPESALKALDLAIE 113 (135)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 7777777777766654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00011 Score=73.19 Aligned_cols=117 Identities=9% Similarity=0.082 Sum_probs=68.4
Q ss_pred HHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCC
Q 037713 76 LTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGL 155 (610)
Q Consensus 76 i~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 155 (610)
+..+...++++.|+++|+++.+. .|+. ...+.+.+...++-.+|.+++.+.++.. +.|....+...+.+.+.++
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~---~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRER---DPEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhc---CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 34444456666666666666553 2442 2234455555555556666666665443 4455555555666666666
Q ss_pred hHHHHHHHHhcC--CC-ChhhHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037713 156 PNNARAVFDSIK--LK-NSVSWTAMLSAYARSGRKKDAMEIFEQAP 198 (610)
Q Consensus 156 ~~~A~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 198 (610)
.+.|+.+.++.. .| +..+|..|..+|.+.|+++.|+..++.+|
T Consensus 250 ~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 250 YELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 666666666665 23 44566666667777777777776666665
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0048 Score=67.53 Aligned_cols=60 Identities=7% Similarity=-0.020 Sum_probs=34.1
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHH
Q 037713 204 LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIA 266 (610)
Q Consensus 204 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 266 (610)
++-.+..+|-+.|+.++|..+++++.+.. |-|+...+.+...++.. ++++|.+++..+++
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~ 177 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD--RDNPEIVKKLATSYEEE-DKEKAITYLKKAIY 177 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 34455566666666666666666666655 24555555555555555 55555555554443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0023 Score=63.43 Aligned_cols=147 Identities=16% Similarity=0.127 Sum_probs=115.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-HHHHHHH
Q 037713 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFV-GLIYACSHVGLVGKGRKLFKSMIEDYGITPS-LQHYTCL 381 (610)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l 381 (610)
...+......+...|+.++|+..++.++.. .||...|. .....+...++.++|.+.++.+.. ..|+ ....-.+
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~ 380 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNL 380 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHH
Confidence 344444555566789999999999998876 55555444 556788899999999999999976 3455 5677788
Q ss_pred HHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhH
Q 037713 382 LDLLSRSGHLDEAENLIKAM--PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQH 459 (610)
Q Consensus 382 i~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 459 (610)
.++|.+.|++.+|..+++.. ..+-|+..|..|..+|...|+..++.... +..|...|+|++
T Consensus 381 a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~ 443 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQ 443 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHH
Confidence 89999999999999999887 34447888999999999999987776543 456778899999
Q ss_pred HHHHHHHHhhCCC
Q 037713 460 VSKVRKLMSVMEV 472 (610)
Q Consensus 460 a~~~~~~m~~~~~ 472 (610)
|.......+++.-
T Consensus 444 A~~~l~~A~~~~~ 456 (484)
T COG4783 444 AIIFLMRASQQVK 456 (484)
T ss_pred HHHHHHHHHHhcc
Confidence 9998888776543
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.02 E-value=1e-05 Score=49.84 Aligned_cols=33 Identities=33% Similarity=0.683 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 037713 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKP 337 (610)
Q Consensus 305 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 337 (610)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0012 Score=71.26 Aligned_cols=144 Identities=10% Similarity=0.096 Sum_probs=119.8
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHH
Q 037713 268 GYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR--K-DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN-EVTFV 343 (610)
Q Consensus 268 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~ 343 (610)
.++.+...+-.|.....+.|.+++|..+++...+ | +...+..+...+.+.+++++|+..+++.... .|+ .....
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHH
Confidence 4566788888999999999999999999999874 4 5677888999999999999999999999986 444 55666
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHH
Q 037713 344 GLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM--PFEPDEPTWAALLS 415 (610)
Q Consensus 344 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~ 415 (610)
.+..++.+.|.+++|..+|+++.. ..+-+...+..+..++.+.|+.++|...|++. ...|....|+.++.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 230 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV 230 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence 777889999999999999999987 33445788999999999999999999999988 34455556655543
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00019 Score=60.99 Aligned_cols=113 Identities=12% Similarity=0.130 Sum_probs=86.1
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 037713 326 LYDEMVSAGVKPN-EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PF 403 (610)
Q Consensus 326 l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 403 (610)
+|++.... .|+ ......+...+...|++++|.+.|+.+... .+.+...+..+...|.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455443 343 344556777788889999999999888763 3456788888888999999999999988877 44
Q ss_pred CC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCc
Q 037713 404 EP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442 (610)
Q Consensus 404 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 442 (610)
.| +...+..+...+...|+.+.|...++++++++|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 44 4667777778888999999999999999999997754
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.99 E-value=1e-05 Score=49.84 Aligned_cols=34 Identities=21% Similarity=0.436 Sum_probs=28.1
Q ss_pred cchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCC
Q 037713 69 HVSWASILTAYNQANLPQKTISIFSTMLALDKLQP 103 (610)
Q Consensus 69 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p 103 (610)
+.+||.+|.+|++.|+++.|.++|++|.+.| ++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~g-v~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQG-VKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC
Confidence 3578888888888888888888888888877 776
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0082 Score=54.82 Aligned_cols=69 Identities=25% Similarity=0.249 Sum_probs=38.0
Q ss_pred cCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 037713 286 CSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLV 355 (610)
Q Consensus 286 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 355 (610)
.+++.+|.-+|++|.+ |+..+.|.+..++...|++++|..++++......+ +..|...++-+-...|..
T Consensus 186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKD 257 (299)
T ss_pred chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCC
Confidence 3456666666666654 34445555555566666666666666666655333 445555555444444443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.005 Score=55.74 Aligned_cols=170 Identities=12% Similarity=0.185 Sum_probs=118.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCC--C---hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 037713 276 SNAIVDMYAKCSDIIAAKDIFGRMRRK--D---VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACS 350 (610)
Q Consensus 276 ~~~li~~y~~~g~~~~A~~~~~~~~~~--~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 350 (610)
+..++-+...+|+.+.|..+++++..+ + +.-..+| -+-..|++++|+++++...+.. +-|.+++..=+-..-
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam--~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAM--LLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHH--HHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHH
Confidence 333444455567777777777766532 1 1111111 2344788999999999998875 346677776666666
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH-h--cCchhH
Q 037713 351 HVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACK-H--HRNTEM 425 (610)
Q Consensus 351 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~-~--~g~~~~ 425 (610)
..|..-+|++-+....+ .+..|.+.|.-+.+.|...|++++|.-.++++ -+.| ++..+..+...+. . ..+.+.
T Consensus 132 a~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 67877788888888877 47889999999999999999999999999998 4445 3444555555532 2 347889
Q ss_pred HHHHHHHHhcCCCCCCcchHhHHHHhhh
Q 037713 426 GTRVANHLLSLKPEDPSSYILLSNVYAS 453 (610)
Q Consensus 426 a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 453 (610)
+.++|.+.+++.|.+.. .+..+|..
T Consensus 210 arkyy~~alkl~~~~~r---al~GI~lc 234 (289)
T KOG3060|consen 210 ARKYYERALKLNPKNLR---ALFGIYLC 234 (289)
T ss_pred HHHHHHHHHHhChHhHH---HHHHHHHH
Confidence 99999999999985433 44444433
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.036 Score=54.11 Aligned_cols=122 Identities=15% Similarity=0.169 Sum_probs=91.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 037713 276 SNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLV 355 (610)
Q Consensus 276 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 355 (610)
.+..|.-+...|+...|.++-.+..-||-..|...+.+|+..++|++-.++... +-.++-|..++.+|.+.|..
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 344455567789999999999999889999999999999999999887765432 22347788899999999999
Q ss_pred HHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 037713 356 GKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSAC 417 (610)
Q Consensus 356 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~ 417 (610)
.+|..+...+ .+..-+.+|.++|++.+|.+.--+.+ |......+...|
T Consensus 254 ~eA~~yI~k~-----------~~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~~ 301 (319)
T PF04840_consen 254 KEASKYIPKI-----------PDEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKRC 301 (319)
T ss_pred HHHHHHHHhC-----------ChHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHHC
Confidence 9999887663 12456788899999999987755543 444444444433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00063 Score=58.50 Aligned_cols=51 Identities=6% Similarity=0.064 Sum_probs=23.2
Q ss_pred HHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHH
Q 037713 414 LSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRK 465 (610)
Q Consensus 414 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 465 (610)
...+...|++++|+..++.. ...+-.+..+..++++|.+.|++++|...++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 33344455555555554332 1112223344455555555555555555544
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00034 Score=57.76 Aligned_cols=101 Identities=11% Similarity=0.129 Sum_probs=57.1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 037713 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITP-SLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD----EPTWAALLS 415 (610)
Q Consensus 342 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~ 415 (610)
+..+...+...|++++|.+.|..+.+.+.-.+ ....+..+...+.+.|++++|...++.+ ...|+ ...+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34445555556666666666666655321111 1234445666666666666666666655 22222 334555556
Q ss_pred HHHhcCchhHHHHHHHHHhcCCCCCCc
Q 037713 416 ACKHHRNTEMGTRVANHLLSLKPEDPS 442 (610)
Q Consensus 416 ~~~~~g~~~~a~~~~~~~~~~~p~~~~ 442 (610)
++...|+.+.|...++++++..|+++.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 666677777777777777777776543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.76 E-value=3.2e-05 Score=46.33 Aligned_cols=31 Identities=42% Similarity=0.737 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 037713 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAGV 335 (610)
Q Consensus 305 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 335 (610)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3678888888888888888888888877663
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0003 Score=54.88 Aligned_cols=92 Identities=18% Similarity=0.224 Sum_probs=67.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhc
Q 037713 378 YTCLLDLLSRSGHLDEAENLIKAM-PFEPD-EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAA 455 (610)
Q Consensus 378 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 455 (610)
+..+...+...|++++|...+++. ...|+ ...+..+...+...++++.|...+++.....|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445666677778888888877776 33343 3556666677777788888888888888888877777788888888888
Q ss_pred chhHHHHHHHHHhh
Q 037713 456 MWQHVSKVRKLMSV 469 (610)
Q Consensus 456 ~~~~a~~~~~~m~~ 469 (610)
++++|...++...+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 88888887776543
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.002 Score=55.35 Aligned_cols=125 Identities=14% Similarity=0.136 Sum_probs=72.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCH--HHHHHHH
Q 037713 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKP--NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSL--QHYTCLL 382 (610)
Q Consensus 307 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~li 382 (610)
|..++..+ ..++...+...++.+......- .......+...+...|++++|...|+.+... ...|+. .....|.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHH
Confidence 33444444 3666777777777776652211 1223334456666777777777777777664 222221 2344456
Q ss_pred HHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 037713 383 DLLSRSGHLDEAENLIKAMPFE-PDEPTWAALLSACKHHRNTEMGTRVANHL 433 (610)
Q Consensus 383 ~~~~~~g~~~~A~~~~~~m~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 433 (610)
..+...|++++|+..++..+.. .....+......+...|+.++|...|+++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 6677777777777777665222 23344455555677777777777777664
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0021 Score=58.07 Aligned_cols=181 Identities=13% Similarity=0.164 Sum_probs=133.8
Q ss_pred cCCHHHHHHHHHhcCC--------CCh-hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHhccCCH
Q 037713 286 CSDIIAAKDIFGRMRR--------KDV-VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGL-IYACSHVGLV 355 (610)
Q Consensus 286 ~g~~~~A~~~~~~~~~--------~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~ 355 (610)
..+.++..+++.++.. ++. ..|..++-+....|+.+.|...++++...- |...-...+ ..-+-..|.+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhch
Confidence 4578888888888752 232 234445566677899999999999988763 444332222 1223456889
Q ss_pred HHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 037713 356 GKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM--PFEPDEPTWAALLSACKHHRNTEMGTRVANHL 433 (610)
Q Consensus 356 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 433 (610)
++|.++++.+.++ -+.|..+|-.=+-+.-..|+--+|++-+... .+..|...|.-|...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 9999999999884 3566777777777777788877887776665 45568999999999999999999999999999
Q ss_pred hcCCCCCCcchHhHHHHhhhhc---chhHHHHHHHHHhhC
Q 037713 434 LSLKPEDPSSYILLSNVYASAA---MWQHVSKVRKLMSVM 470 (610)
Q Consensus 434 ~~~~p~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~ 470 (610)
+=..|-++..+..+++++.-.| +.+-+.+.+....+.
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 9999999888889999877665 445566666665543
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.72 E-value=4.5e-05 Score=45.66 Aligned_cols=31 Identities=29% Similarity=0.467 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 037713 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGV 233 (610)
Q Consensus 203 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 233 (610)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4678888888888888888888888877663
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.025 Score=55.24 Aligned_cols=108 Identities=17% Similarity=0.206 Sum_probs=78.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccc
Q 037713 173 SWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFA 252 (610)
Q Consensus 173 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~ 252 (610)
+.+..|.-+...|+...|.++-.+..-|+..-|-..+.+++..++|++-.++... + -.+..|..++.+|.+.|
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------k-KsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------K-KSPIGYEPFVEACLKYG 251 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------C-CCCCChHHHHHHHHHCC
Confidence 4555566667778888888888888778888888888888888888876655321 1 33477778888888888
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 037713 253 VLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFG 297 (610)
Q Consensus 253 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 297 (610)
...+|..+...+ .+..-+.+|.++|++.+|.+.--
T Consensus 252 ~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 252 NKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred CHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHH
Confidence 877777766551 12567788999999988866533
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.66 E-value=4.2e-05 Score=58.73 Aligned_cols=56 Identities=16% Similarity=0.202 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHH
Q 037713 409 TWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRK 465 (610)
Q Consensus 409 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 465 (610)
.|..+..++.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|.++++
T Consensus 27 ~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 27 YLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 333344445555555555555555 44444443444445555555555555555544
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00052 Score=56.63 Aligned_cols=96 Identities=11% Similarity=0.047 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC---CcchHhH
Q 037713 376 QHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD----EPTWAALLSACKHHRNTEMGTRVANHLLSLKPED---PSSYILL 447 (610)
Q Consensus 376 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l 447 (610)
.++..++..+.+.|++++|.+.|+++ ...|+ ...+..+...+...|+++.|...++.++...|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 45677888899999999999999988 33343 3456668888999999999999999999988875 4568899
Q ss_pred HHHhhhhcchhHHHHHHHHHhhCC
Q 037713 448 SNVYASAAMWQHVSKVRKLMSVME 471 (610)
Q Consensus 448 ~~~~~~~g~~~~a~~~~~~m~~~~ 471 (610)
+.++.+.|++++|.+.++.+.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 999999999999999999987653
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.16 Score=54.44 Aligned_cols=211 Identities=13% Similarity=0.077 Sum_probs=147.3
Q ss_pred ccCChHHHHHHHHHHHHhCCCCCCchHHHHHHHh--hcCCChHHHHHHHccCCC---CCcchHHHHHHHHHcCCCchHHH
Q 037713 15 RHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAY--GKCDLVQYAHHLLEEMPQ---RDHVSWASILTAYNQANLPQKTI 89 (610)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~--~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~ 89 (610)
..+....|.+-...+++.. |+. .|...+.++ .|.|+.++|..+++.... .|..|...+-..|...++.++|.
T Consensus 21 d~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHH
Confidence 4456677777777776653 332 345555555 578999999999987653 37788889999999999999999
Q ss_pred HHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCC----------hHHH
Q 037713 90 SIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGL----------PNNA 159 (610)
Q Consensus 90 ~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~----------~~~A 159 (610)
.+|+.... .-|+......+..++.+.+++..-.++--++-+. ++...+.+=++++.+...-. +.-|
T Consensus 98 ~~Ye~~~~---~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 98 HLYERANQ---KYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHh---hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 99999987 5688888888899999988887766665555553 45666666667776655321 2345
Q ss_pred HHHHHhcCCCC-h-hh---HHHHHHHHHhcCCHHHHHHHHhh-----CCCCChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 037713 160 RAVFDSIKLKN-S-VS---WTAMLSAYARSGRKKDAMEIFEQ-----APVRNLFLWTALVSGLVQSRNEIDAFYSFIEMR 229 (610)
Q Consensus 160 ~~~~~~m~~~~-~-~~---~~~li~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 229 (610)
.+.++.+.+.+ . .+ .-.-...+...|.+++|..++.. ...-+...-|--+..+...++|.+..++-.++.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 66666665443 1 11 11122334567889999988832 233344555566777888899999999999998
Q ss_pred HcC
Q 037713 230 REG 232 (610)
Q Consensus 230 ~~~ 232 (610)
..|
T Consensus 254 ~k~ 256 (932)
T KOG2053|consen 254 EKG 256 (932)
T ss_pred HhC
Confidence 888
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0036 Score=65.51 Aligned_cols=139 Identities=12% Similarity=0.067 Sum_probs=74.1
Q ss_pred CCChhHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcc--------CCHHHHHHHHHHhH
Q 037713 301 RKDVVSWTSIIVGTAQH-----GQAEETLALYDEMVSAGVKPNE-VTFVGLIYACSHV--------GLVGKGRKLFKSMI 366 (610)
Q Consensus 301 ~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~--------g~~~~a~~~~~~~~ 366 (610)
..|...|...+.+.... +....|..+|++..+. .|+. ..+..+..++... .++..+.+......
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 34677777777765432 2256788888888775 4553 3333332222111 11222233322222
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCC
Q 037713 367 EDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDP 441 (610)
Q Consensus 367 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 441 (610)
.......+...|..+.-.+...|++++|...++++ ...|+...|..+...+...|+.++|...+++++.++|.++
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 21012223455555555555556666666666665 4556665666666666666666666666666666666654
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00017 Score=52.96 Aligned_cols=64 Identities=13% Similarity=0.173 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhc-chhHHHHHHHHHhh
Q 037713 406 DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAA-MWQHVSKVRKLMSV 469 (610)
Q Consensus 406 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 469 (610)
++.+|..+...+...|++++|+..|+++++.+|+++..+..++.+|...| ++++|.+.++...+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46778888888999999999999999999999999999999999999999 79999998887654
|
... |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0012 Score=51.35 Aligned_cols=90 Identities=16% Similarity=0.157 Sum_probs=40.7
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchh
Q 037713 347 YACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTE 424 (610)
Q Consensus 347 ~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~ 424 (610)
..+...|++++|...++.+.+. .+.+...+..+...+...|++++|.+.+++. ...| +..++..+...+...|+.+
T Consensus 8 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 8 NLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHH
Confidence 3334444444444444444331 1122233444444444455555555555443 2222 2234444555555555555
Q ss_pred HHHHHHHHHhcCCC
Q 037713 425 MGTRVANHLLSLKP 438 (610)
Q Consensus 425 ~a~~~~~~~~~~~p 438 (610)
.|...+.+.++..|
T Consensus 86 ~a~~~~~~~~~~~~ 99 (100)
T cd00189 86 EALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHccCC
Confidence 55555555555444
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0033 Score=60.64 Aligned_cols=133 Identities=15% Similarity=0.221 Sum_probs=99.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 037713 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYA-CSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLD 383 (610)
Q Consensus 305 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 383 (610)
.+|..++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 468888888888888999999999988543 2233344433333 33356777799999999985 4566778889999
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC
Q 037713 384 LLSRSGHLDEAENLIKAM-PFEPDE----PTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440 (610)
Q Consensus 384 ~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 440 (610)
.+.+.|+.+.|..+|++. ..-|.. ..|...+.--.+.|+.+....+.+++.+..|.+
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 999999999999999987 323333 589999999999999999999999999888774
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.001 Score=61.74 Aligned_cols=92 Identities=15% Similarity=0.118 Sum_probs=69.4
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHH
Q 037713 349 CSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD-EPTWAALLSACKHHRNTEMG 426 (610)
Q Consensus 349 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a 426 (610)
..+.+++.+|+..|..+++ -.+-|...|..=..+|.+.|.++.|.+-.+.. .+.|. ..+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 4566788888888888776 23345566666677888888888888776665 55665 56788888888888888888
Q ss_pred HHHHHHHhcCCCCCCc
Q 037713 427 TRVANHLLSLKPEDPS 442 (610)
Q Consensus 427 ~~~~~~~~~~~p~~~~ 442 (610)
++.|+++++++|++..
T Consensus 169 ~~aykKaLeldP~Ne~ 184 (304)
T KOG0553|consen 169 IEAYKKALELDPDNES 184 (304)
T ss_pred HHHHHhhhccCCCcHH
Confidence 8888888888888763
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0022 Score=64.21 Aligned_cols=101 Identities=14% Similarity=0.097 Sum_probs=61.9
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhH
Q 037713 348 ACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEM 425 (610)
Q Consensus 348 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 425 (610)
.+...|++++|.+.|.++++. -+.+...|..+..+|.+.|++++|...++++ .+.| +...|..+..+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 344556666666666666552 2334455666666666666776666666666 3444 34556666666677777777
Q ss_pred HHHHHHHHhcCCCCCCcchHhHHHH
Q 037713 426 GTRVANHLLSLKPEDPSSYILLSNV 450 (610)
Q Consensus 426 a~~~~~~~~~~~p~~~~~~~~l~~~ 450 (610)
|+..|+++++++|+++.....+..+
T Consensus 89 A~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 89 AKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 7777777777777766555554444
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0039 Score=55.37 Aligned_cols=131 Identities=13% Similarity=0.152 Sum_probs=89.9
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHH
Q 037713 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN--EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380 (610)
Q Consensus 303 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 380 (610)
....+..+...+...|++++|...|++..+....|+ ...+..+..++.+.|++++|...+.+..+. .+.+...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHH
Confidence 455677778888888999999999988876543332 356777788888888888888888888763 2334566666
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcc
Q 037713 381 LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAM 456 (610)
Q Consensus 381 li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 456 (610)
+...|...|+...+..-++.. ...+++|.++++++++.+|++ |..+...+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 777777777766554332221 112678889999999988875 5555555554443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00036 Score=50.44 Aligned_cols=57 Identities=12% Similarity=0.191 Sum_probs=44.8
Q ss_pred HHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhh
Q 037713 413 LLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 413 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 469 (610)
+...+...|++++|+..|+++++.+|+++..+..++.++...|++++|...++...+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345577788888888888888888888888888888888888888888888887754
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0014 Score=58.31 Aligned_cols=81 Identities=15% Similarity=0.095 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHH
Q 037713 376 QHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD----EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNV 450 (610)
Q Consensus 376 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 450 (610)
..|..+...|.+.|++++|...|++. ...|+ ...+..+...+...|++++|...++++++..|.++..+..++.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34555566666666666666666655 22222 34566666677777888888888888887777777777777777
Q ss_pred hhhhcc
Q 037713 451 YASAAM 456 (610)
Q Consensus 451 ~~~~g~ 456 (610)
|...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 776665
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0066 Score=58.80 Aligned_cols=153 Identities=9% Similarity=0.027 Sum_probs=109.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHhccCCHHHHHHHHHHhHHhcCCCCCHHH------------
Q 037713 312 VGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIY--ACSHVGLVGKGRKLFKSMIEDYGITPSLQH------------ 377 (610)
Q Consensus 312 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~--a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~------------ 377 (610)
..+...|++++|...--...+.... +. +..+++ ++-..++.+.|...|++... ..|+-..
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~~-n~--~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDAT-NA--EALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcccc-hh--HHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHH
Confidence 3456678888888877666554211 22 222222 33356778888888877643 3444321
Q ss_pred -HHHHHHHHHhcCCHHHHHHHHHhC-CCC-----CCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHH
Q 037713 378 -YTCLLDLLSRSGHLDEAENLIKAM-PFE-----PDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNV 450 (610)
Q Consensus 378 -~~~li~~~~~~g~~~~A~~~~~~m-~~~-----p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 450 (610)
+..=.....+.|++.+|.+.+.+. .+. |+...|........+.|+.++|+.-.+++++++|.-..+|..-+++
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 111223456889999999999887 444 4566777777778899999999999999999999888899999999
Q ss_pred hhhhcchhHHHHHHHHHhhC
Q 037713 451 YASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 451 ~~~~g~~~~a~~~~~~m~~~ 470 (610)
+...++|++|.+-++...+.
T Consensus 331 ~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 99999999999988876543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.21 Score=52.00 Aligned_cols=246 Identities=9% Similarity=0.006 Sum_probs=117.7
Q ss_pred hHHHHHHHccCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCC--------hhhHHHHHHHHhccCCcHHHH
Q 037713 54 VQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPD--------HFVFASLVKACGSLGATRLGK 125 (610)
Q Consensus 54 ~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd--------~~~~~~ll~~~~~~~~~~~a~ 125 (610)
+++|.+..+.-|+ +..|..+...-.+.-.++-|...|-+.....+++.- ...-.+=+.++ -|.+++|+
T Consensus 679 ledA~qfiEdnPH--prLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeae 754 (1189)
T KOG2041|consen 679 LEDAIQFIEDNPH--PRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAE 754 (1189)
T ss_pred hHHHHHHHhcCCc--hHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhh
Confidence 4555555554443 345666665555555555565555544332112110 00001111122 26677777
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCC
Q 037713 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-----NSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200 (610)
Q Consensus 126 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 200 (610)
+++-.+-+.. ..+.++.+.|++-...++++.-... -...|+.+...++....|++|.+.+..-...
T Consensus 755 k~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~ 825 (1189)
T KOG2041|consen 755 KLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT 825 (1189)
T ss_pred hhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 7766554433 2456677777777766666553322 1346667777777666777776666543211
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 037713 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIV 280 (610)
Q Consensus 201 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 280 (610)
...+.++.+...+++-..+-+.+ |.|....-.+...+.+.|.-++|.+.|-. .+.+ .+-+
T Consensus 826 -----e~~~ecly~le~f~~LE~la~~L------pe~s~llp~~a~mf~svGMC~qAV~a~Lr---~s~p------kaAv 885 (1189)
T KOG2041|consen 826 -----ENQIECLYRLELFGELEVLARTL------PEDSELLPVMADMFTSVGMCDQAVEAYLR---RSLP------KAAV 885 (1189)
T ss_pred -----HhHHHHHHHHHhhhhHHHHHHhc------CcccchHHHHHHHHHhhchHHHHHHHHHh---ccCc------HHHH
Confidence 12233333333333332222222 13444455555666666666655554422 1111 1233
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChhHHHH--------------HHHHHHhcCChHHHHHHHHHHHH
Q 037713 281 DMYAKCSDIIAAKDIFGRMRRKDVVSWTS--------------IIVGTAQHGQAEETLALYDEMVS 332 (610)
Q Consensus 281 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~--------------li~~~~~~g~~~~A~~l~~~m~~ 332 (610)
..+...+++.+|.++-++..-|.+.+.-+ -|..+.+.|+.-+|-+++.+|.+
T Consensus 886 ~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 886 HTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 44455555666655555544333322111 12334445555555555555543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0014 Score=58.11 Aligned_cols=93 Identities=10% Similarity=-0.098 Sum_probs=73.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHH
Q 037713 374 SLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD----EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLS 448 (610)
Q Consensus 374 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 448 (610)
....|..+...+...|++++|...|++. .+.|+ ..+|..+...+...|++++|+..+++++++.|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3456677777888889999999988877 33333 347888888899999999999999999999998888888888
Q ss_pred HHhh-------hhcchhHHHHHHHH
Q 037713 449 NVYA-------SAAMWQHVSKVRKL 466 (610)
Q Consensus 449 ~~~~-------~~g~~~~a~~~~~~ 466 (610)
.+|. ..|++++|...++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHH
Confidence 8888 77787766655544
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0011 Score=66.30 Aligned_cols=89 Identities=13% Similarity=0.105 Sum_probs=78.6
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhH
Q 037713 382 LDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQH 459 (610)
Q Consensus 382 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 459 (610)
...+...|++++|++.|+++ ...| +...|..+..+|...|++++|+..++++++++|+++.+|..++.+|...|++++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 44566889999999999988 5555 466777888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhC
Q 037713 460 VSKVRKLMSVM 470 (610)
Q Consensus 460 a~~~~~~m~~~ 470 (610)
|...++...+.
T Consensus 89 A~~~~~~al~l 99 (356)
T PLN03088 89 AKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHh
Confidence 99999887653
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00091 Score=51.25 Aligned_cols=80 Identities=18% Similarity=0.309 Sum_probs=41.5
Q ss_pred cCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 037713 317 HGQAEETLALYDEMVSAGVK-PNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP-SLQHYTCLLDLLSRSGHLDEA 394 (610)
Q Consensus 317 ~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A 394 (610)
.|++++|+.+|+++.+.... |+...+..+..++.+.|++++|..+++. .+ ..| +......+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~---~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK---LDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT---HHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC---CCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 45666666666666654321 2333344456666666666666666655 11 112 223333445566666666666
Q ss_pred HHHHHh
Q 037713 395 ENLIKA 400 (610)
Q Consensus 395 ~~~~~~ 400 (610)
.+.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 666553
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0034 Score=53.52 Aligned_cols=88 Identities=13% Similarity=0.146 Sum_probs=75.5
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhH
Q 037713 382 LDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQH 459 (610)
Q Consensus 382 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 459 (610)
.--+-..|++++|..+|+-+ -..| |..-|..|...|...+++++|+..|..+..++++||.++...+..|...|+.+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 33455789999999999887 2222 455677888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 037713 460 VSKVRKLMSV 469 (610)
Q Consensus 460 a~~~~~~m~~ 469 (610)
|.+.+....+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 9999988764
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00096 Score=48.16 Aligned_cols=61 Identities=21% Similarity=0.327 Sum_probs=46.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCC
Q 037713 381 LLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDP 441 (610)
Q Consensus 381 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 441 (610)
+...+.+.|++++|.+.|++. ...| +...|..+...+...|++++|...++++++.+|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 455677888888888888888 5556 456677777788888999999999999988888764
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00082 Score=62.39 Aligned_cols=85 Identities=15% Similarity=0.183 Sum_probs=75.6
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHH
Q 037713 385 LSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSK 462 (610)
Q Consensus 385 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 462 (610)
+.+.+++++|+..|.+. .+.| |++.|..=..+|.+.|.++.|.+-.+..+.++|....+|..|+.+|...|++++|.+
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHH
Confidence 56789999999999988 6676 466667777789999999999999999999999999999999999999999999999
Q ss_pred HHHHHhh
Q 037713 463 VRKLMSV 469 (610)
Q Consensus 463 ~~~~m~~ 469 (610)
.|++..+
T Consensus 171 aykKaLe 177 (304)
T KOG0553|consen 171 AYKKALE 177 (304)
T ss_pred HHHhhhc
Confidence 9877643
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0094 Score=46.94 Aligned_cols=80 Identities=11% Similarity=0.210 Sum_probs=63.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhccC--------CHHHHHHHHHHhHHhcCCCCCHHH
Q 037713 307 WTSIIVGTAQHGQAEETLALYDEMVSAGV-KPNEVTFVGLIYACSHVG--------LVGKGRKLFKSMIEDYGITPSLQH 377 (610)
Q Consensus 307 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~ 377 (610)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-+.+.+++.|... +++|+..+
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~et 106 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDET 106 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHH
Confidence 34456666677999999999999999999 899999999998877653 244567788888875 88888888
Q ss_pred HHHHHHHHHh
Q 037713 378 YTCLLDLLSR 387 (610)
Q Consensus 378 ~~~li~~~~~ 387 (610)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 8888877654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.058 Score=52.20 Aligned_cols=166 Identities=7% Similarity=0.066 Sum_probs=81.1
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCC--CC--CHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 037713 208 LVSGLVQSRNEIDAFYSFIEMRREGVD--IV--DPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMY 283 (610)
Q Consensus 208 li~~~~~~g~~~~A~~~~~~m~~~~~~--~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 283 (610)
....|-..|++++|.+.|.+......+ .+ -...|......+.+ .+++.|...+.. .++.|
T Consensus 41 Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~---------------A~~~y 104 (282)
T PF14938_consen 41 AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYEK---------------AIEIY 104 (282)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHHH---------------HHHHH
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHHH---------------HHHHH
Confidence 455666667777777766665332110 01 01122222222222 244444444433 34456
Q ss_pred HhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhc-CChHHHHHHHHHHHH----cCCCCC--HHHHHHHHHHHhccCCHH
Q 037713 284 AKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQH-GQAEETLALYDEMVS----AGVKPN--EVTFVGLIYACSHVGLVG 356 (610)
Q Consensus 284 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~----~g~~p~--~~t~~~ll~a~~~~g~~~ 356 (610)
.+.|++..|-+++.. +...|-.. |++++|++.|++..+ .| .+. ..++..+...+.+.|+++
T Consensus 105 ~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~ 172 (282)
T PF14938_consen 105 REAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYE 172 (282)
T ss_dssp HHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HH
T ss_pred HhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHH
Confidence 666666666554443 44555555 677777777766543 22 111 234555666677777777
Q ss_pred HHHHHHHHhHHhcC----CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037713 357 KGRKLFKSMIEDYG----ITPSL-QHYTCLLDLLSRSGHLDEAENLIKAM 401 (610)
Q Consensus 357 ~a~~~~~~~~~~~~----~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m 401 (610)
+|.++|++.....- ...+. ..|-..+-++...|+...|.+.+++.
T Consensus 173 ~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 173 EAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp HHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777777665311 11122 22333344555667777777777765
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.053 Score=49.50 Aligned_cols=138 Identities=11% Similarity=0.132 Sum_probs=103.7
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHh-----CCCCchhHHH
Q 037713 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIAL-----GYESCLFISN 277 (610)
Q Consensus 203 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~ 277 (610)
..-+.++..+...|.+.-.+.++.+.++...+ .++...+.+.+.--+.|+.+.+...++.+.+. ++..+..+..
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e-~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPE-QEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCc-ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence 34566777778888898899999999887755 78888888888889999999999999977765 3334444445
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 037713 278 AIVDMYAKCSDIIAAKDIFGRMRRK---DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFV 343 (610)
Q Consensus 278 ~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 343 (610)
.....|.-.+++..|...|.+++.. |++.-|.-.-...-.|+..+|++..+.|.+. .|...+-+
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 5555677788999999999888753 5566666555556678999999999999886 44444433
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.47 Score=50.06 Aligned_cols=353 Identities=10% Similarity=0.083 Sum_probs=206.2
Q ss_pred HHcCCCchHHHHHHHHh--------HHCCCCCCChhhHHH-----HHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHH
Q 037713 79 YNQANLPQKTISIFSTM--------LALDKLQPDHFVFAS-----LVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSS 145 (610)
Q Consensus 79 ~~~~g~~~~A~~~~~~m--------~~~~~~~pd~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 145 (610)
+.+.-++++-+.+-+.. ..-| ++.+..-|.. +++-+...+.+..|.++-..+...-... ..++..
T Consensus 399 ~l~~~~~d~~~~v~~~lrVln~~r~~~~g-IplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~ 476 (829)
T KOG2280|consen 399 SLRTPNPDEYMRVCRELRVLNALRDVRIG-IPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLE 476 (829)
T ss_pred ccccCChHHHHHHHHHHHHHhhhcccccC-ccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHH
Confidence 34445555554444332 2334 5555555544 4555666778888888877764322222 567777
Q ss_pred HHHHHHhCCC---hHHHHHHHHhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHhhCCCC--------ChhhHHHHHHHH
Q 037713 146 LVDMYAKCGL---PNNARAVFDSIKL--KNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR--------NLFLWTALVSGL 212 (610)
Q Consensus 146 li~~~~~~g~---~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~ 212 (610)
...-+.+..+ -+.+..+-+++.. ...++|.......-.+|+.+-|..+.+.=+.. +..-+...+.-.
T Consensus 477 Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~ka 556 (829)
T KOG2280|consen 477 WARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKA 556 (829)
T ss_pred HHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHH
Confidence 7777777643 2333444444544 46778888888888999999999998764322 222344555566
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 037713 213 VQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAA 292 (610)
Q Consensus 213 ~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 292 (610)
.+.|+.+-...++..|.+.- +...+... ..+.-.|..+|.+..+..-. ..|-+.|-...+...+
T Consensus 557 ies~d~~Li~~Vllhlk~~~----~~s~l~~~------l~~~p~a~~lY~~~~r~~~~------~~l~d~y~q~dn~~~~ 620 (829)
T KOG2280|consen 557 IESGDTDLIIQVLLHLKNKL----NRSSLFMT------LRNQPLALSLYRQFMRHQDR------ATLYDFYNQDDNHQAL 620 (829)
T ss_pred HhcCCchhHHHHHHHHHHHH----HHHHHHHH------HHhchhhhHHHHHHHHhhch------hhhhhhhhcccchhhh
Confidence 67777777777666665432 11111111 11223344555554442211 1222333333333222
Q ss_pred HHHHHhc------CCCChhHHHHHHHHHHhcCC----------hHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHhccCCH
Q 037713 293 KDIFGRM------RRKDVVSWTSIIVGTAQHGQ----------AEETLALYDEMVS-AGVKPNEVTFVGLIYACSHVGLV 355 (610)
Q Consensus 293 ~~~~~~~------~~~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~ 355 (610)
-.+--+- ..+-.........++++... ..+-+.+.+.+.. .|..-...|.+--+.-+...|+.
T Consensus 621 a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~ 700 (829)
T KOG2280|consen 621 ASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQN 700 (829)
T ss_pred hhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccch
Confidence 2111111 01111222223333443322 1122223333322 23334455666677778888999
Q ss_pred HHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhc
Q 037713 356 GKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLS 435 (610)
Q Consensus 356 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 435 (610)
.+|.++-.+. . -||...|-.=+.+++..+++++-+++-+.+. .+.-|.-+..+|.+.|+.++|..++-+.-.
T Consensus 701 k~a~ql~~~F----k-ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~ 772 (829)
T KOG2280|consen 701 KRAEQLKSDF----K-IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGG 772 (829)
T ss_pred HHHHHHHHhc----C-CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCC
Confidence 9999886654 3 4788899889999999999999988888873 255677889999999999999998765422
Q ss_pred CCCCCCcchHhHHHHhhhhcchhHHHHHHH
Q 037713 436 LKPEDPSSYILLSNVYASAAMWQHVSKVRK 465 (610)
Q Consensus 436 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 465 (610)
+.-...+|.+.|++.+|.+.--
T Consensus 773 --------l~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 773 --------LQEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred --------hHHHHHHHHHhccHHHHHHHHH
Confidence 2267889999999999987643
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0011 Score=49.13 Aligned_cols=56 Identities=13% Similarity=0.183 Sum_probs=48.1
Q ss_pred HHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhC
Q 037713 415 SACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 415 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 470 (610)
..+.+.++++.|.++++++++++|+++..+...+.+|.+.|++++|.+.++...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45778888999999999999999988888888999999999999999888887654
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.37 Score=50.77 Aligned_cols=109 Identities=16% Similarity=0.177 Sum_probs=78.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 037713 276 SNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLV 355 (610)
Q Consensus 276 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 355 (610)
.+--+.-+...|+..+|.++-.+.+-||-..|---+.+++..+++++-+++-+.++ .+.-|.-...+|.+.|+.
T Consensus 687 l~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~ 760 (829)
T KOG2280|consen 687 LHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNK 760 (829)
T ss_pred HHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccH
Confidence 33344455667888888888888888888888888888888888877776655543 245566678888888888
Q ss_pred HHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 037713 356 GKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKA 400 (610)
Q Consensus 356 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 400 (610)
++|.+++.... |. . -.+.+|.+.|++.+|.++--+
T Consensus 761 ~EA~KYiprv~---~l---~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 761 DEAKKYIPRVG---GL---Q----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHhhhhhccC---Ch---H----HHHHHHHHhccHHHHHHHHHH
Confidence 88888876541 11 1 467788888888888765433
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0042 Score=58.14 Aligned_cols=106 Identities=11% Similarity=0.088 Sum_probs=86.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh---cCchhHHHHHHHHHhcCCCCCCcchH
Q 037713 371 ITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKH---HRNTEMGTRVANHLLSLKPEDPSSYI 445 (610)
Q Consensus 371 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~ 445 (610)
-+-|...|..|...|.+.|+++.|..-|.+. .+.| +...+..+..++.. .....++..++++++.++|.|..+..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 3557899999999999999999999999887 4444 45566666666332 23567899999999999999999999
Q ss_pred hHHHHhhhhcchhHHHHHHHHHhhCCCccCC
Q 037713 446 LLSNVYASAAMWQHVSKVRKLMSVMEVKKEP 476 (610)
Q Consensus 446 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 476 (610)
.|+..+...|++.+|...++.|.+.....+|
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 9999999999999999999999876555444
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00048 Score=50.27 Aligned_cols=52 Identities=12% Similarity=0.299 Sum_probs=39.7
Q ss_pred HhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhh
Q 037713 418 KHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 418 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 469 (610)
...|++++|++.++++++.+|+++.....++.+|.+.|++++|.++++.+..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3567788888888888888888888888888888888888888887776653
|
... |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.071 Score=52.59 Aligned_cols=161 Identities=17% Similarity=0.109 Sum_probs=104.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC-------ChhHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037713 278 AIVDMYAKCSDIIAAKDIFGRMRRK-------DVVSWTSIIVGTAQ---HGQAEETLALYDEMVSAGVKPNEVTFVGLIY 347 (610)
Q Consensus 278 ~li~~y~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 347 (610)
.|+-.|....+++...++++.+... ....--...-++.+ .|+.++|++++..+......++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4555688888888888888888753 11222233445556 7888999999988776667778888877766
Q ss_pred HHhc---------cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHH----HHHHH---HhC----C---CC
Q 037713 348 ACSH---------VGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDE----AENLI---KAM----P---FE 404 (610)
Q Consensus 348 a~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~---~~m----~---~~ 404 (610)
.|-. ....++|...|.+. +.+.|+..+--.++..+...|...+ ..++- ... + -.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5542 23467777777765 4456665443333334444443222 22221 111 1 22
Q ss_pred CCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCC
Q 037713 405 PDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDP 441 (610)
Q Consensus 405 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 441 (610)
.+-..+.+++.++.-.|+.++|.+.++++..+.|+..
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 4566677899999999999999999999999988754
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.012 Score=49.97 Aligned_cols=95 Identities=11% Similarity=-0.012 Sum_probs=60.5
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 037713 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281 (610)
Q Consensus 202 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 281 (610)
....-.+..-+.+.|++++|..+|+.+....+ -+...|-.+..+|...|++++|...+..+.... +.|+..+-.+..
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp--~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~ 111 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDA--WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 33334445556666777777777776666552 455556666666666777777777777776665 345666666677
Q ss_pred HHHhcCCHHHHHHHHHhc
Q 037713 282 MYAKCSDIIAAKDIFGRM 299 (610)
Q Consensus 282 ~y~~~g~~~~A~~~~~~~ 299 (610)
+|.+.|+.+.|++.|+..
T Consensus 112 c~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 112 CYLACDNVCYAIKALKAV 129 (157)
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 777777777777766654
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0069 Score=53.93 Aligned_cols=97 Identities=21% Similarity=0.293 Sum_probs=73.5
Q ss_pred HHHHHhc--CCCChhHHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC------------
Q 037713 293 KDIFGRM--RRKDVVSWTSIIVGTAQ-----HGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVG------------ 353 (610)
Q Consensus 293 ~~~~~~~--~~~~~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g------------ 353 (610)
...|+.. ..+|-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.||+.+=+..
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 4455555 45677888888888775 4677777888899999999999999999999877532
Q ss_pred ----CHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCC
Q 037713 354 ----LVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGH 390 (610)
Q Consensus 354 ----~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 390 (610)
+-+-|++++++|.. +|+-||.+++..|++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 23567788888866 5888888888888888776654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0081 Score=57.93 Aligned_cols=124 Identities=12% Similarity=0.045 Sum_probs=66.0
Q ss_pred hHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHh-CCChHHHHHHHHhcC---CCChhhHHHHHHHHH
Q 037713 107 VFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAK-CGLPNNARAVFDSIK---LKNSVSWTAMLSAYA 182 (610)
Q Consensus 107 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~ 182 (610)
+|..+++.+-+.+..+.|+.+|.++.+.+ ..+..+|-....+-.+ .++.+.|.++|+... ..+...|..-++.+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 45555555555555666666666665433 2222333333333222 344444666666554 235555556566666
Q ss_pred hcCCHHHHHHHHhhCCCC------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 037713 183 RSGRKKDAMEIFEQAPVR------NLFLWTALVSGLVQSRNEIDAFYSFIEMRRE 231 (610)
Q Consensus 183 ~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 231 (610)
+.++.+.|+.+|++.... -...|...+.-=.+.|+.+.+.++.+++.+.
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 666666666666654432 2246777777777777777777777777664
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.043 Score=53.14 Aligned_cols=98 Identities=15% Similarity=0.139 Sum_probs=64.5
Q ss_pred HHHHHHHHhcc-CCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHhCC---CC-----CCHH
Q 037713 342 FVGLIYACSHV-GLVGKGRKLFKSMIEDYGITPS----LQHYTCLLDLLSRSGHLDEAENLIKAMP---FE-----PDEP 408 (610)
Q Consensus 342 ~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~-----p~~~ 408 (610)
+..+...|... |++++|.+.|+...+-+..... ...+..+...+.+.|++++|.++|++.. .. .+..
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~ 196 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAK 196 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHH
Confidence 34455567777 8999999999888765432222 2556778888999999999999998871 11 1121
Q ss_pred -HHHHHHHHHHhcCchhHHHHHHHHHhcCCCC
Q 037713 409 -TWAALLSACKHHRNTEMGTRVANHLLSLKPE 439 (610)
Q Consensus 409 -~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 439 (610)
.+...+-.+...||+..|...+++..+.+|.
T Consensus 197 ~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 197 EYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 1222333456678999999999999988875
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.39 Score=47.70 Aligned_cols=440 Identities=12% Similarity=0.086 Sum_probs=218.4
Q ss_pred ccCChHHHHHHHHHHHHhCCCCC-----CchHHHHHHHhhcCCChHHHHHHHccCCCC-CcchHHHHHHHH--HcCCCch
Q 037713 15 RHQIALTVKTLHAQIIKLGLHQY-----GPLPNTLIDAYGKCDLVQYAHHLLEEMPQR-DHVSWASILTAY--NQANLPQ 86 (610)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-~~~~~~~li~~~--~~~g~~~ 86 (610)
+.++..++..++..+.+..-... ....+.++++|.. .+++..........+. ....|-.+..++ -+.+.+.
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~ 96 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYR 96 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHH
Confidence 56788889999988876542211 2234677777764 3444444443333321 133466665554 4678888
Q ss_pred HHHHHHHHhHHC--CCCCC------------ChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCC----CCChhHHHHHHH
Q 037713 87 KTISIFSTMLAL--DKLQP------------DHFVFASLVKACGSLGATRLGKQVHACFVLSPF----CDDDVVKSSLVD 148 (610)
Q Consensus 87 ~A~~~~~~m~~~--~~~~p------------d~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~----~~~~~~~~~li~ 148 (610)
.|++.|...... + ..| |-+.=+.....+...|.+.+|+.+++++...=+ .-+..+||.++-
T Consensus 97 kal~~ls~w~~~~~~-~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vl 175 (549)
T PF07079_consen 97 KALQALSVWKEQIKG-TESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVL 175 (549)
T ss_pred HHHHHHHHHHhhhcc-cccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHH
Confidence 888888776654 2 222 111122334556678888888888877765433 367778887777
Q ss_pred HHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhC--CChHHHHHHHH
Q 037713 149 MYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQS--RNEIDAFYSFI 226 (610)
Q Consensus 149 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~ 226 (610)
++++.=-++ +-+.+...=..-|.-||-.|.+.=+.-++...=.-.++ ......++.-..-. .+..--++++.
T Consensus 176 mlsrSYfLE----l~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~pe--eeL~s~imqhlfi~p~e~l~~~mq~l~ 249 (549)
T PF07079_consen 176 MLSRSYFLE----LKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPE--EELFSTIMQHLFIVPKERLPPLMQILE 249 (549)
T ss_pred HHhHHHHHH----HHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcH--HHHHHHHHHHHHhCCHhhccHHHHHHH
Confidence 766532111 11111111223445555555433211111100000000 00001111111000 11111122222
Q ss_pred HHHHcCCCCCCH-hHHHHHHHHHhccccHHHHHHHHHHHHHhCCCC----chhHHHHHHHHHHhcCCHHHHHHHHHhcC-
Q 037713 227 EMRREGVDIVDP-LVLSSIVGACANFAVLELGKQIHGLVIALGYES----CLFISNAIVDMYAKCSDIIAAKDIFGRMR- 300 (610)
Q Consensus 227 ~m~~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~li~~y~~~g~~~~A~~~~~~~~- 300 (610)
.-.+.-+. |+. .....+.....+ +.+++..+-+.+....+.+ =+.++..++....+.++...|.+.+.-+.
T Consensus 250 ~We~~yv~-p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ 326 (549)
T PF07079_consen 250 NWENFYVH-PNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI 326 (549)
T ss_pred HHHhhccC-CchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 22333343 332 223333333333 3344444433333322111 12345556666667777777776665544
Q ss_pred -CCChhH-------HHHHHHHHH----hcCChHHHHHHHHHHHHcCCCCCH-HHH-HHHHHHHhccCC-HHHHHHHHHHh
Q 037713 301 -RKDVVS-------WTSIIVGTA----QHGQAEETLALYDEMVSAGVKPNE-VTF-VGLIYACSHVGL-VGKGRKLFKSM 365 (610)
Q Consensus 301 -~~~~~~-------~~~li~~~~----~~g~~~~A~~l~~~m~~~g~~p~~-~t~-~~ll~a~~~~g~-~~~a~~~~~~~ 365 (610)
+|+... -.++-+..+ ..-+...=+.+|+......+.-.. +.| ..-..-+-+.|. -++|.++++.+
T Consensus 327 ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~i 406 (549)
T PF07079_consen 327 LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLI 406 (549)
T ss_pred cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 232210 111111122 112233445555555544332111 111 111122334444 67788887777
Q ss_pred HHhcCCCCCHHHHHHHHH----HHHhc---CC---HHHHHHHHHhCCCCC----CHHHHHHHHHH--HHhcCchhHHHHH
Q 037713 366 IEDYGITPSLQHYTCLLD----LLSRS---GH---LDEAENLIKAMPFEP----DEPTWAALLSA--CKHHRNTEMGTRV 429 (610)
Q Consensus 366 ~~~~~~~~~~~~~~~li~----~~~~~---g~---~~~A~~~~~~m~~~p----~~~~~~~ll~~--~~~~g~~~~a~~~ 429 (610)
.+- -+-|...-|.+.. .|..+ .. +-+-+.++++.++.| +...-|.|..| +..+|++.++.-.
T Consensus 407 l~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~y 484 (549)
T PF07079_consen 407 LQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLY 484 (549)
T ss_pred HHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 552 1223333332221 22211 11 112234455556655 45566777777 6789999999999
Q ss_pred HHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHh
Q 037713 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMS 468 (610)
Q Consensus 430 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 468 (610)
-..+.+..| ++.+|..++-.+....++++|..++..+.
T Consensus 485 s~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 485 SSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 999999999 78999999999999999999999988763
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0071 Score=47.61 Aligned_cols=80 Identities=6% Similarity=-0.000 Sum_probs=66.1
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHhHHCCCC-CCChhhHHHHHHHHhccC--------CcHHHHHHHHHHHhcCCCCChhH
Q 037713 72 WASILTAYNQANLPQKTISIFSTMLALDKL-QPDHFVFASLVKACGSLG--------ATRLGKQVHACFVLSPFCDDDVV 142 (610)
Q Consensus 72 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~pd~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~ 142 (610)
-...|..+...+++.....+|+.+++.| + .|+..+|+.++.+.++.. .+-....+++.|+..++.|+..+
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~-i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNG-ITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcC-CCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 3445666667799999999999999999 8 899999999999877543 23356788999999999999999
Q ss_pred HHHHHHHHHh
Q 037713 143 KSSLVDMYAK 152 (610)
Q Consensus 143 ~~~li~~~~~ 152 (610)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999987764
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.014 Score=51.52 Aligned_cols=81 Identities=12% Similarity=0.093 Sum_probs=53.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHH
Q 037713 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN--EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381 (610)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 381 (610)
...|..+...+...|++++|+..|++.......|. ..++..+...+...|++++|...++...+. .+.....+..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHH
Confidence 45566677777778888888888888776532322 346777777888888888888888777652 22233455555
Q ss_pred HHHHH
Q 037713 382 LDLLS 386 (610)
Q Consensus 382 i~~~~ 386 (610)
...|.
T Consensus 113 a~i~~ 117 (168)
T CHL00033 113 AVICH 117 (168)
T ss_pred HHHHH
Confidence 55555
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.051 Score=46.93 Aligned_cols=132 Identities=9% Similarity=0.089 Sum_probs=101.7
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHHHH
Q 037713 335 VKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP---DEPTW 410 (610)
Q Consensus 335 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~ 410 (610)
..|+...-..|..+....|+..+|...|++...- -+.-|....-.+.++....+++.+|...+++. ...| .+.+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 4677777778888999999999999999988762 34556778888888888999999999988887 1112 22334
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHh
Q 037713 411 AALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMS 468 (610)
Q Consensus 411 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 468 (610)
..+...+...|.++.|+..|+.++.--|. +..-......+.++|+.+++..-+..+.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 45667799999999999999999988874 5666677888999998888776554443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.02 Score=49.38 Aligned_cols=106 Identities=17% Similarity=0.240 Sum_probs=91.6
Q ss_pred HhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCC-
Q 037713 364 SMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM---PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE- 439 (610)
Q Consensus 364 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~- 439 (610)
+..+.....|++..-..|..++.+.|+..||...|++. .+.-|......+..+....+++..|...++++.+.+|.
T Consensus 78 ea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~ 157 (251)
T COG4700 78 EATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAF 157 (251)
T ss_pred HHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCcc
Confidence 33344466788888889999999999999999999988 45567888888999999999999999999999998875
Q ss_pred -CCcchHhHHHHhhhhcchhHHHHHHHHHhh
Q 037713 440 -DPSSYILLSNVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 440 -~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 469 (610)
.|.....+++.|...|++++|+..++...+
T Consensus 158 r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 158 RSPDGHLLFARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred CCCCchHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 567788999999999999999999988764
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0097 Score=59.82 Aligned_cols=117 Identities=14% Similarity=0.041 Sum_probs=63.5
Q ss_pred CCHhHHHHHHHHHhccccHHHHHHHHHHHHHh--CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhHHHH
Q 037713 236 VDPLVLSSIVGACANFAVLELGKQIHGLVIAL--GYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR----KDVVSWTS 309 (610)
Q Consensus 236 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~ 309 (610)
.++..+..++..+....+++.+..++-..... ....-..+..++|..|.+.|..+.+..+++.=.. ||..++|.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 45555555666666655666665555554443 1111223334566666666666666655554332 45666666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 037713 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHV 352 (610)
Q Consensus 310 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 352 (610)
+|..+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 6666666666666666666655555555555555555544443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0019 Score=47.21 Aligned_cols=65 Identities=17% Similarity=0.223 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-chhHHHHHHHHHhcCCC
Q 037713 374 SLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHR-NTEMGTRVANHLLSLKP 438 (610)
Q Consensus 374 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 438 (610)
+...|..+...+.+.|++++|+..|++. ...| +...|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3456777777778888888888887776 4445 3566777777788888 68888888888888776
|
... |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.011 Score=59.46 Aligned_cols=120 Identities=13% Similarity=0.109 Sum_probs=96.6
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-C-----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 037713 268 GYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR-K-----DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341 (610)
Q Consensus 268 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 341 (610)
+.+.+......+++......+++.+..++.+... | -..|..++|..|...|..++++.+++.=...|+-||..|
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 3445555666677777777788889888887764 2 234567999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhc
Q 037713 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRS 388 (610)
Q Consensus 342 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 388 (610)
|+.|+..+.+.|++..|.++...|+.. ....+..++..-+.++.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQ-e~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQ-EEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHh
Confidence 999999999999999999999988875 5666666666655555555
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0061 Score=58.90 Aligned_cols=256 Identities=13% Similarity=0.044 Sum_probs=147.7
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCCHh----HHHHHHHHHhccccHHHHHHHHHHHHHh----CCC-CchhHHHHHHH
Q 037713 211 GLVQSRNEIDAFYSFIEMRREGVDIVDPL----VLSSIVGACANFAVLELGKQIHGLVIAL----GYE-SCLFISNAIVD 281 (610)
Q Consensus 211 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~ 281 (610)
-+++.|+....+.+|+..++.|- .|-. .|+.+-.+|.-.+++++|.++|..=+.. |-. -.......|.+
T Consensus 26 RLck~gdcraGv~ff~aA~qvGT--eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGT--EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcc--hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 35666777777777777777663 2333 3444555666667777777766432211 100 01111122333
Q ss_pred HHHhcCCHHHHHHHHHhcCC-------C--ChhHHHHHHHHHHhcCC--------------------hHHHHHHHHHH--
Q 037713 282 MYAKCSDIIAAKDIFGRMRR-------K--DVVSWTSIIVGTAQHGQ--------------------AEETLALYDEM-- 330 (610)
Q Consensus 282 ~y~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~--------------------~~~A~~l~~~m-- 330 (610)
.+--.|.+++|.-.-.+-.. + ...++..+...|...|+ .+.|.++|.+=
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 33344555555433222110 0 12233334444433321 23344444332
Q ss_pred --HHcCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHh---HHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC--
Q 037713 331 --VSAGVK-PNEVTFVGLIYACSHVGLVGKGRKLFKSM---IEDYGITPS-LQHYTCLLDLLSRSGHLDEAENLIKAM-- 401 (610)
Q Consensus 331 --~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~---~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m-- 401 (610)
...|-. .....|..|.+.|.-.|+++.|+..++.- .+.+|-... ...+..|..++.-.|+++.|.+.++..
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 111111 11245666777777788999998776532 233443332 356788888888899999999988765
Q ss_pred -----CC-CCCHHHHHHHHHHHHhcCchhHHHHHHHHHhc----CC--CCCCcchHhHHHHhhhhcchhHHHHHHHHHh
Q 037713 402 -----PF-EPDEPTWAALLSACKHHRNTEMGTRVANHLLS----LK--PEDPSSYILLSNVYASAAMWQHVSKVRKLMS 468 (610)
Q Consensus 402 -----~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 468 (610)
+. .....+..+|..+|.-..+++.|+.++.+=+. ++ .....++..|+++|...|..+.|..+.+.-.
T Consensus 264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 21 22456677888899888999999998876542 22 2235688899999999999999988776654
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.31 Score=45.80 Aligned_cols=53 Identities=11% Similarity=0.043 Sum_probs=25.7
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 037713 346 IYACSHVGLVGKGRKLFKSMIEDYGITPS-LQHYTCLLDLLSRSGHLDEAENLI 398 (610)
Q Consensus 346 l~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~ 398 (610)
..-|.+.|.+..|..-++.+++++.-.|. .+....++.+|.+.|..++|.+..
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~ 235 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVA 235 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34455555555555555555554432222 234444555555555555555443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0043 Score=45.13 Aligned_cols=61 Identities=21% Similarity=0.371 Sum_probs=31.5
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 037713 351 HVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPDEPTWAAL 413 (610)
Q Consensus 351 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l 413 (610)
..|++++|.++|+.+.+. .+-+...+..+..+|.+.|++++|.++++++ ...|+...|..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 345555666666655542 2234455555566666666666666666655 334554444333
|
... |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.031 Score=58.65 Aligned_cols=135 Identities=12% Similarity=0.098 Sum_probs=97.6
Q ss_pred cCCCCCHHHHHHHHHHHhcc-----CCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhc--------CCHHHHHHHH
Q 037713 333 AGVKPNEVTFVGLIYACSHV-----GLVGKGRKLFKSMIEDYGITPS-LQHYTCLLDLLSRS--------GHLDEAENLI 398 (610)
Q Consensus 333 ~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~--------g~~~~A~~~~ 398 (610)
.+.+.|...|...+++.... +..+.|..+|++..+ ..|+ ...|..+..+|... +++..+.+..
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~ 407 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTEL 407 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 34566788888888875543 237789999999987 3565 35555544444322 2234555555
Q ss_pred HhC---C-CCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhCC
Q 037713 399 KAM---P-FEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVME 471 (610)
Q Consensus 399 ~~m---~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 471 (610)
++. + ...+...|..+.-.....|++++|...++++++++| +..+|..++.+|...|+.++|...++......
T Consensus 408 ~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 408 DNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 543 1 233556777776667778999999999999999999 47899999999999999999999998876443
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.00043 Score=42.19 Aligned_cols=32 Identities=19% Similarity=0.419 Sum_probs=30.2
Q ss_pred HHHHhcCCCCCCcchHhHHHHhhhhcchhHHH
Q 037713 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461 (610)
Q Consensus 430 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 461 (610)
++++++++|+++.+|..|+.+|...|++++|.
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67889999999999999999999999999986
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0063 Score=54.16 Aligned_cols=100 Identities=11% Similarity=0.168 Sum_probs=79.0
Q ss_pred HHHHHHccC--CCCCcchHHHHHHHHHcC-----CCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccC---------
Q 037713 56 YAHHLLEEM--PQRDHVSWASILTAYNQA-----NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLG--------- 119 (610)
Q Consensus 56 ~A~~~f~~m--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~--------- 119 (610)
.-...|+.. ..+|-.+|..++..|.+. |..+=....+..|.+-| +.-|..+|+.||+.+=+..
T Consensus 32 ~~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efg-v~kDL~~Y~~LLDvFPKg~fvp~n~fQ~ 110 (228)
T PF06239_consen 32 PHEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFG-VEKDLEVYKALLDVFPKGKFVPRNFFQA 110 (228)
T ss_pred chHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcC-CcccHHHHHHHHHhCCCCCcccccHHHH
Confidence 344566665 467888888888888754 55666667788899988 9999999999998875421
Q ss_pred -------CcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCh
Q 037713 120 -------ATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLP 156 (610)
Q Consensus 120 -------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 156 (610)
+-+-|..++++|...|+-||..++..|++.+++.+..
T Consensus 111 ~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 111 EFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 4467899999999999999999999999999877653
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.51 Score=45.95 Aligned_cols=247 Identities=16% Similarity=0.159 Sum_probs=158.0
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCCHhHH----HHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 037713 214 QSRNEIDAFYSFIEMRREGVDIVDPLVL----SSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDI 289 (610)
Q Consensus 214 ~~g~~~~A~~~~~~m~~~~~~~p~~~t~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 289 (610)
-.|++++|.+-|+.|.. |+.|- ..+.-...+.|+.+.++++-+...... +.-.-.+.++++..+..|++
T Consensus 132 ~eG~~~~Ar~kfeAMl~------dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdW 204 (531)
T COG3898 132 LEGDYEDARKKFEAMLD------DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDW 204 (531)
T ss_pred hcCchHHHHHHHHHHhc------ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCCh
Confidence 35777777777777763 22222 223333356777788877777665543 22245677888889999999
Q ss_pred HHHHHHHHhcCC-----CChh--HHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhccCCHHHH
Q 037713 290 IAAKDIFGRMRR-----KDVV--SWTSIIVGTAQ---HGQAEETLALYDEMVSAGVKPNEVT-FVGLIYACSHVGLVGKG 358 (610)
Q Consensus 290 ~~A~~~~~~~~~-----~~~~--~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a 358 (610)
+.|+++.+.-.. +|+. .-..|+.+-+. .-+...|...-.+..+ +.||.+- -..-..++.+.|++.++
T Consensus 205 d~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg 282 (531)
T COG3898 205 DGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKG 282 (531)
T ss_pred HHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhh
Confidence 999999887653 4432 22333333222 2345556555544443 5666443 23345788999999999
Q ss_pred HHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH----HHHHhCCCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHH
Q 037713 359 RKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAE----NLIKAMPFEPD-EPTWAALLSACKHHRNTEMGTRVANHL 433 (610)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~----~~~~~m~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~ 433 (610)
-.+++.+-+ ..|.+.++...+ +.+.|+..... +-++. ++|| ......+..+-...|++..|..-.+.+
T Consensus 283 ~~ilE~aWK---~ePHP~ia~lY~--~ar~gdta~dRlkRa~~L~s--lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa 355 (531)
T COG3898 283 SKILETAWK---AEPHPDIALLYV--RARSGDTALDRLKRAKKLES--LKPNNAESSLAVAEAALDAGEFSAARAKAEAA 355 (531)
T ss_pred hhHHHHHHh---cCCChHHHHHHH--HhcCCCcHHHHHHHHHHHHh--cCccchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 999999854 567776655444 34556533221 12233 3454 566667778888899999999999999
Q ss_pred hcCCCCCCcchHhHHHHhhhh-cchhHHHHHHHHHhhCCCccCCccc
Q 037713 434 LSLKPEDPSSYILLSNVYASA-AMWQHVSKVRKLMSVMEVKKEPGYS 479 (610)
Q Consensus 434 ~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~s 479 (610)
....|.. ..|.+|.++-... |+-.++...+.+-.. -..+|.|+
T Consensus 356 ~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~--APrdPaW~ 399 (531)
T COG3898 356 AREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVK--APRDPAWT 399 (531)
T ss_pred hhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhc--CCCCCccc
Confidence 9999964 7899999987554 888888777665543 23455543
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.24 Score=46.58 Aligned_cols=172 Identities=11% Similarity=0.013 Sum_probs=93.4
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCC---hhh---HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhc--
Q 037713 179 SAYARSGRKKDAMEIFEQAPVRN---LFL---WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACAN-- 250 (610)
Q Consensus 179 ~~~~~~g~~~~A~~~~~~~~~~~---~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~-- 250 (610)
..+.+.|++++|.+.|+++.... ... .-.+..+|.+.+++++|...|++..+..+..|+. -+...+.+.+.
T Consensus 40 ~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~~a~Y~~g~~~~~ 118 (243)
T PRK10866 40 QQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DYVLYMRGLTNMA 118 (243)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-HHHHHHHHHhhhh
Confidence 33344556666666665554321 111 1234566777788888888888877765442332 22222222111
Q ss_pred c---------------ccH---HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHH
Q 037713 251 F---------------AVL---ELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIV 312 (610)
Q Consensus 251 ~---------------~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 312 (610)
. .+. ..|...+ ..+++-|-...-..+|..-+..+...=...--.+..
T Consensus 119 ~~~~~~~~~~~~~~~~rD~~~~~~A~~~~---------------~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~ 183 (243)
T PRK10866 119 LDDSALQGFFGVDRSDRDPQHARAAFRDF---------------SKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAE 183 (243)
T ss_pred cchhhhhhccCCCccccCHHHHHHHHHHH---------------HHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 011 1122222 233333444444445544444433221111123455
Q ss_pred HHHhcCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 037713 313 GTAQHGQAEETLALYDEMVSA--GVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI 366 (610)
Q Consensus 313 ~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 366 (610)
-|.+.|.+..|..-|+.+.+. +.+........+..+|...|..++|..+...+.
T Consensus 184 ~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 184 YYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 688889999999999998873 233345667778889999999999988776553
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.037 Score=45.27 Aligned_cols=91 Identities=18% Similarity=0.243 Sum_probs=62.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHH
Q 037713 310 IIVGTAQHGQAEETLALYDEMVSAGVKPN--EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP-SLQHYTCLLDLLS 386 (610)
Q Consensus 310 li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~ 386 (610)
+..++-..|+.++|+.+|++....|.... ...+..+.+++...|++++|..+++.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44566778888888888888888876654 34566777888888888888888888876432111 2223333445667
Q ss_pred hcCCHHHHHHHHHh
Q 037713 387 RSGHLDEAENLIKA 400 (610)
Q Consensus 387 ~~g~~~~A~~~~~~ 400 (610)
..|+.++|.+.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 78888888876644
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.64 Score=46.11 Aligned_cols=389 Identities=10% Similarity=0.030 Sum_probs=215.1
Q ss_pred CCCCchHHHHHHHhhcCCChHHHHHHHccCCCCC---cchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHH
Q 037713 35 HQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRD---HVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASL 111 (610)
Q Consensus 35 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~l 111 (610)
+.|...|-.||.-|...|..++.++++++|..|- ..+|..-|++=....++.....+|.+.+... . +...|..-
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~-l--~ldLW~lY 115 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS-L--NLDLWMLY 115 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh-c--cHhHHHHH
Confidence 4577889999999999999999999999999874 4468888888888889999999999988743 3 44455555
Q ss_pred HHHHhccCCcHH------HHHHHHHHHh-cCCCCC-hhHHHHHHHHHH---hCCC------hHHHHHHHHhcCCC-----
Q 037713 112 VKACGSLGATRL------GKQVHACFVL-SPFCDD-DVVKSSLVDMYA---KCGL------PNNARAVFDSIKLK----- 169 (610)
Q Consensus 112 l~~~~~~~~~~~------a~~~~~~~~~-~g~~~~-~~~~~~li~~~~---~~g~------~~~A~~~~~~m~~~----- 169 (610)
+.-..+..+.-. -.+.++..+. .++.|- ...|+..++..- ..|. +|..++.+.++..-
T Consensus 116 l~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nl 195 (660)
T COG5107 116 LEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNL 195 (660)
T ss_pred HHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccH
Confidence 554444332221 1233333333 344443 334555544322 1233 34445555555421
Q ss_pred -----ChhhHHHHHHHHHh-------cCCHHHHHHHHhhCC-------------------------------------CC
Q 037713 170 -----NSVSWTAMLSAYAR-------SGRKKDAMEIFEQAP-------------------------------------VR 200 (610)
Q Consensus 170 -----~~~~~~~li~~~~~-------~g~~~~A~~~~~~~~-------------------------------------~~ 200 (610)
|-..|..=++.... .--+-.|.+.+++.. .+
T Consensus 196 eklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~ 275 (660)
T COG5107 196 EKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENG 275 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCC
Confidence 11111111110000 000111111111110 00
Q ss_pred -----Ch------hhHHHHH--------------HHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccc-cH
Q 037713 201 -----NL------FLWTALV--------------SGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFA-VL 254 (610)
Q Consensus 201 -----~~------~~~~~li--------------~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~-~~ 254 (610)
+. ..++-.+ .-+...++-+.|+...+.-.... |. ....++-|-... +-
T Consensus 276 l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~s---ps---L~~~lse~yel~nd~ 349 (660)
T COG5107 276 LKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMS---PS---LTMFLSEYYELVNDE 349 (660)
T ss_pred cccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCC---Cc---hheeHHHHHhhcccH
Confidence 00 1112111 11344566777776655432221 33 333333333222 22
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHh---cCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 037713 255 ELGKQIHGLVIALGYESCLFISNAIVDMYAK---CSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMV 331 (610)
Q Consensus 255 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~---~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 331 (610)
+.....++...+. ..---+.++.=+. -|+.+...+++-.-..+=..+|...+..-.+..-.+.|..+|-+..
T Consensus 350 e~v~~~fdk~~q~-----L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~r 424 (660)
T COG5107 350 EAVYGCFDKCTQD-----LKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLR 424 (660)
T ss_pred HHHhhhHHHHHHH-----HHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 2222222222110 0000000000000 2334333333322223456778888888888888888899999988
Q ss_pred HcC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCC--
Q 037713 332 SAG-VKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM--PFEPD-- 406 (610)
Q Consensus 332 ~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~-- 406 (610)
+.| +.++...+++.+.-++ .|+...|..+|+.-... ++.+..--+-.+.-+.+.++-+.|..+|+.. .+..+
T Consensus 425 k~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~ 501 (660)
T COG5107 425 KEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQL 501 (660)
T ss_pred ccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhh
Confidence 888 6677888888887554 57788888888877663 2233333345566677888888899888865 23333
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC
Q 037713 407 EPTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440 (610)
Q Consensus 407 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 440 (610)
...|..++..-..-|+...+..+-+++.++-|..
T Consensus 502 k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 502 KRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred hHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 5678888888888899988888888888888864
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.056 Score=44.20 Aligned_cols=107 Identities=8% Similarity=-0.073 Sum_probs=58.3
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCC-HhHHHHHHHHHhccccHHHHHHHHHHHHHhCCC--CchhHHHHHHHHHH
Q 037713 208 LVSGLVQSRNEIDAFYSFIEMRREGVDIVD-PLVLSSIVGACANFAVLELGKQIHGLVIALGYE--SCLFISNAIVDMYA 284 (610)
Q Consensus 208 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~y~ 284 (610)
+..++-..|+.++|+.+|++....|...++ ...+..+.+.+...|++++|..+++........ .+..+...+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 345667778888888888888887754121 234445556666677777777777666554211 01222222333445
Q ss_pred hcCCHHHHHHHHHhcCCCChhHHHHHHHHH
Q 037713 285 KCSDIIAAKDIFGRMRRKDVVSWTSIIVGT 314 (610)
Q Consensus 285 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 314 (610)
..|+.++|.+.+-....++...|.--|..|
T Consensus 87 ~~gr~~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666665555444433333343333333
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.64 Score=45.64 Aligned_cols=87 Identities=11% Similarity=0.085 Sum_probs=53.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHh
Q 037713 312 VGTAQHGQAEETLALYDEMVSA---GVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPS-LQHYTCLLDLLSR 387 (610)
Q Consensus 312 ~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~ 387 (610)
.-..++|++..|.+.|.+.+.. ..+|+...|.....+..+.|+.++|+.--+...+ +.|. +..|..-..++.-
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syikall~ra~c~l~ 333 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYIKALLRRANCHLA 333 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHHHHHHHHHHHHHH
Confidence 3445678888888888777653 3455666677777777778888888777666543 2222 1222222334455
Q ss_pred cCCHHHHHHHHHhC
Q 037713 388 SGHLDEAENLIKAM 401 (610)
Q Consensus 388 ~g~~~~A~~~~~~m 401 (610)
.+++++|.+-+++.
T Consensus 334 le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 334 LEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHHHH
Confidence 66777777777665
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.032 Score=46.13 Aligned_cols=52 Identities=15% Similarity=0.203 Sum_probs=38.9
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHH
Q 037713 334 GVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLL 385 (610)
Q Consensus 334 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 385 (610)
...|+..+..+++.+|+..|++..|.++.+...+.|+++.+...|..|+.-.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3567777788888888888888888888888777777777777777776643
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.012 Score=55.66 Aligned_cols=90 Identities=12% Similarity=0.103 Sum_probs=38.0
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCch
Q 037713 350 SHVGLVGKGRKLFKSMIEDYGITPS-LQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD----EPTWAALLSACKHHRNT 423 (610)
Q Consensus 350 ~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~ 423 (610)
.+.|++++|...|+.+.+.+.-.+- ...+..+...|...|++++|...|+.+ ...|+ ...+..+...+...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 3345555555555555543211110 123344444445555555555544444 11111 22222333334444455
Q ss_pred hHHHHHHHHHhcCCCC
Q 037713 424 EMGTRVANHLLSLKPE 439 (610)
Q Consensus 424 ~~a~~~~~~~~~~~p~ 439 (610)
+.|..+++++++..|+
T Consensus 234 ~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 234 AKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHHHHHHHCcC
Confidence 5555555555444444
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0036 Score=40.91 Aligned_cols=42 Identities=26% Similarity=0.540 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHH
Q 037713 408 PTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSN 449 (610)
Q Consensus 408 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 449 (610)
.+|..+..+|...|++++|+++++++++.+|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 357788889999999999999999999999999888777654
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.052 Score=51.51 Aligned_cols=93 Identities=12% Similarity=0.204 Sum_probs=44.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-HHHHHHH
Q 037713 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE----VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPS-LQHYTCL 381 (610)
Q Consensus 307 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l 381 (610)
|...+..+.+.|++++|+..|+.+.+. .|+. ..+..+..++...|++++|...|+.+.+.+.-.|. ...+-.+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 333333334445555555555555553 2221 23444555555555666666555555553322211 2333334
Q ss_pred HHHHHhcCCHHHHHHHHHhC
Q 037713 382 LDLLSRSGHLDEAENLIKAM 401 (610)
Q Consensus 382 i~~~~~~g~~~~A~~~~~~m 401 (610)
...|...|+.++|..++++.
T Consensus 224 g~~~~~~g~~~~A~~~~~~v 243 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQV 243 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 44455555555555555544
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.02 Score=55.50 Aligned_cols=276 Identities=10% Similarity=0.012 Sum_probs=145.5
Q ss_pred HHHcCCCchHHHHHHHHhHHCCCCCCChh----hHHHHHHHHhccCCcHHHHHHHHHHH--hc--CCC-CChhHHHHHHH
Q 037713 78 AYNQANLPQKTISIFSTMLALDKLQPDHF----VFASLVKACGSLGATRLGKQVHACFV--LS--PFC-DDDVVKSSLVD 148 (610)
Q Consensus 78 ~~~~~g~~~~A~~~~~~m~~~~~~~pd~~----~~~~ll~~~~~~~~~~~a~~~~~~~~--~~--g~~-~~~~~~~~li~ 148 (610)
-+++.|+....+.+|+..++.| .-|.. .|..|.++|.-.+++++|.+.|..=+ .. |-. -.......|-+
T Consensus 26 RLck~gdcraGv~ff~aA~qvG--TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVG--TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhc--chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 3688899999999999888876 33433 35556677777778888888765321 10 100 01112222334
Q ss_pred HHHhCCChHHHHHHHHhcC-------CC--ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCC-ChhhHHHHHHHHHhCCCh
Q 037713 149 MYAKCGLPNNARAVFDSIK-------LK--NSVSWTAMLSAYARSGRKKDAMEIFEQAPVR-NLFLWTALVSGLVQSRNE 218 (610)
Q Consensus 149 ~~~~~g~~~~A~~~~~~m~-------~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~ 218 (610)
.+--.|.+++|...-.+-. .+ ....+..+...|...|+--. .+.| +.-.++.=+. ..+
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g-------~~~pee~g~f~~ev~-----~al 171 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTG-------LEAPEEKGAFNAEVT-----SAL 171 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccC-------CCChhhcccccHHHH-----HHH
Confidence 4444566666654322111 00 11122222333322221000 0000 0000000000 011
Q ss_pred HHHHHHHHHH----HHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHh----CCC-CchhHHHHHHHHHHhcCCH
Q 037713 219 IDAFYSFIEM----RREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIAL----GYE-SCLFISNAIVDMYAKCSDI 289 (610)
Q Consensus 219 ~~A~~~~~~m----~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~y~~~g~~ 289 (610)
+.|.++|.+= .+.|-.......|..+-..|.-.|+++.+...|+.-... |-. .....+..|.+++.-.|++
T Consensus 172 ~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~f 251 (639)
T KOG1130|consen 172 ENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNF 251 (639)
T ss_pred HHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhccc
Confidence 2333333321 111211122344555556666678888888887765432 321 2234667788888888888
Q ss_pred HHHHHHHHhcC-------CC--ChhHHHHHHHHHHhcCChHHHHHHHHHHHH----cC-CCCCHHHHHHHHHHHhccCCH
Q 037713 290 IAAKDIFGRMR-------RK--DVVSWTSIIVGTAQHGQAEETLALYDEMVS----AG-VKPNEVTFVGLIYACSHVGLV 355 (610)
Q Consensus 290 ~~A~~~~~~~~-------~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g-~~p~~~t~~~ll~a~~~~g~~ 355 (610)
+.|.+.|+... .+ ...+..+|...|.-..++++|+.++.+-.. .+ ..-....+-+|..++...|..
T Consensus 252 e~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h 331 (639)
T KOG1130|consen 252 ELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEH 331 (639)
T ss_pred HhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhH
Confidence 88888877543 22 234566677777777788888887765322 11 122456677888888888888
Q ss_pred HHHHHHHHHhHH
Q 037713 356 GKGRKLFKSMIE 367 (610)
Q Consensus 356 ~~a~~~~~~~~~ 367 (610)
++|..+.+...+
T Consensus 332 ~kAl~fae~hl~ 343 (639)
T KOG1130|consen 332 RKALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHHHH
Confidence 888877655443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.34 Score=44.51 Aligned_cols=133 Identities=9% Similarity=0.004 Sum_probs=72.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHH-----H
Q 037713 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYT-----C 380 (610)
Q Consensus 306 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----~ 380 (610)
.-+.++..+.-+|.+.-.+.++.+.++...+.+......|.+.-.+.|+.+.|..+|+...+.. -..|....+ .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~-~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVT-QKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH-hhhhccchhHHHHhh
Confidence 3455566666666777777777777776555566666667777777777777777777655431 122222222 2
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCC
Q 037713 381 LLDLLSRSGHLDEAENLIKAMPF-EP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439 (610)
Q Consensus 381 li~~~~~~g~~~~A~~~~~~m~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 439 (610)
....|.-+.++.+|...+.+.+. .| |+...|.-.-...-.|+...|.+..+.+.+..|.
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 22334445556666666655521 11 2222232222233345566666666666666654
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.013 Score=58.45 Aligned_cols=97 Identities=8% Similarity=0.003 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHH
Q 037713 374 SLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPDE----PTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLS 448 (610)
Q Consensus 374 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 448 (610)
+...++.+..+|.+.|++++|...|++. .+.|+. .+|..+..+|...|+.++|+..+++++++.+. .|..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i~ 150 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTIL 150 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHHH
Confidence 4567777777788888888888887775 566663 34777777788888888888888887776321 221111
Q ss_pred H--HhhhhcchhHHHHHHHHHhhCCCc
Q 037713 449 N--VYASAAMWQHVSKVRKLMSVMEVK 473 (610)
Q Consensus 449 ~--~~~~~g~~~~a~~~~~~m~~~~~~ 473 (610)
. .+......++..++++..++-|..
