Citrus Sinensis ID: 037795

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------
Protein Sequence
FVNNGDAVNQWNEINGRLEISTECAVNASTSNESTPEENWSLPFVKHSSILRAIEPMGVFQKMPQKPHFNLLDGSKDMYLEGLVTGYMLTFANVVEQTSKLQVSDPTSIFNGMFEALLNLESHGFDVKTVHSCLSEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKNESEIAASKSKVDVGNENIQNAQLDFESVAVCLGD
Secondary Structure (PSIPRED)
cccccccccccHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccEEccccccccccccccccccccEccccccccHHHHHHHHHHHHcccccccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
fvnngdavnqwneingrleistecavnastsnestpeenwslpfvkhssilraiepmgvfqkmpqkphfnlldgskdmYLEGLVTGYMLTFANVVEQtsklqvsdptsiFNGMFEALLNLESHGFDVKTVHSCLSEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKNESEIAASKSKVDVGNENIQNAQLDFESVAVCLGD
Flexible Loop (DISEMBL)
fvnngdavnqwneingrleISTECAVNAStsnestpeenwsLPFVKHSSILRAIEPMGVFQKMPQKPHFNLLDGSKDMYLEGLVTGYMLTFANVVEQTSKLQVSDPTSIFNGMFEALLNLESHGFDVKTVHSCLSEMQSIKEKHEQLQEQLLEYECHILEqtseqskitVELDHVVKEIKMLEeskakltskneseiaaskskvdvgneniqnaqldfesVAVCLGD
Low Complexity Region (SEG)
FVNNGDAVNQWNEINGRLEISTECAVNASTSNESTPEENWSLPFVKHSSILRAIEPMGVFQKMPQKPHFNLLDGSKDMYLEGLVTGYMLTFANVVEQTSKLQVSDPTSIFNGMFEALLNLESHGFDVKTVHSCLSEMQSIKEKHeqlqeqlleYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKNESEIAASKSKVDVGNENIQNAQLDFESVAVCLGD
Disordered region (IsUnstruct)
**********WNEINGRLEIST*C***************WSLPFVKHSSILRAIEPMGVFQKMPQKPHFNLLDGSKDMYLEGLVTGYMLTFANVVEQTSKLQVSDPTSIFNGMFEALLNLESHGFDVKTVHSCLSEM*********LQEQLLEYECHILEQT****KITVELDHVVKEI*****************************************VAV****
Disordered Region (DISOPRED)
******************************************PFVKHSSILRAIEPMGVFQKMPQKPHFNLLDGSKDMYLEGLVTGYMLTFANVVEQTSKLQVSDPTSIFNGMFEALLNLESHGFDVKTVHSCLSEMQSI**********************************************************************IQNAQLDFESVAVCL**
Disordered Region (DISEMBL)
FVNNGDAVNQWNEINGRLEISTECAV************NWSLPFVKHSSILRAIEPMGVFQKMPQKPHFNLLDGSKDMYLEGLVTGYMLTFANVVEQTSKLQVSDPTSIFNGMFEALLNLESHGFDVKTVHSCLSEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEES*****************KVDVGNENIQNAQLDFESVAVCLGD
Disordered Region (DISPRO)
**************************************NWSLPFVKHSSILRAIEPMGVFQKMPQKPHFNLLDGSKDMYLEGLVTGYMLTFANVVEQTSKLQVSDPTSIFNGMFEALLNLESHGFDVKTVHSCLSEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKNESEIAASKSKVDVGNENIQNAQLDFESVAVCLGD
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
FVNNGDAVNQWNEINGRLEISTECAVNASTSNESTPEENWSLPFVKHSSILRAIEPMGVFQKMPQKPHFNLLDGSKDMYLEGLVTGYMLTFANVVEQTSKLQVSDPTSIFNGMFEALLNLESHGFDVKTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQSKITVExxxxxxxxxxxxxxxxxxxxxNESEIAASKSKVDVGNENIQNAQLDFESVAVCLGD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	227
297744010	1074	unnamed protein product [Vitis vinifera]	0.964	0.203	0.439	3e-39
359479961	1214	PREDICTED: uncharacterized protein LOC10	0.964	0.180	0.439	4e-39
147791516	1348	hypothetical protein VITISV_005264 [Viti	0.977	0.164	0.424	9e-38
255549173	683	RNA binding protein, putative [Ricinus c	0.823	0.273	0.373	1e-26
255543180	241	hypothetical protein RCOM_1438010 [Ricin	0.823	0.775	0.363	3e-25
255549175	689	RNA binding protein, putative [Ricinus c	0.823	0.271	0.363	4e-25
255607647	201	hypothetical protein RCOM_2139380 [Ricin	0.766	0.865	0.378	1e-24
224068624	919	predicted protein [Populus trichocarpa]	0.863	0.213	0.374	6e-24
224128262	270	predicted protein [Populus trichocarpa]	0.955	0.803	0.337	5e-23
255582388	591	RNA binding protein, putative [Ricinus c	0.806	0.309	0.371	2e-22

>gi|297744010|emb|CBI36980.3| unnamed protein product [Vitis vinifera]

 Score =  167 bits (423), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 98/223 (43%), Positives = 133/223 (59%), Gaps = 4/223 (1%)

Query: 5    GDAVNQWNEINGRLEISTECAVNASTSNESTPEENWSLPFVKHSSILRAIEPMGVFQKMP 64
            G  VNQWNE   R    T+       + E   + N SLPFVK S I   +E + VFQ+MP
Sbjct: 851  GQTVNQWNEARERPSEVTQSP-RIDPTGEIMLDLNQSLPFVKSSPIWNTLETLEVFQRMP 909

Query: 65   QKPHFNLLDGSKDMYLEGLVTGYMLTFANVVEQTSKLQVSDPTSIFNGMFEALLNLESHG 124
            QKPHF  L+  K+   EGL  G M+TF+ ++E+ +KL+  DP SIF    EAL+ LE HG
Sbjct: 910  QKPHFRPLENCKEERREGLAIGNMVTFSTLIEKVAKLRFDDPRSIFGSSLEALVELEMHG 969

Query: 125  FDVKTVHSCLSEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEE 184
            FD K V S ++E+  IK++ EQL+ +  E E  I+E T E++KI  E+  + K++  L+E
Sbjct: 970  FDTKPVQSRINELVFIKDQQEQLKGRTKEVENQIMEHTHEKTKIDEEIYEIDKKMIELQE 1029

Query: 185  SKAKLTSKNE---SEIAASKSKVDVGNENIQNAQLDFESVAVC 224
             +A   S  E   SEIAA  S VD  NE+IQ+A+ DFE VA  
Sbjct: 1030 KRALAVSNKESKDSEIAALLSSVDAMNESIQSARQDFERVATS 1072

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479961|ref|XP_002271627.2| PREDICTED: uncharacterized protein LOC100243428 [Vitis vinifera]

 Score =  167 bits (422), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 98/223 (43%), Positives = 133/223 (59%), Gaps = 4/223 (1%)

Query: 5    GDAVNQWNEINGRLEISTECAVNASTSNESTPEENWSLPFVKHSSILRAIEPMGVFQKMP 64
            G  VNQWNE   R    T+       + E   + N SLPFVK S I   +E + VFQ+MP
Sbjct: 991  GQTVNQWNEARERPSEVTQSP-RIDPTGEIMLDLNQSLPFVKSSPIWNTLETLEVFQRMP 1049

Query: 65   QKPHFNLLDGSKDMYLEGLVTGYMLTFANVVEQTSKLQVSDPTSIFNGMFEALLNLESHG 124
            QKPHF  L+  K+   EGL  G M+TF+ ++E+ +KL+  DP SIF    EAL+ LE HG
Sbjct: 1050 QKPHFRPLENCKEERREGLAIGNMVTFSTLIEKVAKLRFDDPRSIFGSSLEALVELEMHG 1109

Query: 125  FDVKTVHSCLSEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEE 184
            FD K V S ++E+  IK++ EQL+ +  E E  I+E T E++KI  E+  + K++  L+E
Sbjct: 1110 FDTKPVQSRINELVFIKDQQEQLKGRTKEVENQIMEHTHEKTKIDEEIYEIDKKMIELQE 1169

Query: 185  SKAKLTSKNE---SEIAASKSKVDVGNENIQNAQLDFESVAVC 224
             +A   S  E   SEIAA  S VD  NE+IQ+A+ DFE VA  
Sbjct: 1170 KRALAVSNKESKDSEIAALLSSVDAMNESIQSARQDFERVATS 1212

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147791516|emb|CAN64022.1| hypothetical protein VITISV_005264 [Vitis vinifera]

 Score =  162 bits (410), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 96/226 (42%), Positives = 131/226 (57%), Gaps = 4/226 (1%)

Query: 5    GDAVNQWNEINGRLEISTECAVNASTSNESTPEENWSLPFVKHSSILRAIEPMGVFQKMP 64
            G  VNQWNE   R    T+       + E   + N SLPFVK S I   +E + VFQ+MP
Sbjct: 973  GQTVNQWNEARERPSEVTQSP-RIDPTGEIMLDLNQSLPFVKSSPIWNTLETLEVFQRMP 1031

Query: 65   QKPHFNLLDGSKDMYLEGLVTGYMLTFANVVEQTSKLQVSDPTSIFNGMFEALLNLESHG 124
            QKPHF  L+  K+   EGL  G M+TF+ ++E+ +KL+  DP SIF    EAL+ LE HG
Sbjct: 1032 QKPHFRPLENCKEERREGLAIGNMVTFSTLIEKVAKLRFDDPRSIFGSSLEALVELEMHG 1091

Query: 125  FDVKTVHSCLSEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEE 184
            FD K V S ++E+  IK++ EQL+ +  E E  I+E T E++KI  E+  + K++  L+E
Sbjct: 1092 FDTKPVQSRINELVFIKDQQEQLKGRTKEVENQIMEHTHEKTKIDEEIYEIDKKMIELQE 1151

Query: 185  SKAKLTSKNE---SEIAASKSKVDVGNENIQNAQLDFESVAVCLGD 227
             +A   S  E   SEIAA  S  D  NE+IQ+A+ DFE       D
Sbjct: 1152 KRALAVSNKESKDSEIAALLSSADAMNESIQSARQDFERATPDFSD 1197

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549173|ref|XP_002515641.1| RNA binding protein, putative [Ricinus communis] gi|223545235|gb|EEF46743.1| RNA binding protein, putative [Ricinus communis]

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/190 (37%), Positives = 116/190 (61%), Gaps = 3/190 (1%)

Query: 38  ENWSLPFVKHSSILRAIEPMGVFQKMPQKPHFNLLDGSKDMYLEGLVTGYMLTFANVVEQ 97
           EN  +PF K S I + IE + VFQ +PQKPHF+ L   K+   EG+  G+ML+FA ++E+
Sbjct: 492 ENLEMPFFKSSLIWKNIESLEVFQVLPQKPHFSPLIRHKEESREGMAMGHMLSFAVLIEK 551

Query: 98  TSKLQVSDPTSIFNGMFEALLNLESHGFDVKTVHSCLSEMQSIKEKHEQLQEQLLEYECH 157
            SKLQV D   +F+   E L +LE HGF V+ +  CL ++ SIK++ ++L+++  +    
Sbjct: 552 MSKLQVDDGREVFDSYMEVLADLEMHGFQVEAIAECLEKLLSIKDRCKRLEDEAKKVHIG 611

Query: 158 ILEQTSEQSKITVELDHVVKEIKMLEESKA-KLTSK--NESEIAASKSKVDVGNENIQNA 214
           + E   E+ K+  ++D + K I +LEE +A K++ K   +SE+   +   +  NE+I N 
Sbjct: 612 MAEGKHEKIKLEEDIDKIEKRISLLEEQRAMKVSMKMMKDSELITLQVNANAVNEDIVNM 671

Query: 215 QLDFESVAVC 224
           + +FE+VA  
Sbjct: 672 EHEFENVATA 681

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543180|ref|XP_002512653.1| hypothetical protein RCOM_1438010 [Ricinus communis] gi|223548614|gb|EEF50105.1| hypothetical protein RCOM_1438010 [Ricinus communis]

 Score =  120 bits (302), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 69/190 (36%), Positives = 115/190 (60%), Gaps = 3/190 (1%)

Query: 38  ENWSLPFVKHSSILRAIEPMGVFQKMPQKPHFNLLDGSKDMYLEGLVTGYMLTFANVVEQ 97
           EN  +PF+K S I + IE + VFQ +PQ+PHF+ L G K+   EG+  G+ML+FA ++E+
Sbjct: 50  ENLEMPFLKSSLIWKNIESLEVFQVLPQRPHFSPLIGHKEASREGMAMGHMLSFAVLIEK 109

