Citrus Sinensis ID: 037816

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------65
Protein Sequence
MKSKWVFLKLNSNFPFCSSLVSPFITKIIQDPTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH
Secondary Structure (PSIPRED)
cccHHHccccccccccHHHHHHHHHHccccccHHHcccccccccccHHHHHHHHHcccccccHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHccccccccccHHHHHHHHHcccccHHHHHHHHHHHHcccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccHHHHHHHHcccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHcccccccEEEHHHHHHHHHcccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEHHHHHHHHccccHHHHHHHHccccccccEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHHHHHcHHcccccccccHHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHccccccccEEEEEEccEEEEEEccccccccHHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccEHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccEEEEEEccEEEEEEEcccccccHHHHHHHHHHHHHHHHHccccccccEEcc
Coil and Loop (DISEMBL)
MKSKWVFLKlnsnfpfcsslvspfitkiiqdptsstsklvldnYVDISRLLSISakeghfhlgpslhasfiktfepfdnqnvynvpnATVIWNSLLSFYLKCDQMRNAvklfddmpmrdtvSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYfkcgssssgrkvfgemrVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLglinpnsltYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGvdtslglgkqIHSLIiksdftsnpfvnnGLINMYSKCGDLEDSIKVFsrmaprnsvsWNSMIAAFARHGNGFKALELYEEMklegveptdvTFLSLLHACSHVGLVNKGMEFLKSMTevhrispraehYACVVDMVGRAGLLIEARSFiermpvkpdVLVWQALLGAcsihgdsemGKYAAEKLFlaqpdspapyiLMANIYSCSGRWKERAKAIKRMKEmgvdketgISWIEIEKQVHSfvvddkmhpqadTIHGVLAELLRLMIdegyvpnkrfilh
Flexible Loop (DISEMBL)
MKSKWVFLKLNSNFPFCSSLVSPFITKIIQdptsstsklvLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMkemgvdketgisWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIdegyvpnkrfilh
Low Complexity Region (SEG)
MKSKWVFLKLNSNFPFCSSLVSPFITKIIQDPTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH
Disordered region (IsUnstruct)
****WVFLKLNSNFPFCSSLVSPFITKIIQDPTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFI**
Disordered Region (DISOPRED)
MKSKWVFLKLNSNFPFCSSLVSPFITKIIQDPTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH
Disordered Region (DISEMBL)
MKSKWVFLKLNSNFPFCSSLVSPFITKIIQDPTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH
Disordered Region (DISPRO)
**SKWVFLKLNSNFPFCSSLVSPFITKIIQDPTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKSKWVFLKLNSNFPFCSSLVSPFITKIIQDPTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	648	2.2.26 [Sep-21-2011]
Q9MA85	658	Pentatricopeptide repeat-	yes	no	0.993	0.978	0.630	0.0
Q9SVP7	1064	Pentatricopeptide repeat-	no	no	0.902	0.549	0.343	1e-108
Q9SN39	871	Pentatricopeptide repeat-	no	no	0.888	0.661	0.350	1e-107
Q9ZUW3	868	Pentatricopeptide repeat-	no	no	0.912	0.680	0.343	1e-106
P93005	727	Pentatricopeptide repeat-	no	no	0.841	0.749	0.387	1e-104
Q9FIB2	995	Putative pentatricopeptid	no	no	0.856	0.557	0.371	1e-104
Q9STE1	857	Pentatricopeptide repeat-	no	no	0.918	0.694	0.362	1e-104
Q5G1T1	850	Pentatricopeptide repeat-	no	no	0.851	0.649	0.370	1e-104
Q9SY02	781	Pentatricopeptide repeat-	no	no	0.842	0.699	0.349	1e-104
Q9SHZ8	786	Pentatricopeptide repeat-	no	no	0.967	0.797	0.325	1e-103

>sp|Q9MA85|PP215_ARATH Pentatricopeptide repeat-containing protein At3g05340 OS=Arabidopsis thaliana GN=PCMP-E83 PE=2 SV=2

 Score =  832 bits (2150), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/649 (63%), Positives = 497/649 (76%), Gaps = 5/649 (0%)

Query: 1   MKSKWVFLKLNSNFPFC-SSLVSPFITKIIQDPTSSTSKLVLDNYVDISRLLSISAKEGH 59
           M S+WV  KL S+ P C S+++SP    I Q P    S  +L N+VD+S LLSI  +EG 
Sbjct: 1   MNSRWVIQKLTSHLPSCLSTVLSPSKILIRQSPNYQVSTFLL-NHVDMSLLLSICGREGW 59

Query: 60  F-HLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMR 118
           F HLGP LHAS IK  E F+  +     NA V+WNSLLS Y KC ++ +A+KLFD+MPMR
Sbjct: 60  FPHLGPCLHASIIKNPEFFEPVDADIHRNALVVWNSLLSLYAKCGKLVDAIKLFDEMPMR 119

Query: 119 DTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMI 178
           D +S N +  GFLRN E + GF   KR L  G +  D A+ TI+LS CD  E  LV+KMI
Sbjct: 120 DVISQNIVFYGFLRNRETESGFVLLKRMLGSGGF--DHATLTIVLSVCDTPEFCLVTKMI 177

Query: 179 HCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLY 238
           H L  L GY++E++VGN LITSYFKCG S SGR VF  M  RNVIT TAVISGL++N+L+
Sbjct: 178 HALAILSGYDKEISVGNKLITSYFKCGCSVSGRGVFDGMSHRNVITLTAVISGLIENELH 237

Query: 239 EEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESAL 298
           E+GL+LF  M  GL++PNS+TYLS++ ACSG Q + EG+QIH +LWK  ++S+LCIESAL
Sbjct: 238 EDGLRLFSLMRRGLVHPNSVTYLSALAACSGSQRIVEGQQIHALLWKYGIESELCIESAL 297

Query: 299 MDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDP 358
           MDMYSKCGS+EDAW IFE   E+D VSMTVILVG AQNG EEEA+Q F++M++AG+EID 
Sbjct: 298 MDMYSKCGSIEDAWTIFESTTEVDEVSMTVILVGLAQNGSEEEAIQFFIRMLQAGVEIDA 357

Query: 359 NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSR 418
           N+VSAVLGV  +D SLGLGKQ+HSL+IK  F+ N FVNNGLINMYSKCGDL DS  VF R
Sbjct: 358 NVVSAVLGVSFIDNSLGLGKQLHSLVIKRKFSGNTFVNNGLINMYSKCGDLTDSQTVFRR 417

Query: 419 MAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKG 478
           M  RN VSWNSMIAAFARHG+G  AL+LYEEM    V+PTDVTFLSLLHACSHVGL++KG
Sbjct: 418 MPKRNYVSWNSMIAAFARHGHGLAALKLYEEMTTLEVKPTDVTFLSLLHACSHVGLIDKG 477

Query: 479 MEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACS 538
            E L  M EVH I PR EHY C++DM+GRAGLL EA+SFI+ +P+KPD  +WQALLGACS
Sbjct: 478 RELLNEMKEVHGIEPRTEHYTCIIDMLGRAGLLKEAKSFIDSLPLKPDCKIWQALLGACS 537

Query: 539 IHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGI 598
            HGD+E+G+YAAE+LF   PDS + +IL+ANIYS  G+WKERAK IKRMK MGV KETGI
Sbjct: 538 FHGDTEVGEYAAEQLFQTAPDSSSAHILIANIYSSRGKWKERAKTIKRMKAMGVTKETGI 597

Query: 599 SWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFIL 647
           S IEIE + HSFVV+DK+HPQA+ I+ VL+ L  +M+DEGY P+KRFIL
Sbjct: 598 SSIEIEHKTHSFVVEDKLHPQAEAIYDVLSGLFPVMVDEGYRPDKRFIL 646

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2

 Score =  392 bits (1007), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 205/596 (34%), Positives = 336/596 (56%), Gaps = 11/596 (1%)

Query: 47  ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMR 106
           ++ L+   + +G    G  LHA   K     +N+          I  +LL+ Y KC  + 
Sbjct: 392 LASLVVACSADGTLFRGQQLHAYTTKLGFASNNK----------IEGALLNLYAKCADIE 441

Query: 107 NAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC 166
            A+  F +  + + V WN M+  +    +    F  F R +++     +Q ++  IL  C
Sbjct: 442 TALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIF-RQMQIEEIVPNQYTYPSILKTC 500

Query: 167 DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWT 226
            R     + + IH  +    ++    V + LI  Y K G   +   +      ++V++WT
Sbjct: 501 IRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWT 560

Query: 227 AVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL 286
            +I+G  Q    ++ L  F +M    I  + +   ++V AC+GLQAL EG+QIH      
Sbjct: 561 TMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVS 620

Query: 287 ALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLF 346
              SDL  ++AL+ +YS+CG +E+++  FE  E  D ++   ++ GF Q+G  EEA+++F
Sbjct: 621 GFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVF 680

Query: 347 VKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKC 406
           V+M + GI+ +     + +       ++  GKQ+H++I K+ + S   V N LI+MY+KC
Sbjct: 681 VRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKC 740

Query: 407 GDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL 466
           G + D+ K F  ++ +N VSWN++I A+++HG G +AL+ +++M    V P  VT + +L
Sbjct: 741 GSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVL 800

Query: 467 HACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPD 526
            ACSH+GLV+KG+ + +SM   + +SP+ EHY CVVDM+ RAGLL  A+ FI+ MP+KPD
Sbjct: 801 SACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPD 860

Query: 527 VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKR 586
            LVW+ LL AC +H + E+G++AA  L   +P+  A Y+L++N+Y+ S +W  R    ++
Sbjct: 861 ALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQK 920

Query: 587 MKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPN 642
           MKE GV KE G SWIE++  +HSF V D+ HP AD IH    +L +   + GYV +
Sbjct: 921 MKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQD 976

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1

 Score =  389 bits (1000), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 206/588 (35%), Positives = 343/588 (58%), Gaps = 12/588 (2%)

Query: 61  HLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDT 120
           H G  LH   +K+   F  +N         + NSL++FYLK  ++ +A K+FD+M  RD 
Sbjct: 212 HGGEQLHGFILKS--GFGERNS--------VGNSLVAFYLKNQRVDSARKVFDEMTERDV 261

Query: 121 VSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHC 180
           +SWN++++G++ NG  + G   F + L  G  ++D A+   + + C  S L  + + +H 
Sbjct: 262 ISWNSIINGYVSNGLAEKGLSVFVQMLVSGI-EIDLATIVSVFAGCADSRLISLGRAVHS 320

Query: 181 LVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEE 240
           +     +  E    N L+  Y KCG   S + VF EM  R+V+++T++I+G  +  L  E
Sbjct: 321 IGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGE 380

Query: 241 GLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMD 300
            +KLF +M    I+P+  T  + +  C+  + L EG+++H  + +  L  D+ + +ALMD
Sbjct: 381 AVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMD 440

Query: 301 MYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLF-VKMVKAGIEIDPN 359
           MY+KCGS+++A  +F      D +S   I+ G+++N +  EA+ LF + + +     D  
Sbjct: 441 MYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDER 500

Query: 360 MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRM 419
            V+ VL      ++   G++IH  I+++ + S+  V N L++MY+KCG L  +  +F  +
Sbjct: 501 TVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDI 560

Query: 420 APRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGM 479
           A ++ VSW  MIA +  HG G +A+ L+ +M+  G+E  +++F+SLL+ACSH GLV++G 
Sbjct: 561 ASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGW 620

Query: 480 EFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSI 539
            F   M    +I P  EHYAC+VDM+ R G LI+A  FIE MP+ PD  +W ALL  C I
Sbjct: 621 RFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRI 680

Query: 540 HGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGIS 599
           H D ++ +  AEK+F  +P++   Y+LMANIY+ + +W++  +  KR+ + G+ K  G S
Sbjct: 681 HHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCS 740

Query: 600 WIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFIL 647
           WIEI+ +V+ FV  D  +P+ + I   L ++   MI+EGY P  ++ L
Sbjct: 741 WIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYAL 788

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1

 Score =  387 bits (993), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/608 (34%), Positives = 340/608 (55%), Gaps = 17/608 (2%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           N    +  L + A+EG    G  +H   +K            +     + NSL++ YLKC
Sbjct: 193 NSFTFAAALGVLAEEGVGGRGLQVHTVVVKN----------GLDKTIPVSNSLINLYLKC 242

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
             +R A  LFD   ++  V+WN+M+SG+  NG      G F  S+ L + +L ++SF  +
Sbjct: 243 GNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMF-YSMRLNYVRLSESSFASV 301

Query: 163 LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR-VRN 221
           +  C   +    ++ +HC V   G+  +  +  AL+ +Y KC +     ++F E+  V N
Sbjct: 302 IKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGN 361

Query: 222 VITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHG 281
           V++WTA+ISG +QN   EE + LF +M    + PN  TY   + A   +       ++H 
Sbjct: 362 VVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISP----SEVHA 417

Query: 282 ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEE 341
            + K   +    + +AL+D Y K G VE+A ++F   ++ D V+ + +L G+AQ G  E 
Sbjct: 418 QVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEA 477

Query: 342 AMQLFVKMVKAGIEIDPNMVSAVLGV-FGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLI 400
           A+++F ++ K GI+ +    S++L V    + S+G GKQ H   IKS   S+  V++ L+
Sbjct: 478 AIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALL 537

Query: 401 NMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDV 460
            MY+K G++E + +VF R   ++ VSWNSMI+ +A+HG   KAL++++EMK   V+   V
Sbjct: 538 TMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGV 597

Query: 461 TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIER 520
           TF+ +  AC+H GLV +G ++   M    +I+P  EH +C+VD+  RAG L +A   IE 
Sbjct: 598 TFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIEN 657

Query: 521 MPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKER 580
           MP      +W+ +L AC +H  +E+G+ AAEK+   +P+  A Y+L++N+Y+ SG W+ER
Sbjct: 658 MPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQER 717

Query: 581 AKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYV 640
           AK  K M E  V KE G SWIE++ + +SF+  D+ HP  D I+  L +L   + D GY 
Sbjct: 718 AKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYE 777

Query: 641 PNKRFILH 648
           P+  ++L 
Sbjct: 778 PDTSYVLQ 785

Arabidopsis thaliana (taxid: 3702)

>sp|P93005|PP181_ARATH Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana GN=PCMP-E19 PE=3 SV=1

 Score =  380 bits (977), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 214/552 (38%), Positives = 310/552 (56%), Gaps = 7/552 (1%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMG---FGFFKRSLEL 149
            SL+  Y K   + + +K+F  MP R+T +W+TMVSG+   G  +     F  F R  E 
Sbjct: 157 TSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFLREKEE 216

Query: 150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           G        FT +LS+   +    + + IHC+    G    V + NAL+T Y KC S + 
Sbjct: 217 G--SDSDYVFTAVLSSLAATIYVGLGRQIHCITIKNGLLGFVALSNALVTMYSKCESLNE 274

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
             K+F     RN ITW+A+++G  QN    E +KLF +M    I P+  T +  + ACS 
Sbjct: 275 ACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSD 334

Query: 270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
           +  L EG+Q+H  L KL  +  L   +AL+DMY+K G + DA + F+  +E D    T +
Sbjct: 335 ICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSL 394

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGI-EIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           + G+ QN   EEA+ L+ +M  AGI   DP M S VL       +L LGKQ+H   IK  
Sbjct: 395 ISGYVQNSDNEEALILYRRMKTAGIIPNDPTMAS-VLKACSSLATLELGKQVHGHTIKHG 453

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
           F     + + L  MYSKCG LED   VF R   ++ VSWN+MI+  + +G G +ALEL+E
Sbjct: 454 FGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFE 513

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
           EM  EG+EP DVTF++++ ACSH G V +G  +   M++   + P+ +HYAC+VD++ RA
Sbjct: 514 EMLAEGMEPDDVTFVNIISACSHKGFVERGWFYFNMMSDQIGLDPKVDHYACMVDLLSRA 573

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
           G L EA+ FIE   +   + +W+ LL AC  HG  E+G YA EKL        + Y+ ++
Sbjct: 574 GQLKEAKEFIESANIDHGLCLWRILLSACKNHGKCELGVYAGEKLMALGSRESSTYVQLS 633

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
            IY+  GR ++  +  K M+  GV KE G SWIE++ Q H FVV D MHP  +    ++ 
Sbjct: 634 GIYTALGRMRDVERVWKHMRANGVSKEVGCSWIELKNQYHVFVVGDTMHPMIEETKDLVC 693

Query: 629 ELLRLMIDEGYV 640
            + R MI+EG+V
Sbjct: 694 LVSRQMIEEGFV 705

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FIB2|PP373_ARATH Putative pentatricopeptide repeat-containing protein At5g09950 OS=Arabidopsis thaliana GN=PCMP-H35 PE=3 SV=1

 Score =  379 bits (974), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 210/565 (37%), Positives = 333/565 (58%), Gaps = 10/565 (1%)

Query: 91  IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
           I N L++ Y KC  + +A ++F  M  +D+VSWN+M++G  +NG F      +K    + 
Sbjct: 351 IGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYK---SMR 407

Query: 151 FYQLDQASFTII--LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
            + +   SFT+I  LS+C   + + + + IH      G +  V+V NAL+T Y + G  +
Sbjct: 408 RHDILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLN 467

Query: 209 SGRKVFGEMRVRNVITWTAVISGLVQNQL-YEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
             RK+F  M   + ++W ++I  L +++    E +  F+         N +T+ S + A 
Sbjct: 468 ECRKIFSSMPEHDQVSWNSIIGALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAV 527

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIF-EFAEELDGVSM 326
           S L     G+QIHG+  K  +  +   E+AL+  Y KCG ++   +IF   AE  D V+ 
Sbjct: 528 SSLSFGELGKQIHGLALKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTW 587

Query: 327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK 386
             ++ G+  N    +A+ L   M++ G  +D  M + VL  F    +L  G ++H+  ++
Sbjct: 588 NSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVR 647

Query: 387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
           +   S+  V + L++MYSKCG L+ +++ F+ M  RNS SWNSMI+ +ARHG G +AL+L
Sbjct: 648 ACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKL 707

Query: 447 YEEMKLEGVEPTD-VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMV 505
           +E MKL+G  P D VTF+ +L ACSH GL+ +G +  +SM++ + ++PR EH++C+ D++
Sbjct: 708 FETMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVL 767

Query: 506 GRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG--DSEMGKYAAEKLFLAQPDSPAP 563
           GRAG L +   FIE+MP+KP+VL+W+ +LGAC       +E+GK AAE LF  +P++   
Sbjct: 768 GRAGELDKLEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVN 827

Query: 564 YILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTI 623
           Y+L+ N+Y+  GRW++  KA K+MK+  V KE G SW+ ++  VH FV  DK HP AD I
Sbjct: 828 YVLLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDADVI 887

Query: 624 HGVLAELLRLMIDEGYVPNKRFILH 648
           +  L EL R M D GYVP   F L+
Sbjct: 888 YKKLKELNRKMRDAGYVPQTGFALY 912

Arabidopsis thaliana (taxid: 3702)

>sp|Q9STE1|PP333_ARATH Pentatricopeptide repeat-containing protein At4g21300 OS=Arabidopsis thaliana GN=PCMP-E36 PE=3 SV=1

 Score =  379 bits (973), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 220/607 (36%), Positives = 331/607 (54%), Gaps = 12/607 (1%)

Query: 43  NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
           N V    +LS+ A +    LG  LH   + +   F+            I NSLLS Y KC
Sbjct: 238 NAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGS----------IKNSLLSMYSKC 287

Query: 103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
            +  +A KLF  M   DTV+WN M+SG++++G  +    FF   +  G    D  +F+ +
Sbjct: 288 GRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLP-DAITFSSL 346

Query: 163 LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNV 222
           L +  + E     K IHC +       ++ + +ALI +YFKC   S  + +F +    +V
Sbjct: 347 LPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDV 406

Query: 223 ITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGI 282
           + +TA+ISG + N LY + L++F  +    I+PN +T +S +     L AL  GR++HG 
Sbjct: 407 VVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRELHGF 466

Query: 283 LWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEA 342
           + K    +   I  A++DMY+KCG +  A++IFE   + D VS   ++   AQ+     A
Sbjct: 467 IIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAA 526

Query: 343 MQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINM 402
           + +F +M  +GI  D   +SA L       S   GK IH  +IK    S+ +  + LI+M
Sbjct: 527 IDIFRQMGVSGICYDCVSISAALSACANLPSESFGKAIHGFMIKHSLASDVYSESTLIDM 586

Query: 403 YSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM-KLEGVEPTDVT 461
           Y+KCG+L+ ++ VF  M  +N VSWNS+IAA   HG    +L L+ EM +  G+ P  +T
Sbjct: 587 YAKCGNLKAAMNVFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQIT 646

Query: 462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM 521
           FL ++ +C HVG V++G+ F +SMTE + I P+ EHYACVVD+ GRAG L EA   ++ M
Sbjct: 647 FLEIISSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSM 706

Query: 522 PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERA 581
           P  PD  VW  LLGAC +H + E+ + A+ KL    P +   Y+L++N ++ +  W+   
Sbjct: 707 PFPPDAGVWGTLLGACRLHKNVELAEVASSKLMDLDPSNSGYYVLISNAHANAREWESVT 766

Query: 582 KAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVP 641
           K    MKE  V K  G SWIEI K+ H FV  D  HP++  I+ +L  LL  +  EGY+P
Sbjct: 767 KVRSLMKEREVQKIPGYSWIEINKRTHLFVSGDVNHPESSHIYSLLNSLLGELRLEGYIP 826

Query: 642 NKRFILH 648
                LH
Sbjct: 827 QPYLPLH 833

Arabidopsis thaliana (taxid: 3702)

>sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1

 Score =  379 bits (973), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 208/561 (37%), Positives = 323/561 (57%), Gaps = 9/561 (1%)

Query: 94  SLLSFYLKCDQ-MRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           SL+  ++K +    NA K+FD M   + V+W  M++  ++ G       FF   +  GF 
Sbjct: 207 SLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGF- 265

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKC---GSSSS 209
           + D+ + + + SAC   E   + K +H      G  ++V    +L+  Y KC   GS   
Sbjct: 266 ESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDDVEC--SLVDMYAKCSADGSVDD 323

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQN-QLYEEGLKLFVKM-HLGLINPNSLTYLSSVMAC 267
            RKVF  M   +V++WTA+I+G ++N  L  E + LF +M   G + PN  T+ S+  AC
Sbjct: 324 CRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKAC 383

Query: 268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
             L     G+Q+ G  +K  L S+  + ++++ M+ K   +EDA + FE   E + VS  
Sbjct: 384 GNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYN 443

Query: 328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS 387
             L G  +N   E+A +L  ++ +  + +     +++L       S+  G+QIHS ++K 
Sbjct: 444 TFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKL 503

Query: 388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY 447
             + N  V N LI+MYSKCG ++ + +VF+ M  RN +SW SMI  FA+HG   + LE +
Sbjct: 504 GLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETF 563

Query: 448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR 507
            +M  EGV+P +VT++++L ACSHVGLV++G     SM E H+I P+ EHYAC+VD++ R
Sbjct: 564 NQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCR 623

Query: 508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILM 567
           AGLL +A  FI  MP + DVLVW+  LGAC +H ++E+GK AA K+    P+ PA YI +
Sbjct: 624 AGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQL 683

Query: 568 ANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVL 627
           +NIY+C+G+W+E  +  ++MKE  + KE G SWIE+  ++H F V D  HP A  I+  L
Sbjct: 684 SNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDEL 743

Query: 628 AELLRLMIDEGYVPNKRFILH 648
             L+  +   GYVP+   +LH
Sbjct: 744 DRLITEIKRCGYVPDTDLVLH 764

May play a role in embryogenesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1

 Score =  379 bits (972), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 205/586 (34%), Positives = 330/586 (56%), Gaps = 40/586 (6%)

Query: 90  VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLEL 149
           V WN ++  Y++   +  A +LF+ MP RD  SWNTM+SG+ +NG  D     F R  E 
Sbjct: 127 VSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEK 186

Query: 150 GFYQLDQASFTIILSA----------C----DRSELSLVS------------KMIHCLVY 183
                +  S+  +LSA          C     R   +LVS            K++    +
Sbjct: 187 -----NDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQF 241

Query: 184 LCGYE-EEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGL 242
                  +V   N +IT Y + G     R++F E  V++V TWTA++SG +QN++ EE  
Sbjct: 242 FDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEAR 301

Query: 243 KLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMY 302
           +LF KM      P       + M    +Q   E  ++   L+ +    ++   + ++  Y
Sbjct: 302 ELFDKM------PERNEVSWNAMLAGYVQG--ERMEMAKELFDVMPCRNVSTWNTMITGY 353

Query: 303 SKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS 362
           ++CG + +A  +F+   + D VS   ++ G++Q+G   EA++LFV+M + G  ++ +  S
Sbjct: 354 AQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFS 413

Query: 363 AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR 422
           + L       +L LGKQ+H  ++K  + +  FV N L+ MY KCG +E++  +F  MA +
Sbjct: 414 SALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGK 473

Query: 423 NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFL 482
           + VSWN+MIA ++RHG G  AL  +E MK EG++P D T +++L ACSH GLV+KG ++ 
Sbjct: 474 DIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYF 533

Query: 483 KSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGD 542
            +MT+ + + P ++HYAC+VD++GRAGLL +A + ++ MP +PD  +W  LLGA  +HG+
Sbjct: 534 YTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGN 593

Query: 543 SEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIE 602
           +E+ + AA+K+F  +P++   Y+L++N+Y+ SGRW +  K   RM++ GV K  G SWIE
Sbjct: 594 TELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIE 653

Query: 603 IEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           I+ + H+F V D+ HP+ D I   L EL   M   GYV     +LH
Sbjct: 654 IQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLH 699

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1

 Score =  377 bits (968), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 233/716 (32%), Positives = 369/716 (51%), Gaps = 89/716 (12%)

Query: 6   VFLKLNSNFPFCSSLVSPFITKIIQDPTSS-------TSKLVLDNYVDISRLLSISAKEG 58
           V L L++    C++L+   + K     T+         S L+   Y+ ++ L+++ +K G
Sbjct: 5   VPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYL-MNNLMNVYSKTG 63

Query: 59  HFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMR 118
           +     +LHA   K F+    +  ++       WN++LS Y K   M +  + FD +P R
Sbjct: 64  Y-----ALHAR--KLFDEMPLRTAFS-------WNTVLSAYSKRGDMDSTCEFFDQLPQR 109

Query: 119 DTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMI 178
           D+VSW TM+ G+   G++          ++ G  +  Q + T +L++   +      K +
Sbjct: 110 DSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGI-EPTQFTLTNVLASVAATRCMETGKKV 168

Query: 179 HCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNV---------------- 222
           H  +   G    V+V N+L+  Y KCG     + VF  M VR++                
Sbjct: 169 HSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQM 228

Query: 223 ---------------ITWTAVISGLVQNQLYEEGLKLFVKM-HLGLINPNSLTYLSSVMA 266
                          +TW ++ISG  Q       L +F KM    L++P+  T  S + A
Sbjct: 229 DLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSA 288

Query: 267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE---------- 316
           C+ L+ LC G+QIH  +          + +AL+ MYS+CG VE A ++ E          
Sbjct: 289 CANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIE 348

Query: 317 -FAEELDG----------------------VSMTVILVGFAQNGFEEEAMQLFVKMVKAG 353
            F   LDG                      V+ T ++VG+ Q+G   EA+ LF  MV  G
Sbjct: 349 GFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGG 408

Query: 354 IEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSI 413
              +   ++A+L V     SL  GKQIH   +KS    +  V+N LI MY+K G++  + 
Sbjct: 409 QRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSAS 468

Query: 414 KVFSRM-APRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHV 472
           + F  +   R++VSW SMI A A+HG+  +ALEL+E M +EG+ P  +T++ +  AC+H 
Sbjct: 469 RAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHA 528

Query: 473 GLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQA 532
           GLVN+G ++   M +V +I P   HYAC+VD+ GRAGLL EA+ FIE+MP++PDV+ W +
Sbjct: 529 GLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGS 588

Query: 533 LLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGV 592
           LL AC +H + ++GK AAE+L L +P++   Y  +AN+YS  G+W+E AK  K MK+  V
Sbjct: 589 LLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRV 648

Query: 593 DKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
            KE G SWIE++ +VH F V+D  HP+ + I+  + ++   +   GYVP+   +LH
Sbjct: 649 KKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVLH 704

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	648
225450928	656	PREDICTED: pentatricopeptide repeat-cont	0.998	0.986	0.704	0.0
224125246	577	predicted protein [Populus trichocarpa]	0.827	0.928	0.755	0.0
147799187	542	hypothetical protein VITISV_002140 [Viti	0.779	0.931	0.739	0.0
357512007	650	Pentatricopeptide repeat-containing prot	0.941	0.938	0.668	0.0
42563517	658	pentatricopeptide repeat-containing prot	0.993	0.978	0.630	0.0
6729044	770	hypothetical protein [Arabidopsis thalia	0.993	0.836	0.630	0.0
297833250	676	pentatricopeptide repeat-containing prot	0.976	0.936	0.633	0.0
255542634	736	pentatricopeptide repeat-containing prot	0.645	0.567	0.742	0.0
356504050	753	PREDICTED: pentatricopeptide repeat-cont	0.629	0.541	0.715	0.0
449442815	838	PREDICTED: pentatricopeptide repeat-cont	0.700	0.541	0.681	0.0

>gi|225450928|ref|XP_002280725.1| PREDICTED: pentatricopeptide repeat-containing protein At3g05340 [Vitis vinifera]

 Score =  954 bits (2467), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/649 (70%), Positives = 536/649 (82%), Gaps = 2/649 (0%)

Query: 1   MKSKWVFLKLNSNFPFCSSLVS-PFITKIIQDPTSSTSKLVLDNYVDISRLLSISAKEGH 59
           MK KW F KLNS  P+C+S VS P  T I+Q+P S TSK  + N VDIS LLS+  +EG+
Sbjct: 1   MKPKWFFQKLNSFLPYCTSPVSSPLKTLILQNPYSETSKFAI-NQVDISFLLSLCGREGY 59

Query: 60  FHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRD 119
            HLG SLHAS IK F   D  N  N+ N  V+WNSLLS Y +C ++R+A K+FD MPM+D
Sbjct: 60  LHLGSSLHASIIKNFGFLDGNNRDNLRNVIVVWNSLLSMYSRCGELRDATKVFDHMPMKD 119

Query: 120 TVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIH 179
           T+SWN+ +SG L NG+ +MGF  FK+  E G YQ DQA+ T +L+ACD+ E   VSKMIH
Sbjct: 120 TISWNSRISGLLGNGDIEMGFRVFKQLYESGIYQFDQATLTTVLTACDKPEFCYVSKMIH 179

Query: 180 CLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYE 239
            LV+L GYE E+TVGNALITSYF+CG  SSGR+VF EM  +NV+TWTAVISGL Q Q YE
Sbjct: 180 SLVFLYGYEREITVGNALITSYFRCGCCSSGRRVFDEMSEKNVVTWTAVISGLSQGQFYE 239

Query: 240 EGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALM 299
           E LKLF KM  G ++PNSLTYLSS+MACSGLQA+ EGRQIHG++WKL +  DLCIESALM
Sbjct: 240 ESLKLFGKMRDGPVDPNSLTYLSSLMACSGLQAIREGRQIHGLVWKLGVHFDLCIESALM 299

Query: 300 DMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPN 359
           DMYSKCGS+EDAW+IFE AEE+D VSMTVILVG AQNGFEEE++Q+FVKMVK G+ IDPN
Sbjct: 300 DMYSKCGSLEDAWKIFESAEEVDEVSMTVILVGLAQNGFEEESIQVFVKMVKNGVVIDPN 359

Query: 360 MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRM 419
           M+SA+LGVFG+DTSL LGKQIHSLIIK  F SN FVNNGLINMYSKCGDL+DSIK+F  M
Sbjct: 360 MISAILGVFGIDTSLALGKQIHSLIIKKSFGSNYFVNNGLINMYSKCGDLDDSIKIFCWM 419

Query: 420 APRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGM 479
             RNSVSWNSMIAAFARHGNG +AL+LYEEM+LEGV PTDVTFLSLLHAC+HVGLV KGM
Sbjct: 420 PQRNSVSWNSMIAAFARHGNGSRALQLYEEMRLEGVWPTDVTFLSLLHACAHVGLVEKGM 479

Query: 480 EFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSI 539
            FL+SM + + I PR EHYACVVDM+GRAGLL EA+ FIER+P KP +LVWQALLGACSI
Sbjct: 480 GFLESMAKDYGIGPRMEHYACVVDMMGRAGLLNEAKKFIERLPEKPGILVWQALLGACSI 539

Query: 540 HGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGIS 599
           HG+SEMGKYAA +LFL  P+SPAPYIL+ANIYS  G+WKERA+ IK+MK+MGV KETGIS
Sbjct: 540 HGNSEMGKYAANQLFLQAPESPAPYILLANIYSSEGKWKERARTIKKMKDMGVTKETGIS 599

Query: 600 WIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           WIEIEKQ+HSFVV+D+MHP A+ I+GVL EL +LM+DEGYVP+KRFIL+
Sbjct: 600 WIEIEKQIHSFVVEDRMHPHAEIIYGVLGELFKLMMDEGYVPDKRFILY 648

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125246|ref|XP_002319538.1| predicted protein [Populus trichocarpa] gi|222857914|gb|EEE95461.1| predicted protein [Populus trichocarpa]

 Score =  873 bits (2255), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/549 (75%), Positives = 473/549 (86%)

Query: 99  YLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQAS 158
           Y K   + +A KLFD+MPMRDTVSWN M+SGFL++G FD+GFGFFK+   LGFY+LDQA+
Sbjct: 2   YAKNGVLTDAAKLFDEMPMRDTVSWNIMISGFLKDGSFDVGFGFFKQMQSLGFYRLDQAT 61

Query: 159 FTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR 218
            T ILSACDR EL  V+KM+HCL  L G++ E++VGNALITSYFKCG SSSG +VF EM 
Sbjct: 62  LTTILSACDRPELGFVNKMVHCLAVLNGFQREISVGNALITSYFKCGFSSSGMQVFDEML 121

Query: 219 VRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQ 278
            RNVITWTA+ISGLVQ++LY + L+LFV+M  GL+ PNSLTYLSS+MACSGLQAL EG Q
Sbjct: 122 ERNVITWTAIISGLVQSELYRDSLRLFVEMTNGLVEPNSLTYLSSLMACSGLQALREGCQ 181

Query: 279 IHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGF 338
           IHG +WKL LQSD C+ESALMDMYSKCGS+ D  QIFE A +LD VSMT+IL GFAQNGF
Sbjct: 182 IHGRVWKLGLQSDFCVESALMDMYSKCGSMGDTLQIFESAGQLDKVSMTIILAGFAQNGF 241

Query: 339 EEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNG 398
           EEEAMQ FVKM++AG EID NMVSAVLGVFG DTSLGLG+QIHSL+IK  F SNPFV NG
Sbjct: 242 EEEAMQFFVKMLEAGTEIDSNMVSAVLGVFGADTSLGLGQQIHSLVIKRSFGSNPFVGNG 301

Query: 399 LINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT 458
           LINMYSKCGDLEDS KVFSRM   NSVSWNSMIAAFARHG+G +AL+LY+EM+L+GVEPT
Sbjct: 302 LINMYSKCGDLEDSTKVFSRMPCMNSVSWNSMIAAFARHGDGSRALQLYKEMRLKGVEPT 361

Query: 459 DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFI 518
           DVTFLSLLHACSHVGLV KGMEFLKSMTEVH+++PR EHYACVVDM+GRAGLL EA++FI
Sbjct: 362 DVTFLSLLHACSHVGLVEKGMEFLKSMTEVHKLTPRMEHYACVVDMLGRAGLLNEAKTFI 421

Query: 519 ERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWK 578
           E +P+KPDVLVWQALLGAC IHGD EMGKYAAE L L+ P+ P+PYIL+ANIYS  GRWK
Sbjct: 422 EGLPIKPDVLVWQALLGACGIHGDPEMGKYAAEHLILSAPEKPSPYILLANIYSSKGRWK 481

Query: 579 ERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEG 638
           ERAK IKRMKEM V KETGISWIEIE  +HSFVV+DKMHPQA+ I+GVLAEL   MIDEG
Sbjct: 482 ERAKTIKRMKEMCVAKETGISWIEIENNLHSFVVEDKMHPQAEIIYGVLAELFGHMIDEG 541

Query: 639 YVPNKRFIL 647
           YVP+KR+IL
Sbjct: 542 YVPDKRYIL 550

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147799187|emb|CAN74829.1| hypothetical protein VITISV_002140 [Vitis vinifera]

 Score =  839 bits (2168), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/534 (73%), Positives = 459/534 (85%)

Query: 115 MPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLV 174
           MPM+DT+SWN+ +SG L NG+ +MGF  FK+  E G YQ DQA+ T +L+ACD+ E   V
Sbjct: 1   MPMKDTISWNSRISGLLGNGDIEMGFRVFKQLYESGIYQFDQATLTTVLTACDKPEFCYV 60

Query: 175 SKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQ 234
           SKMIH LV+L GYE E+TVGNALITSYF+CG  SSGR+VF EM  +NV+TWTAVISGL Q
Sbjct: 61  SKMIHSLVFLYGYEREITVGNALITSYFRCGCCSSGRRVFDEMSEKNVVTWTAVISGLSQ 120

Query: 235 NQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCI 294
            Q YEE LKLF KM  G ++PNSLTYLSS+MACSGLQA+ EGRQIHG++WKL +  DLCI
Sbjct: 121 GQFYEESLKLFGKMRDGPVDPNSLTYLSSLMACSGLQAIREGRQIHGLVWKLGVHFDLCI 180

Query: 295 ESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGI 354
           ESALMDMYSKCGS+EDAW+IFE AEE+D VSMTVILVG AQNGFEEE++Q+FVKMVK G+
Sbjct: 181 ESALMDMYSKCGSLEDAWKIFESAEEVDEVSMTVILVGLAQNGFEEESIQVFVKMVKNGV 240

Query: 355 EIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIK 414
            IDPNM+SA+LGVFG+DTSL LGKQIHSLIIK  F SN FVNNGLINMYSKCGDL+DSIK
Sbjct: 241 VIDPNMISAILGVFGIDTSLALGKQIHSLIIKKSFGSNYFVNNGLINMYSKCGDLDDSIK 300

Query: 415 VFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGL 474
           +F  M  RNSVSWNSMIAAFARHGNG +AL+LYEEM+LEGV PTDVTFLSLLHAC+HVGL
Sbjct: 301 IFCWMPQRNSVSWNSMIAAFARHGNGSRALQLYEEMRLEGVWPTDVTFLSLLHACAHVGL 360

Query: 475 VNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL 534
           V KGM FL+SM + + I PR EHYACVVDM+GRAGLL EA+ FIER+P KP +LVWQALL
Sbjct: 361 VEKGMGFLESMAKDYGIGPRMEHYACVVDMMGRAGLLNEAKKFIERLPEKPGILVWQALL 420

Query: 535 GACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDK 594
           GACSIHG+SEMGKYAA +LFL  P+SPAPYIL+ANIYS  G+WKERA+ IK+MK+MGV K
Sbjct: 421 GACSIHGNSEMGKYAANQLFLQAPESPAPYILLANIYSSEGKWKERARTIKKMKDMGVTK 480

Query: 595 ETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           ETGISWIEIEKQ+HSFVV+D+MHP A+ I+GVL EL +LM+DEGYVP+KRFIL+
Sbjct: 481 ETGISWIEIEKQIHSFVVEDRMHPHAEIIYGVLGELFKLMMDEGYVPDKRFILY 534

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357512007|ref|XP_003626292.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355501307|gb|AES82510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]

 Score =  837 bits (2162), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/619 (66%), Positives = 492/619 (79%), Gaps = 9/619 (1%)

Query: 35  STSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNS 94
           ST+K +L N+ D++ LL++  ++ +  LG S+HA  IK    FD     +  NA  IWNS
Sbjct: 26  STTKSLL-NHADLTSLLTLCGRDRNLTLGSSIHARIIKQPPSFDFDG--SQRNALFIWNS 82

Query: 95  LLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY-- 152
           LLS Y KC + RNA  +FD MP+RDTVSWNTM+SGFLRNG+FD  F FFK+  E      
Sbjct: 83  LLSMYSKCGEFRNAGNVFDYMPVRDTVSWNTMISGFLRNGDFDTSFKFFKQMTESNRVCC 142

Query: 153 QLDQASFTIILSACDRSELSL---VSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
           + D+A+ T +LS CD   L +   V++MIH LV++ G+E E+TVGNALITSYFKC   S 
Sbjct: 143 RFDKATLTTMLSGCDGLRLGISTSVTQMIHGLVFVGGFEREITVGNALITSYFKCECFSQ 202

Query: 210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL-GLINPNSLTYLSSVMACS 268
           GRKVF EM  RNV+TWTAVISGL QN+ YE+ L+LF +M   G ++PN LTYLSS+MACS
Sbjct: 203 GRKVFDEMIERNVVTWTAVISGLAQNEFYEDSLRLFAQMRCCGSVSPNVLTYLSSLMACS 262

Query: 269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
           GLQ L +G++IHG+LWKL +QSDLCIESALMD+YSKCGS++ AWQIFE AEELDGVS+TV
Sbjct: 263 GLQVLRDGQKIHGLLWKLGMQSDLCIESALMDLYSKCGSLDAAWQIFESAEELDGVSLTV 322

Query: 329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
           ILV FAQNGFEEEA+Q+F KMV  G+E+D NMVSAVLGVFGV T L LGKQIHSLIIK +
Sbjct: 323 ILVAFAQNGFEEEAIQIFTKMVALGMEVDANMVSAVLGVFGVGTYLALGKQIHSLIIKKN 382

Query: 389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
           F  NPFV NGL+NMYSKCGDL DS+ VF +M  +NSVSWNS+IAAFARHG+GFKAL+ YE
Sbjct: 383 FCENPFVGNGLVNMYSKCGDLSDSLLVFYQMTQKNSVSWNSVIAAFARHGDGFKALQFYE 442

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
           EM++EGV PTDVTFLSLLHACSH GLV KGME L+SMT  H ISPR+EHYACVVDM+GRA
Sbjct: 443 EMRVEGVAPTDVTFLSLLHACSHAGLVEKGMELLESMTNDHGISPRSEHYACVVDMLGRA 502

Query: 509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
           G L EA+ FIE +P    VLVWQALLGACSIHGDSEMGKYAA++LF A P SPAPY+LMA
Sbjct: 503 GHLNEAKKFIEGLPEHGGVLVWQALLGACSIHGDSEMGKYAADRLFSAAPASPAPYVLMA 562

Query: 569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
           NIYS  G WKERA +IKRMKEMGV KE GISWIEIEK+V+SFVV DK+HP+AD I  VL+
Sbjct: 563 NIYSSEGNWKERASSIKRMKEMGVAKEVGISWIEIEKKVNSFVVGDKLHPEADVIFWVLS 622