T Consensus 151 ~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 151 NDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred hCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 1 112223344566666666665553
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.25 E-value=1.4 Score=43.78 Aligned_cols=405 Identities=10% Similarity=0.052 Sum_probs=221.6
Q ss_pred HHHHccCCC-C-CcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcC
Q 037713 58 HHLLEEMPQ-R-DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSP 135 (610)
Q Consensus 58 ~~~f~~m~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 135 (610)
+++=+++.+ | |..+|-.||.-|...+..++..+++++|..- .+-=...|..-+++=....++...+.+|.+.++..
T Consensus 29 lrLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p--fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~ 106 (660)
T COG5107 29 LRLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP--FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS 106 (660)
T ss_pred HHHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC--CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh
Confidence 366666663 3 8889999999999999999999999999652 22234556666666666688999999999998876
Q ss_pred CCCChhHHHHHHHHHHhCCC---------hHHHHHHHHhc--CC-CChhhHHHHHHHH---------HhcCCHHHHHHHH
Q 037713 136 FCDDDVVKSSLVDMYAKCGL---------PNNARAVFDSI--KL-KNSVSWTAMLSAY---------ARSGRKKDAMEIF 194 (610)
Q Consensus 136 ~~~~~~~~~~li~~~~~~g~---------~~~A~~~~~~m--~~-~~~~~~~~li~~~---------~~~g~~~~A~~~~ 194 (610)
+. ...|...++---+... +-+|-++.-.. .+ .....|+..+.-+ -++.+++..++.+
T Consensus 107 l~--ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y 184 (660)
T COG5107 107 LN--LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGY 184 (660)
T ss_pred cc--HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 54 4555555543333221 12222221111 12 2445566554432 2344555666666
Q ss_pred hhCCCC---Ch-hhHH------HHHHH-----HHh--CCChHHHHHHHHHHHH--cCCC---CCCHhHHHHHHH------
Q 037713 195 EQAPVR---NL-FLWT------ALVSG-----LVQ--SRNEIDAFYSFIEMRR--EGVD---IVDPLVLSSIVG------ 246 (610)
Q Consensus 195 ~~~~~~---~~-~~~~------~li~~-----~~~--~g~~~~A~~~~~~m~~--~~~~---~p~~~t~~~ll~------ 246 (610)
.++... |. ..|+ .=+.. ++. .--+..|...+++... .|.. |.+..|++-+..
T Consensus 185 ~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~W 264 (660)
T COG5107 185 MRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNW 264 (660)
T ss_pred HHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchh
Confidence 665532 11 1121 11111 111 1124456666666543 2332 123333333221
Q ss_pred -----HHhcc------cc-HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCh--------
Q 037713 247 -----ACANF------AV-LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR--KDV-------- 304 (610)
Q Consensus 247 -----~~~~~------~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~-------- 304 (610)
--... +- .....-+|+++... +.-...+|----..+...++-+.|++....-.+ |..
T Consensus 265 lNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~lse~y 343 (660)
T COG5107 265 LNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFLSEYY 343 (660)
T ss_pred hhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchheeHHHHH
Confidence 10000 00 11122233333332 122233443333444556677777776655432 210
Q ss_pred -------h---HHHHHHHHHHh---cCChHHHHHH------HHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 037713 305 -------V---SWTSIIVGTAQ---HGQAEETLAL------YDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365 (610)
Q Consensus 305 -------~---~~~~li~~~~~---~g~~~~A~~l------~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 365 (610)
. +|..++..+.+ .|+.+.+... ..+..-....--...|...+++-.+..-++.|+.+|-+.
T Consensus 344 el~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~ 423 (660)
T COG5107 344 ELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKL 423 (660)
T ss_pred hhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 1 12222222221 1111111111 111110001112356778888888888999999999999
Q ss_pred HHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHH-HHHHHHHHHhcCchhHHHHHHHHHhcCCCC--C
Q 037713 366 IEDYG-ITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPDEPT-WAALLSACKHHRNTEMGTRVANHLLSLKPE--D 440 (610)
Q Consensus 366 ~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~ 440 (610)
.+. + +.+++.++++++.-++ .|+..-|..+|+-- .--||... -+..+.-+..-++-+.|..+|+..++.-.. -
T Consensus 424 rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~ 501 (660)
T COG5107 424 RKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQL 501 (660)
T ss_pred hcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhh
Confidence 886 6 7788999999998775 68888899999764 33455444 345666677788889999999866532211 1
Q ss_pred CcchHhHHHHhhhhcchhHHHHHHHHHhh
Q 037713 441 PSSYILLSNVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 441 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 469 (610)
...|..++.--..-|+...+..+-+.|.+
T Consensus 502 k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 502 KRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred hHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 35677777776777777766666555543
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.013 Score=43.19 Aligned_cols=62 Identities=18% Similarity=0.314 Sum_probs=47.8
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcch
Q 037713 383 DLLSRSGHLDEAENLIKAM-PFEPD-EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSY 444 (610)
Q Consensus 383 ~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 444 (610)
..|.+.+++++|.++++.+ ...|+ ...|......+...|++++|.+.++++++..|+++...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 4677888888888888887 45554 55566677778888999999999999998888765443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.49 Score=48.98 Aligned_cols=206 Identities=15% Similarity=0.194 Sum_probs=123.3
Q ss_pred HHHHHHHHhCCC--hHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 037713 206 TALVSGLVQSRN--EIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMY 283 (610)
Q Consensus 206 ~~li~~~~~~g~--~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 283 (610)
+..-.+|.+..+ +-+-+.-+++|++.|-. |+.... ...|+-.|.+.+|.++|.+ .|.+ |.-+++|
T Consensus 602 ~~ARkAY~rVRdl~~L~li~EL~~~k~rge~-P~~iLl---A~~~Ay~gKF~EAAklFk~---~G~e------nRAlEmy 668 (1081)
T KOG1538|consen 602 ETARKAYIRVRDLRYLELISELEERKKRGET-PNDLLL---ADVFAYQGKFHEAAKLFKR---SGHE------NRALEMY 668 (1081)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhcCCC-chHHHH---HHHHHhhhhHHHHHHHHHH---cCch------hhHHHHH
Confidence 333344544333 44556667788888876 776543 4556677888888777753 2322 3345556
Q ss_pred HhcCCHHHHHHHHHhcCC---------C-----ChhHHHHHHHHHHhcCChHHHHHHHHH------HHHcCCC---CCHH
Q 037713 284 AKCSDIIAAKDIFGRMRR---------K-----DVVSWTSIIVGTAQHGQAEETLALYDE------MVSAGVK---PNEV 340 (610)
Q Consensus 284 ~~~g~~~~A~~~~~~~~~---------~-----~~~~~~~li~~~~~~g~~~~A~~l~~~------m~~~g~~---p~~~ 340 (610)
.....++.|.++...-.. + |+.-=.+....+...|+.++|..+.-+ +.+-+-+ .+..
T Consensus 669 TDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere 748 (1081)
T KOG1538|consen 669 TDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAERE 748 (1081)
T ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhh
Confidence 555556666555543321 0 111011223334455666666554321 1221212 2445
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHH----------
Q 037713 341 TFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMP-FEPDEPT---------- 409 (610)
Q Consensus 341 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~---------- 409 (610)
+...+..-+-+...+..|-++|.+|-. ..+++++....+++.+|..+-++.| ..||...
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~D 818 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAEND 818 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhh
Confidence 565566666677788889999988843 2468889999999999999999883 4454322
Q ss_pred -HHHHHHHHHhcCchhHHHHHHHHHh
Q 037713 410 -WAALLSACKHHRNTEMGTRVANHLL 434 (610)
Q Consensus 410 -~~~ll~~~~~~g~~~~a~~~~~~~~ 434 (610)
|.---.+|.+.|+-.+|.++++++.
T Consensus 819 rFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 819 RFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 2233456888899999999988875
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.085 Score=43.60 Aligned_cols=49 Identities=16% Similarity=0.289 Sum_probs=31.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHH
Q 037713 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAM----PFEPDEPTWAALLSACK 418 (610)
Q Consensus 370 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~ 418 (610)
...|+..+..+++.+|+..|++..|.++++.. +++-+..+|..|+.-+.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 44566667777777777777777777666555 45545666766666543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.3 Score=46.09 Aligned_cols=103 Identities=15% Similarity=0.108 Sum_probs=73.7
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHhC-CCCCCHHH-HH
Q 037713 337 PNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRS---GHLDEAENLIKAM-PFEPDEPT-WA 411 (610)
Q Consensus 337 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m-~~~p~~~~-~~ 411 (610)
-|...|..|..+|...|+.+.|...|....+- -.++...+..+..++... ....++.++|+++ ...|+... ..
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 36778888888888888888888888888663 334556666666655432 2355778888888 55665444 44
Q ss_pred HHHHHHHhcCchhHHHHHHHHHhcCCCCCC
Q 037713 412 ALLSACKHHRNTEMGTRVANHLLSLKPEDP 441 (610)
Q Consensus 412 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 441 (610)
-|..++...|++.+|...++.|++..|.+.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 445558889999999999999998887663
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.26 Score=45.00 Aligned_cols=85 Identities=19% Similarity=0.151 Sum_probs=49.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCH-HHHHHHHHHH
Q 037713 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSL-QHYTCLLDLL 385 (610)
Q Consensus 307 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~ 385 (610)
+..++.-|-......+|...+..+.+. .-.. -..+..-|.+.|.+..|..-++.+++.+.-.+.. .....|+.+|
T Consensus 113 ~~~li~~yP~S~y~~~A~~~l~~l~~~---la~~-e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y 188 (203)
T PF13525_consen 113 FEELIKRYPNSEYAEEAKKRLAELRNR---LAEH-ELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAY 188 (203)
T ss_dssp HHHHHHH-TTSTTHHHHHHHHHHHHHH---HHHH-HHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCchHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHH
Confidence 334455555555556666555555432 0111 1235667888888888888888888865433332 5567777888
Q ss_pred HhcCCHHHHH
Q 037713 386 SRSGHLDEAE 395 (610)
Q Consensus 386 ~~~g~~~~A~ 395 (610)
.+.|..+.|.
T Consensus 189 ~~l~~~~~a~ 198 (203)
T PF13525_consen 189 YKLGLKQAAD 198 (203)
T ss_dssp HHTT-HHHHH
T ss_pred HHhCChHHHH
Confidence 8888877543
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.94 E-value=1.3 Score=40.43 Aligned_cols=80 Identities=15% Similarity=0.132 Sum_probs=45.6
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHH
Q 037713 344 GLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD----EPTWAALLSACK 418 (610)
Q Consensus 344 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~ 418 (610)
.++.-|-.+.-..+|...+..+.+.. ...--.+.+.|.+.|.+..|..-++.+ ..-|+ ......++.++.
T Consensus 115 ~li~~yP~S~y~~~A~~~l~~l~~~l-----a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~ 189 (203)
T PF13525_consen 115 ELIKRYPNSEYAEEAKKRLAELRNRL-----AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYY 189 (203)
T ss_dssp HHHHH-TTSTTHHHHHHHHHHHHHHH-----HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHCcCchHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHH
Confidence 34444444555666666655554421 223334677788888888888777766 11233 334566777788
Q ss_pred hcCchhHHHH
Q 037713 419 HHRNTEMGTR 428 (610)
Q Consensus 419 ~~g~~~~a~~ 428 (610)
+.|..+.+..
T Consensus 190 ~l~~~~~a~~ 199 (203)
T PF13525_consen 190 KLGLKQAADT 199 (203)
T ss_dssp HTT-HHHHHH
T ss_pred HhCChHHHHH
Confidence 8887775443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.86 E-value=1.4 Score=49.18 Aligned_cols=158 Identities=16% Similarity=0.188 Sum_probs=92.8
Q ss_pred cCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHH
Q 037713 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGL 263 (610)
Q Consensus 184 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 263 (610)
.+++++|+.-+.++. ...|.-.+..--+.|.+++|+.++. |+...+..+..+|+..
T Consensus 893 L~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly~---------~~~e~~k~i~~~ya~h------------ 948 (1265)
T KOG1920|consen 893 LKRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALYK---------PDSEKQKVIYEAYADH------------ 948 (1265)
T ss_pred HHHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhheec---------cCHHHHHHHHHHHHHH------------
Confidence 355666665555543 2234444455555666677766653 7777777666665431
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH--
Q 037713 264 VIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT-- 341 (610)
Q Consensus 264 ~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-- 341 (610)
+.+. ..++--.-+|.++|+.++|.+.| ...|+|.+|+.+..+|... -|...
T Consensus 949 L~~~------~~~~~Aal~Ye~~GklekAl~a~------------------~~~~dWr~~l~~a~ql~~~---~de~~~~ 1001 (1265)
T KOG1920|consen 949 LREE------LMSDEAALMYERCGKLEKALKAY------------------KECGDWREALSLAAQLSEG---KDELVIL 1001 (1265)
T ss_pred HHHh------ccccHHHHHHHHhccHHHHHHHH------------------HHhccHHHHHHHHHhhcCC---HHHHHHH
Confidence 1111 11223345677888888885544 4478888888888777432 12221
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037713 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401 (610)
Q Consensus 342 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 401 (610)
--.|..-+...++.-+|-++..+...+ | .--+..|++...+++|..+....
T Consensus 1002 a~~L~s~L~e~~kh~eAa~il~e~~sd----~-----~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1002 AEELVSRLVEQRKHYEAAKILLEYLSD----P-----EEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHHHcccchhHHHHHHHHhcC----H-----HHHHHHHhhHhHHHHHHHHHHhc
Confidence 235666777778887777776665331 2 23455667777788887776655
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.85 E-value=3 Score=43.95 Aligned_cols=138 Identities=12% Similarity=0.128 Sum_probs=72.8
Q ss_pred CChHHHHHHHccCCCCCcchHHHHHHHHHcCCCchHHHHHH----------------HHhHHCCCCCCChhhHHHHHHHH
Q 037713 52 DLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIF----------------STMLALDKLQPDHFVFASLVKAC 115 (610)
Q Consensus 52 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~----------------~~m~~~~~~~pd~~~~~~ll~~~ 115 (610)
|++++|.+++-.|.++|.. |..+.+-|++-...+++ +.|-+ .-.+...|......|
T Consensus 748 g~feeaek~yld~drrDLA-----ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~---~fa~~~~We~A~~yY 819 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGE---TFAEMMEWEEAAKYY 819 (1189)
T ss_pred cchhHhhhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 7788888888888877653 22233333333333332 22211 111223344444444
Q ss_pred hccCCcHHHHHH------HHHHH--hcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCH
Q 037713 116 GSLGATRLGKQV------HACFV--LSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRK 187 (610)
Q Consensus 116 ~~~~~~~~a~~~------~~~~~--~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~ 187 (610)
...|+.+.-.+. |+.+. ...++.|....-.+.+++...|.-++|.+.|-+...|. +.+..|...++|
T Consensus 820 ~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW 894 (1189)
T KOG2041|consen 820 SYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQW 894 (1189)
T ss_pred HhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHH
Confidence 444444322221 11111 12346666677777778888888887777776655443 233455566677
Q ss_pred HHHHHHHhhCCCCCh
Q 037713 188 KDAMEIFEQAPVRNL 202 (610)
Q Consensus 188 ~~A~~~~~~~~~~~~ 202 (610)
.+|.++-.+..-|.+
T Consensus 895 ~~avelaq~~~l~qv 909 (1189)
T KOG2041|consen 895 GEAVELAQRFQLPQV 909 (1189)
T ss_pred HHHHHHHHhccchhH
Confidence 777777666554433
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.28 Score=39.94 Aligned_cols=139 Identities=12% Similarity=0.109 Sum_probs=84.4
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037713 316 QHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAE 395 (610)
Q Consensus 316 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 395 (610)
-.|..++..++..+...+ .+..-+|.++--...+-+-+-..+.++.+-+-+.+ ..+|++....
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDi--------------s~C~NlKrVi 76 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDI--------------SKCGNLKRVI 76 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-G--------------GG-S-THHHH
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------hhhcchHHHH
Confidence 356677777777776654 24455555555444444555555555555332211 2355555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhCCCc
Q 037713 396 NLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVK 473 (610)
Q Consensus 396 ~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 473 (610)
.-+-.++ .+......-+.+...+|.-+.-.+++..+.+.+..+|....-++.+|.+.|+..++.+++...-++|++
T Consensus 77 ~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 77 ECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 5555543 245556677888899999999999999988666567889999999999999999999999999888875
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.015 Score=43.70 Aligned_cols=24 Identities=8% Similarity=-0.103 Sum_probs=10.8
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHH
Q 037713 410 WAALLSACKHHRNTEMGTRVANHL 433 (610)
Q Consensus 410 ~~~ll~~~~~~g~~~~a~~~~~~~ 433 (610)
+..+...+...|++++|++.+++.
T Consensus 49 ~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 49 LNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444444444444444444443
|
... |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.1 Score=48.21 Aligned_cols=100 Identities=15% Similarity=0.171 Sum_probs=81.4
Q ss_pred HHHHHHHhcC--CCChhHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC---------
Q 037713 291 AAKDIFGRMR--RKDVVSWTSIIVGTAQH-----GQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGL--------- 354 (610)
Q Consensus 291 ~A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~--------- 354 (610)
..++.|.... ++|-.+|-+++..+..+ +..+=....++.|.+.|+.-|..+|+.||+.+-+..-
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3456677776 67888999999888764 5567777788999999999999999999998776542
Q ss_pred -------HHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 037713 355 -------VGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHL 391 (610)
Q Consensus 355 -------~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 391 (610)
-+-++.++++|.. +|+.||.++-..|++++++.+..
T Consensus 132 F~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HhhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhcccccc
Confidence 2347889999966 69999999999999999998864
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.15 Score=49.88 Aligned_cols=63 Identities=8% Similarity=0.037 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhh
Q 037713 407 EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 407 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 469 (610)
..+++.|...|.+.+.+..|++...+.++++|+|..+...-+.+|...|.++.|...|+++.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 345677777888999999999999999999999999999999999999999999999998864
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.45 E-value=1.9 Score=42.78 Aligned_cols=68 Identities=19% Similarity=0.155 Sum_probs=39.6
Q ss_pred HhhcCCChHHHHHHHccCCCC---Ccc----hHHHHHHHHHc---CCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHH
Q 037713 47 AYGKCDLVQYAHHLLEEMPQR---DHV----SWASILTAYNQ---ANLPQKTISIFSTMLALDKLQPDHFVFASLVKAC 115 (610)
Q Consensus 47 ~~~~~g~~~~A~~~f~~m~~~---~~~----~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~ 115 (610)
.|-...+++...++.+.++.. +.. .--...-++.+ .|+.++|++++..+.... ..++..+|..+.+.+
T Consensus 150 SyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~-~~~~~d~~gL~GRIy 227 (374)
T PF13281_consen 150 SYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESD-ENPDPDTLGLLGRIY 227 (374)
T ss_pred HhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhcc-CCCChHHHHHHHHHH
Confidence 466677777777777777643 111 11122234445 677777777777754444 456666666665554
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.44 E-value=2.9 Score=40.97 Aligned_cols=277 Identities=14% Similarity=0.074 Sum_probs=147.0
Q ss_pred ccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHH--HHhCCChHHHHHHHHhcCCCChh---hHHHHHHHHHhcCCHHHHH
Q 037713 117 SLGATRLGKQVHACFVLSPFCDDDVVKSSLVDM--YAKCGLPNNARAVFDSIKLKNSV---SWTAMLSAYARSGRKKDAM 191 (610)
Q Consensus 117 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~---~~~~li~~~~~~g~~~~A~ 191 (610)
..|+-..|+++-.+..+. +..|....--|+.+ -.-.|+.+.|.+-|+.|...-.. -...|.-.--+.|..+.|.
T Consensus 96 gAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr 174 (531)
T COG3898 96 GAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAAR 174 (531)
T ss_pred ccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHH
Confidence 446666776665554322 23333333333332 23468888888888888643211 1222222234567777777
Q ss_pred HHHhhCCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhH--HHHHHHHHhc---cccHHHHHHHHHH
Q 037713 192 EIFEQAPVR---NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLV--LSSIVGACAN---FAVLELGKQIHGL 263 (610)
Q Consensus 192 ~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t--~~~ll~~~~~---~~~~~~a~~~~~~ 263 (610)
..-++.-.. -.-.|.+.+...+..|+|+.|+++++.-+...+..++..- -..++.+-+. ..+...++..-.+
T Consensus 175 ~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~ 254 (531)
T COG3898 175 HYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALE 254 (531)
T ss_pred HHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 666654322 2356778888999999999999999887765433244432 2233332221 1234445554444
Q ss_pred HHHhCCCCchhH-HHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCC-HH
Q 037713 264 VIALGYESCLFI-SNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVS-AGVKPN-EV 340 (610)
Q Consensus 264 ~~~~~~~~~~~~-~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~-~~ 340 (610)
..+. .|+..- .-.-..+|.+.|++.++-.+++.+-+..+..--..+..+++.|+ .++.-+++... ..++|| ..
T Consensus 255 a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gd--ta~dRlkRa~~L~slk~nnae 330 (531)
T COG3898 255 ANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGD--TALDRLKRAKKLESLKPNNAE 330 (531)
T ss_pred Hhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCC--cHHHHHHHHHHHHhcCccchH
Confidence 4443 333221 11223566777777777777777754322222222223344444 33333333322 123444 44
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHhC
Q 037713 341 TFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRS-GHLDEAENLIKAM 401 (610)
Q Consensus 341 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m 401 (610)
+...+..+-...|++..|..--+... ...|....|..|.+.-... |+-.++...+-+.
T Consensus 331 s~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 331 SSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 55556666666777766665554443 3466666676666654433 6666666666555
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.048 Score=46.85 Aligned_cols=60 Identities=22% Similarity=0.225 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHh
Q 037713 409 TWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMS 468 (610)
Q Consensus 409 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 468 (610)
....++..+...|+++.|...+++++..+|-+...|..++.+|...|+..+|.++++.+.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 455666778889999999999999999999999999999999999999999999998875
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.11 Score=52.10 Aligned_cols=61 Identities=15% Similarity=0.115 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037713 338 NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSL----QHYTCLLDLLSRSGHLDEAENLIKAM 401 (610)
Q Consensus 338 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m 401 (610)
+...++.+..+|.+.|++++|...|+...+ +.|+. ..|..+..+|...|++++|.+.+++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 567888999999999999999999999876 45663 35888999999999999999999887
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.023 Score=42.57 Aligned_cols=61 Identities=7% Similarity=0.067 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHhcC----CCC---CCcchHhHHHHhhhhcchhHHHHHHHHHh
Q 037713 408 PTWAALLSACKHHRNTEMGTRVANHLLSL----KPE---DPSSYILLSNVYASAAMWQHVSKVRKLMS 468 (610)
Q Consensus 408 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 468 (610)
.+++.+...|...|++++|+..+++++++ +++ -..++..++.+|...|++++|.+.++...
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45667777788888888888888877743 222 24578899999999999999999988754
|
... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.15 E-value=1.6 Score=45.37 Aligned_cols=185 Identities=14% Similarity=0.057 Sum_probs=96.0
Q ss_pred HHHHHHHHHcCCC--chHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 037713 72 WASILTAYNQANL--PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDM 149 (610)
Q Consensus 72 ~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 149 (610)
++..=.+|.+-.+ +-+-+.-+++|+++| ..|+..... ..|+-.|.+.+|-++|.+ .|. -|..+.+
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rg-e~P~~iLlA---~~~Ay~gKF~EAAklFk~---~G~------enRAlEm 667 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRG-ETPNDLLLA---DVFAYQGKFHEAAKLFKR---SGH------ENRALEM 667 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcC-CCchHHHHH---HHHHhhhhHHHHHHHHHH---cCc------hhhHHHH
Confidence 3344445544333 233444466777777 668765433 345566778888777753 342 1345566
Q ss_pred HHhCCChHHHHHHHHhcCCC--------------ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhC
Q 037713 150 YAKCGLPNNARAVFDSIKLK--------------NSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQS 215 (610)
Q Consensus 150 ~~~~g~~~~A~~~~~~m~~~--------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 215 (610)
|.....+|.|.+++..-... |+.--.+....+...|+.++|..+. ..+
T Consensus 668 yTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~------------------~d~ 729 (1081)
T KOG1538|consen 668 YTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEIC------------------GDH 729 (1081)
T ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhh------------------hcc
Confidence 66666666666665432210 0000011111222223333322221 122
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 037713 216 RNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDI 295 (610)
Q Consensus 216 g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 295 (610)
|-.+-+.++-+++-. .+..+...+..-+-+...+..|.++|..+-.. .+++++....+++++|..+
T Consensus 730 gW~d~lidI~rkld~-----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFal 795 (1081)
T KOG1538|consen 730 GWVDMLIDIARKLDK-----AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFAL 795 (1081)
T ss_pred cHHHHHHHHHhhcch-----hhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhh
Confidence 222222222222211 34455555555566666777777777766433 3577788888888888888
Q ss_pred HHhcCC
Q 037713 296 FGRMRR 301 (610)
Q Consensus 296 ~~~~~~ 301 (610)
-++.++
T Consensus 796 Ae~hPe 801 (1081)
T KOG1538|consen 796 AEKHPE 801 (1081)
T ss_pred hhhCcc
Confidence 888875
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.12 E-value=2.6 Score=38.56 Aligned_cols=193 Identities=15% Similarity=0.125 Sum_probs=96.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH-
Q 037713 274 FISNAIVDMYAKCSDIIAAKDIFGRMR-----RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIY- 347 (610)
Q Consensus 274 ~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~- 347 (610)
.........+...+++..+...+.... ......+..+...+...++...+.+.+.........+. ........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHH
Confidence 344444455555555555555554432 12334444444555555555566666665554332221 11111112
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCc
Q 037713 348 ACSHVGLVGKGRKLFKSMIEDYGI--TPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD--EPTWAALLSACKHHRN 422 (610)
Q Consensus 348 a~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~--~~~~~~ll~~~~~~g~ 422 (610)
++...|+++.+...+...... .- ......+......+...++.++|...+.+. ...|+ ...+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 455666666666666655331 11 112233333333355566666666666555 22232 4555555555666666
Q ss_pred hhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHh
Q 037713 423 TEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMS 468 (610)
Q Consensus 423 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 468 (610)
.+.+...+.......|.....+..+...+...|.++++...+....
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666666666666666533444455555555555666665555443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.38 Score=47.25 Aligned_cols=137 Identities=12% Similarity=-0.012 Sum_probs=95.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCC
Q 037713 311 IVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGH 390 (610)
Q Consensus 311 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 390 (610)
...|.+.|++..|...|++.... |. +...-+.++..... . .-..++..|.-.|.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~~-~--------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKAE-A--------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHHH-H--------HHHHHhhHHHHHHHhhhh
Confidence 45677777888887777776542 00 01111112222111 1 123467778888999999
Q ss_pred HHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHH-HHHHHHH
Q 037713 391 LDEAENLIKAM-PF-EPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHV-SKVRKLM 467 (610)
Q Consensus 391 ~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m 467 (610)
+.+|++.-++. .. .+|.....-=..+|...|+++.|+..|+++++++|+|-.+-..|+.+-.+...+++. .+++..|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888776 33 346666767778899999999999999999999999988888888887777666654 6777777
Q ss_pred hh
Q 037713 468 SV 469 (610)
Q Consensus 468 ~~ 469 (610)
-.
T Consensus 353 F~ 354 (397)
T KOG0543|consen 353 FA 354 (397)
T ss_pred hh
Confidence 54
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.02 E-value=5.2 Score=41.59 Aligned_cols=179 Identities=13% Similarity=0.106 Sum_probs=123.5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHH
Q 037713 272 CLFISNAIVDMYAKCSDIIAAKDIFGRMRRKD---VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVK--PNEVTFVGLI 346 (610)
Q Consensus 272 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p~~~t~~~ll 346 (610)
+..+|...++.-.+.|+.+...-+|++..-|- ...|--.+.-....|+.+-|..++..-.+--++ |....+.+.+
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 45678888888889999999999999887652 234555555455558888888777766553333 3333333333
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHH---HHHHhC-CCCCCHHHHHHHHHH-----
Q 037713 347 YACSHVGLVGKGRKLFKSMIEDYGITPSL-QHYTCLLDLLSRSGHLDEAE---NLIKAM-PFEPDEPTWAALLSA----- 416 (610)
Q Consensus 347 ~a~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~---~~~~~m-~~~p~~~~~~~ll~~----- 416 (610)
+-..|+++.|..+++.+.++ . |+. ..-..-+....+.|..+.+. +++... +.+-+..+...+.--
T Consensus 376 --~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 376 --EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLR 450 (577)
T ss_pred --HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHH
Confidence 44578999999999999885 3 543 44444566777899999888 555544 222233233222222
Q ss_pred HHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhc
Q 037713 417 CKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAA 455 (610)
Q Consensus 417 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 455 (610)
+...++.+.|..++.++.+..|++...|..+++.....+
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 455788999999999999999999888988888876665
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.17 Score=46.81 Aligned_cols=102 Identities=13% Similarity=0.188 Sum_probs=81.8
Q ss_pred hHHHHHHHccCC--CCCcchHHHHHHHHHcC-----CCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccC-------
Q 037713 54 VQYAHHLLEEMP--QRDHVSWASILTAYNQA-----NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLG------- 119 (610)
Q Consensus 54 ~~~A~~~f~~m~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~------- 119 (610)
+-..++.|+..+ ++|-.+|-+++..|... +..+=....++.|.+.| +.-|..+|..||+.+-+-.
T Consensus 50 Lv~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyG-VerDl~vYk~LlnvfPKgkfiP~nvf 128 (406)
T KOG3941|consen 50 LVHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYG-VERDLDVYKGLLNVFPKGKFIPQNVF 128 (406)
T ss_pred ccchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhc-chhhHHHHHHHHHhCcccccccHHHH
Confidence 344667788777 77899999999888654 45566667788999999 9999999999999875532
Q ss_pred ---------CcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCh
Q 037713 120 ---------ATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLP 156 (610)
Q Consensus 120 ---------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 156 (610)
+-+-+..++++|...|+.||-.+-..|++++.+.+-.
T Consensus 129 Q~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 129 QKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 2345788999999999999999999999999887764
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.15 Score=43.64 Aligned_cols=71 Identities=18% Similarity=0.278 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH----hcCCCCCHHH
Q 037713 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE----DYGITPSLQH 377 (610)
Q Consensus 306 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~ 377 (610)
....++..+...|++++|+.+.+.+.... +-|...|..++.++...|+..+|.+.|+.+.+ ..|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 44445555556666666666666666542 22555666666666666666666666655432 2455555544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.69 E-value=3.4 Score=37.77 Aligned_cols=200 Identities=14% Similarity=0.095 Sum_probs=130.5
Q ss_pred HhHHHHHHHHHhccccHHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-hhHHHHHHH-
Q 037713 238 PLVLSSIVGACANFAVLELGKQIHGLVIAL-GYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR--KD-VVSWTSIIV- 312 (610)
Q Consensus 238 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~- 312 (610)
..........+...+.+..+...+...... ........+..+...+...+++..+...+..... ++ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 344455555555555555555555555442 2233444555556666666677777777776654 22 122333333
Q ss_pred HHHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcC
Q 037713 313 GTAQHGQAEETLALYDEMVSAGV--KPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP-SLQHYTCLLDLLSRSG 389 (610)
Q Consensus 313 ~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g 389 (610)
.+...|+.+.|...|.+...... ......+......+...++.+.+...+....+. ... ....+..+...+...+
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHcc
Confidence 67888899999999888855221 123344444455567788999999999888763 333 4677888888888999
Q ss_pred CHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCC
Q 037713 390 HLDEAENLIKAM-PFEPD-EPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439 (610)
Q Consensus 390 ~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 439 (610)
.+++|...+... ...|+ ...+..+...+...+..+.+...+.+.....|.
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 999999988887 44454 445555555555777899999999999988886
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.59 E-value=2.5 Score=35.78 Aligned_cols=83 Identities=12% Similarity=0.179 Sum_probs=39.0
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHH
Q 037713 110 SLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189 (610)
Q Consensus 110 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~ 189 (610)
.++..+...+........++.+++.+ +.+...+|.++..|++.. .++....++. ..+.......+..+.+.+.+++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~ 87 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYEE 87 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHHH
Confidence 44444444455555556666555554 345556666666666542 2223333331 1222333334444444444444
Q ss_pred HHHHHhh
Q 037713 190 AMEIFEQ 196 (610)
Q Consensus 190 A~~~~~~ 196 (610)
+.-++.+
T Consensus 88 ~~~l~~k 94 (140)
T smart00299 88 AVELYKK 94 (140)
T ss_pred HHHHHHh
Confidence 4444444
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.42 Score=44.48 Aligned_cols=89 Identities=17% Similarity=0.258 Sum_probs=37.4
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCchh
Q 037713 351 HVGLVGKGRKLFKSMIEDYGITP-SLQHYTCLLDLLSRSGHLDEAENLIKAM----PFEPD-EPTWAALLSACKHHRNTE 424 (610)
Q Consensus 351 ~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~-~~~~~~ll~~~~~~g~~~ 424 (610)
+.|++..|.+.|...++.|.-.+ ....+--|...+...|++++|..+|..+ |-.|- +....-|.......|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 33445555555555554321110 1123333444444555555554444444 11111 223333334444444444
Q ss_pred HHHHHHHHHhcCCCC
Q 037713 425 MGTRVANHLLSLKPE 439 (610)
Q Consensus 425 ~a~~~~~~~~~~~p~ 439 (610)
+|...++++.+.-|.
T Consensus 233 ~A~atl~qv~k~YP~ 247 (262)
T COG1729 233 EACATLQQVIKRYPG 247 (262)
T ss_pred HHHHHHHHHHHHCCC
Confidence 444444444444444
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.67 Score=39.80 Aligned_cols=91 Identities=8% Similarity=-0.077 Sum_probs=62.7
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 037713 208 LVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287 (610)
Q Consensus 208 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 287 (610)
...-+.+.|++++|..+|+-+.-.+. -|+.-+..+..+|-..+.+++|...+......+. .|+...--...+|...|
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~--~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDF--YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCc--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhC
Confidence 34445677888888888888777653 4555666777777778888888888877766553 34444444567777777
Q ss_pred CHHHHHHHHHhcCC
Q 037713 288 DIIAAKDIFGRMRR 301 (610)
Q Consensus 288 ~~~~A~~~~~~~~~ 301 (610)
+.+.|+..|.....
T Consensus 120 ~~~~A~~~f~~a~~ 133 (165)
T PRK15331 120 KAAKARQCFELVNE 133 (165)
T ss_pred CHHHHHHHHHHHHh
Confidence 77777777776654
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=94.22 E-value=5.5 Score=38.32 Aligned_cols=202 Identities=9% Similarity=-0.006 Sum_probs=88.5
Q ss_pred CChhhHHHHHHHHHhCCCh----HHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHH--HHHHHHHHHHhCCCCch
Q 037713 200 RNLFLWTALVSGLVQSRNE----IDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLEL--GKQIHGLVIALGYESCL 273 (610)
Q Consensus 200 ~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~--a~~~~~~~~~~~~~~~~ 273 (610)
+|...-...+.++.+.|.. .+++..+..+.... |+...-...+.+....+.... ...........-..++.
T Consensus 66 ~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D---~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~ 142 (280)
T PRK09687 66 KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALED---KSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKST 142 (280)
T ss_pred CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcC---CCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCH
Confidence 3443334444555555542 35566666554333 566666566655554432110 01112222222223344
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 037713 274 FISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHG-QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHV 352 (610)
Q Consensus 274 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 352 (610)
.+-...+.++++.|+.+....+..-+..+|...-...+.++.+.+ ...++...+..+.. .+|...-...+.++.+.
T Consensus 143 ~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 143 NVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALR 219 (280)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHcc
Confidence 455555555666665433333333333444444444444444432 13345555555443 23445555555566665
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 037713 353 GLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPDEPTWAALLS 415 (610)
Q Consensus 353 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~ 415 (610)
|+. .+...+-...+. ++ .....+.+++..|.. +|...+.++ .-.||..+-...+.
T Consensus 220 ~~~-~av~~Li~~L~~----~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~d~~v~~~a~~ 275 (280)
T PRK09687 220 KDK-RVLSVLIKELKK----GT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFDDNEIITKAID 275 (280)
T ss_pred CCh-hHHHHHHHHHcC----Cc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCCChhHHHHHHH
Confidence 553 333333333331 11 123445555555553 344444444 22344444433333
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.20 E-value=2.2 Score=36.13 Aligned_cols=85 Identities=15% Similarity=0.241 Sum_probs=45.5
Q ss_pred HHhhhhhhccCChHHHHHHHHHHHHhCCCCCCchHHHHHHHhhcCCChHHHHHHHccCCCCCcchHHHHHHHHHcCCCch
Q 037713 7 LHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQ 86 (610)
Q Consensus 7 ~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~ 86 (610)
..++..+...+........++.+.+.+. .++...|.++..|++.+. ......++. ..+......+++.+.+.+.++
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~ 86 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN--KSNHYDIEKVGKLCEKAKLYE 86 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh--ccccCCHHHHHHHHHHcCcHH
Confidence 3455555555666666666666666652 456667777777765432 233333331 223333444555555555555
Q ss_pred HHHHHHHHh
Q 037713 87 KTISIFSTM 95 (610)
Q Consensus 87 ~A~~~~~~m 95 (610)
++.-++.++
T Consensus 87 ~~~~l~~k~ 95 (140)
T smart00299 87 EAVELYKKD 95 (140)
T ss_pred HHHHHHHhh
Confidence 555555544
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.38 Score=39.07 Aligned_cols=89 Identities=15% Similarity=0.153 Sum_probs=65.0
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCC----cchHhHHHHhhhhcch
Q 037713 384 LLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDP----SSYILLSNVYASAAMW 457 (610)
Q Consensus 384 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~ 457 (610)
++...|+++.|++.|.+. .+-| ....||.-..++.-+|+.++|+.-+++++++..+.. .+|+.-+.+|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 466778888888888776 3333 566788888888888888888888888887653221 2566777788888888
Q ss_pred hHHHHHHHHHhhCCC
Q 037713 458 QHVSKVRKLMSVMEV 472 (610)
Q Consensus 458 ~~a~~~~~~m~~~~~ 472 (610)
+.|..-|+...+.|-
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 888888877765554
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.92 E-value=1.8 Score=36.28 Aligned_cols=62 Identities=18% Similarity=0.141 Sum_probs=32.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC
Q 037713 312 VGTAQHGQAEETLALYDEMVSAGVK--PNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP 373 (610)
Q Consensus 312 ~~~~~~g~~~~A~~l~~~m~~~g~~--p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~ 373 (610)
....+.|++++|.+.|+.+...-.- -....-..|+.++.+.+++++|...++..++-+.-.|
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 3344556666666666666553111 1233444555666666666666666666655433333
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.90 E-value=1.4 Score=36.91 Aligned_cols=57 Identities=23% Similarity=0.373 Sum_probs=37.2
Q ss_pred HhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCc
Q 037713 386 SRSGHLDEAENLIKAM----PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442 (610)
Q Consensus 386 ~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 442 (610)
.+.|++++|.+.|+.+ |..| ....-..|+.++.+.+++++|...+++.++++|.++.
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 4567777777777766 2222 2334445667777777777777777777777776554
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.094 Score=31.71 Aligned_cols=32 Identities=19% Similarity=0.173 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHhcCCCC
Q 037713 408 PTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439 (610)
Q Consensus 408 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 439 (610)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46777888888888888888888888888885
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.67 Score=44.66 Aligned_cols=47 Identities=17% Similarity=0.064 Sum_probs=23.7
Q ss_pred HHhCCChHHHHHHHHHHHHcC--CCCCCHhHHHHHHHHHhccccHHHHHH
Q 037713 212 LVQSRNEIDAFYSFIEMRREG--VDIVDPLVLSSIVGACANFAVLELGKQ 259 (610)
Q Consensus 212 ~~~~g~~~~A~~~~~~m~~~~--~~~p~~~t~~~ll~~~~~~~~~~~a~~ 259 (610)
+.++.+.++|+..+.+-...- .. .--.++..+..+.+..|.++++..
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~-~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLM-GRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHH-HHHHHhccchhhhhhhHHHHHHHH
Confidence 445566677766666554321 10 122344555555555555555443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.54 E-value=5.9 Score=36.34 Aligned_cols=25 Identities=4% Similarity=0.038 Sum_probs=12.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHH
Q 037713 205 WTALVSGLVQSRNEIDAFYSFIEMR 229 (610)
Q Consensus 205 ~~~li~~~~~~g~~~~A~~~~~~m~ 229 (610)
|.--..+|-...++++|...+.+..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHH
Confidence 3334445555555555555554443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.52 E-value=13 Score=40.32 Aligned_cols=174 Identities=13% Similarity=0.039 Sum_probs=102.6
Q ss_pred HHHHHHHhhcCCChHHHHHHHccCCCCCcchHHHHH----HHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHh
Q 037713 41 PNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASIL----TAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACG 116 (610)
Q Consensus 41 ~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~ 116 (610)
...-+++..+...++.|..+-..-.- |...-..+. +-+.+.|++++|..-|-+-... +.|.. +++-+.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le~s~-----Vi~kfL 408 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--LEPSE-----VIKKFL 408 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc--CChHH-----HHHHhc
Confidence 45567788888888888888766432 222223333 3456789999999888776543 44432 344444
Q ss_pred ccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhh--HHHHHHHHHhcCCHHHHHHHH
Q 037713 117 SLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS--WTAMLSAYARSGRKKDAMEIF 194 (610)
Q Consensus 117 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~li~~~~~~g~~~~A~~~~ 194 (610)
.......-...++.+.+.|+. +...-+.|+++|.+.++.+.-.++.+... ..... ....+..+-+.+-.++|.-+-
T Consensus 409 daq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA 486 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLA 486 (933)
T ss_pred CHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHH
Confidence 445555666778888888854 44555779999999999988888877666 21111 223344444444444444433
Q ss_pred hhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHH
Q 037713 195 EQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEM 228 (610)
Q Consensus 195 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 228 (610)
.+... +. ..+--.+-..+++++|++.+..|
T Consensus 487 ~k~~~-he---~vl~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 487 TKFKK-HE---WVLDILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHhcc-CH---HHHHHHHHHhcCHHHHHHHHhcC
Confidence 32221 11 12222334456666666666554
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.50 E-value=3.1 Score=43.43 Aligned_cols=115 Identities=12% Similarity=0.052 Sum_probs=71.5
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHhCC-CC-----CCHHHHHHHHHHHHhcCchh
Q 037713 352 VGLVGKGRKLFKSMIEDYGITPSLQHYTC-LLDLLSRSGHLDEAENLIKAMP-FE-----PDEPTWAALLSACKHHRNTE 424 (610)
Q Consensus 352 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~-~~-----p~~~~~~~ll~~~~~~g~~~ 424 (610)
....+.+.++++.+.++ -|+...|.. -...+...|++++|.+.|++.- .+ -....+--+.-.+....+++
T Consensus 246 ~~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 34567777777777664 244444432 2345666788888888887651 11 12333444555577788888
Q ss_pred HHHHHHHHHhcCCCCCCcchH-hHHHHhhhhcch-------hHHHHHHHHHhh
Q 037713 425 MGTRVANHLLSLKPEDPSSYI-LLSNVYASAAMW-------QHVSKVRKLMSV 469 (610)
Q Consensus 425 ~a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~-------~~a~~~~~~m~~ 469 (610)
+|...+.++.+.+.-+...|. ..+-+|...|+. ++|.++++....
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 888888888876654444444 444455677777 777777776654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.40 E-value=13 Score=39.97 Aligned_cols=165 Identities=10% Similarity=0.004 Sum_probs=80.8
Q ss_pred HHHhhcCCChHHHHHHHccCCCC-----CcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccC
Q 037713 45 IDAYGKCDLVQYAHHLLEEMPQR-----DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLG 119 (610)
Q Consensus 45 i~~~~~~g~~~~A~~~f~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~ 119 (610)
++.+.+.+.+++|+..-+..+.. -...+-..|..+.-.|++++|-...-.|... +..-|.-.+..++..+
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn-----~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN-----NAAEWELWVFKFAELD 437 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc-----hHHHHHHHHHHhcccc
Confidence 45666677777777776655421 2234777777777778888877777776542 3444444444444444
Q ss_pred CcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037713 120 ATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPV 199 (610)
Q Consensus 120 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 199 (610)
+... +...+-...-..+..+|..++..+.. ..-..+++...+.+...|+.+--.- ....-+++-.+
T Consensus 438 ~l~~---Ia~~lPt~~~rL~p~vYemvLve~L~----~~~~~F~e~i~~Wp~~Lys~l~iis-------a~~~q~~q~Se 503 (846)
T KOG2066|consen 438 QLTD---IAPYLPTGPPRLKPLVYEMVLVEFLA----SDVKGFLELIKEWPGHLYSVLTIIS-------ATEPQIKQNSE 503 (846)
T ss_pred ccch---hhccCCCCCcccCchHHHHHHHHHHH----HHHHHHHHHHHhCChhhhhhhHHHh-------hcchHHHhhcc
Confidence 4332 22222221112345566666666655 2223333333333333333221110 00011111111
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 037713 200 RNLFLWTALVSGLVQSRNEIDAFYSFIEMR 229 (610)
Q Consensus 200 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 229 (610)
+...-..|...|...+++..|+.++-..+
T Consensus 504 -~~~L~e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 504 -STALLEVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred -chhHHHHHHHHHHHccChHHHHHHHHhcc
Confidence 11112236677777777777777776554
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.16 Score=30.52 Aligned_cols=33 Identities=24% Similarity=0.283 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC
Q 037713 408 PTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440 (610)
Q Consensus 408 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 440 (610)
..|..+...+...|++++|++.++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356667777888888888888888888888764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.34 E-value=1.7 Score=41.58 Aligned_cols=154 Identities=8% Similarity=0.040 Sum_probs=82.6
Q ss_pred hcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH--HHH--HHHHHHhccCCHHH
Q 037713 285 KCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEV--TFV--GLIYACSHVGLVGK 357 (610)
Q Consensus 285 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~--~ll~a~~~~g~~~~ 357 (610)
..|+..+|-..++++.+ .|..+|+--=.+|..+|+.+.-...+++.... -.||.. +|. .+.-++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 34666666666666653 36667776667777777777777777766543 223332 222 22334446677777
Q ss_pred HHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCC----HHHHHHHHHHHHhcCchhHHHHHHH
Q 037713 358 GRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPF--EPD----EPTWAALLSACKHHRNTEMGTRVAN 431 (610)
Q Consensus 358 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~p~----~~~~~~ll~~~~~~g~~~~a~~~~~ 431 (610)
|++.-++..+- .+.|.-.-.++...+.-.|++.++.++..+-.. +.. ...|-...-.+...+.++.|+++|+
T Consensus 194 AEk~A~ralqi--N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 194 AEKQADRALQI--NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred HHHHHHhhccC--CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 77766655431 122333444555566667777777777665511 100 1112122222344567777777776
Q ss_pred HHh--cCCCCCC
Q 037713 432 HLL--SLKPEDP 441 (610)
Q Consensus 432 ~~~--~~~p~~~ 441 (610)
.-+ +++.+|.
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 433 4444443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.28 E-value=12 Score=39.12 Aligned_cols=157 Identities=15% Similarity=0.096 Sum_probs=99.4
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChh------HHHHHHHHHH----hCCChHHHHHHHHhcCC--CChhhHH
Q 037713 108 FASLVKACGSLGATRLGKQVHACFVLSPFCDDDV------VKSSLVDMYA----KCGLPNNARAVFDSIKL--KNSVSWT 175 (610)
Q Consensus 108 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~------~~~~li~~~~----~~g~~~~A~~~~~~m~~--~~~~~~~ 175 (610)
+..+++..+=.||-+.|.+.+....+.+--..+. .|+..+..+. .....+.|.++++.+.. |+...|.
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl 270 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFL 270 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 3344555555688888888888876643111111 2233333222 24567888899988875 6776665
Q ss_pred HHH-HHHHhcCCHHHHHHHHhhCCCC-------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHH
Q 037713 176 AML-SAYARSGRKKDAMEIFEQAPVR-------NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGA 247 (610)
Q Consensus 176 ~li-~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~ 247 (610)
..- ..+...|++++|.+.|++.... ....+--+.-.+.-.++|++|.+.|..+.+..- -...+|.-+..+
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~--WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK--WSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc--cHHHHHHHHHHH
Confidence 543 4456789999999999865431 223444556667788899999999999988652 455666655555
Q ss_pred Hh-ccccH-------HHHHHHHHHHHH
Q 037713 248 CA-NFAVL-------ELGKQIHGLVIA 266 (610)
Q Consensus 248 ~~-~~~~~-------~~a~~~~~~~~~ 266 (610)
|. ..++. ++|..++.++..
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 43 45555 666666666543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.13 E-value=4.3 Score=38.40 Aligned_cols=120 Identities=12% Similarity=0.136 Sum_probs=79.2
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCchh
Q 037713 348 ACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAA---LLSACKHHRNTE 424 (610)
Q Consensus 348 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~---ll~~~~~~g~~~ 424 (610)
.....|+..+|..+|...... .+-+...-..|...|...|+.+.|..++..+|..-...-+.. -+..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 455678888888888877663 233356666788888889999999999988864433333333 122233333333
Q ss_pred HHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhC
Q 037713 425 MGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 425 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 470 (610)
+... ++.-...+|+|...-..|+..|...|+.++|.+.+-.+.++
T Consensus 221 ~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 221 EIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2222 23334668988888889999999999999998876665443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.06 E-value=6.8 Score=37.14 Aligned_cols=136 Identities=12% Similarity=0.060 Sum_probs=88.3
Q ss_pred HHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCC-hh------hHHHHHHHHHhcCC
Q 037713 114 ACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKN-SV------SWTAMLSAYARSGR 186 (610)
Q Consensus 114 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~------~~~~li~~~~~~g~ 186 (610)
.....++...+...+....... +.+....-.|..+|...|+.+.|..++..++... .. .+-.++.-....++
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 4567788999999999888765 4456677778899999999999999999988441 11 12233333344444
Q ss_pred HHHHHHHHhhCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccc
Q 037713 187 KKDAMEIFEQAPVR-NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFA 252 (610)
Q Consensus 187 ~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~ 252 (610)
..+..+-+.. .| |...--.+...+...|+.++|++.+-.+.+.....-|...-..++..+.-.|
T Consensus 222 ~~~l~~~~aa--dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 222 IQDLQRRLAA--DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 4444444443 23 4555556777888899999998888777765432234444445554444444
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.00 E-value=4.9 Score=40.75 Aligned_cols=157 Identities=11% Similarity=0.114 Sum_probs=95.7
Q ss_pred hHH--HHHHHHHHhc-----CChHHHHHHHHHHHH-cCCCCCH-HHHHHHHHHHhc---------cCCHHHHHHHHHHhH
Q 037713 305 VSW--TSIIVGTAQH-----GQAEETLALYDEMVS-AGVKPNE-VTFVGLIYACSH---------VGLVGKGRKLFKSMI 366 (610)
Q Consensus 305 ~~~--~~li~~~~~~-----g~~~~A~~l~~~m~~-~g~~p~~-~t~~~ll~a~~~---------~g~~~~a~~~~~~~~ 366 (610)
..| ..++.+.... ...+.|+.+|.+... ..+.|+. ..|..+..++.. .....+|.++-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 5555554441 134577888888772 2345553 333333222221 234556666666666
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcch
Q 037713 367 EDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD-EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSY 444 (610)
Q Consensus 367 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 444 (610)
+ --+.|......+..++.-.|+++.|..+|++. .+.|| ..+|....-.+.-.|+.++|.+.+++.++++|....+-
T Consensus 332 e--ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 332 D--ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred h--cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 5 23446667777777777788899999999888 56676 44555555557778999999999999999998754332
Q ss_pred H--hHHHHhhhhcchhHHHHHH
Q 037713 445 I--LLSNVYASAAMWQHVSKVR 464 (610)
Q Consensus 445 ~--~l~~~~~~~g~~~~a~~~~ 464 (610)
. ..+++|...+ .++|.+++
T Consensus 410 ~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 410 VIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred HHHHHHHHHcCCc-hhhhHHHH
Confidence 2 2333555544 45555543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.99 E-value=3 Score=43.00 Aligned_cols=135 Identities=19% Similarity=0.143 Sum_probs=79.6
Q ss_pred hHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcC
Q 037713 239 LVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHG 318 (610)
Q Consensus 239 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 318 (610)
.....++.-+.+.|..+.|.++-.. . ..-.+...++|+++.|.++-++.. +...|..|.......|
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D---------~---~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g 361 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTD---------P---DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQG 361 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCC---------h---HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcC
Confidence 3345555555555665555554321 1 122345567888888877766654 5668888888888888
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 037713 319 QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLI 398 (610)
Q Consensus 319 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 398 (610)
+.+-|.+.|.+... |..|+--|.-.|+.+.-.++.+....+ | -++....++.-.|+.++..+++
T Consensus 362 ~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~-~------~~n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 362 NIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER-G------DINIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp BHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT-T-------HHHHHHHHHHHT-HHHHHHHH
T ss_pred CHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc-c------CHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888876532 344555566677776666665555442 2 2344444455567777777777
Q ss_pred HhCCC
Q 037713 399 KAMPF 403 (610)
Q Consensus 399 ~~m~~ 403 (610)
.+.+.
T Consensus 426 ~~~~~ 430 (443)
T PF04053_consen 426 IETGR 430 (443)
T ss_dssp HHTT-
T ss_pred HHcCC
Confidence 66643
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.93 E-value=6.5 Score=40.54 Aligned_cols=46 Identities=15% Similarity=0.245 Sum_probs=20.9
Q ss_pred HHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhh
Q 037713 149 MYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196 (610)
Q Consensus 149 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 196 (610)
...++|+++.|.++.++.. +...|..|.....+.|+++-|++.|.+
T Consensus 327 LAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 327 LALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQK 372 (443)
T ss_dssp HHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3444555555544443333 333444444444444555444444444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.87 E-value=1.1 Score=42.82 Aligned_cols=159 Identities=12% Similarity=0.048 Sum_probs=115.8
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHH----HHHHHhcCCH
Q 037713 316 QHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL----LDLLSRSGHL 391 (610)
Q Consensus 316 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l----i~~~~~~g~~ 391 (610)
-+|+..+|-..++++.+. .+-|...+...=.+|...|+.+.-...++++.. ...||...|..+ .-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 478888999999999886 455788888888999999999999999988875 345666555444 3445689999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCC----CCcchHhHHHHhhhhcchhHHHHHHH
Q 037713 392 DEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE----DPSSYILLSNVYASAAMWQHVSKVRK 465 (610)
Q Consensus 392 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~ 465 (610)
++|++.-++. .+.| |.-.-.++.......|+..++.++..+-...-.. -.-.|-..+-.+...+.++.|.++++
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999887 5554 4555566667778889999999887765422111 11234455566777799999999998
Q ss_pred HHhhCCCccCCc
Q 037713 466 LMSVMEVKKEPG 477 (610)
Q Consensus 466 ~m~~~~~~~~~~ 477 (610)
.-.-+...++.+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 866555655554
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=92.72 E-value=13 Score=38.02 Aligned_cols=56 Identities=13% Similarity=0.135 Sum_probs=27.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 037713 310 IIVGTAQHGQAEETLALYDEMVSAGVKP-NEVTFVGLIYACSHVGLVGKGRKLFKSM 365 (610)
Q Consensus 310 li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 365 (610)
+..+..+.|+.++|++.|++|.+....- +......|+.++...+.+.++..++.+-
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 3444445566666666666665432111 1223344555555555555555555543
|
The molecular function of this protein is uncertain. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=92.55 E-value=5.1 Score=32.92 Aligned_cols=65 Identities=17% Similarity=0.228 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC
Q 037713 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGI 371 (610)
Q Consensus 305 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 371 (610)
......+..+...|+-++-.+++.++.+ .-.|++.....+..||.+.|+..++.+++.++.++ |+
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~ 151 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEK-GL 151 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-ch
Confidence 3445556677778888887788777764 23567777777888888888888888888877764 54
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.44 E-value=2.1 Score=40.06 Aligned_cols=95 Identities=16% Similarity=0.152 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCH-HHHHHHH
Q 037713 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVK--PNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSL-QHYTCLL 382 (610)
Q Consensus 306 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~li 382 (610)
.|+.-+..+ +.|++.+|..-|...++.... -....+-.|..++...|++++|..+|..+.+.++-.|.. +.+--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 366555443 456677777777777764321 012234457777777777777777777777766555543 6666677
Q ss_pred HHHHhcCCHHHHHHHHHhC
Q 037713 383 DLLSRSGHLDEAENLIKAM 401 (610)
Q Consensus 383 ~~~~~~g~~~~A~~~~~~m 401 (610)
....+.|+.++|..+|++.
T Consensus 223 ~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 223 VSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHhcCHHHHHHHHHHH
Confidence 7777777777777777766
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=92.05 E-value=14 Score=36.86 Aligned_cols=148 Identities=8% Similarity=0.032 Sum_probs=77.8
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC--HH
Q 037713 302 KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKP---NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPS--LQ 376 (610)
Q Consensus 302 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~--~~ 376 (610)
....+|..+...+.+.|+++.|...+.++...+..+ +......-....-..|+..+|...++...+. ....+ ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence 355678888888888888888888888877643211 2233333445556678888888887777662 11111 11
Q ss_pred HHHHHHHHHHhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CchhHHHHHHHHHhcCCCCCCcchHhHHH
Q 037713 377 HYTCLLDLLSRSGHLDEAENL-IKAMPFEPDEPTWAALLSACKHH------RNTEMGTRVANHLLSLKPEDPSSYILLSN 449 (610)
Q Consensus 377 ~~~~li~~~~~~g~~~~A~~~-~~~m~~~p~~~~~~~ll~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 449 (610)
....+...+.. ..+..... ........-...+..+..-+... +..+.+...|+++.+..|.....+..++.
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 11111111000 00000000 00000000012222222333333 78889999999999999987777776666
Q ss_pred Hhh
Q 037713 450 VYA 452 (610)
Q Consensus 450 ~~~ 452 (610)
.+.
T Consensus 301 ~~~ 303 (352)
T PF02259_consen 301 FND 303 (352)
T ss_pred HHH
Confidence 654
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=91.98 E-value=38 Score=41.68 Aligned_cols=309 Identities=10% Similarity=0.005 Sum_probs=176.8
Q ss_pred HHHHHHHhCCChHHHHHHHHhc----CCCC--hhhHHHHHHHHHhcCCHHHHHHHHhh-CCCCChhhHHHHHHHHHhCCC
Q 037713 145 SLVDMYAKCGLPNNARAVFDSI----KLKN--SVSWTAMLSAYARSGRKKDAMEIFEQ-APVRNLFLWTALVSGLVQSRN 217 (610)
Q Consensus 145 ~li~~~~~~g~~~~A~~~~~~m----~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~ 217 (610)
.|..+-.+++.+.+|...++.- ...+ ..-+-.+...|+.-+++|....+... ...++ ...-|.-....|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhcc
Confidence 4555777899999999999883 2222 22334444588888888877766663 33332 2345566777899
Q ss_pred hHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchh-HHHHHHHHHHhcCCHHHHHHHH
Q 037713 218 EIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLF-ISNAIVDMYAKCSDIIAAKDIF 296 (610)
Q Consensus 218 ~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~y~~~g~~~~A~~~~ 296 (610)
+..|...|+.+.+.+ |+...+++.++......+.++......+-..... .+... .++.=+.+-.+.++++......
T Consensus 1465 ~~da~~Cye~~~q~~--p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD--PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred HHHHHHHHHHhhcCC--CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 999999999999877 2457788888887777777777666444333322 22222 2333344556777877776665
Q ss_pred HhcCCCChhHHHHH-H-HHHHhcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH--------
Q 037713 297 GRMRRKDVVSWTSI-I-VGTAQHG--QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKS-------- 364 (610)
Q Consensus 297 ~~~~~~~~~~~~~l-i-~~~~~~g--~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~-------- 364 (610)
. ..+..+|.+. + ..+.+.. +.-.-.++.+.+++.-+. =+.+|+..|.+..+.++.-.
T Consensus 1542 ~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~--------~lsa~s~~~Sy~~~Y~~~~kLH~l~el~ 1610 (2382)
T KOG0890|consen 1542 S---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIE--------NLSACSIEGSYVRSYEILMKLHLLLELE 1610 (2382)
T ss_pred h---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhh--------hHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 5 5566667665 2 2222222 221222344444332111 12233333322222221111
Q ss_pred --hHHhcCCCCCHH------HHHHH---HHHHHhcCCHHHHHH-HHHhCCCCC-----CHHHHHHHHHHHHhcCchhHHH
Q 037713 365 --MIEDYGITPSLQ------HYTCL---LDLLSRSGHLDEAEN-LIKAMPFEP-----DEPTWAALLSACKHHRNTEMGT 427 (610)
Q Consensus 365 --~~~~~~~~~~~~------~~~~l---i~~~~~~g~~~~A~~-~~~~m~~~p-----~~~~~~~ll~~~~~~g~~~~a~ 427 (610)
.....+..++.. -|-.- .+-+.+....--|.+ .+......| -..+|......++..|.++.|.
T Consensus 1611 ~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~ 1690 (2382)
T KOG0890|consen 1611 NSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQ 1690 (2382)
T ss_pred HHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHH
Confidence 111113333321 12111 122222111111111 011111122 2567888888899999999999
Q ss_pred HHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhCCC
Q 037713 428 RVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEV 472 (610)
Q Consensus 428 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 472 (610)
...-++.+..+ +..+...+......|+-..|..+++...+...
T Consensus 1691 nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1691 NALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 99888887775 47899999999999999999999988775444
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.90 E-value=11 Score=35.15 Aligned_cols=158 Identities=18% Similarity=0.230 Sum_probs=89.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHh-
Q 037713 311 IVGTAQHGQAEETLALYDEMVSAG--VKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSR- 387 (610)
Q Consensus 311 i~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~- 387 (610)
+..-.+.|++++|.+.|+.+.... -+-...+...++.++-+.+++++|...+++....++-.||.. |...+.+++.
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs~~ 119 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLSYF 119 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHHHh
Confidence 333445566666666666665432 111244455555666666666666666666666555555541 2222222221
Q ss_pred ------cCCHHHHHHHHHhC-------C---CCCCHHH----------H--HHHHHHHHhcCchhHHHHHHHHHhcCCCC
Q 037713 388 ------SGHLDEAENLIKAM-------P---FEPDEPT----------W--AALLSACKHHRNTEMGTRVANHLLSLKPE 439 (610)
Q Consensus 388 ------~g~~~~A~~~~~~m-------~---~~p~~~~----------~--~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 439 (610)
..+...+.+-|..+ | ..||... . ..+..-|.+.|.+..|..-++.+++.-|+
T Consensus 120 ~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~ 199 (254)
T COG4105 120 FQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPD 199 (254)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccc
Confidence 11222222222222 1 1223211 1 12334478899999999999999987665
Q ss_pred CCc---chHhHHHHhhhhcchhHHHHHHHHHhh
Q 037713 440 DPS---SYILLSNVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 440 ~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~ 469 (610)
.+. ++..+..+|...|..++|.+.-+.+..
T Consensus 200 t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 200 TSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred ccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 443 556778889999999999998887754
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=91.84 E-value=2.5 Score=42.77 Aligned_cols=125 Identities=9% Similarity=0.005 Sum_probs=89.1
Q ss_pred HHHHHHHhcc-----CCHHHHHHHHHHhHHhcCCCCCH-HHHHHHHHHHHh---------cCCHHHHHHHHHhC-CCCC-
Q 037713 343 VGLIYACSHV-----GLVGKGRKLFKSMIEDYGITPSL-QHYTCLLDLLSR---------SGHLDEAENLIKAM-PFEP- 405 (610)
Q Consensus 343 ~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~---------~g~~~~A~~~~~~m-~~~p- 405 (610)
..++.+..+. ...+.|..+|.+......+.|+- ..|..+...+.. .....+|.++.++. .+.|
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 4455554442 23567888898887444566653 455555444322 23345566666655 3444
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHH
Q 037713 406 DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLM 467 (610)
Q Consensus 406 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 467 (610)
|+.....+..+....++.+.|...|+++..++|+.+.+|...+....-+|+.++|.+..+..
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 56666666666777888999999999999999999999999999999999999999988874
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=91.73 E-value=4 Score=41.57 Aligned_cols=150 Identities=11% Similarity=0.080 Sum_probs=76.5
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 037713 315 AQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEA 394 (610)
Q Consensus 315 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 394 (610)
-+..+...-+++-++..+ +.||-.+.-.++ +--.+..+.++.+++++..+. | ...+..-- .....|..
T Consensus 179 WRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-g----E~~lg~s~-~~~~~g~~--- 246 (539)
T PF04184_consen 179 WRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-G----EASLGKSQ-FLQHHGHF--- 246 (539)
T ss_pred HhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-H----HHhhchhh-hhhcccch---
Confidence 344555555555555554 345543322222 333445577777777776553 1 00100000 00011111
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCC--CCcchHhHHHHhhhhcchhHHHHHHHHHhhCCC
Q 037713 395 ENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE--DPSSYILLSNVYASAAMWQHVSKVRKLMSVMEV 472 (610)
Q Consensus 395 ~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 472 (610)
.+.+..-...|-..+=..|...+.+.|+.++|.+.++++++..|. +......|+..+...+.+.++..++.+..+-..
T Consensus 247 ~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~l 326 (539)
T PF04184_consen 247 WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISL 326 (539)
T ss_pred hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccC
Confidence 111111111222333344566667778888888888887766654 334566777778888888888887777755444
Q ss_pred ccCC
Q 037713 473 KKEP 476 (610)
Q Consensus 473 ~~~~ 476 (610)
.+..
T Consensus 327 pkSA 330 (539)
T PF04184_consen 327 PKSA 330 (539)
T ss_pred CchH
Confidence 4433
|
The molecular function of this protein is uncertain. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.65 E-value=4.6 Score=33.07 Aligned_cols=87 Identities=16% Similarity=0.093 Sum_probs=37.5
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCH--HHHHHHHHHHHhcCCH
Q 037713 314 TAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSL--QHYTCLLDLLSRSGHL 391 (610)
Q Consensus 314 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~ 391 (610)
++..|+.+.|++.|.+.... .+-+...||.-..++.-.|+.++|..-+++..+-.|-.... ..|..-...|...|+.
T Consensus 53 laE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 34445555555555554443 11234445555555555555555555444444422211111 1122222334455555
Q ss_pred HHHHHHHHhC
Q 037713 392 DEAENLIKAM 401 (610)
Q Consensus 392 ~~A~~~~~~m 401 (610)
+.|..-|+..
T Consensus 132 d~AR~DFe~A 141 (175)
T KOG4555|consen 132 DAARADFEAA 141 (175)
T ss_pred HHHHHhHHHH
Confidence 5555555443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.64 E-value=11 Score=34.96 Aligned_cols=157 Identities=15% Similarity=0.158 Sum_probs=90.1
Q ss_pred HhcCCHHHHHHHHHhcCCC------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCH--HHHHHHHHHHhccC-
Q 037713 284 AKCSDIIAAKDIFGRMRRK------DVVSWTSIIVGTAQHGQAEETLALYDEMVSAG-VKPNE--VTFVGLIYACSHVG- 353 (610)
Q Consensus 284 ~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~--~t~~~ll~a~~~~g- 353 (610)
.+.|++++|.+.|+.+... ...+--.++-++-+.+++++|+..+++....- -.||. ..|...+.-+....
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 3567777777777777642 12334445556667788888888877766532 23332 23333333222221
Q ss_pred ---C---HHHHHHHHHHhHHhcCCC---CCHHH------------HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----H
Q 037713 354 ---L---VGKGRKLFKSMIEDYGIT---PSLQH------------YTCLLDLLSRSGHLDEAENLIKAM-PFEPD----E 407 (610)
Q Consensus 354 ---~---~~~a~~~~~~~~~~~~~~---~~~~~------------~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~ 407 (610)
+ ..+|..-|+.++.++.-. ||... =..+.+-|.+.|.+..|..-+++| .--|+ .
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~ 204 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVR 204 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchH
Confidence 2 234555555555543221 22211 123456688999999988888887 11222 3
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC
Q 037713 408 PTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440 (610)
Q Consensus 408 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 440 (610)
..+-.+..+|...|-.++|...-+-+..-.|++
T Consensus 205 eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 205 EALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 445567788999999999988765554444554
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=91.62 E-value=14 Score=35.88 Aligned_cols=127 Identities=20% Similarity=0.286 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHh--cC----CHHHHHHHHHhcCC-------CChhHHHHHHHHHHhcCC--
Q 037713 255 ELGKQIHGLVIALGYESCLFISNAIVDMYAK--CS----DIIAAKDIFGRMRR-------KDVVSWTSIIVGTAQHGQ-- 319 (610)
Q Consensus 255 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~--~g----~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~-- 319 (610)
+....+++.+.+.|+..+..++-+-...... .. ....|..+|+.|++ ++-.++.+|+.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3344455555555555554444332222211 11 24556777777764 244555555544 2222
Q ss_pred --hHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCC---HHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 037713 320 --AEETLALYDEMVSAGVKPNE-VTFVGLIYACSHVGL---VGKGRKLFKSMIEDYGITPSLQHYTCLLDL 384 (610)
Q Consensus 320 --~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 384 (610)
.+.+..+|+.+.+.|+..+. .-+.+-+-++..... +.++.++++.+.+. |+++...+|..+.-+
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHHH
Confidence 35667788888887776543 233333333333222 34677888888775 888888777665443
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=91.25 E-value=26 Score=38.29 Aligned_cols=116 Identities=10% Similarity=0.129 Sum_probs=65.3
Q ss_pred cCChHHHHHHHHHHHHcC-CCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 037713 317 HGQAEETLALYDEMVSAG-VKPNE--VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDE 393 (610)
Q Consensus 317 ~g~~~~A~~l~~~m~~~g-~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 393 (610)
..+.+.|..++....... ..+.. .....+.......+..+++...+...... ..+......-+..-.+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHH
Confidence 445678888888764432 33322 22333433333333255666666654331 2244444555555558888888
Q ss_pred HHHHHHhCCCC-CCHHHHHH-HHHHHHhcCchhHHHHHHHHHhc
Q 037713 394 AENLIKAMPFE-PDEPTWAA-LLSACKHHRNTEMGTRVANHLLS 435 (610)
Q Consensus 394 A~~~~~~m~~~-p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~ 435 (610)
+...|..|+.. .+..-|.- +..+....|+.++|...|+++..
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88888888311 11122222 44555667888888888888743
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=91.23 E-value=9.4 Score=33.22 Aligned_cols=31 Identities=10% Similarity=0.124 Sum_probs=16.7
Q ss_pred HHHHhHHCCCCCCChhhHHHHHHHHhccCCcH
Q 037713 91 IFSTMLALDKLQPDHFVFASLVKACGSLGATR 122 (610)
Q Consensus 91 ~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~ 122 (610)
..+.+.+.+ ++|+...+..+++.+.+.|.+.
T Consensus 16 YirSl~~~~-i~~~~~L~~lli~lLi~~~~~~ 46 (167)
T PF07035_consen 16 YIRSLNQHN-IPVQHELYELLIDLLIRNGQFS 46 (167)
T ss_pred HHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHH
Confidence 334444444 5566666666666666555543
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.97 E-value=13 Score=34.54 Aligned_cols=211 Identities=14% Similarity=0.196 Sum_probs=120.9
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHc---CCC-CCCHhHHHHHHHHHhccccHHHHHHHHHHHHHh-----CCCCchh
Q 037713 204 LWTALVSGLVQSRNEIDAFYSFIEMRRE---GVD-IVDPLVLSSIVGACANFAVLELGKQIHGLVIAL-----GYESCLF 274 (610)
Q Consensus 204 ~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~ 274 (610)
+.-.+|..+.+.|++++.++.|.+|.-- .+. .-+..+.++++...+...+.+....+++.-.+. +-..=-.
T Consensus 67 ALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFK 146 (440)
T KOG1464|consen 67 ALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFK 146 (440)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeee
Confidence 3345666777777777777777766421 111 134556677777777666666666666544332 0011112
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCC---------------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCC
Q 037713 275 ISNAIVDMYAKCSDIIAAKDIFGRMRRK---------------DVVSWTSIIVGTAQHGQAEETLALYDEMVSAG-VKPN 338 (610)
Q Consensus 275 ~~~~li~~y~~~g~~~~A~~~~~~~~~~---------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~ 338 (610)
+-+.|...|...|++..-.+++.++.+. -...|..=|+.|....+-..-..+|++...-. ..|.
T Consensus 147 TNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPH 226 (440)
T KOG1464|consen 147 TNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPH 226 (440)
T ss_pred ccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCc
Confidence 3355677777788888777777776521 13467777888888887777777888765422 2344
Q ss_pred HHHHHHHHHHHh-----ccCCHHHHHHHHHHhHHhcCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHh--C-C--C
Q 037713 339 EVTFVGLIYACS-----HVGLVGKGRKLFKSMIEDYGITPSL-----QHYTCLLDLLSRSGHLDEAENLIKA--M-P--F 403 (610)
Q Consensus 339 ~~t~~~ll~a~~-----~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~--m-~--~ 403 (610)
+.. ..+|+-|. +.|.+++|..-|-++.+.|.-..++ --|..|..++.+.|-- -|+. . | -
T Consensus 227 PlI-mGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iN-----PFDsQEAKPyKN 300 (440)
T KOG1464|consen 227 PLI-MGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGIN-----PFDSQEAKPYKN 300 (440)
T ss_pred hHH-HhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCC-----CCcccccCCCCC
Confidence 433 34555554 4577777765444444434322222 3356666777666521 1111 1 2 3
Q ss_pred CCCHHHHHHHHHHHHhc
Q 037713 404 EPDEPTWAALLSACKHH 420 (610)
Q Consensus 404 ~p~~~~~~~ll~~~~~~ 420 (610)
.|.......|+.+|...
T Consensus 301 dPEIlAMTnlv~aYQ~N 317 (440)
T KOG1464|consen 301 DPEILAMTNLVAAYQNN 317 (440)
T ss_pred CHHHHHHHHHHHHHhcc
Confidence 35566777888888754
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.83 E-value=12 Score=33.76 Aligned_cols=162 Identities=13% Similarity=0.115 Sum_probs=78.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 037713 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLD 383 (610)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 383 (610)
+..||-+.--+...|+++.|.+.|+...+....-+ .++..-.-++--.|++..|.+-|...-..-.-.|-...|--++.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~-Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E 177 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN-YAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE 177 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch-HHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 44566666666666777777777776665433222 22211122333456666666555444322112222223322222
Q ss_pred HHHhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC-------CcchHhHHHHhhhhc
Q 037713 384 LLSRSGHLDEAENL-IKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED-------PSSYILLSNVYASAA 455 (610)
Q Consensus 384 ~~~~~g~~~~A~~~-~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g 455 (610)
+.-++.+|..- .++.. ..|..-|...+-.+--..-.+ +.+++++.+...++ ..+|.-|+.-|...|
T Consensus 178 ---~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 178 ---QKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYLGKISE--ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred ---hhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHHhhccH--HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 23344444432 33331 223344444333322111111 11222332221111 357888999999999
Q ss_pred chhHHHHHHHHHhhCCC
Q 037713 456 MWQHVSKVRKLMSVMEV 472 (610)
Q Consensus 456 ~~~~a~~~~~~m~~~~~ 472 (610)
..++|..+++.....++
T Consensus 252 ~~~~A~~LfKLaiannV 268 (297)
T COG4785 252 DLDEATALFKLAVANNV 268 (297)
T ss_pred cHHHHHHHHHHHHHHhH
Confidence 99999999988765433
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.74 E-value=15 Score=34.74 Aligned_cols=59 Identities=12% Similarity=0.007 Sum_probs=51.1
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHh
Q 037713 410 WAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMS 468 (610)
Q Consensus 410 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 468 (610)
++.....|...|.+.+|.++.++++.++|-+...+-.|.+.|+..|+--+|.+-++.+.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34445668999999999999999999999999999999999999999777777777764
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.67 E-value=1.1 Score=39.51 Aligned_cols=87 Identities=14% Similarity=0.142 Sum_probs=65.3
Q ss_pred HHhcCCHHHHHHHHHhC-CCCCC------HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcch
Q 037713 385 LSRSGHLDEAENLIKAM-PFEPD------EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMW 457 (610)
Q Consensus 385 ~~~~g~~~~A~~~~~~m-~~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 457 (610)
+.+.|++++|..-|... ..-|. .+.|..-..+..+.+..+.|+.-..++++++|....+...-+.+|.+..++
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 45677777777777665 22222 344555556678888999999999999999998777777778899999999
Q ss_pred hHHHHHHHHHhhCC
Q 037713 458 QHVSKVRKLMSVME 471 (610)
Q Consensus 458 ~~a~~~~~~m~~~~ 471 (610)
++|.+-++.+.+..
T Consensus 185 eealeDyKki~E~d 198 (271)
T KOG4234|consen 185 EEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999888886543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.57 E-value=11 Score=40.90 Aligned_cols=139 Identities=18% Similarity=0.081 Sum_probs=69.0
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHH
Q 037713 280 VDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGR 359 (610)
Q Consensus 280 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 359 (610)
.+.+.+.|++++|...|-+...--.. ..+|.-|....+..+-..+++.+.+.|+. +...-..|+.+|.+.++.+.-.
T Consensus 375 gd~Ly~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~ 451 (933)
T KOG2114|consen 375 GDYLYGKGDFDEATDQYIETIGFLEP--SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLT 451 (933)
T ss_pred HHHHHhcCCHHHHHHHHHHHcccCCh--HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHH
Confidence 34444566666666555544321111 12344445555555666666666666655 3333345666666666666655
Q ss_pred HHHHHhHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHH
Q 037713 360 KLFKSMIEDYGIT-PSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVAN 431 (610)
Q Consensus 360 ~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 431 (610)
++.+..-+ |.- .| ....+..+.+.+-+++|..+-.+.+. +......+ +...+++++|.++++
T Consensus 452 efI~~~~~--g~~~fd---~e~al~Ilr~snyl~~a~~LA~k~~~--he~vl~il---le~~~ny~eAl~yi~ 514 (933)
T KOG2114|consen 452 EFISKCDK--GEWFFD---VETALEILRKSNYLDEAELLATKFKK--HEWVLDIL---LEDLHNYEEALRYIS 514 (933)
T ss_pred HHHhcCCC--cceeee---HHHHHHHHHHhChHHHHHHHHHHhcc--CHHHHHHH---HHHhcCHHHHHHHHh
Confidence 55443321 111 12 23345555566666666655555432 22222222 334566777766664
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=90.56 E-value=11 Score=32.82 Aligned_cols=132 Identities=9% Similarity=0.075 Sum_probs=86.1
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcC--CHHHHHHHHhhCCCCChh
Q 037713 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG--RKKDAMEIFEQAPVRNLF 203 (610)
Q Consensus 126 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~ 203 (610)
+....+.+.+++|+...+..+++.+.+.|++.....++.-=.-+|.......+-.+.... -..-|..++.++. .
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~----~ 90 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG----T 90 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh----h
Confidence 445556778999999999999999999999998888887666556555544443332211 1334455555543 2
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHH
Q 037713 204 LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIA 266 (610)
Q Consensus 204 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 266 (610)
.+..++..+...|++-+|+++.+..... +......++.+..+.++...--.++....+
T Consensus 91 ~~~~iievLL~~g~vl~ALr~ar~~~~~-----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 91 AYEEIIEVLLSKGQVLEALRYARQYHKV-----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHcCCc-----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4567778899999999999988775332 122224455666666665555555554444
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.54 E-value=2.1 Score=40.59 Aligned_cols=76 Identities=11% Similarity=0.165 Sum_probs=61.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 037713 273 LFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVS-----AGVKPNEVTFVG 344 (610)
Q Consensus 273 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~ 344 (610)
..++..++..+..+|+.+.+...++++.. -|...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 34677888999999999999999988874 3678999999999999999999999998765 677777766655
Q ss_pred HHHH
Q 037713 345 LIYA 348 (610)
Q Consensus 345 ll~a 348 (610)
...+
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5544
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=89.73 E-value=20 Score=34.54 Aligned_cols=62 Identities=13% Similarity=-0.048 Sum_probs=30.2
Q ss_pred hHHHHHHHHHhCCChH---HHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHh
Q 037713 204 LWTALVSGLVQSRNEI---DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIAL 267 (610)
Q Consensus 204 ~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 267 (610)
+...++.+|...+..+ +|..+++.+..... -.+.++..-+..+.+.++.+...+++..|+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~--~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYG--NKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC--CCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 4555666666665543 34445555544431 12333334444444455555555555555443
|
It is also involved in sporulation []. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=89.69 E-value=0.67 Score=39.47 Aligned_cols=84 Identities=10% Similarity=0.103 Sum_probs=48.0
Q ss_pred HHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHH
Q 037713 111 LVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDA 190 (610)
Q Consensus 111 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 190 (610)
+++.+.+.+.+......++.+.+.+...+....+.++..|++.++.+...++++.... .-...++..+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 3455555666666666777776655455667777777777777766666666663322 2233444555555555555
Q ss_pred HHHHhhC
Q 037713 191 MEIFEQA 197 (610)
Q Consensus 191 ~~~~~~~ 197 (610)
.-++.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 5555543
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=89.43 E-value=36 Score=37.07 Aligned_cols=211 Identities=12% Similarity=0.061 Sum_probs=94.3
Q ss_pred CcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCC-------cHHHHHHHHHHHhcCCCCCh
Q 037713 68 DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGA-------TRLGKQVHACFVLSPFCDDD 140 (610)
Q Consensus 68 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~-------~~~a~~~~~~~~~~g~~~~~ 140 (610)
+...| ++|-.+.|.|++++|.++..+.... .......|...++.+....+ -+....-+.+..+.....|+
T Consensus 111 ~~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~--~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dp 187 (613)
T PF04097_consen 111 GDPIW-ALIYYCLRCGDYDEALEVANENRNQ--FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDP 187 (613)
T ss_dssp TEEHH-HHHHHHHTTT-HHHHHHHHHHTGGG--S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-H
T ss_pred CCccH-HHHHHHHhcCCHHHHHHHHHHhhhh--hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCCh
Confidence 34456 5677889999999999999666553 56666788888888876432 23455556666655433354
Q ss_pred h---HHHHHHHHHHhCCChHHHH-HHHHhc-----------CCCC--------hhhHHHHHHHHHhcCCHHHHHHHHhhC
Q 037713 141 V---VKSSLVDMYAKCGLPNNAR-AVFDSI-----------KLKN--------SVSWTAMLSAYARSGRKKDAMEIFEQA 197 (610)
Q Consensus 141 ~---~~~~li~~~~~~g~~~~A~-~~~~~m-----------~~~~--------~~~~~~li~~~~~~g~~~~A~~~~~~~ 197 (610)
+ +|..+ ++|.-...-. .++..+ .+.+ ..++..+=+...+- ..+.|..