Query: 98  TSKLQVSDPTSIFNGMFEALLNLESHGFDVKTVHSCLSEMQSIKEKHEQLQEQLLEYECH 157
            SKL+V D   +F    E L +LE HGF+VK +   L ++ SIK++ ++L+++  +    
Sbjct: 110 MSKLRVDDGREVFESYMEVLADLEMHGFEVKAIAERLEKLLSIKDRCKRLEDEAKKVHIR 169

Query: 158 ILEQTSEQSKITVELDHVVKEIKMLEESKA-KLTSK--NESEIAASKSKVDVGNENIQNA 214
           + E   E+ K+  ++D + K I  LEE +A K++ K   +SE+   +   +  NE+  N 
Sbjct: 170 MAEGKHEKIKLEEDVDKIDKLISQLEEQRAMKVSMKVMKDSELITLQVNANAVNEDTVNM 229

Query: 215 QLDFESVAVC 224
           + +FE+VA  
Sbjct: 230 EHEFENVAAA 239

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549175|ref|XP_002515642.1| RNA binding protein, putative [Ricinus communis] gi|223545236|gb|EEF46744.1| RNA binding protein, putative [Ricinus communis]

 Score =  120 bits (301), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 69/190 (36%), Positives = 116/190 (61%), Gaps = 3/190 (1%)

Query: 38  ENWSLPFVKHSSILRAIEPMGVFQKMPQKPHFNLLDGSKDMYLEGLVTGYMLTFANVVEQ 97
           E+  +PF+K S I + IE + VFQ +PQKPHF+ L G K+   EG+  G+ML+FA ++E+
Sbjct: 498 EDLEMPFLKSSLIWKNIESLEVFQVLPQKPHFSPLIGHKEASREGMAMGHMLSFAVLIEK 557

Query: 98  TSKLQVSDPTSIFNGMFEALLNLESHGFDVKTVHSCLSEMQSIKEKHEQLQEQLLEYECH 157
            SKL+V D   +F    E L  LE HGF+VK +   L ++ SIK++ ++L+++  +    
Sbjct: 558 MSKLRVDDGREVFESYMEVLAELEMHGFEVKAIAERLEKLLSIKDRCKRLEDEAKKVHIG 617

Query: 158 ILEQTSEQSKITVELDHVVKEIKMLEESKA-KLTSK--NESEIAASKSKVDVGNENIQNA 214
           + E  +E+ K+  ++D + + I  LEE +A K++ K   +SE+   +   +  NE+I N 
Sbjct: 618 MAEGKNEKIKLEEDIDKIEERISQLEEQRAMKVSMKMMKDSELITLQVNANAVNEDIVNM 677

Query: 215 QLDFESVAVC 224
           + +FE+VA  
Sbjct: 678 EHEFENVAAA 687

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255607647|ref|XP_002538760.1| hypothetical protein RCOM_2139380 [Ricinus communis] gi|223510536|gb|EEF23623.1| hypothetical protein RCOM_2139380 [Ricinus communis]

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/177 (37%), Positives = 109/177 (61%), Gaps = 3/177 (1%)

Query: 38  ENWSLPFVKHSSILRAIEPMGVFQKMPQKPHFNLLDGSKDMYLEGLVTGYMLTFANVVEQ 97
           EN  +PF+K S I + IE + VFQ +PQKPHF+ L G K+   EG+  G+ML+FA ++E+
Sbjct: 25  ENLEMPFLKSSLIWKNIESLEVFQVLPQKPHFSPLIGHKEASREGMAMGHMLSFAVLIEK 84

Query: 98  TSKLQVSDPTSIFNGMFEALLNLESHGFDVKTVHSCLSEMQSIKEKHEQLQEQLLEYECH 157
            SKLQV D   +F    E L  LE HGF+VK +   L ++ SIK++ ++L+++  +    
Sbjct: 85  MSKLQVDDGREVFESYMEVLAELEMHGFEVKAIAERLEKLLSIKDRCKRLEDEAKKVHIG 144

Query: 158 ILEQTSEQSKITVELDHVVKEIKMLEESKA-KLTSK--NESEIAASKSKVDVGNENI 211
           + E  +E+ K+  ++D + K I+ LEE +A K++ K   +SE+   +   +  NE+I
Sbjct: 145 MAEGKNEKIKLEEDIDKIEKRIRQLEEQRAMKVSMKMMKDSELITLQVNANAVNEDI 201

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068624|ref|XP_002302785.1| predicted protein [Populus trichocarpa] gi|222844511|gb|EEE82058.1| predicted protein [Populus trichocarpa]

 Score =  116 bits (291), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 76/203 (37%), Positives = 114/203 (56%), Gaps = 7/203 (3%)

Query: 24  CAVNASTSNESTPEENWSLPFVKHSSILRAIEPMGVFQKMPQKPHFNLLDGSKDMYLEGL 83
           C V+  +++  T  EN  +PFVK S +   IE M VFQ +PQKPHF+ L   K+ Y EG 
Sbjct: 713 CTVDPKSND--TMVENQLVPFVKKSPVWNTIESMEVFQIIPQKPHFHPLTECKEEYREGS 770

Query: 84  VTGYMLTFANVVEQTSKLQVSDPTSIFNGMFEALLNLESHGFDVKTVHSCLSEMQSIKEK 143
             G M+TFA++ E+ S LQ  D  SI     E+L++LE HGFD+      L+E+ SIK+ 
Sbjct: 771 AIGIMVTFASLFEKISSLQFDDCRSILESTLESLVDLEKHGFDITVPRCRLNELLSIKDG 830

Query: 144 HEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEE----SKAKLTSKNESEIAA 199
             ++  +  + E  I   T E+ K+  ++  + K+I  L+E    +KAK+  K   +I+ 
Sbjct: 831 QGEVINESKDAEEKIRVHTDEKRKLEEKMSDIEKKITELQEELALTKAKMDVKG-LDISK 889

Query: 200 SKSKVDVGNENIQNAQLDFESVA 222
            +S  D  NE I+NA+  F  VA
Sbjct: 890 MQSHADAINERIKNARDHFVKVA 912

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128262|ref|XP_002320283.1| predicted protein [Populus trichocarpa] gi|222861056|gb|EEE98598.1| predicted protein [Populus trichocarpa]

 Score =  113 bits (283), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 125/225 (55%), Gaps = 8/225 (3%)

Query: 3   NNGDAVNQWNEINGRLEISTE-CAVNASTSNESTPEENWSLPFVKHSSILRAIEPMGVFQ 61
           + G A +  +E   +  ++ E C ++A  ++  T  EN S+PFVK S +   IE M VF+
Sbjct: 42  STGRAASGGSEAREKQAVAVESCTIDAKGND--TLVENQSVPFVKRSPVWNTIESMEVFR 99

Query: 62  KMPQKPHFNLLDGSKDMYLEGLVTGYMLTFANVVEQTSKLQVSDPTSIFNGMFEALLNLE 121
            +PQK HF+ L   K+ Y EG   G M+TFA++ ++ + LQ  D  SI     E+LL+LE
Sbjct: 100 AIPQKLHFHPLTECKEEYREGSAIGIMVTFASLFDKITSLQFDDCRSILESTLESLLDLE 159

Query: 122 SHGFDVKTVHSCLSEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKM 181
            HGFD+      L+E+ SIK+   ++  +  + E  +   T E+ K+  + + + K+I  
Sbjct: 160 KHGFDITVPRGRLNELLSIKDGQGEVLNESKDAEGKLRVHTDEKRKLEEKRNDIEKKITE 219

Query: 182 LEE----SKAKLTSKNESEIAASKSKVDVGNENIQNAQLDFESVA 222
           L+E    +KAK+  KN  +++  +S  +  NE I+NA+  F  VA
Sbjct: 220 LQEELALTKAKMGIKN-LDLSKLQSHANAINERIKNARDHFGKVA 263

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582388|ref|XP_002531983.1| RNA binding protein, putative [Ricinus communis] gi|223528380|gb|EEF30419.1| RNA binding protein, putative [Ricinus communis]

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/183 (37%), Positives = 102/183 (55%)

Query: 42  LPFVKHSSILRAIEPMGVFQKMPQKPHFNLLDGSKDMYLEGLVTGYMLTFANVVEQTSKL 101
           +PF K S +   IE M VF+ +PQKPHF+ L   ++   EG+   +M+TFA +VE+TSKL
Sbjct: 407 MPFHKSSFVWGDIESMEVFRLLPQKPHFSPLIEFEEASREGVAMRHMMTFAMLVEKTSKL 466

Query: 102 QVSDPTSIFNGMFEALLNLESHGFDVKTVHSCLSEMQSIKEKHEQLQEQLLEYECHILEQ 161
           +V DP ++F    E L NL  HGFDVK V   L+ + S+K+++EQL+         ++E 
Sbjct: 467 RVDDPRNLFQSYLEILANLRLHGFDVKAVMDRLNMLLSMKDRYEQLKGPSKNGHVQLIEH 526

Query: 162 TSEQSKITVELDHVVKEIKMLEESKAKLTSKNESEIAASKSKVDVGNENIQNAQLDFESV 221
             E  K+   +D   K I    E +A      +S   ASK   +V + +I + +L FES+
Sbjct: 527 NYEMMKLEEGIDKTDKTISESGEKQAMKVVTKDSGNNASKVDAEVISADILSTKLQFESL 586

Query: 222 AVC 224
           A  
Sbjct: 587 AAA 589

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	227
TAIR|locus:2065165	469	DUF5 "AT2G47220" [Arabidopsis	0.863	0.417	0.287	8.3e-17
TAIR|locus:2200146	604	DUF2 "DOMAIN OF UNKNOWN FUNCTI	0.819	0.307	0.272	3.2e-13
TAIR|locus:2172838	426	DUF9 "DOMAIN OF UNKNOWN FUNCTI	0.784	0.417	0.281	7.2e-13
TAIR|locus:2172858	552	DUF 10 "DOMAIN OF UNKNOWN FUNC	0.788	0.324	0.270	4.2e-12
TAIR|locus:2197985	695	AT1G26540 [Arabidopsis thalian	0.762	0.248	0.274	2.1e-11
TAIR|locus:2014505	670	ATDUF1 "DOMAIN OF UNKNOWN FUNC	0.850	0.288	0.241	6.8e-11

TAIR|locus:2065165 DUF5 "AT2G47220" [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 8.3e-17, P = 8.3e-17
 Identities = 58/202 (28%), Positives = 101/202 (50%)

Query:    28 ASTSNESTPEENWS--LPFVKHSSILRAIEPMGVFQKMPQKPHFNLLDGSKDMYLEGLVT 85
             A   +E T  ++ +  LPFVK S + +  E M VF+++PQ PHF+ L  +K+ + EG   
Sbjct:   270 ADDDDEETKAKDATMVLPFVKKSPVWKIYESMEVFKRVPQSPHFSPLFEAKEDFREGFAL 329

Query:    86 GYMLTFANVVEQTSKLQVSDPTSIFNGMFEALLNLESHGFDVKTVHSCLSEMQSIKEKHX 145
             G M+TF+ V+E+   L+   P    N + ++   LE HGF V    S ++++ ++K++  
Sbjct:   330 GMMVTFSGVLEKVEDLKTDVPIRQLNSLKDSFTELEKHGFTVTAPLSRIAKLLALKDRQL 389

Query:   146 XXXXXXXXYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKNESEIAASKSKVD 205
                     ++  + +++S++ K   E   +  E K+LE  K K+    + E A  K K D
Sbjct:   390 KILEELKVFDKEMKDESSKKHKAEQEFGEM--ERKILEV-KNKVLELQKQEAALEKQK-D 445

Query:   206 VGNENIQNAQLDFESVAVCLGD 227
                E I   +     + V L D
Sbjct:   446 ATYEKICKMESRARDLGVELED 467

GO:0000175 "3'-5'-exoribonuclease activity" evidence=ISS

GO:0003723 "RNA binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006396 "RNA processing" evidence=ISS

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

TAIR|locus:2200146 DUF2 "DOMAIN OF UNKNOWN FUNCTION 724 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 3.2e-13, P = 3.2e-13
 Identities = 54/198 (27%), Positives = 93/198 (46%)

Query:    12 NEINGRLEISTECAVNASTSNESTPEENWS------LPFVKHSSILRAIEPMGVFQKMPQ 65
             N    +  +S++   N   ++ S  EEN +      LPF K S + +  E + VF+ +  
Sbjct:   370 NSYINKTVLSSDRTPNVVKNSASNAEENHAKHTIMVLPFAKKSPVWKTYESLEVFKSVSH 429