Query: 629 ELLRLMIDEGYVPNKRFIL 647
            LL+ + DEGYVP+K+FIL
Sbjct: 623 GLLKHLKDEGYVPDKKFIL 641

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42563517|ref|NP_187185.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|218546760|sp|Q9MA85.2|PP215_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g05340 gi|332640702|gb|AEE74223.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  832 bits (2150), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/649 (63%), Positives = 497/649 (76%), Gaps = 5/649 (0%)

Query: 1   MKSKWVFLKLNSNFPFC-SSLVSPFITKIIQDPTSSTSKLVLDNYVDISRLLSISAKEGH 59
           M S+WV  KL S+ P C S+++SP    I Q P    S  +L N+VD+S LLSI  +EG 
Sbjct: 1   MNSRWVIQKLTSHLPSCLSTVLSPSKILIRQSPNYQVSTFLL-NHVDMSLLLSICGREGW 59

Query: 60  F-HLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMR 118
           F HLGP LHAS IK  E F+  +     NA V+WNSLLS Y KC ++ +A+KLFD+MPMR
Sbjct: 60  FPHLGPCLHASIIKNPEFFEPVDADIHRNALVVWNSLLSLYAKCGKLVDAIKLFDEMPMR 119

Query: 119 DTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMI 178
           D +S N +  GFLRN E + GF   KR L  G +  D A+ TI+LS CD  E  LV+KMI
Sbjct: 120 DVISQNIVFYGFLRNRETESGFVLLKRMLGSGGF--DHATLTIVLSVCDTPEFCLVTKMI 177

Query: 179 HCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLY 238
           H L  L GY++E++VGN LITSYFKCG S SGR VF  M  RNVIT TAVISGL++N+L+
Sbjct: 178 HALAILSGYDKEISVGNKLITSYFKCGCSVSGRGVFDGMSHRNVITLTAVISGLIENELH 237

Query: 239 EEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESAL 298
           E+GL+LF  M  GL++PNS+TYLS++ ACSG Q + EG+QIH +LWK  ++S+LCIESAL
Sbjct: 238 EDGLRLFSLMRRGLVHPNSVTYLSALAACSGSQRIVEGQQIHALLWKYGIESELCIESAL 297

Query: 299 MDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDP 358
           MDMYSKCGS+EDAW IFE   E+D VSMTVILVG AQNG EEEA+Q F++M++AG+EID 
Sbjct: 298 MDMYSKCGSIEDAWTIFESTTEVDEVSMTVILVGLAQNGSEEEAIQFFIRMLQAGVEIDA 357

Query: 359 NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSR 418
           N+VSAVLGV  +D SLGLGKQ+HSL+IK  F+ N FVNNGLINMYSKCGDL DS  VF R
Sbjct: 358 NVVSAVLGVSFIDNSLGLGKQLHSLVIKRKFSGNTFVNNGLINMYSKCGDLTDSQTVFRR 417

Query: 419 MAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKG 478
           M  RN VSWNSMIAAFARHG+G  AL+LYEEM    V+PTDVTFLSLLHACSHVGL++KG
Sbjct: 418 MPKRNYVSWNSMIAAFARHGHGLAALKLYEEMTTLEVKPTDVTFLSLLHACSHVGLIDKG 477

Query: 479 MEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACS 538
            E L  M EVH I PR EHY C++DM+GRAGLL EA+SFI+ +P+KPD  +WQALLGACS
Sbjct: 478 RELLNEMKEVHGIEPRTEHYTCIIDMLGRAGLLKEAKSFIDSLPLKPDCKIWQALLGACS 537

Query: 539 IHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGI 598
            HGD+E+G+YAAE+LF   PDS + +IL+ANIYS  G+WKERAK IKRMK MGV KETGI
Sbjct: 538 FHGDTEVGEYAAEQLFQTAPDSSSAHILIANIYSSRGKWKERAKTIKRMKAMGVTKETGI 597

Query: 599 SWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFIL 647
           S IEIE + HSFVV+DK+HPQA+ I+ VL+ L  +M+DEGY P+KRFIL
Sbjct: 598 SSIEIEHKTHSFVVEDKLHPQAEAIYDVLSGLFPVMVDEGYRPDKRFIL 646

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6729044|gb|AAF27040.1|AC009177_30 hypothetical protein [Arabidopsis thaliana]

 Score =  831 bits (2147), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/649 (63%), Positives = 497/649 (76%), Gaps = 5/649 (0%)

Query: 1   MKSKWVFLKLNSNFPFC-SSLVSPFITKIIQDPTSSTSKLVLDNYVDISRLLSISAKEGH 59
           M S+WV  KL S+ P C S+++SP    I Q P    S  +L N+VD+S LLSI  +EG 
Sbjct: 1   MNSRWVIQKLTSHLPSCLSTVLSPSKILIRQSPNYQVSTFLL-NHVDMSLLLSICGREGW 59

Query: 60  F-HLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMR 118
           F HLGP LHAS IK  E F+  +     NA V+WNSLLS Y KC ++ +A+KLFD+MPMR
Sbjct: 60  FPHLGPCLHASIIKNPEFFEPVDADIHRNALVVWNSLLSLYAKCGKLVDAIKLFDEMPMR 119

Query: 119 DTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMI 178
           D +S N +  GFLRN E + GF   KR L  G +  D A+ TI+LS CD  E  LV+KMI
Sbjct: 120 DVISQNIVFYGFLRNRETESGFVLLKRMLGSGGF--DHATLTIVLSVCDTPEFCLVTKMI 177

Query: 179 HCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLY 238
           H L  L GY++E++VGN LITSYFKCG S SGR VF  M  RNVIT TAVISGL++N+L+
Sbjct: 178 HALAILSGYDKEISVGNKLITSYFKCGCSVSGRGVFDGMSHRNVITLTAVISGLIENELH 237

Query: 239 EEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESAL 298
           E+GL+LF  M  GL++PNS+TYLS++ ACSG Q + EG+QIH +LWK  ++S+LCIESAL
Sbjct: 238 EDGLRLFSLMRRGLVHPNSVTYLSALAACSGSQRIVEGQQIHALLWKYGIESELCIESAL 297

Query: 299 MDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDP 358
           MDMYSKCGS+EDAW IFE   E+D VSMTVILVG AQNG EEEA+Q F++M++AG+EID 
Sbjct: 298 MDMYSKCGSIEDAWTIFESTTEVDEVSMTVILVGLAQNGSEEEAIQFFIRMLQAGVEIDA 357

Query: 359 NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSR 418
           N+VSAVLGV  +D SLGLGKQ+HSL+IK  F+ N FVNNGLINMYSKCGDL DS  VF R
Sbjct: 358 NVVSAVLGVSFIDNSLGLGKQLHSLVIKRKFSGNTFVNNGLINMYSKCGDLTDSQTVFRR 417

Query: 419 MAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKG 478
           M  RN VSWNSMIAAFARHG+G  AL+LYEEM    V+PTDVTFLSLLHACSHVGL++KG
Sbjct: 418 MPKRNYVSWNSMIAAFARHGHGLAALKLYEEMTTLEVKPTDVTFLSLLHACSHVGLIDKG 477

Query: 479 MEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACS 538
            E L  M EVH I PR EHY C++DM+GRAGLL EA+SFI+ +P+KPD  +WQALLGACS
Sbjct: 478 RELLNEMKEVHGIEPRTEHYTCIIDMLGRAGLLKEAKSFIDSLPLKPDCKIWQALLGACS 537

Query: 539 IHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGI 598
            HGD+E+G+YAAE+LF   PDS + +IL+ANIYS  G+WKERAK IKRMK MGV KETGI
Sbjct: 538 FHGDTEVGEYAAEQLFQTAPDSSSAHILIANIYSSRGKWKERAKTIKRMKAMGVTKETGI 597

Query: 599 SWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFIL 647
           S IEIE + HSFVV+DK+HPQA+ I+ VL+ L  +M+DEGY P+KRFIL
Sbjct: 598 SSIEIEHKTHSFVVEDKLHPQAEAIYDVLSGLFPVMVDEGYRPDKRFIL 646

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297833250|ref|XP_002884507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297330347|gb|EFH60766.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  830 bits (2143), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/638 (63%), Positives = 496/638 (77%), Gaps = 5/638 (0%)

Query: 1   MKSKWVFLKLNSNFPFC-SSLVSPFITKIIQDPTSSTSKLVLDNYVDISRLLSISAKEGH 59
           M S+WV  KL S+ P C S+++SP    I Q P+   S  +L N+VD+S LLSI  +EG 
Sbjct: 1   MNSRWVIQKLTSHLPSCFSTVLSPSKILIRQSPSYQVSTFLL-NHVDMSLLLSICGREGW 59

Query: 60  F-HLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMR 118
           F +LGP LHAS +K  E FD  +     NA V+WNSLLS Y+KC ++ +A+KLFD+MP+R
Sbjct: 60  FPYLGPCLHASIVKNPEFFDPVDADIHRNALVVWNSLLSLYVKCGKLGDALKLFDEMPVR 119

Query: 119 DTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMI 178
           D +S N +  GFLRN E + GF   KR L  G +  DQA+ TI+LS CD  E  LV+KMI
Sbjct: 120 DVISQNIVFYGFLRNRETESGFVLLKRMLGSGGF--DQATLTIVLSVCDTPEFCLVTKMI 177

Query: 179 HCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLY 238
           H L  L GY++E++VGN LITSYFKCG S SGR VF EM  RNVITWTAVISGL++N+L+
Sbjct: 178 HALAILSGYDKEISVGNKLITSYFKCGCSVSGRWVFSEMAHRNVITWTAVISGLIENELH 237

Query: 239 EEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESAL 298
           E+GL+LF  M  GL++PNS+TYLS++ ACSG Q + EG+QIH +LWK  ++S+LCIESAL
Sbjct: 238 EDGLRLFCLMRRGLVHPNSVTYLSALAACSGSQMIVEGQQIHALLWKFGIESELCIESAL 297

Query: 299 MDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDP 358
           MDMYSKCGS+EDAW+IFE ++E+D VSMTVILVG AQNG EEEA+Q F++M++AG+EID 
Sbjct: 298 MDMYSKCGSIEDAWKIFESSQEVDEVSMTVILVGLAQNGSEEEAIQFFIRMLQAGVEIDA 357

Query: 359 NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSR 418
           N+VSA+LGV  VD SLGLGKQ+HSL+IK  F  N FVNNGLINMYSKCGDL DS  VF R
Sbjct: 358 NVVSAILGVSFVDNSLGLGKQLHSLVIKRKFCGNTFVNNGLINMYSKCGDLTDSQTVFRR 417

Query: 419 MAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKG 478
           M  RN VSWNSMIAAFARHG+G  AL+LYEEM    V+PTDVTFLSLLHACSHVGL++KG
Sbjct: 418 MPKRNYVSWNSMIAAFARHGHGLAALKLYEEMTTLEVKPTDVTFLSLLHACSHVGLIDKG 477

Query: 479 MEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACS 538
            E L  M EVH I PR EHY C++DM+GRAGL+ EA+SFI+ +P+KPD  +WQALLGACS
Sbjct: 478 RELLNEMKEVHGIKPRTEHYTCIIDMLGRAGLMKEAKSFIDSLPLKPDCKIWQALLGACS 537

Query: 539 IHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGI 598
            HGD+E+G+YAAE+LF   PDS A +ILMANIYS  G+WKERAK IKRMKEMGV KETGI
Sbjct: 538 FHGDTEVGEYAAEQLFETAPDSSAAHILMANIYSSRGKWKERAKTIKRMKEMGVTKETGI 597

Query: 599 SWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMID 636
           SWIE+EK+ HSFVV+DKMHPQA+ I+ VL+ L  + +D
Sbjct: 598 SWIEMEKKTHSFVVEDKMHPQAEAIYDVLSGLFPVTVD 635

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542634|ref|XP_002512380.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223548341|gb|EEF49832.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score =  713 bits (1841), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/454 (74%), Positives = 393/454 (86%)

Query: 195 NALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLIN 254
           N +++ + + G   +GR+VF EM  RNVITWTA+ISGL QN++YE+ L LFV+M  GLI 
Sbjct: 27  NTMVSGFLRNGDLDTGRQVFDEMLERNVITWTAIISGLSQNEMYEDSLGLFVQMRCGLIE 86

Query: 255 PNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQI 314
           PN LTYLSS+ ACSGLQAL +GRQIHG++WKL +QS+LCIESALMD+YSKCGS+EDA ++
Sbjct: 87  PNFLTYLSSLTACSGLQALEKGRQIHGLVWKLGIQSNLCIESALMDLYSKCGSLEDARRV 146

Query: 315 FEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSL 374
           FE A ELD VSMTVILVGF QNGFEEEA++ FVKMV  G E+DPNMVSAVLG  GVDTSL
Sbjct: 147 FESAVELDEVSMTVILVGFTQNGFEEEAIEFFVKMVNIGTEVDPNMVSAVLGACGVDTSL 206

Query: 375 GLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAF 434
           GLGKQIHSL+IK    SNPFV NGLINMYSKCG+L++SIKVF+ +  RNSVSWNSMIAAF
Sbjct: 207 GLGKQIHSLVIKRSLGSNPFVGNGLINMYSKCGELQESIKVFNGLTCRNSVSWNSMIAAF 266

Query: 435 ARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR 494
           ARHG+GF+AL LYEEM  EG  PTD+TFLSLLHACSHVGLV+KGM+FLKSMT+V+ ISPR
Sbjct: 267 ARHGDGFRALRLYEEMIQEGAVPTDLTFLSLLHACSHVGLVDKGMKFLKSMTKVYGISPR 326

Query: 495 AEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLF 554
           AEHYACVVDM+GRAGLL EA+S IER+ +KPDVL+WQALLGACSI GD+E+GKYAAE+L 
Sbjct: 327 AEHYACVVDMLGRAGLLNEAKSLIERLSIKPDVLIWQALLGACSIRGDTEIGKYAAEQLL 386

Query: 555 LAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDD 614
           L +P  PAPY+L+ANIYS  GRW ERA+ IKRMKEMGV KETGISWIEIEK+VHSFVV+D
Sbjct: 387 LLEPKKPAPYVLLANIYSSKGRWDERARTIKRMKEMGVAKETGISWIEIEKKVHSFVVED 446

Query: 615 KMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           K HPQA+ I+GVLAEL RLMIDEGYVP+KRFIL+
Sbjct: 447 KKHPQAEIIYGVLAELFRLMIDEGYVPDKRFILY 480

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504050|ref|XP_003520812.1| PREDICTED: pentatricopeptide repeat-containing protein At3g05340-like [Glycine max]

 Score =  696 bits (1797), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/454 (71%), Positives = 391/454 (86%)

Query: 195 NALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLIN 254
           NA+I+ + +     +GR+VF EM  RNV+TWTAVISGL QN+ YE+GL+LF +M  G ++
Sbjct: 27  NAIISGFLRNRDCDTGRQVFDEMLERNVVTWTAVISGLAQNEFYEDGLRLFDQMRRGSVS 86

Query: 255 PNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQI 314
           PNSLTYLS++MACSGLQAL EGR+IHG+LWKL +QSDLCIESALMD+YSKCGS+E+AW+I
Sbjct: 87  PNSLTYLSALMACSGLQALLEGRKIHGLLWKLGMQSDLCIESALMDLYSKCGSLEEAWEI 146

Query: 315 FEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSL 374
           FE AEELD VS+TVILV F QNG EEEA+Q+F++MVK GIE+DPNMVSA+LGVFGV TSL
Sbjct: 147 FESAEELDDVSLTVILVAFMQNGLEEEAIQIFMRMVKLGIEVDPNMVSAILGVFGVGTSL 206

Query: 375 GLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAF 434
            LGKQIHSLIIK +F  N FV+NGLINMYSKCGDL DS++VF  M  +NSVSWNS+IAA+
Sbjct: 207 TLGKQIHSLIIKKNFIQNLFVSNGLINMYSKCGDLYDSLQVFHEMTQKNSVSWNSVIAAY 266

Query: 435 ARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR 494
           AR+G+GF+AL+ Y++M++EG+  TDVTFLSLLHACSH GLV KGMEFL+SMT  H +SPR
Sbjct: 267 ARYGDGFRALQFYDDMRVEGIALTDVTFLSLLHACSHAGLVEKGMEFLESMTRDHGLSPR 326

Query: 495 AEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLF 554
           +EHYACVVDM+GRAGLL EA+ FIE +P  P VLVWQALLGACSIHGDSEMGKYAA +LF
Sbjct: 327 SEHYACVVDMLGRAGLLKEAKKFIEGLPENPGVLVWQALLGACSIHGDSEMGKYAANQLF 386

Query: 555 LAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDD 614
           LA PDSPAPY+LMANIYS  G+WKERA++IK+MKEMGV KE GISW+EIEK+V+SFVV D
Sbjct: 387 LATPDSPAPYVLMANIYSSEGKWKERARSIKKMKEMGVAKEVGISWVEIEKKVNSFVVGD 446

Query: 615 KMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           KMHPQAD I  +L+ LL+ + DEGYVP+KR IL+
Sbjct: 447 KMHPQADAIFWLLSRLLKHLKDEGYVPDKRCILY 480

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442815|ref|XP_004139176.1| PREDICTED: pentatricopeptide repeat-containing protein At3g05340-like [Cucumis sativus]

 Score =  654 bits (1687), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/462 (68%), Positives = 378/462 (81%), Gaps = 8/462 (1%)

Query: 195 NALI-------TSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVK 247
           NALI        SYFKCG    G +VF EM  RNVITWTAVISGL QN  +E  LKLF +
Sbjct: 119 NALIGGFVRNGNSYFKCGCVGLGMQVFYEMGERNVITWTAVISGLAQNGYHEHSLKLFKE 178

Query: 248 M-HLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCG 306
           M   G + PNSLTYLS + ACSGL+AL EG QIHG++ KL +QSDLCI SALMDMYSK G
Sbjct: 179 MMSYGSVEPNSLTYLSLLTACSGLEALKEGCQIHGLIMKLGIQSDLCIGSALMDMYSKSG 238

Query: 307 SVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLG 366
            + +AW+IFE AEELD VS+TVIL GF  NG EEEA+Q+F+KM+K GIEID N+VS VLG
Sbjct: 239 RIGEAWKIFELAEELDMVSLTVILAGFTHNGCEEEAIQIFLKMLKMGIEIDGNVVSVVLG 298

Query: 367 VFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVS 426
           VFG DTSL LG+Q+HS ++K +F  NPFV+NGLINMYSKCG L++S+KVF RM  RNSV+
Sbjct: 299 VFGADTSLRLGQQVHSFVVKKNFICNPFVSNGLINMYSKCGALDESMKVFDRMRERNSVT 358

Query: 427 WNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMT 486
           WNSMIAAFARHG+  KAL+LYE+M+LEG +PTDVTFLSLLHACSH GLV KGMEFLKSMT
Sbjct: 359 WNSMIAAFARHGDALKALQLYEDMQLEGAKPTDVTFLSLLHACSHAGLVKKGMEFLKSMT 418

Query: 487 EVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMG 546
           + H ++PR+EH+ACVVDM+GRAG+L EAR+FIE++P +P +LVWQALLGACS++GDS++G
Sbjct: 419 KDHGMNPRSEHHACVVDMLGRAGMLSEARNFIEKLPEQPGLLVWQALLGACSLYGDSKIG 478

Query: 547 KYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQ 606
           KYAAE LF   PDSP PY+L+ANIYS  G WKERA+ I++MKE+G  KETGISWIEI+K+
Sbjct: 479 KYAAEHLFSETPDSPVPYVLLANIYSSEGNWKERARTIRKMKEVGTAKETGISWIEIDKK 538

Query: 607 VHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
           VHSF V DKMHPQ + I+GVL EL  LM+DEGYVP+K+FIL+
Sbjct: 539 VHSFTVGDKMHPQTEMIYGVLWELFILMVDEGYVPDKKFILY 580

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	648
TAIR|locus:2096299	658	AT3G05340 "AT3G05340" [Arabido	0.989	0.974	0.630	1.9e-216
TAIR|locus:2178188	995	MEF7 "AT5G09950" [Arabidopsis	0.856	0.557	0.375	7.3e-105
TAIR|locus:2124137	871	DOT4 "DEFECTIVELY ORGANIZED TR	0.924	0.687	0.346	3.4e-100
TAIR|locus:2038603	868	AT2G27610 "AT2G27610" [Arabido	0.908	0.678	0.351	9.1e-100
TAIR|locus:2119440	1064	AT4G13650 [Arabidopsis thalian	0.845	0.515	0.361	1.5e-99
TAIR|locus:2057630	727	AT2G33680 "AT2G33680" [Arabido	0.839	0.748	0.388	6.4e-99
TAIR|locus:2082886	850	EMB2261 "embryo defective 2261	0.850	0.648	0.375	3.5e-98
TAIR|locus:2141171	857	AT4G21300 [Arabidopsis thalian	0.918	0.694	0.362	3.2e-97
TAIR|locus:2083631	689	AT3G15130 "AT3G15130" [Arabido	0.856	0.805	0.358	1.2e-95
TAIR|locus:2140235	781	AT4G02750 [Arabidopsis thalian	0.850	0.705	0.351	2e-95

TAIR|locus:2096299 AT3G05340 "AT3G05340" [Arabidopsis thaliana (taxid:3702)]

 Score = 2091 (741.1 bits), Expect = 1.9e-216, P = 1.9e-216
 Identities = 411/652 (63%), Positives = 500/652 (76%)