T Consensus 188 yK~AvY~il----g~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~-----Ge~~F~~- 257 (613)
T PF04097_consen 188 YKRAVYKIL----GRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKY-----GESHFNA- 257 (613)
T ss_dssp HHHHHHHHH----HT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH------GGGCTT-
T ss_pred HHHHHHHHH----hcCCccccchHHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHh-----chhhccc-
Confidence 3 34433 3333211111 111110 0000 11221111111111 1112222
Q ss_pred CCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhC-CCCchhHH
Q 037713 198 PVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALG-YESCLFIS 276 (610)
Q Consensus 198 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~ 276 (610)
..+.. .....+.-.|+++.|++.+-+ ..+.. .|.+.+.+.+.-+.-..-.+... ..+.... -.|...-+
T Consensus 258 -~~~p~---~Yf~~LlLtgqFE~AI~~L~~--~~~~~-~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~ 327 (613)
T PF04097_consen 258 -GSNPL---LYFQVLLLTGQFEAAIEFLYR--NEFNR-VDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNF 327 (613)
T ss_dssp ----------HHHHHHHTT-HHHHHHHHHT----T-H-HHHHHHHHHHHHTT---------------------------H
T ss_pred -chhHH---HHHHHHHHHhhHHHHHHHHHh--hccCc-ccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCH
Confidence 11222 234456678999999998877 22233 67777777776654433222211 2222111 01111445
Q ss_pred HHHHHHHHh---cCCHHHHHHHHHhcCC
Q 037713 277 NAIVDMYAK---CSDIIAAKDIFGRMRR 301 (610)
Q Consensus 277 ~~li~~y~~---~g~~~~A~~~~~~~~~ 301 (610)
..||..|.+ ..+..+|.+.|--+..
T Consensus 328 arLI~~Y~~~F~~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 328 ARLIGQYTRSFEITDPREALQYLYLICL 355 (613)
T ss_dssp HHHHHHHHHTTTTT-HHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 677777776 4577888887776653
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.10 E-value=5.6 Score=34.40 Aligned_cols=49 Identities=18% Similarity=0.249 Sum_probs=22.0
Q ss_pred hcCCHHHHHHHHhhCCCCChhhHHHHH-----HHHHhCCChHHHHHHHHHHHHc
Q 037713 183 RSGRKKDAMEIFEQAPVRNLFLWTALV-----SGLVQSRNEIDAFYSFIEMRRE 231 (610)
Q Consensus 183 ~~g~~~~A~~~~~~~~~~~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~~ 231 (610)
+.+..++|+..|..+...+--+|-.|. ....+.|+...|...|.+.-..
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d 123 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD 123 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc
Confidence 334444444444444433333333222 2344455555555555555443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=88.93 E-value=12 Score=33.14 Aligned_cols=56 Identities=16% Similarity=0.170 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCC------hhHHHHHHHHHHhcCChHHHHHHHHHH
Q 037713 275 ISNAIVDMYAKCSDIIAAKDIFGRMRRKD------VVSWTSIIVGTAQHGQAEETLALYDEM 330 (610)
Q Consensus 275 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m 330 (610)
.+..+.+.|.+.|+.+.|.+.|.++.+.. ...+-.+|......|++..+.....+.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34455555555555555555555554321 123334444444444554444444443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=88.91 E-value=1.4 Score=28.43 Aligned_cols=29 Identities=14% Similarity=0.030 Sum_probs=22.8
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 037713 204 LWTALVSGLVQSRNEIDAFYSFIEMRREG 232 (610)
Q Consensus 204 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 232 (610)
+|..+...|.+.|++++|.++|++..+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 56677778888888888888888888765
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=88.86 E-value=0.55 Score=28.16 Aligned_cols=31 Identities=16% Similarity=0.193 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHhcCCCC
Q 037713 409 TWAALLSACKHHRNTEMGTRVANHLLSLKPE 439 (610)
Q Consensus 409 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 439 (610)
+|..+...+...|++++|...|++.++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4566666777788888888888888777763
|
... |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=88.48 E-value=30 Score=35.01 Aligned_cols=395 Identities=12% Similarity=0.072 Sum_probs=194.0
Q ss_pred CChHHHHHHHHHHHHh-CCCCCCchHHHHHHHhhcCCChHHHHHHHccCCC-------C-----------CcchHHHHHH
Q 037713 17 QIALTVKTLHAQIIKL-GLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ-------R-----------DHVSWASILT 77 (610)
Q Consensus 17 ~~~~~~~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-------~-----------~~~~~~~li~ 77 (610)
++++........+.+. |-.+-...+-.|+ .-+.+.+..|.+.|..-.. | |..-=+..+.
T Consensus 59 ~nld~Me~~l~~l~~~~~~s~~l~LF~~L~--~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~ 136 (549)
T PF07079_consen 59 NNLDLMEKQLMELRQQFGKSAYLPLFKALV--AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAH 136 (549)
T ss_pred hhHHHHHHHHHHHHHhcCCchHHHHHHHHH--HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHH
Confidence 4455555555555443 3222222333332 2466888888887754321 1 2222355567
Q ss_pred HHHcCCCchHHHHHHHHhHHCC---CCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhc---CCCCChhHHHHHHHHHH
Q 037713 78 AYNQANLPQKTISIFSTMLALD---KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLS---PFCDDDVVKSSLVDMYA 151 (610)
Q Consensus 78 ~~~~~g~~~~A~~~~~~m~~~~---~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~li~~~~ 151 (610)
.+...|++.++..++++|...= ...-+..+|+.++-.+++ ..|-++++. .+-|| |--++-.|.
T Consensus 137 sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsr--------SYfLEl~e~~s~dl~pd---yYemilfY~ 205 (549)
T PF07079_consen 137 SLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSR--------SYFLELKESMSSDLYPD---YYEMILFYL 205 (549)
T ss_pred HHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhH--------HHHHHHHHhcccccChH---HHHHHHHHH
Confidence 7889999999999999987642 022578888876555443 344444332 22222 334455554
Q ss_pred hCCChHHHHHHHHhcCCCChhhHHHHHHHHH-----hcCCHHHHHHHHhhC-CCCC-hhhHHHHHHHHHhCCChHHHHHH
Q 037713 152 KCGLPNNARAVFDSIKLKNSVSWTAMLSAYA-----RSGRKKDAMEIFEQA-PVRN-LFLWTALVSGLVQSRNEIDAFYS 224 (610)
Q Consensus 152 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~-----~~g~~~~A~~~~~~~-~~~~-~~~~~~li~~~~~~g~~~~A~~~ 224 (610)
+.=..-++.. +++. .|.......++.... +.--+-++.+.++.- ..|+ ...-..|+..+.+ +.+++..+
T Consensus 206 kki~~~d~~~-Y~k~-~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ 281 (549)
T PF07079_consen 206 KKIHAFDQRP-YEKF-IPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHF 281 (549)
T ss_pred HHHHHHhhch-HHhh-CcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHH
Confidence 3211111100 0000 000001111111110 001111222222221 1111 1112223333333 44444444
Q ss_pred HHHHHHcCCCC---CCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHH-------HHHHHHHhc----CCHH
Q 037713 225 FIEMRREGVDI---VDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISN-------AIVDMYAKC----SDII 290 (610)
Q Consensus 225 ~~~m~~~~~~~---p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~li~~y~~~----g~~~ 290 (610)
-+.+....+.+ .=..+|..++..+.+.++...|.+.+..+.-. .|+..+.. +|.+..+.- -+..
T Consensus 282 ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr 359 (549)
T PF07079_consen 282 CEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLR 359 (549)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHH
Confidence 44333222110 12356777888888888888888877766554 23322221 222222211 1223
Q ss_pred HHHHHHHhcCCCChh-----HHHH-HHHHHHhcCC-hHHHHHHHHHHHHcCCCC-CHHH----HHHHHHHHhc---cCCH
Q 037713 291 AAKDIFGRMRRKDVV-----SWTS-IIVGTAQHGQ-AEETLALYDEMVSAGVKP-NEVT----FVGLIYACSH---VGLV 355 (610)
Q Consensus 291 ~A~~~~~~~~~~~~~-----~~~~-li~~~~~~g~-~~~A~~l~~~m~~~g~~p-~~~t----~~~ll~a~~~---~g~~ 355 (610)
+=+.+|+.+...|+. .|-. -..-+.+.|. -++|+++++...+- .| |... +..+=.+|.+ ...+
T Consensus 360 ~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~ 437 (549)
T PF07079_consen 360 DYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAI 437 (549)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 334455555443321 1211 1233555666 78899999988763 33 3222 2222233332 2234
Q ss_pred HHHHHHHHHhHHhcCCCCC----HHHHHHHHHH--HHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCchhHHHH
Q 037713 356 GKGRKLFKSMIEDYGITPS----LQHYTCLLDL--LSRSGHLDEAENLIKAM-PFEPDEPTWAALLSACKHHRNTEMGTR 428 (610)
Q Consensus 356 ~~a~~~~~~~~~~~~~~~~----~~~~~~li~~--~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~ 428 (610)
.+-..+-+- ++..|++|- ...-|.|.++ +...|++.++.-.-.-. .+.|++.+|..+.-.....+++++|..
T Consensus 438 ~rLlkLe~f-i~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~ 516 (549)
T PF07079_consen 438 PRLLKLEDF-ITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWE 516 (549)
T ss_pred HHHHHHHHH-HHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 444444333 344588773 4566777665 45778888876543333 678999999888888888999999999
Q ss_pred HHHHH
Q 037713 429 VANHL 433 (610)
Q Consensus 429 ~~~~~ 433 (610)
++..+
T Consensus 517 ~l~~L 521 (549)
T PF07079_consen 517 YLQKL 521 (549)
T ss_pred HHHhC
Confidence 88754
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=88.27 E-value=1.1 Score=27.43 Aligned_cols=26 Identities=12% Similarity=-0.106 Sum_probs=18.0
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHH
Q 037713 204 LWTALVSGLVQSRNEIDAFYSFIEMR 229 (610)
Q Consensus 204 ~~~~li~~~~~~g~~~~A~~~~~~m~ 229 (610)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36667777777777777777777744
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=88.19 E-value=25 Score=33.80 Aligned_cols=83 Identities=12% Similarity=0.035 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 037713 220 DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRM 299 (610)
Q Consensus 220 ~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 299 (610)
++...+..+... +|..+-...+.+..+.++.. +...+-...+.+ + +....+.+..+.|+. +|...+..+
T Consensus 192 ~~~~~L~~~L~D----~~~~VR~~A~~aLg~~~~~~-av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l 260 (280)
T PRK09687 192 DIREAFVAMLQD----KNEEIRIEAIIGLALRKDKR-VLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTL 260 (280)
T ss_pred HHHHHHHHHhcC----CChHHHHHHHHHHHccCChh-HHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHH
Confidence 444444444422 45555555555555555532 222222222221 1 223455556666664 455555555
Q ss_pred CC--CChhHHHHHHHH
Q 037713 300 RR--KDVVSWTSIIVG 313 (610)
Q Consensus 300 ~~--~~~~~~~~li~~ 313 (610)
.+ +|...-...+.+
T Consensus 261 ~~~~~d~~v~~~a~~a 276 (280)
T PRK09687 261 LYKFDDNEIITKAIDK 276 (280)
T ss_pred HhhCCChhHHHHHHHH
Confidence 42 344443333433
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=88.13 E-value=6.8 Score=34.72 Aligned_cols=95 Identities=15% Similarity=0.102 Sum_probs=67.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCH------H
Q 037713 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE--VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSL------Q 376 (610)
Q Consensus 305 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~------~ 376 (610)
..+..+..-|.+.|+.++|++.|.++.+....|.. ..+..++..+...+++..+.....++........|. .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 45677888999999999999999999887665554 346778888888999998888887775532111122 2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC
Q 037713 377 HYTCLLDLLSRSGHLDEAENLIKAM 401 (610)
Q Consensus 377 ~~~~li~~~~~~g~~~~A~~~~~~m 401 (610)
.|..|. +...+++.+|.+.|-+.
T Consensus 117 ~~~gL~--~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLA--NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHH--HHHhchHHHHHHHHHcc
Confidence 333333 23578999998888776
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=88.06 E-value=0.64 Score=28.51 Aligned_cols=25 Identities=12% Similarity=0.073 Sum_probs=13.2
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHh
Q 037713 410 WAALLSACKHHRNTEMGTRVANHLL 434 (610)
Q Consensus 410 ~~~ll~~~~~~g~~~~a~~~~~~~~ 434 (610)
|..|...|...|++++|+.++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555533
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.88 E-value=22 Score=32.78 Aligned_cols=52 Identities=19% Similarity=0.243 Sum_probs=24.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC---C--C-CCCHHHHHHHHHHHHhcCchhHHHHHH
Q 037713 378 YTCLLDLLSRSGHLDEAENLIKAM---P--F-EPDEPTWAALLSACKHHRNTEMGTRVA 430 (610)
Q Consensus 378 ~~~li~~~~~~g~~~~A~~~~~~m---~--~-~p~~~~~~~ll~~~~~~g~~~~a~~~~ 430 (610)
|-..|-.|.-..++..|...++.- | . .-+..+...||.+|- .|+.+++..++
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHHH
Confidence 333444444455666666666552 1 0 113444555555542 34455544443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=87.77 E-value=57 Score=37.34 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=15.4
Q ss_pred HHHHHHHhhcCC--ChHHHHHHHccCC
Q 037713 41 PNTLIDAYGKCD--LVQYAHHLLEEMP 65 (610)
Q Consensus 41 ~~~li~~~~~~g--~~~~A~~~f~~m~ 65 (610)
.-.+|..|.+.+ .++.|+....+..
T Consensus 793 ~~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 793 NLFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred hHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 446677777766 5666666555444
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.59 E-value=3.7 Score=38.99 Aligned_cols=49 Identities=20% Similarity=0.267 Sum_probs=26.8
Q ss_pred CchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHh
Q 037713 84 LPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVL 133 (610)
Q Consensus 84 ~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 133 (610)
++++++.++..=.+.| +-||.++++.+++.+.+.++...|.++...|+.
T Consensus 115 ~pq~~i~~l~npIqYG-iF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYG-IFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred ChHHHHHHHhCcchhc-cccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4445555555555555 555555555555555555555555555544443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=87.49 E-value=32 Score=34.22 Aligned_cols=65 Identities=12% Similarity=0.193 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCC----CCCcchHhHHHHhhhhcchhHHHHHHHHHhh
Q 037713 405 PDEPTWAALLSACKHHRNTEMGTRVANHLLSLKP----EDPSSYILLSNVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 405 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 469 (610)
....+|..+...+.+.|+++.|...+.++.+.++ ..+.....-+......|+..+|...++...+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3467788999999999999999999999987652 2456667778889999999999998887766
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=87.34 E-value=15 Score=35.58 Aligned_cols=126 Identities=12% Similarity=0.161 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhc--c----ccHHHHHHHHHHHHHhCC---CCchhHHHHHHHHHHhcCC
Q 037713 218 EIDAFYSFIEMRREGVDIVDPLVLSSIVGACAN--F----AVLELGKQIHGLVIALGY---ESCLFISNAIVDMYAKCSD 288 (610)
Q Consensus 218 ~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~--~----~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~y~~~g~ 288 (610)
+++.+.+++.|.+.|++ -+..+|.+....... . .....+..+|+.|.+.-. .++-..+.+|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk-~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~ 154 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFK-RSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED 154 (297)
T ss_pred HHHHHHHHHHHHHhccC-ccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc
Confidence 34566788888888888 666777664444333 1 235678889999988642 2334445555433 3333
Q ss_pred ----HHHHHHHHHhcCC-----CChhHHHHHHHHHHh-cCC--hHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037713 289 ----IIAAKDIFGRMRR-----KDVVSWTSIIVGTAQ-HGQ--AEETLALYDEMVSAGVKPNEVTFVGLI 346 (610)
Q Consensus 289 ----~~~A~~~~~~~~~-----~~~~~~~~li~~~~~-~g~--~~~A~~l~~~m~~~g~~p~~~t~~~ll 346 (610)
.+.++.+|+.+.+ .|..-+.+-+-++.. ... ...+.++++.+.+.|+++....|..+.
T Consensus 155 ~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 155 VEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 2445566665543 233333333333332 222 457899999999999998887776554
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.84 E-value=25 Score=32.25 Aligned_cols=24 Identities=0% Similarity=0.016 Sum_probs=17.6
Q ss_pred HHhcCchhHHHHHHHHHhcCCCCC
Q 037713 417 CKHHRNTEMGTRVANHLLSLKPED 440 (610)
Q Consensus 417 ~~~~g~~~~a~~~~~~~~~~~p~~ 440 (610)
-...+++.+|+.+|+++.....++
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Confidence 456688999999999887554443
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=86.64 E-value=53 Score=35.83 Aligned_cols=151 Identities=16% Similarity=0.077 Sum_probs=77.3
Q ss_pred ccCChHHHHHHHHHHHH----hCCCCCCc-hHHHHHHHhhcCCChHHHHHHHccCCC----CCcchHHHHHH-----HHH
Q 037713 15 RHQIALTVKTLHAQIIK----LGLHQYGP-LPNTLIDAYGKCDLVQYAHHLLEEMPQ----RDHVSWASILT-----AYN 80 (610)
Q Consensus 15 ~~~~~~~~~~~~~~~~~----~g~~~~~~-~~~~li~~~~~~g~~~~A~~~f~~m~~----~~~~~~~~li~-----~~~ 80 (610)
...+++.|+..++.... .++..-.+ ....++..|.+.+... |.+..++..+ .....|....+ .+.
T Consensus 72 eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~ 150 (608)
T PF10345_consen 72 ETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLAL 150 (608)
T ss_pred HcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 44566667766665532 22222112 2234456666555544 7766665432 11222333322 222
Q ss_pred cCCCchHHHHHHHHhHHCCC--CCCChhhHHHHHHHHh--ccCCcHHHHHHHHHHHhcCC---------CCChhHHHHHH
Q 037713 81 QANLPQKTISIFSTMLALDK--LQPDHFVFASLVKACG--SLGATRLGKQVHACFVLSPF---------CDDDVVKSSLV 147 (610)
Q Consensus 81 ~~g~~~~A~~~~~~m~~~~~--~~pd~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~---------~~~~~~~~~li 147 (610)
..+++..|++.++.+..... ..|-...+..++.+.. +.+..+.+.+..+.+..... .|-..++..++
T Consensus 151 ~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll 230 (608)
T PF10345_consen 151 QHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLL 230 (608)
T ss_pred hcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHH
Confidence 33688888888877755321 2344555555665543 44555666666665533211 23445666666
Q ss_pred HHH--HhCCChHHHHHHHHhc
Q 037713 148 DMY--AKCGLPNNARAVFDSI 166 (610)
Q Consensus 148 ~~~--~~~g~~~~A~~~~~~m 166 (610)
+.+ ...|+++.+...++.+
T Consensus 231 ~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 231 DLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 643 4567766666665544
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=86.55 E-value=34 Score=33.53 Aligned_cols=125 Identities=10% Similarity=0.037 Sum_probs=60.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH---HhcCCCCCHHHHHHH
Q 037713 310 IIVGTAQHGQAEETLALYDEMVSAG-----VKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI---EDYGITPSLQHYTCL 381 (610)
Q Consensus 310 li~~~~~~g~~~~A~~l~~~m~~~g-----~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~---~~~~~~~~~~~~~~l 381 (610)
|..++.-.+.++++++.|+...+.- .......+..|-+-|.+..++++|.-+..+.. ..+++..-..-|.++
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 4444444555566666665544311 11112345555566666666666554443322 222333222223222
Q ss_pred -----HHHHHhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHh
Q 037713 382 -----LDLLSRSGHLDEAENLIKAM-------PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLL 434 (610)
Q Consensus 382 -----i~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 434 (610)
.-+|...|.+.+|.+.-++. +.+| -......+...|...|+.|.|..-|+.+.
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 23344555555554444433 3222 13334456666777777777777776654
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=86.34 E-value=6.8 Score=33.63 Aligned_cols=89 Identities=19% Similarity=0.178 Sum_probs=54.5
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCchh
Q 037713 347 YACSHVGLVGKGRKLFKSMIEDYGITPSL-QHYTCLLDLLSRSGHLDEAENLIKAM-PFEPDEPTWAALLSACKHHRNTE 424 (610)
Q Consensus 347 ~a~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~ 424 (610)
..-...++.+++..++..+.- +.|.. ..-..-...+.+.|++.+|..+|+++ .-.|....-..|+..|.....-.
T Consensus 18 ~~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 344467788888888887754 44543 22223334466788888888888888 33344455556666666555544
Q ss_pred HHHHHHHHHhcCCC
Q 037713 425 MGTRVANHLLSLKP 438 (610)
Q Consensus 425 ~a~~~~~~~~~~~p 438 (610)
.=....+++++.++
T Consensus 95 ~Wr~~A~evle~~~ 108 (160)
T PF09613_consen 95 SWRRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHHHhcCC
Confidence 45555566666665
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=85.79 E-value=5.8 Score=30.55 Aligned_cols=63 Identities=11% Similarity=0.199 Sum_probs=49.4
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 037713 319 QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLD 383 (610)
Q Consensus 319 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 383 (610)
+.-++.+-+..+....+.|+.....+.++||-+.+++..|.++|+..+.+ ...+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K--~~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK--CGAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccCchhhHHHHHH
Confidence 34466777777777788999999999999999999999999999988764 3334556776654
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.72 E-value=8.5 Score=36.71 Aligned_cols=97 Identities=12% Similarity=0.247 Sum_probs=72.2
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-C--------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 037713 268 GYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR-K--------DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN 338 (610)
Q Consensus 268 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 338 (610)
|.+....+...++..-....+++++...+-++.. | ..++|-.++. .-++++++.++..=++.|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhccccc
Confidence 4555555666666666667788888888777763 2 2334433332 3467789999888889999999
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 037713 339 EVTFVGLIYACSHVGLVGKGRKLFKSMIED 368 (610)
Q Consensus 339 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 368 (610)
..|++.++..+.+.+++.+|.++.-.|+..
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999999999888777664
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=85.23 E-value=23 Score=30.44 Aligned_cols=51 Identities=16% Similarity=0.176 Sum_probs=29.3
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHhccCCHHHHHHHHHHhHH
Q 037713 315 AQHGQAEETLALYDEMVSAGVKPNEVTFVGL-IYACSHVGLVGKGRKLFKSMIE 367 (610)
Q Consensus 315 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~~~~ 367 (610)
.+.++.+++..++..|.-. +|.......+ ..-+...|++.+|.++|+.+..
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 3466777777777777653 4443322211 1234566777777777777654
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=85.05 E-value=6.8 Score=30.54 Aligned_cols=61 Identities=13% Similarity=0.239 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 037713 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDL 384 (610)
Q Consensus 322 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 384 (610)
+..+-+..+....+.|+.....+.+.||.+.+++..|.++|+.++.+.+ +....|..+++-
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lqE 88 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHHH
Confidence 5566666677777899999999999999999999999999999887644 333377777653
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=84.71 E-value=1.5 Score=41.94 Aligned_cols=111 Identities=12% Similarity=0.080 Sum_probs=77.6
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCch
Q 037713 347 YACSHVGLVGKGRKLFKSMIEDYGITP-SLQHYTCLLDLLSRSGHLDEAENLIKAM-PFE-PDEPTWAALLSACKHHRNT 423 (610)
Q Consensus 347 ~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~ 423 (610)
+-|.+.|.+++|+..|...+. +.| |.++|..-..+|.+..++..|+.-.... .+. .-...|..-+.+-...|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 458899999999999988765 445 7888888889999999998887655443 111 1123344444555567888
Q ss_pred hHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHH
Q 037713 424 EMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVR 464 (610)
Q Consensus 424 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 464 (610)
++|.+-++.++++.|.+. .|-..|++.....++.-+.
T Consensus 182 ~EAKkD~E~vL~LEP~~~----ELkK~~a~i~Sl~E~~I~~ 218 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNI----ELKKSLARINSLRERKIAT 218 (536)
T ss_pred HHHHHhHHHHHhhCcccH----HHHHHHHHhcchHhhhHHh
Confidence 999999999999999853 4455555555555554443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.57 E-value=3.4 Score=39.23 Aligned_cols=60 Identities=15% Similarity=0.182 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhh
Q 037713 410 WAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 410 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 469 (610)
+..++..+...|+.+.+...++++++.+|-+...|..++.+|.+.|+...|...++.+.+
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 334444445555555555555555555555555555555555555555555555555543
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=84.35 E-value=1.5 Score=26.45 Aligned_cols=31 Identities=13% Similarity=0.068 Sum_probs=18.8
Q ss_pred HHHHhcCCCCChhHHHHHHHHHHhCCChHHHH
Q 037713 129 ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNAR 160 (610)
Q Consensus 129 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 160 (610)
++.++.. |.+...|+.|..+|...|++++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3344443 555666777777777777766664
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=84.05 E-value=6.5 Score=33.16 Aligned_cols=52 Identities=6% Similarity=0.065 Sum_probs=31.8
Q ss_pred cCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhCC
Q 037713 420 HRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVME 471 (610)
Q Consensus 420 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 471 (610)
.++.+.++.++..+.-+.|+.+..-..-+.++...|+|++|.++++...+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 5566666666666666666666655566666666666666666666655433
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=83.70 E-value=21 Score=36.25 Aligned_cols=83 Identities=14% Similarity=0.085 Sum_probs=35.2
Q ss_pred HhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHH
Q 037713 386 SRSGHLDEAENLIKAM--PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKV 463 (610)
Q Consensus 386 ~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 463 (610)
...|.++.+.+.+... -+.....+...++......|+.++|....+.|+.-+-.+++.....+..-...|-++++...
T Consensus 334 ~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~ 413 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHY 413 (831)
T ss_pred HHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHH
Confidence 3344444444444433 11223334444444444445555555555444443333333333333333333444444444
Q ss_pred HHHHh
Q 037713 464 RKLMS 468 (610)
Q Consensus 464 ~~~m~ 468 (610)
++..-
T Consensus 414 wk~~~ 418 (831)
T PRK15180 414 WKRVL 418 (831)
T ss_pred HHHHh
Confidence 44443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=83.30 E-value=1.6 Score=26.05 Aligned_cols=28 Identities=14% Similarity=0.204 Sum_probs=21.2
Q ss_pred chHHHHHHHHHcCCCchHHHHHHHHhHH
Q 037713 70 VSWASILTAYNQANLPQKTISIFSTMLA 97 (610)
Q Consensus 70 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 97 (610)
.+|..+...|...|++++|+..|++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3577777888888888888888888777
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=81.64 E-value=15 Score=32.13 Aligned_cols=45 Identities=9% Similarity=0.073 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhCCCcc
Q 037713 423 TEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKK 474 (610)
Q Consensus 423 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 474 (610)
+++|...|+++...+|++ ..|..-..+. ..|-+++.++.+.+...
T Consensus 96 F~kA~~~FqkAv~~~P~n-e~Y~ksLe~~------~kap~lh~e~~~~~~~~ 140 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNN-ELYRKSLEMA------AKAPELHMEIHKQGLGQ 140 (186)
T ss_dssp HHHHHHHHHHHHHH-TT--HHHHHHHHHH------HTHHHHHHHHHHSSS--
T ss_pred HHHHHHHHHHHHhcCCCc-HHHHHHHHHH------HhhHHHHHHHHHHHhhh
Confidence 677888888888899987 5666555554 35777777777666543
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.53 E-value=87 Score=34.20 Aligned_cols=167 Identities=12% Similarity=0.117 Sum_probs=92.2
Q ss_pred HhccCCcHHHHHHHHHHHhcCCCC---ChhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHH
Q 037713 115 CGSLGATRLGKQVHACFVLSPFCD---DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAM 191 (610)
Q Consensus 115 ~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~ 191 (610)
+.+.+.+++|..+-+... |..+ -..++...++-+.-.|++++|-...-.|...+..-|.-.+..+...++.....
T Consensus 366 ll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia 443 (846)
T KOG2066|consen 366 LLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIA 443 (846)
T ss_pred HHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhh
Confidence 334455555555544332 2233 23466777788888888888888888888888888877777777777666544
Q ss_pred HHHhhCCC-CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCC
Q 037713 192 EIFEQAPV-RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYE 270 (610)
Q Consensus 192 ~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 270 (610)
.+.-.-+. .+...|..++..+.. .+ ..-|.+.++.= |++...-..++++- . .+..+. .
T Consensus 444 ~~lPt~~~rL~p~vYemvLve~L~-~~----~~~F~e~i~~W--p~~Lys~l~iisa~--~----------~q~~q~--S 502 (846)
T KOG2066|consen 444 PYLPTGPPRLKPLVYEMVLVEFLA-SD----VKGFLELIKEW--PGHLYSVLTIISAT--E----------PQIKQN--S 502 (846)
T ss_pred ccCCCCCcccCchHHHHHHHHHHH-HH----HHHHHHHHHhC--ChhhhhhhHHHhhc--c----------hHHHhh--c
Confidence 44333222 244567666666655 11 12222222221 12222222222211 1 111111 1
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh
Q 037713 271 SCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDV 304 (610)
Q Consensus 271 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~ 304 (610)
.+..+-..|+..|...+++++|.+.+-...++++
T Consensus 503 e~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 503 ESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred cchhHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 1222334488889999999999998888776543
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=80.30 E-value=2.6 Score=24.74 Aligned_cols=27 Identities=11% Similarity=0.129 Sum_probs=15.5
Q ss_pred HHHHHHhcCchhHHHHHHHHHhcCCCC
Q 037713 413 LLSACKHHRNTEMGTRVANHLLSLKPE 439 (610)
Q Consensus 413 ll~~~~~~g~~~~a~~~~~~~~~~~p~ 439 (610)
+..++.+.|+.++|.+.++++++..|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 344455556666666666666655554
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.14 E-value=46 Score=30.21 Aligned_cols=172 Identities=15% Similarity=0.104 Sum_probs=79.0
Q ss_pred CChHHHHHHHccCC--CCC-cchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHH--HhccCCcHHHHH
Q 037713 52 DLVQYAHHLLEEMP--QRD-HVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKA--CGSLGATRLGKQ 126 (610)
Q Consensus 52 g~~~~A~~~f~~m~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~--~~~~~~~~~a~~ 126 (610)
|-.+.|+-=|.+.. .|+ +..||-|.--+...|+++.|.+.|+...+.+ |. .-|..+=++ +--.|++..|.+
T Consensus 79 GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD---p~-y~Ya~lNRgi~~YY~gR~~LAq~ 154 (297)
T COG4785 79 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD---PT-YNYAHLNRGIALYYGGRYKLAQD 154 (297)
T ss_pred hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccC---Cc-chHHHhccceeeeecCchHhhHH
Confidence 44444444444322 333 3457777777778888888888888887743 32 112222221 223467777776
Q ss_pred HHHHHHhcCCCCCh--hHHHHHHHHHHhCCChHHHHH-HHHhcCCCChhhHHHHHHHHHh-cCCHHHHHHHHhhCCCCC-
Q 037713 127 VHACFVLSPFCDDD--VVKSSLVDMYAKCGLPNNARA-VFDSIKLKNSVSWTAMLSAYAR-SGRKKDAMEIFEQAPVRN- 201 (610)
Q Consensus 127 ~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~-~~~~m~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~- 201 (610)
-+...-+.+ +.|+ ..|--+.. ..-++.+|.. +.++....|..-|..-|-.|.- .=..+.+.+-...-...+
T Consensus 155 d~~~fYQ~D-~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~ 230 (297)
T COG4785 155 DLLAFYQDD-PNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEETLMERLKADATDNT 230 (297)
T ss_pred HHHHHHhcC-CCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchH
Confidence 665555443 2222 22222211 1223444443 3344444455555554433321 111122111111111111
Q ss_pred ------hhhHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 037713 202 ------LFLWTALVSGLVQSRNEIDAFYSFIEMRRE 231 (610)
Q Consensus 202 ------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 231 (610)
..+|--+..-|...|+.++|..+|+-....
T Consensus 231 ~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 231 SLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 134444555555556666666665555443
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=80.01 E-value=97 Score=33.83 Aligned_cols=182 Identities=10% Similarity=0.097 Sum_probs=98.3
Q ss_pred chhhHHHhhhhhhccCChHHHHHHHHHHHH-hCCCCCCc-----hHHHHHHHhhcCCChHHHHHHHccCC----CCCcc-
Q 037713 2 QISHYLHRLRVCARHQIALTVKTLHAQIIK-LGLHQYGP-----LPNTLIDAYGKCDLVQYAHHLLEEMP----QRDHV- 70 (610)
Q Consensus 2 ~~~~y~~ll~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~-----~~~~li~~~~~~g~~~~A~~~f~~m~----~~~~~- 70 (610)
++.+|..+|.. |.+.+..+.+ ..++|... -+..++ +....+++.|+..+++.. +++..
T Consensus 29 ~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL--~~eT~n~~~Ae~~L~k~~~l~~~~~~~d 97 (608)
T PF10345_consen 29 QLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASIL--LEETENLDLAETYLEKAILLCERHRLTD 97 (608)
T ss_pred hHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 35667777654 4455555553 33333211 133333 345667888988887653 22211
Q ss_pred ----hHHHHHHHHHcCCCchHHHHHHHHhHHCCCC---CCChhhHHHH-HHHHhccCCcHHHHHHHHHHHhcC---CCCC
Q 037713 71 ----SWASILTAYNQANLPQKTISIFSTMLALDKL---QPDHFVFASL-VKACGSLGATRLGKQVHACFVLSP---FCDD 139 (610)
Q Consensus 71 ----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~pd~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~g---~~~~ 139 (610)
+-..++..+.+.+... |....++..+.-.- .+=...|..+ +..+...++...|.+.++.+.... ..|-
T Consensus 98 ~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~ 176 (608)
T PF10345_consen 98 LKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPA 176 (608)
T ss_pred HHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHH
Confidence 2234556666666555 88888887653201 1122223333 222333379999999988776543 2455
Q ss_pred hhHHHHHHHHHH--hCCChHHHHHHHHhcC----C---------CChhhHHHHHHHH--HhcCCHHHHHHHHh
Q 037713 140 DVVKSSLVDMYA--KCGLPNNARAVFDSIK----L---------KNSVSWTAMLSAY--ARSGRKKDAMEIFE 195 (610)
Q Consensus 140 ~~~~~~li~~~~--~~g~~~~A~~~~~~m~----~---------~~~~~~~~li~~~--~~~g~~~~A~~~~~ 195 (610)
..++-.++.+.. +.+..+++.+.++++. . |-..+|..+++.+ ...|+++.+...++
T Consensus 177 ~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~ 249 (608)
T PF10345_consen 177 VFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLK 249 (608)
T ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555555555443 4566667777666552 1 1345666666544 56677666665544
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 71.4 bits (174), Expect = 5e-13
Identities = 97/644 (15%), Positives = 214/644 (33%), Gaps = 163/644 (25%)
Query: 55 QYAHHLLEEMPQRDHVSWASILTAYNQA--------NLPQKTISIFSTMLALDKL--QPD 104
+ HH+ E + + + IL+ + A ++ SI S +D + D
Sbjct: 2 HHHHHMDFETGEHQY-QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKE-EIDHIIMSKD 59
Query: 105 -----HFVFASLVKACGSLGATRLGKQVHAC---FVLSPFCDDDVVKSSLVDMYAKC--G 154
+F +L+ + ++V F++SP + S + MY +
Sbjct: 60 AVSGTLRLFWTLLSK-QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118
Query: 155 LPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEI----FEQAPVRNLFLW----- 205
L N+ + VF K +VS R + +++ E P +N+ +
Sbjct: 119 LYNDNQ-VFA----KYNVS------------RLQPYLKLRQALLELRPAKNVLIDGVLGS 161
Query: 206 --TALV-----SGLVQSRNEIDAFY-SFIEMRREGVDI---------VDPLVLSSIVGAC 248
T + S VQ + + F+ + + +DP S +
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 249 ANFAVLELGKQ-IHGLVIALGYESCLFI-----SNAIVDMYA-KCSDIIAAKDIFGRMRR 301
+ + + L+ + YE+CL + + + + C ++ +
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK-QVTDF 280
Query: 302 KDVVSWTSIIVGTAQHG-QAEETLALYDEMVSAGVK--PNEVTFVGLIYACS----HVGL 354
+ T I + +E +L + + + P E + + +
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE--------VLTTNPRRLSI 332
Query: 355 VGKGRKLFKSMIEDYGITPSLQHYTC--LLDLLSRS-GHLDEAE--NLIKAMP-FEPDEP 408
+ + + + +++ +H C L ++ S L+ AE + + F P
Sbjct: 333 IAESIRDGLATWDNW------KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386
Query: 409 TWAALLSA--CKHHRNTEMGTRVANHL--LSL---KPEDPSSYI------LLSNVYASAA 455
LLS ++ M V N L SL +P++ + I L + A
Sbjct: 387 IPTILLSLIWFDVIKSDVM--VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444
Query: 456 MWQHVSKVRKLMSVMEVKK-----------EPGYSYIEFGKGSHIFYAGETSHPLK---- 500
+ H R ++ + K Y Y SHI + H LK
Sbjct: 445 L--H----RSIVDHYNIPKTFDSDDLIPPYLDQYFY------SHIGH-----H-LKNIEH 486
Query: 501 DEIFELLTE-------LDAEMKRRGYVPD-TSSVLHDMEQKEKERQLFWHSERLAVAY-G 551
E L L+ +++ + + S+L+ ++Q + + ++ Y
Sbjct: 487 PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDP---KYER 543
Query: 552 LLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATR 595
L+ ++ + ++ +NL ++ I+ + + E + +A +
Sbjct: 544 LVNAILDFLPKIEENLICSKYTDLL--RIALMAEDEAIFEEAHK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.3 bits (127), Expect = 2e-07
Identities = 71/496 (14%), Positives = 151/496 (30%), Gaps = 148/496 (29%)
Query: 188 KDAMEIFEQAPVRNL-----------FLWTALVSGLVQSRNEIDAFYS-FIEMRREGVDI 235
KD + +FE A V N L + ++ S++ + F + + ++
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM 78
Query: 236 VDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDI 295
V V V+ + Y+ F+ + I + +
Sbjct: 79 VQKFV---------------------EEVLRINYK---FLMSPI---KTEQRQPSMMTRM 111
Query: 296 FGRMRRKDVVSWTSIIVGTAQHGQAEETL-----ALYDEMVSAGVKPNEVTFVGLIYACS 350
+ R + + V + + AL + ++P + V +
Sbjct: 112 YIEQRDR---LYNDNQVFAKYNVSRLQPYLKLRQALLE------LRPAK--NVLI----- 155
Query: 351 HVGLVGKGRK--LFKSMIEDYGITPSLQ---HYTCLLDLLSRSGHLDEAENLIKAM---- 401
G++G G K + + Y + + + L+L + + E +++ +
Sbjct: 156 D-GVLGSG-KTWVALDVCLSYKVQCKMDFKIFW---LNL----KNCNSPETVLEMLQKLL 206
Query: 402 -PFEPDEPTWAALLSACKHHRNTEMGTRVA----NHLLSLKPEDPSSYILLSNVYASAAM 456
+P+ S H N ++ LL KP + ++L NV +A
Sbjct: 207 YQIDPN------WTSRSDHSSNIKLRIHSIQAELRRLLKSKPY-ENCLLVLLNVQ-NAKA 258
Query: 457 WQHVS-KVRKLM-----SVMEVKKEPGYSYIEFGKGSHIFYAGET--------SHPLKD- 501
W + + L+ V + ++I S E +D
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318
Query: 502 -----EIFELLTELDAEMKRRGYVPDT----------------SSVLHDMEQKEKERQLF 540
+ AE R G T S L+ +E E R++F
Sbjct: 319 PREVLTTNPRRLSIIAESIRDG--LATWDNWKHVNCDKLTTIIESSLNVLEPAE-YRKMF 375
Query: 541 WHSERLAVAYGLLKSV--PGTVLRVV-KNLRVCGDCHIVMKMISRITKREIVVRDA---- 593
+RL+V S P +L ++ ++ VM +++++ K +V +
Sbjct: 376 ---DRLSV---FPPSAHIPTILLSLIWFDV----IKSDVMVVVNKLHKYSLVEKQPKEST 425
Query: 594 TRYHH-FKDGKCSCND 608
+ + K +
Sbjct: 426 ISIPSIYLELKVKLEN 441
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 61.0 bits (146), Expect = 8e-10
Identities = 16/140 (11%), Positives = 41/140 (29%), Gaps = 7/140 (5%)
Query: 277 NAIVDMYAKCSDIIAAKDIFGRMRRK-------DVVSWTSIIVGTAQHGQAEETLALYDE 329
A + A + + + + ++++G A+ G +E + +
Sbjct: 131 LAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFM 190
Query: 330 MVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSG 389
+ AG+ P+ +++ + + + G+ LL R+
Sbjct: 191 VKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT 250
Query: 390 HLDEAENLIKAMPFEPDEPT 409
L + P P
Sbjct: 251 VLKAVHKVKPTFSLPPQLPP 270
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 49.0 bits (115), Expect = 4e-06
Identities = 33/257 (12%), Positives = 70/257 (27%), Gaps = 8/257 (3%)
Query: 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF 362
++++ + T Q A L ++ + ++ + G + +
Sbjct: 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVL 188
Query: 363 KSMIEDYGITPSLQHYTCLLDLLSRSGHLDEA-ENLIKAMPFEPDEPTWAALLSACKHHR 421
+ + G+TP L Y L + R E ++ M L +
Sbjct: 189 FMVKDA-GLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMS-----QEGLKLQALFTAVL 242
Query: 422 NTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYI 481
+E + S L ++ + + V +S ++
Sbjct: 243 LSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQC 302
Query: 482 EFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDT-SSVLHDMEQKEKERQLF 540
F K H+ A ++ E+ K + D L ++ K R
Sbjct: 303 LFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQWEKALCRALRETKNRLER 362
Query: 541 WHSERLAVAYGLLKSVP 557
E Y L +
Sbjct: 363 EVYEGRFSLYPFLCLLD 379
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 42.9 bits (99), Expect = 3e-04
Identities = 18/135 (13%), Positives = 37/135 (27%), Gaps = 9/135 (6%)
Query: 42 NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL-------PQKTISIFST 94
D + AHHLL + L YN L ++ + +
Sbjct: 131 LAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFM 190
Query: 95 MLALDKLQPDHFVFASLVKACGSLG-ATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKC 153
+ L PD +A+ ++ G ++ + + L+ +
Sbjct: 191 VKD-AGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249
Query: 154 GLPNNARAVFDSIKL 168
+ V + L
Sbjct: 250 TVLKAVHKVKPTFSL 264
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 610 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.9 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.87 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.84 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.83 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.81 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.8 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.8 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.8 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.79 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.78 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.77 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.77 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.77 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.77 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.76 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.76 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.76 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.75 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.73 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.72 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.71 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.7 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.69 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.68 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.68 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.67 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.6 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.6 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.59 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.58 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.56 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.54 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.52 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.51 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.51 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.5 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.5 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.49 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.49 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.49 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.48 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.48 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.48 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.48 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.48 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.47 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.47 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.46 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.46 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.45 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.45 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.41 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.41 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.4 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.4 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.39 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.36 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.34 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.32 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.31 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.29 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.29 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.29 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.28 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.26 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.25 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.25 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.25 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.24 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.19 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.19 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.17 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.12 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.08 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.07 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.05 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.03 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.01 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.99 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.98 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.96 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.96 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.95 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.95 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.93 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.92 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.9 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.89 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.82 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.8 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.8 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.79 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.78 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.75 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.73 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.72 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.7 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.69 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.69 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.67 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.66 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.65 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.65 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.65 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.62 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.61 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.6 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.6 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.59 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.59 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.59 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.58 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.57 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.56 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.55 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.53 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.53 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.52 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.5 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.5 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.49 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.48 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.44 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.42 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.38 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.37 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.36 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.36 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.36 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.33 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.33 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.32 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.31 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.3 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.3 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.3 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.3 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.3 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.3 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.28 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.27 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.25 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.24 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.24 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.24 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.22 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.22 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.22 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.21 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.21 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.2 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.2 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.2 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.17 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.16 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.16 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.15 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.13 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.11 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.08 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.04 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.04 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.03 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.02 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.01 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.0 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.0 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.0 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.99 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.99 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.96 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.93 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.93 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.92 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.89 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.88 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.88 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.87 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.86 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.85 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.79 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.78 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.78 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.7 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.57 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.57 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.51 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.48 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.35 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.33 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.26 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.26 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.2 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.19 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.16 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.08 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.08 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.01 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.95 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.92 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.88 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.7 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.66 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.59 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.58 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.53 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.45 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.43 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.35 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.29 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 95.93 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.92 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.77 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.77 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.68 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 95.49 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.42 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.4 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.39 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.33 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 93.84 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 93.5 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 92.79 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 92.54 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 92.41 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.29 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 92.18 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 90.38 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 89.74 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 89.73 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 89.36 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 89.31 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 88.91 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 88.56 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 88.14 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 87.13 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 87.07 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 86.62 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 86.26 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 86.02 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 84.95 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 83.34 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 82.95 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 82.07 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 81.68 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 81.59 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 81.36 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 81.35 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 80.52 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 80.07 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-39 Score=351.87 Aligned_cols=426 Identities=9% Similarity=-0.031 Sum_probs=344.7
Q ss_pred CCCchHHHHHHHhhcCCChHHHHHHHccCC--CCCcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHH
Q 037713 36 QYGPLPNTLIDAYGKCDLVQYAHHLLEEMP--QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVK 113 (610)
Q Consensus 36 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~ 113 (610)
+++..++.++..|.+.|++++|..+|++|. .|+..+|+.++.+|.+.|++++|+.+|+++.. .+++..+++.++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l~~ 158 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL---YNRSSACRYLAAF 158 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG---GGTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc---cccchhHHHHHHH
Confidence 345556666666666666666666666654 34555666666666666666666666666544 3456666666666
Q ss_pred HHhccCCcHHHHHHHHHHHhc---------------CCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCC---Chh---
Q 037713 114 ACGSLGATRLGKQVHACFVLS---------------PFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK---NSV--- 172 (610)
Q Consensus 114 ~~~~~~~~~~a~~~~~~~~~~---------------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~--- 172 (610)
++.+.|++++|..+|+++... |.+++..+++.++.+|.+.|++++|.++|++|... +..
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 238 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFD 238 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHH
Confidence 666666666666666632211 23445666666666666666666666666666422 122
Q ss_pred -----------------------------------hHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhC
Q 037713 173 -----------------------------------SWTAMLSAYARSGRKKDAMEIFEQAPV--RNLFLWTALVSGLVQS 215 (610)
Q Consensus 173 -----------------------------------~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~ 215 (610)
+|+.++..|.+.|++++|.++|+++.. ++..+|+.++.+|.+.
T Consensus 239 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~ 318 (597)
T 2xpi_A 239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVR 318 (597)
T ss_dssp HHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHT
T ss_pred HHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHh
Confidence 234446677789999999999999987 7899999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 037713 216 RNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDI 295 (610)
Q Consensus 216 g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 295 (610)
|++++|+++|++|.+.+. .+..++..++.++.+.|++++|..+++.+.+.. +.+..+++.++.+|.++|++++|.++
T Consensus 319 g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 395 (597)
T 2xpi_A 319 SRFIDVLAITTKILEIDP--YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRY 395 (597)
T ss_dssp TCHHHHHHHHHHHHHHCT--TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCc--ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHH
Confidence 999999999999998763 578889999999999999999999999999764 56788999999999999999999999
Q ss_pred HHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC
Q 037713 296 FGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGIT 372 (610)
Q Consensus 296 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 372 (610)
|+++.+ .+..+|+.++.+|.+.|++++|+++|++|.+.+ +++..+|..++.+|.+.|++++|.++|+++.+. .+
T Consensus 396 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~ 472 (597)
T 2xpi_A 396 FSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQ 472 (597)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CC
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 998853 468899999999999999999999999999864 347899999999999999999999999999874 34
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcc
Q 037713 373 PSLQHYTCLLDLLSRSGHLDEAENLIKAM-------PFEPD--EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSS 443 (610)
Q Consensus 373 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 443 (610)
.+..+|+.++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|++++|.+.++++++.+|+++.+
T Consensus 473 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 552 (597)
T 2xpi_A 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANV 552 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHH
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHH
Confidence 57899999999999999999999999988 45787 7899999999999999999999999999999999999
Q ss_pred hHhHHHHhhhhcchhHHHHHHHHHhhC
Q 037713 444 YILLSNVYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 444 ~~~l~~~~~~~g~~~~a~~~~~~m~~~ 470 (610)
|..++.+|.+.|++++|.+.++.+.+.
T Consensus 553 ~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 553 HTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 999999999999999999999998764
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-37 Score=336.03 Aligned_cols=444 Identities=9% Similarity=-0.033 Sum_probs=393.4
Q ss_pred hhhHHHhhhhhhccCChHHHHHHHHHHHHhCCCCCCchHHHHHHHhhcCCChHHHHHHHccC--CCCCcchHHHHHHHHH
Q 037713 3 ISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEM--PQRDHVSWASILTAYN 80 (610)
Q Consensus 3 ~~~y~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m--~~~~~~~~~~li~~~~ 80 (610)
+..|..++..+.+.|+++.|..++..++.. .|+..+++.++.+|.+.|++++|.++|+.+ ..++..+|+.++.+|.
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (597)
T 2xpi_A 84 EDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLV 161 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHH
Confidence 456888999999999999999999999865 467788999999999999999999999998 4678999999999999
Q ss_pred cCCCchHHHHHHHHhHHCC--------------CCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHH-
Q 037713 81 QANLPQKTISIFSTMLALD--------------KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSS- 145 (610)
Q Consensus 81 ~~g~~~~A~~~~~~m~~~~--------------~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~- 145 (610)
+.|++++|+++|+++.... +.+++..+|+.++.++.+.|++++|..+|+++++.+ +.+...+..
T Consensus 162 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l 240 (597)
T 2xpi_A 162 KLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQL 240 (597)
T ss_dssp HTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHH
Confidence 9999999999999543211 123468899999999999999999999999999875 333333333
Q ss_pred -------------------------------------HHHHHHhCCChHHHHHHHHhcCC--CChhhHHHHHHHHHhcCC
Q 037713 146 -------------------------------------LVDMYAKCGLPNNARAVFDSIKL--KNSVSWTAMLSAYARSGR 186 (610)
Q Consensus 146 -------------------------------------li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~ 186 (610)
++.+|.+.|++++|.++|+++.. ++..+|+.++.+|.+.|+
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 320 (597)
T 2xpi_A 241 VSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSR 320 (597)
T ss_dssp HHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTC
T ss_pred HHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcC
Confidence 35667788999999999999987 799999999999999999
Q ss_pred HHHHHHHHhhCC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHH
Q 037713 187 KKDAMEIFEQAP---VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGL 263 (610)
Q Consensus 187 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 263 (610)
+++|.++|+++. ..+..+|+.++.+|.+.|++++|.++|+++.+.. |.+..++..+...|.+.|++++|.++++.
T Consensus 321 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 398 (597)
T 2xpi_A 321 FIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH--PEKAVTWLAVGIYYLCVNKISEARRYFSK 398 (597)
T ss_dssp HHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 999999999875 3477899999999999999999999999999765 36899999999999999999999999999
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 037713 264 VIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEV 340 (610)
Q Consensus 264 ~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 340 (610)
+.+.. +.+..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|.++|++|.+.. +.+..
T Consensus 399 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 476 (597)
T 2xpi_A 399 SSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPL 476 (597)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChH
Confidence 99864 45688999999999999999999999998863 478999999999999999999999999999864 34789
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhc---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 037713 341 TFVGLIYACSHVGLVGKGRKLFKSMIEDY---GITPS--LQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAAL 413 (610)
Q Consensus 341 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l 413 (610)
+|+.++..|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.+.|+++ ...| +..+|..+
T Consensus 477 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 556 (597)
T 2xpi_A 477 LLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAI 556 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 99999999999999999999999997742 56777 789999999999999999999999998 3344 78999999
Q ss_pred HHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhh
Q 037713 414 LSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYAS 453 (610)
Q Consensus 414 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 453 (610)
..+|...|++++|.+.++++++++|+++.++..|+++|..
T Consensus 557 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 557 ALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999988853
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=9.1e-27 Score=237.52 Aligned_cols=369 Identities=11% Similarity=0.047 Sum_probs=287.1
Q ss_pred HHHHcCCCchHHHHHHHHhHHCCCCCCCh-hhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCC
Q 037713 77 TAYNQANLPQKTISIFSTMLALDKLQPDH-FVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGL 155 (610)
Q Consensus 77 ~~~~~~g~~~~A~~~~~~m~~~~~~~pd~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 155 (610)
..+.+.|++++|++.|.++.+. .|+. ..+..+...+...|++++|...+...++.. +.+..++..+...|.+.|+
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQ---EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 3455667777777777666663 3433 334444455566677777777776666654 5566667777777777777
Q ss_pred hHHHHHHHHhcC--CC-ChhhHHHHHHHHHhcCCHHHHHHHHhhCC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 037713 156 PNNARAVFDSIK--LK-NSVSWTAMLSAYARSGRKKDAMEIFEQAP--VR-NLFLWTALVSGLVQSRNEIDAFYSFIEMR 229 (610)
Q Consensus 156 ~~~A~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 229 (610)
+++|...|+++. .| +..+|..+...+.+.|++++|.+.|+++. .| +...+..+...+...|++++|++.|+++.
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 777777776664 22 44567777777777777777777776654 22 44567777778888888888888888888
Q ss_pred HcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhH
Q 037713 230 REGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVS 306 (610)
Q Consensus 230 ~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~ 306 (610)
+.. |.+..++..+...+...|+++.|...++.+.+.. +.+...+..+...+...|++++|...|++..+ .+..+
T Consensus 163 ~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 239 (388)
T 1w3b_A 163 ETQ--PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV 239 (388)
T ss_dssp HHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHH
T ss_pred HhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHH
Confidence 765 2467788888888888888888888888888765 34567788888999999999999999887753 36788
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHH
Q 037713 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLS 386 (610)
Q Consensus 307 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 386 (610)
|..+...|...|++++|++.|+++.+... .+..++..+..++.+.|++++|.+.|+.+.+. .+.+..++..+...|.
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHH
Confidence 99999999999999999999999998632 25778999999999999999999999999884 4667889999999999
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhc
Q 037713 387 RSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAA 455 (610)
Q Consensus 387 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 455 (610)
+.|++++|.+.++++ ...| +..++..+...+...|++++|...++++++++|+++.+|..++.++...|
T Consensus 317 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 999999999999988 5555 47789999999999999999999999999999999999999998887665
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.8e-28 Score=251.88 Aligned_cols=184 Identities=16% Similarity=0.161 Sum_probs=174.4
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccc---------cHHHHHHHHHHHHHhCCCCch
Q 037713 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFA---------VLELGKQIHGLVIALGYESCL 273 (610)
Q Consensus 203 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~---------~~~~a~~~~~~~~~~~~~~~~ 273 (610)
..++.+|.+|++.|+.++|+++|++|.+.|++ ||..||+++|.+|++.+ .++.|.+++++|.+.|+.||.
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~-pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQ-LSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCC-CCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 46888999999999999999999999999999 99999999999998654 478999999999999999999
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcC----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037713 274 FISNAIVDMYAKCSDIIAAKDIFGRMR----RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYAC 349 (610)
Q Consensus 274 ~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 349 (610)
.+||+||.+|++.|++++|.++|++|. .||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||++||.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999997 4799999999999999999999999999999999999999999999999
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhc
Q 037713 350 SHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRS 388 (610)
Q Consensus 350 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 388 (610)
++.|++++|.+++++|.+. +..|+..||+.++..|...
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred hhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999885 9999999999999998764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-25 Score=226.02 Aligned_cols=351 Identities=14% Similarity=0.074 Sum_probs=310.1
Q ss_pred HHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCCHH
Q 037713 112 VKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIK---LKNSVSWTAMLSAYARSGRKK 188 (610)
Q Consensus 112 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~ 188 (610)
...+.+.|++++|.+.+..+.+.. |.+...+..+...+.+.|++++|...++... ..+..+|..+...|.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 345667899999999999998875 5667788888899999999999999998776 336789999999999999999
Q ss_pred HHHHHHhhCC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHH
Q 037713 189 DAMEIFEQAP---VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVI 265 (610)
Q Consensus 189 ~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 265 (610)
+|...|+++. ..+..+|..+..++.+.|++++|++.|+++.+.. |.+...+..+...+...|++++|...+..+.
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 9999999875 3356789999999999999999999999999876 2456677788888999999999999999999
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 037713 266 ALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTF 342 (610)
Q Consensus 266 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 342 (610)
+.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|++...... .+..++
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~ 240 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVH 240 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CCHHHH
Confidence 874 44678899999999999999999999999863 3577899999999999999999999999987632 257889
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhc
Q 037713 343 VGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-P-FEPDEPTWAALLSACKHH 420 (610)
Q Consensus 343 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~ 420 (610)
..+..++...|++++|...|+.+.+. .+.+...|..+...|.+.|++++|.+.|+++ . .+++..+|..+...+...
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc
Confidence 99999999999999999999999873 3445788999999999999999999999998 2 345788999999999999
Q ss_pred CchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhh
Q 037713 421 RNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 421 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 469 (610)
|++++|...++++++..|+++.++..++.+|.+.|++++|.+.++.+.+
T Consensus 319 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999875
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=9.1e-28 Score=249.83 Aligned_cols=201 Identities=11% Similarity=0.147 Sum_probs=174.2
Q ss_pred HHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC---------H
Q 037713 219 IDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSD---------I 289 (610)
Q Consensus 219 ~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~---------~ 289 (610)
..+..+.+++.+.+....+...+..+|.+|++.|++++|.+++++|.+.|+.||..+||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3455666778777776334456889999999999999999999999999999999999999999997764 7
Q ss_pred HHHHHHHHhcC----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 037713 290 IAAKDIFGRMR----RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365 (610)
Q Consensus 290 ~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 365 (610)
++|.++|++|. .||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 89999999996 48999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhc
Q 037713 366 IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM---PFEPDEPTWAALLSACKHH 420 (610)
Q Consensus 366 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~ 420 (610)
.+. |+.||..+|++||++|++.|++++|.++|++| +..|+..||+.++..|+..
T Consensus 167 ~~~-G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VES-EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred Hhc-CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 985 99999999999999999999999999999999 8899999999999998764
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.9e-23 Score=217.85 Aligned_cols=264 Identities=9% Similarity=-0.075 Sum_probs=225.0
Q ss_pred hhhHHHHHHHHHh---CCChHHHHHHHHHHHH-----cCCC-------CCCHhHHHHHHHHHhccccHHHHHHHHHHHHH
Q 037713 202 LFLWTALVSGLVQ---SRNEIDAFYSFIEMRR-----EGVD-------IVDPLVLSSIVGACANFAVLELGKQIHGLVIA 266 (610)
Q Consensus 202 ~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~~~~-------~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 266 (610)
...+......+.. .|++++|+..|+++.+ .... |.+..++..+...+...|+++.|...++.+.+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 265 (514)
T 2gw1_A 186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE 265 (514)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3445555555554 8999999999999988 3111 13456778888899999999999999999998
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 037713 267 LGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFV 343 (610)
Q Consensus 267 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 343 (610)
.... ..++..+...|...|++++|...|+++.+ .+..+|..+...|...|++++|+..|++..+.... +..++.
T Consensus 266 ~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 342 (514)
T 2gw1_A 266 LFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYI 342 (514)
T ss_dssp HCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHH
T ss_pred hCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHH
Confidence 8644 88899999999999999999999998764 36788999999999999999999999999986433 567888
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHH
Q 037713 344 GLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM----PFEPD----EPTWAALLS 415 (610)
Q Consensus 344 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~ 415 (610)
.+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|...++++ +..|+ ...|..+..
T Consensus 343 ~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 420 (514)
T 2gw1_A 343 QLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKAT 420 (514)
T ss_dssp HHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHH
Confidence 9999999999999999999999874 3445688999999999999999999999887 22233 348888999
Q ss_pred HHHh---cCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhC
Q 037713 416 ACKH---HRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 416 ~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 470 (610)
.+.. .|++++|...++++++.+|+++.++..++.+|.+.|++++|.+.++...+.
T Consensus 421 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 421 LLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 9999 999999999999999999999999999999999999999999999988654
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-22 Score=211.31 Aligned_cols=308 Identities=10% Similarity=0.016 Sum_probs=232.3
Q ss_pred CCChhHHHHHHHHHHhCCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhhHHHHHH
Q 037713 137 CDDDVVKSSLVDMYAKCGLPNNARAVFDSIK---LKNSVSWTAMLSAYARSGRKKDAMEIFEQAP---VRNLFLWTALVS 210 (610)
Q Consensus 137 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~ 210 (610)
+.+...+..+...|.+.|++++|..+|+++. ..+..+|..+...|.+.|++++|...|+++. ..+..+|..+..
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 102 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGH 102 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 3445555566666666666666666666554 2245566666666666666666666666543 224566777777
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCCH---hHHHHH------------HHHHhccccHHHHHHHHHHHHHhCCCCchhH
Q 037713 211 GLVQSRNEIDAFYSFIEMRREGVDIVDP---LVLSSI------------VGACANFAVLELGKQIHGLVIALGYESCLFI 275 (610)
Q Consensus 211 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~---~t~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 275 (610)
.|.+.|++++|++.|+++.+... .+. ..+..+ ...+...|+++.|...++.+.+.. +.+..+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 179 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNP--SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAEL 179 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCC--CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 77777777777777777776541 233 444433 334777888888888888888764 456778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHH------
Q 037713 276 SNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN-EVTFVGL------ 345 (610)
Q Consensus 276 ~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~l------ 345 (610)
+..+..+|.+.|++++|...|+++.+ .+..+|..+...|...|++++|+..|+++... .|+ ...+..+
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKL 257 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHH
Confidence 88899999999999999999998863 47889999999999999999999999999875 344 3344333
Q ss_pred ------HHHHhccCCHHHHHHHHHHhHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 037713 346 ------IYACSHVGLVGKGRKLFKSMIEDYGITPS--LQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLS 415 (610)
Q Consensus 346 ------l~a~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~ 415 (610)
..+|.+.|++++|..+|+.+.+...-.|. ..+|..+..++.+.|++++|.+.++++ ...| +...|..+..
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 337 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAE 337 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 78899999999999999999874221111 458899999999999999999999987 4445 6889999999
Q ss_pred HHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHH
Q 037713 416 ACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSN 449 (610)
Q Consensus 416 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 449 (610)
+|...|++++|...++++++++|+++..+..++.
T Consensus 338 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 371 (450)
T 2y4t_A 338 AYLIEEMYDEAIQDYETAQEHNENDQQIREGLEK 371 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 9999999999999999999999999999988883
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-22 Score=215.08 Aligned_cols=435 Identities=9% Similarity=-0.056 Sum_probs=310.4
Q ss_pred hhHHHhhhhhhccCChHHHHHHHHHHHHhCCCCCCchHHHHHHHhhcCCChHHHHHHHccCC--CC-CcchHHHHHHHHH
Q 037713 4 SHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP--QR-DHVSWASILTAYN 80 (610)
Q Consensus 4 ~~y~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~--~~-~~~~~~~li~~~~ 80 (610)
..+...-..+...|+++.|...+..+++.. |++..+..+..+|.+.|++++|.+.|+++. .| +..+|..+..+|.
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 344455566677788888888888888775 577788888888888888888888887765 23 5567888888888
Q ss_pred cCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHH---HHHHHhCCChH
Q 037713 81 QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSL---VDMYAKCGLPN 157 (610)
Q Consensus 81 ~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l---i~~~~~~g~~~ 157 (610)
+.|++++|+..|+++...+ +++......++..+........+.+.+..+.+.+..|+....+.- ...........
T Consensus 85 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNG--DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSS--SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHhhHHHHHHHHHHHHhcC--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 8888888888888887754 334444444444443332222232222222111111111100000 00000111111
Q ss_pred HHHHHHHhcC---------CC-ChhhHHHHHHHHHh---cCCHHHHHHHHhhCCC----------------C-ChhhHHH
Q 037713 158 NARAVFDSIK---------LK-NSVSWTAMLSAYAR---SGRKKDAMEIFEQAPV----------------R-NLFLWTA 207 (610)
Q Consensus 158 ~A~~~~~~m~---------~~-~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~----------------~-~~~~~~~ 207 (610)
.+...+.... .+ +...+......+.. .|++++|...|+++.. + +..+|..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 1111111111 11 23444444444444 7889999888877544 1 3467888
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 037713 208 LVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287 (610)
Q Consensus 208 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 287 (610)
+...+...|++++|+..|+++.+.. |+...+..+..++...|+++.|...++.+.+.. +.+..++..+...|.+.|
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELF---PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC---ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhC
Confidence 8899999999999999999998876 448888889999999999999999999988764 446778899999999999
Q ss_pred CHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 037713 288 DIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKS 364 (610)
Q Consensus 288 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 364 (610)
++++|...|++..+ .+..+|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.
T Consensus 319 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp CTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999998753 467889999999999999999999999998763 23567888899999999999999999999
Q ss_pred hHHhcCCCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhc
Q 037713 365 MIEDYGITPS----LQHYTCLLDLLSR---SGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLS 435 (610)
Q Consensus 365 ~~~~~~~~~~----~~~~~~li~~~~~---~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 435 (610)
+.+...-.++ ...+..+...|.+ .|++++|.+.++++ ...| +..++..+...+...|++++|...++++++
T Consensus 398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 8775333333 4489999999999 99999999999987 3334 577888899999999999999999999999
Q ss_pred CCCCCCcchHhH
Q 037713 436 LKPEDPSSYILL 447 (610)
Q Consensus 436 ~~p~~~~~~~~l 447 (610)
++|+++..+..+
T Consensus 478 ~~~~~~~~~~~~ 489 (514)
T 2gw1_A 478 LARTMEEKLQAI 489 (514)
T ss_dssp HCSSHHHHHHHH
T ss_pred hccccHHHHHHH
Confidence 999887666554
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.3e-21 Score=200.24 Aligned_cols=344 Identities=9% Similarity=0.010 Sum_probs=226.5
Q ss_pred CcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHH
Q 037713 68 DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLV 147 (610)
Q Consensus 68 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 147 (610)
+...|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...+..+++.+ +.+..++..+.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 55668888888888888888888888887743 3467777788888888888888888888888776 55677888888
Q ss_pred HHHHhCCChHHHHHHHHhcCCCC---h---hhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHH
Q 037713 148 DMYAKCGLPNNARAVFDSIKLKN---S---VSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221 (610)
Q Consensus 148 ~~~~~~g~~~~A~~~~~~m~~~~---~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 221 (610)
.+|.+.|++++|.+.|+++...+ . ..|..++..+...+ +..+...+.+.|++++|
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------------------~~~~a~~~~~~~~~~~A 162 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR-------------------LRSQALNAFGSGDYTAA 162 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH-------------------HHHHHHHHHHcCCHHHH
Confidence 88888888888888888876432 2 55555544421111 11222334445555555
Q ss_pred HHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 037713 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR 301 (610)
Q Consensus 222 ~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~ 301 (610)
+..|+++.+.. |.+...+..+..++...|+++.|...++.+.+.. +.+..++..+...|.+.|++++|...|+++.+
T Consensus 163 ~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 163 IAFLDKILEVC--VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239 (450)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555443 1345555555555555555555555555555442 23455555666666666666666666665542
Q ss_pred --C-ChhHHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHhccCCHHHHHHH
Q 037713 302 --K-DVVSWTSI------------IVGTAQHGQAEETLALYDEMVSAGVKPN-----EVTFVGLIYACSHVGLVGKGRKL 361 (610)
Q Consensus 302 --~-~~~~~~~l------------i~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~ 361 (610)
| +...+..+ ...+...|++++|+..|+++.+. .|+ ...+..+..++.+.|++++|...
T Consensus 240 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 317 (450)
T 2y4t_A 240 LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRV 317 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 2 23333333 67778888888888888888774 344 34677777888888888888888
Q ss_pred HHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH------------HHhcC-----c
Q 037713 362 FKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD-EPTWAALLSA------------CKHHR-----N 422 (610)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~------------~~~~g-----~ 422 (610)
++.+.+. .+.+...|..+..+|.+.|++++|...++++ ...|+ ...+..+..+ |...| +
T Consensus 318 ~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~ 395 (450)
T 2y4t_A 318 CSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAK 395 (450)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCC
T ss_pred HHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCC
Confidence 8887763 2345678888888888888888888888877 55565 4444444422 33333 5
Q ss_pred hhHHHHHHHH-HhcCCCCC
Q 037713 423 TEMGTRVANH-LLSLKPED 440 (610)
Q Consensus 423 ~~~a~~~~~~-~~~~~p~~ 440 (610)
.+++.+.+++ .++..|++
T Consensus 396 ~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 396 KQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp TTHHHHHHHHHHHHSCGGG
T ss_pred HHHHHHHHHHHHHHhCCCC
Confidence 6777888886 66777764
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.90 E-value=3.1e-21 Score=205.30 Aligned_cols=420 Identities=10% Similarity=-0.018 Sum_probs=297.1
Q ss_pred chHHHHHHHhhcCCChHHHHHHHccCC---CCCcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHH
Q 037713 39 PLPNTLIDAYGKCDLVQYAHHLLEEMP---QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKAC 115 (610)
Q Consensus 39 ~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~ 115 (610)
..+..+...|.+.|++++|.+.|+++. ..+..+|..+...|.+.|++++|++.|+++.+.+ +.+..++..+..++
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHH
Confidence 345556666666777777777776654 2355666666777777777777777777766643 22455566666666
Q ss_pred hccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCC------ChhhHHHHHHHHHhcCCHHH
Q 037713 116 GSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK------NSVSWTAMLSAYARSGRKKD 189 (610)
Q Consensus 116 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~g~~~~ 189 (610)
...|++++|...++ .+.. .|+. .+..+..+...+....|...++.+... ........+..+....+.+.
T Consensus 104 ~~~g~~~~A~~~~~-~~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHcCCHHHHHHHHH-HHhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 67777777777664 3222 1211 122233444444556666666666432 12223444555566666677
Q ss_pred HHHHHhhCCCCChh---hHHHHHHHHHhC--------CChHHHHHHHHHHHHcCCCCCC-----HhHHHHHHHHHhcccc
Q 037713 190 AMEIFEQAPVRNLF---LWTALVSGLVQS--------RNEIDAFYSFIEMRREGVDIVD-----PLVLSSIVGACANFAV 253 (610)
Q Consensus 190 A~~~~~~~~~~~~~---~~~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~~p~-----~~t~~~ll~~~~~~~~ 253 (610)
+...+......+.. .+..+...+... |++++|+.+|+++.+.....++ ..++..+...+...|+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~ 258 (537)
T 3fp2_A 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNN 258 (537)
T ss_dssp HHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhccc
Confidence 66666665544332 333333333322 4789999999999876632111 2346666677888899
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 037713 254 LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEM 330 (610)
Q Consensus 254 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m 330 (610)
++.|...+..+.+.. |+..++..+...|.+.|++++|...|+++.+ .+..+|..+...+...|++++|+..|++.
T Consensus 259 ~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 336 (537)
T 3fp2_A 259 LLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKA 336 (537)
T ss_dssp HHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999999875 4478888999999999999999999998863 46788999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCC-
Q 037713 331 VSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM----PFEP- 405 (610)
Q Consensus 331 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p- 405 (610)
.+.... +..++..+..++...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.++++ +..+
T Consensus 337 ~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 413 (537)
T 3fp2_A 337 QSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK 413 (537)
T ss_dssp HHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh
Confidence 886432 5678888999999999999999999999884 3456778999999999999999999999887 1111
Q ss_pred ---CHHHHHHHHHHHHhc----------CchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhC
Q 037713 406 ---DEPTWAALLSACKHH----------RNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 406 ---~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 470 (610)
....+..+...+... |++++|...++++++.+|+++.++..++.+|...|++++|.+.++...+.
T Consensus 414 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 414 IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 222344455667777 99999999999999999999999999999999999999999999988754
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-20 Score=198.54 Aligned_cols=428 Identities=9% Similarity=-0.025 Sum_probs=326.7
Q ss_pred hhHHHhhhhhhccCChHHHHHHHHHHHHhCCCCCCchHHHHHHHhhcCCChHHHHHHHccCC---CCCcchHHHHHHHHH
Q 037713 4 SHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP---QRDHVSWASILTAYN 80 (610)
Q Consensus 4 ~~y~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~ 80 (610)
..|..+-..+.+.|+++.|...+..+++.. +.++..+..+...|.+.|++++|.+.|+++. ..+..+|..+...+.
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 345555667788899999999999999886 3467889999999999999999999999875 336778999999999
Q ss_pred cCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcC--CCCChhHHHHHHHHHHhCCChHH
Q 037713 81 QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSP--FCDDDVVKSSLVDMYAKCGLPNN 158 (610)
Q Consensus 81 ~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~ 158 (610)
+.|++++|+..|+.+ . ..|+... ..+..+...+....|...+..+++.. ..+........+..|....+.+.
T Consensus 105 ~~g~~~~A~~~~~~~-~---~~~~~~~--~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVL-S---LNGDFDG--ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHTCHHHHHHHHHHH-C----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HcCCHHHHHHHHHHH-h---cCCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 999999999999744 3 2333222 11223334445677888888886641 11112223445566777888888
Q ss_pred HHHHHHhcCCCChh---hHHHHHHHHHh--------cCCHHHHHHHHhhCCCCC----------hhhHHHHHHHHHhCCC
Q 037713 159 ARAVFDSIKLKNSV---SWTAMLSAYAR--------SGRKKDAMEIFEQAPVRN----------LFLWTALVSGLVQSRN 217 (610)
Q Consensus 159 A~~~~~~m~~~~~~---~~~~li~~~~~--------~g~~~~A~~~~~~~~~~~----------~~~~~~li~~~~~~g~ 217 (610)
+...+......+.. .+..+...+.. .|++++|..+|+++...+ ..+|..+...+...|+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~ 258 (537)
T 3fp2_A 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNN 258 (537)
T ss_dssp HHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhccc
Confidence 88877777655443 34444433322 258899999998876432 2256777788999999
Q ss_pred hHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 037713 218 EIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFG 297 (610)
Q Consensus 218 ~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 297 (610)
+++|+..|+++.+.. |+...+..+...+...|+++.|...+..+.+.. +.+..++..+...|.+.|++++|...|+
T Consensus 259 ~~~A~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 259 LLDAQVLLQESINLH---PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp HHHHHHHHHHHHHHC---CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC---CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 999999999999876 668889999999999999999999999999876 4567889999999999999999999999
Q ss_pred hcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-
Q 037713 298 RMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP- 373 (610)
Q Consensus 298 ~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~- 373 (610)
+..+ .+..+|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...|+.+.+...-.+
T Consensus 335 ~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 413 (537)
T 3fp2_A 335 KAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK 413 (537)
T ss_dssp HHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh
Confidence 8863 467889999999999999999999999998864 33567888899999999999999999999876421111
Q ss_pred ---CHHHHHHHHHHHHhc----------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCC
Q 037713 374 ---SLQHYTCLLDLLSRS----------GHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKP 438 (610)
Q Consensus 374 ---~~~~~~~li~~~~~~----------g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 438 (610)
....+..+...|.+. |++++|...|++. ...| +...|..+...+...|++++|...+++++++.|
T Consensus 414 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 414 IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 223355566778888 9999999999988 3334 578889999999999999999999999999999
Q ss_pred CCCcc
Q 037713 439 EDPSS 443 (610)
Q Consensus 439 ~~~~~ 443 (610)
.++..
T Consensus 494 ~~~~~ 498 (537)
T 3fp2_A 494 TMDEK 498 (537)
T ss_dssp -CHHH
T ss_pred CcHHH
Confidence 87554
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.6e-18 Score=170.38 Aligned_cols=314 Identities=10% Similarity=-0.027 Sum_probs=199.3
Q ss_pred hHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCC
Q 037713 107 VFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGR 186 (610)
Q Consensus 107 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~ 186 (610)
.+..+...+...|++++|...+..+++.. +.+..++..+...|...|++++|...|++....
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------------- 66 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL----------------- 66 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----------------
Confidence 34444444555555555555555555443 334444455555555555555555544443210
Q ss_pred HHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC----CHhHHHHH------------HHHHhc
Q 037713 187 KKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIV----DPLVLSSI------------VGACAN 250 (610)
Q Consensus 187 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p----~~~t~~~l------------l~~~~~ 250 (610)
...+...|..+...+...|++++|+..|+++.+.. | +...+..+ ...+..
T Consensus 67 -----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 132 (359)
T 3ieg_A 67 -----------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN---PSEQEEKEAESQLVKADEMQRLRSQALDAFD 132 (359)
T ss_dssp -----------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcC---CcccChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11234455555556666666666666666665543 3 22222222 355566
Q ss_pred cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHH
Q 037713 251 FAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALY 327 (610)
Q Consensus 251 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~ 327 (610)
.|+++.|...+..+.+.. +.+..++..+...|.+.|++++|...|+++.+ .+..+|..+...+...|++++|...|
T Consensus 133 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 211 (359)
T 3ieg_A 133 GADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEV 211 (359)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 667777777776666654 34556677777777778888888877777653 35677778888888888888888888
Q ss_pred HHHHHcCCCCCHHHHH------------HHHHHHhccCCHHHHHHHHHHhHHhcCCCCCH--HHHHHHHHHHHhcCCHHH
Q 037713 328 DEMVSAGVKPNEVTFV------------GLIYACSHVGLVGKGRKLFKSMIEDYGITPSL--QHYTCLLDLLSRSGHLDE 393 (610)
Q Consensus 328 ~~m~~~g~~p~~~t~~------------~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~ 393 (610)
++..+.... +...+. .+...+.+.|++++|...++.+.+...-.+.. ..+..+...|.+.|++++
T Consensus 212 ~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 290 (359)
T 3ieg_A 212 RECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVE 290 (359)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHH
Confidence 887765321 222222 23566788889999999988887742211111 335567788888999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhh
Q 037713 394 AENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASA 454 (610)
Q Consensus 394 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 454 (610)
|.+.+++. ...| +..+|..+...+...|++++|...++++++++|+++..+..+..++...
T Consensus 291 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 291 AIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 99888887 3344 6778888888889999999999999999999998887777776665543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=5.9e-18 Score=169.55 Aligned_cols=295 Identities=9% Similarity=0.035 Sum_probs=240.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHH
Q 037713 171 SVSWTAMLSAYARSGRKKDAMEIFEQAP---VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGA 247 (610)
Q Consensus 171 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~ 247 (610)
+..|..+...+.+.|++++|...|+++. ..+..+|..+...+...|++++|+..|+++.+.. |.+...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK--MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCcchHHHHHHHH
Confidence 3445556666666667777777666543 3356788888999999999999999999998875 2577889999999
Q ss_pred HhccccHHHHHHHHHHHHHhCCC--CchhHHHHH------------HHHHHhcCCHHHHHHHHHhcCC---CChhHHHHH
Q 037713 248 CANFAVLELGKQIHGLVIALGYE--SCLFISNAI------------VDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSI 310 (610)
Q Consensus 248 ~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------i~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~l 310 (610)
+...|+++.|...++.+.+.... .+...+..+ ...|...|++++|...|+++.+ .+...|..+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 160 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELR 160 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 99999999999999999876420 244455544 5889999999999999998863 477889999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHH-----------
Q 037713 311 IVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYT----------- 379 (610)
Q Consensus 311 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----------- 379 (610)
...+...|++++|+..+++..+.. +.+..++..+...+...|++++|...++...+.. +.+...+.