Query:    66 KPHFNLLDGSKDMYLEGLVTGYMLTFANVVEQTSKLQVSDPTSIFNGMFEALLNLESHGF 125
               HF+ L  +K  + EG   G M+T+  ++E+   L+   P S  N + ++   LE HGF
Sbjct:   430 SLHFSPLFETKQDFREGYAIGMMVTYFGLLEKFKDLEADVPVSQLNSLKDSFSELEKHGF 489

Query:   126 DVKTVHSCLSEMQSIKEKHXXXXXXXXXYECHILEQTSEQSKITVELDHVVKEIKMLEES 185
             +V T  S + ++ ++K++          ++    E T+E SK   E D +  E K+LE  
Sbjct:   490 NVTTPLSRIDKLLALKDRQLYIMEELKGFD---KEMTNEFSKAKQEFDDM--EQKILEV- 543

Query:   186 KAKLTSKNESEIAASKSK 203
             K K+      E A  + K
Sbjct:   544 KHKIIELQRQEAALKEQK 561

GO:0003723 "RNA binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR|locus:2172838 DUF9 "DOMAIN OF UNKNOWN FUNCTION 724 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 7.2e-13, P = 7.2e-13
 Identities = 54/192 (28%), Positives = 92/192 (47%)

Query:    31 SNESTPEENWSLPFVKHSSILRAIEPMGVFQKMPQKPHFNLLDGSKDMYLEGLVTGYMLT 90
             S+ S  +   +LPF K  SI + +E +   + +PQ PHF+ L  +++   E    G MLT
Sbjct:   245 SDASVEDTTMTLPFEKKLSIWKTLESV---ETVPQSPHFSPLVETREDCREMSAVGMMLT 301

Query:    91 FANVVEQTSKLQVSDPTSIFNGMFEALLNLESHGFDVKTVHSCLSEMQSIKEKHXXXXXX 150
             F  ++E+   LQ  +  S    +      LE HGF+VK   S +S++ S++ K       
Sbjct:   302 FPCLLEEVKSLQHDNSISSLISLSNNFCELEKHGFNVKAPQSRISKLLSLRGKQSMKMDE 361

Query:   151 XXXYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKNESEIAASKSKVDVGNEN 210
                 E    + T+E+  I +E +  + E++ L E   K       EIA SKS      + 
Sbjct:   362 LKGAE----KVTAEKESIKIENERKILELQRLNEEVDK-------EIAQSKSCAAKIVQQ 410

Query:   211 IQNAQLDFESVA 222
             +++ +L F++ A
Sbjct:   411 LEDVELQFQTTA 422

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006302 "double-strand break repair" evidence=RCA

GO:0006312 "mitotic recombination" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

TAIR|locus:2172858 DUF 10 "DOMAIN OF UNKNOWN FUNCTION 724 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 4.2e-12, P = 4.2e-12
 Identities = 52/192 (27%), Positives = 90/192 (46%)

Query:    31 SNESTPEENWSLPFVKHSSILRAIEPMGVFQKMPQKPHFNLLDGSKDMYLEGLVTGYMLT 90
             S  S  E N  + F K   + + +E M VF+ +PQ PHF  L   ++   E L  G MLT
Sbjct:   362 SGSSVEETN--ILFEKKLPVWKILESMEVFKTIPQSPHFRPLAEIREDSREMLAVGMMLT 419

Query:    91 FANVVEQTSKLQVSDPTSIFNGMFEALLNLESHGFDVKTVHSCLSEMQSIKEKHXXXXXX 150
             F+ ++EQ   LQ  +  S F  +  +   LE HGF+ +     ++++ +++         
Sbjct:   420 FSCLLEQVKALQHDEARSSFISLSNSFAELEKHGFNAQVAQLRINKLLTLRGMQSRKMDE 479

Query:   151 XXXYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKNESEIAASKSKVDVGNEN 210
                 +    + T+E+  + VE +  + E++ L E  AK       EIA S S      + 
Sbjct:   480 LKGAK----KVTAEKESVKVENERKILELQRLNEEMAK-------EIAQSMSCEGKILQQ 528

Query:   211 IQNAQLDFESVA 222
             + N +L+F++ A
Sbjct:   529 LDNMKLEFQATA 540

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2197985 AT1G26540 [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 2.1e-11, P = 2.1e-11
 Identities = 50/182 (27%), Positives = 84/182 (46%)

Query:    43 PFVKHSSILRAIEPMGVFQKMPQKPHFN-LLDGSKDMYLEGLVTGYMLTFANVVEQTSKL 101
             PF K+    +  E    ++ +PQ PHF+ LL+  +D+  E    G M++F  ++E+  KL
Sbjct:   509 PFTKNLPFWKTYEMEKGYKTVPQNPHFSPLLEFKEDIR-EWSAVGMMVSFYGLLEEVKKL 567

Query:   102 QVSDPTSIFNGMFEALLNLESHGFDVKTVHSCLSEMQSIKEKHXXXXXXXXXYECHILEQ 161
             Q+   +S    +      LE HGFD+ T  S ++++ S++             E  I  +
Sbjct:   568 QLDVSSSKLGSLSTCFAELEKHGFDIATPQSRINKVLSLQVGRAKKVEERKCLEKRIEAE 627

Query:   162 TSEQSKITVELDHVVKEIKMLEESKAKLTSKNESE-----IAASKSKVDVGNENIQNAQL 216
               E  K   E+  V  E KMLE  +    +K + E     I   KS  +  ++ I N +L
Sbjct:   628 EIEMQKFEHEMVEV--ERKMLELKRRAEVAKEKKEAADKMIVEMKSSAETIDQEIANVEL 685

Query:   217 DF 218
             +F
Sbjct:   686 EF 687

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0031047 "gene silencing by RNA" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0048451 "petal formation" evidence=RCA

GO:0048453 "sepal formation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2014505 ATDUF1 "DOMAIN OF UNKNOWN FUNCTION 724 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 6.8e-11, P = 6.8e-11
 Identities = 49/203 (24%), Positives = 99/203 (48%)

Query:    26 VNASTSN-ESTPEENWSL--PFVKHSSILRAIEPMGVFQKMPQKPHFNLLDGSKDMYLEG 82
             VN+  ++ E TP ++     PF K     ++ E   +++ +PQ PHF+ L  +K+   E 
Sbjct:   464 VNSFAADAEETPAKSARTISPFAKKLPFWKSYETDELYKSLPQSPHFSPLFKAKEDIREW 523

Query:    83 LVTGYMLTFANVVEQTSKLQVSDPTSIFNGMFEALLNLESHGFDVKTVHSCLSEMQSIKE 142
                G M+TF  ++++   LQ+ D +S  + +  +L  LE HGF+V    S +S++  +++
Sbjct:   524 SAVGMMVTFYCLLKEVKDLQLDDSSSKLSSLSSSLAELEKHGFNVTDPLSRISKVLPLQD 583

Query:   143 KHXXXXXXXXXYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKNESE-----I 197
             K           E  I  +  E+ +   E     + I  +E+ +  L +K + E     I
Sbjct:   584 KRAKKAEERKCLEKKIECEEIERKRFEEEFADFERII--IEKKRQALVAKEKKEAADKRI 641

Query:   198 AASKSKVDVGNENIQNAQLDFES 220
                K+  +  ++ I++ +L+F++
Sbjct:   642 GEMKTCAETIDQEIKDEELEFQT 664


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.311   0.127   0.354    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      227       218   0.00091  112 3  11 23  0.45    33
                                                     32  0.39    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  600 (64 KB)
  Total size of DFA:  178 KB (2104 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.29u 0.14s 23.43t   Elapsed:  00:00:02
  Total cpu time:  23.29u 0.14s 23.43t   Elapsed:  00:00:02
  Start:  Fri May 10 00:23:35 2013   End:  Fri May 10 00:23:37 2013

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	227
pfam05266	190	pfam05266, DUF724, Protein of unknown function (DU	7e-29
pfam07851	330	pfam07851, TMPIT, TMPIT-like protein	5e-04

>gnl|CDD|114015 pfam05266, DUF724, Protein of unknown function (DUF724)

 Score =  106 bits (267), Expect = 7e-29
 Identities = 59/185 (31%), Positives = 99/185 (53%), Gaps = 3/185 (1%)

Query: 42  LPFVKHSSILRAIEPMGVFQKMPQKPHFNLLDGSKDMYLEGLVTGYMLTFANVVEQTSKL 101
           LPF K S   +  E M VF+K+PQ PHF+ L  + +   EG   G M+TF  ++E+  KL
Sbjct: 3   LPFTKKSPFWKTFESMEVFKKVPQSPHFSPLLETPEDLREGTAVGLMVTFIGLLEEVKKL 62

Query: 102 QVSDPTSIFNGMFEALLNLESHGFDVKTVHSCLSEMQSIKEKHEQLQEQLLEYECHILEQ 161
           Q+ D  S F  + +    LE HGF+V+ + S L+++ S+K+   +  E+    E  I E+
Sbjct: 63  QIDDSISEFESLSKCFSELEKHGFNVQALQSRLNKLLSLKDDQTKKLEERKGLEKEIAEK 122

Query: 162 TSEQSKITVELDHVVKEIKMLEESKAKLTSKNE---SEIAASKSKVDVGNENIQNAQLDF 218
              + ++  E+  + ++I  L+   A L  K E    EIA  KS+     + + +A+L+F
Sbjct: 123 EISRQELDSEIAELERKILELQRQAALLKEKKEAEDKEIARLKSEASKIKQELVDAELEF 182

Query: 219 ESVAV 223
           ++ A 
Sbjct: 183 QTTAA 187

This family contains several uncharacterized proteins found in Arabidopsis thaliana and other plants. This region is often found associated with Agenet domains and may contain coiled-coil. Length = 190

>gnl|CDD|149105 pfam07851, TMPIT, TMPIT-like protein

 Score = 40.1 bits (94), Expect = 5e-04
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 3/87 (3%)

Query: 132 SCLSEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTS 191
            C  E + ++++ +QLQE    Y+  + E    Q + T  +    K +K L  S  KL  
Sbjct: 1   ECEEEWKELEKEFQQLQETHRLYKQKLEEVEKLQEQCTSAIARQRKRLKQLIVSLKKLKK 60

Query: 192 KNESEIAASKSKVDVGNENIQNAQLDF 218
               E       V+   E I+  +  F
Sbjct: 61  SLTPE---DSELVEQLEEQIKERKNQF 84

A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. Length = 330

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	227
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	100.0
PF05278	269	PEARLI-4: Arabidopsis phospholipase-like protein (	97.63
PF08581	79	Tup_N: Tup N-terminal; InterPro: IPR013890 The N-t	95.22
PRK11637	428	AmiB activator; Provisional	94.98
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	93.09
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	92.85
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	92.14
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	91.93
PF15294	278	Leu_zip: Leucine zipper	91.51
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	91.43
PHA02562	562	46 endonuclease subunit; Provisional	91.37
PRK11637	428	AmiB activator; Provisional	91.29
PF00038	312	Filament: Intermediate filament protein; InterPro:	90.7
COG2433	652	Uncharacterized conserved protein [Function unknow	89.84
PF04912	388	Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamit	89.51
PF06810	155	Phage_GP20: Phage minor structural protein GP20; I	89.4
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	89.04
PF10186	302	Atg14: UV radiation resistance protein and autopha	88.73
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	87.84
PF00038	312	Filament: Intermediate filament protein; InterPro:	87.48
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	87.19
PF05529	192	Bap31: B-cell receptor-associated protein 31-like	87.15
PRK04778	569	septation ring formation regulator EzrA; Provision	86.01
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	85.39
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	85.34
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	85.26
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	84.88
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	84.78
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	84.56
PHA02562	562	46 endonuclease subunit; Provisional	84.49
COG1561	290	Uncharacterized stress-induced protein [Function u	83.92
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	83.85
TIGR00255	291	conserved hypothetical protein TIGR00255. The appa	83.84
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	82.61
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	81.55
PRK09039	343	hypothetical protein; Validated	81.13
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	80.94
KOG0963	629	consensus Transcription factor/CCAAT displacement	80.9
PRK10869	553	recombination and repair protein; Provisional	80.18

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=100.00  E-value=9.9e-69  Score=459.95  Aligned_cols=185  Identities=39%  Similarity=0.615  Sum_probs=181.2