Query:     1 MKSKWVFLKLNSNFPFC-SSLVSPFITKIIQDPTSSTSKLVLDNYVDISRLLSISAKEGH 59
             M S+WV  KL S+ P C S+++SP    I Q P    S  +L N+VD+S LLSI  +EG 
Sbjct:     1 MNSRWVIQKLTSHLPSCLSTVLSPSKILIRQSPNYQVSTFLL-NHVDMSLLLSICGREGW 59

Query:    60 F-HLGPSLHASFIKT---FEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDM 115
             F HLGP LHAS IK    FEP D  +++   NA V+WNSLLS Y KC ++ +A+KLFD+M
Sbjct:    60 FPHLGPCLHASIIKNPEFFEPVD-ADIHR--NALVVWNSLLSLYAKCGKLVDAIKLFDEM 116

Query:   116 PMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVS 175
             PMRD +S N +  GFLRN E + GF   KR L  G +  D A+ TI+LS CD  E  LV+
Sbjct:   117 PMRDVISQNIVFYGFLRNRETESGFVLLKRMLGSGGF--DHATLTIVLSVCDTPEFCLVT 174

Query:   176 KMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQN 235
             KMIH L  L GY++E++VGN LITSYFKCG S SGR VF  M  RNVIT TAVISGL++N
Sbjct:   175 KMIHALAILSGYDKEISVGNKLITSYFKCGCSVSGRGVFDGMSHRNVITLTAVISGLIEN 234

Query:   236 QLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIE 295
             +L+E+GL+LF  M  GL++PNS+TYLS++ ACSG Q + EG+QIH +LWK  ++S+LCIE
Sbjct:   235 ELHEDGLRLFSLMRRGLVHPNSVTYLSALAACSGSQRIVEGQQIHALLWKYGIESELCIE 294

Query:   296 SALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIE 355
             SALMDMYSKCGS+EDAW IFE   E+D VSMTVILVG AQNG EEEA+Q F++M++AG+E
Sbjct:   295 SALMDMYSKCGSIEDAWTIFESTTEVDEVSMTVILVGLAQNGSEEEAIQFFIRMLQAGVE 354

Query:   356 IDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKV 415
             ID N+VSAVLGV  +D SLGLGKQ+HSL+IK  F+ N FVNNGLINMYSKCGDL DS  V
Sbjct:   355 IDANVVSAVLGVSFIDNSLGLGKQLHSLVIKRKFSGNTFVNNGLINMYSKCGDLTDSQTV 414

Query:   416 FSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLV 475
             F RM  RN VSWNSMIAAFARHG+G  AL+LYEEM    V+PTDVTFLSLLHACSHVGL+
Sbjct:   415 FRRMPKRNYVSWNSMIAAFARHGHGLAALKLYEEMTTLEVKPTDVTFLSLLHACSHVGLI 474

Query:   476 NKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLG 535
             +KG E L  M EVH I PR EHY C++DM+GRAGLL EA+SFI+ +P+KPD  +WQALLG
Sbjct:   475 DKGRELLNEMKEVHGIEPRTEHYTCIIDMLGRAGLLKEAKSFIDSLPLKPDCKIWQALLG 534

Query:   536 ACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKE 595
             ACS HGD+E+G+YAAE+LF   PDS + +IL+ANIYS  G+WKERAK IKRMK MGV KE
Sbjct:   535 ACSFHGDTEVGEYAAEQLFQTAPDSSSAHILIANIYSSRGKWKERAKTIKRMKAMGVTKE 594

Query:   596 TGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFIL 647
             TGIS IEIE + HSFVV+DK+HPQA+ I+ VL+ L  +M+DEGY P+KRFIL
Sbjct:   595 TGISSIEIEHKTHSFVVEDKLHPQAEAIYDVLSGLFPVMVDEGYRPDKRFIL 646

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2178188 MEF7 "AT5G09950" [Arabidopsis thaliana (taxid:3702)]

 Score = 998 (356.4 bits), Expect = 7.3e-105, Sum P(2) = 7.3e-105
 Identities = 212/565 (37%), Positives = 336/565 (59%)

Query:    91 IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
             I N L++ Y KC  + +A ++F  M  +D+VSWN+M++G  +NG F      +K S+   
Sbjct:   351 IGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYK-SMRR- 408

Query:   151 FYQLDQASFTII--LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS 208
              + +   SFT+I  LS+C   + + + + IH      G +  V+V NAL+T Y + G  +
Sbjct:   409 -HDILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLN 467

Query:   209 SGRKVFGEMRVRNVITWTAVISGLVQNQL-YEEGLKLFVKMHLGLINPNSLTYLSSVMAC 267
               RK+F  M   + ++W ++I  L +++    E +  F+         N +T+ S + A 
Sbjct:   468 ECRKIFSSMPEHDQVSWNSIIGALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAV 527

Query:   268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFE-FAEELDGVSM 326
             S L     G+QIHG+  K  +  +   E+AL+  Y KCG ++   +IF   AE  D V+ 
Sbjct:   528 SSLSFGELGKQIHGLALKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTW 587

Query:   327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK 386
               ++ G+  N    +A+ L   M++ G  +D  M + VL  F    +L  G ++H+  ++
Sbjct:   588 NSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVR 647

Query:   387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
             +   S+  V + L++MYSKCG L+ +++ F+ M  RNS SWNSMI+ +ARHG G +AL+L
Sbjct:   648 ACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKL 707

Query:   447 YEEMKLEGVEPTD-VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMV 505
             +E MKL+G  P D VTF+ +L ACSH GL+ +G +  +SM++ + ++PR EH++C+ D++
Sbjct:   708 FETMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVL 767

Query:   506 GRAGLLIEARSFIERMPVKPDVLVWQALLGACS-IHG-DSEMGKYAAEKLFLAQPDSPAP 563
             GRAG L +   FIE+MP+KP+VL+W+ +LGAC   +G  +E+GK AAE LF  +P++   
Sbjct:   768 GRAGELDKLEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVN 827

Query:   564 YILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTI 623
             Y+L+ N+Y+  GRW++  KA K+MK+  V KE G SW+ ++  VH FV  DK HP AD I
Sbjct:   828 YVLLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDADVI 887

Query:   624 HGVLAELLRLMIDEGYVPNKRFILH 648
             +  L EL R M D GYVP   F L+
Sbjct:   888 YKKLKELNRKMRDAGYVPQTGFALY 912

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009451 "RNA modification" evidence=IMP

TAIR|locus:2124137 DOT4 "DEFECTIVELY ORGANIZED TRIBUTARIES 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 994 (355.0 bits), Expect = 3.4e-100, P = 3.4e-100
 Identities = 213/614 (34%), Positives = 355/614 (57%)

Query:    36 TSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSL 95
             +S + +D+Y       S S+     H G  LH   +K+   F  +N         + NSL
Sbjct:   188 SSGVEMDSYTFSCVSKSFSSLRS-VHGGEQLHGFILKS--GFGERNS--------VGNSL 236

Query:    96 LSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLD 155
             ++FYLK  ++ +A K+FD+M  RD +SWN++++G++ NG  + G   F + L  G  ++D
Sbjct:   237 VAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGI-EID 295

Query:   156 QASFTIILSACDRSELSLVSKMIHCL-VYLCGYEEEVTVGNALITSYFKCGSSSSGRKVF 214
              A+   + + C  S L  + + +H + V  C +  E    N L+  Y KCG   S + VF
Sbjct:   296 LATIVSVFAGCADSRLISLGRAVHSIGVKAC-FSREDRFCNTLLDMYSKCGDLDSAKAVF 354

Query:   215 GEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALC 274
              EM  R+V+++T++I+G  +  L  E +KLF +M    I+P+  T  + +  C+  + L 
Sbjct:   355 REMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLD 414

Query:   275 EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFA 334
             EG+++H  + +  L  D+ + +ALMDMY+KCGS+++A  +F      D +S   I+ G++
Sbjct:   415 EGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYS 474

Query:   335 QNGFEEEAMQLF-VKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNP 393
             +N +  EA+ LF + + +     D   V+ VL      ++   G++IH  I+++ + S+ 
Sbjct:   475 KNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDR 534

Query:   394 FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE 453
              V N L++MY+KCG L  +  +F  +A ++ VSW  MIA +  HG G +A+ L+ +M+  
Sbjct:   535 HVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQA 594

Query:   454 GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIE 513
             G+E  +++F+SLL+ACSH GLV++G  F   M    +I P  EHYAC+VDM+ R G LI+
Sbjct:   595 GIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIK 654

Query:   514 ARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSC 573
             A  FIE MP+ PD  +W ALL  C IH D ++ +  AEK+F  +P++   Y+LMANIY+ 
Sbjct:   655 AYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAE 714

Query:   574 SGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRL 633
             + +W++  +  KR+ + G+ K  G SWIEI+ +V+ FV  D  +P+ + I   L ++   
Sbjct:   715 AEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRAR 774

Query:   634 MIDEGYVPNKRFIL 647
             MI+EGY P  ++ L
Sbjct:   775 MIEEGYSPLTKYAL 788

GO:0009507 "chloroplast" evidence=ISM

GO:0010087 "phloem or xylem histogenesis" evidence=IMP

GO:0010305 "leaf vascular tissue pattern formation" evidence=IMP

GO:0010588 "cotyledon vascular tissue pattern formation" evidence=IMP

GO:0048366 "leaf development" evidence=IMP

TAIR|locus:2038603 AT2G27610 "AT2G27610" [Arabidopsis thaliana (taxid:3702)]

 Score = 990 (353.6 bits), Expect = 9.1e-100, P = 9.1e-100
 Identities = 214/608 (35%), Positives = 347/608 (57%)

Query:    43 NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
             N    +  L + A+EG    G  +H   +K     D      +P    + NSL++ YLKC
Sbjct:   193 NSFTFAAALGVLAEEGVGGRGLQVHTVVVKN--GLDK----TIP----VSNSLINLYLKC 242

Query:   103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDM-GFGFFKRSLELGFYQLDQASFTI 161
               +R A  LFD   ++  V+WN+M+SG+  NG  D+   G F  S+ L + +L ++SF  
Sbjct:   243 GNVRKARILFDKTEVKSVVTWNSMISGYAANG-LDLEALGMFY-SMRLNYVRLSESSFAS 300

Query:   162 ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR-VR 220
             ++  C   +    ++ +HC V   G+  +  +  AL+ +Y KC +     ++F E+  V 
Sbjct:   301 VIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVG 360

Query:   221 NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIH 280
             NV++WTA+ISG +QN   EE + LF +M    + PN  TY  SV+  + L  +    ++H
Sbjct:   361 NVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTY--SVIL-TALPVISPS-EVH 416

Query:   281 GILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEE 340
               + K   +    + +AL+D Y K G VE+A ++F   ++ D V+ + +L G+AQ G  E
Sbjct:   417 AQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETE 476

Query:   341 EAMQLFVKMVKAGIEIDPNMVSAVLGVFGV-DTSLGLGKQIHSLIIKSDFTSNPFVNNGL 399
              A+++F ++ K GI+ +    S++L V    + S+G GKQ H   IKS   S+  V++ L
Sbjct:   477 AAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSAL 536

Query:   400 INMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD 459
             + MY+K G++E + +VF R   ++ VSWNSMI+ +A+HG   KAL++++EMK   V+   
Sbjct:   537 LTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDG 596

Query:   460 VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIE 519
             VTF+ +  AC+H GLV +G ++   M    +I+P  EH +C+VD+  RAG L +A   IE
Sbjct:   597 VTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIE 656

Query:   520 RMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKE 579
              MP      +W+ +L AC +H  +E+G+ AAEK+   +P+  A Y+L++N+Y+ SG W+E
Sbjct:   657 NMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQE 716

Query:   580 RAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGY 639
             RAK  K M E  V KE G SWIE++ + +SF+  D+ HP  D I+  L +L   + D GY
Sbjct:   717 RAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGY 776

Query:   640 VPNKRFIL 647
              P+  ++L
Sbjct:   777 EPDTSYVL 784

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2119440 AT4G13650 [Arabidopsis thaliana (taxid:3702)]

 Score = 988 (352.9 bits), Expect = 1.5e-99, P = 1.5e-99
 Identities = 199/551 (36%), Positives = 322/551 (58%)

Query:    91 IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG 150
             I  +LL+ Y KC  +  A+  F +  + + V WN M+  +    +    F  F R +++ 
Sbjct:   426 IEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIF-RQMQIE 484

Query:   151 FYQLDQASFTIILSACDR-SELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS 209
                 +Q ++  IL  C R  +L L  + IH  +    ++    V + LI  Y K G   +
Sbjct:   485 EIVPNQYTYPSILKTCIRLGDLEL-GEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDT 543

Query:   210 GRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG 269
                +      ++V++WT +I+G  Q    ++ L  F +M    I  + +   ++V AC+G
Sbjct:   544 AWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAG 603

Query:   270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI 329
             LQAL EG+QIH         SDL  ++AL+ +YS+CG +E+++  FE  E  D ++   +
Sbjct:   604 LQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNAL 663

Query:   330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
             + GF Q+G  EEA+++FV+M + GI+ +     + +       ++  GKQ+H++I K+ +
Sbjct:   664 VSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGY 723

Query:   390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
              S   V N LI+MY+KCG + D+ K F  ++ +N VSWN++I A+++HG G +AL+ +++
Sbjct:   724 DSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQ 783

Query:   450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
             M    V P  VT + +L ACSH+GLV+KG+ + +SM   + +SP+ EHY CVVDM+ RAG
Sbjct:   784 MIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAG 843

Query:   510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMAN 569
             LL  A+ FI+ MP+KPD LVW+ LL AC +H + E+G++AA  L   +P+  A Y+L++N
Sbjct:   844 LLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSN 903

Query:   570 IYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAE 629
             +Y+ S +W  R    ++MKE GV KE G SWIE++  +HSF V D+ HP AD IH    +
Sbjct:   904 LYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQD 963

Query:   630 LLRLMIDEGYV 640
             L +   + GYV
Sbjct:   964 LTKRASEIGYV 974

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2057630 AT2G33680 "AT2G33680" [Arabidopsis thaliana (taxid:3702)]

 Score = 982 (350.7 bits), Expect = 6.4e-99, P = 6.4e-99
 Identities = 214/551 (38%), Positives = 311/551 (56%)

Query:    94 SLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMG---FGFFKRSLELG 150
             SL+  Y K   + + +K+F  MP R+T +W+TMVSG+   G  +     F  F R  E G
Sbjct:   158 SLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFLREKEEG 217

Query:   151 FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG 210
                 D   FT +LS+   +    + + IHC+    G    V + NAL+T Y KC S +  
Sbjct:   218 S-DSDYV-FTAVLSSLAATIYVGLGRQIHCITIKNGLLGFVALSNALVTMYSKCESLNEA 275

Query:   211 RKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL 270
              K+F     RN ITW+A+++G  QN    E +KLF +M    I P+  T +  + ACS +
Sbjct:   276 CKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDI 335

Query:   271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVIL 330
               L EG+Q+H  L KL  +  L   +AL+DMY+K G + DA + F+  +E D    T ++
Sbjct:   336 CYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLI 395

Query:   331 VGFAQNGFEEEAMQLFVKMVKAGI-EIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
              G+ QN   EEA+ L+ +M  AGI   DP M S +     + T L LGKQ+H   IK  F
Sbjct:   396 SGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLAT-LELGKQVHGHTIKHGF 454

Query:   390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
                  + + L  MYSKCG LED   VF R   ++ VSWN+MI+  + +G G +ALEL+EE
Sbjct:   455 GLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEE 514

Query:   450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG 509
             M  EG+EP DVTF++++ ACSH G V +G  +   M++   + P+ +HYAC+VD++ RAG
Sbjct:   515 MLAEGMEPDDVTFVNIISACSHKGFVERGWFYFNMMSDQIGLDPKVDHYACMVDLLSRAG 574

Query:   510 LLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMAN 569
              L EA+ FIE   +   + +W+ LL AC  HG  E+G YA EKL        + Y+ ++ 
Sbjct:   575 QLKEAKEFIESANIDHGLCLWRILLSACKNHGKCELGVYAGEKLMALGSRESSTYVQLSG 634

Query:   570 IYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAE 629
             IY+  GR ++  +  K M+  GV KE G SWIE++ Q H FVV D MHP  +    ++  
Sbjct:   635 IYTALGRMRDVERVWKHMRANGVSKEVGCSWIELKNQYHVFVVGDTMHPMIEETKDLVCL 694

Query:   630 LLRLMIDEGYV 640
             + R MI+EG+V
Sbjct:   695 VSRQMIEEGFV 705

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2082886 EMB2261 "embryo defective 2261" [Arabidopsis thaliana (taxid:3702)]

 Score = 975 (348.3 bits), Expect = 3.5e-98, P = 3.5e-98
 Identities = 211/562 (37%), Positives = 326/562 (58%)

Query:    94 SLLSFYLKCDQ-MRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
             SL+  ++K +    NA K+FD M   + V+W  M++  ++ G       FF   +  GF 
Sbjct:   207 SLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGF- 265

Query:   153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKC---GSSSS 209
             + D+ + + + SAC   E   + K +H      G  ++V    +L+  Y KC   GS   
Sbjct:   266 ESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDDVEC--SLVDMYAKCSADGSVDD 323

Query:   210 GRKVFGEMRVRNVITWTAVISGLVQN-QLYEEGLKLFVKMHL-GLINPNSLTYLSSVMAC 267
              RKVF  M   +V++WTA+I+G ++N  L  E + LF +M   G + PN  T+ S+  AC
Sbjct:   324 CRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKAC 383

Query:   268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT 327
               L     G+Q+ G  +K  L S+  + ++++ M+ K   +EDA + FE   E + VS  
Sbjct:   384 GNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYN 443

Query:   328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVL-GVFGVDTSLGLGKQIHSLIIK 386
               L G  +N   E+A +L  ++ +  + +     +++L GV  V  S+  G+QIHS ++K
Sbjct:   444 TFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVG-SIRKGEQIHSQVVK 502

Query:   387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALEL 446
                + N  V N LI+MYSKCG ++ + +VF+ M  RN +SW SMI  FA+HG   + LE 
Sbjct:   503 LGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLET 562

Query:   447 YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506
             + +M  EGV+P +VT++++L ACSHVGLV++G     SM E H+I P+ EHYAC+VD++ 
Sbjct:   563 FNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLC 622

Query:   507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYIL 566
             RAGLL +A  FI  MP + DVLVW+  LGAC +H ++E+GK AA K+    P+ PA YI 
Sbjct:   623 RAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQ 682

Query:   567 MANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGV 626
             ++NIY+C+G+W+E  +  ++MKE  + KE G SWIE+  ++H F V D  HP A  I+  
Sbjct:   683 LSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDE 742

Query:   627 LAELLRLMIDEGYVPNKRFILH 648
             L  L+  +   GYVP+   +LH
Sbjct:   743 LDRLITEIKRCGYVPDTDLVLH 764

GO:0009507 "chloroplast" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP;NAS

TAIR|locus:2141171 AT4G21300 [Arabidopsis thaliana (taxid:3702)]

 Score = 966 (345.1 bits), Expect = 3.2e-97, P = 3.2e-97
 Identities = 220/607 (36%), Positives = 331/607 (54%)

Query:    43 NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKC 102
             N V    +LS+ A +    LG  LH   + +   F+            I NSLLS Y KC
Sbjct:   238 NAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGS----------IKNSLLSMYSKC 287

Query:   103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII 162
              +  +A KLF  M   DTV+WN M+SG++++G  +    FF   +  G    D  +F+ +
Sbjct:   288 GRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLP-DAITFSSL 346

Query:   163 LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNV 222
             L +  + E     K IHC +       ++ + +ALI +YFKC   S  + +F +    +V
Sbjct:   347 LPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDV 406

Query:   223 ITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGI 282
             + +TA+ISG + N LY + L++F  +    I+PN +T +S +     L AL  GR++HG 
Sbjct:   407 VVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRELHGF 466

Query:   283 LWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEA 342
             + K    +   I  A++DMY+KCG +  A++IFE   + D VS   ++   AQ+     A
Sbjct:   467 IIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAA 526

Query:   343 MQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINM 402
             + +F +M  +GI  D   +SA L       S   GK IH  +IK    S+ +  + LI+M
Sbjct:   527 IDIFRQMGVSGICYDCVSISAALSACANLPSESFGKAIHGFMIKHSLASDVYSESTLIDM 586

Query:   403 YSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM-KLEGVEPTDVT 461
             Y+KCG+L+ ++ VF  M  +N VSWNS+IAA   HG    +L L+ EM +  G+ P  +T
Sbjct:   587 YAKCGNLKAAMNVFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQIT 646

Query:   462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM 521
             FL ++ +C HVG V++G+ F +SMTE + I P+ EHYACVVD+ GRAG L EA   ++ M
Sbjct:   647 FLEIISSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSM 706

Query:   522 PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERA 581
             P  PD  VW  LLGAC +H + E+ + A+ KL    P +   Y+L++N ++ +  W+   
Sbjct:   707 PFPPDAGVWGTLLGACRLHKNVELAEVASSKLMDLDPSNSGYYVLISNAHANAREWESVT 766

Query:   582 KAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVP 641
             K    MKE  V K  G SWIEI K+ H FV  D  HP++  I+ +L  LL  +  EGY+P
Sbjct:   767 KVRSLMKEREVQKIPGYSWIEINKRTHLFVSGDVNHPESSHIYSLLNSLLGELRLEGYIP 826

Query:   642 NKRFILH 648
                  LH
Sbjct:   827 QPYLPLH 833

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2083631 AT3G15130 "AT3G15130" [Arabidopsis thaliana (taxid:3702)]