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~ 237 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKL 237 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHHHH
Confidence 999999999999999999998863 3468889999999999999999999999998742 23333333
Q ss_pred -HHHHHHHhcCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhh
Q 037713 380 -CLLDLLSRSGHLDEAENLIKAM-PFEPD-E----PTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYA 452 (610)
Q Consensus 380 -~li~~~~~~g~~~~A~~~~~~m-~~~p~-~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 452 (610)
.+...+.+.|++++|.+.++++ ...|+ . ..+..+...+...|++++|...++++++.+|+++..+..++.+|.
T Consensus 238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (359)
T 3ieg_A 238 IESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYL 317 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3366799999999999999987 33444 2 234456778999999999999999999999999999999999999
Q ss_pred hhcchhHHHHHHHHHhhC
Q 037713 453 SAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 453 ~~g~~~~a~~~~~~m~~~ 470 (610)
..|++++|.+.++...+.
T Consensus 318 ~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 318 IEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHhc
Confidence 999999999999998753
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-18 Score=172.36 Aligned_cols=237 Identities=11% Similarity=0.050 Sum_probs=90.8
Q ss_pred hcCCChHHHHHHHccCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHH
Q 037713 49 GKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVH 128 (610)
Q Consensus 49 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~ 128 (610)
-+.|++++|.+.++++++|+ +|+.|..++.+.|++++|++.|.+ .+|..+|..++.++...|++++|...+
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik-------a~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK-------ADDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc-------CCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 37789999999999997765 899999999999999999999964 257779999999999999999999988
Q ss_pred HHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHH
Q 037713 129 ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTAL 208 (610)
Q Consensus 129 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 208 (610)
....+. .+++.+.+.|+.+|.+.|+++++.++++. |+..+|+.+...|...|++++|...|.++ ..|..+
T Consensus 85 ~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~L 154 (449)
T 1b89_A 85 QMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRL 154 (449)
T ss_dssp --------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCHHHH
T ss_pred HHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHH
Confidence 877774 45688899999999999999999988864 67789999999999999999999999987 589999
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 037713 209 VSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSD 288 (610)
Q Consensus 209 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 288 (610)
+.++.+.|++++|++.++++ .++.+|..++.+|...|+++.|...... +...+.-...++..|.+.|.
T Consensus 155 A~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~ 222 (449)
T 1b89_A 155 ASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGY 222 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCC
Confidence 99999999999999999988 4678888888888888888888543332 12222223346666666666
Q ss_pred HHHHHHHHHhcCCC---ChhHHHHHHHHHHh
Q 037713 289 IIAAKDIFGRMRRK---DVVSWTSIIVGTAQ 316 (610)
Q Consensus 289 ~~~A~~~~~~~~~~---~~~~~~~li~~~~~ 316 (610)
+++|..+++....- ....|+-|...|++
T Consensus 223 ~eEai~lLe~aL~le~ah~~~ftel~il~~k 253 (449)
T 1b89_A 223 FEELITMLEAALGLERAHMGMFTELAILYSK 253 (449)
T ss_dssp HHHHHHHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHh
Confidence 66666666655432 34455555544444
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.3e-17 Score=162.16 Aligned_cols=289 Identities=12% Similarity=-0.004 Sum_probs=180.9
Q ss_pred CCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCC
Q 037713 137 CDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSR 216 (610)
Q Consensus 137 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 216 (610)
+.+..++..+...+...|++++|.++|+++...+ ..+...+..++..+...|
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~----------------------------p~~~~~~~~~~~~~~~~~ 70 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD----------------------------PFHASCLPVHIGTLVELN 70 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------TTCTTTHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----------------------------CCChhhHHHHHHHHHHhh
Confidence 4455556666666666666666666666554111 112233333444444444
Q ss_pred ChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccc-cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 037713 217 NEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFA-VLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDI 295 (610)
Q Consensus 217 ~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 295 (610)
++++|+.+++++.+... .+...+..+...+...| +++.|...++.+.+.. +.+...+..+...|...|++++|...
T Consensus 71 ~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 147 (330)
T 3hym_B 71 KANELFYLSHKLVDLYP--SNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAA 147 (330)
T ss_dssp CHHHHHHHHHHHHHHCT--TSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHH
Confidence 45555555544444331 23444444444455555 4555555555544432 22344556666666666666666666
Q ss_pred HHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC--
Q 037713 296 FGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYG-- 370 (610)
Q Consensus 296 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-- 370 (610)
|++..+ .+..+|..+...|...|++++|...|++..+.. +.+...+..+...+...|++++|...++.+.+...
T Consensus 148 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 226 (330)
T 3hym_B 148 YFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAI 226 (330)
T ss_dssp HHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhc
Confidence 666542 234566667777777777777777777776653 23566777777777777888888777777766321
Q ss_pred -----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcc
Q 037713 371 -----ITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSS 443 (610)
Q Consensus 371 -----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 443 (610)
.+.+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++++++|+++..
T Consensus 227 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 306 (330)
T 3hym_B 227 GNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFS 306 (330)
T ss_dssp SCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHH
T ss_pred cccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHH
Confidence 1334577888888888888888888888876 2233 46677888888888899999999999998888988888
Q ss_pred hHhHHHHh-hhhcch
Q 037713 444 YILLSNVY-ASAAMW 457 (610)
Q Consensus 444 ~~~l~~~~-~~~g~~ 457 (610)
+..++.++ ...|+.
T Consensus 307 ~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 307 VTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHhCch
Confidence 88888877 444543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.80 E-value=6.8e-16 Score=162.02 Aligned_cols=367 Identities=10% Similarity=-0.027 Sum_probs=285.8
Q ss_pred CCcchHHHHHHHHHc----CCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhc----cCCcHHHHHHHHHHHhcCCCC
Q 037713 67 RDHVSWASILTAYNQ----ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGS----LGATRLGKQVHACFVLSPFCD 138 (610)
Q Consensus 67 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~ 138 (610)
.+..++..+...|.. .+++++|+..|++..+.| +...+..+...+.. .++.++|...+....+.|
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--- 109 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 356666666666766 778888888888877755 55566666666666 778888888888887765
Q ss_pred ChhHHHHHHHHHHh----CCChHHHHHHHHhcCCC-ChhhHHHHHHHHHh----cCCHHHHHHHHhhCCC-CChhhHHHH
Q 037713 139 DDVVKSSLVDMYAK----CGLPNNARAVFDSIKLK-NSVSWTAMLSAYAR----SGRKKDAMEIFEQAPV-RNLFLWTAL 208 (610)
Q Consensus 139 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l 208 (610)
+...+..|..+|.. .+++++|.+.|++..+. +..++..+...|.. .++.++|.+.|++..+ .+..++..+
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~L 189 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQL 189 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 55666667777777 77888888888776643 56677777777776 7788888888877543 366788888
Q ss_pred HHHHHh----CCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhc----cccHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 037713 209 VSGLVQ----SRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACAN----FAVLELGKQIHGLVIALGYESCLFISNAIV 280 (610)
Q Consensus 209 i~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 280 (610)
...|.. .+++++|++.|++..+.+ ++..+..+...+.. .++.++|...++...+.+ +...+..|.
T Consensus 190 g~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 262 (490)
T 2xm6_A 190 GYMYSRGLGVERNDAISAQWYRKSATSG----DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLG 262 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHH
T ss_pred HHHHhcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 888887 889999999999888764 45566666666665 788999999999888765 456677788
Q ss_pred HHHHh----cCCHHHHHHHHHhcCC-CChhHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 037713 281 DMYAK----CSDIIAAKDIFGRMRR-KDVVSWTSIIVGTAQH-----GQAEETLALYDEMVSAGVKPNEVTFVGLIYACS 350 (610)
Q Consensus 281 ~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 350 (610)
.+|.. .++.++|...|++..+ .+..++..+...|... ++.++|+..|++..+.| +...+..+...+.
T Consensus 263 ~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~ 339 (490)
T 2xm6_A 263 YILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYF 339 (490)
T ss_dssp HHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHH
Confidence 88888 8999999999998875 4677888888888887 89999999999998875 4566777777777
Q ss_pred ccC---CHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----
Q 037713 351 HVG---LVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSR----SGHLDEAENLIKAMPFEPDEPTWAALLSACKH---- 419 (610)
Q Consensus 351 ~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~---- 419 (610)
..| +.++|.++|+...+. .+...+..|..+|.. .+++++|.+.|++.-...+...+..|...|..
T Consensus 340 ~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~ 415 (490)
T 2xm6_A 340 RLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGV 415 (490)
T ss_dssp HSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSS
T ss_pred hCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCC
Confidence 766 789999999999873 467888899999988 89999999999988223367788888888887
Q ss_pred cCchhHHHHHHHHHhcCCCC---CCcchHhHHHHhhhh
Q 037713 420 HRNTEMGTRVANHLLSLKPE---DPSSYILLSNVYASA 454 (610)
Q Consensus 420 ~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~ 454 (610)
.++.++|...|+++.+.+|+ ++.+...|+.++...
T Consensus 416 ~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~~ 453 (490)
T 2xm6_A 416 ERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAKQ 453 (490)
T ss_dssp CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHhH
Confidence 89999999999999998854 667777777776643
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.80 E-value=8.5e-18 Score=169.42 Aligned_cols=278 Identities=11% Similarity=-0.032 Sum_probs=207.1
Q ss_pred cCCHHHHHH-HHhhCCCC-------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHH
Q 037713 184 SGRKKDAME-IFEQAPVR-------NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLE 255 (610)
Q Consensus 184 ~g~~~~A~~-~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~ 255 (610)
.|++++|.. .|++.... +...|..+...+.+.|++++|+..|+++.+.. |.+...+..+..++...|+++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCcCHH
Confidence 355666666 55543311 23456677777777777777777777777654 246667777777777777777
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHH---------------HHHHHHhc
Q 037713 256 LGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR--K-DVVSWTS---------------IIVGTAQH 317 (610)
Q Consensus 256 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~---------------li~~~~~~ 317 (610)
.|...++.+.+.. +.+..++..+...|.+.|++++|...|+++.+ | +...+.. .+..+...
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 7777777777664 34566777777777777888887777777653 2 2222211 13333488
Q ss_pred CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037713 318 GQAEETLALYDEMVSAGVKP-NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAEN 396 (610)
Q Consensus 318 g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 396 (610)
|++++|+..|+++.+..... +..++..+...+...|++++|...++.+.+. .+.+...|..+...|.+.|++++|.+
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999998864321 5788999999999999999999999999874 34467899999999999999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC-----------CcchHhHHHHhhhhcchhHHHHH
Q 037713 397 LIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED-----------PSSYILLSNVYASAAMWQHVSKV 463 (610)
Q Consensus 397 ~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~a~~~ 463 (610)
.|+++ ...| +...+..+...+...|++++|...+++++++.|++ +.+|..++.+|...|++++|..+
T Consensus 273 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 273 AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 99987 3344 57889999999999999999999999999888876 68899999999999999999988
Q ss_pred HHH
Q 037713 464 RKL 466 (610)
Q Consensus 464 ~~~ 466 (610)
++.
T Consensus 353 ~~~ 355 (368)
T 1fch_A 353 DAR 355 (368)
T ss_dssp HTT
T ss_pred HHH
Confidence 663
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.79 E-value=2.8e-16 Score=166.72 Aligned_cols=406 Identities=11% Similarity=0.009 Sum_probs=224.8
Q ss_pred CCchHHHHHHHhhcCCChHHHHHHHccCCC--C-CcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHH
Q 037713 37 YGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ--R-DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVK 113 (610)
Q Consensus 37 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~ 113 (610)
+...|..++. +.+.|+++.|+.+|+++.+ | +...|...+..+.+.|++++|..+|+++.. ..|+...|...+.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~---~~p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLM---KVLHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---TCCCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---cCCChHHHHHHHH
Confidence 5667888887 4778899999999988764 3 555688888888889999999999999887 4577666666664
Q ss_pred HH-hccCCcHHHHH----HHHHHHhc-CCCC-ChhHHHHHHHHHHh---------CCChHHHHHHHHhcCC-CCh---hh
Q 037713 114 AC-GSLGATRLGKQ----VHACFVLS-PFCD-DDVVKSSLVDMYAK---------CGLPNNARAVFDSIKL-KNS---VS 173 (610)
Q Consensus 114 ~~-~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~-~~~---~~ 173 (610)
.. ...|+.+.|++ +|+..++. |..| +...|...+....+ .|+++.|..+|++... |+. ..
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 33 34566666655 66666543 5443 45677777776654 5778888888887664 211 22
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHH------HcCC--CCCC--------
Q 037713 174 WTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMR------REGV--DIVD-------- 237 (610)
Q Consensus 174 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~------~~~~--~~p~-------- 237 (610)
|..........|. ..+..++. ...+++.+|..++.+.. +..+ .||+
T Consensus 168 ~~~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~ 229 (530)
T 2ooe_A 168 WRDYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQ 229 (530)
T ss_dssp HHHHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHH
T ss_pred HHHHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHH
Confidence 3222211000000 00111110 01223344444443321 1100 0122
Q ss_pred HhHHHHHHHHHhc----cccH----HHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-------cCCHH-------HHHHH
Q 037713 238 PLVLSSIVGACAN----FAVL----ELGKQIHGLVIALGYESCLFISNAIVDMYAK-------CSDII-------AAKDI 295 (610)
Q Consensus 238 ~~t~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~-------~g~~~-------~A~~~ 295 (610)
...|...+..... .++. +.+..+++.+++.. +.+..+|..++..+.+ .|+++ +|..+
T Consensus 230 ~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~ 308 (530)
T 2ooe_A 230 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 308 (530)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHH
Confidence 1223322222211 1111 24455555555542 3345556656555554 46654 66666
Q ss_pred HHhcCC---C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 037713 296 FGRMRR---K-DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN--EVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369 (610)
Q Consensus 296 ~~~~~~---~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 369 (610)
|++..+ | +...|..++..+.+.|++++|..+|+++.+. .|+ ...|..++..+.+.|++++|.++|+...+.
T Consensus 309 ~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~- 385 (530)
T 2ooe_A 309 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED- 385 (530)
T ss_dssp HHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 666543 2 4556666666666666666666666666653 333 235666666666666666666666666542
Q ss_pred CCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCc----
Q 037713 370 GITPSLQHYTCLLDL-LSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS---- 442 (610)
Q Consensus 370 ~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---- 442 (610)
.+.+...|...... +...|+.++|..+|++. ...| +...|..++..+...|+.+.|..+|+++++..|.++.
T Consensus 386 -~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~ 464 (530)
T 2ooe_A 386 -ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE 464 (530)
T ss_dssp -TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHH
T ss_pred -cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHH
Confidence 11122333222222 23466666666666655 2223 3556666666666666777777777766666554443
Q ss_pred chHhHHHHhhhhcchhHHHHHHHHHhh
Q 037713 443 SYILLSNVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 443 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 469 (610)
.+...+......|+.+.+.++.+.+.+
T Consensus 465 lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 465 IWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444445555566666666666666544
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=7.9e-17 Score=159.43 Aligned_cols=264 Identities=10% Similarity=0.026 Sum_probs=230.5
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHH
Q 037713 200 RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAI 279 (610)
Q Consensus 200 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 279 (610)
.+...+..+...+...|++++|+++|+++.+... .+...+..++.++...|+++.|...+..+.+.. +.+..++..+
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP--FHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 3566778888899999999999999999998763 566677778888899999999999999999875 4567888999
Q ss_pred HHHHHhcC-CHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 037713 280 VDMYAKCS-DIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLV 355 (610)
Q Consensus 280 i~~y~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 355 (610)
...|...| ++++|...|++..+ .+...|..+...+...|++++|+..|++..+.... +...+..+...+...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhH
Confidence 99999999 99999999998864 35788999999999999999999999999886433 456677799999999999
Q ss_pred HHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC----------CCCHHHHHHHHHHHHhcCchh
Q 037713 356 GKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PF----------EPDEPTWAALLSACKHHRNTE 424 (610)
Q Consensus 356 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~----------~p~~~~~~~ll~~~~~~g~~~ 424 (610)
++|...++.+.+. .+.+...+..+...|.+.|++++|...+++. .. ..+..+|..+...+...|+++
T Consensus 176 ~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 176 KLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 9999999999773 4556789999999999999999999999877 11 334678899999999999999
Q ss_pred HHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhh
Q 037713 425 MGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 425 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 469 (610)
+|...++++++..|+++..+..++.+|...|++++|.+.++...+
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999988754
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-15 Score=160.86 Aligned_cols=377 Identities=7% Similarity=0.041 Sum_probs=256.9
Q ss_pred CcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHH
Q 037713 68 DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLV 147 (610)
Q Consensus 68 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 147 (610)
|...|..++. +.+.|++++|..+|+++.+. .+-+...|...+..+.+.|+.+.|..+|+++++.. |+...|..++
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 6778988888 47789999999999999874 23356678888888888999999999999998764 5777777776
Q ss_pred H-HHHhCCChHHHHH----HHHhcC------CCChhhHHHHHHHHHh---------cCCHHHHHHHHhhCCCCChhhHHH
Q 037713 148 D-MYAKCGLPNNARA----VFDSIK------LKNSVSWTAMLSAYAR---------SGRKKDAMEIFEQAPVRNLFLWTA 207 (610)
Q Consensus 148 ~-~~~~~g~~~~A~~----~~~~m~------~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~ 207 (610)
. .....|+.++|.+ +|+... ..+...|...+....+ .|+++.|..+|++...........
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 5 3345677777665 555432 1245566666655443 456666666666543310000001
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHH------HhC---CCCc------
Q 037713 208 LVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVI------ALG---YESC------ 272 (610)
Q Consensus 208 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~------~~~---~~~~------ 272 (610)
+...|.. +++.. +..+...++. ...+.+..|..++.... +.. ++|+
T Consensus 167 ~~~~~~~---~e~~~--------------~~~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~ 227 (530)
T 2ooe_A 167 LWRDYNK---YEEGI--------------NIHLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEA 227 (530)
T ss_dssp HHHHHHH---HHHHH--------------CHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHH
T ss_pred HHHHHHH---HHHhh--------------chhHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHH
Confidence 1111110 00000 0000111110 13456677777666532 111 2443
Q ss_pred --hhHHHHHHHHHHhc----CCH----HHHHHHHHhcCC---CChhHHHHHHHHHHh-------cCChH-------HHHH
Q 037713 273 --LFISNAIVDMYAKC----SDI----IAAKDIFGRMRR---KDVVSWTSIIVGTAQ-------HGQAE-------ETLA 325 (610)
Q Consensus 273 --~~~~~~li~~y~~~----g~~----~~A~~~~~~~~~---~~~~~~~~li~~~~~-------~g~~~-------~A~~ 325 (610)
...|...+...... ++. +.|..+|++... .+...|..++..+.+ .|+.+ +|..
T Consensus 228 ~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~ 307 (530)
T 2ooe_A 228 QQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 307 (530)
T ss_dssp HHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHH
Confidence 35666666544332 232 477778887764 467889998888876 79987 8999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 037713 326 LYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPS-L-QHYTCLLDLLSRSGHLDEAENLIKAM-P 402 (610)
Q Consensus 326 l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~-~~~~~li~~~~~~g~~~~A~~~~~~m-~ 402 (610)
+|++..+.-.+-+...|..++..+.+.|++++|..+|+.+.+ +.|+ . ..|..++..+.+.|++++|.++|++. .
T Consensus 308 ~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~ 384 (530)
T 2ooe_A 308 IYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE 384 (530)
T ss_dssp HHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC---ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 999988631233578888999999999999999999999987 3454 3 58999999999999999999999988 4
Q ss_pred CCCC-HHHHHHHHHH-HHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhCC
Q 037713 403 FEPD-EPTWAALLSA-CKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVME 471 (610)
Q Consensus 403 ~~p~-~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 471 (610)
..|+ ...|...... +...|+.++|..+|+++++..|+++..+..++..+.+.|+.++|..+++.....+
T Consensus 385 ~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 385 DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp CTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred ccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 4443 2333322222 3468999999999999999999999999999999999999999999999987764
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.9e-17 Score=166.77 Aligned_cols=261 Identities=10% Similarity=-0.060 Sum_probs=206.2
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 037713 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIV 280 (610)
Q Consensus 201 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 280 (610)
+...|..+...+.+.|++++|++.|+++.+.. |.+...+..+..++...|+++.|...++.+.+.. +.+..++..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 44567778888888888888888888887765 2567778888888888888888888888887764 44577788888
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCC-------------hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHH
Q 037713 281 DMYAKCSDIIAAKDIFGRMRRKD-------------VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVK-PNEVTFVGLI 346 (610)
Q Consensus 281 ~~y~~~g~~~~A~~~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll 346 (610)
..|.+.|++++|...|+++.+.+ ...+..+...+...|++++|+..|+++.+.... ++..++..+.
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 88888888888888888876421 223345578889999999999999999886432 2688899999
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchh
Q 037713 347 YACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTE 424 (610)
Q Consensus 347 ~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~ 424 (610)
..+...|++++|...|+.+.+. .+.+..+|..+..+|.+.|++++|.+.|+++ ...| +..+|..+...|...|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 9999999999999999999874 3456789999999999999999999999988 4445 4788999999999999999
Q ss_pred HHHHHHHHHhcCCCC------------CCcchHhHHHHhhhhcchhHHHHHHHH
Q 037713 425 MGTRVANHLLSLKPE------------DPSSYILLSNVYASAAMWQHVSKVRKL 466 (610)
Q Consensus 425 ~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 466 (610)
+|...+++++++.|+ +...+..|..++...|+.+.+.++.+.
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999988765 356788999999999999998877554
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.77 E-value=8.4e-15 Score=161.40 Aligned_cols=284 Identities=13% Similarity=0.098 Sum_probs=223.8
Q ss_pred HHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHH
Q 037713 146 LVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSF 225 (610)
Q Consensus 146 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 225 (610)
+...+...|.+++|..+|++.. ......+.++. ..+++++|.++.++.. +..+|..+..++.+.|++++|++.|
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~-~~~~A~~VLie---~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsY 1128 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD-VNTSAVQVLIE---HIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSY 1128 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC-CHHHHHHHHHH---HHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 5566677788888888888864 22222233332 6778888888888663 4678889999999999999999999
Q ss_pred HHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh
Q 037713 226 IEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305 (610)
Q Consensus 226 ~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~ 305 (610)
.+. .|...|..++.+|.+.|+++++.+++..+.+.. ++..+.+.++.+|++.+++++...+. ..++..
T Consensus 1129 iKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~a 1196 (1630)
T 1xi4_A 1129 IKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNA 1196 (1630)
T ss_pred Hhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHH
Confidence 653 678888889999999999999999999888765 44444556999999999988654443 456777
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHH
Q 037713 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLL 385 (610)
Q Consensus 306 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 385 (610)
.|..+...|...|++++|..+|... ..|..+..++.+.|++++|.+.+++. .+..+|..+..++
T Consensus 1197 d~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-------~n~~aWkev~~ac 1260 (1630)
T 1xi4_A 1197 HIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFAC 1260 (1630)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHHHHHHHH
Confidence 8888999999999999999999984 47889999999999999999998776 3468888888999
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhh--cchhHHHHH
Q 037713 386 SRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASA--AMWQHVSKV 463 (610)
Q Consensus 386 ~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~a~~~ 463 (610)
...|++..|....... .-++..+..++..|.+.|.+++|+.+++..++++|.+...|..|+.+|++. ++..++.+.
T Consensus 1261 ve~~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~ 1338 (1630)
T 1xi4_A 1261 VDGKEFRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLEL 1338 (1630)
T ss_pred hhhhHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999999998877653 345556678889999999999999999999999998888888888887654 445555554
Q ss_pred HH
Q 037713 464 RK 465 (610)
Q Consensus 464 ~~ 465 (610)
|.
T Consensus 1339 f~ 1340 (1630)
T 1xi4_A 1339 FW 1340 (1630)
T ss_pred HH
Confidence 44
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.77 E-value=8.1e-16 Score=149.16 Aligned_cols=266 Identities=8% Similarity=0.001 Sum_probs=194.0
Q ss_pred hcCCHHHHHHHHhhCCCCCh----hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHH
Q 037713 183 RSGRKKDAMEIFEQAPVRNL----FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK 258 (610)
Q Consensus 183 ~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 258 (610)
..|++..|+..+++....++ .....+..+|...|++++|+..++. . .+|+..++..+...+...++.+.|.
T Consensus 11 ~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~--~~~~~~a~~~la~~~~~~~~~~~A~ 85 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S--SAPELQAVRMFAEYLASHSRRDAIV 85 (291)
T ss_dssp HTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T--SCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c--CChhHHHHHHHHHHHcCCCcHHHHH
Confidence 34555555555554443321 1233445566666666666654433 1 2255556666666666666666666
Q ss_pred HHHHHHHHhCC-CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 037713 259 QIHGLVIALGY-ESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKP 337 (610)
Q Consensus 259 ~~~~~~~~~~~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 337 (610)
+.++.+...+. +.+...+..+...|.+.|++++|.+.|++ ..+...+..++..|.+.|++++|.+.|+++.+.. |
T Consensus 86 ~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p 161 (291)
T 3mkr_A 86 AELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--E 161 (291)
T ss_dssp HHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--c
Confidence 66666666553 33566677778889999999999999998 5678899999999999999999999999999863 5
Q ss_pred CHHHH---HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 037713 338 NEVTF---VGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAA 412 (610)
Q Consensus 338 ~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ 412 (610)
+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..+|.+.|++++|.+.|++. ...| +..++..
T Consensus 162 ~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~ 239 (291)
T 3mkr_A 162 DATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLIN 239 (291)
T ss_dssp TCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 54211 12334445669999999999999985 5668899999999999999999999999997 4445 5778999
Q ss_pred HHHHHHhcCchhH-HHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHH
Q 037713 413 LLSACKHHRNTEM-GTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKV 463 (610)
Q Consensus 413 ll~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 463 (610)
++..+...|+.++ +.++++++++++|+++. +.+...+.+.++++..-
T Consensus 240 l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~----~~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 240 LVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF----IKEYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCCCChH----HHHHHHHHHHHHHHHHH
Confidence 9999999999875 67899999999999873 45667777777776543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.76 E-value=6.1e-15 Score=162.49 Aligned_cols=379 Identities=12% Similarity=0.076 Sum_probs=290.2
Q ss_pred CCchHHHHHHHhhcCCChHHHHHHHccCC-CC-----CcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHH
Q 037713 37 YGPLPNTLIDAYGKCDLVQYAHHLLEEMP-QR-----DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFAS 110 (610)
Q Consensus 37 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~-~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ 110 (610)
++.--...+..|...|.+.+|.++++++. +| +...-|.++.+..+. +..+..+..++... ....-
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~--------~d~~e 1054 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN--------YDAPD 1054 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh--------ccHHH
Confidence 33344566778888888888888888765 22 224456666666666 44555555554432 11333
Q ss_pred HHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHH
Q 037713 111 LVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDA 190 (610)
Q Consensus 111 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 190 (610)
+...|...|.+++|..+|++.. ......+.+ +-..|++++|.++.++. .+..+|..+..++.+.|++++|
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHH
Confidence 6667788899999999998852 111222223 23788999999999977 4578899999999999999999
Q ss_pred HHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCC
Q 037713 191 MEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYE 270 (610)
Q Consensus 191 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 270 (610)
...|.+. .|...|..++..+.+.|++++|++.|...++.. +++...+.++.+|++.++++....+. + .
T Consensus 1125 IdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~---~e~~Idt~LafaYAKl~rleele~fI----~---~ 1192 (1630)
T 1xi4_A 1125 IDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA---RESYVETELIFALAKTNRLAELEEFI----N---G 1192 (1630)
T ss_pred HHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc---ccccccHHHHHHHHhhcCHHHHHHHH----h---C
Confidence 9999774 678889999999999999999999999888765 33333335888999999888655443 2 3
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 037713 271 SCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACS 350 (610)
Q Consensus 271 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 350 (610)
++...+..+.+.|...|++++|..+|... ..|..+...|.+.|++++|.+.+++. -+..+|..+-.+|.
T Consensus 1193 ~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acv 1261 (1630)
T 1xi4_A 1193 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACV 1261 (1630)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHh
Confidence 45667778999999999999999999985 58999999999999999999999977 36789999999999
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHh--cCchhHH
Q 037713 351 HVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD-EPTWAALLSACKH--HRNTEMG 426 (610)
Q Consensus 351 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~--~g~~~~a 426 (610)
..|++..|...... +..+...+..++..|.+.|.+++|..+++.. +..|. ...|.-|...+++ .++..++
T Consensus 1262 e~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEh 1335 (1630)
T 1xi4_A 1262 DGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREH 1335 (1630)
T ss_pred hhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999887553 3345778889999999999999999999877 65554 3455555555554 4567777
Q ss_pred HHHHHHHhcCCC-----CCCcchHhHHHHhhhhcchhHHHHH
Q 037713 427 TRVANHLLSLKP-----EDPSSYILLSNVYASAAMWQHVSKV 463 (610)
Q Consensus 427 ~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~a~~~ 463 (610)
.+.|..-..+.| .+...|..++.+|.+.|.|+.|...
T Consensus 1336 lk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1336 LELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 777777666655 5667888999999999999999853
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.76 E-value=7.6e-15 Score=154.01 Aligned_cols=363 Identities=10% Similarity=-0.018 Sum_probs=303.4
Q ss_pred HHHHHHHHhHHCCCCCCChhhHHHHHHHHhc----cCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHh----CCChHH
Q 037713 87 KTISIFSTMLALDKLQPDHFVFASLVKACGS----LGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAK----CGLPNN 158 (610)
Q Consensus 87 ~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~ 158 (610)
.+++.+....+.| |...+..+...+.. .++++.|...+....+.| +...+..|...|.. .++.++
T Consensus 25 ~~~~~~~~~a~~g----~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~ 97 (490)
T 2xm6_A 25 VNLEQLKQKAESG----EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQ 97 (490)
T ss_dssp CCHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 3456666665554 66777777777776 789999999999999875 56788889999999 999999
Q ss_pred HHHHHHhcCCC-ChhhHHHHHHHHHh----cCCHHHHHHHHhhCCCC-ChhhHHHHHHHHHh----CCChHHHHHHHHHH
Q 037713 159 ARAVFDSIKLK-NSVSWTAMLSAYAR----SGRKKDAMEIFEQAPVR-NLFLWTALVSGLVQ----SRNEIDAFYSFIEM 228 (610)
Q Consensus 159 A~~~~~~m~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m 228 (610)
|.+.|++..+. +...+..|...|.. .+++++|...|++.... +..++..+...|.. .+++++|++.|++.
T Consensus 98 A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a 177 (490)
T 2xm6_A 98 AVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKA 177 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 99999988744 77888889899988 89999999999986544 66788888888887 88999999999999
Q ss_pred HHcCCCCCCHhHHHHHHHHHhc----cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhcC
Q 037713 229 RREGVDIVDPLVLSSIVGACAN----FAVLELGKQIHGLVIALGYESCLFISNAIVDMYAK----CSDIIAAKDIFGRMR 300 (610)
Q Consensus 229 ~~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~ 300 (610)
.+.+ +...+..+...+.. .++.++|...+....+.+ +...+..|..+|.. .+++++|...|++..
T Consensus 178 ~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~ 250 (490)
T 2xm6_A 178 AEQG----NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSA 250 (490)
T ss_dssp HHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHCC----CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 8864 56677777777777 899999999999999876 56678888899987 889999999999886
Q ss_pred C-CChhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-----CCHHHHHHHHHHhHHhcC
Q 037713 301 R-KDVVSWTSIIVGTAQ----HGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHV-----GLVGKGRKLFKSMIEDYG 370 (610)
Q Consensus 301 ~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~ 370 (610)
+ .+..++..+...|.. .++.++|+.+|++..+.| +...+..+...+... +++++|..+|+...+.
T Consensus 251 ~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-- 325 (490)
T 2xm6_A 251 EQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-- 325 (490)
T ss_dssp TTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--
T ss_pred HCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--
Confidence 5 467788888888888 899999999999998764 456677777778777 8999999999999873
Q ss_pred CCCCHHHHHHHHHHHHhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCchhHHHHHHHHHhcCCCCCCcc
Q 037713 371 ITPSLQHYTCLLDLLSRSG---HLDEAENLIKAMPFEPDEPTWAALLSACKH----HRNTEMGTRVANHLLSLKPEDPSS 443 (610)
Q Consensus 371 ~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~ 443 (610)
.+...+..|..+|.+.| ++++|.+.|++.-...+...+..|...|.. .+++++|...++++.+.+ ++.+
T Consensus 326 --~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a 401 (490)
T 2xm6_A 326 --GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAA 401 (490)
T ss_dssp --TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHH
T ss_pred --CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHH
Confidence 34567888888888867 889999999988223578888889888888 899999999999998865 4678
Q ss_pred hHhHHHHhhh----hcchhHHHHHHHHHhhCCC
Q 037713 444 YILLSNVYAS----AAMWQHVSKVRKLMSVMEV 472 (610)
Q Consensus 444 ~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 472 (610)
+..|+.+|.. .+++++|.+.++...+.+.
T Consensus 402 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 402 QVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 9999999998 8999999999999887663
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.9e-17 Score=162.95 Aligned_cols=345 Identities=12% Similarity=0.082 Sum_probs=174.7
Q ss_pred ccCChHHHHHHHHHHHHhCCCCCCchHHHHHHHhhcCCChHHHHHHHccCCCCCcchHHHHHHHHHcCCCchHHHHHHHH
Q 037713 15 RHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFST 94 (610)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 94 (610)
..+++++|.+..+.+ +++.+|+.|..++.+.|++++|.+.|.+. +|...|..++.++.+.|++++|+..++.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 456688888888877 34569999999999999999999999764 5777999999999999999999997776
Q ss_pred hHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhH
Q 037713 95 MLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSW 174 (610)
Q Consensus 95 m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 174 (610)
.++. .|++.+.+.++.++.+.|+++++.+++. .|+..+|+.+.+.|...|++++|...|..+ ..|
T Consensus 87 ark~---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~ 151 (449)
T 1b89_A 87 ARKK---ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCH
T ss_pred HHHh---CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhH
Confidence 6662 4567889999999999999999888874 477789999999999999999999999988 489
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccH
Q 037713 175 TAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVL 254 (610)
Q Consensus 175 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~ 254 (610)
..++.++.+.|++++|.+.+.++ .++.+|..++.+|+..|+++.|...... +. .++.-...++..|.+.|.+
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~-~~ad~l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IV-VHADELEELINYYQDRGYF 223 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HH-hCHhhHHHHHHHHHHCCCH
Confidence 99999999999999999999998 4899999999999999999999665554 22 3444456788999999999
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc--CCHHHHHHHHHhcCC--------CChhHHHHHHHHHHhcCChHHHH
Q 037713 255 ELGKQIHGLVIALGYESCLFISNAIVDMYAKC--SDIIAAKDIFGRMRR--------KDVVSWTSIIVGTAQHGQAEETL 324 (610)
Q Consensus 255 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~--g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~ 324 (610)
+++..+++...... +....+++-|.-+|++- +++.+..+.|..-.. .+...|..+.-.|.+.++++.|.
T Consensus 224 eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~ 302 (449)
T 1b89_A 224 EELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 302 (449)
T ss_dssp HHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 99999999988665 55678888888888875 578888888875442 25678999999999999999998
Q ss_pred HHHHHHHHc-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 037713 325 ALYDEMVSA-GVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMP 402 (610)
Q Consensus 325 ~l~~~m~~~-g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 402 (610)
.. |.+. ....+...|.-++. +..+.+--.+...-.... .|. ..+-|+.++...=+...+..+|++.+
T Consensus 303 ~t---m~~h~~~a~~~~~f~~~~~---kv~n~elyYkai~fyl~~---~p~--~l~~ll~~l~~~ld~~r~v~~~~~~~ 370 (449)
T 1b89_A 303 IT---MMNHPTDAWKEGQFKDIIT---KVANVELYYRAIQFYLEF---KPL--LLNDLLMVLSPRLDHTRAVNYFSKVK 370 (449)
T ss_dssp HH---HHHSTTTTCCHHHHHHHHH---HCSSTHHHHHHHHHHHHH---CGG--GHHHHHHHHGGGCCHHHHHHHHHHTT
T ss_pred HH---HHhCChhhhhhHHHHHHHh---chhHHHHHHHHHHHHHhc---CHH--HHHHHHHHHHhccCcHHHHHHHHHcC
Confidence 74 5443 23344555555443 334433322222222221 233 35566666666666667777776664
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.3e-16 Score=158.82 Aligned_cols=253 Identities=13% Similarity=0.025 Sum_probs=120.9
Q ss_pred CCCchHHHH-HHHHhHHCCCCCC--ChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHH
Q 037713 82 ANLPQKTIS-IFSTMLALDKLQP--DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNN 158 (610)
Q Consensus 82 ~g~~~~A~~-~~~~m~~~~~~~p--d~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 158 (610)
.|++++|++ .|++......-.| +...+..+...+...|++++|...++.+++.. +.+..++..+...|.+.|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 356666666 6665544221111 23445556666666666666666666666654 4455566666666666666666
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCH
Q 037713 159 ARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDP 238 (610)
Q Consensus 159 A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~ 238 (610)
|...|+++... ...+..+|..+...|...|++++|++.|+++...... +.
T Consensus 117 A~~~~~~al~~----------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~ 166 (368)
T 1fch_A 117 AISALRRCLEL----------------------------KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA--YA 166 (368)
T ss_dssp HHHHHHHHHHH----------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT--TG
T ss_pred HHHHHHHHHhc----------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--cH
Confidence 66665543210 1224455566666666666666666666666665422 11
Q ss_pred hHHHH---------------HHHHHhccccHHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhcCC-
Q 037713 239 LVLSS---------------IVGACANFAVLELGKQIHGLVIALGYES-CLFISNAIVDMYAKCSDIIAAKDIFGRMRR- 301 (610)
Q Consensus 239 ~t~~~---------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~- 301 (610)
..+.. .+..+...|+++.|...+..+.+..... +..++..+...|.+.|++++|...|+++.+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 246 (368)
T 1fch_A 167 HLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV 246 (368)
T ss_dssp GGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11111 1222224555555555555555443211 344444455555555555555555544431
Q ss_pred --CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 037713 302 --KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI 366 (610)
Q Consensus 302 --~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 366 (610)
.+..+|..+...+...|++++|+..|+++.+.. +.+..++..+..++.+.|++++|...|+.+.
T Consensus 247 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 312 (368)
T 1fch_A 247 RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEAL 312 (368)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 233444444445555555555555555444431 1233444444444444455555444444443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.2e-15 Score=155.18 Aligned_cols=371 Identities=9% Similarity=-0.041 Sum_probs=194.9
Q ss_pred cchHHHHHHHHHcCCCchHHHHHHHHhHHC-----C-CCCC-ChhhHHHHHHHHhccCCcHHHHHHHHHHHhcC------
Q 037713 69 HVSWASILTAYNQANLPQKTISIFSTMLAL-----D-KLQP-DHFVFASLVKACGSLGATRLGKQVHACFVLSP------ 135 (610)
Q Consensus 69 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~~p-d~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g------ 135 (610)
...||.|...+...|++++|++.|++..+. + ...| ...+|..+..++...|++++|...++++.+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 445777777777777777777777765431 0 0122 23456666666667777777776666655421
Q ss_pred CC-CChhHHHHHHHHHHhC--CChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHH-
Q 037713 136 FC-DDDVVKSSLVDMYAKC--GLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSG- 211 (610)
Q Consensus 136 ~~-~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~- 211 (610)
.. ....+++.+..++.+. +++++|...|++..+. ...++..+..+...
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~----------------------------~p~~~~~~~~~~~~~ 182 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK----------------------------KPKNPEFTSGLAIAS 182 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH----------------------------STTCHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh----------------------------CCCCHHHHHHHHHHH
Confidence 01 1123333333333332 3455555555544310 01122233332222
Q ss_pred --HHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhc----cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 037713 212 --LVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACAN----FAVLELGKQIHGLVIALGYESCLFISNAIVDMYAK 285 (610)
Q Consensus 212 --~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 285 (610)
+...++.++|++.|++..+... .+...+..+...+.. .++.+.|...++.+.+.. +.+..++..+...|.+
T Consensus 183 ~~l~~~~~~~~al~~~~~al~l~p--~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~ 259 (472)
T 4g1t_A 183 YRLDNWPPSQNAIDPLRQAIRLNP--DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRR 259 (472)
T ss_dssp HHHHHSCCCCCTHHHHHHHHHHCS--SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHH
T ss_pred HHhcCchHHHHHHHHHHHHhhcCC--cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHH
Confidence 2234445555555555554431 333344333333322 234445555555555443 2334455555555555
Q ss_pred cCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHh-------------------cCChHHHHHHHHHHHHcCCCCCHHHHH
Q 037713 286 CSDIIAAKDIFGRMRR--K-DVVSWTSIIVGTAQ-------------------HGQAEETLALYDEMVSAGVKPNEVTFV 343 (610)
Q Consensus 286 ~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~-------------------~g~~~~A~~l~~~m~~~g~~p~~~t~~ 343 (610)
.|++++|...|++..+ | +..+|..+...|.. .+..++|...|++..+... .+..++.
T Consensus 260 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~ 338 (472)
T 4g1t_A 260 KDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCS 338 (472)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHH
T ss_pred cCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhh
Confidence 6666666555555432 2 33444444433321 2345678888888776532 2455677
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCCCH--HHHHHHHH-HHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh
Q 037713 344 GLIYACSHVGLVGKGRKLFKSMIEDYGITPSL--QHYTCLLD-LLSRSGHLDEAENLIKAM-PFEPDEPTWAALLSACKH 419 (610)
Q Consensus 344 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~-~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~ 419 (610)
.+...+...|++++|...|++..+. ...|.. ..+..+.. .+...|+.++|...|++. .+.|+...+...
T Consensus 339 ~lg~~~~~~~~~~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~------ 411 (472)
T 4g1t_A 339 ILASLHALADQYEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM------ 411 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH------
T ss_pred hHHHHHHHhccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH------
Confidence 7888999999999999999988763 222221 12333332 245779999999999887 666765443322
Q ss_pred cCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhCCCccCCcccEE
Q 037713 420 HRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYI 481 (610)
Q Consensus 420 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~ 481 (610)
.+.+..++++.++.+|+++.+|..|+.+|...|++++|.+.+++..+.+-..+...+|+
T Consensus 412 ---~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 412 ---KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp ---HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred ---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 34556778888899999999999999999999999999999999877655444444543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.72 E-value=4.1e-16 Score=154.02 Aligned_cols=259 Identities=9% Similarity=-0.082 Sum_probs=193.3
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 037713 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDM 282 (610)
Q Consensus 203 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 282 (610)
..|..+...+...|++++|+.+|+++.+... .+...+..+..++...|+++.|...++.+.+.. +.+..++..+...
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAP--EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 3455555666666666666666666665542 355566666666666666666666666666653 3345566666777
Q ss_pred HHhcCCHHHHHHHHHhcCC--C-ChhHHHHH--------------HH-HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 037713 283 YAKCSDIIAAKDIFGRMRR--K-DVVSWTSI--------------IV-GTAQHGQAEETLALYDEMVSAGVKPNEVTFVG 344 (610)
Q Consensus 283 y~~~g~~~~A~~~~~~~~~--~-~~~~~~~l--------------i~-~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 344 (610)
|...|++++|.+.|+++.+ | +...+..+ .. .+...|++++|...++++.+... .+..++..
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 177 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQLHAS 177 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST-TCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHHHHH
Confidence 7777777777777766543 1 22222222 22 36778899999999999988643 36788899
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCc
Q 037713 345 LIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRN 422 (610)
Q Consensus 345 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~ 422 (610)
+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|+
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence 999999999999999999999874 3456788999999999999999999999987 3334 57888999999999999
Q ss_pred hhHHHHHHHHHhcCCCC------------CCcchHhHHHHhhhhcchhHHHHHHHHH
Q 037713 423 TEMGTRVANHLLSLKPE------------DPSSYILLSNVYASAAMWQHVSKVRKLM 467 (610)
Q Consensus 423 ~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 467 (610)
+++|...++++++..|. ++..+..++.+|...|++++|..+++..
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999999888 6788999999999999999999887643
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.71 E-value=3e-16 Score=158.04 Aligned_cols=156 Identities=13% Similarity=0.040 Sum_probs=93.7
Q ss_pred HHHHhccccHHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCCh
Q 037713 245 VGACANFAVLELGKQIHGLVIALGYE-SCLFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQA 320 (610)
Q Consensus 245 l~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 320 (610)
...+...|++++|...++.+.+.... .+..++..+...|.+.|++++|...|++..+ .+..+|+.+...|...|++
T Consensus 184 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 263 (365)
T 4eqf_A 184 SKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRS 263 (365)
T ss_dssp -----CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 34444445555555555544444311 1345555566666666666666666665542 3456677777777777777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC----------CCCHHHHHHHHHHHHhcCC
Q 037713 321 EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGI----------TPSLQHYTCLLDLLSRSGH 390 (610)
Q Consensus 321 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~----------~~~~~~~~~li~~~~~~g~ 390 (610)
++|+..|++..+.. +.+..++..+..+|...|++++|...|+.+.+...- ..+...|..+..++...|+
T Consensus 264 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 342 (365)
T 4eqf_A 264 EEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQ 342 (365)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCc
Confidence 77777777776642 224666777777777777777777777776653211 0125678888888888888
Q ss_pred HHHHHHHHHhC
Q 037713 391 LDEAENLIKAM 401 (610)
Q Consensus 391 ~~~A~~~~~~m 401 (610)
.+.|..+.++-
T Consensus 343 ~~~a~~~~~~~ 353 (365)
T 4eqf_A 343 PELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHhh
Confidence 88888877653
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.7e-17 Score=177.23 Aligned_cols=132 Identities=12% Similarity=0.154 Sum_probs=117.8
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-------CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 037713 269 YESCLFISNAIVDMYAKCSDIIAAKDIFGRMR-------RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341 (610)
Q Consensus 269 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 341 (610)
...-..+||+||++|+++|++++|.++|++|. .||++|||+||.+|++.|+.++|.++|++|.+.|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 34456789999999999999999999997764 58999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCC-HHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037713 342 FVGLIYACSHVGL-VGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401 (610)
Q Consensus 342 ~~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 401 (610)
|++||.++++.|. .++|.++|++|.++ |+.||..+|++++....+.+-++...++...+
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 9999999999998 57899999999996 99999999999999888876666665554444
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-15 Score=147.40 Aligned_cols=245 Identities=10% Similarity=-0.029 Sum_probs=202.2
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCCH--hHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 037713 209 VSGLVQSRNEIDAFYSFIEMRREGVDIVDP--LVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKC 286 (610)
Q Consensus 209 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 286 (610)
|.-....|++++|+..++...... |+. .....+..++...|+++.|...++. .-+|+...+..+...|...
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~---p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSS---PERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASH 78 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCS---HHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHhcccCC---chhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCC
Confidence 445677899999999888764433 443 3556778899999999999876543 2466788889999999999
Q ss_pred CCHHHHHHHHHhcC----CC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 037713 287 SDIIAAKDIFGRMR----RK-DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL 361 (610)
Q Consensus 287 g~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 361 (610)
|+.++|.+.++++. .| +...+..+...+.+.|++++|++.+++ +.+...+..+...+.+.|++++|.+.
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999874 24 567788888999999999999999987 46788899999999999999999999
Q ss_pred HHHhHHhcCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcC
Q 037713 362 FKSMIEDYGITPSLQ---HYTCLLDLLSRSGHLDEAENLIKAM--PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSL 436 (610)
Q Consensus 362 ~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 436 (610)
++.+.+. .|+.. ....++..+...|++++|..+|+++ ..+++...|+.+..++...|++++|+..++++++.
T Consensus 153 l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 153 LKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999875 35432 1233445555679999999999998 33457888999999999999999999999999999
Q ss_pred CCCCCcchHhHHHHhhhhcchhH-HHHHHHHHhh
Q 037713 437 KPEDPSSYILLSNVYASAAMWQH-VSKVRKLMSV 469 (610)
Q Consensus 437 ~p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~ 469 (610)
+|+++.++..++.++...|++++ +.++++.+.+
T Consensus 230 ~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 230 DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999986 5678877764
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-14 Score=143.39 Aligned_cols=259 Identities=11% Similarity=-0.001 Sum_probs=129.9
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCH
Q 037713 108 FASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRK 187 (610)
Q Consensus 108 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~ 187 (610)
+..+...+...|++++|..+++.+++.. +.+..++..+...|.+.|++++|...|+++.+
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~------------------- 83 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARM------------------- 83 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------------------
Confidence 4444444555555555555555555443 33444444455555555555544444443321
Q ss_pred HHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHH--------------HH-HHhccc
Q 037713 188 KDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSI--------------VG-ACANFA 252 (610)
Q Consensus 188 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~l--------------l~-~~~~~~ 252 (610)
....+..+|..+...|...|++++|++.|+++.+... .+...+..+ .. .+...|
T Consensus 84 ---------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (327)
T 3cv0_A 84 ---------LDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP--QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPN 152 (327)
T ss_dssp ---------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST--TTTTC--------------------CCTTSHH
T ss_pred ---------cCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcc
Confidence 0122445666666667777777777777777666542 122222222 11 245556
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHH
Q 037713 253 VLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDE 329 (610)
Q Consensus 253 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~ 329 (610)
+++.|...++.+.+.. +.+..++..+...|.+.|++++|...|+++.+ .+..+|..+...+...|++++|...|++
T Consensus 153 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 231 (327)
T 3cv0_A 153 EYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNR 231 (327)
T ss_dssp HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6666666666665543 22445555555555556666666555555432 2344555555555555555555555555
Q ss_pred HHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHH
Q 037713 330 MVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP-----------SLQHYTCLLDLLSRSGHLDEAENLI 398 (610)
Q Consensus 330 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~ 398 (610)
+.+.. +.+..++..+..++...|++++|.+.++.+.+... .. +...|..+..+|.+.|++++|..++
T Consensus 232 a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 309 (327)
T 3cv0_A 232 ALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQV-GGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTY 309 (327)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT-TSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHT
T ss_pred HHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 55432 12344555555555555555555555555544210 00 2344455555555555555555554
Q ss_pred Hh
Q 037713 399 KA 400 (610)
Q Consensus 399 ~~ 400 (610)
++
T Consensus 310 ~~ 311 (327)
T 3cv0_A 310 AQ 311 (327)
T ss_dssp TC
T ss_pred HH
Confidence 43
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=1e-14 Score=152.32 Aligned_cols=382 Identities=9% Similarity=-0.056 Sum_probs=234.0
Q ss_pred CCCchHHHHHHHhhcCCChHHHHHHHccCC-----------CC-CcchHHHHHHHHHcCCCchHHHHHHHHhHHC-----
Q 037713 36 QYGPLPNTLIDAYGKCDLVQYAHHLLEEMP-----------QR-DHVSWASILTAYNQANLPQKTISIFSTMLAL----- 98 (610)
Q Consensus 36 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~-----------~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----- 98 (610)
....+||.|...|...|+.++|++.|++.. .| ..++|+.+...|...|++++|...|++..+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 345679999999999999999999987642 22 4568999999999999999999999887642
Q ss_pred CCCCC-ChhhHHHHHHHHhc--cCCcHHHHHHHHHHHhcCCCCChhHHHHHHHH---HHhCCChHHHHHHHHhcC---CC
Q 037713 99 DKLQP-DHFVFASLVKACGS--LGATRLGKQVHACFVLSPFCDDDVVKSSLVDM---YAKCGLPNNARAVFDSIK---LK 169 (610)
Q Consensus 99 ~~~~p-d~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~---~~ 169 (610)
+...+ ...++.....++.. .+++++|...|+++++.. |.+...+..+..+ +...++.++|.+.|++.. ..
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~ 207 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence 10122 23455555444443 457899999999999875 4456666666555 445677888888887654 33
Q ss_pred ChhhHHHHHHHHHh----cCCHHHHHHHHhhCC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHH
Q 037713 170 NSVSWTAMLSAYAR----SGRKKDAMEIFEQAP---VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLS 242 (610)
Q Consensus 170 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~ 242 (610)
+..++..+...+.. .|+.++|.+.+++.. ..+...+..+...|...|++++|++.|++..+..+ .+...+.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP--NNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC--ChHHHHH
Confidence 55666666555544 456778888887653 34567788888899999999999999998887652 4555555
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCC
Q 037713 243 SIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR---RKDVVSWTSIIVGTAQHGQ 319 (610)
Q Consensus 243 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~ 319 (610)
.+..++...+....+.. ...........+..+.|...|++.. ..+..+|..+...|...|+
T Consensus 286 ~lg~~y~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~ 349 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLR----------------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQ 349 (472)
T ss_dssp HHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhhHH----------------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhcc
Confidence 55544432211111000 0001111111233567777777654 2456788889999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHH--HHHHHHH-HHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037713 320 AEETLALYDEMVSAGVKPNEV--TFVGLIY-ACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAEN 396 (610)
Q Consensus 320 ~~~A~~l~~~m~~~g~~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 396 (610)
+++|+..|++..+....|... .+..+.. ...+.|+.++|+..|.+..+ +.|+........ ..+.+
T Consensus 350 ~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~~---------~~l~~ 417 (472)
T 4g1t_A 350 YEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMK---------DKLQK 417 (472)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHHH---------HHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHH---------HHHHH
Confidence 999999999998865443321 2222222 34578999999999998876 455543322222 23333
Q ss_pred HHHhC-CCC-CCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHH
Q 037713 397 LIKAM-PFE-PDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLS 448 (610)
Q Consensus 397 ~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 448 (610)
++++. ... .+..+|..|...+...|++++|++.|+++++++|.+|.+...++
T Consensus 418 ~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 418 IAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 44433 222 35678999999999999999999999999999998887766554
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=6.7e-17 Score=172.69 Aligned_cols=147 Identities=14% Similarity=0.107 Sum_probs=122.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHH
Q 037713 304 VVSWTSIIVGTAQHGQAEETLALYDEMVS---AGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380 (610)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 380 (610)
..+||+||.+|++.|+.++|.++|++|.+ .|+.||.+|||+||.+|++.|++++|.++|++|.+. |+.||..+|++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~-G~~PDvvTYnt 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA-GLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCcHHHHHH
Confidence 46899999999999999999999988764 589999999999999999999999999999999886 99999999999
Q ss_pred HHHHHHhcCCH-HHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHh-cCCCC-----CCcchHhHHHH
Q 037713 381 LLDLLSRSGHL-DEAENLIKAM---PFEPDEPTWAALLSACKHHRNTEMGTRVANHLL-SLKPE-----DPSSYILLSNV 450 (610)
Q Consensus 381 li~~~~~~g~~-~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~p~-----~~~~~~~l~~~ 450 (610)
||+++++.|+. ++|.++|++| ++.||..+|++++.++.+.+ .++..+++. +..|+ ...+...|.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKVKPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGGCCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHhCcccCCCCCCcccccchHHHHHH
Confidence 99999999985 7899999999 99999999999997665443 333333332 22221 13345578888
Q ss_pred hhhhc
Q 037713 451 YASAA 455 (610)
Q Consensus 451 ~~~~g 455 (610)
|++.+
T Consensus 282 ~s~d~ 286 (1134)
T 3spa_A 282 YAKDG 286 (1134)
T ss_dssp HCCCS
T ss_pred HccCC
Confidence 88765
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.60 E-value=7.9e-14 Score=132.34 Aligned_cols=216 Identities=9% Similarity=-0.030 Sum_probs=153.3
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C----C----hhHHHHH
Q 037713 241 LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR--K----D----VVSWTSI 310 (610)
Q Consensus 241 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~----~----~~~~~~l 310 (610)
+..+...+...|+++.|...+..+.+.. .+..++..+...|...|++++|...|++..+ | + ..+|..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3334444444444444444444444444 3445555666666666666666666665542 1 1 4677778
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCC
Q 037713 311 IVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGH 390 (610)
Q Consensus 311 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 390 (610)
...|...|++++|+..|++..+. .|+.. .+...|++++|...++.+.+ ..+.+...+..+...|.+.|+
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~--~~~~~-------~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTE--HRTAD-------ILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCCHH-------HHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcccHHHHHHHHHHHHhc--CchhH-------HHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcC
Confidence 88888888888888888888774 34432 34556778888888888766 233345778888888888899
Q ss_pred HHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHh
Q 037713 391 LDEAENLIKAM-PFE-PDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMS 468 (610)
Q Consensus 391 ~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 468 (610)
+++|...+++. ... .+..+|..+...+...|++++|...++++++.+|+++..+..++.+|...|++++|.+.++...
T Consensus 155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99998888887 323 3577788888888899999999999999998889888888899999999999999998888775
Q ss_pred h
Q 037713 469 V 469 (610)
Q Consensus 469 ~ 469 (610)
+
T Consensus 235 ~ 235 (258)
T 3uq3_A 235 T 235 (258)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.2e-14 Score=130.83 Aligned_cols=195 Identities=12% Similarity=0.007 Sum_probs=155.5
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037713 270 ESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLI 346 (610)
Q Consensus 270 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 346 (610)
+++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+... .+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHH
Confidence 45667778888888899999999999988754 3678888899999999999999999999888632 2567888888
Q ss_pred HHHhcc-----------CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 037713 347 YACSHV-----------GLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPDEPTWAALL 414 (610)
Q Consensus 347 ~a~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll 414 (610)
.++... |++++|...+++..+. -+.+...+..+..+|...|++++|...|++. .+..+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence 888888 9999999999999874 3345788999999999999999999999987 2226888999999
Q ss_pred HHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHH
Q 037713 415 SACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLM 467 (610)
Q Consensus 415 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 467 (610)
..+...|++++|+..++++++.+|+++..+..++.++...|++++|.+.++..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887764
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-13 Score=132.87 Aligned_cols=242 Identities=7% Similarity=-0.055 Sum_probs=183.7
Q ss_pred hCCChHHHHHHHHHHHHcCCC--CCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 037713 214 QSRNEIDAFYSFIEMRREGVD--IVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIA 291 (610)
Q Consensus 214 ~~g~~~~A~~~~~~m~~~~~~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 291 (610)
..|++++|+..|+++.+.... |.+...+..+...+...|+++.|...+..+.+.. +.+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 346777888888877765321 1245667777777788888888888888877764 3467788888888888999999
Q ss_pred HHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 037713 292 AKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368 (610)
Q Consensus 292 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 368 (610)
|...|++..+ .+..+|..+...|...|++++|...|+++.+. .|+.......+..+...|++++|...+......
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9988888763 36788999999999999999999999999885 455444455555667779999999999888774
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCc
Q 037713 369 YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD-----EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442 (610)
Q Consensus 369 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 442 (610)
.+++...+. ++..+...++.++|.+.+++. ...|+ ...|..+...+...|++++|...++++++.+|++..
T Consensus 174 --~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 344444444 777788888899999999887 33332 577888899999999999999999999999997644
Q ss_pred chHhHHHHhhhhcchhHHHHHH
Q 037713 443 SYILLSNVYASAAMWQHVSKVR 464 (610)
Q Consensus 443 ~~~~l~~~~~~~g~~~~a~~~~ 464 (610)
....++...|++++|.+.+
T Consensus 251 ---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 ---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp ---HHHHHHHHHHHHHHC----
T ss_pred ---HHHHHHHHHHHHHhhHHHH
Confidence 3466788889999987765
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.58 E-value=6.5e-14 Score=132.90 Aligned_cols=233 Identities=11% Similarity=-0.039 Sum_probs=164.4
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCC--Cc----hhHHH
Q 037713 204 LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYE--SC----LFISN 277 (610)
Q Consensus 204 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~ 277 (610)
.|..+...+...|++++|+..|++..+.. ++...+..+..++...|+++.|...+..+.+.... ++ ..++.
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 45556666666666666666666666655 34556666666666666666666666666554211 11 46677
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 037713 278 AIVDMYAKCSDIIAAKDIFGRMRR--KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLV 355 (610)
Q Consensus 278 ~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 355 (610)
.+...|.+.|++++|...|++..+ ++. ..+...|++++|...++++.... +.+...+..+...+...|++
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCH
Confidence 777778888888888888777653 332 34556677888888888887752 22456677788888888888
Q ss_pred HHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 037713 356 GKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHL 433 (610)
Q Consensus 356 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 433 (610)
++|...++.+.+. .+.+...|..+...|.+.|++++|...+++. ...| +...|..+...+...|++++|...++++
T Consensus 156 ~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 156 PNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 8888888888774 3446778888888888999999998888877 3334 4777888888899999999999999999
Q ss_pred hcCC------CCCCcchHhHHH
Q 037713 434 LSLK------PEDPSSYILLSN 449 (610)
Q Consensus 434 ~~~~------p~~~~~~~~l~~ 449 (610)
+++. |++...+..+..
T Consensus 234 ~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 234 RTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHhChhhcCCCchHHHHHHHHH
Confidence 8887 766555544443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.7e-13 Score=131.32 Aligned_cols=241 Identities=10% Similarity=-0.021 Sum_probs=125.9
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhc
Q 037713 209 VSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESC--LFISNAIVDMYAKC 286 (610)
Q Consensus 209 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~y~~~ 286 (610)
...+...|++++|+..|++..+... .+...+..+..++...|+++.|...+..+.+.+..++ ...+..+...|.+.
T Consensus 10 a~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~ 87 (272)
T 3u4t_A 10 ADFLFKNNNYAEAIEVFNKLEAKKY--NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK 87 (272)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHTTC--CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence 3344444444444444444444331 2223344444444444444444444444444221111 12244555555555
Q ss_pred CCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 037713 287 SDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFK 363 (610)
Q Consensus 287 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 363 (610)
|++++|...|++..+ .+..+|..+...|...|++++|+..|++..+.. +.+...+..+...+...+++++|.+.|+
T Consensus 88 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 166 (272)
T 3u4t_A 88 GQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFV 166 (272)
T ss_dssp TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555432 234555555566666666666666665555431 1234444444423333346666666666
Q ss_pred HhHHhcCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHhC----CCCCC------HHHHHHHHHHHHhcCchhHHHHHH
Q 037713 364 SMIEDYGITPSLQHYTCLLDLLSRSGH---LDEAENLIKAM----PFEPD------EPTWAALLSACKHHRNTEMGTRVA 430 (610)
Q Consensus 364 ~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m----~~~p~------~~~~~~ll~~~~~~g~~~~a~~~~ 430 (610)
.+.+. .+.+...+..+...+...|+ +++|...+++. ...|+ ...|..+...|...|++++|...+
T Consensus 167 ~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 244 (272)
T 3u4t_A 167 KVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAW 244 (272)
T ss_dssp HHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66553 22234555556666665565 55555555444 11133 246677778888999999999999
Q ss_pred HHHhcCCCCCCcchHhHHHHhhhh
Q 037713 431 NHLLSLKPEDPSSYILLSNVYASA 454 (610)
Q Consensus 431 ~~~~~~~p~~~~~~~~l~~~~~~~ 454 (610)
+++++++|+++.+...+..+....
T Consensus 245 ~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 245 KNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HHHHHHCTTCHHHHHHHC------
T ss_pred HHHHhcCccHHHHHHHhhhhhccc
Confidence 999999999887776666555443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-12 Score=134.96 Aligned_cols=377 Identities=11% Similarity=0.030 Sum_probs=191.5
Q ss_pred hhhhccCChHHHHHHHHHHHHhCCCCCCchHHHHHHHhhcCCCh---HHHHHHHccCCCCCcchHHHHHHHHHcCC----
Q 037713 11 RVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLV---QYAHHLLEEMPQRDHVSWASILTAYNQAN---- 83 (610)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~f~~m~~~~~~~~~~li~~~~~~g---- 83 (610)
....+.|+++.|.+++....+.| ++..+..|-.+|...|+. ++|.+.|++..+.+...+..|...+...+
T Consensus 11 ~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~ 87 (452)
T 3e4b_A 11 NEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATE 87 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CCH
T ss_pred HHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCC
Confidence 34455677777777777777665 334445555566666666 77777777666556666666666444444
Q ss_pred -CchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCc---HHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHH
Q 037713 84 -LPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGAT---RLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNA 159 (610)
Q Consensus 84 -~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 159 (610)
++++|+..|++..+.| .| ..+..+...+...+.. ..+.+.+....+.| +......|...|...+.++.
T Consensus 88 ~~~~~A~~~~~~Aa~~g--~~--~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~- 159 (452)
T 3e4b_A 88 AEHHEAESLLKKAFANG--EG--NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQ- 159 (452)
T ss_dssp HHHHHHHHHHHHHHHTT--CS--SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGG-
T ss_pred cCHHHHHHHHHHHHHCC--CH--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCccc-
Confidence 5567777777776655 12 2444444444433322 22333333333333 23344444455554444332
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCC---ChHHHHHHHHHHHHcCCCCC
Q 037713 160 RAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSR---NEIDAFYSFIEMRREGVDIV 236 (610)
Q Consensus 160 ~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~p 236 (610)
..+.+..++......++..+..|...|...| ++++|++.|++..+.|. +
T Consensus 160 --------------------------~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~--~ 211 (452)
T 3e4b_A 160 --------------------------HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT--V 211 (452)
T ss_dssp --------------------------GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC--S
T ss_pred --------------------------CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC--H
Confidence 2344555566655556667777777777777 77788888888777763 4
Q ss_pred CHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHH-H-
Q 037713 237 DPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVG-T- 314 (610)
Q Consensus 237 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~-~- 314 (610)
+...+..+...+.... ...+++++|...|++....+...+..+... |
T Consensus 212 ~a~~~~~Lg~~y~~g~-------------------------------~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~ 260 (452)
T 3e4b_A 212 TAQRVDSVARVLGDAT-------------------------------LGTPDEKTAQALLEKIAPGYPASWVSLAQLLYD 260 (452)
T ss_dssp CHHHHHHHHHHHTCGG-------------------------------GSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-------------------------------CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 4444344444443320 001345555555554442234444444444 2
Q ss_pred -HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC-----CHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHh-
Q 037713 315 -AQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVG-----LVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSR- 387 (610)
Q Consensus 315 -~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~- 387 (610)
...++.++|+.+|++..+.| +...+..|...|. .| ++++|..+|+... ..+...+..|..+|..
T Consensus 261 ~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G 331 (452)
T 3e4b_A 261 FPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRG 331 (452)
T ss_dssp SGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCC
Confidence 34566677777777766654 4445555555554 33 6777777776653 3345666666666655
Q ss_pred ---cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCchhHHHHHHHHHhcCCCCCCcchHhHHHHh--hhhcchh
Q 037713 388 ---SGHLDEAENLIKAMPFEPDEPTWAALLSACKH----HRNTEMGTRVANHLLSLKPEDPSSYILLSNVY--ASAAMWQ 458 (610)
Q Consensus 388 ---~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~ 458 (610)
..++++|...|++.-..-+......|...|.. .++.++|...++++.+.++.+ +...+..+. ...+...
T Consensus 332 ~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l~~~~~~~~~~ 409 (452)
T 3e4b_A 332 YLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLATQLEAPLTPAQRA 409 (452)
T ss_dssp TTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHHHHHHTTCCHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCHHHHH
Confidence 33777777777766212233344445544443 457788888888887766543 333333332 2334555
Q ss_pred HHHHHHHHHh
Q 037713 459 HVSKVRKLMS 468 (610)
Q Consensus 459 ~a~~~~~~m~ 468 (610)
+|.++.+..+
T Consensus 410 ~a~~~~~~~~ 419 (452)
T 3e4b_A 410 EGQRLVQQEL 419 (452)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666655543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.52 E-value=8.7e-13 Score=132.26 Aligned_cols=246 Identities=10% Similarity=0.032 Sum_probs=196.0
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhcccc-HHHHHHHHHHHHHhCCCCchhHHHHHH
Q 037713 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAV-LELGKQIHGLVIALGYESCLFISNAIV 280 (610)
Q Consensus 202 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li 280 (610)
...|+.+...+.+.|++++|++.|++..+.. |-+...|..+..++...|+ +++|...++.+++.. +.+..+|+.+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 3567777788888888888888888888766 2567778888888888886 888888888888875 44677888888
Q ss_pred HHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-cCCHH
Q 037713 281 DMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSH-VGLVG 356 (610)
Q Consensus 281 ~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-~g~~~ 356 (610)
.+|.+.|++++|+..|+++.+ .+..+|..+..++...|++++|+..|+++++.... +...|+.+..++.. .|..+
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 899999999999999988863 47788999999999999999999999999987443 67888888888888 66657
Q ss_pred HH-----HHHHHHhHHhcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC-------
Q 037713 357 KG-----RKLFKSMIEDYGITPSLQHYTCLLDLLSRSG--HLDEAENLIKAMPFEP-DEPTWAALLSACKHHR------- 421 (610)
Q Consensus 357 ~a-----~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~g------- 421 (610)
+| +..|+..++. -+-+...|..+..+|.+.| ++++|.+.++++...| +...+..+...|...|
T Consensus 253 eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 77 4788888763 2345678888888898888 6899999888874445 4667778888887764
Q ss_pred --chhHHHHHHHHH-hcCCCCCCcchHhHHHHhhh
Q 037713 422 --NTEMGTRVANHL-LSLKPEDPSSYILLSNVYAS 453 (610)
Q Consensus 422 --~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 453 (610)
..++|+.+++++ .+++|.....|..++..+..
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 358999999999 89999888888777766643
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.7e-12 Score=119.94 Aligned_cols=193 Identities=12% Similarity=0.009 Sum_probs=104.2
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 037713 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281 (610)
Q Consensus 202 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 281 (610)
...|..+...+.+.|++++|+..|++..+.. |.+...+..+..++.+.|++++|...++.+++.. +.+...+..+..
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKEN--PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 3445555555555666666666666555543 2345555555555555555555555555555543 233445555555
Q ss_pred HHHhc-----------CCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037713 282 MYAKC-----------SDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIY 347 (610)
Q Consensus 282 ~y~~~-----------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 347 (610)
.|.+. |++++|...|++..+ .+...|..+...|...|++++|+..|++..+.. .+...+..+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 55555 666666666665542 245566666666666666666666666666655 45666666666
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037713 348 ACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401 (610)
Q Consensus 348 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 401 (610)
++...|++++|...|+...+. -+.+...+..+..++.+.|++++|.+.+++.
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC--------------
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666666666666666666553 2334556666666666666666666666543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.4e-12 Score=118.16 Aligned_cols=168 Identities=11% Similarity=0.040 Sum_probs=95.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 037713 275 ISNAIVDMYAKCSDIIAAKDIFGRMR---RKDVVSWTSIIVGTAQH-GQAEETLALYDEMVSAGVKPN-EVTFVGLIYAC 349 (610)
Q Consensus 275 ~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~ 349 (610)
++..+...|...|++++|...|+++. ..+..+|..+...+... |++++|+..|+++.+.+..|+ ...+..+..++
T Consensus 44 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 123 (225)
T 2vq2_A 44 AWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICS 123 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHH
Confidence 33344444444444444444444433 12445555566666666 666666666666665222233 44555666666
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC--CCHHHHHHHHHHHHhcCchhHH
Q 037713 350 SHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFE--PDEPTWAALLSACKHHRNTEMG 426 (610)
Q Consensus 350 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~--p~~~~~~~ll~~~~~~g~~~~a 426 (610)
...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ... .+...+..+...+...|+.+.+
T Consensus 124 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 201 (225)
T 2vq2_A 124 AKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAA 201 (225)
T ss_dssp HHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHH
Confidence 6666666666666666553 2234556666666666667777776666665 222 2444555555556666777777
Q ss_pred HHHHHHHhcCCCCCCcch
Q 037713 427 TRVANHLLSLKPEDPSSY 444 (610)
Q Consensus 427 ~~~~~~~~~~~p~~~~~~ 444 (610)
..+++.+.+..|+++...
T Consensus 202 ~~~~~~~~~~~p~~~~~~ 219 (225)
T 2vq2_A 202 YEYEAQLQANFPYSEELQ 219 (225)
T ss_dssp HHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHhCCCCHHHH
Confidence 777777666666665443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.50 E-value=3e-12 Score=121.08 Aligned_cols=206 Identities=11% Similarity=-0.003 Sum_probs=116.2
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 037713 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281 (610)
Q Consensus 202 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 281 (610)
...|..+...+...|++++|++.|+++.+... .+...+..+...+...|++++|...++.+.+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~------------- 101 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP--SSADAHAALAVVFQTEMEPKLADEEYRKALASD------------- 101 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------------
Confidence 45566666667777777777777776665541 334444444444444444444444444433332
Q ss_pred HHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHH
Q 037713 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKP-NEVTFVGLIYACSHVGLVGKGRK 360 (610)
Q Consensus 282 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~ 360 (610)
..+...|..+...|...|++++|+++|+++...+..| +...+..+..++...|++++|..
T Consensus 102 -------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 162 (252)
T 2ho1_A 102 -------------------SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKE 162 (252)
T ss_dssp -------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -------------------cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 1234445555555555566666666666555422233 23445555566666666666666
Q ss_pred HHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCC
Q 037713 361 LFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKP 438 (610)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 438 (610)
.++.+.+. .+.+...+..+...|.+.|++++|...++++ ...| +...+..+...+...|+.++|.+.++++.+..|
T Consensus 163 ~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 163 YFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 66666553 2234556666666666667777776666665 2222 455556666666677777777777777777777
Q ss_pred CCCcc
Q 037713 439 EDPSS 443 (610)
Q Consensus 439 ~~~~~ 443 (610)
+++..
T Consensus 241 ~~~~~ 245 (252)
T 2ho1_A 241 GSLEY 245 (252)
T ss_dssp TSHHH
T ss_pred CCHHH
Confidence 65443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=7e-13 Score=124.60 Aligned_cols=210 Identities=10% Similarity=0.034 Sum_probs=119.3
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 037713 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDM 282 (610)
Q Consensus 203 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 282 (610)
..|..+...+...|++++|+..|+++.+... .+.. ++..+...
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~--~~~~-----------------------------------~~~~la~~ 66 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENK--EDAI-----------------------------------PYINFANL 66 (243)
T ss_dssp ------------------CCTTHHHHHTTCT--TCHH-----------------------------------HHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc--ccHH-----------------------------------HHHHHHHH
Confidence 4455555566666666666666666655331 2333 33344444
Q ss_pred HHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHH
Q 037713 283 YAKCSDIIAAKDIFGRMR---RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGR 359 (610)
Q Consensus 283 y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 359 (610)
|.+.|++++|...|+++. ..+..+|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|.
T Consensus 67 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~ 145 (243)
T 2q7f_A 67 LSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLAL 145 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHH
Confidence 444444444444444433 1245556666666666777777777777766643 224566666777777777777777
Q ss_pred HHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCC
Q 037713 360 KLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFE-PDEPTWAALLSACKHHRNTEMGTRVANHLLSLK 437 (610)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 437 (610)
.+++++.+. .+.+...+..+...|.+.|++++|.+.++++ ... .+..+|..+...+...|++++|...++++++.+
T Consensus 146 ~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 146 PYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 777777653 2345666777777777777777777777766 222 346677777777888888888888888888888
Q ss_pred CCCCcchHhHHHHhh
Q 037713 438 PEDPSSYILLSNVYA 452 (610)
Q Consensus 438 p~~~~~~~~l~~~~~ 452 (610)
|+++..+..+..+..
T Consensus 224 p~~~~~~~~~~~l~~ 238 (243)
T 2q7f_A 224 PDHMLALHAKKLLGH 238 (243)
T ss_dssp TTCHHHHHHHTC---
T ss_pred cchHHHHHHHHHHHh
Confidence 877766665555443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.7e-12 Score=118.80 Aligned_cols=198 Identities=10% Similarity=0.002 Sum_probs=171.9
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037713 271 SCLFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIY 347 (610)
Q Consensus 271 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 347 (610)
.+..++..+...|...|++++|.+.|+++.+ .+...|..+...|...|++++|.+.|++..+.. +.+..++..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 3456778888889999999999999988753 467889999999999999999999999998863 336788899999
Q ss_pred HHhcc-CCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCch
Q 037713 348 ACSHV-GLVGKGRKLFKSMIEDYGITPS-LQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNT 423 (610)
Q Consensus 348 a~~~~-g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~ 423 (610)
.+... |++++|...++.+.+ .+..|+ ...+..+...|.+.|++++|.+.++++ ...| +...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 99999 999999999999987 234443 678899999999999999999999987 3334 478888999999999999
Q ss_pred hHHHHHHHHHhcCCC-CCCcchHhHHHHhhhhcchhHHHHHHHHHhhC
Q 037713 424 EMGTRVANHLLSLKP-EDPSSYILLSNVYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 424 ~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 470 (610)
++|...++++++..| .++..+..++..+...|+.++|..+++.+.+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 999999999999999 88889999999999999999999999988653
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-11 Score=118.79 Aligned_cols=225 Identities=8% Similarity=-0.071 Sum_probs=155.5
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhc----cccHHHHHHHHHHHHHhCCCCchhHH
Q 037713 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACAN----FAVLELGKQIHGLVIALGYESCLFIS 276 (610)
Q Consensus 201 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 276 (610)
+..++..+...|...|++++|++.|++..+. .+...+..+...+.. .+++++|...++.+.+.+ +...+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL----KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 4556666777777777888888888777762 344566666666766 777777777777777765 55666
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHhcCC-CChhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037713 277 NAIVDMYAK----CSDIIAAKDIFGRMRR-KDVVSWTSIIVGTAQ----HGQAEETLALYDEMVSAGVKPNEVTFVGLIY 347 (610)
Q Consensus 277 ~~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 347 (610)
..+..+|.. .+++++|...|++..+ .+..++..+...|.. .+++++|+..|++..+.+ +...+..+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 777777777 7777777777776653 356677777777777 777777777777777754 4555666666
Q ss_pred HHhc----cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 037713 348 ACSH----VGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSR----SGHLDEAENLIKAM-PFEPDEPTWAALLSACK 418 (610)
Q Consensus 348 a~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~ 418 (610)
.+.. .+++++|...|+...+. .+...+..+..+|.+ .+++++|.+.|++. ... +...+..+...+.
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~l~~~~~ 229 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-NGGGCFNLGAMQY 229 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 6666 77777777777777653 245666667777777 77777777777766 222 2555666666666
Q ss_pred h----cCchhHHHHHHHHHhcCCCCC
Q 037713 419 H----HRNTEMGTRVANHLLSLKPED 440 (610)
Q Consensus 419 ~----~g~~~~a~~~~~~~~~~~p~~ 440 (610)
. .+++++|...++++.+.+|++
T Consensus 230 ~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred cCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 6 777777777777777776643
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.49 E-value=2.5e-12 Score=121.69 Aligned_cols=197 Identities=6% Similarity=-0.079 Sum_probs=171.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037713 273 LFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYAC 349 (610)
Q Consensus 273 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 349 (610)
...+..+...|...|++++|...|+++.+ .+...|..+...|...|++++|.+.|+++.+... .+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHH
Confidence 45677788888899999999999988753 4678899999999999999999999999988643 3678888999999
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHH
Q 037713 350 SHVGLVGKGRKLFKSMIEDYGITP-SLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMG 426 (610)
Q Consensus 350 ~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a 426 (610)
...|++++|.++++.+.+ .+..| +...+..+...|.+.|++++|.+.++++ ...| +...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999876 23445 5678889999999999999999999987 3334 578888999999999999999
Q ss_pred HHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhCC
Q 037713 427 TRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVME 471 (610)
Q Consensus 427 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 471 (610)
...++++++..|+++..+..++.+|...|++++|.+.++.+.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999987643
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.3e-11 Score=118.36 Aligned_cols=225 Identities=11% Similarity=-0.032 Sum_probs=196.4
Q ss_pred CCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhcCC-CChhHHHHH
Q 037713 236 VDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAK----CSDIIAAKDIFGRMRR-KDVVSWTSI 310 (610)
Q Consensus 236 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~l 310 (610)
-++..+..+...+...|++++|...++.+.+. .+...+..+...|.. .|++++|...|++..+ .+..++..+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l 80 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLL 80 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 46777888888899999999999999999983 456788889999999 9999999999998864 478889999
Q ss_pred HHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHH
Q 037713 311 IVGTAQ----HGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSH----VGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382 (610)
Q Consensus 311 i~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 382 (610)
...|.. .+++++|+..|++..+.+ +...+..+...+.. .+++++|..+|+...+. + +...+..+.
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg 153 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILG 153 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHH
Confidence 999999 999999999999999875 77888889999998 99999999999999874 3 567788889
Q ss_pred HHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhh-
Q 037713 383 DLLSR----SGHLDEAENLIKAMPFEPDEPTWAALLSACKH----HRNTEMGTRVANHLLSLKPEDPSSYILLSNVYAS- 453 (610)
Q Consensus 383 ~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~- 453 (610)
..|.+ .+++++|.+.|++.--..+...+..+...+.. .+++++|...++++.+.+| +..+..|+.+|..
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTT
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcC
Confidence 99988 99999999999987212356778888888999 9999999999999999877 5788999999999
Q ss_pred ---hcchhHHHHHHHHHhhCCC
Q 037713 454 ---AAMWQHVSKVRKLMSVMEV 472 (610)
Q Consensus 454 ---~g~~~~a~~~~~~m~~~~~ 472 (610)
.+++++|.+.++...+.+.