Q ss_pred             CccCcccccchhhhhhhhhhcccCCCCCCCccccCCchhhhhHHHHHHHHHHHHHHHHHhcccCCCchhhHHHHHHHHHH
Q 037795           40 WSLPFVKHSSILRAIEPMGVFQKMPQKPHFNLLDGSKDMYLEGLVTGYMLTFANVVEQTSKLQVSDPTSIFNGMFEALLN  119 (227)
Q Consensus        40 ~~lPF~K~s~~W~~~EsmeVFk~vPQ~PHF~pL~~~~e~~REg~A~Glm~tF~~l~e~v~~l~idD~~s~fe~~~~tl~~  119 (227)
                      +++||+|+||+|++||+||||++|||+|||+||++++|++|||+|+|||++|++|+|+|++++||||++.|+++++||++
T Consensus         1 ~~~pF~K~s~~W~~~E~mevfk~vPQ~PHF~pL~~~~e~~REg~A~Glm~~f~~l~e~v~~l~idd~~~~f~~~~~tl~~   80 (190)
T PF05266_consen    1 MVLPFVKKSPVWKTIESMEVFKKVPQSPHFSPLQEFKEELREGMAVGLMVTFANLAEKVKKLQIDDSRSSFESLMKTLSE   80 (190)
T ss_pred             CCCCcccccchhHHHHHHHHHHcCCCCCCChhhhcCcHHhhhHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCchhhhHHHHHHHHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhh---hhH
Q 037795          120 LESHGFDVKTVHSCLSEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKN---ESE  196 (227)
Q Consensus       120 LE~~GFdV~~l~sRL~kLL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~~---d~e  196 (227)
                      ||+|||||++||+||++||+||+++++++++++++++++.+++.++.+++..+.+++++|.+|+++.+.++.++   |++
T Consensus        81 LE~~GFnV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~e  160 (190)
T PF05266_consen   81 LEEHGFNVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKE  160 (190)
T ss_pred             HHHcCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999988876554   999


Q ss_pred             HHhhhhhHHHHHHHHHHHHHhHHHhHhh
Q 037795          197 IAASKSKVDVGNENIQNAQLDFESVAVC  224 (227)
Q Consensus       197 i~~Lks~~~~~~e~~~~ae~eF~svaaa  224 (227)
                      |++||+++++++++|.+++++|++||||
T Consensus       161 i~~lks~~~~l~~~~~~~e~~F~~~~aa  188 (190)
T PF05266_consen  161 ISRLKSEAEALKEEIENAELEFQSVAAA  188 (190)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999997

>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4

Probab=97.63  E-value=0.0034  Score=57.60  Aligned_cols=123  Identities=20%  Similarity=0.258  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHHhccc-CCCchhhHHHHHHHHHHHHhCCCchhhhHHHHHHHHHhHHh---HHHHHHHHHHHHHHHhhhh
Q 037795           87 YMLTFANVVEQTSKLQ-VSDPTSIFNGMFEALLNLESHGFDVKTVHSCLSEMQSIKEK---HEQLQEQLLEYECHILEQT  162 (227)
Q Consensus        87 lm~tF~~l~e~v~~l~-idD~~s~fe~~~~tl~~LE~~GFdV~~l~sRL~kLL~lK~~---~~~~~~~~k~le~~i~e~~  162 (227)
                      +|-+..+++....+.. -+=+.+.+.....++.+||.-||+|.-||.+|++++..+.-   +.....+....+.++....
T Consensus       127 yLe~Lc~IIqeLq~t~~~~LS~~dl~e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~  206 (269)
T PF05278_consen  127 YLECLCDIIQELQSTPLKELSESDLKEMIATLKDLESAKVKVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLELKK  206 (269)
T ss_pred             HHHHHHHHHHHHhcCcHhhhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444445555543322 13356678888999999999999999999999998876443   4445555555666677777


Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhHHHHHHHHHH
Q 037795          163 SEQSKITVELDHVVKEIKMLEESKAKLTSKNESEIAASKSKVDVGNENIQN  213 (227)
Q Consensus       163 ~e~skle~~l~e~er~I~eLe~~~~~~~~~~d~ei~~Lks~~~~~~e~~~~  213 (227)
                      .|+....++++..+..+.+++++....+.    .+++|+-+-..+.+.+..
T Consensus       207 ~ELe~~~EeL~~~Eke~~e~~~~i~e~~~----rl~~l~~~~~~l~k~~~~  253 (269)
T PF05278_consen  207 EELEELEEELKQKEKEVKEIKERITEMKG----RLGELEMESTRLSKTIKS  253 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence            88888888888888888877776544332    344444444444444333

>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []

Probab=95.22  E-value=0.26  Score=37.58  Aligned_cols=67  Identities=28%  Similarity=0.417  Sum_probs=46.8

Q ss_pred             HHHHHHH-hHHhHHHHHH-------HHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhH
Q 037795          133 CLSEMQS-IKEKHEQLQE-------QLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKNESEIAASKSKV  204 (227)
Q Consensus       133 RL~kLL~-lK~~~~~~~~-------~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~~d~ei~~Lks~~  204 (227)
                      ||++||. ||.....+..       ..++++-+|.....|+.       -+..++.+|+++-..++..=+.||++|+...
T Consensus         1 Rl~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~-------~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eL   73 (79)
T PF08581_consen    1 RLNELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQ-------QIRQKVYELEQAHRKMKQQYEEEIARLRREL   73 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7888886 7776666666       55555555555555544       4555577777777777778899999999877


Q ss_pred             HH
Q 037795          205 DV  206 (227)
Q Consensus       205 ~~  206 (227)
                      +.
T Consensus        74 e~   75 (79)
T PF08581_consen   74 EQ   75 (79)
T ss_dssp             CH
T ss_pred             Hh
Confidence            65

; PDB: 3VP9_B 3VP8_B.

>PRK11637 AmiB activator; Provisional

Probab=94.98  E-value=0.29  Score=46.51  Aligned_cols=28  Identities=4%  Similarity=0.012  Sum_probs=13.0

Q ss_pred             hhHHHhhhhhHHHHHHHHHHHHHhHHHh
Q 037795          194 ESEIAASKSKVDVGNENIQNAQLDFESV  221 (227)
Q Consensus       194 d~ei~~Lks~~~~~~e~~~~ae~eF~sv  221 (227)
                      +.+|..++.+....++.+...+..+...
T Consensus       102 ~~ei~~l~~eI~~~q~~l~~~~~~l~~r  129 (428)
T PRK11637        102 NKQIDELNASIAKLEQQQAAQERLLAAQ  129 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444443

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=93.09  E-value=2.8  Score=34.25  Aligned_cols=69  Identities=16%  Similarity=0.318  Sum_probs=44.8

Q ss_pred             HhCCCchhhhHHHHHHHHHhHHhHH----HHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 037795          121 ESHGFDVKTVHSCLSEMQSIKEKHE----QLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKL  189 (227)
Q Consensus       121 E~~GFdV~~l~sRL~kLL~lK~~~~----~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~  189 (227)
                      +..++|+..+..-|..||...++-.    .+.+.+..+...+...+....+++..+.+.++.+...+.+...+
T Consensus        27 ~~~~~~~~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l   99 (151)
T PF11559_consen   27 EESEDNDVRVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQL   99 (151)
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7788999999999999998665433    34445555555555666666666666666666666555544443

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=92.85  E-value=1.2  Score=41.35  Aligned_cols=108  Identities=20%  Similarity=0.173  Sum_probs=53.7

Q ss_pred             cccCCCchhhHHHHHHHHHHHHhCCCchhhhHHHHHHHHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHH
Q 037795          100 KLQVSDPTSIFNGMFEALLNLESHGFDVKTVHSCLSEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEI  179 (227)
Q Consensus       100 ~l~idD~~s~fe~~~~tl~~LE~~GFdV~~l~sRL~kLL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I  179 (227)
                      +.++++-...-+.|...+..|+..              -........+..+++++++...+...++..++.+..++++.|
T Consensus        15 ~~~~~~~~~E~~~Y~~fL~~l~~~--------------~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el   80 (314)
T PF04111_consen   15 DKQLEQAEKERDTYQEFLKKLEEE--------------SDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQEL   80 (314)
T ss_dssp             -----------------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc--------------CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555666666665511              112333445555666666666666666677777777777777


Q ss_pred             HHHHHHHHHHhhhh---hhHHHhhhhhHHHHHHHHHHHHHhHHHh
Q 037795          180 KMLEESKAKLTSKN---ESEIAASKSKVDVGNENIQNAQLDFESV  221 (227)
Q Consensus       180 ~eLe~~~~~~~~~~---d~ei~~Lks~~~~~~e~~~~ae~eF~sv  221 (227)
                      ..|+.+...+..++   +.+...++.+....+++.+.++.+++..
T Consensus        81 ~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~  125 (314)
T PF04111_consen   81 EELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYA  125 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777766664443   7777777777777777777777776654

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=92.14  E-value=2.6  Score=38.27  Aligned_cols=50  Identities=22%  Similarity=0.313  Sum_probs=26.1

Q ss_pred             HHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 037795          137 MQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESK  186 (227)
Q Consensus       137 LL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~  186 (227)
                      |-..+..++.+.+.+..++..+++...+.++++..++++..+|.-.+.++
T Consensus        33 l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl   82 (239)
T COG1579          33 LKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL   82 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444455555555555555555555555555555555555544

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=91.93  E-value=4.6  Score=35.24  Aligned_cols=101  Identities=14%  Similarity=0.168  Sum_probs=65.8

Q ss_pred             chhhhHHHHHHHHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhh----hhhhHHHhhh
Q 037795          126 DVKTVHSCLSEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTS----KNESEIAASK  201 (227)
Q Consensus       126 dV~~l~sRL~kLL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~----~~d~ei~~Lk  201 (227)
                      .|..|+..|..--+-|..........+.+++++.+..-+-.-+++.+..+++.-.+|.+.+..+..    +-+-...-|+
T Consensus        70 e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLE  149 (201)
T PF13851_consen   70 EVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLE  149 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555444444444444555556666666666666666666666666666666666555422    2277777888


Q ss_pred             hhHHHHHHHHHHHHHhHHHhHhhhC
Q 037795          202 SKVDVGNENIQNAQLDFESVAVCLG  226 (227)
Q Consensus       202 s~~~~~~e~~~~ae~eF~svaaa~~  226 (227)
                      ..+.++.+.+..-+.++..|++|.+
T Consensus       150 kKl~~l~~~lE~keaqL~evl~~~n  174 (201)
T PF13851_consen  150 KKLQALSEQLEKKEAQLNEVLAAAN  174 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            8899999999999999999888764

>PF15294 Leu_zip: Leucine zipper

Probab=91.51  E-value=9.1  Score=35.63  Aligned_cols=128  Identities=21%  Similarity=0.298  Sum_probs=78.3

Q ss_pred             HHHHHH-hcccCCCchhhHHHHHHHHHHHHhCCCchhh-------------hHHH-----HHH-HHHhHHhHHHHHHHHH
Q 037795           93 NVVEQT-SKLQVSDPTSIFNGMFEALLNLESHGFDVKT-------------VHSC-----LSE-MQSIKEKHEQLQEQLL  152 (227)
Q Consensus        93 ~l~e~v-~~l~idD~~s~fe~~~~tl~~LE~~GFdV~~-------------l~sR-----L~k-LL~lK~~~~~~~~~~k  152 (227)
                      ..+++- .+|++|.+...=..+.+..+.+|+.+|--..             +...     |++ ...++..-.++.+.++
T Consensus        70 ~qAek~~lkl~~diselEn~eLLe~i~~~E~~~~~~~~~~~~~~~~~KL~pl~e~g~~~ll~kEi~rLq~EN~kLk~rl~  149 (278)
T PF15294_consen   70 SQAEKWYLKLQTDISELENRELLEQIAEFEKQEFTSSFKPNQETSKPKLEPLNESGGSELLNKEIDRLQEENEKLKERLK  149 (278)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhhcccCCccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444 5677776666667799999999999886553             2122     333 3345555555666666


Q ss_pred             HHHHHHhhhhhhhhhhhhhhHHHHH----------------HHHHHHHHHHHHhhhhhhHHHhhhhhHHHHHHHHHHHHH
Q 037795          153 EYECHILEQTSEQSKITVELDHVVK----------------EIKMLEESKAKLTSKNESEIAASKSKVDVGNENIQNAQL  216 (227)
Q Consensus       153 ~le~~i~e~~~e~skle~~l~e~er----------------~I~eLe~~~~~~~~~~d~ei~~Lks~~~~~~e~~~~ae~  216 (227)
                      .++++...+-.|++++++.|.++..                .|..|+.+.+.++.+..+-+..+.+....+.+.+..+++
T Consensus       150 ~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~~~d~~~~~k~L~e~L~~~Kh  229 (278)
T PF15294_consen  150 SLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKALQDKESQQKALEETLQSCKH  229 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666655555566666666555544                345677777776665555555555566666666666666