 Score = 951 (339.8 bits), Expect = 1.2e-95, P = 1.2e-95
 Identities = 201/561 (35%), Positives = 308/561 (54%)

Query:    93 NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
             N L+  Y KC +   A K+FD MP R+ VSW+ ++SG + NG+       F      G Y
Sbjct:    45 NYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIY 104

Query:   153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
               ++ +F+  L AC           IH      G+E  V VGN+L+  Y KCG  +   K
Sbjct:   105 P-NEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEK 163

Query:   213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLIN--PNSLTYLSSVMACSGL 270
             VF  +  R++I+W A+I+G V      + L  F  M    I   P+  T  S + ACS  
Sbjct:   164 VFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSST 223

Query:   271 QALCEGRQIHGILWKLALQ--SDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV 328
               +  G+QIHG L +      S   I  +L+D+Y KCG +  A + F+  +E   +S + 
Sbjct:   224 GMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSS 283

Query:   329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD 388
             +++G+AQ G   EAM LF ++ +   +ID   +S+++GVF     L  GKQ+ +L +K  
Sbjct:   284 LILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQMQALAVKLP 343

Query:   389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYE 448
                   V N +++MY KCG ++++ K F+ M  ++ +SW  +I  + +HG G K++ ++ 
Sbjct:   344 SGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFY 403

Query:   449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
             EM    +EP +V +L++L ACSH G++ +G E    + E H I PR EHYACVVD++GRA
Sbjct:   404 EMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGIKPRVEHYACVVDLLGRA 463

Query:   509 GLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA 568
             G L EA+  I+ MP+KP+V +WQ LL  C +HGD E+GK   + L      +PA Y++M+
Sbjct:   464 GRLKEAKHLIDTMPIKPNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDAKNPANYVMMS 523

Query:   569 NIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLA 628
             N+Y  +G W E+  A +     G+ KE G+SW+EIE++VH F   +  HP    I   L 
Sbjct:   524 NLYGQAGYWNEQGNARELGNIKGLKKEAGMSWVEIEREVHFFRSGEDSHPLTPVIQETLK 583

Query:   629 ELLRLMIDE-GYVPNKRFILH 648
             E  R + +E GYV   +  LH
Sbjct:   584 EAERRLREELGYVYGLKHELH 604

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2140235 AT4G02750 [Arabidopsis thaliana (taxid:3702)]

 Score = 949 (339.1 bits), Expect = 2.0e-95, P = 2.0e-95
 Identities = 204/581 (35%), Positives = 333/581 (57%)

Query:    90 VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLE- 148
             V WN ++  Y++   +  A +LF+ MP RD  SWNTM+SG+ +NG  D     F R  E 
Sbjct:   127 VSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEK 186

Query:   149 --LGFYQLDQASF--TIILSAC----DRSELSLVS------------KMIHCLVYLCGYE 188
               + +  L  A    + +  AC     R   +LVS            K++    +     
Sbjct:   187 NDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMN 246

Query:   189 -EEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVK 247
               +V   N +IT Y + G     R++F E  V++V TWTA++SG +QN++ EE  +LF K
Sbjct:   247 VRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDK 306

Query:   248 MHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGS 307
             M       N +++  + M    +Q   E  ++   L+ +    ++   + ++  Y++CG 
Sbjct:   307 MP----ERNEVSW--NAMLAGYVQG--ERMEMAKELFDVMPCRNVSTWNTMITGYAQCGK 358

Query:   308 VEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGV 367
             + +A  +F+   + D VS   ++ G++Q+G   EA++LFV+M + G  ++ +  S+ L  
Sbjct:   359 ISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALST 418

Query:   368 FGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSW 427
                  +L LGKQ+H  ++K  + +  FV N L+ MY KCG +E++  +F  MA ++ VSW
Sbjct:   419 CADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSW 478

Query:   428 NSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTE 487
             N+MIA ++RHG G  AL  +E MK EG++P D T +++L ACSH GLV+KG ++  +MT+
Sbjct:   479 NTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQ 538

Query:   488 VHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGK 547
              + + P ++HYAC+VD++GRAGLL +A + ++ MP +PD  +W  LLGA  +HG++E+ +
Sbjct:   539 DYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAE 598

Query:   548 YAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQV 607
              AA+K+F  +P++   Y+L++N+Y+ SGRW +  K   RM++ GV K  G SWIEI+ + 
Sbjct:   599 TAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKT 658

Query:   608 HSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH 648
             H+F V D+ HP+ D I   L EL   M   GYV     +LH
Sbjct:   659 HTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLH 699

GO:0005739 "mitochondrion" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9MA85	PP215_ARATH	No assigned EC number	0.6302	0.9938	0.9787	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	648
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	1e-131
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	1e-126
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	4e-72
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	5e-37
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	1e-33
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	2e-14
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-12
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	3e-08
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	6e-08
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-06
pfam01535	31	pfam01535, PPR, PPR repeat	1e-06
pfam13041	50	pfam13041, PPR_2, PPR repeat family	3e-06
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	5e-06
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	1e-05
pfam13041	50	pfam13041, PPR_2, PPR repeat family	3e-05
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	3e-05
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	1e-04
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	2e-04
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	5e-04
pfam13041	50	pfam13041, PPR_2, PPR repeat family	0.002
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	0.002
pfam13041	50	pfam13041, PPR_2, PPR repeat family	0.003

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  407 bits (1047), Expect = e-131
 Identities = 199/537 (37%), Positives = 316/537 (58%), Gaps = 7/537 (1%)

Query: 93  NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFY 152
           N+L++ Y+KC  + +A  +FD MP RD +SWN M+SG+  NGE   G   F    EL   
Sbjct: 226 NALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMREL-SV 284

Query: 153 QLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK 212
             D  + T ++SAC+      + + +H  V   G+  +V+V N+LI  Y   GS     K
Sbjct: 285 DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEK 344

Query: 213 VFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA 272
           VF  M  ++ ++WTA+ISG  +N L ++ L+ +  M    ++P+ +T  S + AC+ L  
Sbjct: 345 VFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGD 404

Query: 273 LCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVG 332
           L  G ++H +  +  L S + + +AL++MYSKC  ++ A ++F    E D +S T I+ G
Sbjct: 405 LDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAG 464

Query: 333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSDFT 390
              N    EA+  F +M+   + + PN V+  A L       +L  GK+IH+ ++++   
Sbjct: 465 LRLNNRCFEALIFFRQML---LTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIG 521

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM 450
            + F+ N L+++Y +CG +  +   F+    ++ VSWN ++  +  HG G  A+EL+  M
Sbjct: 522 FDGFLPNALLDLYVRCGRMNYAWNQFNSHE-KDVVSWNILLTGYVAHGKGSMAVELFNRM 580

Query: 451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL 510
              GV P +VTF+SLL ACS  G+V +G+E+  SM E + I+P  +HYACVVD++GRAG 
Sbjct: 581 VESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGK 640

Query: 511 LIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI 570
           L EA +FI +MP+ PD  VW ALL AC IH   E+G+ AA+ +F   P+S   YIL+ N+
Sbjct: 641 LTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNL 700

Query: 571 YSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVL 627
           Y+ +G+W E A+  K M+E G+  + G SW+E++ +VH+F+ DD+ HPQ   I+ VL
Sbjct: 701 YADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVL 757

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  388 bits (999), Expect = e-126
 Identities = 190/515 (36%), Positives = 297/515 (57%), Gaps = 2/515 (0%)

Query: 134 GEFDMGFGFFKRSLELGF-YQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVT 192
           G        F   LE G  + L  +++  ++ AC   +     K ++  V   G+E +  
Sbjct: 101 GRHREALELF-EILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQY 159

Query: 193 VGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGL 252
           + N ++  + KCG     R++F EM  RN+ +W  +I GLV    Y E   LF +M    
Sbjct: 160 MMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDG 219

Query: 253 INPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAW 312
            +    T++  + A +GL +   G+Q+H  + K  +  D  +  AL+DMYSKCG +EDA 
Sbjct: 220 SDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDAR 279

Query: 313 QIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDT 372
            +F+   E   V+   +L G+A +G+ EEA+ L+ +M  +G+ ID    S ++ +F    
Sbjct: 280 CVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLA 339

Query: 373 SLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIA 432
            L   KQ H+ +I++ F  +   N  L+++YSK G +ED+  VF RM  +N +SWN++IA
Sbjct: 340 LLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIA 399

Query: 433 AFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRIS 492
            +  HG G KA+E++E M  EGV P  VTFL++L AC + GL  +G E  +SM+E HRI 
Sbjct: 400 GYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIK 459

Query: 493 PRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEK 552
           PRA HYAC+++++GR GLL EA + I R P KP V +W ALL AC IH + E+G+ AAEK
Sbjct: 460 PRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEK 519

Query: 553 LFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVV 612
           L+   P+    Y+++ N+Y+ SGR  E AK ++ +K  G+      +WIE++KQ HSF  
Sbjct: 520 LYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFS 579

Query: 613 DDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFIL 647
            D++HPQ+  I+  L EL++ + + GYV  +  +L
Sbjct: 580 GDRLHPQSREIYQKLDELMKEISEYGYVAEENELL 614

Length = 697

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  248 bits (636), Expect = 4e-72
 Identities = 141/474 (29%), Positives = 234/474 (49%), Gaps = 19/474 (4%)

Query: 82  VYNVPNATVIW------NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGE 135
           V +   ++         N++LS +++  ++ +A  +F  MP RD  SWN +V G+ + G 
Sbjct: 108 VCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGY 167

Query: 136 FDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGN 195
           FD     + R L  G  + D  +F  +L  C         + +H  V   G+E +V V N
Sbjct: 168 FDEALCLYHRMLWAGV-RPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVN 226

Query: 196 ALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINP 255
           ALIT Y KCG   S R VF  M  R+ I+W A+ISG  +N    EGL+LF  M    ++P
Sbjct: 227 ALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDP 286

Query: 256 NSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIF 315
           + +T  S + AC  L     GR++HG + K     D+ + ++L+ MY   GS  +A ++F
Sbjct: 287 DLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVF 346

Query: 316 EFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLG 375
              E  D VS T ++ G+ +NG  ++A++ +  M +  +  D   +++VL        L 
Sbjct: 347 SRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLD 406

Query: 376 LGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFA 435
           +G ++H L  +    S   V N LI MYSKC  ++ +++VF  +  ++ +SW S+IA   
Sbjct: 407 VGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLR 466

Query: 436 RHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF----LKSMTEVHRI 491
            +   F+AL  + +M L  ++P  VT ++ L AC+ +G +  G E     L++       
Sbjct: 467 LNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGF 525

Query: 492 SPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEM 545
            P A     ++D+  R G +  A +  +    + DV+ W  LL     HG   M
Sbjct: 526 LPNA-----LLDLYVRCGRMNYAWN--QFNSHEKDVVSWNILLTGYVAHGKGSM 572

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  146 bits (371), Expect = 5e-37
 Identities = 110/434 (25%), Positives = 196/434 (45%), Gaps = 31/434 (7%)

Query: 92  WNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGF 151
            N +L  ++KC  + +A +LFD+MP R+  SW T++ G +  G +   F  F+   E G 
Sbjct: 161 MNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDG- 219

Query: 152 YQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGR 211
              +  +F ++L A      +   + +HC V   G   +  V  ALI  Y KCG     R
Sbjct: 220 SDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDAR 279

Query: 212 KVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQ 271
            VF  M  +  + W ++++G   +   EE L L+ +M    ++ +  T+   +   S L 
Sbjct: 280 CVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLA 339

Query: 272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV 331
            L   +Q H  L +     D+   +AL+D+YSK G +EDA  +F+     + +S   ++ 
Sbjct: 340 LLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIA 399

Query: 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           G+  +G   +A+++F +M+  G+   PN V+  AVL           G +I   + ++  
Sbjct: 400 GYGNHGRGTKAVEMFERMIAEGVA--PNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHR 457

Query: 390 TSNPFVNNG-LINMYSKCGDLEDSIKVFSRMAPRNSVS--WNSMIAAFARHGNGFKALEL 446
                ++   +I +  + G L+++     R AP       W +++ A   H N  +   L
Sbjct: 458 IKPRAMHYACMIELLGREGLLDEAYA-MIRRAPFKPTVNMWAALLTACRIHKN-LELGRL 515

Query: 447 YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506
             E KL G+ P  +         ++V L+N           ++  S R    A VV+ + 
Sbjct: 516 AAE-KLYGMGPEKLN--------NYVVLLN-----------LYNSSGRQAEAAKVVETLK 555

Query: 507 RAGL-LIEARSFIE 519
           R GL +  A ++IE
Sbjct: 556 RKGLSMHPACTWIE 569

Length = 697

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  137 bits (346), Expect = 1e-33
 Identities = 89/342 (26%), Positives = 155/342 (45%), Gaps = 16/342 (4%)

Query: 226 TAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWK 285
            + +  L  +   E+ LKL   M    +  +   Y++    C   +A+ EG ++      
Sbjct: 55  NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114

Query: 286 LALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQL 345
                 + + +A++ M+ + G +  AW +F    E D  S  V++ G+A+ G+ +EA+ L
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCL 174

Query: 346 FVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSK 405
           + +M+ AG+  D      VL   G    L  G+++H+ +++  F  +  V N LI MY K
Sbjct: 175 YHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVK 234

Query: 406 CGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSL 465
           CGD+  +  VF RM  R+ +SWN+MI+ +  +G   + LEL+  M+   V+P  +T  S+
Sbjct: 235 CGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSV 294

Query: 466 LHACSHVGLVNKGMEFLKSMTEVHRISPRAEH------YACVVDMVGRAGLLIEARSFIE 519
           + AC  +G    G        E+H    +            ++ M    G   EA     
Sbjct: 295 ISACELLGDERLG-------REMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFS 347

Query: 520 RMPVKPDVLVWQALLGACSIHG--DSEMGKYAAEKLFLAQPD 559
           RM  K D + W A++     +G  D  +  YA  +     PD
Sbjct: 348 RMETK-DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPD 388

Length = 857

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 76.4 bits (188), Expect = 2e-14
 Identities = 70/313 (22%), Positives = 123/313 (39%), Gaps = 55/313 (17%)

Query: 330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF 389
           L     +G  E+A++L   M +  + +D +   A+  +     ++  G ++ S  + S  
Sbjct: 58  LRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHP 117

Query: 390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
           +    + N +++M+ + G+L  +  VF +M  R+  SWN ++  +A+ G   +AL LY  
Sbjct: 118 SLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHR 177

Query: 450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVD----MV 505
           M   GV P   TF  +L  C  +  + +G E        H +    E    VV+    M 
Sbjct: 178 MLWAGVRPDVYTFPCVLRTCGGIPDLARGRE-----VHAHVVRFGFELDVDVVNALITMY 232

Query: 506 GRAGLLIEARSFIERMP----------------------------------VKPDVLVWQ 531
            + G ++ AR   +RMP                                  V PD++   
Sbjct: 233 VKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTIT 292

Query: 532 ALLGACSIHGDSEMGK----YAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRM 587
           +++ AC + GD  +G+    Y  +  F          I M   Y   G W E  K   RM
Sbjct: 293 SVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQM---YLSLGSWGEAEKVFSRM 349

Query: 588 KEMGVDKETGISW 600
                + +  +SW
Sbjct: 350 -----ETKDAVSW 357

Length = 857

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 62.0 bits (152), Expect = 2e-12
 Identities = 14/49 (28%), Positives = 28/49 (57%)

Query: 423 NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSH 471
           + V++N++I  + + G   +AL+L+ EMK  G++P   T+  L+     
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 56.4 bits (136), Expect = 3e-08
 Identities = 54/274 (19%), Positives = 117/274 (42%), Gaps = 20/274 (7%)

Query: 285 KLALQSDLCIESALMDMYSKCGSVED---AWQIFEFAEE----LDGVSMTVILVGFAQNG 337
           KL     L   + LM   S C S +D   A ++    +E     D    T ++   A++G
Sbjct: 430 KLIRNPTLSTFNMLM---SVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSG 486

Query: 338 FEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN 397
             +   ++F +MV AG+E + +   A++        +      + ++   +   +  V N
Sbjct: 487 KVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFN 546

Query: 398 GLINMYSKCGDLEDSIKVFSRMAPR------NSVSWNSMIAAFARHGNGFKALELYEEMK 451
            LI+   + G ++ +  V + M         + ++  +++ A A  G   +A E+Y+ + 
Sbjct: 547 ALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606

Query: 452 LEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLL 511
              ++ T   +   +++CS  G  +  +     M +   + P    ++ +VD+ G AG L
Sbjct: 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG-VKPDEVFFSALVDVAGHAGDL 665

Query: 512 IEARSFIERMP---VKPDVLVWQALLGACSIHGD 542
            +A   ++      +K   + + +L+GACS   +
Sbjct: 666 DKAFEILQDARKQGIKLGTVSYSSLMGACSNAKN 699

Length = 1060

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 55.6 bits (134), Expect = 6e-08
 Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 12/136 (8%)

Query: 37  SKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLL 96
           S + +D +   S ++ I ++          HA  I+T  P D           V   +L+
Sbjct: 319 SGVSIDQFT-FSIMIRIFSRLALLEHAKQAHAGLIRTGFPLD----------IVANTALV 367

Query: 97  SFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQ 156
             Y K  +M +A  +FD MP ++ +SWN +++G+  +G        F+R +  G    + 
Sbjct: 368 DLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP-NH 426

Query: 157 ASFTIILSACDRSELS 172
            +F  +LSAC  S LS
Sbjct: 427 VTFLAVLSACRYSGLS 442

Length = 697

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 45.5 bits (109), Expect = 1e-06
 Identities = 13/49 (26%), Positives = 28/49 (57%), Gaps = 5/49 (10%)

Query: 86  PNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMR----DTVSWNTMVSGF 130
           P+  V +N+L+  Y K  ++  A+KLF++M  R    +  +++ ++ G 
Sbjct: 1   PD-VVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 44.8 bits (107), Expect = 1e-06
 Identities = 14/31 (45%), Positives = 24/31 (77%)

Query: 425 VSWNSMIAAFARHGNGFKALELYEEMKLEGV 455
           V++NS+I+ + + G   +ALEL++EMK +GV
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 43.9 bits (105), Expect = 3e-06
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 6/54 (11%)

Query: 221 NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALC 274
           +V+T+  +I G  +    EE LKLF +M    I PN  TY  S++    +  LC
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTY--SIL----IDGLC 49

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 43.2 bits (103), Expect = 5e-06
 Identities = 14/35 (40%), Positives = 23/35 (65%)

Query: 425 VSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD 459
           V++N++I    + G   +ALEL++EMK  G+EP  
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 48.2 bits (115), Expect = 1e-05
 Identities = 48/212 (22%), Positives = 81/212 (38%), Gaps = 48/212 (22%)

Query: 382 SLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRM---APRNSVSWNSMIAAFARHG 438
           +L I+ DF         L  +  + G+ +D+I+ F ++    P+N  +  ++   + R G
Sbjct: 491 ALSIEPDFFPAAA---NLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTG 547

Query: 439 NGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVN--KGMEFLKSMTEVHRISPRAE 496
           N  +A+   E  K   + P ++   +L  A  ++G     K +  L    +    SP A 
Sbjct: 548 NEEEAVAWLE--KAAELNPQEIE-PALALAQYYLGKGQLKKALAILNEAADAAPDSPEA- 603

Query: 497 HYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLA 556
                  M+GRA L                              GD      + +KL   
Sbjct: 604 -----WLMLGRAQLA----------------------------AGDLNKAVSSFKKLLAL 630

Query: 557 QPDSPAPYILMANIYSCSGRWKERAKAIKRMK 588
           QPDS    +L+A+ Y+     K  AKAI  +K
Sbjct: 631 QPDSALALLLLADAYA---VMKNYAKAITSLK 659

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 41.2 bits (98), Expect = 3e-05
 Identities = 9/48 (18%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 119 DTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC 166
           D V++NT++ G+ + G+ +     F    + G  + +  +++I++   
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGI-KPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 46.8 bits (111), Expect = 3e-05
 Identities = 78/422 (18%), Positives = 164/422 (38%), Gaps = 81/422 (19%)

Query: 158 SFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEM 217
           +F +++S C  S+    +  +  LV   G + +  +   LI++  K G   +  +VF EM
Sbjct: 439 TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEM 498

Query: 218 RVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGR 277
                     V +G                     +  N  T+ + +  C+    + +  
Sbjct: 499 ----------VNAG---------------------VEANVHTFGALIDGCARAGQVAKAF 527

Query: 278 QIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIF-EFAEEL-----DGVSMTVILV 331
             +GI+    ++ D  + +AL+    + G+V+ A+ +  E   E      D +++  ++ 
Sbjct: 528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMK 587

Query: 332 GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTS 391
             A  G  + A +++  + +  I+  P + +  +              I+  + K     
Sbjct: 588 ACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP 647

Query: 392 NPFVNNGLINMYSKCGDLEDSIKVFSRM----APRNSVSWNSMIAAFARHGNGFKALELY 447
           +    + L+++    GDL+ + ++            +VS++S++ A +   N  KALELY
Sbjct: 648 DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELY 707

Query: 448 EEMKLEGVEPTDVTFLSLLHA-CSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG 506
           E++K   + PT  T  +L+ A C       +G +  K++               V+  + 
Sbjct: 708 EDIKSIKLRPTVSTMNALITALC-------EGNQLPKALE--------------VLSEMK 746

Query: 507 RAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFL-AQPDSPAPYI 565
           R GL              P+ + +  LL A     D+++G      L   A+ D   P +
Sbjct: 747 RLGL-------------CPNTITYSILLVASERKDDADVG----LDLLSQAKEDGIKPNL 789