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTC
T ss_pred CCcccCHHHHHHHHHHHHHcCC
Confidence 9999999999999876654
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.48 E-value=3e-12 Score=132.28 Aligned_cols=341 Identities=11% Similarity=0.005 Sum_probs=210.3
Q ss_pred HHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCh---HHHHHHHHhcCCCChhhHHHHHHHHHhcC-----
Q 037713 114 ACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLP---NNARAVFDSIKLKNSVSWTAMLSAYARSG----- 185 (610)
Q Consensus 114 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~~~~~li~~~~~~g----- 185 (610)
.+.+.|++++|.+.+..+.+.| +...+..|..+|...|+. ++|...|++..+.+...+..+...+...+
T Consensus 12 ~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 12 EALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CCHH
T ss_pred HHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCc
Confidence 3344555566666665555544 222233344444455555 56666665555445555555555444433
Q ss_pred CHHHHHHHHhhCCCC-ChhhHHHHHHHHHhCCChH---HHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHH
Q 037713 186 RKKDAMEIFEQAPVR-NLFLWTALVSGLVQSRNEI---DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261 (610)
Q Consensus 186 ~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 261 (610)
+.++|...|++...+ +...+..|...|...+..+ ++++.+......|. +.....+...+...+.++.+....
T Consensus 89 ~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~----~~a~~~Lg~~y~~~~~~~~~~~~a 164 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY----PEAGLAQVLLYRTQGTYDQHLDDV 164 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC----TTHHHHHHHHHHHHTCGGGGHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC----HHHHHHHHHHHHcCCCcccCHHHH
Confidence 566677666665433 4456677777776665533 34455555544442 334445555555555433333332
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcC---CHHHHHHHHHhcCC---CChhHHHHHHHHHHhc----CChHHHHHHHHHHH
Q 037713 262 GLVIALGYESCLFISNAIVDMYAKCS---DIIAAKDIFGRMRR---KDVVSWTSIIVGTAQH----GQAEETLALYDEMV 331 (610)
Q Consensus 262 ~~~~~~~~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~----g~~~~A~~l~~~m~ 331 (610)
....+.....++..+..|..+|.+.| +.++|.+.|++..+ ++...+..+...|... ++.++|+.+|++..
T Consensus 165 ~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa 244 (452)
T 3e4b_A 165 ERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA 244 (452)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc
Confidence 22222222334448888999999999 89999999988764 3444446677777554 68999999999987
Q ss_pred HcCCCCCHHHHHHHHHH-H--hccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHhCCC
Q 037713 332 SAGVKPNEVTFVGLIYA-C--SHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSG-----HLDEAENLIKAMPF 403 (610)
Q Consensus 332 ~~g~~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~ 403 (610)
.| +...+..|... + ...+++++|.++|++..+. | +...+..|..+|. .| ++++|.+.|++.-
T Consensus 245 -~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa- 314 (452)
T 3e4b_A 245 -PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV- 314 (452)
T ss_dssp -GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-
T ss_pred -CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-
Confidence 33 44555555555 3 5689999999999999874 4 6778888888887 55 9999999999997
Q ss_pred CCCHHHHHHHHHHHHh----cCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhh----hcchhHHHHHHHHHhhCCCc
Q 037713 404 EPDEPTWAALLSACKH----HRNTEMGTRVANHLLSLKPEDPSSYILLSNVYAS----AAMWQHVSKVRKLMSVMEVK 473 (610)
Q Consensus 404 ~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~ 473 (610)
.-+...+..|...|.. ..++++|...|++..+.+ ++.+...|+.+|.. ..+.++|...++...+.|..
T Consensus 315 ~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 315 GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 5577777777777766 449999999999998754 46788899999975 45889999999988776653
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=9.7e-12 Score=126.48 Aligned_cols=302 Identities=11% Similarity=0.005 Sum_probs=176.7
Q ss_pred ChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHH
Q 037713 104 DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD----DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLS 179 (610)
Q Consensus 104 d~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~ 179 (610)
....+......+...|++++|...++.+++.+ +.+ ..++..+...|...|++++|...|++
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-------------- 72 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHH-------------- 72 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH--------------
Confidence 34444555556666777777777777776653 223 24566677777777777777776643
Q ss_pred HHHhcCCHHHHHHHHhhCCCC--ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCC----HhHHHHHHHHHhcccc
Q 037713 180 AYARSGRKKDAMEIFEQAPVR--NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVD----PLVLSSIVGACANFAV 253 (610)
Q Consensus 180 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~t~~~ll~~~~~~~~ 253 (610)
|..+......+ ...+|..+...|...|++++|+..+++..+.....++ ..++..+...+...|+
T Consensus 73 ----------al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 142 (406)
T 3sf4_A 73 ----------DLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 142 (406)
T ss_dssp ----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence 23333332211 2345666677777777777777777776543211011 3345555555666666
Q ss_pred --------------------HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--ChhHHHHHH
Q 037713 254 --------------------LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK--DVVSWTSII 311 (610)
Q Consensus 254 --------------------~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~~~~~~~li 311 (610)
++.|...+....+. +.....+ ...++..+.
T Consensus 143 ~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~----------------------------~~~~~~~~~~~~~~~~la 194 (406)
T 3sf4_A 143 SFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSL----------------------------VTALGDRAAQGRAFGNLG 194 (406)
T ss_dssp TCC-------CCCCHHHHHHHHHHHHHHHHHHHH----------------------------HHHTTCHHHHHHHHHHHH
T ss_pred cccccccchhhhhhhhHHHHHHHHHHHHHHHHHH----------------------------HHhccCcHHHHHHHHHHH
Confidence 55555544443321 1111100 123455556
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHH
Q 037713 312 VGTAQHGQAEETLALYDEMVSAGV-KPN----EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPS----LQHYTCLL 382 (610)
Q Consensus 312 ~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li 382 (610)
..|...|++++|+..|++..+... .++ ..++..+...+...|++++|...++...+...-.++ ..++..+.
T Consensus 195 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 274 (406)
T 3sf4_A 195 NTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLG 274 (406)
T ss_dssp HHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHH
Confidence 666666666666666666543210 111 235666666777777777777777766542111111 45667777
Q ss_pred HHHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCC------CCCcchHhHH
Q 037713 383 DLLSRSGHLDEAENLIKAM----PFEPD----EPTWAALLSACKHHRNTEMGTRVANHLLSLKP------EDPSSYILLS 448 (610)
Q Consensus 383 ~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~ 448 (610)
..|.+.|++++|.+.+++. +..++ ..++..+...+...|++++|...+++++++.+ ....++..++
T Consensus 275 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 354 (406)
T 3sf4_A 275 NTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLS 354 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHH
Confidence 7888888888888877765 11122 45677777888899999999999998876532 2345667778
Q ss_pred HHhhhhcchh
Q 037713 449 NVYASAAMWQ 458 (610)
Q Consensus 449 ~~~~~~g~~~ 458 (610)
.+|...|+..
T Consensus 355 ~~~~~~g~~~ 364 (406)
T 3sf4_A 355 DLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHhhHhH
Confidence 8887777653
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=9.1e-13 Score=123.79 Aligned_cols=196 Identities=9% Similarity=0.084 Sum_probs=156.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037713 272 CLFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYA 348 (610)
Q Consensus 272 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 348 (610)
....+..+...+.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|++..+.. +.+..++..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 455677788889999999999999998864 367889999999999999999999999998863 3367888899999
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCchhHH
Q 037713 349 CSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFE-PDEPTWAALLSACKHHRNTEMG 426 (610)
Q Consensus 349 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a 426 (610)
+...|++++|.++++++.+. .+.+...+..+...|.+.|++++|.+.++++ ... .+...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999874 3456788999999999999999999999987 333 3677888899999999999999
Q ss_pred HHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhC
Q 037713 427 TRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 427 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 470 (610)
...++++++..|+++..+..++.+|...|++++|.+.++...+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999998764
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.3e-10 Score=124.37 Aligned_cols=420 Identities=8% Similarity=0.040 Sum_probs=290.3
Q ss_pred HHHHHHHHhCCCCCCchHHHHHHHhhcCCChHHHHHHHccCCC--C-CcchHHHHHHHHHcCCC---chHHHHHHHHhHH
Q 037713 24 TLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ--R-DHVSWASILTAYNQANL---PQKTISIFSTMLA 97 (610)
Q Consensus 24 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~ 97 (610)
..++..+... +.|...|..++..+.+.+.++.|+.+|+.+.. | ....|..-+..-.+.++ .+.+..+|++.+.
T Consensus 53 ~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~ 131 (679)
T 4e6h_A 53 GKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLS 131 (679)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHH
Confidence 3445555544 34788899999999999999999999998863 3 55668888888888888 9999999999987
Q ss_pred CCCCCCChhhHHHHHHHHhccCCc--------HHHHHHHHHHHh-cCC-CCC-hhHHHHHHHHHHh---------CCChH
Q 037713 98 LDKLQPDHFVFASLVKACGSLGAT--------RLGKQVHACFVL-SPF-CDD-DVVKSSLVDMYAK---------CGLPN 157 (610)
Q Consensus 98 ~~~~~pd~~~~~~ll~~~~~~~~~--------~~a~~~~~~~~~-~g~-~~~-~~~~~~li~~~~~---------~g~~~ 157 (610)
.....|+...|..-+....+.++. +...++|+.++. .|. .++ ...|...+..... .++++
T Consensus 132 ~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~ 211 (679)
T 4e6h_A 132 KELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQ 211 (679)
T ss_dssp SSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHH
Confidence 431138888877777665554443 334577877665 365 454 5678877776543 34577
Q ss_pred HHHHHHHhcCCC---C-hhhHH---HHHHHH----------HhcCCHHHHHHHHhh-------C----CC----------
Q 037713 158 NARAVFDSIKLK---N-SVSWT---AMLSAY----------ARSGRKKDAMEIFEQ-------A----PV---------- 199 (610)
Q Consensus 158 ~A~~~~~~m~~~---~-~~~~~---~li~~~----------~~~g~~~~A~~~~~~-------~----~~---------- 199 (610)
.+.++|++...- + ..+|. .+...+ -....++.|...+.+ + +.
T Consensus 212 ~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~ 291 (679)
T 4e6h_A 212 YIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNL 291 (679)
T ss_dssp HHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTS
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccC
Confidence 888999887742 1 12232 221111 011223344444432 1 11
Q ss_pred C--C------hhhHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHH-HHHHH
Q 037713 200 R--N------LFLWTALVSGLVQSR-------NEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK-QIHGL 263 (610)
Q Consensus 200 ~--~------~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~-~~~~~ 263 (610)
| + ...|...+.---..+ ..+.+..+|++.+.... -++..|...+.-+...|+.+.|. .+++.
T Consensus 292 p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p--~~~~lW~~ya~~~~~~~~~~~a~r~il~r 369 (679)
T 4e6h_A 292 PKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVC--FAPEIWFNMANYQGEKNTDSTVITKYLKL 369 (679)
T ss_dssp CCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHSCCTTHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 0 0 134555555444333 12345678888887642 57788888888888888888896 99999
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------------CC------------hhHHHHHHHHHHhcC
Q 037713 264 VIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR-------------KD------------VVSWTSIIVGTAQHG 318 (610)
Q Consensus 264 ~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------------~~------------~~~~~~li~~~~~~g 318 (610)
++.. .+.+..++-.++...-+.|+++.|.++|+++.. |+ ...|...+....+.|
T Consensus 370 Ai~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~ 448 (679)
T 4e6h_A 370 GQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQ 448 (679)
T ss_dssp HHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcC
Confidence 9875 356777888899999999999999999998763 21 236888888888899
Q ss_pred ChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhc-cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037713 319 QAEETLALYDEMVSA-GVKPNEVTFVGLIYACSH-VGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAEN 396 (610)
Q Consensus 319 ~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 396 (610)
..+.|..+|.+..+. +. +....|......-.+ .++.+.|..+|+...+. .+.+...+...++.....|+.+.|..
T Consensus 449 ~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~ 525 (679)
T 4e6h_A 449 GLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKS 525 (679)
T ss_dssp CHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHH
Confidence 999999999999876 21 123333332222223 35599999999999986 34456677888998889999999999
Q ss_pred HHHhC-CCCC----CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHh
Q 037713 397 LIKAM-PFEP----DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVY 451 (610)
Q Consensus 397 ~~~~m-~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 451 (610)
+|++. ...| ....|...+.--...|+.+.+..+.+++.+..|+++ ....+++=|
T Consensus 526 lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~-~~~~f~~ry 584 (679)
T 4e6h_A 526 LFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN-KLEEFTNKY 584 (679)
T ss_dssp HHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC-HHHHHHHHT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-HHHHHHHHh
Confidence 99987 3333 356788888888999999999999999999999874 333344433
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=4.5e-13 Score=128.55 Aligned_cols=243 Identities=13% Similarity=0.028 Sum_probs=150.6
Q ss_pred CCCchHHHHHHHHhHHCCCCCC--ChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHH
Q 037713 82 ANLPQKTISIFSTMLALDKLQP--DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNA 159 (610)
Q Consensus 82 ~g~~~~A~~~~~~m~~~~~~~p--d~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 159 (610)
.|++++|+..|+++.+.....| +..++..+...+...|++++|...+..+++.. +.+..++..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 4556666666666665421111 33445555556666666666666666666554 34455555566666666666555
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHh
Q 037713 160 RAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPL 239 (610)
Q Consensus 160 ~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~ 239 (610)
.+.|++... ....+...|..+...|.+.|++++|++.|+++.+.. |+..
T Consensus 97 ~~~~~~al~----------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---~~~~ 145 (275)
T 1xnf_A 97 YEAFDSVLE----------------------------LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD---PNDP 145 (275)
T ss_dssp HHHHHHHHH----------------------------HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCH
T ss_pred HHHHHHHHh----------------------------cCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCCh
Confidence 555543321 012245666777777777777777777777777655 3333
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-------hhHHHHHHH
Q 037713 240 VLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKD-------VVSWTSIIV 312 (610)
Q Consensus 240 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~ 312 (610)
.....+..+...|+++.|...+..+.... +++...+ .++..+...++.++|...+....+.+ ..+|..+..
T Consensus 146 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~ 223 (275)
T 1xnf_A 146 FRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGK 223 (275)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHH
Confidence 34444445566678888888887776654 2333333 36677777888888888888877532 467888888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 037713 313 GTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF 362 (610)
Q Consensus 313 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 362 (610)
.|...|++++|...|++..+. .|+. +.....++...|++++|.+.+
T Consensus 224 ~~~~~g~~~~A~~~~~~al~~--~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 224 YYLSLGDLDSATALFKLAVAN--NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT--CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHcCCHHHHHHHHHHHHhC--Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999999998875 3432 222344666778888887765
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=2e-12 Score=131.64 Aligned_cols=266 Identities=13% Similarity=0.031 Sum_probs=197.9
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCC----HhHHHHHHHHHhccccHHHHHHHHHHHHHh----CCCC-c
Q 037713 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVD----PLVLSSIVGACANFAVLELGKQIHGLVIAL----GYES-C 272 (610)
Q Consensus 202 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~ 272 (610)
...+......+...|++++|+..|++..+... .+ ...+..+...+...|+++.|...+..+.+. +..+ .
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGT--EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc--ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 34455566677777788888888877777642 23 245666677777778888888777776543 2111 2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHhcCC--------------------hHHH
Q 037713 273 LFISNAIVDMYAKCSDIIAAKDIFGRMRR-----KD----VVSWTSIIVGTAQHGQ--------------------AEET 323 (610)
Q Consensus 273 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A 323 (610)
..++..+...|...|++++|...|++..+ ++ ..++..+...|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 45677788888888999998888887653 22 4478888888999999 9999
Q ss_pred HHHHHHHHHc----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHhcCCHHHH
Q 037713 324 LALYDEMVSA----GVKPN-EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPS----LQHYTCLLDLLSRSGHLDEA 394 (610)
Q Consensus 324 ~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A 394 (610)
+..+++.... +..|. ..++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 9998876542 11121 356788889999999999999999988764222222 24788899999999999999
Q ss_pred HHHHHhC----CCCCC----HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC------CcchHhHHHHhhhhcchhHH
Q 037713 395 ENLIKAM----PFEPD----EPTWAALLSACKHHRNTEMGTRVANHLLSLKPED------PSSYILLSNVYASAAMWQHV 460 (610)
Q Consensus 395 ~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a 460 (610)
...+++. +..++ ..++..+...+...|++++|...++++++..+.. ..++..++.+|...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999876 11122 5577788888999999999999999998764432 45788999999999999999
Q ss_pred HHHHHHHhh
Q 037713 461 SKVRKLMSV 469 (610)
Q Consensus 461 ~~~~~~m~~ 469 (610)
.+.++...+
T Consensus 327 ~~~~~~al~ 335 (406)
T 3sf4_A 327 MHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988754
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.7e-11 Score=117.40 Aligned_cols=234 Identities=8% Similarity=-0.001 Sum_probs=170.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCC--HhHHHHHHHHHh
Q 037713 175 TAMLSAYARSGRKKDAMEIFEQAP---VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVD--PLVLSSIVGACA 249 (610)
Q Consensus 175 ~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~--~~t~~~ll~~~~ 249 (610)
......+.+.|++++|...|++.. ..+...|..+...|...|++++|++.|++..+.+.. |+ ...+..+...+.
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNA-TKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCT-TTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCc-hhHHHHHHHHHHHHHH
Confidence 344445555566666666665543 234557777777788888888888888887773311 11 234677777788
Q ss_pred ccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHH
Q 037713 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLAL 326 (610)
Q Consensus 250 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l 326 (610)
..|+++.|...+..+.+.. +.+..++..+...|.+.|++++|...|++..+ .+...|..+...+...+++++|++.
T Consensus 86 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888887764 34567888999999999999999999999875 3567787777344445699999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCC---HHHHHHHHHHhHHhcCCCCC------HHHHHHHHHHHHhcCCHHHHHHH
Q 037713 327 YDEMVSAGVKPNEVTFVGLIYACSHVGL---VGKGRKLFKSMIEDYGITPS------LQHYTCLLDLLSRSGHLDEAENL 397 (610)
Q Consensus 327 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~---~~~a~~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~ 397 (610)
|++..+.. +.+...+..+..++...|+ .++|...++++.+...-.|+ ...|..+...|.+.|++++|.+.
T Consensus 165 ~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 243 (272)
T 3u4t_A 165 FVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAA 243 (272)
T ss_dssp HHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99998863 2246777778888888888 88899999888775433344 26788899999999999999999
Q ss_pred HHhC-CCCCC-HHHHH
Q 037713 398 IKAM-PFEPD-EPTWA 411 (610)
Q Consensus 398 ~~~m-~~~p~-~~~~~ 411 (610)
+++. .+.|+ ...+.
T Consensus 244 ~~~al~~~p~~~~a~~ 259 (272)
T 3u4t_A 244 WKNILALDPTNKKAID 259 (272)
T ss_dssp HHHHHHHCTTCHHHHH
T ss_pred HHHHHhcCccHHHHHH
Confidence 9988 44554 33343
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.46 E-value=8.4e-13 Score=134.90 Aligned_cols=262 Identities=11% Similarity=-0.011 Sum_probs=176.7
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCH----hHHHHHHHHHhccccHHHHHHHHHHHHHh----C-CCCchhHH
Q 037713 206 TALVSGLVQSRNEIDAFYSFIEMRREGVDIVDP----LVLSSIVGACANFAVLELGKQIHGLVIAL----G-YESCLFIS 276 (610)
Q Consensus 206 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~ 276 (610)
..+...+...|++++|+..|+++.+... .+. ..+..+...+...|+++.|...++.+.+. + .+....++
T Consensus 52 ~~~g~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 52 ALEGERLCNAGDCRAGVAFFQAAIQAGT--EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC--SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhcc--cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 3445556666777777777776666542 222 34556666666677777777766666543 1 12234566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCC---------ChhHHHHHHHHHHhcCC-----------------hHHHHHHHHHH
Q 037713 277 NAIVDMYAKCSDIIAAKDIFGRMRRK---------DVVSWTSIIVGTAQHGQ-----------------AEETLALYDEM 330 (610)
Q Consensus 277 ~~li~~y~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~-----------------~~~A~~l~~~m 330 (610)
..+...|...|++++|...|++..+- ...++..+...|...|+ +++|++.+++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 67777777778877777777765421 23467777777888888 78888877775
Q ss_pred HHc----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037713 331 VSA----GVKP-NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPS----LQHYTCLLDLLSRSGHLDEAENLIKAM 401 (610)
Q Consensus 331 ~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m 401 (610)
.+. +-.| ...++..+...+...|++++|..++++..+...-.++ ...+..+...|...|++++|.+.+++.
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 442 1111 2346777778888888888888888877653211112 236778888888889988888888776
Q ss_pred -CC---CCC----HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC------CcchHhHHHHhhhhcchhHHHHHHHHH
Q 037713 402 -PF---EPD----EPTWAALLSACKHHRNTEMGTRVANHLLSLKPED------PSSYILLSNVYASAAMWQHVSKVRKLM 467 (610)
Q Consensus 402 -~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m 467 (610)
.. ..+ ..++..+...+...|++++|...++++++..+.. ..++..++.+|...|++++|.+.++..
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 11 111 4567777888888999999999999888654322 347778899999999999999988877
Q ss_pred hh
Q 037713 468 SV 469 (610)
Q Consensus 468 ~~ 469 (610)
.+
T Consensus 370 l~ 371 (411)
T 4a1s_A 370 LQ 371 (411)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.5e-12 Score=126.93 Aligned_cols=263 Identities=14% Similarity=0.041 Sum_probs=182.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCC----HhHHHHHHHHHhccccHHHHHHHHHHHHHh----CCC-CchhH
Q 037713 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVD----PLVLSSIVGACANFAVLELGKQIHGLVIAL----GYE-SCLFI 275 (610)
Q Consensus 205 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~ 275 (610)
+......+...|++++|+..|+++.+... .+ ...+..+...+...|+++.|...+..+.+. +.. ....+
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGT--EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC--SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCc--ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 33445556667777777777777766542 22 245556666677777777777776665443 211 12456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHhcCC--------------------hHHHHHH
Q 037713 276 SNAIVDMYAKCSDIIAAKDIFGRMRR-----KD----VVSWTSIIVGTAQHGQ--------------------AEETLAL 326 (610)
Q Consensus 276 ~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~l 326 (610)
+..+...|...|++++|...|++..+ ++ ..++..+...|...|+ +++|.+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 67777788888888888887777642 22 3467777888888888 8888888
Q ss_pred HHHHHHc----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHH
Q 037713 327 YDEMVSA----GVKP-NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPS----LQHYTCLLDLLSRSGHLDEAENL 397 (610)
Q Consensus 327 ~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~ 397 (610)
+++.... +..| ...++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++|.+.
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8776432 1111 1346777788888899999999988887653211112 24778888889999999999988
Q ss_pred HHhC----CCCCC----HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC------CcchHhHHHHhhhhcchhHHHHH
Q 037713 398 IKAM----PFEPD----EPTWAALLSACKHHRNTEMGTRVANHLLSLKPED------PSSYILLSNVYASAAMWQHVSKV 463 (610)
Q Consensus 398 ~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~ 463 (610)
+++. +..++ ..++..+...+...|++++|...++++++..|.. ..++..++.+|...|++++|.+.
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 8876 11122 4567777888999999999999999988664432 34777899999999999999999
Q ss_pred HHHHhh
Q 037713 464 RKLMSV 469 (610)
Q Consensus 464 ~~~m~~ 469 (610)
++...+
T Consensus 326 ~~~a~~ 331 (338)
T 3ro2_A 326 AEKHLE 331 (338)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.45 E-value=3.3e-12 Score=128.07 Aligned_cols=226 Identities=11% Similarity=0.089 Sum_probs=194.7
Q ss_pred CHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC-HHHHHHHHHhcCC---CChhHHHHHHH
Q 037713 237 DPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSD-IIAAKDIFGRMRR---KDVVSWTSIIV 312 (610)
Q Consensus 237 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~ 312 (610)
+...+..+..++...|+++.|...++.+++.. +.+..+|+.+...|.+.|+ +++|+..|++..+ .+...|+.+..
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~ 174 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 45667778888889999999999999999886 4568899999999999997 9999999999874 47889999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHh-cCCH
Q 037713 313 GTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSR-SGHL 391 (610)
Q Consensus 313 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~ 391 (610)
.+...|++++|+..|+++++.... +...|..+..++...|++++|+..|+++++. -+-+...|+.+..+|.+ .|..
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcc
Confidence 999999999999999999987433 7889999999999999999999999999884 34467899999999999 6765
Q ss_pred HHH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--chhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhc-------
Q 037713 392 DEA-----ENLIKAM-PFEP-DEPTWAALLSACKHHR--NTEMGTRVANHLLSLKPEDPSSYILLSNVYASAA------- 455 (610)
Q Consensus 392 ~~A-----~~~~~~m-~~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------- 455 (610)
++| ++.|++. .+.| +...|..+...+...| ++++|++.++++ +.+|+++.++..|+.+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 777 4677766 4455 4778888888888888 689999999998 899999999999999999875
Q ss_pred --chhHHHHHHHHH
Q 037713 456 --MWQHVSKVRKLM 467 (610)
Q Consensus 456 --~~~~a~~~~~~m 467 (610)
..++|.++++.+
T Consensus 331 ~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 331 EDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 358899999887
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.8e-11 Score=120.63 Aligned_cols=274 Identities=11% Similarity=0.000 Sum_probs=141.9
Q ss_pred HHHHhccCCcHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCH
Q 037713 112 VKACGSLGATRLGKQVHACFVLSPFCDD----DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRK 187 (610)
Q Consensus 112 l~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~ 187 (610)
...+...|++++|...++.+++.. +.+ ..++..+...|...|++++|.+.+++..
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-------------------- 70 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL-------------------- 70 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------------------
T ss_pred HHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------------------
Confidence 344455566666666666666543 222 2455566666777777777766654332
Q ss_pred HHHHHHHhhCCCC--ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCC----HhHHHHHHHHHhcccc--------
Q 037713 188 KDAMEIFEQAPVR--NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVD----PLVLSSIVGACANFAV-------- 253 (610)
Q Consensus 188 ~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~t~~~ll~~~~~~~~-------- 253 (610)
++......+ ...++..+...|...|++++|+..+++..+.....++ ..++..+...+...|+
T Consensus 71 ----~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 146 (338)
T 3ro2_A 71 ----TLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQ 146 (338)
T ss_dssp ----HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC
T ss_pred ----HHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhh
Confidence 222221111 1345566666777777777777777766543211022 2245555555666666
Q ss_pred ------------HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--ChhHHHHHHHHHHhcCC
Q 037713 254 ------------LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK--DVVSWTSIIVGTAQHGQ 319 (610)
Q Consensus 254 ------------~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~ 319 (610)
++.|...+....+. +.....+ ...++..+...+...|+
T Consensus 147 ~~~~~~~~a~~~~~~A~~~~~~a~~~----------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~ 198 (338)
T 3ro2_A 147 DTGEFPEDVRNALQAAVDLYEENLSL----------------------------VTALGDRAAQGRAFGNLGNTHYLLGN 198 (338)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHH----------------------------HHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHH----------------------------HHhcCCHHHHHHHHHHHHHHHHHhCC
Confidence 55555555444322 0110000 12234444445555555
Q ss_pred hHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHhcCC
Q 037713 320 AEETLALYDEMVSAGV-KPN----EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPS----LQHYTCLLDLLSRSGH 390 (610)
Q Consensus 320 ~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~ 390 (610)
+++|...+++..+... .++ ..++..+...+...|++++|..+++...+...-.++ ..++..+...|...|+
T Consensus 199 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 278 (338)
T 3ro2_A 199 FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD 278 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcC
Confidence 5555555554432100 011 224555555666666666666666555432111111 3456666666777777
Q ss_pred HHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCC
Q 037713 391 LDEAENLIKAM-PF---EPD----EPTWAALLSACKHHRNTEMGTRVANHLLSLKP 438 (610)
Q Consensus 391 ~~~A~~~~~~m-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 438 (610)
+++|...+++. .. .++ ..++..+...+...|++++|...+++++++.+
T Consensus 279 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 279 YEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 77777666655 10 111 34566677777788888888888888777654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.41 E-value=1.5e-11 Score=110.13 Aligned_cols=163 Identities=14% Similarity=0.111 Sum_probs=93.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 037713 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLD 383 (610)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 383 (610)
+..|..+...|...|++++|++.|++..+.... +..++..+..++.+.|++++|...+...... .+.+...+..+..
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS 81 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence 445555555555556666666666555554221 3455555555566666666666666555542 2233445555555
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHH
Q 037713 384 LLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461 (610)
Q Consensus 384 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 461 (610)
.+...+++++|.+.+++. ...| +...+..+...+...|++++|++.++++++.+|.++.++..++.+|.+.|++++|.
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence 566666666666665554 2222 34555555666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHhh
Q 037713 462 KVRKLMSV 469 (610)
Q Consensus 462 ~~~~~m~~ 469 (610)
+.++...+
T Consensus 162 ~~~~~al~ 169 (184)
T 3vtx_A 162 KYFKKALE 169 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66665543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.6e-12 Score=133.72 Aligned_cols=193 Identities=8% Similarity=-0.023 Sum_probs=165.0
Q ss_pred CchhHHHHHHHHHHhcCCH-HHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037713 271 SCLFISNAIVDMYAKCSDI-IAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLI 346 (610)
Q Consensus 271 ~~~~~~~~li~~y~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 346 (610)
.+...+..+...|...|++ ++|.+.|++..+ .+...|..+...|...|++++|++.|++..+. .|+...+..+.
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg 177 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLS 177 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHH
Confidence 4566777777777788888 888888877653 35778899999999999999999999998875 57778888899
Q ss_pred HHHhcc---------CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHhC-CCCC---
Q 037713 347 YACSHV---------GLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRS--------GHLDEAENLIKAM-PFEP--- 405 (610)
Q Consensus 347 ~a~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~m-~~~p--- 405 (610)
.++... |++++|.+.|++..+. .+.+...|..+..+|... |++++|.+.|++. ...|
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 255 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcc
Confidence 999999 9999999999999874 344578899999999988 9999999999988 4455
Q ss_pred -CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHH
Q 037713 406 -DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLM 467 (610)
Q Consensus 406 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 467 (610)
+...|..+..++...|++++|...++++++++|+++.++..++.++...|++++|.+.+..+
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 68889999999999999999999999999999999999999999999999999998755443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.6e-11 Score=123.81 Aligned_cols=275 Identities=12% Similarity=-0.016 Sum_probs=155.5
Q ss_pred HHHHHhccCCcHHHHHHHHHHHhcCCCCCh----hHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCC
Q 037713 111 LVKACGSLGATRLGKQVHACFVLSPFCDDD----VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGR 186 (610)
Q Consensus 111 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~ 186 (610)
+...+...|++++|...++.+++.+ +.+. .++..+...|...|++++|...|++
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~--------------------- 111 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKH--------------------- 111 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH---------------------
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHH---------------------
Confidence 3344555666666666666666553 2222 3455566666666666666666543
Q ss_pred HHHHHHHHhhCCCC--ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcC----CCCCCHhHHHHHHHHHhcccc-------
Q 037713 187 KKDAMEIFEQAPVR--NLFLWTALVSGLVQSRNEIDAFYSFIEMRREG----VDIVDPLVLSSIVGACANFAV------- 253 (610)
Q Consensus 187 ~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~~p~~~t~~~ll~~~~~~~~------- 253 (610)
|.++....... ....|..+...|...|++++|+..|++..+.. -.+....++..+...+...|+
T Consensus 112 ---al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~ 188 (411)
T 4a1s_A 112 ---DLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNP 188 (411)
T ss_dssp ---HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred ---HHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccc
Confidence 22232222211 23456667777777777777777777765431 111223455555666666666
Q ss_pred ----------HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--ChhHHHHHHHHHHhcCChH
Q 037713 254 ----------LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK--DVVSWTSIIVGTAQHGQAE 321 (610)
Q Consensus 254 ----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~ 321 (610)
++.|...+....+. +.....+ ...+|..+...|...|+++
T Consensus 189 ~~~~~~a~~~~~~A~~~~~~al~~----------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~ 240 (411)
T 4a1s_A 189 GKFGDDVKEALTRAVEFYQENLKL----------------------------MRDLGDRGAQGRACGNLGNTYYLLGDFQ 240 (411)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHH----------------------------HHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHH----------------------------HHHcCCHHHHHHHHHHHHHHHHHcCChH
Confidence 55555554443321 1111110 1234555555566666666
Q ss_pred HHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC----CHHHHHHHHHHHHhcCCHH
Q 037713 322 ETLALYDEMVSAGV-KPN----EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP----SLQHYTCLLDLLSRSGHLD 392 (610)
Q Consensus 322 ~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~ 392 (610)
+|+..|++..+... .++ ..++..+...+...|++++|...+++..+...-.. ...++..+...|.+.|+++
T Consensus 241 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 320 (411)
T 4a1s_A 241 AAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFN 320 (411)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 66666655543210 011 22556666677777777777777766654311111 1456777777788888888
Q ss_pred HHHHHHHhC-CC---CCC----HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCC
Q 037713 393 EAENLIKAM-PF---EPD----EPTWAALLSACKHHRNTEMGTRVANHLLSLKP 438 (610)
Q Consensus 393 ~A~~~~~~m-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 438 (610)
+|.+.+++. .+ .++ ..++..+...+...|++++|...+++++++.+
T Consensus 321 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 321 TAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 888777765 11 111 34667777888889999999999999887765
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-10 Score=113.70 Aligned_cols=219 Identities=10% Similarity=0.070 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHHcCCCCCCHhHHHHHHHHHh-------ccccH-------HHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 037713 219 IDAFYSFIEMRREGVDIVDPLVLSSIVGACA-------NFAVL-------ELGKQIHGLVIALGYESCLFISNAIVDMYA 284 (610)
Q Consensus 219 ~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 284 (610)
++|+.+|++..... |.++..|......+. ..|++ ++|..+++.+++.-.+.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 67778888887764 256666766666654 34664 888888888887423446678888999999
Q ss_pred hcCCHHHHHHHHHhcCC--C-Chh-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh-ccCCHHHHH
Q 037713 285 KCSDIIAAKDIFGRMRR--K-DVV-SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACS-HVGLVGKGR 359 (610)
Q Consensus 285 ~~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~ 359 (610)
+.|++++|..+|++..+ | +.. .|..++..+.+.|++++|..+|++..+... ++...|........ ..|++++|.
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999998764 3 343 899999999999999999999999987642 34445544433322 369999999
Q ss_pred HHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 037713 360 KLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-P---FEP--DEPTWAALLSACKHHRNTEMGTRVANHL 433 (610)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~---~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 433 (610)
.+|+...+.. +.+...|..++..+.+.|++++|..+|++. . +.| ....|..++......|+.+.|..+++++
T Consensus 190 ~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 190 KIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999988752 346788899999999999999999999887 2 355 3668888888888999999999999999
Q ss_pred hcCCCCCCc
Q 037713 434 LSLKPEDPS 442 (610)
Q Consensus 434 ~~~~p~~~~ 442 (610)
++..|+++.
T Consensus 268 ~~~~p~~~~ 276 (308)
T 2ond_A 268 FTAFREEYE 276 (308)
T ss_dssp HHHTTTTTS
T ss_pred HHHcccccc
Confidence 999997653
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1.9e-11 Score=109.56 Aligned_cols=167 Identities=12% Similarity=0.038 Sum_probs=142.2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037713 272 CLFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYA 348 (610)
Q Consensus 272 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 348 (610)
+..+|..|...|.+.|++++|.+.|++..+ .+..+|..+...|.+.|++++|+..+++....... +...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHH
Confidence 567888888999999999999999988763 46788999999999999999999999998876433 56777778888
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHH
Q 037713 349 CSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMG 426 (610)
Q Consensus 349 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a 426 (610)
+...++++.+...+....+. .+.+...+..+...|.+.|++++|.+.|++. ...| +..+|..+...+...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 89999999999999998774 3456788899999999999999999999887 4444 577899999999999999999
Q ss_pred HHHHHHHhcCCCCCC
Q 037713 427 TRVANHLLSLKPEDP 441 (610)
Q Consensus 427 ~~~~~~~~~~~p~~~ 441 (610)
+..++++++++|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999999753
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.4e-12 Score=124.69 Aligned_cols=235 Identities=11% Similarity=0.065 Sum_probs=120.8
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHc-------CCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHh------C
Q 037713 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRRE-------GVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIAL------G 268 (610)
Q Consensus 202 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~ 268 (610)
..+|..+...+...|++++|+.+|+++.+. ... .....+..+...+...|+++.|...+..+.+. +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHP-DVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 457788888888888898888888888763 111 34455566666666677777777666666543 1
Q ss_pred C-CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCC-CHH
Q 037713 269 Y-ESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSA------GVKP-NEV 340 (610)
Q Consensus 269 ~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p-~~~ 340 (610)
- +....++..+...|...|++++|...|+ +..+. +-.| ...
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-------------------------------~a~~~~~~~~~~~~~~~~~ 154 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCK-------------------------------RALEIREKVLGKDHPDVAK 154 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHH-------------------------------HHHHHHHHHHCTTCHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHH-------------------------------HHHHHHHHhcCCCChHHHH
Confidence 1 1123344445555555555555555544 43332 1111 123
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhc-----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-C---------CC
Q 037713 341 TFVGLIYACSHVGLVGKGRKLFKSMIEDY-----GITP-SLQHYTCLLDLLSRSGHLDEAENLIKAM-P---------FE 404 (610)
Q Consensus 341 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~---------~~ 404 (610)
.+..+...+...|++++|.++++.+.+.. +..| ....+..+...|.+.|++++|.+.++++ . ..
T Consensus 155 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 155 QLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 34444555555555555555555544320 0011 1234555555555555555555555444 0 11
Q ss_pred CC-------HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHh
Q 037713 405 PD-------EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMS 468 (610)
Q Consensus 405 p~-------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 468 (610)
|. ...+..+...+...+.+.++...+++.....|..+.++..++.+|.+.|++++|.+.++...
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 305 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAM 305 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 11 11122222334445556666666766666667677777788888888888888887777654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.32 E-value=7e-11 Score=119.46 Aligned_cols=161 Identities=12% Similarity=0.065 Sum_probs=68.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc---CC-CCCHH
Q 037713 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGV-KPN----EVTFVGLIYACSHVGLVGKGRKLFKSMIEDY---GI-TPSLQ 376 (610)
Q Consensus 306 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~-~~~~~ 376 (610)
+++.+...|...|++++|+..|++..+... .++ ..++..+...|...|++++|...+++..+.. +. +....
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 265 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ 265 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence 344444444445555555554444432100 011 1234444445555555555555554443310 11 11234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CC-----CCC-HHHHHHHHHHHHhcCc---hhHHHHHHHHHhcCCCCCCcchHh
Q 037713 377 HYTCLLDLLSRSGHLDEAENLIKAM-PF-----EPD-EPTWAALLSACKHHRN---TEMGTRVANHLLSLKPEDPSSYIL 446 (610)
Q Consensus 377 ~~~~li~~~~~~g~~~~A~~~~~~m-~~-----~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~ 446 (610)
++..+...|.+.|++++|.+.+++. .+ .|. ...+..+...+...|+ .++|+.++++. ...|.....+..
T Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~ 344 (383)
T 3ulq_A 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHH
Confidence 4444555555555555555555443 00 111 1112333333444444 44444444443 112222334445
Q ss_pred HHHHhhhhcchhHHHHHHHHH
Q 037713 447 LSNVYASAAMWQHVSKVRKLM 467 (610)
Q Consensus 447 l~~~~~~~g~~~~a~~~~~~m 467 (610)
++.+|...|++++|.+.++..
T Consensus 345 la~~y~~~g~~~~A~~~~~~a 365 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKV 365 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 555555555555555555554
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.31 E-value=3.6e-09 Score=113.19 Aligned_cols=402 Identities=9% Similarity=-0.044 Sum_probs=276.7
Q ss_pred CCcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCC---cHHHHHHHHHHHhcC-CCCChhH
Q 037713 67 RDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGA---TRLGKQVHACFVLSP-FCDDDVV 142 (610)
Q Consensus 67 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~g-~~~~~~~ 142 (610)
.|..+|..++..+.+.+.++.+..+|+.+... .+.....|..-+..-.+.++ .+.+..+|+..+... .+|++..
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 48889999999999999999999999999985 34456667777777778888 999999999999864 2488888
Q ss_pred HHHHHHHHHhCCCh--------HHHHHHHHhcC------CC-ChhhHHHHHHHHH---------hcCCHHHHHHHHhhCC
Q 037713 143 KSSLVDMYAKCGLP--------NNARAVFDSIK------LK-NSVSWTAMLSAYA---------RSGRKKDAMEIFEQAP 198 (610)
Q Consensus 143 ~~~li~~~~~~g~~--------~~A~~~~~~m~------~~-~~~~~~~li~~~~---------~~g~~~~A~~~~~~~~ 198 (610)
|...+....+.++. +...++|+... .+ +...|...+.-.. ..++++.+.++|++..
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 98888776665554 33447777532 22 4567888776543 3456788999998876
Q ss_pred CC---Ch-hhH---HHHHHHH----------HhCCChHHHHHHHHHHHHc--CCC---C-----------C--C---H--
Q 037713 199 VR---NL-FLW---TALVSGL----------VQSRNEIDAFYSFIEMRRE--GVD---I-----------V--D---P-- 238 (610)
Q Consensus 199 ~~---~~-~~~---~~li~~~----------~~~g~~~~A~~~~~~m~~~--~~~---~-----------p--~---~-- 238 (610)
.- +. ..| ..+...+ -....++.|...+.++... ++. | | + .
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q 301 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ 301 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence 32 11 233 2222221 0012234455555554321 111 0 1 1 0
Q ss_pred -hHHHHHHHHHhccc-------cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH-HHHHhcCC---CChhH
Q 037713 239 -LVLSSIVGACANFA-------VLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAK-DIFGRMRR---KDVVS 306 (610)
Q Consensus 239 -~t~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~-~~~~~~~~---~~~~~ 306 (610)
..|...+.---..+ ..+....+|++++... +.+..+|-..+..+.+.|+.++|. ++|++... ++...
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~L 380 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHH
Confidence 12222222222211 2344567788887763 557788888888888999999996 99988763 35667
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCC---------CCC------------HHHHHHHHHHHhccCCHHHHHHHHHHh
Q 037713 307 WTSIIVGTAQHGQAEETLALYDEMVSAGV---------KPN------------EVTFVGLIYACSHVGLVGKGRKLFKSM 365 (610)
Q Consensus 307 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~---------~p~------------~~t~~~ll~a~~~~g~~~~a~~~~~~~ 365 (610)
|-..+...-+.|++++|.++|+++..... .|+ ...|...+....+.|..+.|..+|..+
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888889999999999999999886410 142 235777778778889999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCC---
Q 037713 366 IEDYGITPSLQHYTCLLDLLSRSG-HLDEAENLIKAM--PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE--- 439 (610)
Q Consensus 366 ~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--- 439 (610)
.+.. -.+....|...+.+-.+.| +.+.|..+|+.. ...-+...|...+.-....|+.+.|..+|+++++..|+
T Consensus 461 ~~~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~ 539 (679)
T 4e6h_A 461 RRLK-KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHL 539 (679)
T ss_dssp HHTG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTH
T ss_pred HHhc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHH
Confidence 8741 1123345544444444554 589999999887 32335667778888888899999999999999988873
Q ss_pred CCcchHhHHHHhhhhcchhHHHHHHHHHhhCCC
Q 037713 440 DPSSYILLSNVYASAAMWQHVSKVRKLMSVMEV 472 (610)
Q Consensus 440 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 472 (610)
....+...+..-.+.|..+.+.++.+++.+.-.
T Consensus 540 ~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 540 LKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 334666777777888999999999999987544
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.29 E-value=4.1e-10 Score=110.04 Aligned_cols=178 Identities=13% Similarity=0.073 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHc-CCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCc-hh-HHHHHHHHHHhcCCHHHHHHH
Q 037713 219 IDAFYSFIEMRRE-GVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESC-LF-ISNAIVDMYAKCSDIIAAKDI 295 (610)
Q Consensus 219 ~~A~~~~~~m~~~-~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~li~~y~~~g~~~~A~~~ 295 (610)
++|..+|++..+. . |.+...|..++..+...|+++.|..+++.+++. .|+ .. +|..++..+.+.|++++|..+
T Consensus 81 ~~A~~~~~rAl~~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~ 156 (308)
T 2ond_A 81 DEAANIYERAISTLL--KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMI 156 (308)
T ss_dssp HHHHHHHHHHHTTTT--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHH
Confidence 6677777776662 3 134556666666667777777777777777663 232 32 677777777788888888888
Q ss_pred HHhcCCC---ChhHHHHHHHHHH-hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC
Q 037713 296 FGRMRRK---DVVSWTSIIVGTA-QHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGI 371 (610)
Q Consensus 296 ~~~~~~~---~~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 371 (610)
|++..+. +...|........ ..|+.++|..+|++..+... -+...|..++..+.+.|++++|..+|+...+...+
T Consensus 157 ~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l 235 (308)
T 2ond_A 157 FKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCC
Confidence 8877542 3344443333222 26889999999988877532 25677888888888899999999999998874224
Q ss_pred CC--CHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037713 372 TP--SLQHYTCLLDLLSRSGHLDEAENLIKAM 401 (610)
Q Consensus 372 ~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m 401 (610)
+| ....|..++..+.+.|+.++|..+++++
T Consensus 236 ~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55 3578888888888899999999988887
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.1e-09 Score=110.42 Aligned_cols=226 Identities=8% Similarity=0.032 Sum_probs=119.0
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCC----HhHHHHHHHHHhccccHHHHHHHHHHHHHhCC-----C-CchhHHH
Q 037713 208 LVSGLVQSRNEIDAFYSFIEMRREGVDIVD----PLVLSSIVGACANFAVLELGKQIHGLVIALGY-----E-SCLFISN 277 (610)
Q Consensus 208 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~-~~~~~~~ 277 (610)
....+...|++++|+..|++..+.....++ ..++..+...+...|+++.|...+..+.+... . ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 344556777777777777777653211122 33455556666666666666666666554311 1 1133455
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCHHHHH
Q 037713 278 AIVDMYAKCSDIIAAKDIFGRMRR-----KD----VVSWTSIIVGTAQHGQAEETLALYDEMVS-----AGVKPNEVTFV 343 (610)
Q Consensus 278 ~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~ 343 (610)
.+...|...|++++|...|++..+ ++ ..+++.+...|...|++++|+..|++..+ .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 566666666666666666655432 11 23455566666666666666666666554 21 11244555
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCC---CCCHHHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 037713 344 GLIYACSHVGLVGKGRKLFKSMIEDYGI---TPSLQHYTCLLDLLSRSGH---LDEAENLIKAMPFEPD-EPTWAALLSA 416 (610)
Q Consensus 344 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~-~~~~~~ll~~ 416 (610)
.+..++.+.|++++|..++++..+...- +.....+..+...|...|+ +++|...+++.+..|+ ...+..+...
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence 5666666666666666666665543211 1112334444455555555 5555555555433222 2233344444
Q ss_pred HHhcCchhHHHHHHHHHh
Q 037713 417 CKHHRNTEMGTRVANHLL 434 (610)
Q Consensus 417 ~~~~g~~~~a~~~~~~~~ 434 (610)
|...|++++|...+++++
T Consensus 346 y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 555555555555555544
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=1e-11 Score=121.20 Aligned_cols=239 Identities=11% Similarity=0.046 Sum_probs=147.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--------C---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHc------C
Q 037713 170 NSVSWTAMLSAYARSGRKKDAMEIFEQAPV--------R---NLFLWTALVSGLVQSRNEIDAFYSFIEMRRE------G 232 (610)
Q Consensus 170 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~ 232 (610)
+..+|..+...|...|++++|...|+++.. . ...++..+...|...|++++|+..|++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 356788899999999999999999988654 2 3467888999999999999999999998865 3
Q ss_pred CCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHh------CCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh
Q 037713 233 VDIVDPLVLSSIVGACANFAVLELGKQIHGLVIAL------GYE-SCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305 (610)
Q Consensus 233 ~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~ 305 (610)
-.+.....+..+...+...|+++.|...+..+.+. +.. ....++..+...|.+.|++++|...|++.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a------ 179 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA------ 179 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH------
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH------
Confidence 22245677888899999999999999999988765 211 12344555555555555555555555443
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc------CCC
Q 037713 306 SWTSIIVGTAQHGQAEETLALYDEMVSA------GVKPN-EVTFVGLIYACSHVGLVGKGRKLFKSMIEDY------GIT 372 (610)
Q Consensus 306 ~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~ 372 (610)
.+. +..|+ ..++..+...+...|++++|..+++++.+.. ...
T Consensus 180 -------------------------~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 180 -------------------------LEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp -------------------------HHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred -------------------------HHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 321 11111 2234444445555555555555554444310 001
Q ss_pred C-------CHHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCC
Q 037713 373 P-------SLQHYTCLLDLLSRSGHLDEAENLIKAMP-FEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439 (610)
Q Consensus 373 ~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 439 (610)
+ ....+..+...+...+.+.+|...++... ..| +..++..+...|...|++++|...+++++++.|.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1 11222333334445556666666666652 233 3566788888899999999999999998877664
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=5.9e-11 Score=128.52 Aligned_cols=160 Identities=17% Similarity=0.176 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 037713 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDL 384 (610)
Q Consensus 305 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 384 (610)
.+|+.|...|.+.|++++|++.|++..+.... +..++..+..++.+.|++++|++.|++..+. -+-+...|..+..+
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 34444444444445555555555444443111 2344444555555555555555555544442 11223445555555
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHH
Q 037713 385 LSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSK 462 (610)
Q Consensus 385 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 462 (610)
|.+.|++++|++.|++. .+.| +...|..+...+...|++++|+..|+++++++|+++.++..|+.+|...|+|++|.+
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~ 166 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDE 166 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHH
Confidence 55555555555555444 2233 244455555555555555555555555555555555555555555555555555555
Q ss_pred HHHHH
Q 037713 463 VRKLM 467 (610)
Q Consensus 463 ~~~~m 467 (610)
.+++.
T Consensus 167 ~~~ka 171 (723)
T 4gyw_A 167 RMKKL 171 (723)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.26 E-value=7.7e-10 Score=111.74 Aligned_cols=164 Identities=9% Similarity=0.087 Sum_probs=121.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHc----CC-CCCH
Q 037713 274 FISNAIVDMYAKCSDIIAAKDIFGRMRR-----KD----VVSWTSIIVGTAQHGQAEETLALYDEMVSA----GV-KPNE 339 (610)
Q Consensus 274 ~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~-~p~~ 339 (610)
.+++.+...|...|++++|...|++..+ ++ ..++..+...|...|++++|+..|++..+. +. +...
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 264 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence 3556666777777777777777766542 11 246777888888899999999988887762 23 2335
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhc---CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCC-HHHHHH
Q 037713 340 VTFVGLIYACSHVGLVGKGRKLFKSMIEDY---GITPSLQHYTCLLDLLSRSGH---LDEAENLIKAMPFEPD-EPTWAA 412 (610)
Q Consensus 340 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~-~~~~~~ 412 (610)
.++..+..++...|++++|...+++..+.. +-+.....+..+...|...|+ +++|..++++.+..|+ ...+..
T Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~ 344 (383)
T 3ulq_A 265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 678888899999999999999998876532 112223346778888899999 8999999999865554 345667
Q ss_pred HHHHHHhcCchhHHHHHHHHHhcCC
Q 037713 413 LLSACKHHRNTEMGTRVANHLLSLK 437 (610)
Q Consensus 413 ll~~~~~~g~~~~a~~~~~~~~~~~ 437 (610)
+...|...|++++|...+++++++.
T Consensus 345 la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 7888999999999999999988643
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.25 E-value=3.3e-09 Score=106.61 Aligned_cols=261 Identities=11% Similarity=-0.041 Sum_probs=174.8
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCCHh----HHHHHHHHHhccccHHHHHHHHHHHHHhCCC-Cc----hhHHHH
Q 037713 208 LVSGLVQSRNEIDAFYSFIEMRREGVDIVDPL----VLSSIVGACANFAVLELGKQIHGLVIALGYE-SC----LFISNA 278 (610)
Q Consensus 208 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 278 (610)
....+...|++++|...+++....... .+.. .+..+...+...|+++.|...+....+.... .+ ..+...
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPP-GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCC-CchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 334556677777777777776664422 2222 3444555666777777777777776653111 11 233566
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC----------C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--C--CHHHHH
Q 037713 279 IVDMYAKCSDIIAAKDIFGRMRR----------K-DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVK--P--NEVTFV 343 (610)
Q Consensus 279 li~~y~~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p--~~~t~~ 343 (610)
+...|...|++++|...+++..+ + ....+..+...+...|++++|...+++....... | ...++.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 77778888888888888876642 1 1235666777888899999999999887764221 1 235677
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHhC-CCCCC-----HHHHHH
Q 037713 344 GLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYT-----CLLDLLSRSGHLDEAENLIKAM-PFEPD-----EPTWAA 412 (610)
Q Consensus 344 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ 412 (610)
.+...+...|++++|...++.......-......+. ..+..+...|++++|...+++. ...|. ...+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 788888899999999999988865322211111222 2334577899999999999887 22222 234567
Q ss_pred HHHHHHhcCchhHHHHHHHHHhcCCCC-----C-CcchHhHHHHhhhhcchhHHHHHHHHHhh
Q 037713 413 LLSACKHHRNTEMGTRVANHLLSLKPE-----D-PSSYILLSNVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 413 ll~~~~~~g~~~~a~~~~~~~~~~~p~-----~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 469 (610)
+...+...|++++|...++++++..+. + ...+..++.+|...|++++|...++....
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 777888999999999999988754322 1 13667788899999999999998887654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.25 E-value=1.8e-10 Score=102.74 Aligned_cols=164 Identities=13% Similarity=0.015 Sum_probs=92.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 037713 274 FISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACS 350 (610)
Q Consensus 274 ~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 350 (610)
..+..+...|...|++++|...|+++.+ .+...|..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 4455666667777777777777776653 245566666666666666666666666666542 224555555566666
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCchhHHHH
Q 037713 351 HVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFE-PDEPTWAALLSACKHHRNTEMGTR 428 (610)
Q Consensus 351 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~ 428 (610)
..|++++|.++++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ... .+...+..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 666666666666665552 2234445555555555555555555555544 111 234444445555555555555555
Q ss_pred HHHHHhcCCCCC
Q 037713 429 VANHLLSLKPED 440 (610)
Q Consensus 429 ~~~~~~~~~p~~ 440 (610)
.++++++..|++
T Consensus 166 ~~~~~~~~~~~~ 177 (186)
T 3as5_A 166 HFKKANELDEGA 177 (186)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHcCCCc
Confidence 555555544443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.25 E-value=4.5e-10 Score=100.05 Aligned_cols=164 Identities=15% Similarity=0.093 Sum_probs=142.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 037713 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLD 383 (610)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 383 (610)
...|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|..+++.+.+. .+.+...+..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~ 84 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHH
Confidence 3567778888999999999999999987653 336788889999999999999999999999874 3456788999999
Q ss_pred HHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHH
Q 037713 384 LLSRSGHLDEAENLIKAM-PF-EPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461 (610)
Q Consensus 384 ~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 461 (610)
.|...|++++|.+.++++ .. +.+...+..+...+...|++++|...++++++..|.++..+..++.+|...|++++|.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999987 22 3467788888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhC
Q 037713 462 KVRKLMSVM 470 (610)
Q Consensus 462 ~~~~~m~~~ 470 (610)
+.++...+.
T Consensus 165 ~~~~~~~~~ 173 (186)
T 3as5_A 165 PHFKKANEL 173 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 999887654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.24 E-value=3.7e-10 Score=104.89 Aligned_cols=205 Identities=13% Similarity=0.084 Sum_probs=153.4
Q ss_pred CCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHH
Q 037713 236 VDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR--K-DVVSWTSIIV 312 (610)
Q Consensus 236 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~ 312 (610)
.|+..+......+...|++++|...+..+++...+++...+..+..+|.+.|++++|...|++..+ | +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 577888888888999999999999999999887546777777788999999999999999988763 3 4677888889
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC---HHHHHHHH
Q 037713 313 GTAQHGQAEETLALYDEMVSAGVKPNE-------VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPS---LQHYTCLL 382 (610)
Q Consensus 313 ~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~li 382 (610)
.|...|++++|+..|++..+.... +. ..|..+...+...|++++|.+.|+.+.+ ..|+ ...|..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHH
Confidence 999999999999999998875322 34 4577777888888999999999988865 3454 56777788
Q ss_pred HHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHh
Q 037713 383 DLLSRSGHLDEAENLIKAM-PF-EPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVY 451 (610)
Q Consensus 383 ~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 451 (610)
..|...|+. .++++ .+ ..+...+..+. ....+.+++|...++++++++|+++.+...+..+.
T Consensus 161 ~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 161 VLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 777666543 22222 11 12333443333 34456789999999999999999877666665543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.19 E-value=9.4e-10 Score=102.15 Aligned_cols=189 Identities=11% Similarity=0.031 Sum_probs=104.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037713 272 CLFISNAIVDMYAKCSDIIAAKDIFGRMRR----KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIY 347 (610)
Q Consensus 272 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 347 (610)
|+..+..+...|.+.|++++|...|++..+ ++...|..+...+...|++++|+..|++..+.... +...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHH
Confidence 445555666666666666666666665542 45555555666666666666666666666654211 3445556666
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHH
Q 037713 348 ACSHVGLVGKGRKLFKSMIEDYGITPSL-------QHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD---EPTWAALLSA 416 (610)
Q Consensus 348 a~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~~ 416 (610)
++...|++++|...++...+.. +.+. ..|..+...+.+.|++++|.+.|++. ...|+ ...|..+...
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 6666666666666666665531 2222 34555555666666666666666655 44454 2334444444
Q ss_pred HHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhC
Q 037713 417 CKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 417 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 470 (610)
+.. .+...++++..+.+.++..|.. ......+.+++|...++...+.
T Consensus 163 ~~~-----~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 163 FYN-----NGADVLRKATPLASSNKEKYAS--EKAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHH-----HHHHHHHHHGGGTTTCHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHHhcccCCHHHHHH--HHHHHHHHHHHHHHHHHHHhhc
Confidence 432 3334445555555444333322 2233445568888888877653
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.19 E-value=5.2e-10 Score=116.23 Aligned_cols=207 Identities=10% Similarity=-0.071 Sum_probs=147.7
Q ss_pred cHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCCh-HHHHHHHHhcC---CCChhhHHHHHHHHHhcCCHHHHHHHHhh
Q 037713 121 TRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLP-NNARAVFDSIK---LKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196 (610)
Q Consensus 121 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 196 (610)
++.+.+.+....+.. +.+...+..+...|...|++ ++|.+.|++.. ..+...|..+...|.+.|++++|.+.|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444444443332 33455555555555555665 66665555543 12345566666666666666666666665
Q ss_pred CC--CCChhhHHHHHHHHHhC---------CChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhcc--------ccHHHH
Q 037713 197 AP--VRNLFLWTALVSGLVQS---------RNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANF--------AVLELG 257 (610)
Q Consensus 197 ~~--~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~--------~~~~~a 257 (610)
.. .|+...|..+...|... |++++|++.|++..+.. |.+...+..+..++... |++++|
T Consensus 163 al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 163 ALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 43 34456777777778887 88899999999888876 25788888888888888 899999
Q ss_pred HHHHHHHHHhCCC--CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 037713 258 KQIHGLVIALGYE--SCLFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEM 330 (610)
Q Consensus 258 ~~~~~~~~~~~~~--~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m 330 (610)
...++.+.+.... .+...+..+..+|.+.|++++|.+.|++..+ .+...|..+...+...|++++|++.+.++
T Consensus 241 ~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 241 LSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999887421 4788899999999999999999999998763 35678889999999999999999877654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.17 E-value=3.4e-08 Score=99.11 Aligned_cols=267 Identities=10% Similarity=-0.033 Sum_probs=150.8
Q ss_pred HHHHHHcCCCchHHHHHHHHhHHCCCCCCChh----hHHHHHHHHhccCCcHHHHHHHHHHHhcCC-CCC----hhHHHH
Q 037713 75 ILTAYNQANLPQKTISIFSTMLALDKLQPDHF----VFASLVKACGSLGATRLGKQVHACFVLSPF-CDD----DVVKSS 145 (610)
Q Consensus 75 li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~----~~~~~~ 145 (610)
....+...|++++|...+++..... ...+.. .+..+...+...|+++.|...+.+.++..- ..+ ..+++.
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 3345567888888888888877643 111221 344455566777888888888887765321 111 123455
Q ss_pred HHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCC----ChhhHHHHHHHHHhCCChHHH
Q 037713 146 LVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR----NLFLWTALVSGLVQSRNEIDA 221 (610)
Q Consensus 146 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A 221 (610)
+...|...|++++|...++ ++.++......+ ....+..+...+...|++++|
T Consensus 99 la~~~~~~G~~~~A~~~~~------------------------~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 154 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQE------------------------KAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEA 154 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHH------------------------HHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHCCCHHHHHHHHH------------------------HHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHH
Confidence 6667777788877777764 333444433322 123455666777788888888
Q ss_pred HHHHHHHHHcCCC--CC-CHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCch-hHHH-----HHHHHHHhcCCHHHH
Q 037713 222 FYSFIEMRREGVD--IV-DPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCL-FISN-----AIVDMYAKCSDIIAA 292 (610)
Q Consensus 222 ~~~~~~m~~~~~~--~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~li~~y~~~g~~~~A 292 (610)
...+++....... ++ ...++..+...+...|+++.|...++......-.++. ..+. ..+..+...|++++|
T Consensus 155 ~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 234 (373)
T 1hz4_A 155 EASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAA 234 (373)
T ss_dssp HHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHH
Confidence 8888877654321 01 1234555666667777777777777776654211111 1111 233446677777777
Q ss_pred HHHHHhcCCCC-------hhHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHhccCCHHHHHH
Q 037713 293 KDIFGRMRRKD-------VVSWTSIIVGTAQHGQAEETLALYDEMVSA----GVKPNE-VTFVGLIYACSHVGLVGKGRK 360 (610)
Q Consensus 293 ~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~ 360 (610)
...+++...++ ...+..+...+...|++++|...+++.... |..++. .++..+..++...|+.++|..
T Consensus 235 ~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 314 (373)
T 1hz4_A 235 ANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQR 314 (373)
T ss_dssp HHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHH
Confidence 77777765432 113445556666667777766666665432 111111 133334444555555555555
Q ss_pred HHHHhH
Q 037713 361 LFKSMI 366 (610)
Q Consensus 361 ~~~~~~ 366 (610)
.++...
T Consensus 315 ~l~~al 320 (373)
T 1hz4_A 315 VLLDAL 320 (373)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.7e-08 Score=101.55 Aligned_cols=218 Identities=10% Similarity=0.053 Sum_probs=149.4
Q ss_pred HHHhcCCHHHHHHHHhhCCC-----C----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-----CHhHHHHHH
Q 037713 180 AYARSGRKKDAMEIFEQAPV-----R----NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIV-----DPLVLSSIV 245 (610)
Q Consensus 180 ~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-----~~~t~~~ll 245 (610)
.+...|++++|...|++... + ...++..+...|...|++++|+..+.+..+.....+ ...++..+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 34555666666666554321 1 124666777777788888888877777665311101 234566777
Q ss_pred HHHhccccHHHHHHHHHHHHHh----CCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----C---ChhHHHHHHH
Q 037713 246 GACANFAVLELGKQIHGLVIAL----GYE-SCLFISNAIVDMYAKCSDIIAAKDIFGRMRR-----K---DVVSWTSIIV 312 (610)
Q Consensus 246 ~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~---~~~~~~~li~ 312 (610)
.++...|+++.|...+..+.+. +.+ ....++..+...|...|++++|...|++..+ . ...++..+..
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 7788888888888888777664 111 1235677788889999999999888887754 2 2456778888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCC---CCC-HHHHHHHHHHHhccCC---HHHHHHHHHHhHHhcCCCCC-HHHHHHHHHH
Q 037713 313 GTAQHGQAEETLALYDEMVSAGV---KPN-EVTFVGLIYACSHVGL---VGKGRKLFKSMIEDYGITPS-LQHYTCLLDL 384 (610)
Q Consensus 313 ~~~~~g~~~~A~~l~~~m~~~g~---~p~-~~t~~~ll~a~~~~g~---~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~ 384 (610)
.|.+.|++++|...+++..+... .|. ...+..+...+...++ +.+|..+++.. +..|+ ...+..+...
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~----~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK----NLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC----CChhHHHHHHHHHHHH
Confidence 99999999999999999876421 122 3455666667777888 77777777663 33333 3567788999
Q ss_pred HHhcCCHHHHHHHHHhC
Q 037713 385 LSRSGHLDEAENLIKAM 401 (610)
Q Consensus 385 ~~~~g~~~~A~~~~~~m 401 (610)
|.+.|++++|.+.|++.
T Consensus 346 y~~~g~~~~A~~~~~~a 362 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKV 362 (378)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 99999999999988764
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.08 E-value=6.2e-10 Score=106.64 Aligned_cols=165 Identities=15% Similarity=0.184 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc-----CCC
Q 037713 305 VSWTSIIVGTAQHGQAEETLALYDEMVSA------GVKP-NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY-----GIT 372 (610)
Q Consensus 305 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~ 372 (610)
.+|..+...|...|++++|+..|++.... .-.| ...++..+...+...|++++|..+++++.+.. +..
T Consensus 86 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 165 (283)
T 3edt_B 86 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD 165 (283)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34455555555555555555555554432 1111 23455556666666666666666666665420 011
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHhC-C---------CCCC-HHHHHHHHHHHHhcCc------hhHHHHHHHHHh
Q 037713 373 P-SLQHYTCLLDLLSRSGHLDEAENLIKAM-P---------FEPD-EPTWAALLSACKHHRN------TEMGTRVANHLL 434 (610)
Q Consensus 373 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~---------~~p~-~~~~~~ll~~~~~~g~------~~~a~~~~~~~~ 434 (610)
| ....+..+...|.+.|++++|.+.+++. . ..|. ...|..+.......+. +..+...++...
T Consensus 166 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (283)
T 3edt_B 166 PNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACK 245 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC
Confidence 2 2355666666666677777766666554 1 1222 2222222222222222 222222222222
Q ss_pred cCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhh
Q 037713 435 SLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 435 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 469 (610)
...|..+.++..++.+|...|++++|.+.++...+
T Consensus 246 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 246 VDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 23344455677788888888888888887776543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.5e-09 Score=117.58 Aligned_cols=164 Identities=13% Similarity=0.121 Sum_probs=132.7
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037713 271 SCLFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIY 347 (610)
Q Consensus 271 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 347 (610)
.+...++.|...|.+.|++++|++.|++..+ .+..+|+.+...|.+.|++++|++.|++..+.... +...|..+..
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 3456778888888888888888888887753 35778888888899999999999999988875322 4778888888
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhH
Q 037713 348 ACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD-EPTWAALLSACKHHRNTEM 425 (610)
Q Consensus 348 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~ 425 (610)
++...|++++|.+.|++..+. -+-+...|..+..+|.+.|++++|++.|++. .+.|+ ...|..+...+...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 999999999999999888773 2335688889999999999999999999887 55564 6778888888999999999
Q ss_pred HHHHHHHHhcCC
Q 037713 426 GTRVANHLLSLK 437 (610)
Q Consensus 426 a~~~~~~~~~~~ 437 (610)
|.+.+++++++.
T Consensus 164 A~~~~~kal~l~ 175 (723)
T 4gyw_A 164 YDERMKKLVSIV 175 (723)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 999998887654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=3.3e-09 Score=102.66 Aligned_cols=200 Identities=11% Similarity=-0.003 Sum_probs=136.0
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHhcCChHHH
Q 037713 253 VLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR-----KD----VVSWTSIIVGTAQHGQAEET 323 (610)
Q Consensus 253 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A 323 (610)
+++.|...+..+ ...|...|++++|...|.+..+ .+ ..+|+.+...|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666666554 3456677777777777766542 11 45778888888888888888
Q ss_pred HHHHHHHHHcCC---CCC--HHHHHHHHHHHhcc-CCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHhcCCHHH
Q 037713 324 LALYDEMVSAGV---KPN--EVTFVGLIYACSHV-GLVGKGRKLFKSMIEDYGITPS----LQHYTCLLDLLSRSGHLDE 393 (610)
Q Consensus 324 ~~l~~~m~~~g~---~p~--~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~ 393 (610)
+..|++..+... .+. ..++..+..+|... |++++|...|++..+...-..+ ..++..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 888887765211 111 35778888889886 9999999999988764211111 3568888999999999999
Q ss_pred HHHHHHhC-CCCCC---H-----HHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcc-----hHhHHHHhh--hhcch
Q 037713 394 AENLIKAM-PFEPD---E-----PTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSS-----YILLSNVYA--SAAMW 457 (610)
Q Consensus 394 A~~~~~~m-~~~p~---~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~ 457 (610)
|...|++. ...|+ . ..|..+..++...|++++|...+++.++++|+.... +..++..|. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99999887 22332 1 156777778889999999999999999999875543 334555554 45667
Q ss_pred hHHHHHHHHH
Q 037713 458 QHVSKVRKLM 467 (610)
Q Consensus 458 ~~a~~~~~~m 467 (610)
++|.+.++.+
T Consensus 257 ~~A~~~~~~~ 266 (292)
T 1qqe_A 257 SEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHhccC
Confidence 7777766544
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.03 E-value=3.9e-09 Score=100.99 Aligned_cols=225 Identities=10% Similarity=0.032 Sum_probs=136.5
Q ss_pred HhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCC----ChhhHHHHHHHHHhCCChHHHHHHHH
Q 037713 151 AKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR----NLFLWTALVSGLVQSRNEIDAFYSFI 226 (610)
Q Consensus 151 ~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~ 226 (610)
...|++++|...|+ +|.+++.+...+ ...+|..+...|...|++++|+..|+
T Consensus 12 ~~~~~~~~A~~~~~------------------------~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 67 (283)
T 3edt_B 12 SGLVPRGSAVPLCK------------------------QALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLN 67 (283)
T ss_dssp -CCSCSSSHHHHHH------------------------HHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH------------------------HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 45677777777764 455555544322 23566677777777777777777777
Q ss_pred HHHHc------CCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHh------C-CCCchhHHHHHHHHHHhcCCHHHHH
Q 037713 227 EMRRE------GVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIAL------G-YESCLFISNAIVDMYAKCSDIIAAK 293 (610)
Q Consensus 227 ~m~~~------~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~li~~y~~~g~~~~A~ 293 (610)
+..+. +-.|....++..+...+...|+++.|...+..+.+. . .+....++..+...|...|++++|.
T Consensus 68 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 147 (283)
T 3edt_B 68 DALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVE 147 (283)
T ss_dssp HHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHH
Confidence 76654 222134556677777777778888887777777665 1 1234566777888888888888888
Q ss_pred HHHHhcCCC-----------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHc-------CCCCCH-HHHHHHHHHHhccCC
Q 037713 294 DIFGRMRRK-----------DVVSWTSIIVGTAQHGQAEETLALYDEMVSA-------GVKPNE-VTFVGLIYACSHVGL 354 (610)
Q Consensus 294 ~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~p~~-~t~~~ll~a~~~~g~ 354 (610)
..|++..+. ...++..+...|...|++++|...|++..+. ...|.. ..+..+.......+.
T Consensus 148 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (283)
T 3edt_B 148 YYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDK 227 (283)
T ss_dssp HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCc
Confidence 887766431 2456777888888888888888888887653 112221 222222222222222
Q ss_pred ------HHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037713 355 ------VGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401 (610)
Q Consensus 355 ------~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 401 (610)
+.++...+..... ..+.....+..+...|.+.|++++|..++++.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 278 (283)
T 3edt_B 228 RRDSAPYGEYGSWYKACKV--DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCA 278 (283)
T ss_dssp CCC------------CCCC--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3333333332211 11223467888899999999999999988764
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.01 E-value=3.1e-08 Score=93.92 Aligned_cols=205 Identities=9% Similarity=0.017 Sum_probs=124.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C---hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC-HHHHH
Q 037713 272 CLFISNAIVDMYAKCSDIIAAKDIFGRMRR--K-D---VVSWTSIIVGTAQHGQAEETLALYDEMVSAGV-KPN-EVTFV 343 (610)
Q Consensus 272 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~-~~t~~ 343 (610)
+...+-.+...+.+.|++++|...|+++.+ | + ...+..+..+|.+.|++++|+..|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 344555556666666666666666666653 2 2 44556666666666666666666666665421 111 33444
Q ss_pred HHHHHHhc--------cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037713 344 GLIYACSH--------VGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLS 415 (610)
Q Consensus 344 ~ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~ 415 (610)
.+..++.. .|++++|...|+.+.+.+.- +......+.......+.+ ...+..+..
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~a~~~~~~~~~~~---------------~~~~~~la~ 156 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN--HELVDDATQKIRELRAKL---------------ARKQYEAAR 156 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT--CTTHHHHHHHHHHHHHHH---------------HHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC--chhHHHHHHHHHHHHHHH---------------HHHHHHHHH
Confidence 55555555 66666666666666654211 111111111111000000 111356677
Q ss_pred HHHhcCchhHHHHHHHHHhcCCCCCC---cchHhHHHHhhhh----------cchhHHHHHHHHHhhCCCccCCcccEEE
Q 037713 416 ACKHHRNTEMGTRVANHLLSLKPEDP---SSYILLSNVYASA----------AMWQHVSKVRKLMSVMEVKKEPGYSYIE 482 (610)
Q Consensus 416 ~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~~~~~~~s~~~ 482 (610)
.+...|++++|+..++++++..|+++ ..+..++.+|... |++++|...++.+.+...
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p---------- 226 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP---------- 226 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT----------
T ss_pred HHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC----------
Confidence 79999999999999999999999854 4788899999877 899999999998865322
Q ss_pred ECCEEEEEEeccCCCCChHHHHHHHHHHHHHHHH
Q 037713 483 FGKGSHIFYAGETSHPLKDEIFELLTELDAEMKR 516 (610)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~ 516 (610)
.+|...+....+.++...+.+
T Consensus 227 -------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 -------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp -------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred -------------CChHHHHHHHHHHHHHHHHHH
Confidence 344455666666666665543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.99 E-value=1e-08 Score=99.09 Aligned_cols=167 Identities=7% Similarity=-0.044 Sum_probs=112.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCC-CC----
Q 037713 274 FISNAIVDMYAKCSDIIAAKDIFGRMRR-----KD----VVSWTSIIVGTAQH-GQAEETLALYDEMVSAGVK-PN---- 338 (610)
Q Consensus 274 ~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~-p~---- 338 (610)
.+++.+..+|.+.|++++|...|++..+ .+ ..+|+.+...|... |++++|+..|++..+.... .+
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~ 157 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence 4555666666666666666666655542 11 34677788888886 9999999998887653111 01
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH----
Q 037713 339 EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSL-----QHYTCLLDLLSRSGHLDEAENLIKAM-PFEPDEP---- 408 (610)
Q Consensus 339 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~---- 408 (610)
..++..+...+...|++++|...|+...+...-.+.. ..|..+..++...|++++|...|++. .+.|+..
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 237 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRE 237 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH
Confidence 3567888889999999999999999887742111221 25677888888999999999999887 5555422
Q ss_pred --HHHHHHHHHH--hcCchhHHHHHHHHHhcCCCCC
Q 037713 409 --TWAALLSACK--HHRNTEMGTRVANHLLSLKPED 440 (610)
Q Consensus 409 --~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~~ 440 (610)
.+..++.++. ..+++++|...|+++..++|..
T Consensus 238 ~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 238 SNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 3444555554 4567888888888888887754
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.2e-08 Score=96.71 Aligned_cols=203 Identities=10% Similarity=0.070 Sum_probs=147.0
Q ss_pred CCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C----Chh
Q 037713 235 IVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESC---LFISNAIVDMYAKCSDIIAAKDIFGRMRR--K----DVV 305 (610)
Q Consensus 235 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~----~~~ 305 (610)
+.+...+......+.+.|+++.|...++.+++... .+ ...+..+..+|.+.|++++|...|++..+ | ...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 36778888888899999999999999999988752 23 66788899999999999999999999864 3 145
Q ss_pred HHHHHHHHHHh--------cCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHH
Q 037713 306 SWTSIIVGTAQ--------HGQAEETLALYDEMVSAGVKPNE-VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQ 376 (610)
Q Consensus 306 ~~~~li~~~~~--------~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 376 (610)
++..+..++.. .|++++|+..|++..+.. |+. ... .+...+...... ...
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~--------------~a~~~~~~~~~~-----~~~ 149 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVD--------------DATQKIRELRAK-----LAR 149 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHH--------------HHHHHHHHHHHH-----HHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHH--------------HHHHHHHHHHHH-----HHH
Confidence 67778888888 999999999999998863 432 111 111111111111 112
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhc----------CchhHHHHHHHHHhcCCCCCC
Q 037713 377 HYTCLLDLLSRSGHLDEAENLIKAM-PFEPD----EPTWAALLSACKHH----------RNTEMGTRVANHLLSLKPEDP 441 (610)
Q Consensus 377 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~ 441 (610)
.+..+...|.+.|++++|...|++. ...|+ ...+..+..++... |++++|...++++++..|+++
T Consensus 150 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 150 KQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 3566778888999999999988887 22333 34566677777755 889999999999999999875
Q ss_pred c---chHhHHHHhhhhcchhH
Q 037713 442 S---SYILLSNVYASAAMWQH 459 (610)
Q Consensus 442 ~---~~~~l~~~~~~~g~~~~ 459 (610)
. +...+..++...+++++
T Consensus 230 ~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 230 LLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 3 34455555555555443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.96 E-value=8.9e-08 Score=91.09 Aligned_cols=56 Identities=7% Similarity=-0.033 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC-----CChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037713 277 NAIVDMYAKCSDIIAAKDIFGRMRR-----KDVVSWTSIIVGTAQHGQAEETLALYDEMVS 332 (610)
Q Consensus 277 ~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 332 (610)
..+...|...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3444555555555555555554421 1233444445555555555555555555544
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.96 E-value=1.2e-07 Score=90.27 Aligned_cols=78 Identities=13% Similarity=0.059 Sum_probs=41.1
Q ss_pred HHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCC-CCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 037713 221 AFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGY-ESCLFISNAIVDMYAKCSDIIAAKDIFGRM 299 (610)
Q Consensus 221 A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 299 (610)
|+..|++....+ . ++..++..+..++...|++++|.+++...+..+- ..+...+..++..|.+.|+.+.|.+.+++|
T Consensus 85 a~~~l~~l~~~~-~-~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLLKDK-Q-NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTTTTS-C-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-C-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 455555544433 1 4444444555555556666666666555544332 124445555556666666666666666555
Q ss_pred C
Q 037713 300 R 300 (610)
Q Consensus 300 ~ 300 (610)
.
T Consensus 163 ~ 163 (310)
T 3mv2_B 163 T 163 (310)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.95 E-value=2.4e-08 Score=83.29 Aligned_cols=130 Identities=15% Similarity=0.228 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHH
Q 037713 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLL 385 (610)
Q Consensus 306 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 385 (610)
+|..+...+...|++++|..+|+++.+... .+..++..+...+...|++++|..+++.+.+. .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 345555556666666666666666655421 24445555555555666666666666655542 122344445555555
Q ss_pred HhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCC
Q 037713 386 SRSGHLDEAENLIKAM-PFE-PDEPTWAALLSACKHHRNTEMGTRVANHLLSLKP 438 (610)
Q Consensus 386 ~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 438 (610)
.+.|++++|.+.++++ ... .+...+..+...+...|++++|...++++++.+|
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 5555555555555444 111 2344444455555555555555555555554444
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.95 E-value=5.8e-07 Score=93.23 Aligned_cols=368 Identities=10% Similarity=0.004 Sum_probs=206.5
Q ss_pred hHHHHHHHHHHHHhCCCCCCchHHHHHHHhhcCCChHHHHHHHccCC--CCCcchHHHHHHHHHcCCC-chHHHHHHHHh
Q 037713 19 ALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP--QRDHVSWASILTAYNQANL-PQKTISIFSTM 95 (610)
Q Consensus 19 ~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m 95 (610)
+..++.+++..+..- |. |+++.|+.+|++.. .|++..|..-+....+.+. .+....+|+..
T Consensus 11 i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~a 74 (493)
T 2uy1_A 11 LSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFT 74 (493)
T ss_dssp -CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHH
T ss_pred hHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 666777777776542 22 88999999998765 3788888888877766653 35567788877
Q ss_pred HHCCCCCC-ChhhHHHHHHHHh----ccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCC
Q 037713 96 LALDKLQP-DHFVFASLVKACG----SLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKN 170 (610)
Q Consensus 96 ~~~~~~~p-d~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 170 (610)
...-+..| +...|...+..+. ..++.+.+..+|+.+++.+...-...|......-. ......+.++..+..