Q ss_pred             hHHH
Q 037795          217 DFES  220 (227)
Q Consensus       217 eF~s  220 (227)
                      ++-.
T Consensus       230 elL~  233 (278)
T PF15294_consen  230 ELLR  233 (278)
T ss_pred             HHHh
Confidence            5543

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=91.43  E-value=5.1  Score=40.27  Aligned_cols=126  Identities=16%  Similarity=0.201  Sum_probs=68.9

Q ss_pred             HHHHhcccCCCchhh-HHHHHHHHHHHHhCCCchhhhHHHHHHHHHhHHh---HHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 037795           95 VEQTSKLQVSDPTSI-FNGMFEALLNLESHGFDVKTVHSCLSEMQSIKEK---HEQLQEQLLEYECHILEQTSEQSKITV  170 (227)
Q Consensus        95 ~e~v~~l~idD~~s~-fe~~~~tl~~LE~~GFdV~~l~sRL~kLL~lK~~---~~~~~~~~k~le~~i~e~~~e~skle~  170 (227)
                      .|+|..+--.+.... +..-++.|.-|+-    +..++..|..+..=+.+   -..+..++..++.++.+...+...+++
T Consensus       155 GE~I~~la~~~~~~~~l~~Ai~~LlGl~~----~~~L~~dl~~~~~~~~~~~~~~~~~~~~~~le~el~~l~~~~e~l~~  230 (650)
T TIGR03185       155 GEKIEALANPDRLASLLKEAIEVLLGLDL----IDRLAGDLTNVLRRRKKSELPSSILSEIEALEAELKEQSEKYEDLAQ  230 (650)
T ss_pred             HHHHHHHhccccchHHHHHHHHHHhCcHH----HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677777765333333 6666666554443    44455555554331100   112344555555555555555555555


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhh-------hhHHHhhhhhHHHHHHHHHHHHHhHHHhHhh
Q 037795          171 ELDHVVKEIKMLEESKAKLTSKN-------ESEIAASKSKVDVGNENIQNAQLDFESVAVC  224 (227)
Q Consensus       171 ~l~e~er~I~eLe~~~~~~~~~~-------d~ei~~Lks~~~~~~e~~~~ae~eF~svaaa  224 (227)
                      .+...+..+.+++.++..++..-       -.+..+++.....+++.....+.++...++.
T Consensus       231 ~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~~l~~~  291 (650)
T TIGR03185       231 EIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLRELAAD  291 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            55555555555555444443321       3334577778888888888888888776654

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PHA02562 46 endonuclease subunit; Provisional

Probab=91.37  E-value=3.5  Score=39.71  Aligned_cols=16  Identities=25%  Similarity=0.376  Sum_probs=6.0

Q ss_pred             HhHHHHHHHHHHHHHH
Q 037795          142 EKHEQLQEQLLEYECH  157 (227)
Q Consensus       142 ~~~~~~~~~~k~le~~  157 (227)
                      +....+..+.+.++..
T Consensus       306 d~i~~l~~~l~~l~~~  321 (562)
T PHA02562        306 DKLKELQHSLEKLDTA  321 (562)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333333333333333

>PRK11637 AmiB activator; Provisional

Probab=91.29  E-value=7.8  Score=36.89  Aligned_cols=28  Identities=18%  Similarity=0.336  Sum_probs=10.5

Q ss_pred             HhhhhhhhhhhhhhhHHHHHHHHHHHHH
Q 037795          158 ILEQTSEQSKITVELDHVVKEIKMLEES  185 (227)
Q Consensus       158 i~e~~~e~skle~~l~e~er~I~eLe~~  185 (227)
                      |...+.++..++.+++..+..|.+++.+
T Consensus        91 i~~~~~~i~~~~~ei~~l~~eI~~~q~~  118 (428)
T PRK11637         91 LRETQNTLNQLNKQIDELNASIAKLEQQ  118 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=90.70  E-value=7.2  Score=34.96  Aligned_cols=79  Identities=15%  Similarity=0.222  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhHHHHHHHHHHHHHhHHHhH
Q 037795          144 HEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKNESEIAASKSKVDVGNENIQNAQLDFESVA  222 (227)
Q Consensus       144 ~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~~d~ei~~Lks~~~~~~e~~~~ae~eF~sva  222 (227)
                      .....++.+.+...+.....++.++......+++.|.+++.....-...-...|..++.+...+...|.....+|+..+
T Consensus       211 ~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll  289 (312)
T PF00038_consen  211 LESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQELL  289 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Confidence            3445666777777788888888888888888888888888877777666688888888888888888888777777653

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=89.84  E-value=7.6  Score=39.84  Aligned_cols=144  Identities=15%  Similarity=0.218  Sum_probs=86.9

Q ss_pred             cCCchhhhhHHHHHHHH--HHHHHHHHHhcccCCCchhhHHHHHHHHHHHHhCCCchhhhHHHHHHHHHhH---------
Q 037795           73 DGSKDMYLEGLVTGYML--TFANVVEQTSKLQVSDPTSIFNGMFEALLNLESHGFDVKTVHSCLSEMQSIK---------  141 (227)
Q Consensus        73 ~~~~e~~REg~A~Glm~--tF~~l~e~v~~l~idD~~s~fe~~~~tl~~LE~~GFdV~~l~sRL~kLL~lK---------  141 (227)
                      -...++-|+.+|..+-.  .|-+-+++|-+   .-|.--.-.--+-..-+-=.|+.+....+...+=-.=+         
T Consensus       337 ~~~ddH~RDALAAA~kAY~~yk~kl~~vEr---~~~~~g~~~d~~rika~VIrG~~l~eal~~~~e~~~p~e~~~~~~~e  413 (652)
T COG2433         337 SVSDDHERDALAAAYKAYLAYKPKLEKVER---KLPELGIWKDVERIKALVIRGYPLAEALSKVKEEERPREKEGTEEEE  413 (652)
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHHHHH---hcccccchhhHHHHHHHeecCCcHHHHHHHHHhhhcccccccccccc
Confidence            33456789999887753  34444444332   11111011111122233345887777777666532211         


Q ss_pred             -HhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhh-------------hhHHHhhhhhHHHH
Q 037795          142 -EKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKN-------------ESEIAASKSKVDVG  207 (227)
Q Consensus       142 -~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~~-------------d~ei~~Lks~~~~~  207 (227)
                       -.-+.+...++++++.++..+.+.+.|+..+.++++.|.+|+.+++.++.+.             +.+|.+|+.....-
T Consensus       414 ~~ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~  493 (652)
T COG2433         414 RREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEK  493 (652)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence             1124466788899999999999999999999999999999999999875431             55555555555544


Q ss_pred             HHHHHHHHHhHH
Q 037795          208 NENIQNAQLDFE  219 (227)
Q Consensus       208 ~e~~~~ae~eF~  219 (227)
                      ...+.-.+.+|.
T Consensus       494 ~~~ve~L~~~l~  505 (652)
T COG2433         494 KKRVEELERKLA  505 (652)
T ss_pred             HHHHHHHHHHHH
Confidence            444444444443

>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []

Probab=89.51  E-value=4.8  Score=38.00  Aligned_cols=80  Identities=19%  Similarity=0.234  Sum_probs=55.6

Q ss_pred             chhhHHHHHHHHHHHHhCCCchhhhHHHHHHHHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHH
Q 037795          106 PTSIFNGMFEALLNLESHGFDVKTVHSCLSEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEES  185 (227)
Q Consensus       106 ~~s~fe~~~~tl~~LE~~GFdV~~l~sRL~kLL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~  185 (227)
                      ....++.+.+.+..++..+=-+=++..||..|-.|...-+..-..+..++.........+.+.+..|..++..+.+....
T Consensus       293 ~e~KI~eLy~~l~~~~~~~~~lP~lv~RL~tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~  372 (388)
T PF04912_consen  293 QESKIDELYEILPRWDPYAPSLPSLVERLKTLKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEKFKENMET  372 (388)
T ss_pred             chhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566677777777777777777777787777777777777777777777777777766666666666666665554443

It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex

>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length

Probab=89.40  E-value=5.6  Score=33.53  Aligned_cols=87  Identities=20%  Similarity=0.305  Sum_probs=53.2

Q ss_pred             HHhCCCchhhhHHHHHHHHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhHHHh
Q 037795          120 LESHGFDVKTVHSCLSEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKNESEIAA  199 (227)
Q Consensus       120 LE~~GFdV~~l~sRL~kLL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~~d~ei~~  199 (227)
                      +..||=+|..++++.+++   +..+..+..+++...++|......    .....++...|.+|+.+....+..-.++|..
T Consensus         8 m~~~gk~i~~~K~~~~~~---~~e~~~~k~ql~~~d~~i~~Lk~~----~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~   80 (155)
T PF06810_consen    8 MAENGKDIEAPKAKVDKV---KEERDNLKTQLKEADKQIKDLKKS----AKDNEELKKQIEELQAKNKTAKEEYEAKLAQ   80 (155)
T ss_pred             HHHccCcHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467888998899888887   444444444555555544444331    2255666777777777665555555666666


Q ss_pred             hhhhHHHHHHHHHHH
Q 037795          200 SKSKVDVGNENIQNA  214 (227)
Q Consensus       200 Lks~~~~~~e~~~~a  214 (227)
                      ++ -..+|+.++..+
T Consensus        81 ~~-~~~ai~~al~~a   94 (155)
T PF06810_consen   81 MK-KDSAIKSALKGA   94 (155)
T ss_pred             HH-HHHHHHHHHHHc
Confidence            66 355566666553

The function of this family is unknown.; GO: 0005198 structural molecule activity

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=89.04  E-value=9.5  Score=35.30  Aligned_cols=18  Identities=22%  Similarity=0.447  Sum_probs=10.7

Q ss_pred             hHHhHHHHHHHHHHHHHH
Q 037795          140 IKEKHEQLQEQLLEYECH  157 (227)
Q Consensus       140 lK~~~~~~~~~~k~le~~  157 (227)
                      ++..+..+..+...++..
T Consensus       182 l~~~~~~L~~e~~~Lk~~  199 (325)
T PF08317_consen  182 LRERKAELEEELENLKQL  199 (325)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            556666666666655554

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=88.73  E-value=15  Score=32.11  Aligned_cols=64  Identities=11%  Similarity=0.153  Sum_probs=35.5

Q ss_pred             CchhhhHHHHHHHHH-----hHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 037795          125 FDVKTVHSCLSEMQS-----IKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAK  188 (227)
Q Consensus       125 FdV~~l~sRL~kLL~-----lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~  188 (227)
                      -+...++.+++++|.     -......+..+....+.++........++...+......|.++++++..
T Consensus        34 ~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~  102 (302)
T PF10186_consen   34 EENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQ  102 (302)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345667777777666     4444444555555555555555555555555555555555555554444

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=87.84  E-value=7.6  Score=32.25  Aligned_cols=50  Identities=22%  Similarity=0.284  Sum_probs=22.8

Q ss_pred             HhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 037795          139 SIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAK  188 (227)
Q Consensus       139 ~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~  188 (227)
                      .||.......+....++.++...+....+++++|..+.+++..|+.++..
T Consensus         4 ~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~   53 (143)
T PF12718_consen    4 ALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDK   53 (143)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444444444444444444443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=87.48  E-value=16  Score=32.69  Aligned_cols=107  Identities=18%  Similarity=0.241  Sum_probs=67.7

Q ss_pred             hhHHHHHHHHHHHHhCCCchhhhHHHHHHHHHh-----HHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHH
Q 037795          108 SIFNGMFEALLNLESHGFDVKTVHSCLSEMQSI-----KEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKML  182 (227)
Q Consensus       108 s~fe~~~~tl~~LE~~GFdV~~l~sRL~kLL~l-----K~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eL  182 (227)
                      ..|.+|++....||..   -+.|...|+.+..-     ...+..+..++..+...|.....++.+++..++.....+.++
T Consensus        11 dRla~YIekVr~LE~~---N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~   87 (312)
T PF00038_consen   11 DRLASYIEKVRFLEQE---NKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDL   87 (312)
T ss_dssp             HHHHHHHHHHHHHHHH---HHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH---hhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHH
Confidence            3455666666666653   34455555554443     223555778888888888889999999999988888888888


Q ss_pred             HHHHHHHhh---hhhhHHHhhhhhHHHHHHHHHHHHHh
Q 037795          183 EESKAKLTS---KNESEIAASKSKVDVGNENIQNAQLD  217 (227)
Q Consensus       183 e~~~~~~~~---~~d~ei~~Lks~~~~~~e~~~~ae~e  217 (227)
                      +.+......   ....+|..|+..++...-...+.+.+
T Consensus        88 r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~  125 (312)
T PF00038_consen   88 RRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQ  125 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHH
Confidence            777665422   23666666666666555444444433