Query: 566 LM 567
           +M
Sbjct: 790 VM 791

Length = 1060

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 39.5 bits (93), Expect = 1e-04
 Identities = 12/33 (36%), Positives = 22/33 (66%)

Query: 425 VSWNSMIAAFARHGNGFKALELYEEMKLEGVEP 457
            ++N+++ A A+ G+   AL + EEMK  G++P
Sbjct: 2   ETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 43.7 bits (101), Expect = 2e-04
 Identities = 38/212 (17%), Positives = 75/212 (35%), Gaps = 15/212 (7%)

Query: 391 SNPFVNNGLINMYSKCGDLEDSIKVFSR-----MAPRNSVSWNSMIAAFARHGNGFKALE 445
               +   L     K G LE+++++  +     + P  + +  ++       G   +ALE
Sbjct: 57  DLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116

Query: 446 LYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVV--- 502
           L E+      +P     L  L A   +G   + +E  +   +   + P     A  +   
Sbjct: 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYE---KALELDPELNELAEALLAL 173

Query: 503 -DMVGRAGLLIEARSFIER---MPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQP 558
             ++   G   EA   +E+   +    D      L       G  E      EK     P
Sbjct: 174 GALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDP 233

Query: 559 DSPAPYILMANIYSCSGRWKERAKAIKRMKEM 590
           D+      +A +    GR++E  +A+++  E+
Sbjct: 234 DNAEALYNLALLLLELGRYEEALEALEKALEL 265

Length = 291

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 19/73 (26%), Positives = 39/73 (53%), Gaps = 5/73 (6%)

Query: 397 NGLINMYSKCGDLEDSIKVFSR---MAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE 453
             L N+Y K GD +++++ + +   + P N+ ++ ++ AA+ + G   +ALE YE  K  
Sbjct: 4   LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYE--KAL 61

Query: 454 GVEPTDVTFLSLL 466
            ++P +      L
Sbjct: 62  ELDPDNAKAYYNL 74

Length = 100

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 36.6 bits (86), Expect = 0.002
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 4/42 (9%)

Query: 195 NALITSYFKCGSSSSGRKVFGEMRVR----NVITWTAVISGL 232
           N LI  Y K G      K+F EM+ R    NV T++ +I GL
Sbjct: 7   NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 41.0 bits (96), Expect = 0.002
 Identities = 42/181 (23%), Positives = 71/181 (39%), Gaps = 25/181 (13%)

Query: 427 WNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMT 486
           + ++I+  A+ G      E++ EM   GVE    TF +L+  C+  G V K       M 
Sbjct: 475 YTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMR 534

Query: 487 EVHRISPRAEHYACVVDMVGRAGLLIEARSF-------IERMPVKPDVLVWQALLGACSI 539
               + P    +  ++   G++G +   R+F        E  P+ PD +   AL+ AC+ 
Sbjct: 535 S-KNVKPDRVVFNALISACGQSGAV--DRAFDVLAEMKAETHPIDPDHITVGALMKACAN 591

Query: 540 HGDSE--------MGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMG 591
            G  +        + +Y  +        +P  Y +  N  S  G W         MK+ G
Sbjct: 592 AGQVDRAKEVYQMIHEYNIK-------GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG 644

Query: 592 V 592
           V
Sbjct: 645 V 645

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 35.5 bits (83), Expect = 0.003
 Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 2/39 (5%)

Query: 324 VSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS 362
           V+   ++ G+ + G  EEA++LF +M K GI+  PN+ +
Sbjct: 4   VTYNTLIDGYCKKGKVEEALKLFNEMKKRGIK--PNVYT 40

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	648
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.96
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.96
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.93
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.91
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.91
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.9
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.88
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.86
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.84
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.84
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.83
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.83
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.82
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.82
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.82
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.81
PRK14574	822	hmsH outer membrane protein; Provisional	99.8
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.79
PRK14574	822	hmsH outer membrane protein; Provisional	99.78
KOG2076	895	consensus RNA polymerase III transcription factor	99.77
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.76
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.76
KOG2003	840	consensus TPR repeat-containing protein [General f	99.74
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.72
KOG2076	895	consensus RNA polymerase III transcription factor	99.71
KOG2003	840	consensus TPR repeat-containing protein [General f	99.66
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.64
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.62
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.59
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.55
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.54
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.54
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.53
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.53
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.53
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.51
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.5
KOG1126	638	consensus DNA-binding cell division cycle control	99.5
KOG1126	638	consensus DNA-binding cell division cycle control	99.49
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.49
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.47
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.45
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.44
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.44
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.43
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.4
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.39
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.39
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.35
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.35
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.32
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.31
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.29
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.28
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.28
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.28
PRK12370	553	invasion protein regulator; Provisional	99.27
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.23
PF13041	50	PPR_2: PPR repeat family	99.22
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.2
KOG1129	478	consensus TPR repeat-containing protein [General f	99.19
PF13041	50	PPR_2: PPR repeat family	99.19
PRK12370	553	invasion protein regulator; Provisional	99.16
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.15
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.14
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.13
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.13
KOG1129	478	consensus TPR repeat-containing protein [General f	99.12
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.11
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.08
KOG3616	1636	consensus Selective LIM binding factor [Transcript	99.08
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.07
PRK11189	296	lipoprotein NlpI; Provisional	99.06
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	99.06
PRK11189	296	lipoprotein NlpI; Provisional	99.05
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.03
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.97
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.97
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.97
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.96
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.95
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.93
KOG1125	579	consensus TPR repeat-containing protein [General f	98.92
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.88
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.87
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.86
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.86
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.82
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.82
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.81
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.75
PRK04841	903	transcriptional regulator MalT; Provisional	98.71
PRK04841	903	transcriptional regulator MalT; Provisional	98.71
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.71
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.7
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.68
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.67
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.66
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.65
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.64
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.63
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.62
PF12854	34	PPR_1: PPR repeat	98.6
PRK15359	144	type III secretion system chaperone protein SscB;	98.55
PRK15359	144	type III secretion system chaperone protein SscB;	98.53
PF12854	34	PPR_1: PPR repeat	98.5
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.5
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.5
KOG1125	579	consensus TPR repeat-containing protein [General f	98.5
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.49
PLN02789	320	farnesyltranstransferase	98.48
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.48
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.48
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.44
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.4
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.37
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.36
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.36
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.34
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.32
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.31
PLN02789	320	farnesyltranstransferase	98.29
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.28
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.26
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.25
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.25
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.22
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.2
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.18
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.13
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.1
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.1
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.06
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.06
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.01
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.99
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	97.99
PF13812	34	PPR_3: Pentatricopeptide repeat domain	97.97
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.97
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.96
PF13812	34	PPR_3: Pentatricopeptide repeat domain	97.96
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.93
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.91
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.9
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.82
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.82
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.81
KOG0553	304	consensus TPR repeat-containing protein [General f	97.79
KOG0553	304	consensus TPR repeat-containing protein [General f	97.78
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.74
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.71
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.68
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.64
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.62
PF13371	73	TPR_9: Tetratricopeptide repeat	97.61
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.61
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.61
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.6
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.57
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.56
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.56
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.54
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.53
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.53
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.5
PRK15331	165	chaperone protein SicA; Provisional	97.46
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.43
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.43
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.37
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.36
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.36
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.35
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.33
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.32
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.3
PF12688	120	TPR_5: Tetratrico peptide repeat	97.29
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.26
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.26
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.24
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.22
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.2
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.19
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.19
PRK10803	263	tol-pal system protein YbgF; Provisional	97.18
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.18
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.18
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.16
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.15
PF13431	34	TPR_17: Tetratricopeptide repeat	97.06
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	97.04
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.02
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.02
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.01
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.01
PF12688	120	TPR_5: Tetratrico peptide repeat	96.98
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	96.91
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	96.88
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.84
PRK10803	263	tol-pal system protein YbgF; Provisional	96.81
PF13428	44	TPR_14: Tetratricopeptide repeat	96.77
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.76
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.75
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	96.73
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	96.73
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	96.72
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.68
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	96.67
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.6
PF13371	73	TPR_9: Tetratricopeptide repeat	96.57
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.45
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.42
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.42
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	96.35
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	96.28
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	96.28
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.26
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.23
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.17
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.09
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	95.94
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	95.89
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	95.86
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	95.83
COG0457	291	NrfG FOG: TPR repeat [General function prediction	95.8
COG3118	304	Thioredoxin domain-containing protein [Posttransla	95.72
PRK11906	458	transcriptional regulator; Provisional	95.53
KOG4555	175	consensus TPR repeat-containing protein [Function	95.45
PRK11906	458	transcriptional regulator; Provisional	95.43
PF13512	142	TPR_18: Tetratricopeptide repeat	95.36
PF13512	142	TPR_18: Tetratricopeptide repeat	95.32
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	95.32
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.26
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	94.95
COG0457	291	NrfG FOG: TPR repeat [General function prediction	94.89
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	94.86
COG3898	531	Uncharacterized membrane-bound protein [Function u	94.79
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	94.72
KOG4555	175	consensus TPR repeat-containing protein [Function	94.7
PRK11619	644	lytic murein transglycosylase; Provisional	94.66
KOG4234	271	consensus TPR repeat-containing protein [General f	94.64
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	94.6
COG3118	304	Thioredoxin domain-containing protein [Posttransla	94.59
KOG2610	491	consensus Uncharacterized conserved protein [Funct	94.58
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	94.54
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	94.5
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	94.47
smart00299	140	CLH Clathrin heavy chain repeat homology.	94.45
KOG3941	406	consensus Intermediate in Toll signal transduction	94.44
PRK15331	165	chaperone protein SicA; Provisional	94.36
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	94.34
smart00299	140	CLH Clathrin heavy chain repeat homology.	94.23
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	93.79
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	93.76
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	93.67
KOG1258	577	consensus mRNA processing protein [RNA processing	93.65
COG4105	254	ComL DNA uptake lipoprotein [General function pred	93.45
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	93.41
COG3629	280	DnrI DNA-binding transcriptional activator of the	93.39
KOG3941	406	consensus Intermediate in Toll signal transduction	93.35
KOG1941	518	consensus Acetylcholine receptor-associated protei	93.22
KOG1585	308	consensus Protein required for fusion of vesicles	93.06
COG4105	254	ComL DNA uptake lipoprotein [General function pred	93.01
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	92.97
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	92.94
PF13428	44	TPR_14: Tetratricopeptide repeat	92.75
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	92.55
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	92.54
KOG1941	518	consensus Acetylcholine receptor-associated protei	92.39
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	92.33
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	92.28
KOG4648	536	consensus Uncharacterized conserved protein, conta	92.23
KOG1586	288	consensus Protein required for fusion of vesicles	92.12
KOG1258	577	consensus mRNA processing protein [RNA processing	92.09
KOG2610	491	consensus Uncharacterized conserved protein [Funct	91.91
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	91.88
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	91.83
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	91.8
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	91.76
KOG1585	308	consensus Protein required for fusion of vesicles	91.66
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	91.61
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	91.6
PF13762	145	MNE1: Mitochondrial splicing apparatus component	91.31
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	91.3
KOG4234	271	consensus TPR repeat-containing protein [General f	91.09
PRK09687	280	putative lyase; Provisional	90.69
PRK09687	280	putative lyase; Provisional	90.38
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	90.31
KOG3364	149	consensus Membrane protein involved in organellar	90.02
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	89.97
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	89.91
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	89.73
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	89.51
COG1747	711	Uncharacterized N-terminal domain of the transcrip	89.41
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	89.2
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	89.03
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	88.9
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	88.78
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	88.73
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	88.6
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	88.58
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	88.33
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	88.15
COG3629	280	DnrI DNA-binding transcriptional activator of the	88.05
PF13929	292	mRNA_stabil: mRNA stabilisation	88.01
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	87.81
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	87.77
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	87.53
PF14432	116	DYW_deaminase: DYW family of nucleic acid deaminas	87.32
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	86.88
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	86.82
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	86.7
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	86.51
PRK10941	269	hypothetical protein; Provisional	86.44
PRK11619	644	lytic murein transglycosylase; Provisional	86.39
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	86.36
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	86.28
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	86.23
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	85.69
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	85.51
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	85.23
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	85.0
KOG4570	418	consensus Uncharacterized conserved protein [Funct	84.94
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	84.45
KOG4648	536	consensus Uncharacterized conserved protein, conta	84.32
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	83.44
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	83.21
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	83.07
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	82.75
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	82.04
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	81.93
COG4455	273	ImpE Protein of avirulence locus involved in tempe	81.77
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	81.63
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	81.57
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	81.56
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	81.5
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	81.11
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	81.08
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	80.95
TIGR02508	115	type_III_yscG type III secretion protein, YscG fam	80.59
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	80.46
COG4455	273	ImpE Protein of avirulence locus involved in tempe	80.34

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=8.2e-94  Score=796.34  Aligned_cols=631  Identities=33%  Similarity=0.580  Sum_probs=619.2

Q ss_pred             chhhhccc-cCCcchhHhhHhHHhhccccCCC------ccCCCCcCCCcchHHHHHHHHhccCCCcchhHHHHHHhhhcC
Q 037816            3 SKWVFLKL-NSNFPFCSSLVSPFITKIIQDPT------SSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFE   75 (648)
Q Consensus         3 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~------~~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~   75 (648)
                      ++++|+.+ ++|+.+||+|+++|++.|..+++      |...|++| |..+|+.++++|+..+++..+.+++..+.+.  
T Consensus       140 A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~P-d~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~--  216 (857)
T PLN03077        140 AWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRP-DVYTFPCVLRTCGGIPDLARGREVHAHVVRF--  216 (857)
T ss_pred             HHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHhCCccchhhHHHHHHHHHHc--
Confidence            67889999 78999999999999999888777      57789999 9999999999999999999999999999999  


Q ss_pred             CCCCcCcCCCCChHHHHHHHHHHHhcCCChhHHHHhhccCCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCc
Q 037816           76 PFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLD  155 (648)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~  155 (648)
                      |+        .||..+||.||.+|++.|++++|.++|++|+.||..+||++|.+|++.|++++|+++|++|.+.|+.|+.
T Consensus       217 g~--------~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~  288 (857)
T PLN03077        217 GF--------ELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDL  288 (857)
T ss_pred             CC--------CcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh
Confidence            99        9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccCCCCcccHHHHHHHHHHC
Q 037816          156 QASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQN  235 (648)
Q Consensus       156 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~  235 (648)
                      . ||+.++.+|++.|+.+.+.+++..+.+.|+.||..+|++|+.+|++.|++++|.++|++|..||..+||.+|.+|++.
T Consensus       289 ~-ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~  367 (857)
T PLN03077        289 M-TITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKN  367 (857)
T ss_pred             h-HHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhC
Confidence            9 999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 037816          236 QLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIF  315 (648)
Q Consensus       236 g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  315 (648)
                      |++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+++.|+++|++.|++++|.++|
T Consensus       368 g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf  447 (857)
T PLN03077        368 GLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVF  447 (857)
T ss_pred             CCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhccCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhH
Q 037816          316 EFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFV  395 (648)
Q Consensus       316 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  395 (648)
                      ++|.++|..+|+.+|.+|++.|+.++|+.+|++|.. +++||..||+.++.+|++.|.++.+.+++..+.+.|+.++..+
T Consensus       448 ~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~  526 (857)
T PLN03077        448 HNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFL  526 (857)
T ss_pred             HhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCcccee
Confidence            999999999999999999999999999999999986 5999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcH
Q 037816          396 NNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLV  475 (648)
Q Consensus       396 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~  475 (648)
                      +++|+++|++.|++++|.++|+.+ .+|..+||++|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+
T Consensus       527 ~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v  605 (857)
T PLN03077        527 PNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMV  605 (857)
T ss_pred             chHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChH
Confidence            999999999999999999999999 8999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 037816          476 NKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFL  555 (648)
Q Consensus       476 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  555 (648)
                      ++|.++|+.|.+.+++.|+..+|+.++++|++.|++++|.+++++|+++||..+|++|+.+|..+|+.+.++...+++++
T Consensus       606 ~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~  685 (857)
T PLN03077        606 TQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFE  685 (857)
T ss_pred             HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence            99999999999667999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCceeEEEEcCEEEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 037816          556 AQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMI  635 (648)
Q Consensus       556 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~  635 (648)
                      +.|++...|..++++|...|+|++|.++.+.|++.|+++++|+||+++...++.|..++..||...+||.++.++..+|+
T Consensus       686 l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~  765 (857)
T PLN03077        686 LDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMK  765 (857)
T ss_pred             hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCcccCCCCCC
Q 037816          636 DEGYVPNKRFIL  647 (648)
Q Consensus       636 ~~g~~p~~~~~~  647 (648)
                      +.||+||+.+++
T Consensus       766 ~~g~~~~~~~~~  777 (857)
T PLN03077        766 ASGLAGSESSSM  777 (857)
T ss_pred             hCCcCCCcchhc
Confidence            999999988765

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=1e-78  Score=659.66  Aligned_cols=531  Identities=36%  Similarity=0.616  Sum_probs=521.2

Q ss_pred             CCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcC-CCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHH
Q 037816          117 MRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG-FYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGN  195 (648)
Q Consensus       117 ~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  195 (648)
                      .++..+|+.+|.+|.+.|++++|+++|+.|...+ ..|+.. +|+.++.+|.+.++.+.+.+++..|.+.|+.||..+|+
T Consensus        84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~-t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n  162 (697)
T PLN03081         84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPAS-TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN  162 (697)
T ss_pred             CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence            4577799999999999999999999999999865 678888 99999999999999999999999999999999999999


Q ss_pred             HHHHHhHhcCChhHHHHHhcccCCCCcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHH
Q 037816          196 ALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCE  275 (648)
Q Consensus       196 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~  275 (648)
                      .|+.+|++.|+++.|.++|++|.+||..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.
T Consensus       163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~  242 (697)
T PLN03081        163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA  242 (697)
T ss_pred             HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 037816          276 GRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIE  355 (648)
Q Consensus       276 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~  355 (648)
                      +.+++..+.+.|+.+|..++++|+++|++.|++++|.++|+.|..+|+++||.+|.+|++.|++++|+++|++|.+.|+.
T Consensus       243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~  322 (697)
T PLN03081        243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS  322 (697)
T ss_pred             HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHH
Q 037816          356 IDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFA  435 (648)
Q Consensus       356 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~  435 (648)
                      ||..||+.++.+|++.|+++.|.+++..|.+.|++|+..+|++|+++|++.|++++|.++|++|.++|..+||+||.+|+
T Consensus       323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~  402 (697)
T PLN03081        323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYG  402 (697)
T ss_pred             CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHH
Q 037816          436 RHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEAR  515 (648)
Q Consensus       436 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  515 (648)
                      +.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+.+++.|+..+|+.++++|++.|++++|.
T Consensus       403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~  482 (697)
T PLN03081        403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY  482 (697)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999987799999999999999999999999999


Q ss_pred             HHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 037816          516 SFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKE  595 (648)
Q Consensus       516 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~  595 (648)
                      +++++|++.|+..+|++|+.+|..+|+++.|..+++++.+..|++..+|..++++|++.|++++|.++++.|.+.|+.+.
T Consensus       483 ~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~  562 (697)
T PLN03081        483 AMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMH  562 (697)
T ss_pred             HHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeEEEEcCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCcccCCCCCCC
Q 037816          596 TGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH  648 (648)
Q Consensus       596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~g~~p~~~~~~~  648 (648)
                      +|++|+.+...++.|..++..||...+|+.++.++..+|.+.||+||+.+++|
T Consensus       563 ~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~  615 (697)
T PLN03081        563 PACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLP  615 (697)
T ss_pred             CCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhc
Confidence            99999999999999999999999999999999999999999999999998764

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=4.3e-78  Score=670.53  Aligned_cols=570  Identities=26%  Similarity=0.414  Sum_probs=534.5

Q ss_pred             cCCcchhHhhHhHHhhccccCCC------ccCCCCcCCCcchHHHHHHHHhccCCCcchhHHHHHHhhhcCCCCCcCcCC
Q 037816           11 NSNFPFCSSLVSPFITKIIQDPT------SSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYN   84 (648)
Q Consensus        11 ~~~~~~~~~l~~~~~~~~~~~~~------~~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   84 (648)
                      +++..++|.++++|++.|...++      |+..|+.| +..+|..++.+|.+.+.+..|.+++..+.+.  +.       
T Consensus        48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~-------  117 (857)
T PLN03077         48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPV-DEDAYVALFRLCEWKRAVEEGSRVCSRALSS--HP-------  117 (857)
T ss_pred             ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhCCCHHHHHHHHHHHHHc--CC-------
Confidence            56788999999999999988877      58889999 9999999999999999999999999999999  88       


Q ss_pred             CCChHHHHHHHHHHHhcCCChhHHHHhhccCCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHH
Q 037816           85 VPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILS  164 (648)
Q Consensus        85 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~  164 (648)
                       .++..++|.|+..|++.|+++.|.++|++|++||..+||.+|.+|++.|++++|+++|++|...|+.|+.. ||+.+++
T Consensus       118 -~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~-t~~~ll~  195 (857)
T PLN03077        118 -SLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVY-TFPCVLR  195 (857)
T ss_pred             -CCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChh-HHHHHHH
Confidence             89999999999999999999999999999999999999999999999999999999999999999999999 9999999