T Consensus 75 l~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~-~~~~~~~~~~~~~~~--- 150 (493)
T 2uy1_A 75 LGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFEL-ELNKITGKKIVGDTL--- 150 (493)
T ss_dssp HHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHH-HHCHHHHHHHHHHHH---
T ss_pred HHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHH-HhccccHHHHHHHHh---
Confidence 76411333 4455555555433 23567788889998887432211222332222111 111222222222110
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhhCC----CCChhhHHHHHHHHHhCCC-------hHHHHHHHHHHHHcCCCCCCHh
Q 037713 171 SVSWTAMLSAYARSGRKKDAMEIFEQAP----VRNLFLWTALVSGLVQSRN-------EIDAFYSFIEMRREGVDIVDPL 239 (610)
Q Consensus 171 ~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~~~~~p~~~ 239 (610)
+.+..|..+++.+. ..+...|...+.--..++. .+.+..+|+++..... .++.
T Consensus 151 --------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p--~~~~ 214 (493)
T 2uy1_A 151 --------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFY--YAEE 214 (493)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT--TCHH
T ss_pred --------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCC--CCHH
Confidence 11222222222111 1234456555554332211 3456778888887652 5577
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH-HHHHHhcC------------CCChhH
Q 037713 240 VLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAA-KDIFGRMR------------RKDVVS 306 (610)
Q Consensus 240 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A-~~~~~~~~------------~~~~~~ 306 (610)
.|...+.-+.+.|+.+.|+.+++.++.. +.+...+.. |+...+.++. ..+.+... ......
T Consensus 215 lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l 288 (493)
T 2uy1_A 215 VYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLL 288 (493)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHH
Confidence 7777777778888999999999999888 444444432 2222111111 11111110 011245
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHH
Q 037713 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSH-VGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLL 385 (610)
Q Consensus 307 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 385 (610)
|...+....+.+..+.|..+|++. .. ..++...|......-.. .++.+.|..+|+...+.++ .++..+...++..
T Consensus 289 w~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~--~~~~~~~~yid~e 364 (493)
T 2uy1_A 289 RINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP--DSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT--TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC--CCHHHHHHHHHHH
Confidence 666666666677788888888887 32 12234444322211111 2358888888888877543 2344566677777
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHh
Q 037713 386 SRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLL 434 (610)
Q Consensus 386 ~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 434 (610)
.+.|+.+.|..+|++.. .....|...+.--..+|+.+.+..++++..
T Consensus 365 ~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 365 LRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 77888888888888872 246667777766667777777777776665
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.93 E-value=4.8e-08 Score=90.37 Aligned_cols=183 Identities=11% Similarity=0.018 Sum_probs=109.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCH-HHHHHH
Q 037713 274 FISNAIVDMYAKCSDIIAAKDIFGRMRR--KD----VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVK-PNE-VTFVGL 345 (610)
Q Consensus 274 ~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~-~t~~~l 345 (610)
..+..+...+.+.|++++|...|+++.+ |+ ...+..+..+|.+.|++++|+..|++..+.... |.. ..+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 3444556667777777777777777653 32 245666677777777777777777777664322 111 133333
Q ss_pred HHHHhc------------------cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH
Q 037713 346 IYACSH------------------VGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDE 407 (610)
Q Consensus 346 l~a~~~------------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~ 407 (610)
..++.. .|+.++|...|+.+.+.+. -+...+.....+. ...... .
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P--~~~~a~~a~~~l~----~~~~~~-----------~ 147 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYP--NSQYTTDATKRLV----FLKDRL-----------A 147 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCT--TCTTHHHHHHHHH----HHHHHH-----------H
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCc--CChhHHHHHHHHH----HHHHHH-----------H
Confidence 333332 3444555555555444211 1111111110000 000000 0
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCC---cchHhHHHHhhhhcchhHHHHHHHHHhhCCCc
Q 037713 408 PTWAALLSACKHHRNTEMGTRVANHLLSLKPEDP---SSYILLSNVYASAAMWQHVSKVRKLMSVMEVK 473 (610)
Q Consensus 408 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 473 (610)
.....+...+...|++++|+..++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+..
T Consensus 148 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 148 KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 0112345568889999999999999999999875 56889999999999999999999988776543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.92 E-value=1.8e-08 Score=84.07 Aligned_cols=128 Identities=15% Similarity=0.178 Sum_probs=112.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHH
Q 037713 341 TFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PF-EPDEPTWAALLSACK 418 (610)
Q Consensus 341 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~ 418 (610)
.+..+...+...|++++|..+++.+.+. .+.+...+..+...+...|++++|...++++ .. +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 4667788899999999999999999874 3446788889999999999999999999988 22 335778888889999
Q ss_pred hcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhC
Q 037713 419 HHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 419 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 470 (610)
..|++++|...++++++..|.++..+..++.+|...|++++|.+.++.+.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 9999999999999999999998899999999999999999999999987653
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.1e-09 Score=94.29 Aligned_cols=140 Identities=11% Similarity=0.037 Sum_probs=100.4
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 037713 313 GTAQHGQAEETLALYDEMVSAGVKPN-EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHL 391 (610)
Q Consensus 313 ~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 391 (610)
.+...|++++|+..+++.... .|+ ...+..+...|.+.|++++|.+.|++..+. -+-+...|..+..+|.+.|++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCch
Confidence 344456667777776665432 222 334556667777777777777777777663 233567778888888888888
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHH-HHHHHhcCCCCCCcchHhHHHHhhhhcc
Q 037713 392 DEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTR-VANHLLSLKPEDPSSYILLSNVYASAAM 456 (610)
Q Consensus 392 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 456 (610)
++|...|++. .+.| +...|..+...+...|+.++|.+ .++++++++|+++.+|.....++.+.|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 8888888776 4455 46778888888888998876655 4689999999999999888888887774
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.89 E-value=9.1e-09 Score=111.85 Aligned_cols=169 Identities=11% Similarity=0.001 Sum_probs=123.2
Q ss_pred HhcCCHHHHHHHHHhcC-----------CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 037713 284 AKCSDIIAAKDIFGRMR-----------RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHV 352 (610)
Q Consensus 284 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 352 (610)
...|++++|.+.|++.. ..+...|..+...|.+.|++++|++.|++..+... -+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHHc
Confidence 56777888888777765 23566777777888888888888888888776532 2566777777788888
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHH
Q 037713 353 GLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVA 430 (610)
Q Consensus 353 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 430 (610)
|++++|...|++..+. .+.+...|..+..+|.+.|++++ .+.|++. ...| +...|..+..++...|++++|+..+
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888888887763 23345777778888888888888 7777776 3344 4667777777888888888888888
Q ss_pred HHHhcCCCCCCcchHhHHHHhhhhcc
Q 037713 431 NHLLSLKPEDPSSYILLSNVYASAAM 456 (610)
Q Consensus 431 ~~~~~~~p~~~~~~~~l~~~~~~~g~ 456 (610)
+++++++|++..++..++.+|...|+
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhhcccCcccHHHHHHHHHHHHccCC
Confidence 88888888877788888888766554
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=6.3e-08 Score=93.27 Aligned_cols=175 Identities=7% Similarity=-0.026 Sum_probs=133.7
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 037713 289 IIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368 (610)
Q Consensus 289 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 368 (610)
.+...+.+......+...+..+...+.+.|++++|+..|++..+.... +...+..+..++...|++++|...++.+...
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 344445555555455666777888888899999999999998876322 5677888888999999999999999888653
Q ss_pred cCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC--Ccc
Q 037713 369 YGITPSLQHYTCL-LDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED--PSS 443 (610)
Q Consensus 369 ~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~ 443 (610)
.|+....... ...+.+.++.++|.+.+++. ...| +...+..+...+...|++++|+..++++++.+|++ ...
T Consensus 181 ---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 181 ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp ---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred ---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 4554333222 23366777888888888776 3344 57788888899999999999999999999999987 778
Q ss_pred hHhHHHHhhhhcchhHHHHHHHHH
Q 037713 444 YILLSNVYASAAMWQHVSKVRKLM 467 (610)
Q Consensus 444 ~~~l~~~~~~~g~~~~a~~~~~~m 467 (610)
+..|+.+|...|+.++|...+++.
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHH
Confidence 999999999999999988877654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.5e-07 Score=102.21 Aligned_cols=190 Identities=11% Similarity=0.030 Sum_probs=146.0
Q ss_pred hccccHHHHHHHHHHHH--------HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhc
Q 037713 249 ANFAVLELGKQIHGLVI--------ALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQH 317 (610)
Q Consensus 249 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 317 (610)
...|++++|.+.++.+. +. .+.+...+..+...|.+.|++++|...|++..+ .+...|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67788888888888887 32 244567888889999999999999999998874 4778899999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037713 318 GQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENL 397 (610)
Q Consensus 318 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 397 (610)
|++++|++.|++..+.... +...+..+..++...|++++ .+.|+++.+. -+.+...|..+..+|.+.|++++|.+.
T Consensus 481 g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999886322 56778889999999999999 9999998874 344568899999999999999999999
Q ss_pred HHhC-CCCCC-HHHHHHHHHHHHhcCc-----hhHHHHHHHHHhcCCCCCCcc
Q 037713 398 IKAM-PFEPD-EPTWAALLSACKHHRN-----TEMGTRVANHLLSLKPEDPSS 443 (610)
Q Consensus 398 ~~~m-~~~p~-~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~~ 443 (610)
|++. ...|+ ...|..+..++...++ .+...+..+.+.++.+.++..
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~ 609 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRV 609 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTH
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHH
Confidence 9998 67776 4567677777666554 233444444444555554443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.80 E-value=2.8e-07 Score=84.26 Aligned_cols=172 Identities=9% Similarity=-0.020 Sum_probs=125.3
Q ss_pred HHHHHHhcCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC----CHHHHHHHHHHhH
Q 037713 292 AKDIFGRMRR-KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVG----LVGKGRKLFKSMI 366 (610)
Q Consensus 292 A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~~~ 366 (610)
|.+.|++..+ .++.++..+...|...+++++|+.+|++..+.| +...+..|...|.. + ++++|.++|+...
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 3344444332 366677777777777788888888888877764 45666666666766 5 7888888888876
Q ss_pred HhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh----cCchhHHHHHHHHHh
Q 037713 367 EDYGITPSLQHYTCLLDLLSR----SGHLDEAENLIKAM-PFEPD---EPTWAALLSACKH----HRNTEMGTRVANHLL 434 (610)
Q Consensus 367 ~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~----~g~~~~a~~~~~~~~ 434 (610)
+. .+...+..|..+|.. .+++++|.+.|++. ...|+ ...+..|...|.. .++.++|...++++.
T Consensus 81 ~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 52 356677777777776 77888888888877 44443 6777778777777 778999999999988
Q ss_pred cCCCCCCcchHhHHHHhhhh-c-----chhHHHHHHHHHhhCCC
Q 037713 435 SLKPEDPSSYILLSNVYASA-A-----MWQHVSKVRKLMSVMEV 472 (610)
Q Consensus 435 ~~~p~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~~~ 472 (610)
+. |.++.++..|+.+|... | ++++|.+.++...+.|.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 87 55667888888888764 3 78899998888776654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.1e-07 Score=86.66 Aligned_cols=127 Identities=9% Similarity=0.055 Sum_probs=96.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcC
Q 037713 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSG 389 (610)
Q Consensus 310 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 389 (610)
+...|.+.|++++|+..|++..+.... +...+..+..++...|++++|...|++..+. -+.+...|..+...|...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHh
Confidence 888889999999999999998886322 6778888999999999999999999999874 3445678888888886665
Q ss_pred C--HHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC
Q 037713 390 H--LDEAENLIKAMPFEPDE--PTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440 (610)
Q Consensus 390 ~--~~~A~~~~~~m~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 440 (610)
. .+.+...++... .|+. ..+..+..++...|++++|+..|++++++.|++
T Consensus 137 ~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 137 EQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 4 445566666652 3443 344455556777899999999999999999963
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.78 E-value=3e-07 Score=89.44 Aligned_cols=220 Identities=9% Similarity=0.009 Sum_probs=154.0
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 037713 214 QSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAK 293 (610)
Q Consensus 214 ~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 293 (610)
..|++++|.+++++..+... .. .+...++++.|...+..+ ...|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~--~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK--TS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC--CC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc--cc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 35778889998888776431 11 011146677776666543 45677888988888
Q ss_pred HHHHhcCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCC--HHHHHHHHHHHhccCCHHHHH
Q 037713 294 DIFGRMRR-----KD----VVSWTSIIVGTAQHGQAEETLALYDEMVSAG---VKPN--EVTFVGLIYACSHVGLVGKGR 359 (610)
Q Consensus 294 ~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~--~~t~~~ll~a~~~~g~~~~a~ 359 (610)
..|.+..+ .+ ..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+...|.. |++++|.
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 88877653 12 4578888899999999999999999876531 1122 3577888888988 9999999
Q ss_pred HHHHHhHHhcCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHhcCchhHHH
Q 037713 360 KLFKSMIEDYGITP----SLQHYTCLLDLLSRSGHLDEAENLIKAM-PF---EPD----EPTWAALLSACKHHRNTEMGT 427 (610)
Q Consensus 360 ~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p~----~~~~~~ll~~~~~~g~~~~a~ 427 (610)
..|++..+.+.-.. ...++..+...|.+.|++++|.+.|++. .+ .++ ...+..+...+...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99998876421111 1467888999999999999999999887 11 122 235666666778889999999
Q ss_pred HHHHHHhcCCCCCCcc-----hHhHHHHhhhhcchhHHHH
Q 037713 428 RVANHLLSLKPEDPSS-----YILLSNVYASAAMWQHVSK 462 (610)
Q Consensus 428 ~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~ 462 (610)
..+++.+ ++|....+ ...++..| ..|+.+.+.+
T Consensus 216 ~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 216 KCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 9999999 98875433 22344444 4566555544
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=1.4e-07 Score=100.57 Aligned_cols=160 Identities=12% Similarity=0.036 Sum_probs=120.7
Q ss_pred cCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 037713 286 CSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF 362 (610)
Q Consensus 286 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 362 (610)
.|++++|.+.|++..+ .+...|..+...|.+.|++++|++.|++..+... -+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3677888888887764 3567888888899999999999999999887632 25778888889999999999999999
Q ss_pred HHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CchhHHHHHHHHHhcCC
Q 037713 363 KSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHH---RNTEMGTRVANHLLSLK 437 (610)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~ 437 (610)
++..+. .+.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|.+.++++++.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 998874 3445788889999999999999999999887 3344 467788888889999 99999999999999999
Q ss_pred CCCCcchHhHH
Q 037713 438 PEDPSSYILLS 448 (610)
Q Consensus 438 p~~~~~~~~l~ 448 (610)
|.+...|..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 98888777666
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.73 E-value=6.4e-06 Score=79.05 Aligned_cols=227 Identities=12% Similarity=0.014 Sum_probs=155.7
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccc--cHHHHHHHHHHHHHhCCCCchhHHHHHHHHH----Hhc---
Q 037713 216 RNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFA--VLELGKQIHGLVIALGYESCLFISNAIVDMY----AKC--- 286 (610)
Q Consensus 216 g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y----~~~--- 286 (610)
...++|++++..++..+. -+...++.--.+....+ .++++...++.+.... +.+..+|+.-...+ .+.
T Consensus 47 e~s~~aL~~t~~~L~~nP--~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 47 EYSERALHITELGINELA--SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp CCSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHHHHCc--HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcccc
Confidence 334678888888877662 35555666666666666 7777777777777764 33444555444444 444
Q ss_pred CCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC------H
Q 037713 287 SDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAE--ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGL------V 355 (610)
Q Consensus 287 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~------~ 355 (610)
+++++++.+++.+.+ +|..+|+--.-.+.+.|.++ ++++.++++.+.... |...|+.-.....+.+. +
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhH
Confidence 678888888888763 57778888777777888877 888888888887554 66777766666666665 7
Q ss_pred HHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHhcCchhHHHHH
Q 037713 356 GKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDE-AENLIKAM-PF----EPDEPTWAALLSACKHHRNTEMGTRV 429 (610)
Q Consensus 356 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m-~~----~p~~~~~~~ll~~~~~~g~~~~a~~~ 429 (610)
+++++.+..++.. -+-|...|+.+-..+.+.|+..+ +.++.++. .. ..+...+..+...+.+.|+.++|.++
T Consensus 203 ~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 203 DEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 7888888887763 34567778777777877777444 44566655 21 23567777787888888888888888
Q ss_pred HHHHhc-CCCCCCcchHhHH
Q 037713 430 ANHLLS-LKPEDPSSYILLS 448 (610)
Q Consensus 430 ~~~~~~-~~p~~~~~~~~l~ 448 (610)
++.+.+ .+|.....+...+
T Consensus 281 ~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 281 YDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHhccChHHHHHHHHHH
Confidence 888875 6887655554433
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=9.7e-08 Score=101.74 Aligned_cols=152 Identities=14% Similarity=0.016 Sum_probs=117.3
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037713 317 HGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAEN 396 (610)
Q Consensus 317 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 396 (610)
.|++++|++.|++..+... -+...+..+...+...|++++|.+.+++..+. .+.+...|..+...|.+.|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4788999999999887532 25788899999999999999999999999763 34457899999999999999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhh---cchhHHHHHHHHHhhCC
Q 037713 397 LIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASA---AMWQHVSKVRKLMSVME 471 (610)
Q Consensus 397 ~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~a~~~~~~m~~~~ 471 (610)
.+++. ...| +...|..+...+...|++++|.+.++++++.+|+++..+..++.+|... |++++|.+.++...+.+
T Consensus 79 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 79 LLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 99987 4444 5778899999999999999999999999999999999999999999999 99999999888775543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.1e-06 Score=80.04 Aligned_cols=145 Identities=11% Similarity=-0.037 Sum_probs=90.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 037713 276 SNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLV 355 (610)
Q Consensus 276 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 355 (610)
+..+...|.+.|++++|...|++...++...|..+...|...|++++|+..|++..+.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 34456667777788888888777777777777777777777777777777777776653 22456666677777777777
Q ss_pred HHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHh
Q 037713 356 GKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPD-EPTWAALLSACKHHRNTEMGTRVANHLL 434 (610)
Q Consensus 356 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 434 (610)
++|...|+...+...-.+... +...| +...|+ ...+..+..++...|++++|...+++++
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~--------~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLID--------YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEE--------CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCccHHH--------HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 777777777665211111000 00000 012222 3456666666777777777777777777
Q ss_pred cCCCCC
Q 037713 435 SLKPED 440 (610)
Q Consensus 435 ~~~p~~ 440 (610)
+..|++
T Consensus 149 ~~~p~~ 154 (213)
T 1hh8_A 149 SMKSEP 154 (213)
T ss_dssp TTCCSG
T ss_pred HcCccc
Confidence 777754
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.1e-07 Score=83.96 Aligned_cols=155 Identities=6% Similarity=-0.057 Sum_probs=87.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 037713 276 SNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHV 352 (610)
Q Consensus 276 ~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 352 (610)
...+...+.+.|++++|...|++..+ .+...|..+...+...|++++|+..|++.... .|+...+..+...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~---- 82 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKL---- 82 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHH----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHH----
Confidence 33445556666666666666666553 24555666666666666666666666655443 2222211111000
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHH
Q 037713 353 GLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVA 430 (610)
Q Consensus 353 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 430 (610)
. +...+...+|...+++. ...| +...+..+...+...|++++|...+
T Consensus 83 ------------------------------~-~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~ 131 (176)
T 2r5s_A 83 ------------------------------E-LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELL 131 (176)
T ss_dssp ------------------------------H-HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ------------------------------H-HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence 0 01111112234444443 2234 3566677777777777778888888
Q ss_pred HHHhcCCCCC--CcchHhHHHHhhhhcchhHHHHHHHHH
Q 037713 431 NHLLSLKPED--PSSYILLSNVYASAAMWQHVSKVRKLM 467 (610)
Q Consensus 431 ~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m 467 (610)
+++++.+|+. +..+..++.+|...|+.++|...++..
T Consensus 132 ~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 132 WNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 7777777753 446777777888888887777776654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.69 E-value=2.6e-07 Score=81.61 Aligned_cols=157 Identities=13% Similarity=0.036 Sum_probs=98.8
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHH-HHh
Q 037713 240 VLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR--KDVVSWTSIIVG-TAQ 316 (610)
Q Consensus 240 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~-~~~ 316 (610)
.+......+...|+++.|...++.+.+.. +.+...+..+...|.+.|++++|...|++... |+...+..+... +..
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHh
Confidence 45566777889999999999999887754 44678899999999999999999999999875 333333222111 112
Q ss_pred cCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037713 317 HGQAEETLALYDEMVSAGVKP-NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAE 395 (610)
Q Consensus 317 ~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 395 (610)
.+...+|+..|++..+. .| +...+..+..++...|++++|...|+.+.+...-..+...+..+...|...|+.++|.
T Consensus 87 ~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 87 QAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 22233456666666554 22 3555556666666666666666666665542111112345555555666666666555
Q ss_pred HHHH
Q 037713 396 NLIK 399 (610)
Q Consensus 396 ~~~~ 399 (610)
..|+
T Consensus 165 ~~y~ 168 (176)
T 2r5s_A 165 SKYR 168 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.67 E-value=3.9e-07 Score=84.12 Aligned_cols=186 Identities=12% Similarity=0.037 Sum_probs=133.1
Q ss_pred CHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-h---hHHH
Q 037713 237 DPLVLSSIVGACANFAVLELGKQIHGLVIALGYES--CLFISNAIVDMYAKCSDIIAAKDIFGRMRR--KD-V---VSWT 308 (610)
Q Consensus 237 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~---~~~~ 308 (610)
++..+......+...|+++.|...++.+++..... ....+..+..+|.+.|++++|...|++..+ |+ . .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 44556667778889999999999999999874322 235778889999999999999999999863 32 2 2455
Q ss_pred HHHHHHHh------------------cCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 037713 309 SIIVGTAQ------------------HGQAEETLALYDEMVSAGVKPNEV-TFVGLIYACSHVGLVGKGRKLFKSMIEDY 369 (610)
Q Consensus 309 ~li~~~~~------------------~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 369 (610)
.+..++.. .|+.++|+..|++..+. .|+.. ..... .....+...
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~--------------~~l~~~~~~- 145 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDAT--------------KRLVFLKDR- 145 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHH--------------HHHHHHHHH-
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHH--------------HHHHHHHHH-
Confidence 55555554 57899999999999876 44432 22111 111111110
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcc
Q 037713 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD----EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSS 443 (610)
Q Consensus 370 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 443 (610)
.......+...|.+.|++++|...|+++ ...|+ ...+..+..++.+.|+.++|.+.++.+....|++...
T Consensus 146 ----~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 146 ----LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp ----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred ----HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 0112245677889999999999999987 33444 2467788889999999999999999999988876543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.66 E-value=1e-06 Score=80.18 Aligned_cols=183 Identities=13% Similarity=0.014 Sum_probs=111.1
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCCH-hHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 037713 207 ALVSGLVQSRNEIDAFYSFIEMRREGVDIVDP-LVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAK 285 (610)
Q Consensus 207 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 285 (610)
.....+...|++++|+..|++..+.. |+. ..+... . ... .........+.+...|.+
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~~-~-~~~-----------------~~~~~~~~~~~lg~~~~~ 66 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIALN---IDRTEMYYWT-N-VDK-----------------NSEISSKLATELALAYKK 66 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC---HHHHHHHHHH-H-SCT-----------------TSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC---CCChHHHHHh-h-hcc-----------------hhhhhHHHHHHHHHHHHH
Confidence 34456677888888888888887765 332 222210 0 000 000112233457777788
Q ss_pred cCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC--HHHHHH
Q 037713 286 CSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGL--VGKGRK 360 (610)
Q Consensus 286 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~--~~~a~~ 360 (610)
.|++++|...|++..+ .+...|..+...|...|++++|+..|++..+... -+..++..+..++...|. .+.+..
T Consensus 67 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~~~~~~~~~ 145 (208)
T 3urz_A 67 NRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYYLTAEQEKKKLET 145 (208)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 8888888888877653 3567788888888888888888888888877532 246677777776655543 333444
Q ss_pred HHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 037713 361 LFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPDEPTWAALLS 415 (610)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~ 415 (610)
.+.... ...|....+..+..++...|++++|...|++. ...|+......+..
T Consensus 146 ~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 146 DYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp HHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 444432 22222233444555666778888888888876 67777665554443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=1.7e-06 Score=83.17 Aligned_cols=163 Identities=8% Similarity=-0.018 Sum_probs=102.5
Q ss_pred CCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHH-HHH
Q 037713 236 VDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR--KDVVSWTS-IIV 312 (610)
Q Consensus 236 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~ 312 (610)
.+...+..+...+...|+++.|...++.+.+.. +.+...+..+...|.+.|++++|...|+++.. |+...... ...
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 444445555555666666666666666666553 33556677777778888888888888887764 44332222 222
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 037713 313 GTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLD 392 (610)
Q Consensus 313 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 392 (610)
.+...++.++|+..|++..... +.+...+..+..++...|++++|...|..+.+...-..+...+..++..|...|+.+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 3556667777777777777653 225666777777777777777777777777764211122566777777777777777
Q ss_pred HHHHHHHh
Q 037713 393 EAENLIKA 400 (610)
Q Consensus 393 ~A~~~~~~ 400 (610)
+|...+++
T Consensus 273 ~a~~~~r~ 280 (287)
T 3qou_A 273 ALASXYRR 280 (287)
T ss_dssp HHHHHHHH
T ss_pred cHHHHHHH
Confidence 76666553
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=1.6e-08 Score=86.96 Aligned_cols=121 Identities=11% Similarity=0.008 Sum_probs=99.0
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 037713 345 LIYACSHVGLVGKGRKLFKSMIEDYGITPS-LQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHR 421 (610)
Q Consensus 345 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g 421 (610)
|...+...|++++|+..++.... ..|+ ...+..+...|.+.|++++|.+.|++. .+.| +...|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 34455667889999998887743 3343 345667899999999999999999988 5555 5788999999999999
Q ss_pred chhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHH-HHHHh
Q 037713 422 NTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKV-RKLMS 468 (610)
Q Consensus 422 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~ 468 (610)
++++|+..|+++++++|+++.++..++.+|.+.|++++|.+. ++...
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al 127 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAA 127 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887765 45554
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.65 E-value=5.8e-06 Score=79.38 Aligned_cols=213 Identities=15% Similarity=0.153 Sum_probs=170.9
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC--CHHHHHHHHHhcCC---CChhHHHHHHHHH----Hhc---CCh
Q 037713 253 VLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS--DIIAAKDIFGRMRR---KDVVSWTSIIVGT----AQH---GQA 320 (610)
Q Consensus 253 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~----~~~---g~~ 320 (610)
..++|....+.++..+ +.+..+|+.--..+...| ++++++++++.+.. ++..+|+.-...+ ... +++
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 3467888888888875 446678888888888888 99999999999874 4667787766665 555 789
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHH--HHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCC------HH
Q 037713 321 EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVG--KGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGH------LD 392 (610)
Q Consensus 321 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------~~ 392 (610)
++++++++++.+...+ |...|..-.-.+.+.|.++ ++.++++.+.+. -+-|...|+.-..++.+.|. ++
T Consensus 127 ~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 127 YREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHH
Confidence 9999999999987544 7888887777778888888 999999999985 34566778777777777776 89
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCch-hHHHHHHHHHhcCC---CCCCcchHhHHHHhhhhcchhHHHHHHHH
Q 037713 393 EAENLIKAM-PFEP-DEPTWAALLSACKHHRNT-EMGTRVANHLLSLK---PEDPSSYILLSNVYASAAMWQHVSKVRKL 466 (610)
Q Consensus 393 ~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 466 (610)
++++.++++ ...| |...|+.+...+.+.|+. +....+++++.+++ |.++.+...++++|.+.|+.++|.++++.
T Consensus 204 eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 204 EELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 999998877 3344 688899888888888874 44666888887766 77888899999999999999999999999
Q ss_pred Hhh
Q 037713 467 MSV 469 (610)
Q Consensus 467 m~~ 469 (610)
+.+
T Consensus 284 l~~ 286 (306)
T 3dra_A 284 LKS 286 (306)
T ss_dssp HHH
T ss_pred HHh
Confidence 875
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.62 E-value=3.7e-07 Score=75.53 Aligned_cols=109 Identities=8% Similarity=-0.010 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 037713 340 VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSAC 417 (610)
Q Consensus 340 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 417 (610)
..+......+.+.|++++|.+.|++..+. -+.+...|..+..+|.+.|++++|++.|++. .+.| +...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 44556667777777777777777777663 3345677777777777888888888777776 3334 466777788888
Q ss_pred HhcCchhHHHHHHHHHhcCCCCCCcchHhHHHH
Q 037713 418 KHHRNTEMGTRVANHLLSLKPEDPSSYILLSNV 450 (610)
Q Consensus 418 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 450 (610)
...|++++|++.|+++++++|+++.++..|.++
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 888888888888888888888887776666554
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.9e-06 Score=78.55 Aligned_cols=172 Identities=9% Similarity=-0.067 Sum_probs=107.0
Q ss_pred HHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCC----ChHHHHHH
Q 037713 87 KTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCG----LPNNARAV 162 (610)
Q Consensus 87 ~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~ 162 (610)
+|++.|++..+.| +...+..+-..+...+++++|...++...+.| +...+..|..+|.. + ++++|.+.
T Consensus 4 eA~~~~~~aa~~g----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 4 EPGSQYQQQAEAG----DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp CTTHHHHHHHHTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred hHHHHHHHHHHCC----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 4566666666654 55566666666666677777777777776654 44555666666666 5 66777777
Q ss_pred HHhcCCC-ChhhHHHHHHHHHh----cCCHHHHHHHHhhCCCCC-----hhhHHHHHHHHHh----CCChHHHHHHHHHH
Q 037713 163 FDSIKLK-NSVSWTAMLSAYAR----SGRKKDAMEIFEQAPVRN-----LFLWTALVSGLVQ----SRNEIDAFYSFIEM 228 (610)
Q Consensus 163 ~~~m~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~----~g~~~~A~~~~~~m 228 (610)
|++..++ +..++..|...|.. .+++++|...|++....+ +.++..|...|.. .+++++|+.+|++.
T Consensus 76 ~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 76 AEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 6665433 55566666666655 667777777777655442 4666677777776 66777777777777
Q ss_pred HHcCCCCCCHhHHHHHHHHHhcc-c-----cHHHHHHHHHHHHHhCC
Q 037713 229 RREGVDIVDPLVLSSIVGACANF-A-----VLELGKQIHGLVIALGY 269 (610)
Q Consensus 229 ~~~~~~~p~~~t~~~ll~~~~~~-~-----~~~~a~~~~~~~~~~~~ 269 (610)
.+.+ .++..+..+...+... | +.++|...++...+.|.
T Consensus 156 ~~~~---~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 156 SSLS---RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHTS---CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHcC---CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 6652 2333444454454432 2 67777777777766653
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.60 E-value=3.5e-06 Score=81.23 Aligned_cols=159 Identities=8% Similarity=-0.054 Sum_probs=113.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcC-CCCCHH----HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----HHHHHH
Q 037713 310 IIVGTAQHGQAEETLALYDEMVSAG-VKPNEV----TFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPS----LQHYTC 380 (610)
Q Consensus 310 li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~ 380 (610)
.+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|...++.+.+...-.++ ..+|+.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3566777888888888888877632 122321 2334666677778888888888888763222223 236888
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-----CC--C-CC-HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC------CcchH
Q 037713 381 LLDLLSRSGHLDEAENLIKAM-----PF--E-PD-EPTWAALLSACKHHRNTEMGTRVANHLLSLKPED------PSSYI 445 (610)
Q Consensus 381 li~~~~~~g~~~~A~~~~~~m-----~~--~-p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 445 (610)
+...|...|++++|...|+++ .. . |. ..++..+...|...|++++|...+++++++.+.. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888888889988888888776 11 1 11 3467788888999999999999999988654322 45788
Q ss_pred hHHHHhhhhcc-hhHHHHHHHHHh
Q 037713 446 LLSNVYASAAM-WQHVSKVRKLMS 468 (610)
Q Consensus 446 ~l~~~~~~~g~-~~~a~~~~~~m~ 468 (610)
.++.+|.+.|+ +++|.+.++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999999995 688988877654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.60 E-value=2.2e-07 Score=79.54 Aligned_cols=100 Identities=9% Similarity=0.059 Sum_probs=84.5
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhH
Q 037713 371 ITPS-LQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILL 447 (610)
Q Consensus 371 ~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 447 (610)
+.|+ ...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..|+++++++|+++.+|..+
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l 110 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT 110 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 3443 466777888888899999999998887 4445 577888888889999999999999999999999999999999
Q ss_pred HHHhhhhcchhHHHHHHHHHhhC
Q 037713 448 SNVYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 448 ~~~~~~~g~~~~a~~~~~~m~~~ 470 (610)
+.+|...|++++|.+.++...+.
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999888654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.59 E-value=1.2e-06 Score=79.76 Aligned_cols=126 Identities=9% Similarity=0.018 Sum_probs=93.1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 037713 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKH 419 (610)
Q Consensus 342 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~ 419 (610)
+..+...+...|++++|...|++. +.|+...|..+...|.+.|++++|.+.+++. ...| +...|..+...+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 334455566666777776666654 2445666777777777777777777777665 2223 46677777888888
Q ss_pred cCchhHHHHHHHHHhcCCCCCC----------------cchHhHHHHhhhhcchhHHHHHHHHHhhCCC
Q 037713 420 HRNTEMGTRVANHLLSLKPEDP----------------SSYILLSNVYASAAMWQHVSKVRKLMSVMEV 472 (610)
Q Consensus 420 ~g~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 472 (610)
.|++++|+..++++++..|.+. ..+..++.+|...|++++|.+.++...+...
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 8888888888888888887766 7899999999999999999999999876543
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=1.3e-07 Score=80.88 Aligned_cols=96 Identities=10% Similarity=0.064 Sum_probs=78.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHh
Q 037713 374 SLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVY 451 (610)
Q Consensus 374 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 451 (610)
+...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3456677778888888888888888877 3334 5777888888888889999999999999988998888888999999
Q ss_pred hhhcchhHHHHHHHHHhh
Q 037713 452 ASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 452 ~~~g~~~~a~~~~~~m~~ 469 (610)
...|++++|.+.++...+
T Consensus 100 ~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 999999999888887754
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.59 E-value=6.3e-07 Score=73.30 Aligned_cols=115 Identities=15% Similarity=0.166 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHH
Q 037713 339 EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PF-EPDEPTWAALLSA 416 (610)
Q Consensus 339 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~ 416 (610)
...+..+...+...|++++|.++++.+.+. .+.+...+..+...|.+.|++++|...++++ .. ..+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 345556666666677777777777666653 2334566667777777777777777777766 22 2356677778888
Q ss_pred HHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhc
Q 037713 417 CKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAA 455 (610)
Q Consensus 417 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 455 (610)
+...|++++|...++++++.+|.++..+..++.++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 888888888888888888888888777777777765543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.58 E-value=8.6e-07 Score=76.95 Aligned_cols=127 Identities=8% Similarity=-0.046 Sum_probs=91.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 037713 340 VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSAC 417 (610)
Q Consensus 340 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 417 (610)
..+..+...+...|++++|...|+...+. .+.+...+..+...|...|++++|.+.+++. ...| +...|..+...+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34555566666677777777777766653 2334666777777777777777777777766 2233 466777788888
Q ss_pred HhcCchhHHHHHHHHHhcCCCCCCcchHhHHH--HhhhhcchhHHHHHHHHHh
Q 037713 418 KHHRNTEMGTRVANHLLSLKPEDPSSYILLSN--VYASAAMWQHVSKVRKLMS 468 (610)
Q Consensus 418 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~--~~~~~g~~~~a~~~~~~m~ 468 (610)
...|++++|...++++++.+|.++..+..+.. .+...|++++|.+.+....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 88899999999999999888888777744444 4778899999988887654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.57 E-value=2.3e-07 Score=88.94 Aligned_cols=189 Identities=8% Similarity=-0.062 Sum_probs=112.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037713 273 LFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYAC 349 (610)
Q Consensus 273 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 349 (610)
...+..+...|.+.|++++|...|++..+ .+...|..+...|...|++++|+..+++..+.. +-+...+..+..++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34455556666666666666666665542 256666777777777777777777777766542 12456666677777
Q ss_pred hccCCHHHHHHHHHHhHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHH
Q 037713 350 SHVGLVGKGRKLFKSMIEDYGIT---PSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMG 426 (610)
Q Consensus 350 ~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a 426 (610)
...|++++|...|+...+...-. .....+..+ ...+...+.. .......++......+ ..+. .|+.++|
T Consensus 83 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~i~~~l-~~l~-~~~~~~A 154 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--RIAKKKRWNS----IEERRIHQESELHSYL-TRLI-AAERERE 154 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--HHHHHHHHHH----HHHTCCCCCCHHHHHH-HHHH-HHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--HHHHHHHHHH----HHHHHHhhhHHHHHHH-HHHH-HHHHHHH
Confidence 77777777777777665431100 011111111 1112211211 1222223333333333 3332 6888999
Q ss_pred HHHHHHHhcCCCCCCcchHhHHHHhhhh-cchhHHHHHHHHHhhC
Q 037713 427 TRVANHLLSLKPEDPSSYILLSNVYASA-AMWQHVSKVRKLMSVM 470 (610)
Q Consensus 427 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 470 (610)
.+.++++++++|++......+...+.+. +++++|.+++....+.
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999998776666777777766 7788999998887653
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.2e-06 Score=84.59 Aligned_cols=163 Identities=8% Similarity=-0.075 Sum_probs=112.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC--CCC--H
Q 037713 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE-----VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGI--TPS--L 375 (610)
Q Consensus 305 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~~~--~ 375 (610)
..+...+..+...|++++|++.+++..+.....+. ..+..+...+...|++++|...++...+...- .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34455666777788888888888777664322111 22334555667778888888888877652111 111 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCC------C
Q 037713 376 QHYTCLLDLLSRSGHLDEAENLIKAM----PFEPD-----EPTWAALLSACKHHRNTEMGTRVANHLLSLKPE------D 440 (610)
Q Consensus 376 ~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~ 440 (610)
.+|+.+...|...|++++|...+++. ...|+ ..++..+...|...|++++|+..+++++++.+. -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 57888888888888888888888765 11222 257788888899999999999999988765422 1
Q ss_pred CcchHhHHHHhhhhcchhHH-HHHHHHH
Q 037713 441 PSSYILLSNVYASAAMWQHV-SKVRKLM 467 (610)
Q Consensus 441 ~~~~~~l~~~~~~~g~~~~a-~~~~~~m 467 (610)
..+|..++.+|.+.|++++| ...++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 45678899999999999999 6656654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.55 E-value=5.5e-06 Score=85.90 Aligned_cols=372 Identities=8% Similarity=-0.066 Sum_probs=209.8
Q ss_pred cCC-ChHHHHHHHccCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCC-cHHHHHH
Q 037713 50 KCD-LVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGA-TRLGKQV 127 (610)
Q Consensus 50 ~~g-~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~-~~~a~~~ 127 (610)
+.| +++.|+.+|+... ..+-. |+++.+..+|++.+. ..|+...|..-++...+.++ .+....+
T Consensus 6 ~~~~~i~~aR~vyer~l-----------~~~P~-~~~e~~~~iferal~---~~ps~~LW~~Y~~f~~~~~~~~~~i~~~ 70 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHAR-----------RLYMS-KDYRSLESLFGRCLK---KSYNLDLWMLYIEYVRKVSQKKFKLYEV 70 (493)
T ss_dssp ------CCHHHHHHHHH-----------HHHHT-TCHHHHHHHHHHHST---TCCCHHHHHHHHHHHHHHC----CTHHH
T ss_pred HcCcchHHHHHHHHHHH-----------HHCCC-CCHHHHHHHHHHHhc---cCCCHHHHHHHHHHHHHhCchHHHHHHH
Confidence 345 3667777776543 22211 889999999998887 45788888887777666553 4556777
Q ss_pred HHHHHhc-CCC-CChhHHHHHHHHHHh----CCChHHHHHHHHhcCCCChhhHHHHHHHHHh---cCCHHHHHHHHhhCC
Q 037713 128 HACFVLS-PFC-DDDVVKSSLVDMYAK----CGLPNNARAVFDSIKLKNSVSWTAMLSAYAR---SGRKKDAMEIFEQAP 198 (610)
Q Consensus 128 ~~~~~~~-g~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~ 198 (610)
|+.++.. |.. .+..+|...+..+.. .|+++.+.++|++...-....+..+-..|.. ......+.++..+
T Consensus 71 fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~-- 148 (493)
T 2uy1_A 71 YEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGD-- 148 (493)
T ss_dssp HHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHH--
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHH--
Confidence 8877764 433 356677777766542 3567778888877753211112222222211 1112222222221
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhcc-------ccHHHHHHHHHHHHHhCCCC
Q 037713 199 VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANF-------AVLELGKQIHGLVIALGYES 271 (610)
Q Consensus 199 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~-------~~~~~a~~~~~~~~~~~~~~ 271 (610)
.. +.+..|..++..+...-.. .+...|...+.--... +..+.+..+++.++... +.
T Consensus 149 -------------~~--~~y~~ar~~y~~~~~~~~~-~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~ 211 (493)
T 2uy1_A 149 -------------TL--PIFQSSFQRYQQIQPLIRG-WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YY 211 (493)
T ss_dssp -------------HH--HHHHHHHHHHHHHHHHHHT-CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TT
T ss_pred -------------Hh--HHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CC
Confidence 11 2334444444444321100 1223343333332211 11345677888888754 55
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC-CC-hhHHHHHHHHHHhcCChHHHHHHHHHHHHcC---------CCC---
Q 037713 272 CLFISNAIVDMYAKCSDIIAAKDIFGRMRR-KD-VVSWTSIIVGTAQHGQAEETLALYDEMVSAG---------VKP--- 337 (610)
Q Consensus 272 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---------~~p--- 337 (610)
+..+|-..+..+.+.|+.+.|..+|++... |+ ...|. .|+...+.++. ++.+.+.- ..+
T Consensus 212 ~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~ 284 (493)
T 2uy1_A 212 AEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKE 284 (493)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccc
Confidence 677888888888899999999999987643 32 22232 23332222222 33332210 011
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHhC--CCCCCHHHHHHHH
Q 037713 338 NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSG-HLDEAENLIKAM--PFEPDEPTWAALL 414 (610)
Q Consensus 338 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m--~~~p~~~~~~~ll 414 (610)
....|...+....+.+..+.|..+|+.+ +.. ..+...|...+..-.+.| +.+.|..+|+.. ...-++..|...+
T Consensus 285 ~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~--~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yi 361 (493)
T 2uy1_A 285 LDLLRINHLNYVLKKRGLELFRKLFIEL-GNE--GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFF 361 (493)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS--CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC--CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 1244666666666678899999999988 421 234455544443333334 699999999877 2212345566677
Q ss_pred HHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhh
Q 037713 415 SACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 415 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 469 (610)
.-....|+.+.|..+|+++. .....+...++.-...|+.+.+.++++...+
T Consensus 362 d~e~~~~~~~~aR~l~er~~----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 362 LFLLRIGDEENARALFKRLE----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHTCHHHHHHHHHHSC----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77778899999999999873 2345566666666777999989887777653
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=6.5e-07 Score=73.92 Aligned_cols=117 Identities=10% Similarity=-0.023 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 037713 339 EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSA 416 (610)
Q Consensus 339 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~ 416 (610)
...+..+...+...|++++|...++...+. .+.+...+..+...|...|++++|.+.+++. ...| +...|..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 345556666666777777777777776653 2335566777777777777777777777766 2233 46677777788
Q ss_pred HHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcch
Q 037713 417 CKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMW 457 (610)
Q Consensus 417 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 457 (610)
+...|++++|...++++++..|+++..+..++.++...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 88888899999999988888888888888888888877765
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.53 E-value=7.2e-07 Score=74.07 Aligned_cols=116 Identities=10% Similarity=0.015 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 037713 339 EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSA 416 (610)
Q Consensus 339 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~ 416 (610)
...+..+...+...|++++|...|+...+. .+.+...+..+...|...|++++|.+.+++. ...| +...|..+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 344555555555566666666665555441 2224455566666666666666666666555 2222 45667777777
Q ss_pred HHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcc
Q 037713 417 CKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAM 456 (610)
Q Consensus 417 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 456 (610)
+...|++++|...++++++.+|.+...+..++.++...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888888888888888888888877777778777766553
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.52 E-value=4.5e-07 Score=88.20 Aligned_cols=197 Identities=10% Similarity=-0.045 Sum_probs=149.4
Q ss_pred ccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Q 037713 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDE 329 (610)
Q Consensus 250 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 329 (610)
..|++++|.++++++.+..-. . .+...+++++|...|.+. ...|...|++++|...|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHH
Confidence 357888999999888765321 1 111158899998887763 5678889999999999998
Q ss_pred HHHcC----CCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC--C--CHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 037713 330 MVSAG----VKP-NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGIT--P--SLQHYTCLLDLLSRSGHLDEAENLIKA 400 (610)
Q Consensus 330 m~~~g----~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~--~--~~~~~~~li~~~~~~g~~~~A~~~~~~ 400 (610)
..+.. -.+ -..+|..+...|...|++++|...|++..+-+.-. + ...++..+...|.+ |++++|.+.|++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 76531 111 14578889999999999999999999887642111 1 13678888999988 999999999987
Q ss_pred C-CCCC---C----HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCC------cchHhHHHHhhhhcchhHHHHHHHH
Q 037713 401 M-PFEP---D----EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDP------SSYILLSNVYASAAMWQHVSKVRKL 466 (610)
Q Consensus 401 m-~~~p---~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~ 466 (610)
. .+.| + ..++..+...+...|++++|+..+++++++.|.+. ..+..++.++...|++++|...++.
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7 1111 1 45788888899999999999999999998765443 2566777888888999999999998
Q ss_pred Hh
Q 037713 467 MS 468 (610)
Q Consensus 467 m~ 468 (610)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 76
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.50 E-value=1.6e-05 Score=76.58 Aligned_cols=159 Identities=8% Similarity=-0.059 Sum_probs=121.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC---Ch------hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HHHHH
Q 037713 278 AIVDMYAKCSDIIAAKDIFGRMRRK---DV------VSWTSIIVGTAQHGQAEETLALYDEMVSAGVK-PN----EVTFV 343 (610)
Q Consensus 278 ~li~~y~~~g~~~~A~~~~~~~~~~---~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~ 343 (610)
..+..+...|++++|...+++..+. +. ..+..+...+...|++++|+..|++..+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3467788999999999999987642 11 13334666777788999999999999884322 23 33688
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHH
Q 037713 344 GLIYACSHVGLVGKGRKLFKSMIEDY----GITPS-LQHYTCLLDLLSRSGHLDEAENLIKAM-------PFEPD-EPTW 410 (610)
Q Consensus 344 ~ll~a~~~~g~~~~a~~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~ 410 (610)
.+..+|...|++++|..+|+++.+.. +..+. ..+|..+...|.+.|++++|.+.+++. +..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 99999999999999999999987522 11222 247888999999999999999998876 22222 6778
Q ss_pred HHHHHHHHhcCc-hhHHHHHHHHHhcC
Q 037713 411 AALLSACKHHRN-TEMGTRVANHLLSL 436 (610)
Q Consensus 411 ~~ll~~~~~~g~-~~~a~~~~~~~~~~ 436 (610)
..+..++...|+ +++|...+++++++
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 888889999995 69999999988753
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.50 E-value=5.3e-07 Score=74.59 Aligned_cols=100 Identities=11% Similarity=0.104 Sum_probs=89.0
Q ss_pred CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhH
Q 037713 371 ITPSL-QHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILL 447 (610)
Q Consensus 371 ~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 447 (610)
+.|+. ..+......|.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 44543 66778889999999999999999987 4445 578899999999999999999999999999999999999999
Q ss_pred HHHhhhhcchhHHHHHHHHHhhC
Q 037713 448 SNVYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 448 ~~~~~~~g~~~~a~~~~~~m~~~ 470 (610)
+.+|...|++++|.+.++...+.
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999988653
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.49 E-value=4.4e-06 Score=80.51 Aligned_cols=161 Identities=7% Similarity=-0.050 Sum_probs=119.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC--C-Ch------hHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC--HH
Q 037713 275 ISNAIVDMYAKCSDIIAAKDIFGRMRR--K-DV------VSWTSIIVGTAQHGQAEETLALYDEMVSAGV---KPN--EV 340 (610)
Q Consensus 275 ~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~--~~ 340 (610)
.+...+..|...|++++|.+.+.+..+ + +. ..+..+...+...|++++|+..|++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 445567788899999999988876542 1 11 2344456667788999999999999875321 122 45
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-------CH
Q 037713 341 TFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPS-----LQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-------DE 407 (610)
Q Consensus 341 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-------~~ 407 (610)
+++.+...|...|++++|..+|+++.+.....|+ ..+|..+...|.+.|++++|.+.+++. .+.+ -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888999999999999999999988732111222 258888999999999999999998876 1111 16
Q ss_pred HHHHHHHHHHHhcCchhHH-HHHHHHHhc
Q 037713 408 PTWAALLSACKHHRNTEMG-TRVANHLLS 435 (610)
Q Consensus 408 ~~~~~ll~~~~~~g~~~~a-~~~~~~~~~ 435 (610)
.+|..+...+...|++++| ...+++++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788888889999999999 777887764
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.48 E-value=1.4e-06 Score=73.79 Aligned_cols=95 Identities=11% Similarity=0.010 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhh
Q 037713 375 LQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYA 452 (610)
Q Consensus 375 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 452 (610)
...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 355566677788888888888888876 3334 56777778888888888888888888888888888888888888888
Q ss_pred hhcchhHHHHHHHHHhh
Q 037713 453 SAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 453 ~~g~~~~a~~~~~~m~~ 469 (610)
..|++++|.+.++...+
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 88999888888887754
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.44 E-value=1.9e-06 Score=84.78 Aligned_cols=143 Identities=13% Similarity=0.016 Sum_probs=101.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHH
Q 037713 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382 (610)
Q Consensus 303 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 382 (610)
+...|..+...|.+.|++++|+..|++..+....... + ..+.+.++- . .....|..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--~-----------~~~~~~~~~-~--------~~~~~~~nla 203 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS--F-----------SNEEAQKAQ-A--------LRLASHLNLA 203 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC--C-----------CSHHHHHHH-H--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhcccc--C-----------ChHHHHHHH-H--------HHHHHHHHHH
Confidence 3455666666666666666666666666553211100 0 001111100 0 0146778888
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHH
Q 037713 383 DLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHV 460 (610)
Q Consensus 383 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 460 (610)
.+|.+.|++++|...+++. .+.| +...|..+..++...|++++|+..|+++++++|+++.++..++.++...|++++|
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999888887 3344 5778888999999999999999999999999999999999999999999999998
Q ss_pred -HHHHHHH
Q 037713 461 -SKVRKLM 467 (610)
Q Consensus 461 -~~~~~~m 467 (610)
.+.++.|
T Consensus 284 ~~~~~~~~ 291 (336)
T 1p5q_A 284 EKKLYANM 291 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 3455555
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=0.00013 Score=70.77 Aligned_cols=225 Identities=10% Similarity=0.010 Sum_probs=144.6
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccc-cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-C
Q 037713 210 SGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFA-VLELGKQIHGLVIALGYESCLFISNAIVDMYAKC-S 287 (610)
Q Consensus 210 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~-g 287 (610)
......+..++|++++.++...+. -+...++.--......+ .++++..+.+.+.+.. +.+..+|+.-...+.+. +
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~nP--~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~ 138 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRMNP--AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISP 138 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHhCc--hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcC
Confidence 334445556788888888888763 45556666666666666 4788888888877654 44566777666666665 6
Q ss_pred -CHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC-
Q 037713 288 -DIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAE--------ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGL- 354 (610)
Q Consensus 288 -~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--------~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~- 354 (610)
++++++++++.+.+ +|..+|+--.-.+.+.|.++ ++++.++++.+..+. |...|+.....+.+.+.
T Consensus 139 ~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 139 QDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp SCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTC
T ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccc
Confidence 77888888888875 36677777666666656565 888888888887544 77777777777777765
Q ss_pred ------HHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHhC-CC----
Q 037713 355 ------VGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHL--------------------DEAENLIKAM-PF---- 403 (610)
Q Consensus 355 ------~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~m-~~---- 403 (610)
++++++++.+++.. .+-|...|+-+-..+.+.|+. .+..++..++ +.
T Consensus 218 ~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPE 295 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCS
T ss_pred ccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccc
Confidence 67788888777763 345667777777777666653 2333333333 11
Q ss_pred ---CCCHHHHHHHHHHHHhcCchhHHHHHHHHHh-cCCCCC
Q 037713 404 ---EPDEPTWAALLSACKHHRNTEMGTRVANHLL-SLKPED 440 (610)
Q Consensus 404 ---~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~p~~ 440 (610)
.+....+..|+..|...|+.++|.++++.+. +.+|-.
T Consensus 296 ~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir 336 (349)
T 3q7a_A 296 DTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMR 336 (349)
T ss_dssp SCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGG
T ss_pred ccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHH
Confidence 1345555566666666666666666666654 455543
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.38 E-value=7.8e-07 Score=78.50 Aligned_cols=116 Identities=9% Similarity=0.072 Sum_probs=56.4
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCch--hHH
Q 037713 352 VGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSA-CKHHRNT--EMG 426 (610)
Q Consensus 352 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~-~~~~g~~--~~a 426 (610)
.|++++|...++...+. .+.+...|..+...|...|++++|...|++. ...| +...|..+... +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 34444444444444432 1223444555555555555555555555444 1112 33444444444 4455555 555
Q ss_pred HHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhh
Q 037713 427 TRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 427 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 469 (610)
...++++++.+|+++..+..++.+|...|++++|...++...+
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 5555555555555555555555555555555555555555443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.37 E-value=3e-06 Score=76.32 Aligned_cols=152 Identities=11% Similarity=0.002 Sum_probs=83.8
Q ss_pred hcCCHHHHHH---HHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCC-CHHHHHHHHHHHhccCCHH
Q 037713 285 KCSDIIAAKD---IFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVS----AGVKP-NEVTFVGLIYACSHVGLVG 356 (610)
Q Consensus 285 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p-~~~t~~~ll~a~~~~g~~~ 356 (610)
..|++++|.+ .+..-+.....++..+...+...|++++|+..+++..+ .+..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566666666 44443333455666677777777777777777776654 11111 2345556666677777777
Q ss_pred HHHHHHHHhHHhc---CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCch
Q 037713 357 KGRKLFKSMIEDY---GITP--SLQHYTCLLDLLSRSGHLDEAENLIKAM----PFEPD----EPTWAALLSACKHHRNT 423 (610)
Q Consensus 357 ~a~~~~~~~~~~~---~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~ 423 (610)
+|...+++..+.. +-.| ....+..+...+...|++++|...+++. ...++ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 7777776655431 1111 1234556666666677777766666554 11111 22244555556666666
Q ss_pred hHHHHHHHHHhcC
Q 037713 424 EMGTRVANHLLSL 436 (610)
Q Consensus 424 ~~a~~~~~~~~~~ 436 (610)
++|...+++++++
T Consensus 164 ~~A~~~~~~al~~ 176 (203)
T 3gw4_A 164 LEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=5.3e-06 Score=66.88 Aligned_cols=109 Identities=13% Similarity=0.044 Sum_probs=71.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 037713 340 VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSAC 417 (610)
Q Consensus 340 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 417 (610)
..+..+...+...|++++|...++...+. .+.+...+..+...|.+.|++++|...+++. ...| +...+..+...+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 44555556666666666666666666553 2334566666666777777777777776665 2233 456677777777
Q ss_pred HhcCchhHHHHHHHHHhcCCCCCCcchHhHHHH
Q 037713 418 KHHRNTEMGTRVANHLLSLKPEDPSSYILLSNV 450 (610)
Q Consensus 418 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 450 (610)
...|++++|...++++++.+|+++..+..+..+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 788888888888888888888776655555443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.36 E-value=3.8e-06 Score=75.58 Aligned_cols=82 Identities=10% Similarity=-0.107 Sum_probs=38.6
Q ss_pred hcCCHHHHHH---HHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCCCCHhHHHHHHHHHhccccHH
Q 037713 183 RSGRKKDAME---IFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRRE----GVDIVDPLVLSSIVGACANFAVLE 255 (610)
Q Consensus 183 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~p~~~t~~~ll~~~~~~~~~~ 255 (610)
..|++++|.+ .+..-+......++.+...+...|++++|+..|++.... +..+.....+..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455555555 444333334455666666666666666666666665541 111012233334444444444444
Q ss_pred HHHHHHHHH
Q 037713 256 LGKQIHGLV 264 (610)
Q Consensus 256 ~a~~~~~~~ 264 (610)
.|...+...
T Consensus 84 ~A~~~~~~a 92 (203)
T 3gw4_A 84 AARRCFLEE 92 (203)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.36 E-value=3.1e-06 Score=74.55 Aligned_cols=127 Identities=10% Similarity=0.097 Sum_probs=97.6
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHH-HHhcCCH--
Q 037713 315 AQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDL-LSRSGHL-- 391 (610)
Q Consensus 315 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~-- 391 (610)
...|++++|+..+++..+.. +.+...+..+...+...|++++|...|+...+. .+.+...+..+..+ |...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcch
Confidence 34678888888888877753 236678888888888999999999999888774 23456777888888 7788998
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcch
Q 037713 392 DEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSY 444 (610)
Q Consensus 392 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 444 (610)
++|...+++. ...| +...|..+...+...|++++|...++++++.+|+++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 9999998887 3344 467788888889999999999999999999999875433
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.33 E-value=2.4e-06 Score=70.47 Aligned_cols=94 Identities=10% Similarity=0.009 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhh
Q 037713 376 QHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYAS 453 (610)
Q Consensus 376 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 453 (610)
..|..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..++.+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 45566666777777777777777766 3333 466777777778888888888888888888888888888888888888
Q ss_pred hcchhHHHHHHHHHhh
Q 037713 454 AAMWQHVSKVRKLMSV 469 (610)
Q Consensus 454 ~g~~~~a~~~~~~m~~ 469 (610)
.|++++|.+.++...+
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 8888888888777654
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=1.2e-06 Score=74.84 Aligned_cols=103 Identities=9% Similarity=-0.054 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 037713 339 EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSA 416 (610)
Q Consensus 339 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~ 416 (610)
...+..+...+...|++++|...|+...+. -+.+...|..+..+|.+.|++++|.+.|++. ...| +...|..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 345566667777888888888888877763 3346677777888888888888888888876 3334 45677778888
Q ss_pred HHhcCchhHHHHHHHHHhcCCCCCCcc
Q 037713 417 CKHHRNTEMGTRVANHLLSLKPEDPSS 443 (610)
Q Consensus 417 ~~~~g~~~~a~~~~~~~~~~~p~~~~~ 443 (610)
+...|++++|+..+++++++.|+++..
T Consensus 99 ~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 889999999999999999988877654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.32 E-value=7.5e-06 Score=78.30 Aligned_cols=191 Identities=12% Similarity=-0.012 Sum_probs=114.6
Q ss_pred CHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHH
Q 037713 237 DPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVG 313 (610)
Q Consensus 237 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 313 (610)
+...+..+...+...|+++.|...+..+++.. +.+...+..+..+|.+.|++++|...|++..+ .+...|..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 33444444444555555555555555555442 23566677777888888888888888887764 356788888889
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 037713 314 TAQHGQAEETLALYDEMVSAGVKPNE-VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLD 392 (610)
Q Consensus 314 ~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 392 (610)
|...|++++|+..|++..+.. |+. ..+...+....+ ..++... ..... .....+......+...+ .|+.+
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~~~-~~~~~-~~~~~~~~i~~~l~~l~--~~~~~ 152 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKKRW-NSIEE-RRIHQESELHSYLTRLI--AAERE 152 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHHHH-HHHHH-TCCCCCCHHHHHHHHHH--HHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHHHH-HHHHH-HHHhhhHHHHHHHHHHH--HHHHH
Confidence 999999999999998877642 211 011111111111 1112222 22222 24555665555554433 68999
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHH-HHhc-CchhHHHHHHHHHhcCC
Q 037713 393 EAENLIKAM-PFEPDEPTWAALLSA-CKHH-RNTEMGTRVANHLLSLK 437 (610)
Q Consensus 393 ~A~~~~~~m-~~~p~~~~~~~ll~~-~~~~-g~~~~a~~~~~~~~~~~ 437 (610)
+|.+.+++. ...|+......-+.. +... +.+++|.++|.++.+..
T Consensus 153 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 153 RELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp HHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 999988877 667765444333333 4444 67889999999887643
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.31 E-value=1.3e-05 Score=69.31 Aligned_cols=127 Identities=11% Similarity=0.024 Sum_probs=83.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 037713 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDL 384 (610)
Q Consensus 305 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 384 (610)
..|..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...++...+. .+.+...|..+...
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 455666666777777777777777776642 225666777777777777777777777777663 23456677777777
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHH--HHHHHHHhcCchhHHHHHHHHHh
Q 037713 385 LSRSGHLDEAENLIKAM-PFEP-DEPTWA--ALLSACKHHRNTEMGTRVANHLL 434 (610)
Q Consensus 385 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~--~ll~~~~~~g~~~~a~~~~~~~~ 434 (610)
|.+.|++++|.+.+++. ...| +...+. .+...+...|++++|...+++..
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 77788888888777776 2233 333443 33333666778888887777654
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.30 E-value=2.6e-06 Score=68.09 Aligned_cols=94 Identities=10% Similarity=0.083 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCC--CCcchHhHHHHh
Q 037713 376 QHYTCLLDLLSRSGHLDEAENLIKAM-PFE-PDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE--DPSSYILLSNVY 451 (610)
Q Consensus 376 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~ 451 (610)
..+..+...+.+.|++++|...+++. ... .+...|..+...+...|++++|...++++++..|. ++..+..++.+|
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 34445555555666666666666554 222 23455566666666666666666666666666666 666666666666
Q ss_pred hhh-cchhHHHHHHHHHhh
Q 037713 452 ASA-AMWQHVSKVRKLMSV 469 (610)
Q Consensus 452 ~~~-g~~~~a~~~~~~m~~ 469 (610)
... |++++|.+.++...+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGG
T ss_pred HHHhCCHHHHHHHHHHHhh
Confidence 666 666666666666644
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.30 E-value=5.2e-06 Score=74.69 Aligned_cols=166 Identities=9% Similarity=-0.057 Sum_probs=100.7
Q ss_pred HHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 037713 281 DMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGK 357 (610)
Q Consensus 281 ~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 357 (610)
......|++++|.+.|+.-.. .....|..+...+...|++++|+..|++..+.. |+...+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~------------ 77 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ------------ 77 (198)
T ss_dssp ----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH------------
T ss_pred hhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh------------
Confidence 334445566666555554332 134556667777777777777877777776642 211000000
Q ss_pred HHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhc
Q 037713 358 GRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLS 435 (610)
Q Consensus 358 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 435 (610)
....-.. ......|..+..+|.+.|++++|...+++. ...| +...+..+..++...|++++|...++++++
T Consensus 78 ---~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 78 ---ILLDKKK----NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp ---HHHHHHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ---hHHHHHH----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 0000000 001356777788888888888888888776 3333 577788888889999999999999999999
Q ss_pred CCCCCCcchHhHHHHhhhhcchhHHH-HHHHHH
Q 037713 436 LKPEDPSSYILLSNVYASAAMWQHVS-KVRKLM 467 (610)
Q Consensus 436 ~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m 467 (610)
++|+++..+..+..++...|+.+++. ..++.|
T Consensus 151 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 151 LNPNNLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HSTTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred HCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888887776 444444
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.30 E-value=3.5e-06 Score=87.14 Aligned_cols=118 Identities=8% Similarity=-0.026 Sum_probs=93.8
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchh
Q 037713 347 YACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTE 424 (610)
Q Consensus 347 ~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~ 424 (610)
..+.+.|++++|.+.+++..+. .+.+...|..+..+|.+.|++++|.+.+++. ...| +...|..+..++...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 3456778888888888888774 2335778888888889999999999888887 4445 4778888888999999999
Q ss_pred HHHHHHHHHhcCCCCCCcchHhHHHH--hhhhcchhHHHHHHHH
Q 037713 425 MGTRVANHLLSLKPEDPSSYILLSNV--YASAAMWQHVSKVRKL 466 (610)
Q Consensus 425 ~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~ 466 (610)
+|++.++++++++|+++..+..++.+ +.+.|++++|.+.++.
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999899888888 8889999999998774
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.30 E-value=4.1e-05 Score=71.81 Aligned_cols=126 Identities=9% Similarity=-0.082 Sum_probs=76.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCC-----hhhHHHHHHHHHhC
Q 037713 143 KSSLVDMYAKCGLPNNARAVFDSIKL--KNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN-----LFLWTALVSGLVQS 215 (610)
Q Consensus 143 ~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~~ 215 (610)
.-.+...+...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+...... ...+..+..++.+.
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHC
Confidence 34456667777777777777777763 222244555556777777777777776554321 23556666777777
Q ss_pred CChHHHHHHHHHHHHcCCCCC-CHhHHHHHHHHHhccccHHHHHHHHHHHHHhC
Q 037713 216 RNEIDAFYSFIEMRREGVDIV-DPLVLSSIVGACANFAVLELGKQIHGLVIALG 268 (610)
Q Consensus 216 g~~~~A~~~~~~m~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 268 (610)
|++++|++.|++.......|. ..........++.+.|+.++|..+++.+....
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 777777777777664332111 22344455555666666666666666666553
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.30 E-value=3.1e-06 Score=72.21 Aligned_cols=95 Identities=11% Similarity=-0.036 Sum_probs=49.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 037713 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLD 383 (610)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 383 (610)
...|..+...+.+.|++++|+..|++...... -+...|..+..++...|++++|...|++..+. -+.+...|..+..
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--~P~~~~~~~~lg~ 112 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--GKNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CCCCcHHHHHHHH
Confidence 34455555555566666666666666555421 13445555555555555555555555555542 1223344455555
Q ss_pred HHHhcCCHHHHHHHHHhC
Q 037713 384 LLSRSGHLDEAENLIKAM 401 (610)
Q Consensus 384 ~~~~~g~~~~A~~~~~~m 401 (610)
+|.+.|++++|...|++.
T Consensus 113 ~~~~lg~~~eA~~~~~~a 130 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELV 130 (151)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 555555555555555444
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=0.00015 Score=69.96 Aligned_cols=229 Identities=10% Similarity=0.041 Sum_probs=141.8
Q ss_pred HhCCChH-HHHHHHHHHHHcCCCCCCHhHHHHHHHHHhcccc----------HHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 037713 213 VQSRNEI-DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAV----------LELGKQIHGLVIALGYESCLFISNAIVD 281 (610)
Q Consensus 213 ~~~g~~~-~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~ 281 (610)
.+.|.+. +|++++..+...++ -+...|+.--......+. ++.+..+++.+.... +.+..+|+.-..
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP--~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~w 116 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANP--DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCW 116 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCT--TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCc--hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4455544 78888888887662 344444433333332222 566667777776654 446667776666
Q ss_pred HHHhcC--CHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc---
Q 037713 282 MYAKCS--DIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQ-AEETLALYDEMVSAGVKPNEVTFVGLIYACSHV--- 352 (610)
Q Consensus 282 ~y~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~--- 352 (610)
.+.+.| .+++++.+++.+.+ +|..+|+--.-.+...|. ++++++.++++.+..+. |...|+.....+.+.
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCC
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhc
Confidence 666766 47888888887763 467778777777777777 47888888888876544 566666554444433
Q ss_pred -----------CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHhC-CCCCCHHH
Q 037713 353 -----------GLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRS-----------GHLDEAENLIKAM-PFEPDEPT 409 (610)
Q Consensus 353 -----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m-~~~p~~~~ 409 (610)
+.++++++.+...+.. .+-|...|+-+-..+.+. +.++++++.++++ ...||. .
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~ 272 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-K 272 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-H
T ss_pred cccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-c
Confidence 3467777777777763 344566666555555554 4567777777776 455653 3
Q ss_pred HHHHHHH-----HHhcCchhHHHHHHHHHhcCCCCCCcchHhHH
Q 037713 410 WAALLSA-----CKHHRNTEMGTRVANHLLSLKPEDPSSYILLS 448 (610)
Q Consensus 410 ~~~ll~~-----~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 448 (610)
|..+-.+ ....+..++....+.++.+++|....-|.-|.
T Consensus 273 w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~ 316 (331)
T 3dss_A 273 WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 316 (331)
T ss_dssp HHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred hHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 4322222 12346666777778888888876544444443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.28 E-value=3.2e-06 Score=69.26 Aligned_cols=93 Identities=16% Similarity=0.087 Sum_probs=77.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhh
Q 037713 377 HYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASA 454 (610)
Q Consensus 377 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 454 (610)
.+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3455667788889999999888887 4445 5777888888889999999999999999999999988999999999999
Q ss_pred cchhHHHHHHHHHhh
Q 037713 455 AMWQHVSKVRKLMSV 469 (610)
Q Consensus 455 g~~~~a~~~~~~m~~ 469 (610)
|++++|...++...+
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999998888764
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.27 E-value=5.3e-06 Score=70.06 Aligned_cols=106 Identities=9% Similarity=-0.025 Sum_probs=74.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 037713 340 VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSAC 417 (610)
Q Consensus 340 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 417 (610)
..+..+...+...|++++|...|+...+. -+.+...|..+..+|.+.|++++|...|++. ...| +...|..+..++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 34445556677777777777777777663 2345667777777777888888888877776 3333 455677777788
Q ss_pred HhcCchhHHHHHHHHHhcCCCCCCcchHhH
Q 037713 418 KHHRNTEMGTRVANHLLSLKPEDPSSYILL 447 (610)
Q Consensus 418 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 447 (610)
...|++++|...+++++++.|+++......
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 888888888888888888888776554443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.25 E-value=6e-06 Score=68.97 Aligned_cols=96 Identities=10% Similarity=-0.015 Sum_probs=67.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHh
Q 037713 374 SLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVY 451 (610)
Q Consensus 374 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 451 (610)
+...|..+...+.+.|++++|...|++. ...| +...|..+...+...|++++|...++++++++|+++..+..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 4556666666677777777777776665 2223 3566666777777777777777777777777777777777777777
Q ss_pred hhhcchhHHHHHHHHHhh
Q 037713 452 ASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 452 ~~~g~~~~a~~~~~~m~~ 469 (610)
...|++++|...++...+
T Consensus 88 ~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 777777777777776654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.24 E-value=6.9e-06 Score=77.04 Aligned_cols=181 Identities=8% Similarity=-0.033 Sum_probs=121.0
Q ss_pred hcCCHHHHHHHHHhcCC--C-ChhHHHHH-------HHHHHhcCChHHHHHHHHHHHHcCCCCC----------------
Q 037713 285 KCSDIIAAKDIFGRMRR--K-DVVSWTSI-------IVGTAQHGQAEETLALYDEMVSAGVKPN---------------- 338 (610)
Q Consensus 285 ~~g~~~~A~~~~~~~~~--~-~~~~~~~l-------i~~~~~~g~~~~A~~l~~~m~~~g~~p~---------------- 338 (610)
..++...|.+.|.+... | ....|+.+ ...+...++..+++..++.-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 46777777777777763 2 45677776 4555555555555555554333 2221
Q ss_pred ------HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH----H
Q 037713 339 ------EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDE----P 408 (610)
Q Consensus 339 ------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~----~ 408 (610)
......+...+...|++++|.+.|+.+.. ..|+......+...+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 11233455667778888888888887754 2344335566666788888888888888876333332 3
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHhcCC--CC-CCcchHhHHHHhhhhcchhHHHHHHHHHhhC
Q 037713 409 TWAALLSACKHHRNTEMGTRVANHLLSLK--PE-DPSSYILLSNVYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 409 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 470 (610)
.+..+..++...|++++|+..|+++.... |. .+.....++.++.+.|+.++|..+++.+...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 56677777888888888888888887433 43 3346677888888888888888888888653
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.24 E-value=1.3e-05 Score=82.80 Aligned_cols=113 Identities=11% Similarity=0.046 Sum_probs=47.4
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037713 316 QHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAE 395 (610)
Q Consensus 316 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 395 (610)
+.|++++|++.|++..+.. +-+..++..+..++.+.|++++|.+.+++..+. -+.+...|..+..+|.+.|++++|.
T Consensus 18 ~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 18 KAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 3444555555555444431 112444444555555555555555555554441 1223344455555555555555555
Q ss_pred HHHHhC-CCCCC-HHHHHHHHHH--HHhcCchhHHHHHHH
Q 037713 396 NLIKAM-PFEPD-EPTWAALLSA--CKHHRNTEMGTRVAN 431 (610)
Q Consensus 396 ~~~~~m-~~~p~-~~~~~~ll~~--~~~~g~~~~a~~~~~ 431 (610)
+.|++. ...|+ ...+..+..+ +...|++++|++.++
T Consensus 95 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 95 RDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 555444 11121 1222222222 444555555555555
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.24 E-value=5.5e-06 Score=68.56 Aligned_cols=99 Identities=8% Similarity=0.028 Sum_probs=88.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHH
Q 037713 372 TPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSN 449 (610)
Q Consensus 372 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 449 (610)
+.+...+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++|+..++++++.+|.++..+..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 345678889999999999999999999987 5555 67888889999999999999999999999999999999999999
Q ss_pred HhhhhcchhHHHHHHHHHhhC
Q 037713 450 VYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 450 ~~~~~g~~~~a~~~~~~m~~~ 470 (610)
+|...|++++|.+.++...+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999987653
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.22 E-value=3.6e-05 Score=62.45 Aligned_cols=93 Identities=15% Similarity=0.216 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHH
Q 037713 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLL 385 (610)
Q Consensus 306 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 385 (610)
.|..+...+...|++++|.++|+++.... +.+..++..+...+...|++++|..+++.+.+. .+.+...+..+...|
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHH
Confidence 34444444444444444444444444431 123344444444444555555555555444442 122334444455555
Q ss_pred HhcCCHHHHHHHHHhC
Q 037713 386 SRSGHLDEAENLIKAM 401 (610)
Q Consensus 386 ~~~g~~~~A~~~~~~m 401 (610)
.+.|++++|...++++
T Consensus 88 ~~~~~~~~A~~~~~~~ 103 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKA 103 (125)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHH
Confidence 5555555555555444
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.22 E-value=4.8e-06 Score=72.28 Aligned_cols=104 Identities=12% Similarity=0.010 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 037713 339 EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSA 416 (610)
Q Consensus 339 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~ 416 (610)
...+..+...+...|++++|...|+...+. .+.+...|..+..+|.+.|++++|...|++. .+.| +...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 445556666666666666666666666553 2234556666666666666666666666655 2233 35556666666
Q ss_pred HHhcCchhHHHHHHHHHhcCCCCCCcch
Q 037713 417 CKHHRNTEMGTRVANHLLSLKPEDPSSY 444 (610)
Q Consensus 417 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 444 (610)
+...|++++|...++++++++|+++..+
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~ 116 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDA 116 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHH
Confidence 6666666666666666666666655543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.22 E-value=9.7e-06 Score=70.34 Aligned_cols=96 Identities=11% Similarity=-0.032 Sum_probs=80.8
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHH
Q 037713 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382 (610)
Q Consensus 303 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 382 (610)
+...|..+...+.+.|++++|+..|++..+... -+...|..+..++...|++++|...|+...+. .+.+...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 456788888899999999999999999888632 26778888889999999999999999998874 244578888999
Q ss_pred HHHHhcCCHHHHHHHHHhC
Q 037713 383 DLLSRSGHLDEAENLIKAM 401 (610)
Q Consensus 383 ~~~~~~g~~~~A~~~~~~m 401 (610)
.+|.+.|++++|.+.|++.
T Consensus 87 ~~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHH
Confidence 9999999999999998887
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.21 E-value=8.4e-06 Score=67.06 Aligned_cols=107 Identities=9% Similarity=-0.076 Sum_probs=66.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 037713 341 TFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACK 418 (610)
Q Consensus 341 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 418 (610)
.+..+...+.+.|++++|...|+...+. .+.+...|..+..+|.+.|++++|...+++. ...| +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 4445555566666666666666666553 2334566666666666677777776666665 3333 3556666777777
Q ss_pred hcCchhHHHHHHHHHhcCC------CCCCcchHhHHH
Q 037713 419 HHRNTEMGTRVANHLLSLK------PEDPSSYILLSN 449 (610)
Q Consensus 419 ~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~ 449 (610)
..|++++|...++++++++ |.++.....+..
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~ 120 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 120 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHH
Confidence 7777777777777777777 655544444433
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=0.00011 Score=71.26 Aligned_cols=212 Identities=12% Similarity=0.097 Sum_probs=155.1
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-CHHHHHHHHHhcCC---CChhHHHHHHHHHHhc-C-ChHHHHHHH
Q 037713 254 LELGKQIHGLVIALGYESCLFISNAIVDMYAKCS-DIIAAKDIFGRMRR---KDVVSWTSIIVGTAQH-G-QAEETLALY 327 (610)
Q Consensus 254 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-g-~~~~A~~l~ 327 (610)
.++|..+.+.++..+ +.+..+|+.--..+...| .+++++++++.+.. ++..+|+.-...+.+. + +++++++++
T Consensus 70 se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~ 148 (349)
T 3q7a_A 70 SERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYI 148 (349)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred CHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 456778888888775 446677888777777888 59999999999874 4678898888777776 7 899999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCCHH--------HHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCC-------HH
Q 037713 328 DEMVSAGVKPNEVTFVGLIYACSHVGLVG--------KGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGH-------LD 392 (610)
Q Consensus 328 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~ 392 (610)
+++.+...+ |...|+.-.-.+.+.|..+ ++++.++++++. -+-|...|+....++.+.+. ++
T Consensus 149 ~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~ 225 (349)
T 3q7a_A 149 HGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRSLQ 225 (349)
T ss_dssp HHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHHH
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHHHH
Confidence 999986544 6777776555555555555 899999999884 34577888888888888886 78
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCch--------------------hHHHHHHHHHhcCC------CCCCcch
Q 037713 393 EAENLIKAM-PFEP-DEPTWAALLSACKHHRNT--------------------EMGTRVANHLLSLK------PEDPSSY 444 (610)
Q Consensus 393 ~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~--------------------~~a~~~~~~~~~~~------p~~~~~~ 444 (610)
++++.++++ ...| |...|+-+-..+.+.|+. .....+...+.... +.++.+.
T Consensus 226 eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al 305 (349)
T 3q7a_A 226 DELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLAL 305 (349)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHH
Confidence 888888777 3344 677888777777766654 22333333333222 3455667
Q ss_pred HhHHHHhhhhcchhHHHHHHHHHhh
Q 037713 445 ILLSNVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 445 ~~l~~~~~~~g~~~~a~~~~~~m~~ 469 (610)
..|+++|...|+.++|.++++.+.+
T Consensus 306 ~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 306 EYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 7899999999999999999999863
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.20 E-value=1.8e-05 Score=66.87 Aligned_cols=110 Identities=11% Similarity=-0.017 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 037713 339 EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPS----LQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAA 412 (610)
Q Consensus 339 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ 412 (610)
...+..+...+...|++++|...|+...+ ..|+ ...|..+...|...|++++|...+++. ...| +...|..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 34444445555555555555555555443 2233 345555666666666666666666554 2223 4556666
Q ss_pred HHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHh
Q 037713 413 LLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVY 451 (610)
Q Consensus 413 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 451 (610)
+..++...|++++|...++++++.+|+++..+..+..+.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 667777777777777777777777777665555554443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.20 E-value=1e-05 Score=68.37 Aligned_cols=98 Identities=7% Similarity=-0.032 Sum_probs=88.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhH
Q 037713 373 PSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD----EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILL 447 (610)
Q Consensus 373 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 447 (610)
.+...+..+...+.+.|++++|.+.|++. ...|+ ...|..+...+...|++++|+..++++++.+|+++..+..+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 35678888999999999999999999988 66777 67788888889999999999999999999999999999999
Q ss_pred HHHhhhhcchhHHHHHHHHHhhC
Q 037713 448 SNVYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 448 ~~~~~~~g~~~~a~~~~~~m~~~ 470 (610)
+.+|...|++++|.+.++...+.