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=87.19  E-value=15  Score=34.04  Aligned_cols=63  Identities=17%  Similarity=0.197  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhh-------hhhHHHhhhhhHHHHHH
Q 037795          147 LQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSK-------NESEIAASKSKVDVGNE  209 (227)
Q Consensus       147 ~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~-------~d~ei~~Lks~~~~~~e  209 (227)
                      ...+....++.+.+.+.++..+++.+.++...+.+++.+++.+...       ...||.+||..++.++.
T Consensus       221 ~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~  290 (325)
T PF08317_consen  221 QKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEK  290 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            3333333333344444444444444444444444444444333211       15556666666655554

>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8

Probab=87.15  E-value=17  Score=30.76  Aligned_cols=122  Identities=17%  Similarity=0.203  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHHHHHhcccCCCch----------hhHHHHHHHHHHHHhC----CCchhhhHHHHHHHHHhHHhHHHH
Q 037795           82 GLVTGYMLTFANVVEQTSKLQVSDPT----------SIFNGMFEALLNLESH----GFDVKTVHSCLSEMQSIKEKHEQL  147 (227)
Q Consensus        82 g~A~Glm~tF~~l~e~v~~l~idD~~----------s~fe~~~~tl~~LE~~----GFdV~~l~sRL~kLL~lK~~~~~~  147 (227)
                      .++.-+.+.|.+.+..+.+.+-....          ...+-+++.+ .-|.|    ||-.- +---|..+..+-.+..++
T Consensus        53 ~~~~~~~~lf~ds~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~f-raQRN~YIsGf~Lf-L~l~I~r~~~li~~l~~~  130 (192)
T PF05529_consen   53 ILLAILLLLFLDSIRRMYKYSSEYEEAKDDHPNPDRTEDQVLAKKF-RAQRNMYISGFALF-LSLVIRRVHSLIKELIKL  130 (192)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhccccccCCCccchhHHHHHHHH-HHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            34445567778877777666332221          2333334443 34443    77543 222344444444455555


Q ss_pred             HHHHHHHHHHHhhhhhhhhh-hhhhhHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhHHHHHH
Q 037795          148 QEQLLEYECHILEQTSEQSK-ITVELDHVVKEIKMLEESKAKLTSKNESEIAASKSKVDVGNE  209 (227)
Q Consensus       148 ~~~~k~le~~i~e~~~e~sk-le~~l~e~er~I~eLe~~~~~~~~~~d~ei~~Lks~~~~~~e  209 (227)
                      ++..+.++++....+....+ .+++.+..+..|.+|+.++..    ++.++..||..++..++
T Consensus       131 ~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~----~~~~~~~LkkQ~~~l~~  189 (192)
T PF05529_consen  131 EEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEK----KEKEIEALKKQSEGLQK  189 (192)
T ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHh
Confidence            55556666654444433333 334445555556666654433    34444455555444443

Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=86.01  E-value=30  Score=34.50  Aligned_cols=49  Identities=8%  Similarity=0.272  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHhcc---cCCCchhhHHHHHHHHHHHHhCCCchhhh--HHHHHH
Q 037795           88 MLTFANVVEQTSKL---QVSDPTSIFNGMFEALLNLESHGFDVKTV--HSCLSE  136 (227)
Q Consensus        88 m~tF~~l~e~v~~l---~idD~~s~fe~~~~tl~~LE~~GFdV~~l--~sRL~k  136 (227)
                      |-.+...++.|.+|   +-++.+..|+++.....+|.+.||...++  -.+|..
T Consensus       207 ~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~  260 (569)
T PRK04778        207 LAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQD  260 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHH
Confidence            34455555555433   23456789999999999999999999874  444444

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=85.39  E-value=13  Score=37.82  Aligned_cols=90  Identities=21%  Similarity=0.256  Sum_probs=65.7

Q ss_pred             HHHHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhh------hhHHHhhhhhHHHHH
Q 037795          135 SEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKN------ESEIAASKSKVDVGN  208 (227)
Q Consensus       135 ~kLL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~~------d~ei~~Lks~~~~~~  208 (227)
                      .+|-.|+.....+.....+++..+...+.+..++..++.+.+....++++++...+.-.      +..|.+|+.-+++-.
T Consensus       328 ~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s~  407 (594)
T PF05667_consen  328 QELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEASE  407 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence            34666666666666666667777777777777777777777777777777766543321      788999999999999


Q ss_pred             HHHHHHHHhHHHhHhh
Q 037795          209 ENIQNAQLDFESVAVC  224 (227)
Q Consensus       209 e~~~~ae~eF~svaaa  224 (227)
                      +.+.....+++.+-+.
T Consensus       408 ~rl~~L~~qWe~~R~p  423 (594)
T PF05667_consen  408 QRLVELAQQWEKHRAP  423 (594)
T ss_pred             HHHHHHHHHHHHHHhH
Confidence            9999998888877544

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=85.34  E-value=10  Score=39.28  Aligned_cols=80  Identities=15%  Similarity=0.242  Sum_probs=47.9

Q ss_pred             hHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhh----------------------------
Q 037795          140 IKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTS----------------------------  191 (227)
Q Consensus       140 lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~----------------------------  191 (227)
                      +|....+++.+-+.++.++.+.+..+.+=++.+..+||++.+.+++++.+..                            
T Consensus       458 lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~  537 (697)
T PF09726_consen  458 LKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQ  537 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccc
Confidence            4444555555555666666666666665566666666666554444333100                            


Q ss_pred             -----------hhhhHHHhhhhhHHHHHHHHHHHHHhHH
Q 037795          192 -----------KNESEIAASKSKVDVGNENIQNAQLDFE  219 (227)
Q Consensus       192 -----------~~d~ei~~Lks~~~~~~e~~~~ae~eF~  219 (227)
                                 .++.||-+|..+...-++.|..+|.+.+
T Consensus       538 e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~  576 (697)
T PF09726_consen  538 ECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQ  576 (697)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       1267777777777777888877777664

; GO: 0016021 integral to membrane

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=85.26  E-value=18  Score=31.54  Aligned_cols=107  Identities=15%  Similarity=0.196  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHhCCCchhhhHHHHHHHHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhh
Q 037795          112 GMFEALLNLESHGFDVKTVHSCLSEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTS  191 (227)
Q Consensus       112 ~~~~tl~~LE~~GFdV~~l~sRL~kLL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~  191 (227)
                      .+-++|.++..+=-|++.  .=|.-.-++|+..+.+...-...++.+.+...+..++.+-+...+....+|+.++.--..
T Consensus         6 ~He~af~~iK~YYndIT~--~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~k   83 (201)
T PF13851_consen    6 NHEKAFQEIKNYYNDITL--NNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEK   83 (201)
T ss_pred             HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556655555444442  334444556666666655556666678888888888888888777777777777665211


Q ss_pred             ----------h---hhhHHHhhhhhHHHHHHHHHHHHHhHHH
Q 037795          192 ----------K---NESEIAASKSKVDVGNENIQNAQLDFES  220 (227)
Q Consensus       192 ----------~---~d~ei~~Lks~~~~~~e~~~~ae~eF~s  220 (227)
                                .   ...+|..|+.+-+...+.|.-++.|...
T Consensus        84 dK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~Erde  125 (201)
T PF13851_consen   84 DKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDE  125 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      1   1777777777777777777766665543

>TIGR00606 rad50 rad50

Probab=84.88  E-value=12  Score=40.83  Aligned_cols=32  Identities=19%  Similarity=0.307  Sum_probs=12.6

Q ss_pred             HHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHH
Q 037795          152 LEYECHILEQTSEQSKITVELDHVVKEIKMLE  183 (227)
Q Consensus       152 k~le~~i~e~~~e~skle~~l~e~er~I~eLe  183 (227)
                      ..++..+.+...+...+...+.+++..|..++
T Consensus       884 ~~le~~L~el~~el~~l~~~~~~~~~~~~~~~  915 (1311)
T TIGR00606       884 QQFEEQLVELSTEVQSLIREIKDAKEQDSPLE  915 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            33333344444444444444333333333333

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>smart00787 Spc7 Spc7 kinetochore protein

Probab=84.78  E-value=8.3  Score=36.05  Aligned_cols=18  Identities=17%  Similarity=0.471  Sum_probs=7.9

Q ss_pred             hHHhHHHHHHHHHHHHHH
Q 037795          140 IKEKHEQLQEQLLEYECH  157 (227)
Q Consensus       140 lK~~~~~~~~~~k~le~~  157 (227)
                      +++.+..+..+...++..
T Consensus       177 l~~~~~~L~~e~~~L~~~  194 (312)
T smart00787      177 LRDRKDALEEELRQLKQL  194 (312)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            444444444444444443

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=84.56  E-value=24  Score=30.82  Aligned_cols=72  Identities=17%  Similarity=0.172  Sum_probs=43.4

Q ss_pred             HhCCCchhhhHHHHHHH-----------HHhHHhHHHHHHHHHHHHHH--------HhhhhhhhhhhhhhhHHHHHHHHH
Q 037795          121 ESHGFDVKTVHSCLSEM-----------QSIKEKHEQLQEQLLEYECH--------ILEQTSEQSKITVELDHVVKEIKM  181 (227)
Q Consensus       121 E~~GFdV~~l~sRL~kL-----------L~lK~~~~~~~~~~k~le~~--------i~e~~~e~skle~~l~e~er~I~e  181 (227)
                      ..|-=+|++++.+|.+.           -.......+..++++.+++-        -.+....++.++..+.+.+++|..
T Consensus        64 ~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~  143 (194)
T PF15619_consen   64 QRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQE  143 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555677777777662           11222222333444444432        234556677888888899999999


Q ss_pred             HHHHHHHHhhh
Q 037795          182 LEESKAKLTSK  192 (227)
Q Consensus       182 Le~~~~~~~~~  192 (227)
                      |+.++......
T Consensus       144 Lek~leL~~k~  154 (194)
T PF15619_consen  144 LEKQLELENKS  154 (194)
T ss_pred             HHHHHHHHhhH
Confidence            98887775443

>PHA02562 46 endonuclease subunit; Provisional

Probab=84.49  E-value=9.6  Score=36.73  Aligned_cols=14  Identities=0%  Similarity=-0.273  Sum_probs=6.9

Q ss_pred             CCCccccCCchhhh
Q 037795           67 PHFNLLDGSKDMYL   80 (227)
Q Consensus        67 PHF~pL~~~~e~~R   80 (227)
                      ..|.|+....+.=|
T Consensus       139 ~~f~~f~~~~~~er  152 (562)
T PHA02562        139 AGYVPFMQLSAPAR  152 (562)
T ss_pred             CchhhHhcCChHhH
Confidence            44556555444433

>COG1561 Uncharacterized stress-induced protein [Function unknown]

Probab=83.92  E-value=30  Score=32.52  Aligned_cols=19  Identities=21%  Similarity=0.302  Sum_probs=15.4

Q ss_pred             HHhhhhhHHHHHHHHHHHH
Q 037795          197 IAASKSKVDVGNENIQNAQ  215 (227)
Q Consensus       197 i~~Lks~~~~~~e~~~~ae  215 (227)
                      ...||+-.+++-|++||.|
T Consensus       272 ~vElK~~IEqmREQVQNiE  290 (290)
T COG1561         272 VVELKVLIEQMREQVQNIE  290 (290)
T ss_pred             HHHHHHHHHHHHHHHhcCC
Confidence            3568899999999999864

>smart00787 Spc7 Spc7 kinetochore protein

Probab=83.85  E-value=27  Score=32.68  Aligned_cols=53  Identities=15%  Similarity=0.171  Sum_probs=26.5

Q ss_pred             HhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhh-------hhhHHHhhhhhHHHHHHH
Q 037795          158 ILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSK-------NESEIAASKSKVDVGNEN  210 (227)
Q Consensus       158 i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~-------~d~ei~~Lks~~~~~~e~  210 (227)
                      +.+.+.+++.+...|.+...++.+++.+++.+...       .-.||.+|+..++.++..
T Consensus       227 l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~l  286 (312)
T smart00787      227 LEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSL  286 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444444444443221       156666666666666554

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>TIGR00255 conserved hypothetical protein TIGR00255

Probab=83.84  E-value=24  Score=32.73  Aligned_cols=39  Identities=5%  Similarity=0.032  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHHHhcccCCCchhhHHHHHHHHHHHHhC
Q 037795           85 TGYMLTFANVVEQTSKLQVSDPTSIFNGMFEALLNLESH  123 (227)
Q Consensus        85 ~Glm~tF~~l~e~v~~l~idD~~s~fe~~~~tl~~LE~~  123 (227)
                      --+..+|...++....++..--.....++..-+..|+..
T Consensus       131 ~~l~~al~~AL~~l~~mR~~EG~~L~~dl~~rl~~i~~~  169 (291)
T TIGR00255       131 ALILGALEEALLDFINMREFEGENLKSDIVQRLDLIERE  169 (291)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566777777777777777777777776666666654

The apparent ortholog from Aquifex aeolicus as reported is split into two consecutive reading frames.