Q ss_pred             HhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccCCCCcccHHHHHHHHHHCCCchHHHHH
Q 037816          165 ACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKL  244 (648)
Q Consensus       165 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  244 (648)
                      +|+..+++..+.+++..+.+.|+.||..+++.|+.+|++.|+++.|.++|++|+.+|..+||++|.+|++.|++++|+++
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~l  275 (857)
T PLN03077        196 TCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLEL  275 (857)
T ss_pred             HhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCcc
Q 037816          245 FVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGV  324 (648)
Q Consensus       245 ~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  324 (648)
                      |++|.+.|+.||..||+.++.+|++.|+++.+.+++..+.+.|+.||..+|++|+.+|++.|++++|.++|++|..+|..
T Consensus       276 f~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~  355 (857)
T PLN03077        276 FFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAV  355 (857)
T ss_pred             HHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 037816          325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYS  404 (648)
Q Consensus       325 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  404 (648)
                      +|+.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+|++|+.+|+
T Consensus       356 s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~  435 (857)
T PLN03077        356 SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYS  435 (857)
T ss_pred             eHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 037816          405 KCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKS  484 (648)
Q Consensus       405 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~  484 (648)
                      +.|++++|.++|++|.++|..+|+.++.+|++.|+.++|+.+|++|.. +++||..||+.++.+|++.|+++.+.+++..
T Consensus       436 k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~  514 (857)
T PLN03077        436 KCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAH  514 (857)
T ss_pred             HcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHH
Confidence            999999999999999999999999999999999999999999999986 5899999999999999999999999999999


Q ss_pred             hHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCCCcc
Q 037816          485 MTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQ-PDSPAP  563 (648)
Q Consensus       485 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~  563 (648)
                      +.+. |+.++..++++|+++|+++|++++|.++|+++  .||..+|++++.+|++.|+.++|+++|++|.+.+ .+|..+
T Consensus       515 ~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T  591 (857)
T PLN03077        515 VLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT  591 (857)
T ss_pred             HHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc
Confidence            9886 88888888888888888888888887777777  6777777777777777777777777777776543 445677


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHH-hCCCCCCC
Q 037816          564 YILMANIYSCSGRWKERAKAIKRMK-EMGVDKET  596 (648)
Q Consensus       564 ~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~~~~~  596 (648)
                      |..++.+|.+.|++++|.++|+.|. +.|+.|+.
T Consensus       592 ~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~  625 (857)
T PLN03077        592 FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL  625 (857)
T ss_pred             HHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch
Confidence            7777777777777777777777777 56666654

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=2.7e-65  Score=555.94  Aligned_cols=530  Identities=15%  Similarity=0.176  Sum_probs=382.1

Q ss_pred             CcchHHHHHHHHhccCCCcchhHHHHHHhhhcCCCCCcCcCCCCChHHHHHHHHHHHhcCCChhHHHHhhccCCCCCccc
Q 037816           43 NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVS  122 (648)
Q Consensus        43 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~  122 (648)
                      +...|..++..|++.|++++|.++|++|.+.  ++       ++++..+++.++..|.+.|.+++|..+|+.|..||..+
T Consensus       369 ~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~--gv-------v~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~T  439 (1060)
T PLN03218        369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKR--GL-------LDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLST  439 (1060)
T ss_pred             CchHHHHHHHHHHHCcCHHHHHHHHHHHHhC--CC-------CCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHH
Confidence            5566777777888888888888888888777  53       15677777778888888888888888888888888888


Q ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhH
Q 037816          123 WNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYF  202 (648)
Q Consensus       123 y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  202 (648)
                      |+.+|.+|++.|+++.|.++|++|.+.|+.|+.. +|+.++.+|++.|+.+.|..+++.|.+.|+.||..+|+.+|.+|+
T Consensus       440 yn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~-tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~  518 (1060)
T PLN03218        440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCK-LYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCA  518 (1060)
T ss_pred             HHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            8888888888888888888888888888777777 777777777777777777777777777777777777777777777


Q ss_pred             hcCChhHHHHHhcccC----CCCcccHHHHHHHHHHCCCchHHHHHHHHHHh--CCCCCChhhHHHHHHHhhccCChHHH
Q 037816          203 KCGSSSSGRKVFGEMR----VRNVITWTAVISGLVQNQLYEEGLKLFVKMHL--GLINPNSLTYLSSVMACSGLQALCEG  276 (648)
Q Consensus       203 ~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~p~~~t~~~ll~~~~~~~~~~~a  276 (648)
                      +.|++++|.++|++|.    .||..+|+.||.+|++.|++++|.++|++|..  .|+.||..+|++++.+|++.|++++|
T Consensus       519 k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA  598 (1060)
T PLN03218        519 RAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRA  598 (1060)
T ss_pred             HCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHH
Confidence            7777777777777774    46777777777777777777777777777754  46677777777777777777777777


Q ss_pred             HHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC----CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 037816          277 RQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE----LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKA  352 (648)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  352 (648)
                      .++|+.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+    ||..+|+.++.+|++.|+.++|.++|++|.+.
T Consensus       599 ~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~  678 (1060)
T PLN03218        599 KEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ  678 (1060)
T ss_pred             HHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence            77777777777777777777777777777777766666666653    46666666666666666666666666666666


Q ss_pred             CCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC----CCChhHHH
Q 037816          353 GIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA----PRNSVSWN  428 (648)
Q Consensus       353 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~  428 (648)
                      |+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.|+..+|+.||.+|++.|++++|.++|++|.    .||..+|+
T Consensus       679 G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~  758 (1060)
T PLN03218        679 GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYS  758 (1060)
T ss_pred             CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence            66666666666666666666666666666666666666666666666666666666666666666664    35666666


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhc
Q 037816          429 SMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA  508 (648)
Q Consensus       429 ~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  508 (648)
                      .++.+|++.|++++|.+++.+|.+.|+.||..+|+.++..|.  +.++++..+.+.+.. +.  +        .......
T Consensus       759 sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~-f~--~--------g~~~~~n  825 (1060)
T PLN03218        759 ILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVS-FD--S--------GRPQIEN  825 (1060)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhh-hh--c--------ccccccc
Confidence            666666666666666666666666666666666666665443  234444444333322 00  0        0111112


Q ss_pred             CCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH-hcCCCCCccHHHHHHHHHhcCChHHHHHHH
Q 037816          509 GLLIEARSFIERM---PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLF-LAQPDSPAPYILMANIYSCSGRWKERAKAI  584 (648)
Q Consensus       509 g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  584 (648)
                      +..++|..+|++|   ++.||..||+.++.+++..+..+.+..+++.+. ...+++..+|+.+++++.+.  .++|..++
T Consensus       826 ~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~  903 (1060)
T PLN03218        826 KWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLL  903 (1060)
T ss_pred             chHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHH
Confidence            3456799999999   899999999999988888899999888888764 34567788999999988332  36899999


Q ss_pred             HHHHhCCCCCCCc
Q 037816          585 KRMKEMGVDKETG  597 (648)
Q Consensus       585 ~~m~~~~~~~~~~  597 (648)
                      ++|.+.|+.|+..
T Consensus       904 ~em~~~Gi~p~~~  916 (1060)
T PLN03218        904 EEAASLGVVPSVS  916 (1060)
T ss_pred             HHHHHcCCCCCcc
Confidence            9999999999874

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=2.2e-65  Score=555.42  Aligned_cols=469  Identities=20%  Similarity=0.323  Sum_probs=450.2

Q ss_pred             cCCcchhHhhHhHHhhccccCCC------ccC-CCCcCCCcchHHHHHHHHhccCCCcchhHHHHHHhhhcCCCCCcCcC
Q 037816           11 NSNFPFCSSLVSPFITKIIQDPT------SST-SKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVY   83 (648)
Q Consensus        11 ~~~~~~~~~l~~~~~~~~~~~~~------~~~-~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   83 (648)
                      ..+..+|++++++|++.|++.++      |+. .+..| |..+|+.++.+|++.++++.|.+++..+.+.  |+      
T Consensus        84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~-~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~--g~------  154 (697)
T PLN03081         84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTL-PASTYDALVEACIALKSIRCVKAVYWHVESS--GF------  154 (697)
T ss_pred             CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CC------
Confidence            34566999999999999888777      344 35788 9999999999999999999999999999999  99      


Q ss_pred             CCCChHHHHHHHHHHHhcCCChhHHHHhhccCCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHH
Q 037816           84 NVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIIL  163 (648)
Q Consensus        84 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll  163 (648)
                        .||..+||.|+.+|++.|+++.|.++|++|++||..+||.+|.+|++.|++++|+++|++|.+.|+.|+.. +|..++
T Consensus       155 --~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~-t~~~ll  231 (697)
T PLN03081        155 --EPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPR-TFVVML  231 (697)
T ss_pred             --CcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChh-hHHHHH
Confidence              99999999999999999999999999999999999999999999999999999999999999999999999 999999


Q ss_pred             HHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccCCCCcccHHHHHHHHHHCCCchHHHH
Q 037816          164 SACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLK  243 (648)
Q Consensus       164 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  243 (648)
                      .+|...+..+.+.+++..+.+.|+.||..+|+.|+++|++.|++++|.++|++|..+|+.+||.||.+|++.|++++|++
T Consensus       232 ~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~  311 (697)
T PLN03081        232 RASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALC  311 (697)
T ss_pred             HHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCc
Q 037816          244 LFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDG  323 (648)
Q Consensus       244 ~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  323 (648)
                      +|++|.+.|+.||..||++++.+|++.|+++.|.+++..|.+.|+.||..++++|+++|+++|++++|.++|++|.++|.
T Consensus       312 lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~  391 (697)
T PLN03081        312 LYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNL  391 (697)
T ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHH-hCCCCchhHHHHHHHH
Q 037816          324 VSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK-SDFTSNPFVNNGLINM  402 (648)
Q Consensus       324 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~  402 (648)
                      .+||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++
T Consensus       392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~  471 (697)
T PLN03081        392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL  471 (697)
T ss_pred             eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999985 6999999999999999


Q ss_pred             HHhCCCHHHHHHHHhhcC-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHH
Q 037816          403 YSKCGDLEDSIKVFSRMA-PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP-TDVTFLSLLHACSHVGLVNKGME  480 (648)
Q Consensus       403 ~~~~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~  480 (648)
                      |++.|++++|.++++++. .|+..+|++|+.+|...|+++.|..+++++.+  +.| +..+|..+++.|++.|++++|.+
T Consensus       472 l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~  549 (697)
T PLN03081        472 LGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAK  549 (697)
T ss_pred             HHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHH
Confidence            999999999999999996 68999999999999999999999999999976  446 46799999999999999999999


Q ss_pred             HHHHhHHhcCCCCC
Q 037816          481 FLKSMTEVHRISPR  494 (648)
Q Consensus       481 ~~~~~~~~~~~~~~  494 (648)
                      +++.|.+. |+...
T Consensus       550 v~~~m~~~-g~~k~  562 (697)
T PLN03081        550 VVETLKRK-GLSMH  562 (697)
T ss_pred             HHHHHHHc-CCccC
Confidence            99999986 87643

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=1.7e-62  Score=534.01  Aligned_cols=532  Identities=17%  Similarity=0.194  Sum_probs=472.7

Q ss_pred             CCCChHHHHHHHHHHHhcCCChhHHHHhhccCCCCC-----cccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhH
Q 037816           84 NVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRD-----TVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQAS  158 (648)
Q Consensus        84 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~  158 (648)
                      ...++...|..++..|++.|++++|+++|++|..++     ..+++.++.+|.+.|..++|+.+|+.|..    |+.. +
T Consensus       365 ~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~-T  439 (1060)
T PLN03218        365 SGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLS-T  439 (1060)
T ss_pred             CCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHH-H
Confidence            345677889999999999999999999999998554     45667788889999999999999999974    8888 9


Q ss_pred             HHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccC----CCCcccHHHHHHHHHH
Q 037816          159 FTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR----VRNVITWTAVISGLVQ  234 (648)
Q Consensus       159 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~  234 (648)
                      |+.++.+|++.|+++.|..+++.|.+.|+.||..+|+.||.+|++.|++++|.++|++|.    .||..+|+.||.+|++
T Consensus       440 yn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k  519 (1060)
T PLN03218        440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR  519 (1060)
T ss_pred             HHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999997    5899999999999999


Q ss_pred             CCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHH--hcCCCchhHHHHHHHHHHhcCCHHHHH
Q 037816          235 NQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWK--LALQSDLCIESALMDMYSKCGSVEDAW  312 (648)
Q Consensus       235 ~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~  312 (648)
                      .|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.+++++|..  .|+.||..+|++++.+|++.|++++|.
T Consensus       520 ~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~  599 (1060)
T PLN03218        520 AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK  599 (1060)
T ss_pred             CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence            999999999999999999999999999999999999999999999999987  678999999999999999999999999


Q ss_pred             HHHHhccC----CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhC
Q 037816          313 QIFEFAEE----LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD  388 (648)
Q Consensus       313 ~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  388 (648)
                      ++|+.|.+    ++..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|
T Consensus       600 elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G  679 (1060)
T PLN03218        600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG  679 (1060)
T ss_pred             HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence            99999986    56789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 037816          389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA----PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLS  464 (648)
Q Consensus       389 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~  464 (648)
                      +.|+..+|++||.+|++.|++++|.++|++|.    .||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.
T Consensus       680 ~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~s  759 (1060)
T PLN03218        680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSI  759 (1060)
T ss_pred             CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence            99999999999999999999999999999995    68999999999999999999999999999999999999999999


Q ss_pred             HHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCh
Q 037816          465 LLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPDVLVWQALLGACSIHGDS  543 (648)
Q Consensus       465 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~  543 (648)
                      ++.+|++.|++++|.+++++|.+. |+.||..+|+.++..|.  +++++|.++.+.+ .+.+        .......+..
T Consensus       760 LL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~~--------g~~~~~n~w~  828 (1060)
T PLN03218        760 LLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFDS--------GRPQIENKWT  828 (1060)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhc--------cccccccchH
Confidence            999999999999999999999996 99999999999997654  2466666554433 1110        0111122334


Q ss_pred             HHHHHHHHHHHhcC-CCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCceeEEEEcCEEEEEEeCCCCCCChHH
Q 037816          544 EMGKYAAEKLFLAQ-PDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADT  622 (648)
Q Consensus       544 ~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  622 (648)
                      +.|..+|++|.+.+ .++..+|..++.++.+.+..+.+..+++.|...+..|+...+..+++..        +..     
T Consensus       829 ~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~--------~~~-----  895 (1060)
T PLN03218        829 SWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF--------GEY-----  895 (1060)
T ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh--------ccC-----
Confidence            67999999998755 5677899999998889999999999999998887777665554444321        111     


Q ss_pred             HHHHHHHHHHHHHhcCcccCCCC
Q 037816          623 IHGVLAELLRLMIDEGYVPNKRF  645 (648)
Q Consensus       623 ~~~~~~~~~~~m~~~g~~p~~~~  645 (648)
                       .+.+-.++++|.+.|+.|+-+|
T Consensus       896 -~~~A~~l~~em~~~Gi~p~~~~  917 (1060)
T PLN03218        896 -DPRAFSLLEEAASLGVVPSVSF  917 (1060)
T ss_pred             -hHHHHHHHHHHHHcCCCCCccc
Confidence             1335599999999999999764

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=3.5e-34  Score=326.71  Aligned_cols=556  Identities=12%  Similarity=0.024  Sum_probs=362.0

Q ss_pred             cCCcchhHhhHhHHhhccccCCCc----cCCCCcCCCcchHHHHHHHHhccCCCcchhHHHHHHhhhcCCCCCcCcCCCC
Q 037816           11 NSNFPFCSSLVSPFITKIIQDPTS----STSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVP   86 (648)
Q Consensus        11 ~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~   86 (648)
                      |.+..++..+...+...|+...+.    +.....|+++..+..+...+.+.|++++|...++.+.+.  .         +
T Consensus       326 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~---------~  394 (899)
T TIGR02917       326 PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATEL--D---------P  394 (899)
T ss_pred             CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--C---------C
Confidence            555555666666666665555543    222333445555666666666666666666666666554  1         3


Q ss_pred             ChHHHHHHHHHHHhcCCChhHHHHhhccCCC---CCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHH
Q 037816           87 NATVIWNSLLSFYLKCDQMRNAVKLFDDMPM---RDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIIL  163 (648)
Q Consensus        87 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll  163 (648)
                      .+...+..+...+...|++++|.+.|+.+..   .+......++..+.+.|++++|+.+++++....  |+...++..+.
T Consensus       395 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~  472 (899)
T TIGR02917       395 ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ--PDNASLHNLLG  472 (899)
T ss_pred             CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCcHHHHHHH
Confidence            3455556666666666666666666665542   123344555666666677777777776666543  43333666666


Q ss_pred             HHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccCC---CCcccHHHHHHHHHHCCCchH
Q 037816          164 SACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV---RNVITWTAVISGLVQNQLYEE  240 (648)
Q Consensus       164 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~  240 (648)
                      ..+...|+.+.|...++.+.+.. +.+...+..+...+...|++++|.+.|+.+..   .+..++..+...+.+.|++++
T Consensus       473 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  551 (899)
T TIGR02917       473 AIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEE  551 (899)
T ss_pred             HHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHH
Confidence            66777777777777777666544 34455566666667777777777777766642   244566666677777777777


Q ss_pred             HHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC
Q 037816          241 GLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE  320 (648)
Q Consensus       241 a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  320 (648)
                      |..+++++...+ +.+...+..+...+...|++++|..+++.+.+.. +.+...|..+..+|...|++++|...|+.+.+
T Consensus       552 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  629 (899)
T TIGR02917       552 AVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLA  629 (899)
T ss_pred             HHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            777777765532 2344455666667777777777777777766543 44556677777777777777777777776643


Q ss_pred             ---CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHH
Q 037816          321 ---LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN  397 (648)
Q Consensus       321 ---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  397 (648)
                         .+...+..+..++...|++++|...|+++.+.. +.+..++..+...+...|+++.|..+++.+.+.+ +.+...+.
T Consensus       630 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~  707 (899)
T TIGR02917       630 LQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFE  707 (899)
T ss_pred             hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHH
Confidence               244456666677777777777777777776643 3446666777777777777777777777776654 45556666


Q ss_pred             HHHHHHHhCCCHHHHHHHHhhcC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcH
Q 037816          398 GLINMYSKCGDLEDSIKVFSRMA--PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLV  475 (648)
Q Consensus       398 ~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~  475 (648)
                      .+...+...|++++|...|..+.  .|+..++..+..++.+.|++++|.+.++++.+.. +.+...+..+...|...|++
T Consensus       708 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~  786 (899)
T TIGR02917       708 LEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDY  786 (899)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence            67777777777777777777664  2444556666777777777777777777777653 34566666777777777777


Q ss_pred             HHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 037816          476 NKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKL  553 (648)
Q Consensus       476 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~  553 (648)
                      ++|.+.|+++.+.  .++++.++..+...+...|+ .+|++.++++ ...| ++.++..+...+...|++++|..+++++
T Consensus       787 ~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a  863 (899)
T TIGR02917       787 DKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKA  863 (899)
T ss_pred             HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            7777777777663  34566677777777777777 6677777766 3333 3455666667777777777777777777


Q ss_pred             HhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHH
Q 037816          554 FLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMK  588 (648)
Q Consensus       554 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  588 (648)
                      ++.+|.++.++..++.++.+.|++++|.+++++|+
T Consensus       864 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  898 (899)
T TIGR02917       864 VNIAPEAAAIRYHLALALLATGRKAEARKELDKLL  898 (899)
T ss_pred             HhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            77777777777777777777777777777777765

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=3.3e-33  Score=318.71  Aligned_cols=555  Identities=12%  Similarity=0.036  Sum_probs=417.9

Q ss_pred             chhHhhHhHHhhccccCCCc----cCCCCcCCCcchHHHHHHHHhccCCCcchhHHHHHHhhhcCCCCCcCcCCCCChHH
Q 037816           15 PFCSSLVSPFITKIIQDPTS----STSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATV   90 (648)
Q Consensus        15 ~~~~~l~~~~~~~~~~~~~~----~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (648)
                      ..+..+...|...|+.+.+.    +.-...|++...+..+...+.+.|++++|...++.+.+.  .         +.+..
T Consensus       296 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~---------~~~~~  364 (899)
T TIGR02917       296 PALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGL--D---------PDDPA  364 (899)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--C---------CCCHH
Confidence            33333444444444444442    112233444555566666666677777777776666555  1         34566


Q ss_pred             HHHHHHHHHhcCCChhHHHHhhccCCC---CCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhh
Q 037816           91 IWNSLLSFYLKCDQMRNAVKLFDDMPM---RDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACD  167 (648)
Q Consensus        91 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~  167 (648)
                      ++..+...+.+.|++++|.+.|+.+.+   .+...+..+...+...|++++|.+.|+.+.+..  |+.......++..+.
T Consensus       365 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~  442 (899)
T TIGR02917       365 ALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLD--PELGRADLLLILSYL  442 (899)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC--CcchhhHHHHHHHHH
Confidence            666677777777777777777776542   244556666666777777777777777776654  333335555666677


Q ss_pred             ccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccCC---CCcccHHHHHHHHHHCCCchHHHHH
Q 037816          168 RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV---RNVITWTAVISGLVQNQLYEEGLKL  244 (648)
Q Consensus       168 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~  244 (648)
                      ..|+.+.|..+++.+.+.. +++..++..+...+...|++++|.+.|+++..   .+...+..+...+...|++++|.+.
T Consensus       443 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  521 (899)
T TIGR02917       443 RSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQR  521 (899)
T ss_pred             hcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence            7777777777777776643 55667778888888888888888888877642   2445566777778888888888888