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Confidence 99999999999999999988653
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.20 E-value=8.9e-06 Score=65.49 Aligned_cols=97 Identities=9% Similarity=0.074 Sum_probs=86.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHh
Q 037713 374 SLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVY 451 (610)
Q Consensus 374 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 451 (610)
....+..+...+...|++++|...+++. ...| +...|..+...+...|++++|...++++++.+|+++..+..++.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3567788889999999999999999987 3334 6778888889999999999999999999999999999999999999
Q ss_pred hhhcchhHHHHHHHHHhhC
Q 037713 452 ASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 452 ~~~g~~~~a~~~~~~m~~~ 470 (610)
...|++++|.+.++...+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 9999999999999988653
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.1e-05 Score=64.15 Aligned_cols=100 Identities=11% Similarity=-0.021 Sum_probs=67.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHH
Q 037713 340 VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP---DEPTWAALLS 415 (610)
Q Consensus 340 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~ 415 (610)
..+..+...+...|++++|...++...+. .+.+...+..+...|.+.|++++|.+.+++. ...| +...|..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 34445555666666777777776666653 2334566667777777777777777777666 3333 4667777777
Q ss_pred HHHhc-CchhHHHHHHHHHhcCCCCCC
Q 037713 416 ACKHH-RNTEMGTRVANHLLSLKPEDP 441 (610)
Q Consensus 416 ~~~~~-g~~~~a~~~~~~~~~~~p~~~ 441 (610)
.+... |++++|.+.++++++..|+++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 78888 888888888888888777653
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=3.9e-05 Score=62.87 Aligned_cols=115 Identities=17% Similarity=0.068 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 037713 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDL 384 (610)
Q Consensus 305 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 384 (610)
..|..+...+...|++++|+..|++..... +.+...+..+..++...|++++|...++...+. .+.+...+..+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHHHH
Confidence 344444555555555555555555554432 123444555555555555555555555555442 22234455555555
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCc
Q 037713 385 LSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRN 422 (610)
Q Consensus 385 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~ 422 (610)
|.+.|++++|...|++. ...| +...+..+...+...|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 55555555555555554 2222 33444444444444443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.16 E-value=1.5e-05 Score=66.44 Aligned_cols=100 Identities=8% Similarity=-0.122 Sum_probs=70.5
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 037713 338 NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLS 415 (610)
Q Consensus 338 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~ 415 (610)
+...+..+...+...|++++|...|+...+. .+.+...|..+...|...|++++|...+++. ...| +...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 4566666667777777777777777776653 2334566777777777777777777777766 3333 4667777777
Q ss_pred HHHhcCchhHHHHHHHHHhcCCCC
Q 037713 416 ACKHHRNTEMGTRVANHLLSLKPE 439 (610)
Q Consensus 416 ~~~~~g~~~~a~~~~~~~~~~~p~ 439 (610)
.+...|++++|...+++++++.|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 788888888888888888877776
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.15 E-value=2.7e-05 Score=80.04 Aligned_cols=94 Identities=12% Similarity=0.048 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhh
Q 037713 375 LQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYA 452 (610)
Q Consensus 375 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 452 (610)
...|..+..+|.+.|++++|+..+++. .+.| +...|..+..+|...|++++|+..|+++++++|++..++..+..++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 467888888999999999999998887 3334 57788899999999999999999999999999999999999999999
Q ss_pred hhcchhHHHH-HHHHHh
Q 037713 453 SAAMWQHVSK-VRKLMS 468 (610)
Q Consensus 453 ~~g~~~~a~~-~~~~m~ 468 (610)
+.|+++++.+ .++.|-
T Consensus 397 ~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 9999998774 444443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.13 E-value=8.4e-06 Score=67.09 Aligned_cols=107 Identities=10% Similarity=0.013 Sum_probs=56.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CC----CCC----HHHHHH
Q 037713 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PF----EPD----EPTWAA 412 (610)
Q Consensus 342 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~----~p~----~~~~~~ 412 (610)
+..+...+...|++++|...|+...+. .+.+...+..+...|...|++++|...+++. .. .++ ..+|..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 344444444555555555555554442 1223444555555555555555555555544 11 112 445666
Q ss_pred HHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHh
Q 037713 413 LLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVY 451 (610)
Q Consensus 413 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 451 (610)
+...+...|++++|...++++++..| ++.....+..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 66667777777777777777777666 344444444443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.11 E-value=7.3e-06 Score=67.71 Aligned_cols=94 Identities=5% Similarity=-0.014 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCc-------chHh
Q 037713 376 QHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS-------SYIL 446 (610)
Q Consensus 376 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~ 446 (610)
..+..+...|.+.|++++|++.|++. .+.| +...|..+..+|...|++++|+..++++++++|+++. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45666777888888888888888876 4444 4677888888889999999999999999888876654 5666
Q ss_pred HHHHhhhhcchhHHHHHHHHHhh
Q 037713 447 LSNVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 447 l~~~~~~~g~~~~a~~~~~~m~~ 469 (610)
++.+|...|++++|.+.++...+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 77888888999999998887643
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.08 E-value=4.4e-05 Score=74.97 Aligned_cols=120 Identities=12% Similarity=-0.031 Sum_probs=67.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----------------hhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 037713 272 CLFISNAIVDMYAKCSDIIAAKDIFGRMRR--KD----------------VVSWTSIIVGTAQHGQAEETLALYDEMVSA 333 (610)
Q Consensus 272 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~----------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 333 (610)
+...+..+...|.+.|++++|...|++..+ |+ ...|..+..+|.+.|++++|+..|++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 466888899999999999999999998763 22 245555555555555555555555555543
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 037713 334 GVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEA 394 (610)
Q Consensus 334 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 394 (610)
.. .+...+..+..++...|++++|...|+++.+. .+.+...+..+..++.+.|+.++|
T Consensus 226 ~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 226 DS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 21 13444444445555555555555555544432 112233344444444444444433
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.04 E-value=1.1e-05 Score=72.45 Aligned_cols=148 Identities=9% Similarity=-0.027 Sum_probs=82.4
Q ss_pred HHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCh----------------
Q 037713 244 IVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDV---------------- 304 (610)
Q Consensus 244 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~---------------- 304 (610)
........|.++.+.+.+....+.. ......+..+...|.+.|++++|...|++..+ .+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp ------------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 3344455666666666665332211 11345677788899999999999999998763 222
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 037713 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDL 384 (610)
Q Consensus 305 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 384 (610)
..|..+..+|...|++++|+..+++..+.. +.+...+..+..++...|++++|...|+...+. .+.+...+..+..+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~ 165 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELC 165 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHH
Confidence 556666666666677777777766666542 224555666666666666666666666666552 12234555555555
Q ss_pred HHhcCCHHHHH
Q 037713 385 LSRSGHLDEAE 395 (610)
Q Consensus 385 ~~~~g~~~~A~ 395 (610)
+...++.+++.
T Consensus 166 ~~~~~~~~~~~ 176 (198)
T 2fbn_A 166 VNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHH
Confidence 55555554444
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.04 E-value=7.3e-05 Score=61.56 Aligned_cols=59 Identities=7% Similarity=0.005 Sum_probs=26.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 037713 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI 366 (610)
Q Consensus 307 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 366 (610)
+..+...+.+.|++++|++.|++.++... -+...|..+..+|...|++++|++.++..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDP-SNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444444444444444444444444311 123444444444444444444444444443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.03 E-value=2.2e-05 Score=64.17 Aligned_cols=97 Identities=11% Similarity=0.056 Sum_probs=63.7
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 037713 343 VGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHH 420 (610)
Q Consensus 343 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~ 420 (610)
..+...+.+.|++++|...|+...+. -+.+...|..+..++.+.|++++|+..|++. .+.| +...|..+..++...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34455666777777777777777663 2335666777777777777777777777766 3344 456677777778888
Q ss_pred CchhHHHHHHHHHhcCCCCCC
Q 037713 421 RNTEMGTRVANHLLSLKPEDP 441 (610)
Q Consensus 421 g~~~~a~~~~~~~~~~~p~~~ 441 (610)
|++++|+..++++++.+|++.
T Consensus 99 g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHhCcCCC
Confidence 888888888888888877653
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.02 E-value=3.8e-05 Score=78.33 Aligned_cols=161 Identities=7% Similarity=-0.131 Sum_probs=91.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCH----HHHHHHHHHHhccCCHHHHHHHHHHhHHhc---CCCC-CHHH
Q 037713 307 WTSIIVGTAQHGQAEETLALYDEMVSAG-VKPNE----VTFVGLIYACSHVGLVGKGRKLFKSMIEDY---GITP-SLQH 377 (610)
Q Consensus 307 ~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~~-~~~~ 377 (610)
+..+...|...|++++|.+++.++...- ..++. ...+.+-..+...|+.+++..++....... +..+ ...+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4556666666777777776666654311 11111 112223333445566777777666554321 2222 2356
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-----C--CCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCC---CC----Cc
Q 037713 378 YTCLLDLLSRSGHLDEAENLIKAM-----P--FEPD-EPTWAALLSACKHHRNTEMGTRVANHLLSLKP---ED----PS 442 (610)
Q Consensus 378 ~~~li~~~~~~g~~~~A~~~~~~m-----~--~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p---~~----~~ 442 (610)
+..|...|...|++++|..++++. + .+|. ..++..++..|...|++++|..++++++...+ .+ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 667777777777777777776654 1 1122 34566666667777777777777777664321 11 12
Q ss_pred chHhHHHHhhhhcchhHHHHHHHHH
Q 037713 443 SYILLSNVYASAAMWQHVSKVRKLM 467 (610)
Q Consensus 443 ~~~~l~~~~~~~g~~~~a~~~~~~m 467 (610)
.+..++..+...|++++|.+.+...
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4456666677777777777665544
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.01 E-value=1.4e-05 Score=67.69 Aligned_cols=61 Identities=11% Similarity=-0.003 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHhcC-------CCCCCcch----HhHHHHhhhhcchhHHHHHHHHHhh
Q 037713 409 TWAALLSACKHHRNTEMGTRVANHLLSL-------KPEDPSSY----ILLSNVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 409 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~ 469 (610)
.|..+..++...|++++|+..+++++++ +|++..+| ...+.++...|++++|...++...+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6777777777777777777777777777 88877777 8888888888888888888777654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.00 E-value=3.5e-05 Score=76.73 Aligned_cols=137 Identities=10% Similarity=-0.000 Sum_probs=100.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 037713 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDL 384 (610)
Q Consensus 305 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 384 (610)
..|..+...+.+.|++++|+..|++..+. .|+.. .....+++.. .-+.+...|..+..+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~~~~~---------~~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDADGAK---------LQPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHHHHGG---------GHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChHHHHH---------HHHHHHHHHHHHHHH
Confidence 44666667777777777777777766542 00000 0001111100 011235788889999
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHH
Q 037713 385 LSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSK 462 (610)
Q Consensus 385 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 462 (610)
|.+.|++++|.+.+++. ...| +...|..+..++...|++++|+..++++++++|++...+..+..++...++.+++.+
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888 5556 477888899999999999999999999999999999999999999999988887765
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.00 E-value=4.6e-05 Score=62.65 Aligned_cols=97 Identities=12% Similarity=0.132 Sum_probs=58.8
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHH
Q 037713 345 LIYACSHVGLVGKGRKLFKSMIEDYGITPSL---QHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD----EPTWAALLSA 416 (610)
Q Consensus 345 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~ 416 (610)
+...+...|++++|...|+.+.+.. +.+. ..+..+...|.+.|++++|...|++. ...|+ ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 3444555666666666666665531 1122 35555666666677777776666665 22232 4456666666
Q ss_pred HHhcCchhHHHHHHHHHhcCCCCCCcc
Q 037713 417 CKHHRNTEMGTRVANHLLSLKPEDPSS 443 (610)
Q Consensus 417 ~~~~g~~~~a~~~~~~~~~~~p~~~~~ 443 (610)
+...|++++|...++++++..|+++..
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~ 112 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAA 112 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHH
Confidence 777777778887777777777765433
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.00 E-value=1.5e-05 Score=65.64 Aligned_cols=92 Identities=13% Similarity=0.094 Sum_probs=78.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC---CcchHhHHHH
Q 037713 379 TCLLDLLSRSGHLDEAENLIKAM-PFEPDE----PTWAALLSACKHHRNTEMGTRVANHLLSLKPED---PSSYILLSNV 450 (610)
Q Consensus 379 ~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~ 450 (610)
..+...+.+.|++++|...|++. ...|+. ..+..+..++...|++++|...++++++..|++ +.++..++.+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 34567788999999999999987 333432 477778888999999999999999999999998 6779999999
Q ss_pred hhhhcchhHHHHHHHHHhhC
Q 037713 451 YASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 451 ~~~~g~~~~a~~~~~~m~~~ 470 (610)
|...|++++|...++...+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999988653
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=0.0011 Score=64.04 Aligned_cols=211 Identities=11% Similarity=0.078 Sum_probs=148.8
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC----------HHHHHHHHHhcCC---CChhHHHHHHHHHHhcCC--
Q 037713 255 ELGKQIHGLVIALGYESCLFISNAIVDMYAKCSD----------IIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQ-- 319 (610)
Q Consensus 255 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~----------~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-- 319 (610)
++|......++..+ +.+..+|+.--..+...|. +++++.+++.+.. ++..+|+.-...+...|+
T Consensus 47 ~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~ 125 (331)
T 3dss_A 47 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 125 (331)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCccc
Confidence 46677777776654 3344555544333333332 6788888888763 578899988888888884
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhc----------
Q 037713 320 AEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGL-VGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRS---------- 388 (610)
Q Consensus 320 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---------- 388 (610)
+++++.+++++.+...+ |...|+.-...+...|. ++++++.+..+++. -+-|...|+....++.+.
T Consensus 126 ~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~ 202 (331)
T 3dss_A 126 WARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQG 202 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSCCC------
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhhcccccccc
Confidence 89999999999997654 77888877777777888 69999999999985 355677787777776665
Q ss_pred ----CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CchhHHHHHHHHHhcCCCCCCcchHhHHHH-
Q 037713 389 ----GHLDEAENLIKAM-PFEP-DEPTWAALLSACKHH-----------RNTEMGTRVANHLLSLKPEDPSSYILLSNV- 450 (610)
Q Consensus 389 ----g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~- 450 (610)
+.++++++.+++. ...| |...|+-+-..+... +.++++++.+++++++.|++.-.+..++..
T Consensus 203 ~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~ 282 (331)
T 3dss_A 203 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLM 282 (331)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHH
Confidence 4588888888877 3344 677777655555444 457899999999999999875444333322
Q ss_pred --hhhhcchhHHHHHHHHHhh
Q 037713 451 --YASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 451 --~~~~g~~~~a~~~~~~m~~ 469 (610)
....|..+++...+..+.+
T Consensus 283 ~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 283 RALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHCTTTTHHHHHHHHHHHHH
T ss_pred HhhcccccHHHHHHHHHHHHH
Confidence 2235666777777777754
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00011 Score=74.94 Aligned_cols=161 Identities=7% Similarity=-0.068 Sum_probs=95.1
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHhC-CCCc----hhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----C----ChhH
Q 037713 241 LSSIVGACANFAVLELGKQIHGLVIALG-YESC----LFISNAIVDMYAKCSDIIAAKDIFGRMRR-----K----DVVS 306 (610)
Q Consensus 241 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~----~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~----~~~~ 306 (610)
+..+...|...|+++++.+.+..+.+.- ..++ ..+.+.+...+...|+.+.|..++..... . -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 3444555555555555555555444321 0011 11223333444455666666666655431 1 1346
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc--CC--CCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc---CCCCC--HH
Q 037713 307 WTSIIVGTAQHGQAEETLALYDEMVSA--GV--KPN-EVTFVGLIYACSHVGLVGKGRKLFKSMIEDY---GITPS--LQ 376 (610)
Q Consensus 307 ~~~li~~~~~~g~~~~A~~l~~~m~~~--g~--~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~~~--~~ 376 (610)
+..+...|...|++++|..++++.... +. +|. ..++..+...|...|++++|..+++...... +.++. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 667778888888888888888876542 11 121 3467777888888888888888887765431 11111 25
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC
Q 037713 377 HYTCLLDLLSRSGHLDEAENLIKAM 401 (610)
Q Consensus 377 ~~~~li~~~~~~g~~~~A~~~~~~m 401 (610)
.+..+...+...|++++|...|.+.
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 5677777788888888887776554
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.96 E-value=5.2e-05 Score=62.16 Aligned_cols=105 Identities=11% Similarity=0.031 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC-CCC----HHHHHH
Q 037713 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGI-TPS----LQHYTC 380 (610)
Q Consensus 306 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-~~~----~~~~~~ 380 (610)
.|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++...+...- .++ ...+..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34444555555555555555555555432 223444555555555555555555555555442110 111 445555
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHH
Q 037713 381 LLDLLSRSGHLDEAENLIKAM-PFEPDEPTWA 411 (610)
Q Consensus 381 li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~ 411 (610)
+...|.+.|++++|.+.|++. ...|+...+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 116 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLK 116 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCHHHHH
Confidence 555566666666666665554 3334443333
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.93 E-value=4.6e-05 Score=65.15 Aligned_cols=60 Identities=10% Similarity=0.050 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHhcCCC------CCCcchHhHHHHhhhhcchhHHHHHHHHHh
Q 037713 409 TWAALLSACKHHRNTEMGTRVANHLLSLKP------EDPSSYILLSNVYASAAMWQHVSKVRKLMS 468 (610)
Q Consensus 409 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 468 (610)
.+..+...+...|++++|...++++++..+ .....+..++.+|...|++++|.+.++...
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 344455555566666666666665553321 112356667777777777777777766654
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.93 E-value=4.7e-05 Score=65.06 Aligned_cols=96 Identities=13% Similarity=0.028 Sum_probs=48.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCC-CHH
Q 037713 341 TFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPS----LQHYTCLLDLLSRSGHLDEAENLIKAM-------PFEP-DEP 408 (610)
Q Consensus 341 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~ 408 (610)
++..+...+...|++++|...++...+...-.++ ...+..+...+...|++++|.+.+++. +..+ ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 3444444455555555555555444332110111 234455555555666666665555544 1001 133
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHhcC
Q 037713 409 TWAALLSACKHHRNTEMGTRVANHLLSL 436 (610)
Q Consensus 409 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 436 (610)
.+..+...+...|++++|...+++.+++
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4555666677777777777777776643
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.92 E-value=5.7e-06 Score=67.16 Aligned_cols=59 Identities=8% Similarity=0.053 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHH
Q 037713 409 TWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLM 467 (610)
Q Consensus 409 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 467 (610)
.|..+...+...|++++|+..++++++.+|+++..+..++.+|...|++++|...++..
T Consensus 29 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 87 (117)
T 3k9i_A 29 CYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKI 87 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444555555555555555555555555555555555555555555555544444
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.89 E-value=3.9e-05 Score=66.24 Aligned_cols=76 Identities=17% Similarity=0.091 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCC-cchHhHHHH
Q 037713 375 LQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDP-SSYILLSNV 450 (610)
Q Consensus 375 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~ 450 (610)
...|..+..+|.+.|++++|...+++. .+.| +...|..+..++...|++++|...++++++++|+++ .....+..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 467888888888999999999888877 3344 477888888889999999999999999999999876 334344333
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.88 E-value=4e-05 Score=75.37 Aligned_cols=146 Identities=12% Similarity=-0.006 Sum_probs=81.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 037713 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLD 383 (610)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 383 (610)
...|..+...+.+.|++++|+..|++.... .|+... +...|+.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 456777778888889999999999887764 344432 223334444332211 236778888
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHh-hhhcchhHH
Q 037713 384 LLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVY-ASAAMWQHV 460 (610)
Q Consensus 384 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~a 460 (610)
+|.+.|++++|...+++. ...| +...|..+..++...|++++|+..|+++++++|+++.++..|..+. ...+..+.+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999888877 3344 5778888888899999999999999999999998888888887774 344566677
Q ss_pred HHHHHHHhh
Q 037713 461 SKVRKLMSV 469 (610)
Q Consensus 461 ~~~~~~m~~ 469 (610)
.+.++.|..
T Consensus 319 ~~~~~~~l~ 327 (338)
T 2if4_A 319 KEMYKGIFK 327 (338)
T ss_dssp ---------
T ss_pred HHHHHHhhC
Confidence 777776643
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00054 Score=72.15 Aligned_cols=169 Identities=8% Similarity=0.029 Sum_probs=134.3
Q ss_pred CHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC-
Q 037713 288 DIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQ----------AEETLALYDEMVSAGVKPNEVTFVGLIYACSHVG- 353 (610)
Q Consensus 288 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g- 353 (610)
..++|.+.++.+.. .+..+|+.--..+...|+ ++++++.++++.+...+ +..+|..-..++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 34677888877763 356778877777777776 89999999999887554 6778887777788888
Q ss_pred -CHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---------
Q 037713 354 -LVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSG-HLDEAENLIKAM-PFEP-DEPTWAALLSACKHH--------- 420 (610)
Q Consensus 354 -~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~--------- 420 (610)
+++++.+.++++.+. -+-+...|+.-..++.+.| .++++.+.++++ ...| |...|+.....+...
T Consensus 123 ~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 679999999999884 3446778888888888888 899999999888 5455 577788777776553
Q ss_pred -----CchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhH
Q 037713 421 -----RNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQH 459 (610)
Q Consensus 421 -----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 459 (610)
+.++++.+.+.+++..+|++..+|..+..++.+.++.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999888555
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.87 E-value=3.1e-05 Score=66.93 Aligned_cols=64 Identities=9% Similarity=0.062 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhC
Q 037713 407 EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 407 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 470 (610)
...|..+..++...|++++|+..++++++++|+++.+|..++.+|...|++++|...++...+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4678888888999999999999999999999999999999999999999999999999887653
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.86 E-value=5.4e-05 Score=74.40 Aligned_cols=152 Identities=7% Similarity=-0.028 Sum_probs=84.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 037713 273 LFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHV 352 (610)
Q Consensus 273 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 352 (610)
...+..+...|.+.|++++|...|++....+.... .+...|+.+++...+. ...|..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 45677888899999999999999998764221111 1223344444443321 13677888899999
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHH-HHhcCchhHHHHH
Q 037713 353 GLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPDE-PTWAALLSA-CKHHRNTEMGTRV 429 (610)
Q Consensus 353 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~-~~~~g~~~~a~~~ 429 (610)
|++++|...++...+. .+.+...|..+..+|...|++++|...|++. .+.|+. ..+..+... ....+..+.+...
T Consensus 244 g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998874 3446788999999999999999999999998 566654 344444444 3445677888899
Q ss_pred HHHHhcCCCCCC
Q 037713 430 ANHLLSLKPEDP 441 (610)
Q Consensus 430 ~~~~~~~~p~~~ 441 (610)
++++++..|.++
T Consensus 322 ~~~~l~~~p~~~ 333 (338)
T 2if4_A 322 YKGIFKGKDEGG 333 (338)
T ss_dssp ------------
T ss_pred HHHhhCCCCCCC
Confidence 999999888764
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.85 E-value=7.9e-05 Score=63.05 Aligned_cols=73 Identities=12% Similarity=0.031 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-C-------CCCC-HHHH----HHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcc
Q 037713 377 HYTCLLDLLSRSGHLDEAENLIKAM-P-------FEPD-EPTW----AALLSACKHHRNTEMGTRVANHLLSLKPEDPSS 443 (610)
Q Consensus 377 ~~~~li~~~~~~g~~~~A~~~~~~m-~-------~~p~-~~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 443 (610)
.|..+..++.+.|++++|+..+++. . +.|+ ...| .....++...|++++|+..|+++++++|.+...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5666666666666666666666554 3 3776 4577 889999999999999999999999999998876
Q ss_pred hHhHHH
Q 037713 444 YILLSN 449 (610)
Q Consensus 444 ~~~l~~ 449 (610)
+..+..
T Consensus 139 ~~~~~~ 144 (159)
T 2hr2_A 139 TPGKER 144 (159)
T ss_dssp CTTHHH
T ss_pred HHHHHH
Confidence 655533
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.79 E-value=5.1e-05 Score=60.39 Aligned_cols=90 Identities=10% Similarity=0.002 Sum_probs=70.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC------CcchH
Q 037713 374 SLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED------PSSYI 445 (610)
Q Consensus 374 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 445 (610)
+...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4566777888888888888888888877 3334 57778888888999999999999999999999987 56677
Q ss_pred hHHHHhhhhcchhHHHHH
Q 037713 446 LLSNVYASAAMWQHVSKV 463 (610)
Q Consensus 446 ~l~~~~~~~g~~~~a~~~ 463 (610)
.++.++...|++++|.+.
T Consensus 83 ~~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHHhHhhhHhH
Confidence 777777777776666543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.78 E-value=1.7e-05 Score=64.36 Aligned_cols=90 Identities=14% Similarity=0.169 Sum_probs=53.1
Q ss_pred cCCHHHHHHHHHHhHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHH
Q 037713 352 VGLVGKGRKLFKSMIEDYG--ITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGT 427 (610)
Q Consensus 352 ~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 427 (610)
.|++++|+..|++..+. + -+.+...+..+...|.+.|++++|.+.|++. ...| +...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 35555666666665541 1 1223455666666666777777777766665 2233 3556666666677777777777
Q ss_pred HHHHHHhcCCCCCCc
Q 037713 428 RVANHLLSLKPEDPS 442 (610)
Q Consensus 428 ~~~~~~~~~~p~~~~ 442 (610)
..++++++..|+++.
T Consensus 82 ~~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 82 ELLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHHHCCCHH
T ss_pred HHHHHHHHhCCCcHH
Confidence 777777777776653
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00011 Score=75.45 Aligned_cols=126 Identities=14% Similarity=0.095 Sum_probs=94.2
Q ss_pred HHhccCCHHHHHHHHHHhHHhcC--C---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-HHHHH
Q 037713 348 ACSHVGLVGKGRKLFKSMIEDYG--I---TPS-LQHYTCLLDLLSRSGHLDEAENLIKAM---------PFEPD-EPTWA 411 (610)
Q Consensus 348 a~~~~g~~~~a~~~~~~~~~~~~--~---~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~ 411 (610)
.+...|++++|..++++..+... + .|+ ..+++.|..+|...|++++|+.++++. +..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 34567888888888777665421 1 122 367888888888889988888887765 23344 45688
Q ss_pred HHHHHHHhcCchhHHHHHHHHHhc-----CCCCCCc---chHhHHHHhhhhcchhHHHHHHHHHhhCCCc
Q 037713 412 ALLSACKHHRNTEMGTRVANHLLS-----LKPEDPS---SYILLSNVYASAAMWQHVSKVRKLMSVMEVK 473 (610)
Q Consensus 412 ~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 473 (610)
.|...|...|++++|+.+++++++ ++|++|. ....|..++...|++++|+.++..+++.-.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~ 467 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALN 467 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888889999999999999998874 4666654 4457888889999999999999999875433
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00011 Score=55.93 Aligned_cols=81 Identities=17% Similarity=0.260 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhh
Q 037713 375 LQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYA 452 (610)
Q Consensus 375 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 452 (610)
...+..+...|.+.|++++|...+++. ...| +...|..+...+...|++++|...++++++.+|.++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456777777888888888888888776 3333 56778888888999999999999999999999988888888888876
Q ss_pred hhc
Q 037713 453 SAA 455 (610)
Q Consensus 453 ~~g 455 (610)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 554
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00018 Score=56.21 Aligned_cols=64 Identities=17% Similarity=0.131 Sum_probs=57.8
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhh
Q 037713 406 DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 406 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 469 (610)
+...|..+...+...|++++|+..++++++++|+++.+|..++.+|...|++++|.+.++...+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5677888888899999999999999999999999999999999999999999999999887754
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0008 Score=69.05 Aligned_cols=129 Identities=9% Similarity=0.014 Sum_probs=91.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 037713 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN--------------EVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369 (610)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--------------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 369 (610)
...|..+...|.+.|++++|+..|++..+...... ...|..+..++.+.|++++|+..++.+.+.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 346 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL- 346 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 44566667777777777777777777766422111 467888888888899999999999888774
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHH-HHHHHh
Q 037713 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD-EPTWAALLSACKHHRNTEMGTR-VANHLL 434 (610)
Q Consensus 370 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~-~~~~~~ 434 (610)
.+.+...|..+..+|.+.|++++|...|++. .+.|+ ...+..+...+...++.+++.+ .+++++
T Consensus 347 -~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 347 -DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp -STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred -CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446778888888999999999999988887 55664 4567777777778887777764 344444
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0007 Score=67.22 Aligned_cols=117 Identities=10% Similarity=-0.007 Sum_probs=67.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC-------------------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 037713 276 SNAIVDMYAKCSDIIAAKDIFGRMRR-------------------KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVK 336 (610)
Q Consensus 276 ~~~li~~y~~~g~~~~A~~~~~~~~~-------------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 336 (610)
+..+...|.+.|++++|...|++..+ .+...|..+..+|.+.|++++|++.+++..+...
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p- 304 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP- 304 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc-
Confidence 44455566666666666666655432 1345566666666666666666666666665421
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037713 337 PNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAE 395 (610)
Q Consensus 337 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 395 (610)
-+...+..+..++...|++++|...|+++.+. .+.+...+..+..++.+.++.+++.
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 24555666666666666666666666666552 1224455555555555555555544
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00018 Score=57.82 Aligned_cols=76 Identities=9% Similarity=0.026 Sum_probs=56.6
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhh
Q 037713 394 AENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 394 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 469 (610)
|.+.|++. ...| +...|..+...+...|++++|+..++++++.+|+++..+..++.+|...|++++|...++...+
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455544 3334 4667777777788888888888888888888888888888888888888888888888777654
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00017 Score=60.84 Aligned_cols=84 Identities=11% Similarity=0.064 Sum_probs=62.2
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCc----------hhHHHHHHHHHhcCCCCCCcchHhHHHHhhhh
Q 037713 387 RSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRN----------TEMGTRVANHLLSLKPEDPSSYILLSNVYASA 454 (610)
Q Consensus 387 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 454 (610)
+.+.+++|.+.+++. ...| +...|..+..++...++ +++|+..|+++++++|++..+|..++++|.+.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 444555666555555 2333 34555555555555544 56999999999999999999999999999987
Q ss_pred c-----------chhHHHHHHHHHhhC
Q 037713 455 A-----------MWQHVSKVRKLMSVM 470 (610)
Q Consensus 455 g-----------~~~~a~~~~~~m~~~ 470 (610)
| ++++|.+.+++..+.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHh
Confidence 5 899999999988754
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00094 Score=68.60 Aligned_cols=93 Identities=10% Similarity=0.016 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC-------C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCC-CC
Q 037713 275 ISNAIVDMYAKCSDIIAAKDIFGRMRR-------K----DVVSWTSIIVGTAQHGQAEETLALYDEMVS-----AGV-KP 337 (610)
Q Consensus 275 ~~~~li~~y~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~-~p 337 (610)
+++.|...|...|++++|..++++..+ + ...+++.|...|...|++++|+.++++..+ .|. .|
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp 432 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP 432 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 444455555555555555554444331 1 134566666666666777777666666543 121 12
Q ss_pred C-HHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 037713 338 N-EVTFVGLIYACSHVGLVGKGRKLFKSMIE 367 (610)
Q Consensus 338 ~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 367 (610)
+ ..+...+-.++...+.+++|..++..+.+
T Consensus 433 ~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 433 ITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 22334444555566666667666666654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0062 Score=64.04 Aligned_cols=151 Identities=12% Similarity=0.031 Sum_probs=119.7
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC----------HHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHH
Q 037713 317 HGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGL----------VGKGRKLFKSMIEDYGITPSLQHYTCLLDLLS 386 (610)
Q Consensus 317 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 386 (610)
....++|++.++++.+.... +...|+.--.++.+.|+ ++++.+.++.+.+. -+-+..+|..-..++.
T Consensus 42 ~~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 42 GELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLS 118 (567)
T ss_dssp TCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 34457889999999986332 45556655555555666 89999999999884 4456778888888888
Q ss_pred hcC--CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-chhHHHHHHHHHhcCCCCCCcchHhHHHHhhhh-------
Q 037713 387 RSG--HLDEAENLIKAM-PFEP-DEPTWAALLSACKHHR-NTEMGTRVANHLLSLKPEDPSSYILLSNVYASA------- 454 (610)
Q Consensus 387 ~~g--~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------- 454 (610)
+.| +++++.++++++ ...| |...|+.-.......| .++++++.++++++.+|.+..+|...+.++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 999 779999999999 3333 7888988888888888 899999999999999999999999988888774
Q ss_pred -------cchhHHHHHHHHHhhC
Q 037713 455 -------AMWQHVSKVRKLMSVM 470 (610)
Q Consensus 455 -------g~~~~a~~~~~~m~~~ 470 (610)
++++++.+.++.....
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~ 221 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFT 221 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHhh
Confidence 6678888887776543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00028 Score=55.87 Aligned_cols=63 Identities=14% Similarity=0.163 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 037713 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE 367 (610)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 367 (610)
...|..+...+...|++++|++.|++..+.. +.+...+..+..++...|++++|...++...+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3445555555566666666666666655542 12445555555555566666666666555543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0013 Score=50.38 Aligned_cols=70 Identities=14% Similarity=0.058 Sum_probs=58.5
Q ss_pred CCCHHHHHHHHHHHHhcCc---hhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhCCCc
Q 037713 404 EPDEPTWAALLSACKHHRN---TEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVK 473 (610)
Q Consensus 404 ~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 473 (610)
.+|+..+..+..++...++ .++|..+++++++.+|+++.+...++..+.+.|++++|...++.+.+....
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3467777777777654444 799999999999999999999999999999999999999999999875443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00021 Score=60.29 Aligned_cols=50 Identities=14% Similarity=0.242 Sum_probs=34.4
Q ss_pred HHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc-----------CchhHHHHHHHHHhcCCCCCC
Q 037713 392 DEAENLIKAM-PFEPD-EPTWAALLSACKHH-----------RNTEMGTRVANHLLSLKPEDP 441 (610)
Q Consensus 392 ~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~ 441 (610)
++|+..|++. .+.|+ ...|..+..+|... |++++|++.|+++++++|++.
T Consensus 63 ~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 3555555555 33443 44555566665554 589999999999999999874
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0016 Score=52.11 Aligned_cols=80 Identities=14% Similarity=0.117 Sum_probs=49.6
Q ss_pred HHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhc
Q 037713 358 GRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLS 435 (610)
Q Consensus 358 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 435 (610)
+...|+...+ ..+.+...+..+...|.+.|++++|...|++. ...| +...|..+...+...|++++|...++++++
T Consensus 4 a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4445555544 12334566666666667777777777766665 2233 355666677777777777777777777776
Q ss_pred CCCC
Q 037713 436 LKPE 439 (610)
Q Consensus 436 ~~p~ 439 (610)
+.|.
T Consensus 82 ~~~~ 85 (115)
T 2kat_A 82 AAQS 85 (115)
T ss_dssp HHHH
T ss_pred hccc
Confidence 6653
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.08 E-value=0.007 Score=50.27 Aligned_cols=111 Identities=12% Similarity=-0.033 Sum_probs=69.7
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHh----cCCHHH
Q 037713 318 GQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSR----SGHLDE 393 (610)
Q Consensus 318 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~ 393 (610)
++.++|+++|++..+.| .|+.. |...|...+.+++|.++|++..+. .+...+..|..+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 45677777777777766 33433 555566666777777777777663 345666666666666 667777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCchhHHHHHHHHHhcCC
Q 037713 394 AENLIKAMPFEPDEPTWAALLSACKH----HRNTEMGTRVANHLLSLK 437 (610)
Q Consensus 394 A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~ 437 (610)
|.+.|++.-..-+...+..|...|.. .++.++|...++++.+.+
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 77776665212345555556666665 566666666666666554
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.08 E-value=0.011 Score=49.12 Aligned_cols=86 Identities=7% Similarity=-0.067 Sum_probs=40.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC-CChhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc--
Q 037713 279 IVDMYAKCSDIIAAKDIFGRMRR-KDVVSWTSIIVGTAQ----HGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSH-- 351 (610)
Q Consensus 279 li~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-- 351 (610)
|..+|...+.+++|.+.|++..+ .+..++..|...|.. .++.++|+++|++..+.| +...+..|...|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~ 107 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGK 107 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCC
Confidence 33334343444444444444332 234444444444444 455555555555555443 33444444444444
Q ss_pred --cCCHHHHHHHHHHhHH
Q 037713 352 --VGLVGKGRKLFKSMIE 367 (610)
Q Consensus 352 --~g~~~~a~~~~~~~~~ 367 (610)
.+++++|..+|+...+
T Consensus 108 g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 108 GVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp SSCCCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHH
Confidence 4555555555555544
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0028 Score=63.99 Aligned_cols=116 Identities=14% Similarity=0.171 Sum_probs=79.0
Q ss_pred HHHHHhcCCHHHHHHHHHhC------CCCCC----HHHHHHHHHHHHhcCchhHHHHHHHHHhc-----CCCCCC---cc
Q 037713 382 LDLLSRSGHLDEAENLIKAM------PFEPD----EPTWAALLSACKHHRNTEMGTRVANHLLS-----LKPEDP---SS 443 (610)
Q Consensus 382 i~~~~~~g~~~~A~~~~~~m------~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~ 443 (610)
+.-+.+.|++++|++++++. -+.|+ ..+++.|..+|...|++++|+.+++++++ ++|++| .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 33455677888887777655 12222 45677788888888888888888888773 334443 46
Q ss_pred hHhHHHHhhhhcchhHHHHHHHHHhhCCCccCCcccEEEECCEEEEEEeccCCCCChHHHHHHHHHHHHHHH
Q 037713 444 YILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMK 515 (610)
Q Consensus 444 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~ 515 (610)
+..|+.+|..+|++++|..++++..+--.. . -...||...+++..+.+...+|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~-~-----------------lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRV-T-----------------HGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-H-----------------TCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-h-----------------cCCCChHHHHHHHHHHHHHHHHh
Confidence 778888999999999999888876542110 0 01368888888877777776665
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0036 Score=48.57 Aligned_cols=64 Identities=19% Similarity=0.217 Sum_probs=32.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 037713 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE 367 (610)
Q Consensus 303 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 367 (610)
+...|..+...|...|++++|+..|++..+.... +...|..+..++...|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444555555555555555555555555543211 234445555555555555555555555443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0092 Score=44.76 Aligned_cols=79 Identities=13% Similarity=0.150 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 037713 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDL 384 (610)
Q Consensus 305 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 384 (610)
..|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+. .+.+...+..+..+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCHHHHHHHHHH
Confidence 344555555555666666666666555432 123445555555666666666666666655542 12234444444444
Q ss_pred HH
Q 037713 385 LS 386 (610)
Q Consensus 385 ~~ 386 (610)
+.
T Consensus 87 ~~ 88 (91)
T 1na3_A 87 KQ 88 (91)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.015 Score=56.27 Aligned_cols=137 Identities=12% Similarity=0.026 Sum_probs=72.8
Q ss_pred CChhHHHHHHHHHHh--cC---ChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhc----cC-C---HHHHHHHHHHhHH
Q 037713 302 KDVVSWTSIIVGTAQ--HG---QAEETLALYDEMVSAGVKPN-EVTFVGLIYACSH----VG-L---VGKGRKLFKSMIE 367 (610)
Q Consensus 302 ~~~~~~~~li~~~~~--~g---~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~----~g-~---~~~a~~~~~~~~~ 367 (610)
.+..+|...+.+... .+ ...+|..+|++..+. .|+ ...|..+..++.. .+ . .....+.+.....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 366667766655432 23 246888888888875 454 3344433333320 00 0 0111111111111
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC
Q 037713 368 DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440 (610)
Q Consensus 368 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 440 (610)
....+.+..+|..+.-.+...|++++|...++++ ...|+...|..+...+...|++++|.+.+++++.++|..
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 0122445566666655555567777777776666 334665555555555666777777777777777776654
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0074 Score=60.83 Aligned_cols=92 Identities=10% Similarity=0.080 Sum_probs=61.4
Q ss_pred ccCCHHHHHHHHHHhHHhcC--CC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHH
Q 037713 351 HVGLVGKGRKLFKSMIEDYG--IT---PS-LQHYTCLLDLLSRSGHLDEAENLIKAM---------PFEPD-EPTWAALL 414 (610)
Q Consensus 351 ~~g~~~~a~~~~~~~~~~~~--~~---~~-~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll 414 (610)
+.|++++|..++++..+... +. |+ ..+++.|..+|...|++++|+.++++. +..|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 34667777777766554311 11 22 366777778888888888887777665 23344 45677888
Q ss_pred HHHHhcCchhHHHHHHHHHhc-----CCCCCCc
Q 037713 415 SACKHHRNTEMGTRVANHLLS-----LKPEDPS 442 (610)
Q Consensus 415 ~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~ 442 (610)
..|..+|++++|+.+++++++ ++|++|.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~ 422 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPY 422 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 888888888888888888764 4676653
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.66 E-value=6.1e-05 Score=74.19 Aligned_cols=237 Identities=10% Similarity=0.077 Sum_probs=143.7
Q ss_pred cchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 037713 69 HVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVD 148 (610)
Q Consensus 69 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 148 (610)
...|+.|..+....++..+|++.|-+. -|+..|..++.++.+.|.++.-...+....+. ..++.+=+.|+-
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA-------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ 124 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF 124 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC-------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC-------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHH
Confidence 344888888888888888887655321 25566778888888888888877777655554 344555677888
Q ss_pred HHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCC------------------------CChhh
Q 037713 149 MYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPV------------------------RNLFL 204 (610)
Q Consensus 149 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------------------~~~~~ 204 (610)
+|++.+++.+-++++ ..+|+.-.....+-|...|.++.|.-+|..+.. .++.+
T Consensus 125 ayAk~~rL~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp HHHTSCSSSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred HHHhhCcHHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 888888876544332 235665666677777777777777777765541 25667
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 037713 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYA 284 (610)
Q Consensus 205 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 284 (610)
|-.+-.+|+..+.+.-|.-.--.+.-. +.....++..|-..|.+++-..+++..... -.....+++-|.-.|+
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIvh------adeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYs 274 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVVH------ADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYS 274 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHCC------SSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHhcchhccc------HHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHH
Confidence 888877877777776654443333321 111223444555666666666665554421 1345667777777777
Q ss_pred hcCCHHHHHHHHHhcC----CC-------ChhHHHHHHHHHHhcCChHHHHH
Q 037713 285 KCSDIIAAKDIFGRMR----RK-------DVVSWTSIIVGTAQHGQAEETLA 325 (610)
Q Consensus 285 ~~g~~~~A~~~~~~~~----~~-------~~~~~~~li~~~~~~g~~~~A~~ 325 (610)
|-. .++-.+.++... -| ....|.-++-.|.+..+++.|..
T Consensus 275 KY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 275 KFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp SSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred hcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 652 222222222211 11 34557777777777777766543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.014 Score=58.97 Aligned_cols=99 Identities=12% Similarity=-0.009 Sum_probs=67.9
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcC--CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-HHH
Q 037713 346 IYACSHVGLVGKGRKLFKSMIEDYG--ITP----SLQHYTCLLDLLSRSGHLDEAENLIKAM---------PFEPD-EPT 409 (610)
Q Consensus 346 l~a~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~ 409 (610)
+..+.+.|++++|..++++..+... +.| ...+++.|..+|...|++++|+.++++. +..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 3445566777777777777654311 112 1356777888888888888888877765 23344 456
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHhc-----CCCCCCcch
Q 037713 410 WAALLSACKHHRNTEMGTRVANHLLS-----LKPEDPSSY 444 (610)
Q Consensus 410 ~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~ 444 (610)
++.|...|...|++++|+.+++++++ ++|++|.+-
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 413 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIE 413 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 78888889999999999999988874 567766443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0069 Score=46.55 Aligned_cols=64 Identities=14% Similarity=0.258 Sum_probs=47.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcch
Q 037713 381 LLDLLSRSGHLDEAENLIKAM-PFEP-DEP-TWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSY 444 (610)
Q Consensus 381 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 444 (610)
....+.+.|++++|.+.|++. ...| +.. .|..+..++...|++++|+..++++++++|+++..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 345566778888888888776 3344 455 677777778888888888888888888888876655
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0025 Score=64.23 Aligned_cols=83 Identities=10% Similarity=0.000 Sum_probs=66.8
Q ss_pred hcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhc-----CCCCCC---cchHhHH
Q 037713 387 RSGHLDEAENLIKAM---------PFEPD-EPTWAALLSACKHHRNTEMGTRVANHLLS-----LKPEDP---SSYILLS 448 (610)
Q Consensus 387 ~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~~l~ 448 (610)
..|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.+++++++ ++|++| .+|..|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457889998888765 22333 46788999999999999999999999884 345544 4688999
Q ss_pred HHhhhhcchhHHHHHHHHHhh
Q 037713 449 NVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 449 ~~~~~~g~~~~a~~~~~~m~~ 469 (610)
.+|..+|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999988754
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.45 E-value=0.076 Score=42.49 Aligned_cols=139 Identities=8% Similarity=-0.005 Sum_probs=101.0
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037713 316 QHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAE 395 (610)
Q Consensus 316 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 395 (610)
-.|..++..++..+.... .+..-||.++--....-+-+-..+.++.+-+-+ | ...+|++....
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiF----D----------is~C~NlKrVi 81 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYF----D----------LDKCQNLKSVV 81 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGS----C----------GGGCSCTHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhc----C----------cHhhhcHHHHH
Confidence 356777777777776654 245556666655555556666666666553322 2 13567777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhCCCc
Q 037713 396 NLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVK 473 (610)
Q Consensus 396 ~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 473 (610)
.-+-.++ .+...+..-+.....+|.-++-.+++..++.-+|.+|.....++++|.+.|+..+|.+++++.-++|++
T Consensus 82 ~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 82 ECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 7776664 245566778888999999999999999987777778899999999999999999999999999999885
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.43 E-value=0.18 Score=55.47 Aligned_cols=129 Identities=16% Similarity=0.104 Sum_probs=72.6
Q ss_pred HHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHH
Q 037713 144 SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFY 223 (610)
Q Consensus 144 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 223 (610)
..++..+.+.|..++|.++.+.- ..-.....+.|++++|.++.+.+. +...|..+...+.+.|+++.|.+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~--------~~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~ 702 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQ--------DQKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIE 702 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCH--------HHHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCCc--------chheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHH
Confidence 56666677777777776655321 111233456777777777776653 45677788888888888888887
Q ss_pred HHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 037713 224 SFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGR 298 (610)
Q Consensus 224 ~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 298 (610)
.|.++.. . ..+...+...++.+....+-+.+...| -++.-..+|.++|++++|.+++.+
T Consensus 703 ~y~~~~d-------~---~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 703 AFTNAHD-------L---ESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHTC-------H---HHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHccC-------h---hhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHH
Confidence 7776632 1 122333333455554444444433333 122333445556666666555443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.35 E-value=0.017 Score=48.12 Aligned_cols=64 Identities=11% Similarity=0.016 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHHhcC---chhHHHHHHHHHhcCC-C-CCCcchHhHHHHhhhhcchhHHHHHHHHHh
Q 037713 405 PDEPTWAALLSACKHHR---NTEMGTRVANHLLSLK-P-EDPSSYILLSNVYASAAMWQHVSKVRKLMS 468 (610)
Q Consensus 405 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 468 (610)
++..+...+..++.+.+ +.++|+.+++.+++.+ | .+...+..|+-+|.+.|++++|.+.++.+.
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL 98 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLL 98 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34444444555555544 4445666666555554 4 234455555556666666666666655554
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.006 Score=46.93 Aligned_cols=58 Identities=16% Similarity=0.278 Sum_probs=53.0
Q ss_pred HHHHHHhcCchhHHHHHHHHHhcCCCCCCc-chHhHHHHhhhhcchhHHHHHHHHHhhC
Q 037713 413 LLSACKHHRNTEMGTRVANHLLSLKPEDPS-SYILLSNVYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 413 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 470 (610)
....+...|++++|...++++++.+|+++. .+..++.+|...|++++|.+.++...+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 445678899999999999999999999999 9999999999999999999999998754
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=95.93 E-value=0.23 Score=48.03 Aligned_cols=72 Identities=10% Similarity=0.142 Sum_probs=44.2
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHH
Q 037713 302 KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY 378 (610)
Q Consensus 302 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 378 (610)
.+..+|.++...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.+++... +.|...+|
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr---L~P~~~t~ 346 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN---LRPGANTL 346 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCSHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCcChH
Confidence 355566666555555677777777777666653 5666665666666666777777766666654 34554444
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.92 E-value=0.24 Score=54.54 Aligned_cols=103 Identities=13% Similarity=0.171 Sum_probs=60.1
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 037713 281 DMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK 360 (610)
Q Consensus 281 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 360 (610)
+....+|++++|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...+
T Consensus 660 ~~~l~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~ 728 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVT 728 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHH
T ss_pred ehhhhcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHH
Confidence 3445678888887776665 3557788888888888888888888877642 1223333444555555444
Q ss_pred HHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037713 361 LFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401 (610)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 401 (610)
+-+..... | -++.-..+|.+.|++++|.+++.++
T Consensus 729 ~~~~a~~~-~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 729 LAKDAETT-G------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHc-C------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 44333321 1 1223334455566666666666555
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.056 Score=41.03 Aligned_cols=78 Identities=12% Similarity=0.040 Sum_probs=55.0
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHh
Q 037713 372 TPSLQHYTCLLDLLSRSGH---LDEAENLIKAM-PFEPD-EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYIL 446 (610)
Q Consensus 372 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 446 (610)
+.+...+..+..++...++ .++|..++++. ...|+ ...+..+...+...|++++|+..++++++.+|++ .....
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~-~~~~~ 81 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN-LDRVT 81 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT-CCHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-ccHHH
Confidence 4566777777777754444 68888888887 44554 5566666677888999999999999999988873 33444
Q ss_pred HHHH
Q 037713 447 LSNV 450 (610)
Q Consensus 447 l~~~ 450 (610)
+...
T Consensus 82 i~~~ 85 (93)
T 3bee_A 82 IIES 85 (93)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.025 Score=52.47 Aligned_cols=87 Identities=11% Similarity=0.146 Sum_probs=61.8
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCchhHHHHHHHHHhcCCCCC-CcchHhHHHHhhhh-cchhH
Q 037713 391 LDEAENLIKAM-PFEPD---EPTWAALLSACKH-----HRNTEMGTRVANHLLSLKPED-PSSYILLSNVYASA-AMWQH 459 (610)
Q Consensus 391 ~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 459 (610)
..+|...+++. .+.|+ ...|..|...|.. -|+.++|.+.|+++++++|+. ..+++..++.++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34455555554 45555 4556666666766 488888888888888888864 88888888888774 88888
Q ss_pred HHHHHHHHhhCCCccCCc
Q 037713 460 VSKVRKLMSVMEVKKEPG 477 (610)
Q Consensus 460 a~~~~~~m~~~~~~~~~~ 477 (610)
+.+.++..........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 888888887665554454
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0017 Score=64.28 Aligned_cols=398 Identities=10% Similarity=0.045 Sum_probs=241.5
Q ss_pred CCchHHHHHHHhhcCCChHHHHHHHccCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHh
Q 037713 37 YGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACG 116 (610)
Q Consensus 37 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~ 116 (610)
.+.+|..|..++.+.|++.+|.+-|=+ ..|+..|..+|.+..+.|.+++-+..+.-.++. .-+...=+.|+-+|+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~---~ke~~IDteLi~ayA 127 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETELIFALA 127 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT---CCSTTTTHHHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---hcccccHHHHHHHHH
Confidence 567899999999999999988876644 456677889999999999999988887766553 234455567888999
Q ss_pred ccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcC------------------------CCChh
Q 037713 117 SLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIK------------------------LKNSV 172 (610)
Q Consensus 117 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~------------------------~~~~~ 172 (610)
+.+++.+-++++. .|+..-...+.+-+...|.++.|.-+|..+. ..++.
T Consensus 128 k~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~k 200 (624)
T 3lvg_A 128 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR 200 (624)
T ss_dssp TSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSC
T ss_pred hhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 9998876544432 4676667778888889999999988887764 13778
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhh-CCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhcc
Q 037713 173 SWTAMLSAYARSGRKKDAMEIFEQ-APVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANF 251 (610)
Q Consensus 173 ~~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~ 251 (610)
||-.+-.+|...+.+.-|.-.--. +..+| -...++.-|-..|.+++-+.+++.-. |......-.|+-+.-.|++-
T Consensus 201 tWKeV~~ACvd~~EfrLAqicGLniIvhad--eL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 201 TWKEVCFACVDGKEFRLAQMCGLHIVVHAD--ELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILYSKF 276 (624)
T ss_dssp SHHHHTHHHHHSCTTTTTTHHHHHHHCCSS--CCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHhCchHHHHHHHhcchhcccHH--HHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHhc
Confidence 999999999999988776544222 11111 11235566888899999998888776 34446677777777777764
Q ss_pred ccHHHHHHHHHHHH-HhCCCC------chhHHHHHHHHHHhcCCHHHHHHH-------------HHhcCC--CChhHHHH
Q 037713 252 AVLELGKQIHGLVI-ALGYES------CLFISNAIVDMYAKCSDIIAAKDI-------------FGRMRR--KDVVSWTS 309 (610)
Q Consensus 252 ~~~~~a~~~~~~~~-~~~~~~------~~~~~~~li~~y~~~g~~~~A~~~-------------~~~~~~--~~~~~~~~ 309 (610)
. .++..+.++... +.+++. ....|.-++-.|.+-.+++.|... |.++.. .|...|-.
T Consensus 277 ~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~KVaN~EiyYK 355 (624)
T 3lvg_A 277 K-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYR 355 (624)
T ss_dssp C-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGGCSCSHHHHH
T ss_pred C-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHHcchHHHHHH
Confidence 3 222222221111 112221 345688888999999999877432 111111 24444433
Q ss_pred ---------------HHHHHHhcCChHHHHHHHHHHHHcC-CCC--------CHHHHH-HHHHHHhccCCHHHHHH----
Q 037713 310 ---------------IIVGTAQHGQAEETLALYDEMVSAG-VKP--------NEVTFV-GLIYACSHVGLVGKGRK---- 360 (610)
Q Consensus 310 ---------------li~~~~~~g~~~~A~~l~~~m~~~g-~~p--------~~~t~~-~ll~a~~~~g~~~~a~~---- 360 (610)
|+.++...=+...+.++|++.-... ++| |....| ++-..|....+++.-+.
T Consensus 356 Ai~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SId~ 435 (624)
T 3lvg_A 356 AIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDA 435 (624)
T ss_dssp HHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHTTSS
T ss_pred HHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 4444443444555555555421100 111 222222 23334444444433221
Q ss_pred --------HHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHH
Q 037713 361 --------LFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANH 432 (610)
Q Consensus 361 --------~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 432 (610)
+-+++.+ .+-.+.-..-...|.+.++++++.++.++=++-.| .+...+..|+.+.++++++-
T Consensus 436 ydNFD~i~LA~rLEk----HeL~eFRrIAA~LYkkn~rw~qsi~l~KkDklykD------AietAa~S~~~elaeeLL~y 505 (624)
T 3lvg_A 436 YDNFDNISLAQRLEK----HELIEFRRIAAYLFKGNNRWKQSVELCKKDSLYKD------AMQYASESKDTELAEELLQW 505 (624)
T ss_dssp CCCSCTTHHHHHHHT----CSSHHHHHHHHHHHHTTCHHHHHSSCSSTTCCTTG------GGTTTTTCCCTTHHHHHHHH
T ss_pred hccccHHHHHHHHhh----CchHHHHHHHHHHHHhcccHHHHHHHHHhcccHHH------HHHHHHHcCCHHHHHHHHHH
Confidence 1111111 11223333445567788888888777655433222 33445677888888888877
Q ss_pred HhcCCCCCCcchHhHHHHhhhhcchhHHHHH
Q 037713 433 LLSLKPEDPSSYILLSNVYASAAMWQHVSKV 463 (610)
Q Consensus 433 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 463 (610)
.++.+- ...|....-.|...=+.+-+.++
T Consensus 506 Fv~~g~--~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 506 FLQEEK--RECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp HHHHCS--THHHHHHHHHTSSSSSCHHHHHH
T ss_pred HHHcCc--hHHHHHHHHHHhhccChHHHHHH
Confidence 776543 35566666666555566555543
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=3 Score=43.77 Aligned_cols=114 Identities=11% Similarity=0.126 Sum_probs=70.9
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHH----HHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 037713 318 GQAEETLALYDEMVSAGVKPNEVTFV----GLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDE 393 (610)
Q Consensus 318 g~~~~A~~l~~~m~~~g~~p~~~t~~----~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 393 (610)
.+.+.|..+|....... ..+..... .+.......+...++...+...... .++.....-.+....+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHH
Confidence 37899999999887543 22333222 2333344455355666666665432 2343334445555567899999
Q ss_pred HHHHHHhCCCCC-CHHHH-HHHHHHHHhcCchhHHHHHHHHHhc
Q 037713 394 AENLIKAMPFEP-DEPTW-AALLSACKHHRNTEMGTRVANHLLS 435 (610)
Q Consensus 394 A~~~~~~m~~~p-~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~ 435 (610)
|...|+.|+..+ +..-| .=+..+....|+.++|..+|+++.+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999999995433 21222 2244467788999999999999875
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.42 E-value=0.065 Score=41.64 Aligned_cols=71 Identities=14% Similarity=0.048 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhH
Q 037713 377 HYTCLLDLLSRSGHLDEAENLIKAM-----P----FEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILL 447 (610)
Q Consensus 377 ~~~~li~~~~~~g~~~~A~~~~~~m-----~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 447 (610)
-+-.|...+.+.|+++.|...|+.. + -.+...++..|..++.+.|+++.|...++++++++|+++.+...+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 3444555555566666665555543 0 123466778888889999999999999999999999886554333
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.35 Score=41.29 Aligned_cols=129 Identities=16% Similarity=0.167 Sum_probs=84.8
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 037713 281 DMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK 360 (610)
Q Consensus 281 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 360 (610)
+...++|+++.|.++.+.+ .+...|..+......+|+++-|.+.|.+... |..+.--|.-.|+.+.-.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3455788888888887776 4677899999999999999999988887642 2234444555677766655
Q ss_pred HHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 037713 361 LFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHL 433 (610)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 433 (610)
+-+....+ | -++.-...+.-.|+++++.+++.+.+.-|....+ ...+|-.+.|.++.+.+
T Consensus 82 la~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~~------A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYAV------AKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHH------HHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHHH------HHHcCcHHHHHHHHHHh
Confidence 54443332 2 2344445566688999999888887643332221 23466677777777655
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.39 E-value=0.042 Score=45.70 Aligned_cols=71 Identities=15% Similarity=0.087 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcc
Q 037713 373 PSLQHYTCLLDLLSRSG---HLDEAENLIKAM-PFE-P--DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSS 443 (610)
Q Consensus 373 ~~~~~~~~li~~~~~~g---~~~~A~~~~~~m-~~~-p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 443 (610)
++..+.-.+.-++.+.+ +.+++..++++. ... | +...+..|.-+|.+.|++++|.+.++.+++.+|++..+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 44555555555555555 344555555554 112 3 24445667777899999999999999999999987543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.33 E-value=0.22 Score=39.76 Aligned_cols=28 Identities=18% Similarity=0.245 Sum_probs=13.7
Q ss_pred HHHHHHhcCchhHHHHHHHHHhcCCCCC
Q 037713 413 LLSACKHHRNTEMGTRVANHLLSLKPED 440 (610)
Q Consensus 413 ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 440 (610)
|.-++.+.|+++.|.+.++.+++.+|++
T Consensus 80 LAvg~yklg~Y~~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 80 LAVGNYRLKEYEKALKYVRGLLQTEPQN 107 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCCCC
Confidence 3333445555555555555555555544
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=93.84 E-value=0.19 Score=46.72 Aligned_cols=81 Identities=12% Similarity=0.172 Sum_probs=52.9
Q ss_pred HHHHHHHHHhHHhcCCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHh-cCch
Q 037713 356 GKGRKLFKSMIEDYGITPS---LQHYTCLLDLLSR-----SGHLDEAENLIKAM-PFEPD--EPTWAALLSACKH-HRNT 423 (610)
Q Consensus 356 ~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~-----~g~~~~A~~~~~~m-~~~p~--~~~~~~ll~~~~~-~g~~ 423 (610)
.+|...+++..+ +.|+ -..|..|...|.+ -|+.++|.+.|++. .+.|+ ..++......++. .|+.
T Consensus 180 ~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 180 HAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 444445555544 3454 3567777777777 37888888888777 55553 4555556666655 4788
Q ss_pred hHHHHHHHHHhcCCCC
Q 037713 424 EMGTRVANHLLSLKPE 439 (610)
Q Consensus 424 ~~a~~~~~~~~~~~p~ 439 (610)
+++.+.+++++...|.
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 8888888888887765
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=93.50 E-value=0.26 Score=38.12 Aligned_cols=65 Identities=14% Similarity=0.113 Sum_probs=34.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 037713 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYG-----ITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD 406 (610)
Q Consensus 342 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 406 (610)
...+...+.+.|+++.|...|+...+... -.+...++..|..+|.+.|++++|...+++. .+.|+
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 33445555555555555555555544321 1123455666666666666666666666655 34444
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=92.79 E-value=1.9 Score=35.09 Aligned_cols=64 Identities=3% Similarity=-0.005 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHHHHhcC---chhHHHHHHHHHhcCCCC-CCcchHhHHHHhhhhcchhHHHHHHHHHh
Q 037713 405 PDEPTWAALLSACKHHR---NTEMGTRVANHLLSLKPE-DPSSYILLSNVYASAAMWQHVSKVRKLMS 468 (610)
Q Consensus 405 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 468 (610)
|+..+--.+..++.+.. +..+++.+++.+....|. .......|+-++.+.|++++|.+..+.+.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL 104 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 104 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 44444333444444433 334556666666555553 22344455666666666666666666554
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=92.54 E-value=0.63 Score=37.14 Aligned_cols=86 Identities=12% Similarity=0.078 Sum_probs=56.4
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH---HHHHHHHhHHhcCCCC--CHHHHHHHHHHHHhcCCHH
Q 037713 318 GQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGK---GRKLFKSMIEDYGITP--SLQHYTCLLDLLSRSGHLD 392 (610)
Q Consensus 318 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~---a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~ 392 (610)
.....+.+-|.+....|. |+..|-..+..++.++..... |+.+++...+. -.| .....-.|.-++.|.|+++
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~--~~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--GSKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--SCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHhhhHH
Confidence 334455555655555444 677776677778888777665 88888777653 223 2344555667788888888
Q ss_pred HHHHHHHhC-CCCCC
Q 037713 393 EAENLIKAM-PFEPD 406 (610)
Q Consensus 393 ~A~~~~~~m-~~~p~ 406 (610)
+|.+.++.+ .++|+
T Consensus 92 ~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 92 KALKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCCC
Confidence 888888877 55564
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=92.41 E-value=3.6 Score=33.07 Aligned_cols=135 Identities=12% Similarity=0.019 Sum_probs=92.4
Q ss_pred hcCCHHHHHHHHHhcCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 037713 285 KCSDIIAAKDIFGRMRRK-DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFK 363 (610)
Q Consensus 285 ~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 363 (610)
-.|.+++..++..+...+ +..-+|=.|.-....-+-+-..+.++..-. --|. ...|++.....-+-
T Consensus 19 ldG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFDi----------s~C~NlKrVi~C~~ 85 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDL----------DKCQNLKSVVECGV 85 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCG----------GGCSCTHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhh---hcCc----------HhhhcHHHHHHHHH
Confidence 358888888888877653 444555555555555555555555554422 1121 23455555555554
Q ss_pred HhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-C-CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCC
Q 037713 364 SMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKA-M-PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKP 438 (610)
Q Consensus 364 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 438 (610)
.+ ..+.+....-++.+...|+-++-.+++.. . ..+|++.....+..||.+.|+..+|.+++.++-+.+-
T Consensus 86 ~~------n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 86 IN------NTLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HT------TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred Hh------cchHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 43 23456777778888999999999999988 4 5567888999999999999999999999998876653
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.29 E-value=0.73 Score=49.37 Aligned_cols=52 Identities=13% Similarity=0.084 Sum_probs=48.3
Q ss_pred HHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHh
Q 037713 417 CKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMS 468 (610)
Q Consensus 417 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 468 (610)
|...|+++.|+.+.+++...-|.+..+|..|+.+|...|+|+.|.-.++.+.
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 6678999999999999999999999999999999999999999999988874
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.18 E-value=4.9 Score=34.16 Aligned_cols=47 Identities=15% Similarity=0.280 Sum_probs=28.1
Q ss_pred HHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhhC
Q 037713 149 MYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQA 197 (610)
Q Consensus 149 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 197 (610)
...++|+++.|.++.+.+ .+...|..|.....+.|+++-|++.|.+.
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 344666666666665554 34556666666666666666666666553
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=90.38 E-value=12 Score=35.42 Aligned_cols=167 Identities=11% Similarity=-0.008 Sum_probs=96.8
Q ss_pred hHHHHHHHhhcCCChHHHHHHHccCCCCCcchHHHHHHHHHcCCCchHHHHHH----HHhHHCCCCCCChhhHHHHHHHH
Q 037713 40 LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIF----STMLALDKLQPDHFVFASLVKAC 115 (610)
Q Consensus 40 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~~~~~pd~~~~~~ll~~~ 115 (610)
.|.++..-|.+.+++++|.+++-. -...+.+.|+...|-++- +-..+.+ +++|..+...++..+
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~-~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAG-QRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHH
Confidence 355667778889999999987643 123455667776666554 3344455 788888888887777
Q ss_pred hccCCcH-----HHHHHHHHHHhcC--CCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHH
Q 037713 116 GSLGATR-----LGKQVHACFVLSP--FCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188 (610)
Q Consensus 116 ~~~~~~~-----~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~ 188 (610)
.....-+ -..+...+-.+.| -.-|+.....+...|.+.+++.+|+.-|-.-..++...+..++--+.+.+...
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~ 184 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH 184 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc
Confidence 6554321 1122223333333 23467777888888888888888888774222222356655555444443321
Q ss_pred HHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 037713 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMR 229 (610)
Q Consensus 189 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 229 (610)
++- .. ..-.+-.|...++...|..+|....
T Consensus 185 e~d----------lf-iaRaVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 185 TAP----------LY-CARAVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp GHH----------HH-HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHH----------HH-HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 111 11 1122334556667777766655544
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=89.74 E-value=23 Score=38.92 Aligned_cols=285 Identities=12% Similarity=0.036 Sum_probs=136.7
Q ss_pred HHHHHHHHcCCCchHH-HHHH-HHhHHCCCCCCChhhHHHHH-HHHhccCCcHHHHHHHHHHHhcC--CCCChhHHHHHH
Q 037713 73 ASILTAYNQANLPQKT-ISIF-STMLALDKLQPDHFVFASLV-KACGSLGATRLGKQVHACFVLSP--FCDDDVVKSSLV 147 (610)
Q Consensus 73 ~~li~~~~~~g~~~~A-~~~~-~~m~~~~~~~pd~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li 147 (610)
.++.+++...|-..+. +... .++.+. + +..-+.++. -+....|+.+++..++...+..+ -.+.......+.
T Consensus 343 ~~f~Naf~naG~~~D~~l~~~~~Wl~k~---~-~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAlla 418 (963)
T 4ady_A 343 VSVANGFMHAGTTDNSFIKANLPWLGKA---Q-NWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYG 418 (963)
T ss_dssp HHHHHHHHTTTTCCCHHHHHCHHHHHHC---C-THHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchhhhcchhhhhcc---c-hHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHH
Confidence 3556778888765443 2222 233331 2 222333322 23456677777777776655421 122233444455
Q ss_pred HHHHhCCChHHHHHHHHhcC-CCC--------h-h-hHHHHHHHHHhcCC-HHHHHHHHhhC-CCCChh-h-HH--HHHH
Q 037713 148 DMYAKCGLPNNARAVFDSIK-LKN--------S-V-SWTAMLSAYARSGR-KKDAMEIFEQA-PVRNLF-L-WT--ALVS 210 (610)
Q Consensus 148 ~~~~~~g~~~~A~~~~~~m~-~~~--------~-~-~~~~li~~~~~~g~-~~~A~~~~~~~-~~~~~~-~-~~--~li~ 210 (610)
-+.+.+|..+++..++.... ..+ . + .-.++.-|++-.|. -+++...+..+ ...+.. . .. +|..
T Consensus 419 LGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGl 498 (963)
T 4ady_A 419 LGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGL 498 (963)
T ss_dssp HHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 55666676666766655433 222 1 1 11222223332332 12333333332 223321 1 11 2223
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHH--HHhccccHHHHHHHHHHHHHhCCCCchhHH--HHHHHHHHhc
Q 037713 211 GLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVG--ACANFAVLELGKQIHGLVIALGYESCLFIS--NAIVDMYAKC 286 (610)
Q Consensus 211 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~li~~y~~~ 286 (610)
.++..|+.+-...++..+.+.. .+ .+...+.- ++...|+.+.+..+.+.+... ..|..... .++.-+|+..
T Consensus 499 i~vGTgn~~ai~~LL~~~~e~~---~e-~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGT 573 (963)
T 4ady_A 499 CMLGTGKPEAIHDMFTYSQETQ---HG-NITRGLAVGLALINYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGT 573 (963)
T ss_dssp HHTTCCCHHHHHHHHHHHHHCS---CH-HHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTS
T ss_pred hhcccCCHHHHHHHHHHHhccC---cH-HHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCC
Confidence 3456666666666666665532 22 22222333 333567777777776666543 22333222 2344567777
Q ss_pred CCHHHHHHHHHhcCC-C--ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH-HHHHHHH
Q 037713 287 SDIIAAKDIFGRMRR-K--DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLV-GKGRKLF 362 (610)
Q Consensus 287 g~~~~A~~~~~~~~~-~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~-~~a~~~~ 362 (610)
|+.....+++..+.. + ++.....+.-++...|+.+.+.++++.+.+.+ .|....-..+.-+....|.. .++...+
T Consensus 574 Gn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L 652 (963)
T 4ady_A 574 GNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVL 652 (963)
T ss_dssp CCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHH
T ss_pred CCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 887777767776652 2 22222223334444666666667766555543 34443333333344444443 5667777
Q ss_pred HHhHH
Q 037713 363 KSMIE 367 (610)
Q Consensus 363 ~~~~~ 367 (610)
..+..
T Consensus 653 ~~L~~ 657 (963)
T 4ady_A 653 DPLTK 657 (963)
T ss_dssp HHHHT
T ss_pred HHHcc
Confidence 77754
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=89.73 E-value=13 Score=34.88 Aligned_cols=167 Identities=13% Similarity=0.064 Sum_probs=98.5
Q ss_pred hHHHHHHHhhcCCChHHHHHHHccCCCCCcchHHHHHHHHHcCCCchHHHHHH----HHhHHCCCCCCChhhHHHHHHHH
Q 037713 40 LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIF----STMLALDKLQPDHFVFASLVKAC 115 (610)
Q Consensus 40 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~~~~~pd~~~~~~ll~~~ 115 (610)
.|.++..-|.+.+++++|.+++..- ...+.+.|+...|-++- +-..+.+ +++|..+...++..+
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~-~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAE-VKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTT-CCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHH
Confidence 4667778888889999998876541 23455667776666653 3334445 788888777777776
Q ss_pred hccC--Cc---HHHHHHHHHHHhcCC--CCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhc---C
Q 037713 116 GSLG--AT---RLGKQVHACFVLSPF--CDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARS---G 185 (610)
Q Consensus 116 ~~~~--~~---~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~---g 185 (610)
.... .. .-......+-.+.|- ..|+.....+...|.+.|++.+|+.-|-.-...|...+..++--+.+. |
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCC
Confidence 5532 11 222233333333331 236778888888888888888888877533323455565555555444 4
Q ss_pred CHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 037713 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMR 229 (610)
Q Consensus 186 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 229 (610)
...++--..- -.+-.|.-.|+...|..+|....
T Consensus 183 ~~~e~dlf~~-----------RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 183 EDSTVAEFFS-----------RLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp CHHHHHHHHH-----------HHHHHHHHTTBHHHHHHHHHHHH
T ss_pred CcchHHHHHH-----------HHHHHHHHhcCHHHHHHHHHHHH
Confidence 4443321111 12334555667777776666554
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=89.36 E-value=2.2 Score=35.04 Aligned_cols=53 Identities=6% Similarity=-0.038 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCC
Q 037713 389 GHLDEAENLIKAM-PF-EPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDP 441 (610)
Q Consensus 389 g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 441 (610)
++.++|.++|+.+ .+ +-=...|-....--.++|+++.|.+++.+++++.|.+.
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 5666666666655 10 00155665555556678888888888888888887643
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=89.31 E-value=15 Score=34.85 Aligned_cols=167 Identities=11% Similarity=0.084 Sum_probs=99.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHH----HHHHHcCCCCCCHhHHHHHHHHHh
Q 037713 174 WTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSF----IEMRREGVDIVDPLVLSSIVGACA 249 (610)
Q Consensus 174 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~~~~~p~~~t~~~ll~~~~ 249 (610)
|.++..-|.+.+++++|.+++.. -...+.+.|+...|-++- +-..+.+++ +|......++..+.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~-~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQR-VDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCC-CCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHH
Confidence 44566667777888888776653 234455667765555444 445566777 88888777777776
Q ss_pred ccccH-----HHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHH
Q 037713 250 NFAVL-----ELGKQIHGLVIALG--YESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322 (610)
Q Consensus 250 ~~~~~-----~~a~~~~~~~~~~~--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 322 (610)
....- .-.......-.+.| ..-|+.....+...|.+.+++.+|+..|-.-.++.+..+..|+.-+...+...+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e 185 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT 185 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc
Confidence 55431 12223333334444 234677888899999999999999998853222223566555544444333211
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 037713 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE 367 (610)
Q Consensus 323 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 367 (610)
+|...-..++ -|...+++..|..+++...+
T Consensus 186 --------------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 --------------APLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp --------------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 1222222233 34556788888887776655
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=88.91 E-value=12 Score=36.54 Aligned_cols=157 Identities=12% Similarity=0.047 Sum_probs=73.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC--------CChhHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCCHHHH-----
Q 037713 277 NAIVDMYAKCSDIIAAKDIFGRMRR--------KDVVSWTSIIVGTAQH-GQAEETLALYDEMVSAGVKPNEVTF----- 342 (610)
Q Consensus 277 ~~li~~y~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~t~----- 342 (610)
..|...|.+.|+.++..+++..... +....-..++..+... +..+.-.++..+..+-. +-+..+|
T Consensus 23 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr~~l 101 (394)
T 3txn_A 23 LQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3455566666666666666555542 1223344455555442 22233333333332210 0011222
Q ss_pred -HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHhC-----CCCCCHHHHHH
Q 037713 343 -VGLIYACSHVGLVGKGRKLFKSMIEDYGITPS----LQHYTCLLDLLSRSGHLDEAENLIKAM-----PFEPDEPTWAA 412 (610)
Q Consensus 343 -~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m-----~~~p~~~~~~~ 412 (610)
..++..|...|++.+|.+++..+.+...-..| .++|..-+.+|...|++.++...+... .+.|++.+-..
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 13555666666666666666666553221111 244555566666666666666665544 12233322211
Q ss_pred H--HHH--HH-hcCchhHHHHHHHHHh
Q 037713 413 L--LSA--CK-HHRNTEMGTRVANHLL 434 (610)
Q Consensus 413 l--l~~--~~-~~g~~~~a~~~~~~~~ 434 (610)
+ .+| +. ..+++..|...|-+.+
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 1 111 34 5666666666665554
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=88.56 E-value=12 Score=32.69 Aligned_cols=49 Identities=16% Similarity=0.148 Sum_probs=21.4
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCC
Q 037713 138 DDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGR 186 (610)
Q Consensus 138 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~ 186 (610)
+|..+-...+.+..+.|+.+....+.+.+..++...-...+.++.+.|.
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 4444555555555555544333333333334444333344444444443
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=88.14 E-value=17 Score=34.12 Aligned_cols=168 Identities=10% Similarity=0.082 Sum_probs=101.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHH----HHHHHHcCCCCCCHhHHHHHHHHHh
Q 037713 174 WTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYS----FIEMRREGVDIVDPLVLSSIVGACA 249 (610)
Q Consensus 174 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~~~~~p~~~t~~~ll~~~~ 249 (610)
|.++..-|.+.+++++|.+++.. -...+.+.|+...|-++ .+...+.+++ ++......++..+.
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~-~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVK-VDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC-CSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHH
Confidence 45666777777888888777653 23445666776665554 4444556776 78877777777765
Q ss_pred ccc-----cHHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhc---CC
Q 037713 250 NFA-----VLELGKQIHGLVIALGY--ESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQH---GQ 319 (610)
Q Consensus 250 ~~~-----~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~ 319 (610)
... ...-.........+.|- .-++.....+...|.+.|++.+|+..|-.-...|...+..|+.-+... |.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence 532 12223333444444432 247788889999999999999999888733323455555555544443 43
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 037713 320 AEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368 (610)
Q Consensus 320 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 368 (610)
..++-- ..-..++ -|...|++..|..+|+...+.
T Consensus 184 ~~e~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 184 DSTVAE--------------FFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred cchHHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 333211 1111222 344568888888888877654
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=87.13 E-value=2.3 Score=34.95 Aligned_cols=55 Identities=4% Similarity=-0.172 Sum_probs=42.1
Q ss_pred hcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhCCCc
Q 037713 419 HHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVK 473 (610)
Q Consensus 419 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 473 (610)
..+++++|.++|+.++.+...-+..+...+.--.+.|+...|.+++......+.+
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 3479999999999998764333445556666677899999999999988765543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=87.07 E-value=2.4 Score=33.96 Aligned_cols=43 Identities=5% Similarity=0.092 Sum_probs=19.6
Q ss_pred HHHHHHHHHhcCCCC-CCcchHhHHHHhhhhcchhHHHHHHHHH
Q 037713 425 MGTRVANHLLSLKPE-DPSSYILLSNVYASAAMWQHVSKVRKLM 467 (610)
Q Consensus 425 ~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m 467 (610)
+|+.+++.+.+.+|. .......|+-++.+.|++++|.+..+.+
T Consensus 61 ~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~l 104 (134)
T 3o48_A 61 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTL 104 (134)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 444444444444432 1233344444555555555555554444
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.62 E-value=4 Score=34.19 Aligned_cols=27 Identities=11% Similarity=0.122 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 037713 376 QHYTCLLDLLSRSGHLDEAENLIKAMP 402 (610)
Q Consensus 376 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 402 (610)
+.---+..+|.+.|++++|+.+++.+|
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 333335555556666666666666553
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=86.26 E-value=2.9 Score=31.54 Aligned_cols=64 Identities=13% Similarity=0.203 Sum_probs=50.9
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 037713 319 QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDL 384 (610)
Q Consensus 319 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 384 (610)
+.-+..+-+..+....+.|+.....+.++||-+.+++..|.++|+.++.+. .+...+|..+++-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHHHH
Confidence 344667777777778889999999999999999999999999999988753 3445567777653
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=86.02 E-value=16 Score=31.51 Aligned_cols=117 Identities=14% Similarity=0.128 Sum_probs=50.2
Q ss_pred HccCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCCh
Q 037713 61 LEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD 140 (610)
Q Consensus 61 f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 140 (610)
++.+..+|...-...+.++.+.+.. .+...+.++.. .+|...-...+.++...++.+....+. .++. .++.
T Consensus 20 i~~L~~~~~~vr~~A~~~L~~~~~~-~~~~~L~~~l~----~~~~~vr~~a~~~L~~~~~~~~~~~L~-~~l~---d~~~ 90 (201)
T 3ltj_A 20 IKNLQDDSYYVRRAAAYALGKIGDE-RAVEPLIKALK----DEDAWVRRAAADALGQIGDERAVEPLI-KALK---DEDG 90 (201)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHCCG-GGHHHHHHHTT----CSSHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---CSSH
T ss_pred HHHhcCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHc----CCCHHHHHHHHHHHHhhCCHHHHHHHH-HHHc---CCCH
Confidence 3334444444444444444444442 22333333332 234444444445555544433222222 2222 3455
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCC
Q 037713 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGR 186 (610)
Q Consensus 141 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~ 186 (610)
.+-...+.++.+.|+.+....+.+.+..++...-...+.++.+.+.
T Consensus 91 ~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 91 WVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGD 136 (201)
T ss_dssp HHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 5555555555555554444444444444444444444444444443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.95 E-value=3.1 Score=44.52 Aligned_cols=52 Identities=13% Similarity=0.126 Sum_probs=40.1
Q ss_pred HHHHHhCCChHHHHHHHHhcC--CC-ChhhHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037713 147 VDMYAKCGLPNNARAVFDSIK--LK-NSVSWTAMLSAYARSGRKKDAMEIFEQAP 198 (610)
Q Consensus 147 i~~~~~~g~~~~A~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 198 (610)
.+.+...|+++-|+++-++.. .| +-.+|..|..+|.+.|+++.|+-.++.+|
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 445667788888888877765 34 56788888888888888888888888876
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.34 E-value=37 Score=33.92 Aligned_cols=186 Identities=11% Similarity=0.109 Sum_probs=119.7
Q ss_pred CCChHHHHHHHHHHHHcC-----CCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHh-CCCCchh--HHHHHHHHHHhc
Q 037713 215 SRNEIDAFYSFIEMRREG-----VDIVDPLVLSSIVGACANFAVLELGKQIHGLVIAL-GYESCLF--ISNAIVDMYAKC 286 (610)
Q Consensus 215 ~g~~~~A~~~~~~m~~~~-----~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~--~~~~li~~y~~~ 286 (610)
.|++++|++.+..+.+.. .. ........++..|...++++...+....+.+. |..+... ..+.+++.....