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=82.61  E-value=10  Score=34.01  Aligned_cols=58  Identities=22%  Similarity=0.316  Sum_probs=32.1

Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhHHHHHHHHHHHHHhHHHhHhh
Q 037795          163 SEQSKITVELDHVVKEIKMLEESKAKLTSKNESEIAASKSKVDVGNENIQNAQLDFESVAVC  224 (227)
Q Consensus       163 ~e~skle~~l~e~er~I~eLe~~~~~~~~~~d~ei~~Lks~~~~~~e~~~~ae~eF~svaaa  224 (227)
                      .++..+.+.+.+.+..|..|.+    .+..++.+..+|+.++..+.+....++-+...++++
T Consensus        75 eEk~~Le~e~~e~~~~i~~l~e----e~~~ke~Ea~~lq~el~~ar~~~~~ak~~L~~~~~~  132 (246)
T PF00769_consen   75 EEKEQLEQELREAEAEIARLEE----ESERKEEEAEELQEELEEAREDEEEAKEELLEVMSA  132 (246)
T ss_dssp             ------HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3334444444444444444333    244458888999999999999888888887666554

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=81.55  E-value=19  Score=32.38  Aligned_cols=65  Identities=15%  Similarity=0.186  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhh---hhHHHhhhhhHHHHHHH
Q 037795          146 QLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKN---ESEIAASKSKVDVGNEN  210 (227)
Q Consensus       146 ~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~~---d~ei~~Lks~~~~~~e~  210 (227)
                      .+..++..|...=..|..++..|.+.+.++|..|.+.+.+....+..-   ..++..|+..++.+-.+
T Consensus        36 e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e  103 (230)
T PF10146_consen   36 EYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE  103 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444555555556666677788888889998888888766654432   44677777666666555

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>PRK09039 hypothetical protein; Validated

Probab=81.13  E-value=49  Score=31.12  Aligned_cols=20  Identities=15%  Similarity=0.170  Sum_probs=9.2

Q ss_pred             HHHHHhcccCCCchhhHHHH
Q 037795           94 VVEQTSKLQVSDPTSIFNGM  113 (227)
Q Consensus        94 l~e~v~~l~idD~~s~fe~~  113 (227)
                      ++--+..-+++.-...+..+
T Consensus        39 ~~q~fLs~~i~~~~~eL~~L   58 (343)
T PRK09039         39 VAQFFLSREISGKDSALDRL   58 (343)
T ss_pred             HHHHHHHHHHhhHHHHHHHH
Confidence            34444444444444444444

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=80.94  E-value=25  Score=30.65  Aligned_cols=50  Identities=18%  Similarity=0.195  Sum_probs=22.4

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHhhh---hhhHHHhhhhhHHHHHHHHHHHHHhH
Q 037795          169 TVELDHVVKEIKMLEESKAKLTSK---NESEIAASKSKVDVGNENIQNAQLDF  218 (227)
Q Consensus       169 e~~l~e~er~I~eLe~~~~~~~~~---~d~ei~~Lks~~~~~~e~~~~ae~eF  218 (227)
                      +++.+++|.+|.+|++++..++..   .+..--...+++.....++..++.+.
T Consensus       123 ~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~  175 (190)
T PF05266_consen  123 EAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEI  175 (190)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444455555555554444433   23344444444444444444444433

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=80.90  E-value=33  Score=35.37  Aligned_cols=111  Identities=11%  Similarity=0.150  Sum_probs=70.7

Q ss_pred             hhhHHHHHHHHHHHHhCCCchhhhHHHHHHHHHhHHhHHH-------------HHHHHHHHHHHHhhhhhhhhhhhhhhH
Q 037795          107 TSIFNGMFEALLNLESHGFDVKTVHSCLSEMQSIKEKHEQ-------------LQEQLLEYECHILEQTSEQSKITVELD  173 (227)
Q Consensus       107 ~s~fe~~~~tl~~LE~~GFdV~~l~sRL~kLL~lK~~~~~-------------~~~~~k~le~~i~e~~~e~skle~~l~  173 (227)
                      ...++++...+++++..-=.|+.+.-||.++.+...-..+             ..+..++|...-......++.++..++
T Consensus       127 k~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~le~ki~  206 (629)
T KOG0963|consen  127 KEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEELEKKIS  206 (629)
T ss_pred             HHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456666667777887888888888888886654333332             233444555544455555667777788


Q ss_pred             HHHHHHHHHHHHHHHHhhhh-------hhHHHhhhhhHHHHHHHHHHHHHh
Q 037795          174 HVVKEIKMLEESKAKLTSKN-------ESEIAASKSKVDVGNENIQNAQLD  217 (227)
Q Consensus       174 e~er~I~eLe~~~~~~~~~~-------d~ei~~Lks~~~~~~e~~~~ae~e  217 (227)
                      .+.++|..-+.++..++.+-       -++|.-...+++.+++.+..++.+
T Consensus       207 ~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e  257 (629)
T KOG0963|consen  207 SLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLERE  257 (629)
T ss_pred             HHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888877777777776662       445555555566666666655554

>PRK10869 recombination and repair protein; Provisional

Probab=80.18  E-value=47  Score=33.19  Aligned_cols=67  Identities=18%  Similarity=0.253  Sum_probs=42.9

Q ss_pred             HHhCCCch---hhhHHHHHHHHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 037795          120 LESHGFDV---KTVHSCLSEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESK  186 (227)
Q Consensus       120 LE~~GFdV---~~l~sRL~kLL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~  186 (227)
                      ++..-||.   ..+..||..|-.||..|..-.++.....+++...-..+...+..+.+++.++.+++.++
T Consensus       288 ~~~~~~dp~~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l  357 (553)
T PRK10869        288 LDRLDLDPNRLAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQA  357 (553)
T ss_pred             HhhcCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Confidence            34456666   67788999999999988865555555555555555555555555555555555555543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	227
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 1e-05
 Identities = 40/245 (16%), Positives = 72/245 (29%), Gaps = 71/245 (28%)

Query: 1   FVNNGDAVN-QWNEINGRLEISTECAVNASTSNESTPEE------NWSLPFVKHSSILRA 53
           FV     +N ++  +     I TE      +       E      N +  F K++ + R 
Sbjct: 82  FVEEVLRINYKF--LMSP--IKTEQ--RQPSMMTRMYIEQRDRLYNDNQVFAKYN-VSR- 133

Query: 54  IEPMGVFQKMPQKPHFNLLDGSKDMYLEGLVTGYML-----TFANVVEQTSKLQVSDPTS 108
           ++P    ++   +     L  +K++ ++G     +L       A  V  + K+Q      
Sbjct: 134 LQPYLKLRQALLE-----LRPAKNVLIDG-----VLGSGKTWVALDVCLSYKVQCKMDFK 183

Query: 109 IF----------NGMFEALLNLESHGFDVKTVHSCLSEMQSIKEKHEQLQEQLLEY---- 154
           IF            + E L  L  +  D     S      +IK +   +Q +L       
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKL-LYQID-PNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241

Query: 155 -----------------------ECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTS 191
                                   C IL  T  +             I +   S   LT 
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT-LT- 299

Query: 192 KNESE 196
            +E +
Sbjct: 300 PDEVK 304

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	227
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	92.81
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	92.71
3vp9_A	92	General transcriptional corepressor TUP1; four hel	89.84
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	89.34
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	89.12
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	88.06
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	87.6
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	87.54
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	86.35
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	85.23
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	85.12
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	84.84
3uul_A	118	Utrophin; spectrin repeat, structural protein, cyt	84.75
3gp4_A	142	Transcriptional regulator, MERR family; structural	82.38
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	82.1
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	82.0
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	80.74
3uun_A	119	Dystrophin; triple helical, cell structure and sta	80.63
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	80.6
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	80.19
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	80.05

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=92.81  E-value=1.6  Score=37.52  Aligned_cols=47  Identities=17%  Similarity=0.149  Sum_probs=22.0

Q ss_pred             hHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 037795          140 IKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESK  186 (227)
Q Consensus       140 lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~  186 (227)
                      +.+....+.+....++..+.+...+..+++..+++....|...+.++
T Consensus        37 le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l   83 (256)
T 3na7_A           37 ALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKM   83 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444455555555555555444444

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=92.71  E-value=1.6  Score=35.17  Aligned_cols=68  Identities=12%  Similarity=0.067  Sum_probs=37.4

Q ss_pred             HHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhh---hhHHHhhhhhH
Q 037795          137 MQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKN---ESEIAASKSKV  204 (227)
Q Consensus       137 LL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~~---d~ei~~Lks~~  204 (227)
                      -|-|=+.+-++..+...++..+.+...+...+++++.....++.++++++..++.+.   ..+|.+|+++.
T Consensus        63 ALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~  133 (138)
T 3hnw_A           63 YLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETEL  133 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555555555555566666666666666666666666555544432   44455555443

>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A

Probab=89.84  E-value=0.44  Score=36.47  Aligned_cols=76  Identities=20%  Similarity=0.281  Sum_probs=39.4

Q ss_pred             chhhhHHHHHHHHH-hHHhHHHHHHH--------HHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhH
Q 037795          126 DVKTVHSCLSEMQS-IKEKHEQLQEQ--------LLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKNESE  196 (227)
Q Consensus       126 dV~~l~sRL~kLL~-lK~~~~~~~~~--------~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~~d~e  196 (227)
                      ++.+...||++||. ||.....+..+        .++++-+|.....|+..+...       +.+|+++-.++|..=+.|
T Consensus         4 ~~~~~~~Rl~ELLD~ir~Efe~~~~e~~~~k~q~~~eyE~ki~~Qi~Emq~Ir~t-------vyeLE~~h~kmKq~YEeE   76 (92)
T 3vp9_A            4 SVSNTQNKLNELLDAIRQEFLQVSQEANTYRLQNQKDYDFKMNQQLAEMQQIRNT-------VYERELTHRKMKDAYEEE   76 (92)
T ss_dssp             -------------CCTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred             CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence            34455679999987 55444332222        246777777666666555544       666666666677777899


Q ss_pred             HHhhhhhHHHHH
Q 037795          197 IAASKSKVDVGN  208 (227)
Q Consensus       197 i~~Lks~~~~~~  208 (227)
                      |++|+.+.+.-.
T Consensus        77 I~rLr~eLe~r~   88 (92)
T 3vp9_A           77 IKHLKLGLEQRD   88 (92)
T ss_dssp             HHHHHHHHTC--
T ss_pred             HHHHHHHHHHcC
Confidence            999998877543

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=89.34  E-value=5.5  Score=30.13  Aligned_cols=81  Identities=19%  Similarity=0.258  Sum_probs=58.7

Q ss_pred             HHHHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhh----------hhhHHHhhhhhH
Q 037795          135 SEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSK----------NESEIAASKSKV  204 (227)
Q Consensus       135 ~kLL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~----------~d~ei~~Lks~~  204 (227)
                      .||..+|....+..+....++.++...+....+++.++..+.++|..++.++......          .++.....++++
T Consensus         9 kKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev   88 (101)
T 3u1c_A            9 KKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEV   88 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3477888888888888888888888888888899999999999998888876664322          134444455566


Q ss_pred             HHHHHHHHHHH
Q 037795          205 DVGNENIQNAQ  215 (227)
Q Consensus       205 ~~~~e~~~~ae  215 (227)
                      .+++-.|+-.+
T Consensus        89 ~~L~RriqllE   99 (101)
T 3u1c_A           89 ASLNRRIQLVE   99 (101)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHc
Confidence            66666555443

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=89.12  E-value=5.1  Score=30.07  Aligned_cols=81  Identities=19%  Similarity=0.201  Sum_probs=59.4

Q ss_pred             HHHHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhh----------hhhHHHhhhhhH
Q 037795          135 SEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSK----------NESEIAASKSKV  204 (227)
Q Consensus       135 ~kLL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~----------~d~ei~~Lks~~  204 (227)
                      .||..+|....+..+....++.++...+....+++.++..+.++|..++.++......          ..+.....+++|
T Consensus         9 kKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~ev   88 (101)
T 3u59_A            9 KKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEV   88 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3478888899999999999999999999999999999999999999888876654222          133344445556