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~-s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLA-SSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTT-TCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchh-hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC
Confidence 378999999887776532 22 45667888999999999999887777666543 3222211 122233333333
Q ss_pred CC--HHHHHHHHHhcCCC----------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHH
Q 037713 287 SD--IIAAKDIFGRMRRK----------DVVSWTSIIVGTAQHGQAEETLALYDEMVSA--GVKPN---EVTFVGLIYAC 349 (610)
Q Consensus 287 g~--~~~A~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~---~~t~~~ll~a~ 349 (610)
.. .+.-..+.+....- .......|...|-..|++.+|..++.++... |..+. ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 32 23333444444321 1123456778888999999999999998653 22222 23566677889
Q ss_pred hccCCHHHHHHHHHHhHHh-cCC--CCC--HHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037713 350 SHVGLVGKGRKLFKSMIED-YGI--TPS--LQHYTCLLDLLSRSGHLDEAENLIKAM 401 (610)
Q Consensus 350 ~~~g~~~~a~~~~~~~~~~-~~~--~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m 401 (610)
...+++.+|..++.++... ... .|+ ...|.+++..+...+++.+|...|.+.
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 9999999999999887432 122 222 256788888888999999988776554
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=82.95 E-value=42 Score=38.31 Aligned_cols=164 Identities=9% Similarity=0.012 Sum_probs=85.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccH
Q 037713 175 TAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVL 254 (610)
Q Consensus 175 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~ 254 (610)
..++..+.+.+..+.+.++..-.+. +..+--.+..+|...|++++|.+.|++.-. |+. .+.... ...
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~-~~~~l~----------~~~ 882 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLY-SHTSQF----------AVL 882 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCT-TCCCSC----------SSH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhc-ccchhh----------hhh
Confidence 3456666777777777766555443 333333455667778888888888866421 111 110000 000
Q ss_pred HHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCCHHHHHHHHHhc----CCCC----hhHHHHHHHHHHhcCChHHHH
Q 037713 255 ELGKQIHGLVIALG--YESCLFISNAIVDMYAKCSDIIAAKDIFGRM----RRKD----VVSWTSIIVGTAQHGQAEETL 324 (610)
Q Consensus 255 ~~a~~~~~~~~~~~--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~----~~~~----~~~~~~li~~~~~~g~~~~A~ 324 (610)
.. ...+.... ...-..-|.-++..+.+.|.++.+.++-... ...+ ...|..+..++...|++++|.
T Consensus 883 ~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay 958 (1139)
T 4fhn_B 883 RE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAH 958 (1139)
T ss_dssp HH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGG
T ss_pred cc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHH
Confidence 00 00001100 0111223444555555555555554443222 1222 125788888888889999888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 037713 325 ALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGK 357 (610)
Q Consensus 325 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 357 (610)
..+-.+.....+ ...+..|+...+..|..++
T Consensus 959 ~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 959 VALMVLSTTPLK--KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHSSSC--HHHHHHHHHHHHHHCCHHH
T ss_pred HHHHhCCCHHHH--HHHHHHHHHHHHhCCChhh
Confidence 888877765443 4456666666666665543
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=82.07 E-value=14 Score=27.74 Aligned_cols=71 Identities=11% Similarity=0.049 Sum_probs=34.2
Q ss_pred CcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 037713 120 ATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIF 194 (610)
Q Consensus 120 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~ 194 (610)
.-++|..+-+.+...|- ...+--.-+..+...|++++|..+.+.+.-||.+.|-+|... +.|..+++..-+
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL 92 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRL 92 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHH
Confidence 34555555555555442 222222223344555666555555555555555555554432 344444444444
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=81.68 E-value=8.7 Score=28.98 Aligned_cols=62 Identities=11% Similarity=0.173 Sum_probs=40.2
Q ss_pred chHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 037713 85 PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVD 148 (610)
Q Consensus 85 ~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 148 (610)
.-+..+-++.+...+ +.|++....+.+++|.+.+++..|.++++-+...- .+...+|..+++
T Consensus 26 ~~e~rrglN~l~~~D-lVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYD-LVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSS-BCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccc-cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 335556666666666 77788888888888888888888888777665432 223445555543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=81.59 E-value=7.9 Score=38.04 Aligned_cols=56 Identities=13% Similarity=0.068 Sum_probs=31.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 037713 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI 366 (610)
Q Consensus 310 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 366 (610)
++..+...|++++|+..++.+.... +-+...+..++.++...|+..+|.+.|+...
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555666666666655555431 2255556666666666666666666655543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.36 E-value=7.6 Score=32.48 Aligned_cols=20 Identities=5% Similarity=0.049 Sum_probs=10.6
Q ss_pred HHHHHHhcCchhHHHHHHHH
Q 037713 413 LLSACKHHRNTEMGTRVANH 432 (610)
Q Consensus 413 ll~~~~~~g~~~~a~~~~~~ 432 (610)
+..+|.+.++.++|+.+++.
T Consensus 128 ia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 128 LAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHCCHHHHHHHHhc
Confidence 44445555555555555543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=81.35 E-value=2.5 Score=41.61 Aligned_cols=66 Identities=11% Similarity=0.010 Sum_probs=47.7
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhh-----CCCccCC
Q 037713 411 AALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSV-----MEVKKEP 476 (610)
Q Consensus 411 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~ 476 (610)
..++.++...|+++++...++.++..+|-+...|..|+.+|.+.|+..+|.+.|+..++ .|+.|.|
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~ 245 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 245 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 34555666777788888777777778887777788888888888888888777776543 4665544
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=80.52 E-value=13 Score=27.79 Aligned_cols=50 Identities=18% Similarity=0.163 Sum_probs=26.5
Q ss_pred HHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 037713 181 YARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREG 232 (610)
Q Consensus 181 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 232 (610)
+...|++++|..+.+....||+.+|-+|-. .+.|..+++...+.++...|
T Consensus 49 LmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 344555555555555555555555555433 34455555555555555544
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=80.07 E-value=29 Score=30.08 Aligned_cols=46 Identities=15% Similarity=0.148 Sum_probs=19.5
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHh
Q 037713 138 DDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYAR 183 (610)
Q Consensus 138 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~ 183 (610)
+|..+-...+..+.+.|..+....+.+.+..+|...-...+.++.+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~ 76 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQ 76 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 4445555555555555543333333333333333333333333333
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 610 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.91 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.89 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.55 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.51 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.12 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.07 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.0 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.99 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.99 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.97 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.95 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.92 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.87 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.86 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.64 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.57 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.48 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.48 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.44 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.37 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.33 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.32 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.31 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.28 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.26 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.25 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.17 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.05 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.99 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.98 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.98 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.97 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.89 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.85 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.81 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.79 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.72 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.66 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.63 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.62 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.61 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.61 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.59 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.53 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.45 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.31 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.28 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.21 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.2 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.18 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.13 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.06 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.77 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.15 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.08 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.76 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 93.07 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 91.98 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 91.88 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 89.82 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 88.93 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 86.69 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 85.53 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 81.03 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=3.3e-21 Score=192.89 Aligned_cols=370 Identities=11% Similarity=0.045 Sum_probs=276.0
Q ss_pred HHHHcCCCchHHHHHHHHhHHCCCCCC-ChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCC
Q 037713 77 TAYNQANLPQKTISIFSTMLALDKLQP-DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGL 155 (610)
Q Consensus 77 ~~~~~~g~~~~A~~~~~~m~~~~~~~p-d~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 155 (610)
..+.+.|++++|++.|+++.+. .| +...+..+..++...|++++|...++.+++.. |.+..++..+..+|.+.|+
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQ---EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcc
Confidence 3445566666666666666653 23 34455555566666666777777666666654 4455566666666777777
Q ss_pred hHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCCHHHHHHHHhh---CCCCChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 037713 156 PNNARAVFDSIKLK---NSVSWTAMLSAYARSGRKKDAMEIFEQ---APVRNLFLWTALVSGLVQSRNEIDAFYSFIEMR 229 (610)
Q Consensus 156 ~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 229 (610)
+++|...+...... +...+..........+....+...... ........+..........+....+...+....
T Consensus 83 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhh
Confidence 77777666665522 223333333333333333333333222 123344555566667777788888888888777
Q ss_pred HcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhH
Q 037713 230 REGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVS 306 (610)
Q Consensus 230 ~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~ 306 (610)
.... .+...+..+...+...+..+.|...+..+.+.. +.+...+..+...|...|++++|...|++... .+...
T Consensus 163 ~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 239 (388)
T d1w3ba_ 163 ETQP--NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV 239 (388)
T ss_dssp HHCT--TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHH
T ss_pred ccCc--chhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHH
Confidence 6652 467777788888888899999999988888764 34567888899999999999999999987753 46778
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHH
Q 037713 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLS 386 (610)
Q Consensus 307 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 386 (610)
|..+...+.+.|++++|+..|++..+... -+..++..+..++...|++++|.+.++..... .+.+...+..+...|.
T Consensus 240 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~ 316 (388)
T d1w3ba_ 240 HGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--CCccchhhhHHHHHHH
Confidence 88899999999999999999999988632 25778889999999999999999999998774 5667788999999999
Q ss_pred hcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcc
Q 037713 387 RSGHLDEAENLIKAM-PFEPD-EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAM 456 (610)
Q Consensus 387 ~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 456 (610)
+.|++++|.+.|++. ...|+ ..+|..+...+...|++++|+..++++++++|+++.+|..|+.+|.+.|+
T Consensus 317 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 999999999999987 66665 67788899999999999999999999999999999999999999988775
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=1.8e-19 Score=179.94 Aligned_cols=351 Identities=14% Similarity=0.074 Sum_probs=292.5
Q ss_pred HHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCC---CChhhHHHHHHHHHhcCCHH
Q 037713 112 VKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKL---KNSVSWTAMLSAYARSGRKK 188 (610)
Q Consensus 112 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~ 188 (610)
...+.+.|++++|.+.++.+++.. |.+..++..+..+|.+.|++++|...|++..+ .+..+|..+...|.+.|+++
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~ 84 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccc
Confidence 345667899999999999999875 56788899999999999999999999998762 36788999999999999999
Q ss_pred HHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHH
Q 037713 189 DAMEIFEQAPV---RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVI 265 (610)
Q Consensus 189 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 265 (610)
+|...+..... .+...+..........+....+............ ................+....+........
T Consensus 85 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
T d1w3ba_ 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP--DLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT--TCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccccccchhhhhHHHHHHhh
Confidence 99999987653 2444555566666667777777777766666553 444555555666667777888887777777
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 037713 266 ALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTF 342 (610)
Q Consensus 266 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 342 (610)
... +.+...+..+...+...|++++|...+++..+ .+..+|..+...+...|++++|+..|++...... .+...+
T Consensus 163 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~ 240 (388)
T d1w3ba_ 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVH 240 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHH
T ss_pred ccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhh-hHHHHH
Confidence 664 44567888899999999999999999987753 4677899999999999999999999999988643 467788
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhc
Q 037713 343 VGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM--PFEPDEPTWAALLSACKHH 420 (610)
Q Consensus 343 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~ 420 (610)
..+..++.+.|++++|...|+++.+. .+.+...|..+...|.+.|++++|.+.++.. ..+.+...+..+...+...
T Consensus 241 ~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 318 (388)
T d1w3ba_ 241 GNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHC
Confidence 88999999999999999999999873 3445788999999999999999999999887 3345678888899999999
Q ss_pred CchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhh
Q 037713 421 RNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 421 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 469 (610)
|++++|+..++++++.+|+++.++..++.+|.+.|++++|.+.++...+
T Consensus 319 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 367 (388)
T d1w3ba_ 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998764
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=4.5e-13 Score=129.80 Aligned_cols=232 Identities=12% Similarity=-0.017 Sum_probs=152.5
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 037713 209 VSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSD 288 (610)
Q Consensus 209 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 288 (610)
...+.+.|++++|+..|+++.+.. |.+...+..+..++...|+++.|...+..+.+.. +.+...+..+...|...|+
T Consensus 26 g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 26 GLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccc
Confidence 334455555555555555555543 1244455555555555555555555555555543 2234455555555666666
Q ss_pred HHHHHHHHHhcCC--C----------------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHH
Q 037713 289 IIAAKDIFGRMRR--K----------------DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGV-KPNEVTFVGLIYAC 349 (610)
Q Consensus 289 ~~~A~~~~~~~~~--~----------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~ 349 (610)
+++|.+.+++... | +.......+..+...+...+|.+.|.+..+... .++...+..+...+
T Consensus 103 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~ 182 (323)
T d1fcha_ 103 QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLF 182 (323)
T ss_dssp HHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHH
T ss_pred ccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence 6666655555431 1 011111222334455677888999888776432 34567788888999
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHH
Q 037713 350 SHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGT 427 (610)
Q Consensus 350 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 427 (610)
...|++++|...|+..... .+-+...|..+...|.+.|++++|.+.|++. ...| +...|..+..+|...|++++|+
T Consensus 183 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~ 260 (323)
T d1fcha_ 183 NLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAV 260 (323)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999998874 3345788999999999999999999999887 4455 4677889999999999999999
Q ss_pred HHHHHHhcCCCCCCcchH
Q 037713 428 RVANHLLSLKPEDPSSYI 445 (610)
Q Consensus 428 ~~~~~~~~~~p~~~~~~~ 445 (610)
..|+++++++|++...+.
T Consensus 261 ~~~~~al~l~p~~~~~~~ 278 (323)
T d1fcha_ 261 EHFLEALNMQRKSRGPRG 278 (323)
T ss_dssp HHHHHHHHHHHTC-----
T ss_pred HHHHHHHHhCCcChhhhh
Confidence 999999998887765443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=7.8e-13 Score=128.07 Aligned_cols=224 Identities=12% Similarity=0.018 Sum_probs=185.9
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCC
Q 037713 243 SIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQ 319 (610)
Q Consensus 243 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 319 (610)
.....+.+.|+++.|...++.+++.. +.+...+..+..+|...|++++|...|.+..+ .+...|..+...|...|+
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccccccc
Confidence 34556788999999999999999875 44678899999999999999999999998763 467889999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHH----------------HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 037713 320 AEETLALYDEMVSAGVKPNEV----------------TFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLD 383 (610)
Q Consensus 320 ~~~A~~l~~~m~~~g~~p~~~----------------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 383 (610)
+++|.+.+++..... |+.. .....+..+...+...++...+....+...-.++..++..+..
T Consensus 103 ~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~ 180 (323)
T d1fcha_ 103 QRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV 180 (323)
T ss_dssp HHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHH
T ss_pred ccccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 999999999987642 2211 1111222334456678888898888775444556788899999
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHH
Q 037713 384 LLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461 (610)
Q Consensus 384 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 461 (610)
.+.+.|++++|...|++. ...| +...|..+...+...|++++|.+.++++++++|+++.++..++.+|.+.|++++|.
T Consensus 181 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~ 260 (323)
T d1fcha_ 181 LFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAV 260 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999987 4444 47788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhh
Q 037713 462 KVRKLMSV 469 (610)
Q Consensus 462 ~~~~~m~~ 469 (610)
+.++...+
T Consensus 261 ~~~~~al~ 268 (323)
T d1fcha_ 261 EHFLEALN 268 (323)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988765
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.12 E-value=1e-08 Score=99.28 Aligned_cols=260 Identities=11% Similarity=-0.053 Sum_probs=175.3
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCC----HhHHHHHHHHHhccccHHHHHHHHHHHHHhCC--C---CchhHHHHH
Q 037713 209 VSGLVQSRNEIDAFYSFIEMRREGVDIVD----PLVLSSIVGACANFAVLELGKQIHGLVIALGY--E---SCLFISNAI 279 (610)
Q Consensus 209 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~---~~~~~~~~l 279 (610)
...+...|++++|++++++..+.... .+ ...+..+..++...|++++|...+..+.+... . .....+..+
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~-~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPP-GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 97 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcC-CCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 34456667777777777766654321 11 12344455666667777777777766655311 1 112345556
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC-------C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCCCHHHHHH
Q 037713 280 VDMYAKCSDIIAAKDIFGRMRR-------K----DVVSWTSIIVGTAQHGQAEETLALYDEMVSAG----VKPNEVTFVG 344 (610)
Q Consensus 280 i~~y~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~~~t~~~ 344 (610)
...|...|++..|...+..... + ....+..+...+...|+++.+...+....... ......++..
T Consensus 98 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (366)
T d1hz4a_ 98 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 177 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 6777788888887777765431 1 12345566777888999999999988877632 2223455666
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-----CHHHHHHH
Q 037713 345 LIYACSHVGLVGKGRKLFKSMIEDYGITPS-----LQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-----DEPTWAAL 413 (610)
Q Consensus 345 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-----~~~~~~~l 413 (610)
....+...+...++...+...........+ ...+..+...+...|++++|...+++. ...| ....+..+
T Consensus 178 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 257 (366)
T d1hz4a_ 178 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 257 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 667778888998888888776553222221 234566777888999999999999887 2222 24456667
Q ss_pred HHHHHhcCchhHHHHHHHHHhc------CCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhh
Q 037713 414 LSACKHHRNTEMGTRVANHLLS------LKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 414 l~~~~~~g~~~~a~~~~~~~~~------~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 469 (610)
..++...|++++|...+++++. ..|....++..++.+|.+.|++++|.+.++...+
T Consensus 258 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 258 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7889999999999999998873 3355566888999999999999999999887643
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.07 E-value=1.5e-08 Score=96.49 Aligned_cols=187 Identities=11% Similarity=0.096 Sum_probs=148.5
Q ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C-hhHHHHHHHHHHhcCChHHHHHHH
Q 037713 252 AVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR--K-D-VVSWTSIIVGTAQHGQAEETLALY 327 (610)
Q Consensus 252 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~-~~~~~~li~~~~~~g~~~~A~~l~ 327 (610)
+..+.+..+++.+++...+.+...+...+..+.+.|+++.|..+|+++.+ | + ...|...+....+.|+.++|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34678888999888766666778888899999999999999999998754 2 3 347899999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHH-HHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC----C
Q 037713 328 DEMVSAGVKPNEVTFVGLIY-ACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM----P 402 (610)
Q Consensus 328 ~~m~~~g~~p~~~t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~ 402 (610)
+++.+.+.. +...|..... -+...|+.+.|..+|+.+.+. .+.+...|...++.+.+.|++++|..+|++. +
T Consensus 158 ~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 158 KKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 999876543 3333433332 234568899999999999885 4556788999999999999999999999986 3
Q ss_pred CCCC--HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCC
Q 037713 403 FEPD--EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDP 441 (610)
Q Consensus 403 ~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 441 (610)
..|+ ...|...+.--..+|+.+.+..+++++.+..|.+.
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence 4443 45788888888889999999999999988887654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.00 E-value=5.6e-09 Score=96.62 Aligned_cols=200 Identities=7% Similarity=-0.060 Sum_probs=117.4
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHh
Q 037713 240 VLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQ 316 (610)
Q Consensus 240 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 316 (610)
++..+..++.+.|+++.|...++.+++.. +.+..+++.+..+|.+.|++++|...|++..+ .+..+|..+...|..
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 117 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 117 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHH
Confidence 44444555566666666666666666553 33566677777777777777777777777653 245677777788888
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcC----CHH
Q 037713 317 HGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSG----HLD 392 (610)
Q Consensus 317 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~ 392 (610)
.|++++|.+.|++..+... .+......+..++.+.+..+....+...... ..++...++ ++..+.... ..+
T Consensus 118 ~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~ 192 (259)
T d1xnfa_ 118 GGRDKLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK---SDKEQWGWN-IVEFYLGNISEQTLME 192 (259)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---SCCCSTHHH-HHHHHTTSSCHHHHHH
T ss_pred HhhHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc---cchhhhhhh-HHHHHHHHHHHHHHHH
Confidence 8888888888888776532 2344444444444555554444444444433 122222222 222222111 122
Q ss_pred HHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchH
Q 037713 393 EAENLIKAM-PFEPD-EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYI 445 (610)
Q Consensus 393 ~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 445 (610)
.+...+... ...|+ ..+|..+...+...|++++|...|++++..+|++...|.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 247 (259)
T d1xnfa_ 193 RLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR 247 (259)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred HHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 222222111 11222 345667788899999999999999999999998754443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.99 E-value=5.4e-10 Score=108.22 Aligned_cols=229 Identities=7% Similarity=-0.093 Sum_probs=165.4
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccc--cHHHHHHHHHHHHHhCCCCchhHH-HHHHHHHHhcCCHH
Q 037713 214 QSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFA--VLELGKQIHGLVIALGYESCLFIS-NAIVDMYAKCSDII 290 (610)
Q Consensus 214 ~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~y~~~g~~~ 290 (610)
..|.+++|+.+++...+... .+...+..+..++...+ +++.+...+..+.+.... +...+ ......+...|..+
T Consensus 85 ~~~~~~~al~~~~~~l~~~p--k~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~ 161 (334)
T d1dcea1 85 SAALVKAELGFLESCLRVNP--KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPA 161 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHH
T ss_pred HHHHHHHHHHHHHHHHHhCC--CcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccH
Confidence 34456778888888777653 45556666655555544 477888888888776433 33333 44557777889999
Q ss_pred HHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 037713 291 AAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE 367 (610)
Q Consensus 291 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 367 (610)
+|+..++...+ .+..+|+.+...+.+.|++++|...+++.... .|+. ..+...+...+..+++...+.....
T Consensus 162 ~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~ 236 (334)
T d1dcea1 162 EELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLL 236 (334)
T ss_dssp HHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHH
Confidence 99999998875 36788999999999999998887666554432 2222 1233334555667778888877765
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchH
Q 037713 368 DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD-EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYI 445 (610)
Q Consensus 368 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 445 (610)
.-+++...+..+...+...|+.++|...+.+. ...|+ ..+|..+...+...|+.++|...++++++++|.+...|.
T Consensus 237 --~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~ 314 (334)
T d1dcea1 237 --GRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 314 (334)
T ss_dssp --SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred --hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHH
Confidence 34455566777788888899999999988877 55564 566778888899999999999999999999998877777
Q ss_pred hHHHHhh
Q 037713 446 LLSNVYA 452 (610)
Q Consensus 446 ~l~~~~~ 452 (610)
.|...+.
T Consensus 315 ~L~~~~~ 321 (334)
T d1dcea1 315 DLRSKFL 321 (334)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7776665
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.99 E-value=2.8e-08 Score=94.72 Aligned_cols=190 Identities=12% Similarity=0.064 Sum_probs=110.2
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccc-cHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 037713 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFA-VLELGKQIHGLVIALGYESCLFISNAIVD 281 (610)
Q Consensus 203 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 281 (610)
..|+.+...+.+.+.+++|+++++++.+.. |-+...|.....++...+ ++++|...++.+++.. +.+..+|+.+..
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln--P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~ 120 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhH
Confidence 355666667778888888888888888866 245556666666665554 3666666666666654 334556666666
Q ss_pred HHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC----
Q 037713 282 MYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGL---- 354 (610)
Q Consensus 282 ~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~---- 354 (610)
.+.+.|++++|+..|+++.+ .+..+|+.+...+.+.|++++|++.|+++++.... +...|+.+...+.+.+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchh
Confidence 66666666666666666653 35566666666666666666666666666664322 44455544444443333
Q ss_pred --HHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037713 355 --VGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIK 399 (610)
Q Consensus 355 --~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 399 (610)
+++|.+.+..+.+. .+.+...|..+...+...| .+++.+.++
T Consensus 200 ~~~~~ai~~~~~al~~--~P~~~~~~~~l~~ll~~~~-~~~~~~~~~ 243 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRG-LSKYPNLLN 243 (315)
T ss_dssp HHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTC-GGGCHHHHH
T ss_pred hhhHHhHHHHHHHHHh--CCCchHHHHHHHHHHHhcC-hHHHHHHHH
Confidence 45555555555542 2234445554444443332 334444333
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=1.9e-08 Score=95.96 Aligned_cols=212 Identities=13% Similarity=0.148 Sum_probs=166.7
Q ss_pred HhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-CHHHHHHHHHhcCC---CChhHHHHHHHH
Q 037713 238 PLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS-DIIAAKDIFGRMRR---KDVVSWTSIIVG 313 (610)
Q Consensus 238 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~ 313 (610)
...+..+...+.+.+..++|.+.++.+++.. |.+...|+....++...| ++++|...++...+ .+..+|+.+...
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHH
Confidence 3455566667778889999999999999986 556778899998988876 59999999998763 478899999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCC---
Q 037713 314 TAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGH--- 390 (610)
Q Consensus 314 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--- 390 (610)
+.+.|++++|++.++++.+...+ +...|..+...+.+.|++++|.+.++.+.+. -+.+...|+.+..++.+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~--~p~n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--CCccHHHHHHHHHHHHHccccch
Confidence 99999999999999999986433 6889999999999999999999999999884 33456788887777777665
Q ss_pred ---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCc--chHhHHHHhhhh
Q 037713 391 ---LDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS--SYILLSNVYASA 454 (610)
Q Consensus 391 ---~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~--~~~~l~~~~~~~ 454 (610)
+++|.+.+.+. ...| +...|..+...+.. ...+++...++.+.++.|+... .+..++.+|...
T Consensus 199 ~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~ 268 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDM 268 (315)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHH
Confidence 57888888776 4455 56777777666554 4468888999999888876443 445666666543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.95 E-value=3e-07 Score=88.46 Aligned_cols=93 Identities=9% Similarity=0.090 Sum_probs=40.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHhHHh---cCCCCC-HHHHHH
Q 037713 308 TSIIVGTAQHGQAEETLALYDEMVSAGVKP---NEVTFVGLIYACSHVGLVGKGRKLFKSMIED---YGITPS-LQHYTC 380 (610)
Q Consensus 308 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~~~~-~~~~~~ 380 (610)
..+...+...|+.++|...+++........ ...++..+..++...|++++|...++..... .+..|+ ...+..
T Consensus 217 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 296 (366)
T d1hz4a_ 217 KVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLL 296 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHH
Confidence 333444444555555555544433221111 1223333444455555555555555444321 122222 234444
Q ss_pred HHHHHHhcCCHHHHHHHHHh
Q 037713 381 LLDLLSRSGHLDEAENLIKA 400 (610)
Q Consensus 381 li~~~~~~g~~~~A~~~~~~ 400 (610)
+..+|.+.|++++|.+.+++
T Consensus 297 la~~~~~~g~~~~A~~~l~~ 316 (366)
T d1hz4a_ 297 LNQLYWQAGRKSDAQRVLLD 316 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 55555555555555555543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.92 E-value=6.1e-09 Score=96.35 Aligned_cols=194 Identities=11% Similarity=0.014 Sum_probs=138.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037713 273 LFISNAIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYAC 349 (610)
Q Consensus 273 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 349 (610)
..++..+..+|.+.|++++|...|++..+ .++.+|+.+..+|.+.|++++|++.|++..+.... +..++..+..++
T Consensus 37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~ 115 (259)
T d1xnfa_ 37 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIAL 115 (259)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHHH
Confidence 34667788999999999999999998863 47889999999999999999999999999986432 466788899999
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH----hcCchh
Q 037713 350 SHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPDEPTWAALLSACK----HHRNTE 424 (610)
Q Consensus 350 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~----~~g~~~ 424 (610)
...|++++|...|+...+. .+.+......+...+.+.+..+.+..+.... ...++...+. ++..+. ..+..+
T Consensus 116 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 192 (259)
T d1xnfa_ 116 YYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLME 192 (259)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhh-HHHHHHHHHHHHHHHH
Confidence 9999999999999999874 2334555555555566666665555554443 1122222222 222221 122233
Q ss_pred HHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhC
Q 037713 425 MGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 425 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 470 (610)
.+...+.......|....+|..|+.+|...|++++|.+.++...+.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 193 RLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 3333333334445666678889999999999999999999987653
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.87 E-value=1.7e-07 Score=88.95 Aligned_cols=182 Identities=12% Similarity=0.087 Sum_probs=144.1
Q ss_pred CCHHHHHHHHHhcC----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 037713 287 SDIIAAKDIFGRMR----RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF 362 (610)
Q Consensus 287 g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 362 (610)
+..++|..+|++.. ..+...|...+..+...|+.++|..+|+++.+.........|...+..+.+.|+++.|+++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 44678888888754 24667889999999999999999999999987644434567889999999999999999999
Q ss_pred HHhHHhcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCC
Q 037713 363 KSMIEDYGITPSLQHYTCLLDL-LSRSGHLDEAENLIKAM--PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439 (610)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 439 (610)
+.+.+. .+.+...|...... +...|+.+.|..+|+.+ ....+...|...+..+...|+++.|..+|++++...|.
T Consensus 158 ~~al~~--~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 158 KKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHHh--CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 999773 33445555555544 34468999999999988 22335788999999999999999999999999988776
Q ss_pred CCc----chHhHHHHhhhhcchhHHHHHHHHHhhC
Q 037713 440 DPS----SYILLSNVYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 440 ~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 470 (610)
++. .|...+..-...|+.+.+.++.+++.+.
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 544 4556666667889999999999988653
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.86 E-value=7e-09 Score=100.13 Aligned_cols=253 Identities=7% Similarity=-0.058 Sum_probs=181.3
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCCH-hHHHHH---HHH-------HhccccHHHHHHHHHHHHHhCCCCchhH
Q 037713 207 ALVSGLVQSRNEIDAFYSFIEMRREGVDIVDP-LVLSSI---VGA-------CANFAVLELGKQIHGLVIALGYESCLFI 275 (610)
Q Consensus 207 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-~t~~~l---l~~-------~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 275 (610)
.++......+..++|++++.+..+.. |+. ..|+.. +.. ....+.++.+..+++.+.+.. +.+...
T Consensus 34 ~~~~~~~~~~~~~~al~~~~~~l~~~---P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~ 109 (334)
T d1dcea1 34 AVFQKRQAGELDESVLELTSQILGAN---PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGT 109 (334)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHH
Confidence 33333344445689999999998876 443 333322 222 233456788888888888765 446667
Q ss_pred HHHHHHHHHhcC--CHHHHHHHHHhcCC---CChhHHHHH-HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037713 276 SNAIVDMYAKCS--DIIAAKDIFGRMRR---KDVVSWTSI-IVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYAC 349 (610)
Q Consensus 276 ~~~li~~y~~~g--~~~~A~~~~~~~~~---~~~~~~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 349 (610)
+..+...+...+ ++++|...++++.+ ++...|... ...+...|.+++|+..+++..+.... +...|..+..++
T Consensus 110 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~~ 188 (334)
T d1dcea1 110 WHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLL 188 (334)
T ss_dssp HHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHH
T ss_pred HHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHHH
Confidence 777777777665 48899999988753 456666544 46677789999999999998876443 677888888889
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCchhHHH
Q 037713 350 SHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM--PFEPDEPTWAALLSACKHHRNTEMGT 427 (610)
Q Consensus 350 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~ 427 (610)
...|++++|...+....+. .|+ ...+...+...+..+++...+... ...++...+..+...+...++.++|.
T Consensus 189 ~~~~~~~~A~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~ 262 (334)
T d1dcea1 189 PQLHPQPDSGPQGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESC 262 (334)
T ss_dssp HHHSCCCCSSSCCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHhHHh---HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHH
Confidence 9999888876666554442 111 122334455667777777776665 22334555666777788889999999
Q ss_pred HHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhC
Q 037713 428 RVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 428 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 470 (610)
..+.+.++.+|.+..++..++.+|.+.|++++|.+.++...+.
T Consensus 263 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 263 KELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988653
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.64 E-value=9.2e-07 Score=77.02 Aligned_cols=141 Identities=11% Similarity=-0.035 Sum_probs=97.9
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHH
Q 037713 280 VDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGR 359 (610)
Q Consensus 280 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 359 (610)
...+...|+++.|++.|.++..++..+|..+...|...|++++|++.|++.++.... +...|..+..++.+.|++++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccHHHHH
Confidence 445677889999999999888888888888999999999999999999998876432 5778888888888999999998
Q ss_pred HHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCC
Q 037713 360 KLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPD-EPTWAALLSACKHHRNTEMGTRVANHLLSLKP 438 (610)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 438 (610)
..|++.... .+++... .|...| +..+++ ..++..+..++...|++++|.+.+++++++.|
T Consensus 91 ~~~~kAl~~--~~~n~~~------~~~~~~-----------~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~ 151 (192)
T d1hh8a_ 91 KDLKEALIQ--LRGNQLI------DYKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 151 (192)
T ss_dssp HHHHHHHHT--TTTCSEE------ECGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHh--CccCchH------HHHHhh-----------hhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 888887652 1211100 000000 001111 23445566667777777777777777777776
Q ss_pred CC
Q 037713 439 ED 440 (610)
Q Consensus 439 ~~ 440 (610)
..
T Consensus 152 ~~ 153 (192)
T d1hh8a_ 152 EP 153 (192)
T ss_dssp SG
T ss_pred Cc
Confidence 53
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.57 E-value=5.6e-07 Score=84.35 Aligned_cols=188 Identities=11% Similarity=-0.008 Sum_probs=119.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---C--CCHHHHHH
Q 037713 279 IVDMYAKCSDIIAAKDIFGRMRR-----KD----VVSWTSIIVGTAQHGQAEETLALYDEMVSAGV---K--PNEVTFVG 344 (610)
Q Consensus 279 li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~--p~~~t~~~ 344 (610)
....|...|++++|...|.+..+ .+ ..+|+.+...|.+.|++++|++.+++..+.-. . ....++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 34567777777777777776642 12 35677788888888888888888887654211 1 11345556
Q ss_pred HHHHHh-ccCCHHHHHHHHHHhHHhc---CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-------H-HHH
Q 037713 345 LIYACS-HVGLVGKGRKLFKSMIEDY---GITPS-LQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD-------E-PTW 410 (610)
Q Consensus 345 ll~a~~-~~g~~~~a~~~~~~~~~~~---~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-------~-~~~ 410 (610)
+...|. ..|++++|.+.++...+-+ +.++. ..+|..+...|.+.|++++|.+.|++. ...|+ . ..+
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 666664 4699999999998875432 11111 356788889999999999999999886 11111 1 123
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcc-----hHhHHHHhhh--hcchhHHHHHHHH
Q 037713 411 AALLSACKHHRNTEMGTRVANHLLSLKPEDPSS-----YILLSNVYAS--AAMWQHVSKVRKL 466 (610)
Q Consensus 411 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~~--~g~~~~a~~~~~~ 466 (610)
...+..+...|+++.|...+++..+.+|..+.+ ...|+.+|.. .+++++|.+.++.
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~ 265 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDN 265 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 344445677899999999999999998754332 2334445543 3456777666643
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=8.6e-07 Score=70.16 Aligned_cols=105 Identities=13% Similarity=0.046 Sum_probs=79.4
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCc
Q 037713 345 LIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRN 422 (610)
Q Consensus 345 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~ 422 (610)
-...+...|++++|...|...++. -+.+...|..+..+|.+.|++++|+..+++. .+.| +...|..+..++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccC
Confidence 345667778888888888888763 3455677888888888888888888888777 3333 56778888888888888
Q ss_pred hhHHHHHHHHHhcCCCCCCcchHhHHHHh
Q 037713 423 TEMGTRVANHLLSLKPEDPSSYILLSNVY 451 (610)
Q Consensus 423 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 451 (610)
+++|+..++++++++|+++..+..+.++-
T Consensus 87 ~~~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 88888888888888888877666665543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.48 E-value=4.9e-07 Score=79.50 Aligned_cols=120 Identities=8% Similarity=-0.128 Sum_probs=94.7
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHH
Q 037713 337 PNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD-EPTWAALL 414 (610)
Q Consensus 337 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll 414 (610)
|+...+......+.+.|++++|+..|..+++. .+.+...|..+..+|.+.|++++|...|++. .+.|+ ...|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 67777777888888889999999999888774 3456778888888999999999999988887 66674 67788888
Q ss_pred HHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchh
Q 037713 415 SACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQ 458 (610)
Q Consensus 415 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 458 (610)
.++...|++++|+..++++++++|++...+...+..+...+...
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~ 123 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 123 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999888876666655555555444433
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.44 E-value=5.5e-07 Score=79.16 Aligned_cols=97 Identities=11% Similarity=0.011 Sum_probs=87.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHH
Q 037713 373 PSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNV 450 (610)
Q Consensus 373 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 450 (610)
|+...+......|.+.|++++|+..|++. ...| +...|..+..+|.+.|++++|+..++++++++|+++.+|..++.+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~ 81 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence 66777777889999999999999999887 4444 578899999999999999999999999999999999999999999
Q ss_pred hhhhcchhHHHHHHHHHhh
Q 037713 451 YASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 451 ~~~~g~~~~a~~~~~~m~~ 469 (610)
|...|++++|...++...+
T Consensus 82 ~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 82 QLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 9999999999999998754
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.37 E-value=6.6e-06 Score=76.79 Aligned_cols=164 Identities=7% Similarity=-0.020 Sum_probs=95.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHh-cCChHHHHHHHHHHHH----cCCCCC-H
Q 037713 275 ISNAIVDMYAKCSDIIAAKDIFGRMRR-----KD----VVSWTSIIVGTAQ-HGQAEETLALYDEMVS----AGVKPN-E 339 (610)
Q Consensus 275 ~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~-~g~~~~A~~l~~~m~~----~g~~p~-~ 339 (610)
++..+..+|.+.|++++|...+++..+ .+ ..++..+...|.. .|++++|++.|++..+ .+..+. .
T Consensus 79 ~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~ 158 (290)
T d1qqea_ 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhh
Confidence 344444555555555555555444321 11 2344555555543 5888888888877643 111111 3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----H-HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC------H
Q 037713 340 VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPS----L-QHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD------E 407 (610)
Q Consensus 340 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~-~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~------~ 407 (610)
.++..+...+...|++++|...|+.+.......+. . ..+...+..+...|+++.|...+++. .+.|+ .
T Consensus 159 ~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~ 238 (290)
T d1qqea_ 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES 238 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------H
T ss_pred hHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHH
Confidence 45677788888889999999988887764221111 1 23445555677789999999998887 44332 2
Q ss_pred HHHHHHHHHHHh--cCchhHHHHHHHHHhcCCC
Q 037713 408 PTWAALLSACKH--HRNTEMGTRVANHLLSLKP 438 (610)
Q Consensus 408 ~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~p 438 (610)
.....++.++.. .+.+++|+..|+++.+++|
T Consensus 239 ~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~ 271 (290)
T d1qqea_ 239 NFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (290)
T ss_dssp HHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCH
Confidence 344556666554 2346777777776666654
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=1.1e-06 Score=69.62 Aligned_cols=90 Identities=10% Similarity=0.079 Sum_probs=81.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchh
Q 037713 381 LLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQ 458 (610)
Q Consensus 381 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 458 (610)
-...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..++.+|...|+++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 456688999999999999998 4445 57789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhC
Q 037713 459 HVSKVRKLMSVM 470 (610)
Q Consensus 459 ~a~~~~~~m~~~ 470 (610)
+|...++...+.
T Consensus 89 ~A~~~~~~a~~~ 100 (117)
T d1elwa_ 89 EAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 999999998753
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.32 E-value=7.9e-07 Score=69.74 Aligned_cols=88 Identities=17% Similarity=0.102 Sum_probs=78.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcch
Q 037713 380 CLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMW 457 (610)
Q Consensus 380 ~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 457 (610)
.+...+.+.|++++|...|++. ...| +...|..+..++.+.|++++|+..++++++++|+++.++..|+.+|...|++
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCH
Confidence 4566788899999999999987 4455 5788889999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHH
Q 037713 458 QHVSKVRKLM 467 (610)
Q Consensus 458 ~~a~~~~~~m 467 (610)
++|.+.+++.
T Consensus 101 ~~A~~~l~~~ 110 (112)
T d1hxia_ 101 NAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998864
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=4.6e-06 Score=69.97 Aligned_cols=117 Identities=9% Similarity=-0.032 Sum_probs=92.4
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCc
Q 037713 345 LIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRN 422 (610)
Q Consensus 345 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~ 422 (610)
....|.+.|++++|...|++..+. -+.+...|..+..+|.+.|++++|.+.|++. .+.| +...|..+..++...|+
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC
Confidence 345677889999999999888874 3456788888999999999999999999887 4445 46788889999999999
Q ss_pred hhHHHHHHHHHhcCCCCCCcchHhHHHHh--hhhcchhHHHHH
Q 037713 423 TEMGTRVANHLLSLKPEDPSSYILLSNVY--ASAAMWQHVSKV 463 (610)
Q Consensus 423 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~a~~~ 463 (610)
+++|...++++++++|+++..+..+..+. ...+.+++|...
T Consensus 94 ~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 94 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999988777766554 334445555543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=1.6e-06 Score=68.82 Aligned_cols=107 Identities=16% Similarity=0.016 Sum_probs=82.5
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHhC-CCCCCH---HHHHHHHH
Q 037713 343 VGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHL---DEAENLIKAM-PFEPDE---PTWAALLS 415 (610)
Q Consensus 343 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m-~~~p~~---~~~~~ll~ 415 (610)
..+++.+...+++++|.+.|+...+. -+.+..++..+..++.+.++. ++|..++++. ...|+. .+|..|..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 35777788888999999999988873 345678888888888775544 4688888887 444543 36778888
Q ss_pred HHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHh
Q 037713 416 ACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVY 451 (610)
Q Consensus 416 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 451 (610)
+|...|++++|++.++++++++|++..+...+..+.
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~ 116 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 116 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 899999999999999999999999876665554433
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.26 E-value=5.2e-06 Score=70.46 Aligned_cols=134 Identities=11% Similarity=0.008 Sum_probs=95.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 037713 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDL 384 (610)
Q Consensus 305 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 384 (610)
..+......+.+.|++++|+..|++.+..-.... +..+.-......+ ...+|+.+..+
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~--------------~~~~~~~~~~~~~--------~~~~~~nla~~ 71 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYES--------------SFSNEEAQKAQAL--------RLASHLNLAMC 71 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCC--------------CCCSHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcc--------------ccchHHHhhhchh--------HHHHHHHHHHH
Confidence 3445556677777888888888877665311000 0000000111111 12467778889
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHH
Q 037713 385 LSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHV 460 (610)
Q Consensus 385 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 460 (610)
|.+.|++++|+..+++. .+.| +...|..+..++...|++++|+..|+++++++|+++.....+..+..+.+...+.
T Consensus 72 y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 72 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887 4455 6788888999999999999999999999999999999988888887776655544
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=3.5e-05 Score=66.61 Aligned_cols=82 Identities=12% Similarity=-0.062 Sum_probs=43.4
Q ss_pred HHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhhHHHHHHHHHhCCChHHHHHHH
Q 037713 149 MYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP---VRNLFLWTALVSGLVQSRNEIDAFYSF 225 (610)
Q Consensus 149 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~ 225 (610)
.+...|+++.|.+.|+++..++..+|..+...|.+.|++++|++.|++.. ..+...|+.+..+|.+.|++++|++.|
T Consensus 14 ~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~ 93 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDL 93 (192)
T ss_dssp HHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555433 223445555555555555555555555
Q ss_pred HHHHH
Q 037713 226 IEMRR 230 (610)
Q Consensus 226 ~~m~~ 230 (610)
++...
T Consensus 94 ~kAl~ 98 (192)
T d1hh8a_ 94 KEALI 98 (192)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.17 E-value=3.1e-06 Score=71.03 Aligned_cols=91 Identities=7% Similarity=0.010 Sum_probs=81.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcch
Q 037713 380 CLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMW 457 (610)
Q Consensus 380 ~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 457 (610)
.....|.+.|++++|...|++. .+.| +...|..+...|...|++++|+..|+++++++|.++.+|..++.+|...|++
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence 3455688999999999999988 4445 5778888999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhC
Q 037713 458 QHVSKVRKLMSVM 470 (610)
Q Consensus 458 ~~a~~~~~~m~~~ 470 (610)
++|.+.++.....
T Consensus 95 ~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 95 RAALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 9999999988653
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.05 E-value=0.00057 Score=62.03 Aligned_cols=228 Identities=11% Similarity=-0.046 Sum_probs=123.2
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhc----cccHHHHHHHHHHHHHhCCCCchhHH
Q 037713 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACAN----FAVLELGKQIHGLVIALGYESCLFIS 276 (610)
Q Consensus 201 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 276 (610)
|+..+..|...+.+.+++++|++.|++..+.| |...+..+...+.. ..+...+...+....+.+
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g----~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~-------- 68 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-------- 68 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--------
Confidence 34456666666777777777777777776654 22222223333322 223444444444433333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH--Hh
Q 037713 277 NAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQ----HGQAEETLALYDEMVSAGVKPNEVTFVGLIYA--CS 350 (610)
Q Consensus 277 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a--~~ 350 (610)
+...+..+...+.. ..+.+.|...++...+.|..+....+ ..... ..
T Consensus 69 --------------------------~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l-~~~~~~~~~ 121 (265)
T d1ouva_ 69 --------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASL-GGIYHDGKV 121 (265)
T ss_dssp --------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHCSS
T ss_pred --------------------------ccchhhccccccccccccchhhHHHHHHHhhhhhhhhhhHHHhh-cccccCCCc
Confidence 23333333333322 34556666666666555432211111 11111 11
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCc
Q 037713 351 HVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSR----SGHLDEAENLIKAMPFEPDEPTWAALLSACKH----HRN 422 (610)
Q Consensus 351 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~ 422 (610)
.......+...+..... ..+...+..|...|.. ..+...+...++...-..+......|...+.. .++
T Consensus 122 ~~~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d 197 (265)
T d1ouva_ 122 VTRDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKN 197 (265)
T ss_dssp SCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCC
T ss_pred ccchhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccc
Confidence 23445556666555443 2345556666666654 34555666666555222355555555555544 567
Q ss_pred hhHHHHHHHHHhcCCCCCCcchHhHHHHhhh----hcchhHHHHHHHHHhhCCCc
Q 037713 423 TEMGTRVANHLLSLKPEDPSSYILLSNVYAS----AAMWQHVSKVRKLMSVMEVK 473 (610)
Q Consensus 423 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~ 473 (610)
++.|...|++..+.+ ++.++..|+.+|.. ..+.++|.+.+++..+.|..
T Consensus 198 ~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 198 FKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred hhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 888999998888775 45678888888875 33788888888887766653
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.99 E-value=7.7e-05 Score=62.79 Aligned_cols=92 Identities=10% Similarity=0.010 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhh
Q 037713 376 QHYTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYAS 453 (610)
Q Consensus 376 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 453 (610)
..|+.+..+|.+.|++++|+..+++. .+.| +...|..+..++...|++++|+..|+++++++|+++.+...+..+...
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45677888899999999999999887 3334 678888999999999999999999999999999999888888888777
Q ss_pred hcchhH-HHHHHHHH
Q 037713 454 AAMWQH-VSKVRKLM 467 (610)
Q Consensus 454 ~g~~~~-a~~~~~~m 467 (610)
.+...+ ..+++..|
T Consensus 145 ~~~~~e~~kk~~~~~ 159 (168)
T d1kt1a1 145 AKEHNERDRRTYANM 159 (168)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHH
Confidence 765543 44444444
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.98 E-value=0.0062 Score=56.52 Aligned_cols=132 Identities=10% Similarity=0.058 Sum_probs=73.2
Q ss_pred CCchHHHHHHHhhcCCChHHHHHHHccCCCCCcchHHHHHHHHHcCCCchHHHHHHHHhHHCCCCCCChhhHHHHHHHHh
Q 037713 37 YGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACG 116 (610)
Q Consensus 37 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~ 116 (610)
+..--..+.+.+.+.|.++.|..++..+.. |..++..+.+.+++..|.+++.+. + +..+|..+..+|.
T Consensus 13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~d-----~~rl~~~~v~l~~~~~avd~~~k~---~----~~~~~k~~~~~l~ 80 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKA---N----STRTWKEVCFACV 80 (336)
T ss_dssp ----------------CTTTHHHHHHHTTC-----HHHHHHHHHTTTCHHHHHHHHHHH---T----CHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHCCCHHHHHHHHHhCCC-----HHHHHHHHHhhccHHHHHHHHHHc---C----CHHHHHHHHHHHH
Confidence 333344556666677777777777776543 667777777777777777766543 1 4456777777776
Q ss_pred ccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcC---CCChhhHHHHHHHHHhcC
Q 037713 117 SLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIK---LKNSVSWTAMLSAYARSG 185 (610)
Q Consensus 117 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g 185 (610)
.......+ .+...+...+......++..|-..|.+++...+++... ..+...++.++..|++.+
T Consensus 81 ~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 81 DGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC
T ss_pred hCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC
Confidence 65544332 22233334455555667777777777777777777543 335566777777777764
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.98 E-value=2.5e-05 Score=66.04 Aligned_cols=133 Identities=9% Similarity=0.019 Sum_probs=93.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC-CCHHHHHHHHHH
Q 037713 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGIT-PSLQHYTCLLDL 384 (610)
Q Consensus 306 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~ 384 (610)
.+......+...|++++|++.|.+..+. +..........+.. .+. .....|..+..+
T Consensus 29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~~----------~~~~~~~~~~~nla~~ 86 (169)
T d1ihga1 29 DLKNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADGA----------KLQPVALSCVLNIGAC 86 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHHG----------GGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHHH----------HhChhhHHHHHHHHHH
Confidence 3445566677788888888888776531 00000001111100 111 234677888899
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHH
Q 037713 385 LSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHV 460 (610)
Q Consensus 385 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 460 (610)
|.+.|++++|+..+++. .+.| +...|..+..++...|++++|+..|+++++++|+++.++..|..+..+.....+.
T Consensus 87 ~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~ 164 (169)
T d1ihga1 87 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 164 (169)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888 5556 4778999999999999999999999999999999988888887777655544443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.97 E-value=5.5e-05 Score=63.87 Aligned_cols=63 Identities=6% Similarity=-0.013 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhC
Q 037713 408 PTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 408 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 470 (610)
.+|+.+..+|.+.|++++|+..++++++++|+++.++..++.+|...|++++|...++...+.
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 456777888999999999999999999999999999999999999999999999999998653
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.89 E-value=9.7e-05 Score=61.01 Aligned_cols=62 Identities=6% Similarity=0.026 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhh
Q 037713 408 PTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 408 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 469 (610)
.+|..+..+|.+.|++++|+..++++++++|.++.+|..++.+|...|++++|...++...+
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~ 129 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 129 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH
Confidence 35666777788888888888888888888888888888888888888888888888877654
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.85 E-value=8.7e-05 Score=61.31 Aligned_cols=128 Identities=9% Similarity=-0.088 Sum_probs=91.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 037713 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLD 383 (610)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 383 (610)
...+......+.+.|++.+|+..|.+....- |.. ....-......... ....+|+.+..
T Consensus 17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~~-----------~~~~~~~~~~~~~~--------~~~~~~~Nla~ 75 (153)
T d2fbna1 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHT-----------EEWDDQILLDKKKN--------IEISCNLNLAT 75 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTC-----------TTCCCHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cch-----------hhhhhHHHHHhhhh--------HHHHHHhhHHH
Confidence 3456667778888889999988888877531 100 00000000000000 12357778889
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhh
Q 037713 384 LLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYA 452 (610)
Q Consensus 384 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 452 (610)
+|.+.|++++|++.+++. .+.| +...|..+..++...|++++|...|+++++++|+++.+...+..+..
T Consensus 76 ~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 146 (153)
T d2fbna1 76 CYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 146 (153)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999999999887 4445 67899999999999999999999999999999999877666655443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.81 E-value=0.0013 Score=59.50 Aligned_cols=109 Identities=13% Similarity=-0.029 Sum_probs=52.1
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhcCC-CChhHHHHHHHHHHh----cCChHHH
Q 037713 253 VLELGKQIHGLVIALGYESCLFISNAIVDMYAK----CSDIIAAKDIFGRMRR-KDVVSWTSIIVGTAQ----HGQAEET 323 (610)
Q Consensus 253 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A 323 (610)
....+...+......+ +...+..|...|.. ..+...+...++...+ .+..+...+...|.. ..+.++|
T Consensus 125 ~~~~a~~~~~~~~~~~---~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A 201 (265)
T d1ouva_ 125 DFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEA 201 (265)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHH
T ss_pred hhHHHHHHhhhhhccc---ccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhh
Confidence 3444444444444332 33444445555543 2344555555554433 244444444444443 3456666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHhHH
Q 037713 324 LALYDEMVSAGVKPNEVTFVGLIYACSH----VGLVGKGRKLFKSMIE 367 (610)
Q Consensus 324 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~ 367 (610)
+.+|++..+.| +...+..|...|.+ ..+.++|.++|+...+
T Consensus 202 ~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~ 246 (265)
T d1ouva_ 202 LARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCK 246 (265)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHH
T ss_pred hhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH
Confidence 66666665554 23344444444433 2255556666665544
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.79 E-value=9.8e-05 Score=57.23 Aligned_cols=88 Identities=8% Similarity=-0.038 Sum_probs=46.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcC
Q 037713 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSG 389 (610)
Q Consensus 310 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 389 (610)
+...+.+.|++++|+..|++....... +...|..+..++.+.|++++|+..|+...+. .+.+...|..+...|...|
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhccccccccc--ccccccchHHHHHHHHHCC
Confidence 344455555666666666655554221 3555555555555566666666665555542 2233455555555555555
Q ss_pred CHHHHHHHHHh
Q 037713 390 HLDEAENLIKA 400 (610)
Q Consensus 390 ~~~~A~~~~~~ 400 (610)
++++|.+.+++
T Consensus 99 ~~~~A~~~l~~ 109 (112)
T d1hxia_ 99 NANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 55555555543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.72 E-value=3.9e-05 Score=61.27 Aligned_cols=91 Identities=9% Similarity=0.072 Sum_probs=72.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchH-------hHH
Q 037713 378 YTCLLDLLSRSGHLDEAENLIKAM-PFEP-DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYI-------LLS 448 (610)
Q Consensus 378 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~-------~l~ 448 (610)
+-.+...|.+.|++++|.+.|++. .+.| +...|..+..+|...|++++|+..++++++++|+++..+. .++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 345667788889999999988877 3444 5778888999999999999999999999999988776544 455
Q ss_pred HHhhhhcchhHHHHHHHHHh
Q 037713 449 NVYASAAMWQHVSKVRKLMS 468 (610)
Q Consensus 449 ~~~~~~g~~~~a~~~~~~m~ 468 (610)
..+...+++++|.+.++...
T Consensus 87 ~~~~~~~~~~~A~~~~~kal 106 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSL 106 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHH
Confidence 66677778999998887654
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.66 E-value=0.022 Score=52.60 Aligned_cols=136 Identities=9% Similarity=-0.035 Sum_probs=60.9
Q ss_pred CChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHH
Q 037713 103 PDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYA 182 (610)
Q Consensus 103 pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~ 182 (610)
||..-...+.+-|.+.|.++.|..++..+. -+..++..|.+.++++.|.+++.+. .+..+|..+...+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~--~~~~~~k~~~~~l~ 80 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACV 80 (336)
T ss_dssp C----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc--CCHHHHHHHHHHHH
Confidence 444444445555556666666666665322 2344555556666666665555433 24445666666655
Q ss_pred hcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccc
Q 037713 183 RSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFA 252 (610)
Q Consensus 183 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~ 252 (610)
+......|.-+ ......+......++..|-..|.+++.+.++...... .+++...++-++..+++.+
T Consensus 81 ~~~e~~la~i~-~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~--~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 81 DGKEFRLAQMC-GLHIVVHADELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HTTCHHHHHHT-TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--TTCCHHHHHHHHHHHHTTC
T ss_pred hCcHHHHHHHH-HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC--CccchHHHHHHHHHHHHhC
Confidence 55554443221 1111223333345566666666666666666655422 1245555555555555543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.63 E-value=0.00041 Score=58.08 Aligned_cols=63 Identities=6% Similarity=0.015 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhC
Q 037713 408 PTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 408 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 470 (610)
.+|..+..+|.+.|++++|+..++++++++|+++.+|..++.+|...|++++|.+.++...+.
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 346667778899999999999999999999999999999999999999999999999998653
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.62 E-value=0.00023 Score=59.84 Aligned_cols=65 Identities=5% Similarity=-0.036 Sum_probs=59.3
Q ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhC
Q 037713 406 DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 406 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 470 (610)
+...|..+..++.+.|++++|+..++++++++|+++.+|..++.+|...|++++|.+.++...+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 34567778888999999999999999999999999999999999999999999999999988753
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.61 E-value=0.00057 Score=53.53 Aligned_cols=94 Identities=11% Similarity=0.014 Sum_probs=57.6
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC---HHHHHHHHHhcCCCC-----hhHHHHHHHHH
Q 037713 243 SIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSD---IIAAKDIFGRMRRKD-----VVSWTSIIVGT 314 (610)
Q Consensus 243 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~---~~~A~~~~~~~~~~~-----~~~~~~li~~~ 314 (610)
.+++.+...+++++|++.|+.+.+.+ +.+..++..+..++.+.++ +++|+.+|+++...+ ..+|..+..+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 44555556666666666666666654 3455566666666665443 345777777765422 12566677777
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCH
Q 037713 315 AQHGQAEETLALYDEMVSAGVKPNE 339 (610)
Q Consensus 315 ~~~g~~~~A~~l~~~m~~~g~~p~~ 339 (610)
.+.|++++|++.|++..+. .|+.
T Consensus 83 ~~~g~~~~A~~~~~~aL~~--~P~~ 105 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQT--EPQN 105 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred HHHhhhHHHHHHHHHHHHh--CcCC
Confidence 7777777777777777764 4543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.61 E-value=0.00013 Score=61.93 Aligned_cols=119 Identities=7% Similarity=-0.023 Sum_probs=81.2
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchh
Q 037713 345 LIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTE 424 (610)
Q Consensus 345 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~ 424 (610)
........|++++|.+.|.....-+.-.+-.. +....-......-++. -....+..+..++...|+++
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~--------~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~~~ 84 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAALREWRGPVLDD--------LRDFQFVEPFATALVE----DKVLAHTAKAEAEIACGRAS 84 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG--------GTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCccccccc--------CcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCch
Confidence 34566777888888888888766322111000 0000000000011111 02345777888899999999
Q ss_pred HHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhh-----CCCccC
Q 037713 425 MGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSV-----MEVKKE 475 (610)
Q Consensus 425 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~ 475 (610)
+|+..++++++.+|.+...|..++.+|.+.|++++|.+.|+..++ .|+.|.
T Consensus 85 ~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~ 140 (179)
T d2ff4a2 85 AVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG 140 (179)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 999999999999999999999999999999999999999998743 466543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.59 E-value=4.8e-06 Score=84.26 Aligned_cols=222 Identities=9% Similarity=-0.066 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHHHhCCCCch-hHHHHHHHHHHhcCCHHHHHHHHHh
Q 037713 220 DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCL-FISNAIVDMYAKCSDIIAAKDIFGR 298 (610)
Q Consensus 220 ~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~y~~~g~~~~A~~~~~~ 298 (610)
+|.+.|++..+... .....+..+..++...++++++ ++.++... |+. ...+..... .+ ..+..+.+.++.
T Consensus 4 eA~q~~~qA~~l~p--~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~e~~L-w~-~~y~~~ie~~r~ 74 (497)
T d1ya0a1 4 QSAQYLRQAEVLKA--DMTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKVEQDL-WN-HAFKNQITTLQG 74 (497)
T ss_dssp HHHHHHHHHHHHHG--GGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTHHHHH-HH-HHTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC--CCHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhHHHHH-HH-HHHHHHHHHHHH
Confidence 67888888876441 2334455555566666666654 55555442 211 111111111 11 112344455544
Q ss_pred cCC----CChhHHHHHHHHH--HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC
Q 037713 299 MRR----KDVVSWTSIIVGT--AQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGIT 372 (610)
Q Consensus 299 ~~~----~~~~~~~~li~~~--~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 372 (610)
..+ ++..-......++ ...+.++.|+..+....... .++...+..+...+.+.|+.++|...+...... .
T Consensus 75 ~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~ 150 (497)
T d1ya0a1 75 QAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY---I 150 (497)
T ss_dssp HHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHH---H
T ss_pred hcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC---C
Confidence 332 2222222211121 22344455554444433321 234556667777788888888888777665442 1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHH
Q 037713 373 PSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD-EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNV 450 (610)
Q Consensus 373 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 450 (610)
| ...+..+.+.+...|++++|...|++. .+.|+ ...|+.|...+...|+..+|...|.+.+..+|+.+.++..|..+
T Consensus 151 ~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~ 229 (497)
T d1ya0a1 151 C-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA 229 (497)
T ss_dssp H-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 1 256777888888999999999988887 55564 56788888888889999999999999999888888888888877
Q ss_pred hhhhc
Q 037713 451 YASAA 455 (610)
Q Consensus 451 ~~~~g 455 (610)
|.+..
T Consensus 230 ~~~~~ 234 (497)
T d1ya0a1 230 LSKAL 234 (497)
T ss_dssp HHHHT
T ss_pred HHHhh
Confidence 76543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.53 E-value=0.0006 Score=54.02 Aligned_cols=58 Identities=17% Similarity=0.121 Sum_probs=29.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 037713 309 SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE 367 (610)
Q Consensus 309 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 367 (610)
.+...+.+.|++++|+..|++.++... .+...+..+..+|.+.|++++|.+.++.+++
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 66 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHhHHHHHHHcCchHHHHHHHHHHHH
Confidence 344445555555555555555554422 1344555555555555555555555555443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.45 E-value=6.9e-05 Score=61.24 Aligned_cols=43 Identities=9% Similarity=0.102 Sum_probs=29.5
Q ss_pred chhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhCC
Q 037713 422 NTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVME 471 (610)
Q Consensus 422 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 471 (610)
+++.|.+.|+++++++|++...+..|.... .|.+++....+.|
T Consensus 101 ~~~~A~~~~~kal~l~P~~~~~~~~L~~~~-------ka~~~~~e~~k~~ 143 (145)
T d1zu2a1 101 NFDLATQFFQQAVDEQPDNTHYLKSLEMTA-------KAPQLHAEAYKQG 143 (145)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-------THHHHHHHHHHSS
T ss_pred hHHHhhhhhhcccccCCCHHHHHHHHHHHH-------HHHHHHHHHHHHh
Confidence 468899999999999999866555554443 4455555554444
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.31 E-value=8.9e-05 Score=74.59 Aligned_cols=259 Identities=8% Similarity=-0.091 Sum_probs=138.9
Q ss_pred HHHHHHhhCC--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHhHHHHHHHHHhccccHHHHHHHHHHHH
Q 037713 189 DAMEIFEQAP--VR-NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVI 265 (610)
Q Consensus 189 ~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 265 (610)
+|.+.|++.. +| ...+|..+...|...|++++| |+++.... |+...--.+....- ...+..+.+.++...
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d---p~~a~~~~~e~~Lw-~~~y~~~ie~~r~~~ 76 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD---LEYALDKKVEQDLW-NHAFKNQITTLQGQA 76 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC---HHHHHHHTHHHHHH-HHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC---hhhHHHHhHHHHHH-HHHHHHHHHHHHHhc
Confidence 5667776654 22 345677777888888888876 67776644 32111100100000 112334455555555
Q ss_pred HhCCCCchhHHH--HHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 037713 266 ALGYESCLFISN--AIVDMYAKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEV 340 (610)
Q Consensus 266 ~~~~~~~~~~~~--~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 340 (610)
+....++..-.. .+...+...+.++.|...+....+ ++...|..+...+.+.|+.++|...+++.... .| ..
T Consensus 77 k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~~-~~ 153 (497)
T d1ya0a1 77 KNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY--IC-QH 153 (497)
T ss_dssp SCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHH--HH-HH
T ss_pred ccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC--CH-HH
Confidence 443333322221 122223345667777777766543 35677888888999999999999988876543 12 35
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHH
Q 037713 341 TFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-P-FEPDEPTWAALLSACK 418 (610)
Q Consensus 341 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~ 418 (610)
++..+...+...|++++|...|.+..+. .+.+...|+.|...|...|+..+|...|.+. . ..|-..++..|...+.
T Consensus 154 ~~~~LG~l~~~~~~~~~A~~~y~~A~~l--~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 154 CLVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 7788899999999999999999999874 3445689999999999999999999999887 3 3466888888887766
Q ss_pred hcCchhHHHHHHHHHhcCCCCC---CcchHhHHHHhhhhcchhHHHHHHHH
Q 037713 419 HHRNTEMGTRVANHLLSLKPED---PSSYILLSNVYASAAMWQHVSKVRKL 466 (610)
Q Consensus 419 ~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~ 466 (610)
+..+...+ ....+.. ...+..+...+...+.+++..++.+.
T Consensus 232 ~~~~~~~~-------~~~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~~~ 275 (497)
T d1ya0a1 232 KALESRDE-------VKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREK 275 (497)
T ss_dssp HHTTSCCC-------CCSSCCHHHHHHHHHHHHHHHHHTCCGGGHHHHHHH
T ss_pred Hhhhhhhh-------hccccccchHHHHHHHHHHHHHhCCchhhHHHHHHH
Confidence 54332211 0111111 12344555555566666665555443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.28 E-value=0.0005 Score=51.16 Aligned_cols=72 Identities=15% Similarity=0.052 Sum_probs=53.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC----C----CCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHH
Q 037713 378 YTCLLDLLSRSGHLDEAENLIKAM----P----FEPD-EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLS 448 (610)
Q Consensus 378 ~~~li~~~~~~g~~~~A~~~~~~m----~----~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 448 (610)
+-.+...+.+.|++++|...|++. + ..++ ..++..|..++.+.|++++|+..++++++++|+++.++..+.
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~ 87 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 335566666777777777666654 1 1122 567888999999999999999999999999999987777664
Q ss_pred H
Q 037713 449 N 449 (610)
Q Consensus 449 ~ 449 (610)
.
T Consensus 88 ~ 88 (95)
T d1tjca_ 88 Y 88 (95)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.21 E-value=0.00052 Score=56.63 Aligned_cols=87 Identities=15% Similarity=0.002 Sum_probs=59.6
Q ss_pred HHHHhcCCHHHHHHHHHhC----CCCCC----------HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCC-------CC-
Q 037713 383 DLLSRSGHLDEAENLIKAM----PFEPD----------EPTWAALLSACKHHRNTEMGTRVANHLLSLKP-------ED- 440 (610)
Q Consensus 383 ~~~~~~g~~~~A~~~~~~m----~~~p~----------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p-------~~- 440 (610)
..+.+.|++++|++.|++. +..|+ ...|+.+..+|...|++++|...+++.+++.| ..
T Consensus 17 ~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~ 96 (156)
T d2hr2a1 17 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEG 96 (156)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccccccc
Confidence 3444556666666666554 21121 35677777778888888888888887775432 11
Q ss_pred ---CcchHhHHHHhhhhcchhHHHHHHHHHhh
Q 037713 441 ---PSSYILLSNVYASAAMWQHVSKVRKLMSV 469 (610)
Q Consensus 441 ---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 469 (610)
..++..++.+|...|++++|.+.++...+
T Consensus 97 ~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 97 KLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22567889999999999999999988764
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.20 E-value=0.00039 Score=62.88 Aligned_cols=127 Identities=15% Similarity=0.054 Sum_probs=84.3
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcCCHHH
Q 037713 315 AQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPS-LQHYTCLLDLLSRSGHLDE 393 (610)
Q Consensus 315 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~ 393 (610)
.+.|++++|+..+++.++.... |...+..+...++..|++++|...++...+. .|+ ...+..+..++...+..++
T Consensus 7 L~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccccHH
Confidence 4568888888888888876332 6778888888888888888888888888763 444 4555555555555555544
Q ss_pred HHHHHHhC--CCCCC-HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchH
Q 037713 394 AENLIKAM--PFEPD-EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYI 445 (610)
Q Consensus 394 A~~~~~~m--~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 445 (610)
+..-.... ...|+ ...+......+...|+.++|.+.++++.+..|..+..+.
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~ 137 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN 137 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcccc
Confidence 43322221 12232 233333445577889999999999999988887765443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.18 E-value=0.0014 Score=53.86 Aligned_cols=66 Identities=12% Similarity=-0.005 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCC-----HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCC
Q 037713 376 QHYTCLLDLLSRSGHLDEAENLIKAM--------PFEPD-----EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDP 441 (610)
Q Consensus 376 ~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 441 (610)
..|+.+..+|.+.|++++|.+.+++. ...++ ...+..+..+|...|++++|+..|++++++.|...
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~ 134 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 134 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 34555555666666666665555443 11222 22456677888899999999999999887765443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.13 E-value=0.0057 Score=51.29 Aligned_cols=73 Identities=18% Similarity=0.175 Sum_probs=52.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH----hcCCCCCHHH
Q 037713 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE----DYGITPSLQH 377 (610)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~ 377 (610)
...+..+...+...|++++|+..++++.+... -+...|..++.++...|+..+|.+.|+.+.+ ..|+.|...+
T Consensus 67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P-~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 67 VLAHTAKAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 34566777777888888888888888777532 3677777888888888888888877777633 3577777654
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.06 E-value=0.00027 Score=57.57 Aligned_cols=49 Identities=12% Similarity=0.153 Sum_probs=41.6
Q ss_pred CchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcc-----------hhHHHHHHHHHhh
Q 037713 421 RNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAM-----------WQHVSKVRKLMSV 469 (610)
Q Consensus 421 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~-----------~~~a~~~~~~m~~ 469 (610)
+.+++|+..++++++++|+++.+|..++.+|...|+ +++|.+.++...+
T Consensus 55 ~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~ 114 (145)
T d1zu2a1 55 QMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD 114 (145)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc
Confidence 456889999999999999999999999999988764 5778877777654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.77 E-value=0.00055 Score=61.82 Aligned_cols=121 Identities=13% Similarity=0.145 Sum_probs=86.0
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCchhHH
Q 037713 349 CSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPD-EPTWAALLSACKHHRNTEMG 426 (610)
Q Consensus 349 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a 426 (610)
..+.|++++|+..+++.++ .-+.|...+..+...|+..|++++|.+.++.. ...|+ ...+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence 3467999999999999988 45667899999999999999999999999988 55665 44444444444433333333
Q ss_pred HHHHHHHh-cCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhCC
Q 037713 427 TRVANHLL-SLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVME 471 (610)
Q Consensus 427 ~~~~~~~~-~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 471 (610)
........ ..+|++...+...+..+...|+.++|.+.++...+..
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 22221111 1234444556677888999999999999998886543
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.15 E-value=0.62 Score=44.71 Aligned_cols=114 Identities=11% Similarity=0.071 Sum_probs=60.1
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHH----HHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 037713 318 GQAEETLALYDEMVSAGVKPNEVTFVG----LIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDE 393 (610)
Q Consensus 318 g~~~~A~~l~~~m~~~g~~p~~~t~~~----ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 393 (610)
.+.+.|..++......... +...... +.......+..+.+..++...... ..+.....-.+....+.+++..
T Consensus 228 ~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~w~~~~al~~~~~~~ 303 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRG 303 (450)
T ss_dssp HCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHH
T ss_pred cChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc---ccchHHHHHHHHHHHHcCChHH
Confidence 4566677777666553221 2221211 222223345566666666655442 2333333444555556677777
Q ss_pred HHHHHHhCCCCCC--HHHHHHHHHHHHhcCchhHHHHHHHHHhc
Q 037713 394 AENLIKAMPFEPD--EPTWAALLSACKHHRNTEMGTRVANHLLS 435 (610)
Q Consensus 394 A~~~~~~m~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 435 (610)
+...++.|+..|. ..-..=+..+....|+.+.|...|..+-.
T Consensus 304 ~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 7777777743332 11112244556777777777777777653
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.08 E-value=0.008 Score=44.20 Aligned_cols=64 Identities=11% Similarity=-0.097 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC-------CcchHhHHHHhhhhcchhHHHHHHHHHhhC
Q 037713 407 EPTWAALLSACKHHRNTEMGTRVANHLLSLKPED-------PSSYILLSNVYASAAMWQHVSKVRKLMSVM 470 (610)
Q Consensus 407 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 470 (610)
...+..+...+.+.|+++.|...+++++++.|.+ ..++..|+.+|.+.|++++|.+.+++..+.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 3345567788999999999999999998765543 346788999999999999999999998654
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.76 E-value=0.14 Score=38.51 Aligned_cols=140 Identities=7% Similarity=-0.012 Sum_probs=98.2
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 037713 315 AQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEA 394 (610)
Q Consensus 315 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 394 (610)
.-.|..++..++..+...+ .+..-||.++--....-+-+-..+.++.+-+-+.+ ..++++...
T Consensus 13 ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDl--------------s~C~Nlk~v 75 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSV 75 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHH
T ss_pred HHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCc--------------hhhhcHHHH
Confidence 3457777777777776654 25556666665555566666666666665443222 245555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCCCCCCcchHhHHHHhhhhcchhHHHHHHHHHhhCCCc
Q 037713 395 ENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVK 473 (610)
Q Consensus 395 ~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 473 (610)
...+-.++ .+...++.-+.....+|.-+.-.++++.+++.+..+|.....++++|.+.|...++.+++.+.-++|++
T Consensus 76 v~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 76 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 55555553 244556677888899999999999999988877667888999999999999999999999999888875
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=93.07 E-value=0.9 Score=34.83 Aligned_cols=46 Identities=13% Similarity=0.054 Sum_probs=22.4
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHhHH
Q 037713 319 QAEETLALYDEMVSAGVKPNEVTFVGLIYACSH----VGLVGKGRKLFKSMIE 367 (610)
Q Consensus 319 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~ 367 (610)
+.++|+++|++..+.|. ......|...|.+ ..+.++|.++|+...+
T Consensus 74 d~~~A~~~~~~aa~~g~---~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~ 123 (133)
T d1klxa_ 74 DLRKAAQYYSKACGLND---QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 123 (133)
T ss_dssp CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhhhhccCc---chHHHHHHHHHHcCCccCCCHHHHHHHHHHHHH
Confidence 45556666665555442 2223333333332 3456666666666554
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=91.98 E-value=1.8 Score=32.36 Aligned_cols=135 Identities=12% Similarity=0.016 Sum_probs=88.5
Q ss_pred HhcCCHHHHHHHHHhcCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 037713 284 AKCSDIIAAKDIFGRMRR-KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF 362 (610)
Q Consensus 284 ~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 362 (610)
.-.|.+++..++..+... .+..-||=+|.-....-+-+-..+.++..-.. -|. +..+++.....-+
T Consensus 13 ildG~ve~Gveii~k~~~ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDl----------s~C~Nlk~vv~C~ 79 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVECG 79 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHHHH
T ss_pred HHhhhHHhHHHHHHHHcccCCccccceeeeecccccchHHHHHHHHHHhhh---cCc----------hhhhcHHHHHHHH
Confidence 346888888888887764 35555665665555556666666665554321 111 1233444443333
Q ss_pred HHhHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCchhHHHHHHHHHhcCC
Q 037713 363 KSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM--PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLK 437 (610)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 437 (610)
-.+ ..+......-++.+..+|+-+.-.++.+.+ .-+|++...-.+..||.+.|+..++.+++.++-+.+
T Consensus 80 ~~~------n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 80 VIN------NTLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHT------TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHh------cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 322 234456667778888888888888887774 556788888888899999999999998888877654
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=91.88 E-value=1.1 Score=34.28 Aligned_cols=44 Identities=9% Similarity=0.015 Sum_probs=21.9
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 037713 319 QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE 367 (610)
Q Consensus 319 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 367 (610)
++++|+++|++..+.|.. .. ...|. .....+.++|.++++...+
T Consensus 8 d~~~A~~~~~kaa~~g~~-~a--~~~l~--~~~~~~~~~a~~~~~~aa~ 51 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM-FG--CLSLV--SNSQINKQKLFQYLSKACE 51 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT-TH--HHHHH--TCTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCh-hh--hhhhc--cccccCHHHHHHHHhhhhc
Confidence 455666666666665422 11 11121 2233456666666666554
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.82 E-value=0.9 Score=34.18 Aligned_cols=32 Identities=16% Similarity=0.213 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhcCchhHHHHHHHHHhcCCCCC
Q 037713 409 TWAALLSACKHHRNTEMGTRVANHLLSLKPED 440 (610)
Q Consensus 409 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 440 (610)
.+..|.-+|.+.|++++|.+.++++++.+|++
T Consensus 75 ~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n 106 (124)
T d2pqrb1 75 CLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 106 (124)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCCc
Confidence 33444444555555555555555555555554
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.93 E-value=1.2 Score=33.48 Aligned_cols=70 Identities=9% Similarity=0.063 Sum_probs=43.6
Q ss_pred CCCHHHHHHHHHHHhccC---CHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH
Q 037713 336 KPNEVTFVGLIYACSHVG---LVGKGRKLFKSMIEDYGITPS-LQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPDE 407 (610)
Q Consensus 336 ~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~ 407 (610)
.|...|--...-++.++. +.++|+.+++...+. .+.+ ...+..|.-+|.+.|++++|.+.++.+ .+.|+.
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~--~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n 106 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 106 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCc
Confidence 355555555555565543 456777777777653 2223 245566677777888888888887777 555653
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=86.69 E-value=13 Score=34.84 Aligned_cols=284 Identities=8% Similarity=-0.038 Sum_probs=153.8
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHHhCCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHH
Q 037713 127 VHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWT 206 (610)
Q Consensus 127 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 206 (610)
++..+.+.| ..+...+-.-+......|+...|..+...+...........+........+... ..... .+.....
T Consensus 142 l~~~~~~~~-~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~~~~---~~~~~-~~~~~~~ 216 (450)
T d1qsaa1 142 LFSVWRASG-KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTF---ARTTG-ATDFTRQ 216 (450)
T ss_dssp HHHHHHHTT-CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHH---HHHSC-CCHHHHH
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHhHHHH---HhcCC-CChhhhH
Confidence 333334433 233333334455556667777777777776655555555555555443333332 22222 2222222
Q ss_pred HHHHHHHh--CCChHHHHHHHHHHHHcCCCCCCHhHHHHHH----HHHhccccHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 037713 207 ALVSGLVQ--SRNEIDAFYSFIEMRREGVDIVDPLVLSSIV----GACANFAVLELGKQIHGLVIALGYESCLFISNAIV 280 (610)
Q Consensus 207 ~li~~~~~--~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 280 (610)
.+..++.+ ..+++.|..++......... +..-...+. ......+..+.+..........+. +.....-.+
T Consensus 217 ~~~~~l~rla~~d~~~a~~~l~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~w~~ 292 (450)
T d1qsaa1 217 MAAVAFASVARQDAENARLMIPSLAQAQQL--NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRV 292 (450)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHH
T ss_pred HHHHHHHHHhccChhHHHHHHHhhhhcccc--cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc--chHHHHHHH
Confidence 22233322 35678888888877665432 222222222 222334556666666666555443 334444455
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 037713 281 DMYAKCSDIIAAKDIFGRMRRKD---VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGK 357 (610)
Q Consensus 281 ~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 357 (610)
....+.+++..+...|+.|.... ..-.-=+..++...|+.++|...|...... ++ |-..+.+ .+.|..-.
T Consensus 293 ~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~---fYG~LAa-~~Lg~~~~ 365 (450)
T d1qsaa1 293 RMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG---FYPMVAA-QRIGEEYE 365 (450)
T ss_dssp HHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS---HHHHHHH-HHTTCCCC
T ss_pred HHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC---hHHHHHH-HHcCCCCC
Confidence 55667789999999999987421 221122457788899999999999987642 33 3333322 12221000
Q ss_pred HHHHHHHhHHhcCCC--CCH----HHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCchhHHHHHHH
Q 037713 358 GRKLFKSMIEDYGIT--PSL----QHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVAN 431 (610)
Q Consensus 358 a~~~~~~~~~~~~~~--~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 431 (610)
+ .....+ +.. ..-..-+..+...|+..+|...+..+--..+......+.....+.|.++.|+....
T Consensus 366 -------~-~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~~~~~~~~la~lA~~~g~~~~aI~a~~ 437 (450)
T d1qsaa1 366 -------L-KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATI 437 (450)
T ss_dssp -------C-CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -------C-CcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCCCHHHHHHHHHHHHHCCChhHHHHHHH
Confidence 0 000000 000 00112345677889999999888766223355566677777888999999998877
Q ss_pred HHh
Q 037713 432 HLL 434 (610)
Q Consensus 432 ~~~ 434 (610)
+..
T Consensus 438 ~~~ 440 (450)
T d1qsaa1 438 AGK 440 (450)
T ss_dssp HTT
T ss_pred HHH
Confidence 663
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.53 E-value=1.6 Score=30.88 Aligned_cols=63 Identities=13% Similarity=0.228 Sum_probs=50.3
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 037713 319 QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLD 383 (610)
Q Consensus 319 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 383 (610)
+.-++.+-+..+....+.|+.....+.+.||-+.+++..|.++|+..+.+ ..++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K--~~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCcHHHHHHHHH
Confidence 44467777777777888999999999999999999999999999988775 3344557776654
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=81.03 E-value=4.6 Score=28.44 Aligned_cols=61 Identities=11% Similarity=0.171 Sum_probs=40.7
Q ss_pred chHHHHHHHHhHHCCCCCCChhhHHHHHHHHhccCCcHHHHHHHHHHHhcCCCCChhHHHHHH
Q 037713 85 PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLV 147 (610)
Q Consensus 85 ~~~A~~~~~~m~~~~~~~pd~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 147 (610)
.-++.+-++.+...+ +.|++....+.+++|.+.+++..|.++++-+.... .++...|..++
T Consensus 22 ~we~rrgmN~l~~~D-lVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yil 82 (105)
T d1v54e_ 22 AWELRKGMNTLVGYD-LVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 82 (105)
T ss_dssp HHHHHHHHHHHTTSS-BCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccc-cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHH
Confidence 345556666666666 77888888888888888888888888887665432 23344555444
|