Q ss_pred             HHHHHHHHHHH
Q 037795          205 DVGNENIQNAQ  215 (227)
Q Consensus       205 ~~~~e~~~~ae  215 (227)
                      .+++-.|+-++
T Consensus        89 asLnRriqllE   99 (101)
T 3u59_A           89 ASLNRRIQLVE   99 (101)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHc
Confidence            66666555443

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=88.06  E-value=3.5  Score=42.75  Aligned_cols=21  Identities=5%  Similarity=0.022  Sum_probs=9.6

Q ss_pred             hHHHhhhhhHHHHHHHHHHHH
Q 037795          195 SEIAASKSKVDVGNENIQNAQ  215 (227)
Q Consensus       195 ~ei~~Lks~~~~~~e~~~~ae  215 (227)
                      ..++.|+++...+.+++.+++
T Consensus      1023 ~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A         1023 QLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=87.60  E-value=2.7  Score=31.18  Aligned_cols=71  Identities=18%  Similarity=0.276  Sum_probs=54.7

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHH---HhhhhhhHHHhhhhhHHHHHHHHHHHHHhHHHh
Q 037795          151 LLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAK---LTSKNESEIAASKSKVDVGNENIQNAQLDFESV  221 (227)
Q Consensus       151 ~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~---~~~~~d~ei~~Lks~~~~~~e~~~~ae~eF~sv  221 (227)
                      +..|..+|...+.++.++..+++.+.-.+..++.+...   ++.....+|..|+..++.+.=...+.+.+.++.
T Consensus         2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL   75 (86)
T 3swk_A            2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESL   75 (86)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            35677888888999999999988888888877665544   344458899999999988877777777777665

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=87.54  E-value=13  Score=31.84  Aligned_cols=83  Identities=14%  Similarity=0.062  Sum_probs=42.9

Q ss_pred             CCCchhhhHHHHHHHHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhHHHhhhh
Q 037795          123 HGFDVKTVHSCLSEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKNESEIAASKS  202 (227)
Q Consensus       123 ~GFdV~~l~sRL~kLL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~~d~ei~~Lks  202 (227)
                      .|-|-+-+..--.++=.++.....+.++...+.+++.........+++.+.+.+..+.+++.++......-++++..+..
T Consensus        85 ~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~  164 (256)
T 3na7_A           85 EIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFK  164 (256)
T ss_dssp             HCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555666666666666666666655555555555555555555444444433333333444444443


Q ss_pred             hHH
Q 037795          203 KVD  205 (227)
Q Consensus       203 ~~~  205 (227)
                      .-+
T Consensus       165 ~r~  167 (256)
T 3na7_A          165 KKE  167 (256)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            333

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=86.35  E-value=10  Score=34.42  Aligned_cols=106  Identities=10%  Similarity=0.107  Sum_probs=61.9

Q ss_pred             HHHHHHHhCCCchhhh----HHHHHHHHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHh
Q 037795          115 EALLNLESHGFDVKTV----HSCLSEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLT  190 (227)
Q Consensus       115 ~tl~~LE~~GFdV~~l----~sRL~kLL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~  190 (227)
                      ..+...-..+-++...    +.+++++|.=-....+..+-..-++++|.+-..-..+++..-..--+...-|+..+.+.+
T Consensus       359 ~~~~~vl~G~~t~eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (471)
T 3mq9_A          359 TAVINAASGRQTVDEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEK  438 (471)
T ss_dssp             HHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHH
Confidence            3444444444454433    333333433222222333444445555555555555555555555566666666666666


Q ss_pred             hhhhhHHHhhhhhHHHHHHHHHHHHHhHHH
Q 037795          191 SKNESEIAASKSKVDVGNENIQNAQLDFES  220 (227)
Q Consensus       191 ~~~d~ei~~Lks~~~~~~e~~~~ae~eF~s  220 (227)
                      ++-.+.|-.|+.++...+..+++++.+-+.
T Consensus       439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (471)
T 3mq9_A          439 AQGQKKVEELEGEITTLNHKLQDASAEVER  468 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            665778889999999999999988877553

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=85.23  E-value=5.7  Score=28.71  Aligned_cols=56  Identities=20%  Similarity=0.200  Sum_probs=45.6

Q ss_pred             HHHHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHh
Q 037795          135 SEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLT  190 (227)
Q Consensus       135 ~kLL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~  190 (227)
                      .|+..+|.......+....++.++.+.+....+++.++..+.++|..++.++....
T Consensus         6 kKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~e   61 (81)
T 1ic2_A            6 KKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYS   61 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            35778888888888888888888888888888889998888888888888655543

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=84.84  E-value=7.6  Score=31.08  Aligned_cols=69  Identities=17%  Similarity=0.195  Sum_probs=49.0

Q ss_pred             CCchhhhHHHH---HHHHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 037795          124 GFDVKTVHSCL---SEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSK  192 (227)
Q Consensus       124 GFdV~~l~sRL---~kLL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~  192 (227)
                      |.+-.++..-|   .+|+.++.....+..+++.+++.+.+...++..+...+++..+.+.+|+++...+..+
T Consensus        54 ~~~r~aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~  125 (138)
T 3hnw_A           54 SAELRTDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKN  125 (138)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444   4588888888888888888888888888887777777777777777777766665444

>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A

Probab=84.75  E-value=7.4  Score=28.03  Aligned_cols=51  Identities=8%  Similarity=-0.012  Sum_probs=39.9

Q ss_pred             hhhHHHHHHHHHHHHhCCCchhhhHHHHHHHHHhHHhHHHHHHHHHHHHHH
Q 037795          107 TSIFNGMFEALLNLESHGFDVKTVHSCLSEMQSIKEKHEQLQEQLLEYECH  157 (227)
Q Consensus       107 ~s~fe~~~~tl~~LE~~GFdV~~l~sRL~kLL~lK~~~~~~~~~~k~le~~  157 (227)
                      ..|+...-..+...+..|-|+..++..|.+.-.|...-.........+...
T Consensus        15 ~~WL~e~e~~l~~~~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~v~~~   65 (118)
T 3uul_A           15 LTWLLSAEDTFQEQDDISDDVEDVKEQFATHETFMMELSAHQSSVGSVLQA   65 (118)
T ss_dssp             HHHHHHHHHHHHTSCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467777767777777789999999999999888888877777776666554

>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}

Probab=82.38  E-value=12  Score=29.45  Aligned_cols=23  Identities=9%  Similarity=0.164  Sum_probs=15.8

Q ss_pred             HHHHHHHHhCCCchhhhHHHHHH
Q 037795          114 FEALLNLESHGFDVKTVHSCLSE  136 (227)
Q Consensus       114 ~~tl~~LE~~GFdV~~l~sRL~k  136 (227)
                      +..+..|...||.+..++.-|..
T Consensus        49 l~~I~~lr~~G~sL~eIk~~l~~   71 (142)
T 3gp4_A           49 ILFTRQMRRAGLSIEALIDYLAL   71 (142)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHH
Confidence            34556677889988887765543

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=82.10  E-value=21  Score=29.80  Aligned_cols=76  Identities=11%  Similarity=0.191  Sum_probs=52.3

Q ss_pred             hHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhh---hhHHHhhhhhHHHHHHHHHHHH
Q 037795          140 IKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKN---ESEIAASKSKVDVGNENIQNAQ  215 (227)
Q Consensus       140 lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~~---d~ei~~Lks~~~~~~e~~~~ae  215 (227)
                      +.+.+..+..+.-.++..+.......++-.+.+.+++..|..|+.++.+++...   -.+.-+|.-.+...+.++.+.+
T Consensus        60 L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e  138 (168)
T 3o0z_A           60 LENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE  138 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            444555555556666666666666677888888889999999999888876653   5555566666666666666666

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=82.00  E-value=14  Score=34.28  Aligned_cols=15  Identities=20%  Similarity=0.321  Sum_probs=5.3

Q ss_pred             HHHHHHHHHHhcccC
Q 037795           89 LTFANVVEQTSKLQV  103 (227)
Q Consensus        89 ~tF~~l~e~v~~l~i  103 (227)
                      .-|..+...+.+++.
T Consensus       405 ~~~l~~~~~~~~~~~  419 (597)
T 3oja_B          405 LQYIALTSVVEKVQR  419 (597)
T ss_dssp             HHHHHHHHHHHTC--
T ss_pred             HHHhhHHHHhhcccc
Confidence            333444444444433

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=80.74  E-value=16  Score=30.18  Aligned_cols=77  Identities=9%  Similarity=0.168  Sum_probs=43.1

Q ss_pred             HHHHHhHHhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhh----hhHHHhhhhhHHHHHHH
Q 037795          135 SEMQSIKEKHEQLQEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKN----ESEIAASKSKVDVGNEN  210 (227)
Q Consensus       135 ~kLL~lK~~~~~~~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~~----d~ei~~Lks~~~~~~e~  210 (227)
                      ..+-.|+...+.+..+.+.++..+.++..-...+..++..+......+++++..+..+.    +-=+.+...+|+..|++
T Consensus        68 ~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~qEAe~MN~a  147 (152)
T 3a7p_A           68 NTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKTEKETEAMNSE  147 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34555666666666677777766666666666666665555555555555555554432    33344555566666665


Q ss_pred             H
Q 037795          211 I  211 (227)
Q Consensus       211 ~  211 (227)
                      .
T Consensus       148 n  148 (152)
T 3a7p_A          148 I  148 (152)
T ss_dssp             -
T ss_pred             c
Confidence            5

>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}

Probab=80.63  E-value=13  Score=26.51  Aligned_cols=53  Identities=11%  Similarity=-0.040  Sum_probs=41.5

Q ss_pred             CchhhHHHHHHHHHHHHhCCCchhhhHHHHHHHHHhHHhHHHHHHHHHHHHHH
Q 037795          105 DPTSIFNGMFEALLNLESHGFDVKTVHSCLSEMQSIKEKHEQLQEQLLEYECH  157 (227)
Q Consensus       105 D~~s~fe~~~~tl~~LE~~GFdV~~l~sRL~kLL~lK~~~~~~~~~~k~le~~  157 (227)
                      +-..|+.+.-..+...+..|-|+..++..|.+.-.|.............+...
T Consensus        13 el~~WL~~~e~~l~~~~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~~~~~   65 (119)
T 3uun_A           13 EVLSWLLSAEDTLQAQGEISNDVEVVKDQFHTHEGYMMDLTAHQGRVGNILQL   65 (119)
T ss_dssp             HHHHHHHHHHHHHHHHCSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            34567777777788888889999999999999888888877777666666554

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=80.60  E-value=16  Score=37.83  Aligned_cols=61  Identities=13%  Similarity=0.114  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhHHHHH
Q 037795          148 QEQLLEYECHILEQTSEQSKITVELDHVVKEIKMLEESKAKLTSKNESEIAASKSKVDVGN  208 (227)
Q Consensus       148 ~~~~k~le~~i~e~~~e~skle~~l~e~er~I~eLe~~~~~~~~~~d~ei~~Lks~~~~~~  208 (227)
                      ...++.+++++.+.+.+..++..+.+..+.++.++++.+........+++..|+..++.++
T Consensus       983 ~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A          983 TNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444444444444444333333334555566665555555

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=80.19  E-value=8.6  Score=35.62  Aligned_cols=23  Identities=4%  Similarity=0.202  Sum_probs=10.2

Q ss_pred             hhHHHhhhhhHHHHHHHHHHHHH
Q 037795          194 ESEIAASKSKVDVGNENIQNAQL  216 (227)
Q Consensus       194 d~ei~~Lks~~~~~~e~~~~ae~  216 (227)
                      ...+.+++.+...+.++++..+.
T Consensus       557 ~~~~~~l~~e~~~~~~~~~~l~~  579 (597)
T 3oja_B          557 RAKQAELRQETSLKRQKVKQLEA  579 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444433

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=80.05  E-value=6.7  Score=38.29  Aligned_cols=19  Identities=5%  Similarity=0.137  Sum_probs=12.1

Q ss_pred             hhHHHhhhhhHHHHHHHHH
Q 037795          194 ESEIAASKSKVDVGNENIQ  212 (227)
Q Consensus       194 d~ei~~Lks~~~~~~e~~~  212 (227)
                      -.+|-+|++++++--.+|+
T Consensus       144 ~~kIQRLEvDIdiqirsCK  162 (562)
T 3ghg_A          144 LVDMKRLEVDIDIKIRSCR  162 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHHHHhcc
Confidence            5566666666666666664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00