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC---C
Q 037816          245 FVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE---L  321 (648)
Q Consensus       245 ~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~  321 (648)
                      |+++...+ +.+..++..+...+...|+.++|...+..+.+.+ +.+...+..++..|.+.|++++|..+++.+.+   .
T Consensus       522 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  599 (899)
T TIGR02917       522 FEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPD  599 (899)
T ss_pred             HHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence            88886643 2355667777777888888888888888887664 44556677788888888888888888888764   3


Q ss_pred             CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHH
Q 037816          322 DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLIN  401 (648)
Q Consensus       322 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~  401 (648)
                      +...|..+..++...|++++|...|+++.+.. +.+...+..+..++...|++++|..+++.+.+.. +.+...+..++.
T Consensus       600 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~  677 (899)
T TIGR02917       600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQ  677 (899)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence            55678888888888889999998888887764 4456677788888888889999998888888754 556778888888


Q ss_pred             HHHhCCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHH
Q 037816          402 MYSKCGDLEDSIKVFSRMAP---RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKG  478 (648)
Q Consensus       402 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A  478 (648)
                      .+...|++++|.++++.+..   .+...+..+...+...|++++|...++++...+  |+..++..+..++...|++++|
T Consensus       678 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A  755 (899)
T TIGR02917       678 LLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEA  755 (899)
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHH
Confidence            88889999999888888763   356677888888899999999999999988854  6667777888889999999999


Q ss_pred             HHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 037816          479 MEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM--PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLA  556 (648)
Q Consensus       479 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  556 (648)
                      .+.++++.+.  .+.+...+..+...|...|++++|.+.|+++  ..++++..+..+...+...|+ ++|+..++++++.
T Consensus       756 ~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~  832 (899)
T TIGR02917       756 VKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL  832 (899)
T ss_pred             HHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence            9999999873  4567888999999999999999999999988  334467888999999999999 8899999999999


Q ss_pred             CCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037816          557 QPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGV  592 (648)
Q Consensus       557 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~  592 (648)
                      .|+++..+..++.++...|++++|.++++++.+.+.
T Consensus       833 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~  868 (899)
T TIGR02917       833 APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP  868 (899)
T ss_pred             CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            999999999999999999999999999999988664

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.96  E-value=1.4e-24  Score=247.94  Aligned_cols=560  Identities=11%  Similarity=0.036  Sum_probs=399.7

Q ss_pred             cCCcchhHhhHhHHhhccccCCCc----cCCCCcCCCcchH----------------HHHHHHHhccCCCcchhHHHHHH
Q 037816           11 NSNFPFCSSLVSPFITKIIQDPTS----STSKLVLDNYVDI----------------SRLLSISAKEGHFHLGPSLHASF   70 (648)
Q Consensus        11 ~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~p~~~~~~----------------~~ll~~~~~~~~~~~a~~~~~~~   70 (648)
                      |.|+..+..+...+.+.|+.+.+.    +...+.|+++...                ......+.+.|++++|...++.+
T Consensus        59 p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~  138 (1157)
T PRK11447         59 PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKL  138 (1157)
T ss_pred             CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            889999999999999999988885    5557777444432                33344688899999999999999


Q ss_pred             hhhcCCCCCcCcCCCCChHHHH-HHHHHHHhcCCChhHHHHhhccCCC--C-CcccHHHHHHHHHhcCCchHHHHHHHHH
Q 037816           71 IKTFEPFDNQNVYNVPNATVIW-NSLLSFYLKCDQMRNAVKLFDDMPM--R-DTVSWNTMVSGFLRNGEFDMGFGFFKRS  146 (648)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~y~~li~~~~~~g~~~~A~~~~~~m  146 (648)
                      .+.   -        +|+...- ..+.......|+.++|++.|+.+.+  | +...+..+...+...|++++|+..|+++
T Consensus       139 l~~---~--------p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~  207 (1157)
T PRK11447        139 FNG---A--------PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQM  207 (1157)
T ss_pred             ccC---C--------CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence            876   2        4443321 1222223346999999999999883  3 5667888889999999999999999988


Q ss_pred             HHcCC------------------CCCcHhHHHH----------------------------------HHHHhhccCChHH
Q 037816          147 LELGF------------------YQLDQASFTI----------------------------------ILSACDRSELSLV  174 (648)
Q Consensus       147 ~~~~~------------------~p~~~~~~~~----------------------------------ll~~~~~~~~~~~  174 (648)
                      .+...                  .+.....+..                                  ....+...|++++
T Consensus       208 ~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~  287 (1157)
T PRK11447        208 AKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGK  287 (1157)
T ss_pred             hhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHH
Confidence            65321                  0000000110                                  1122445677777


Q ss_pred             HHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccCC--CCc---ccHH------------HHHHHHHHCCC
Q 037816          175 SKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV--RNV---ITWT------------AVISGLVQNQL  237 (648)
Q Consensus       175 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~------------~li~~~~~~g~  237 (648)
                      |...++..++.. +.+...+..+..+|.+.|++++|+..|++..+  |+.   ..|.            .....+.+.|+
T Consensus       288 A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~  366 (1157)
T PRK11447        288 AIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANN  366 (1157)
T ss_pred             HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCC
Confidence            777777777654 44566777777777777777777777776653  221   1111            11334566777


Q ss_pred             chHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 037816          238 YEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEF  317 (648)
Q Consensus       238 ~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  317 (648)
                      +++|+..|++..+.. +.+...+..+...+...|++++|++.++.+.+.. +.+...+..+...|. .++.++|..+++.
T Consensus       367 ~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~  443 (1157)
T PRK11447        367 LAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIAS  443 (1157)
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHh
Confidence            777777777776632 1234455566667777777777777777777653 333445555555553 3466777777766


Q ss_pred             ccCCC------------cccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 037816          318 AEELD------------GVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII  385 (648)
Q Consensus       318 ~~~~~------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  385 (648)
                      +....            ...+..+...+...|++++|+..|++..+.. +-+...+..+...+...|++++|...++.+.
T Consensus       444 l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al  522 (1157)
T PRK11447        444 LSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLA  522 (1157)
T ss_pred             CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            54321            1223445566778899999999999988764 3356667778888999999999999999988


Q ss_pred             HhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCC----Ch---------hHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037816          386 KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR----NS---------VSWNSMIAAFARHGNGFKALELYEEMKL  452 (648)
Q Consensus       386 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~---------~~~~~l~~~~~~~~~~~~A~~~~~~m~~  452 (648)
                      +.. +.++..+..+...+...++.++|...++.+...    +.         ..+..+...+...|+.++|..+++.   
T Consensus       523 ~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~---  598 (1157)
T PRK11447        523 QQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ---  598 (1157)
T ss_pred             HcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh---
Confidence            654 445555555666677889999999999887632    11         1123456678889999999998872   


Q ss_pred             cCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHH
Q 037816          453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPD-VLVW  530 (648)
Q Consensus       453 ~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~  530 (648)
                        .+++...+..+...+.+.|++++|+..|+++.+.  -+.+...+..++..|...|++++|++.++.. ...|+ ...+
T Consensus       599 --~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~  674 (1157)
T PRK11447        599 --QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQ  674 (1157)
T ss_pred             --CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHH
Confidence              3456667778889999999999999999999873  3447889999999999999999999999988 44554 5667


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc------cHHHHHHHHHhcCChHHHHHHHHHHHh-CCCCC
Q 037816          531 QALLGACSIHGDSEMGKYAAEKLFLAQPDSPA------PYILMANIYSCSGRWKERAKAIKRMKE-MGVDK  594 (648)
Q Consensus       531 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~~~  594 (648)
                      ..+..++...|++++|.++++++++..|+++.      ++..++.++...|++++|++.|++... .|+.|
T Consensus       675 ~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~  745 (1157)
T PRK11447        675 RRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP  745 (1157)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence            77888899999999999999999988766543      666779999999999999999999854 34443

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.96  E-value=6.6e-24  Score=242.40  Aligned_cols=550  Identities=10%  Similarity=0.008  Sum_probs=356.9

Q ss_pred             hhHhHHhhccccCCCc----cCCCCcCCCcchHHHHHHHHhccCCCcchhHHHHHHhhhcCCCCCcCcCCCCChH-HHH-
Q 037816           19 SLVSPFITKIIQDPTS----STSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNAT-VIW-   92 (648)
Q Consensus        19 ~l~~~~~~~~~~~~~~----~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-   92 (648)
                      ...+.+...++++-+.    +...+.|+|+..+......+.+.|+.++|...++.+.+.            .|+. ... 
T Consensus        33 ~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~------------~P~~~~~~~  100 (1157)
T PRK11447         33 EQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQL------------APDSNAYRS  100 (1157)
T ss_pred             HHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh------------CCCChHHHH
Confidence            3344566666666654    667889999999999999999999999999999999988            3433 222 


Q ss_pred             ---------------HHHHHHHhcCCChhHHHHhhccCCCCCcccHH----HHHHHHHhcCCchHHHHHHHHHHHcCCCC
Q 037816           93 ---------------NSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWN----TMVSGFLRNGEFDMGFGFFKRSLELGFYQ  153 (648)
Q Consensus        93 ---------------~~li~~~~~~g~~~~A~~~~~~~~~~~~~~y~----~li~~~~~~g~~~~A~~~~~~m~~~~~~p  153 (648)
                                     ..+...+.+.|++++|+..|+.+.+.+.....    .........|+.++|+..|+++.+..  |
T Consensus       101 ~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~--P  178 (1157)
T PRK11447        101 SRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY--P  178 (1157)
T ss_pred             HHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC--C
Confidence                           33445688999999999999998743222211    11112234599999999999999875  7


Q ss_pred             CcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCC----------------CCh---hHHH-------------------
Q 037816          154 LDQASFTIILSACDRSELSLVSKMIHCLVYLCGYE----------------EEV---TVGN-------------------  195 (648)
Q Consensus       154 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----------------~~~---~~~~-------------------  195 (648)
                      +....+..+...+...|+.++|...++.+.+....                ++.   ..+.                   
T Consensus       179 ~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L  258 (1157)
T PRK11447        179 GNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQL  258 (1157)
T ss_pred             CCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHH
Confidence            77768888899999999999999999887653210                000   0011                   


Q ss_pred             ---------------HHHHHhHhcCChhHHHHHhcccCC--C-CcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCC-C
Q 037816          196 ---------------ALITSYFKCGSSSSGRKVFGEMRV--R-NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINP-N  256 (648)
Q Consensus       196 ---------------~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~  256 (648)
                                     .....+...|++++|+..|++...  | +...+..+...+.+.|++++|+..|++..+..... .
T Consensus       259 ~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~  338 (1157)
T PRK11447        259 AEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSN  338 (1157)
T ss_pred             HHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccc
Confidence                           112233445666666666655542  2 34455555666666666666666666655432111 1


Q ss_pred             hhhH------------HHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCC---
Q 037816          257 SLTY------------LSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEEL---  321 (648)
Q Consensus       257 ~~t~------------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---  321 (648)
                      ...+            ......+...|++++|...++.+.+.. +.+...+..+..++...|++++|++.|+++.+.   
T Consensus       339 ~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~  417 (1157)
T PRK11447        339 RDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG  417 (1157)
T ss_pred             hhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            0111            111223445566666666666665543 233444555566666666666666666655542   


Q ss_pred             CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--------cCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCch
Q 037816          322 DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIE--------IDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNP  393 (648)
Q Consensus       322 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~  393 (648)
                      +...+..+...|. .++.++|..+++.+......        .....+..+...+...|++++|.+.+++..+.. +.++
T Consensus       418 ~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~  495 (1157)
T PRK11447        418 NTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSV  495 (1157)
T ss_pred             CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH
Confidence            2223333444442 34556666555543221100        001123334455566777777777777777654 4455


Q ss_pred             hHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH---------H
Q 037816          394 FVNNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDV---------T  461 (648)
Q Consensus       394 ~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~---------~  461 (648)
                      ..+..+...|.+.|++++|...++++.   +.+...+..+...+...++.++|+..++.+......++..         .
T Consensus       496 ~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~  575 (1157)
T PRK11447        496 WLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQ  575 (1157)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhH
Confidence            666677777777777777777777653   2244444444455566777777777777654322222211         1


Q ss_pred             HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 037816          462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSI  539 (648)
Q Consensus       462 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~  539 (648)
                      +..+...+...|+.++|..+++.      .+.+...+..+...+.+.|++++|++.|+++ ...| +...+..++..+..
T Consensus       576 ~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~  649 (1157)
T PRK11447        576 VLETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIA  649 (1157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            22345567778888888887761      2446677788999999999999999999988 4455 47788889999999


Q ss_pred             cCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037816          540 HGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMG  591 (648)
Q Consensus       540 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  591 (648)
                      .|++++|++.++++.+..|+++.++..++.++...|++++|.++++++....
T Consensus       650 ~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~  701 (1157)
T PRK11447        650 QGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA  701 (1157)
T ss_pred             CCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence            9999999999999999999999999999999999999999999999988754

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.93  E-value=7.7e-21  Score=207.33  Aligned_cols=540  Identities=11%  Similarity=0.056  Sum_probs=339.1

Q ss_pred             cCCcchhHhhHhHHhhccccCCCc----cCCCCcCCCcchHHHHHHHHhccCCCcchhHHHHHHhhhcCCCCCcCcCCCC
Q 037816           11 NSNFPFCSSLVSPFITKIIQDPTS----STSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVP   86 (648)
Q Consensus        11 ~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~   86 (648)
                      |.|..++..|.+.|.+.|++.++.    +.....|+|.. |..++...   ++.++|..+++++.+.   .        |
T Consensus        75 P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~-~~~~La~i---~~~~kA~~~ye~l~~~---~--------P  139 (987)
T PRK09782         75 PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDAR-LERSLAAI---PVEVKSVTTVEELLAQ---Q--------K  139 (987)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHH-HHHHHHHh---ccChhHHHHHHHHHHh---C--------C
Confidence            999999999999999999999986    55577774444 44444333   8999999999999999   2        3


Q ss_pred             ChHHHHHHHHHH--------HhcCCChhHHHHhhccCCCCC--cccHHHH-HHHHHhcCCchHHHHHHHHHHHcCCCCCc
Q 037816           87 NATVIWNSLLSF--------YLKCDQMRNAVKLFDDMPMRD--TVSWNTM-VSGFLRNGEFDMGFGFFKRSLELGFYQLD  155 (648)
Q Consensus        87 ~~~~~~~~li~~--------~~~~g~~~~A~~~~~~~~~~~--~~~y~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~p~~  155 (648)
                      -+..++..+...        |.+.+....+++  .....|+  ....... ...|.+.|++++|+..+.++.+.+  |..
T Consensus       140 ~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~--pl~  215 (987)
T PRK09782        140 ACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN--TLS  215 (987)
T ss_pred             CChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC--CCC
Confidence            446677666666        787777777777  3333343  4433444 889999999999999999999987  555


Q ss_pred             HhHHHHHHHHhhc-cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccCC-----CCcccH----
Q 037816          156 QASFTIILSACDR-SELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV-----RNVITW----  225 (648)
Q Consensus       156 ~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~----  225 (648)
                      ......+-.++.. .++ +.+..++..    .+..+...+..+...|.+.|+.++|.+++++++.     |+..+|    
T Consensus       216 ~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l  290 (987)
T PRK09782        216 AAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLL  290 (987)
T ss_pred             HHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHH
Confidence            5356666667766 355 666666442    3346888999999999999999999999998862     211111    


Q ss_pred             --------------------------HHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHh--hccCChHHHH
Q 037816          226 --------------------------TAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC--SGLQALCEGR  277 (648)
Q Consensus       226 --------------------------~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~--~~~~~~~~a~  277 (648)
                                                -.++..+.+.++++.+.++.      ++.|.....  .++..  ...+...++.
T Consensus       291 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~--~~r~~~~~~~~~~~~~~  362 (987)
T PRK09782        291 SKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL------ATLPANEML--EERYAVSVATRNKAEAL  362 (987)
T ss_pred             HhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh------cCCCcchHH--HHHHhhccccCchhHHH
Confidence                                      11245556666666555442      133433321  22222  2234555555


Q ss_pred             HHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC-C-Ccc----cHHHHHHHHHHcCC---HHHHHHH---
Q 037816          278 QIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE-L-DGV----SMTVILVGFAQNGF---EEEAMQL---  345 (648)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-~~~----~~~~li~~~~~~~~---~~~a~~~---  345 (648)
                      +.+..|.+.. +-+....--+.-...+.|+.++|.++|+..-. + +..    .-.-++..|.+.+.   ..++..+   
T Consensus       363 ~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~  441 (987)
T PRK09782        363 RLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKP  441 (987)
T ss_pred             HHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccc
Confidence            5565555542 22333333334445566777777777766654 1 111    12234444544443   2222222   


Q ss_pred             -------------------HHHHHHc-CC-Cc--CHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 037816          346 -------------------FVKMVKA-GI-EI--DPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINM  402 (648)
Q Consensus       346 -------------------~~~m~~~-~~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  402 (648)
                                         +...... +. ++  +...+..+..++.. ++.++|...+.......  |+......+...
T Consensus       442 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~a  518 (987)
T PRK09782        442 LPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQ  518 (987)
T ss_pred             cccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHH
Confidence                               1111111 11 22  44455555555544 66667777666655443  443333334444


Q ss_pred             HHhCCCHHHHHHHHhhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 037816          403 YSKCGDLEDSIKVFSRMAP--RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGME  480 (648)
Q Consensus       403 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~  480 (648)
                      +...|++++|...|+++..  ++...+..+...+.+.|+.++|...+++..+.+ +++...+..+...+...|++++|..
T Consensus       519 l~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~  597 (987)
T PRK09782        519 AYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALN  597 (987)
T ss_pred             HHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHH
Confidence            5577777777777776542  333445555666777777777777777777654 2222233333334445577777777


Q ss_pred             HHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 037816          481 FLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPD-VLVWQALLGACSIHGDSEMGKYAAEKLFLAQP  558 (648)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p  558 (648)
                      .+++..+.   .|+...+..+..++.+.|++++|+..+++. ...|+ ...+..+..++...|++++|+..++++++..|
T Consensus       598 ~~~~AL~l---~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P  674 (987)
T PRK09782        598 DLTRSLNI---APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP  674 (987)
T ss_pred             HHHHHHHh---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            77777653   456667777777777777777777777776 44554 55566666677777777777777777777777


Q ss_pred             CCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816          559 DSPAPYILMANIYSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       559 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  590 (648)
                      .++.++..++.++...|++++|+..+++..+.
T Consensus       675 ~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l  706 (987)
T PRK09782        675 DDPALIRQLAYVNQRLDDMAATQHYARLVIDD  706 (987)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            77777777777777777777777777777653

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.91  E-value=1.8e-19  Score=196.65  Aligned_cols=256  Identities=11%  Similarity=0.065  Sum_probs=191.7

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHc-C-CCcCHHHHHHHHHHHhccCC---hhHHHHH----------------------HHH
Q 037816          331 VGFAQNGFEEEAMQLFVKMVKA-G-IEIDPNMVSAVLGVFGVDTS---LGLGKQI----------------------HSL  383 (648)
Q Consensus       331 ~~~~~~~~~~~a~~~~~~m~~~-~-~~p~~~~~~~ll~~~~~~~~---~~~a~~~----------------------~~~  383 (648)
                      -...+.|+.++|.++|+..... + ..++.....-++..+.+.+.   ..++..+                      +..
T Consensus       384 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  463 (987)
T PRK09782        384 WQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPA  463 (987)
T ss_pred             HHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHH
Confidence            3456789999999999988762 1 23344444466777766655   2222222                      111


Q ss_pred             HHH-hCC-CC--chhHHHHHHHHHHhCCCHHHHHHHHhhcC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 037816          384 IIK-SDF-TS--NPFVNNGLINMYSKCGDLEDSIKVFSRMA--PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP  457 (648)
Q Consensus       384 ~~~-~~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p  457 (648)
                      ... .+. ++  +...+..+..++.. ++.++|...+.+..  .|+......+...+...|++++|...|+++...  +|
T Consensus       464 ~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p  540 (987)
T PRK09782        464 IVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DM  540 (987)
T ss_pred             HHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CC
Confidence            111 111 34  66778888888876 88888999777665  344333333444556899999999999998663  45


Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 037816          458 TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPDVLVWQALLGA  536 (648)
Q Consensus       458 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~  536 (648)
                      +...+..+..++.+.|++++|...+++..+. . +++...+..+...+.+.|++++|...+++. ...|+...+..+..+
T Consensus       541 ~~~a~~~la~all~~Gd~~eA~~~l~qAL~l-~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~  618 (987)
T PRK09782        541 SNEDLLAAANTAQAAGNGAARDRWLQQAEQR-G-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATI  618 (987)
T ss_pred             CcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-C-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            5566667778889999999999999999874 2 334444444445555679999999999998 777888889999999


Q ss_pred             HHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037816          537 CSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMG  591 (648)
Q Consensus       537 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  591 (648)
                      +.+.|++++|+..++++++.+|+++..+..++.++...|++++|++.+++..+..
T Consensus       619 l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~  673 (987)
T PRK09782        619 YRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL  673 (987)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999999999998853

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.91  E-value=8.9e-21  Score=183.46  Aligned_cols=444  Identities=12%  Similarity=0.095  Sum_probs=354.8

Q ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhH
Q 037816          123 WNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYF  202 (648)
Q Consensus       123 y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  202 (648)
                      ...|..-..+.|++++|++.....-+.+  |+.......+-..+....+.+.....-....+.. +--..+|+.+.+.+-
T Consensus        51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~k  127 (966)
T KOG4626|consen   51 RLELAHRLYQGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILK  127 (966)
T ss_pred             HHHHHHHHHhccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHH
Confidence            4556666778899999998877665554  4444244444444556666665554444444322 334578899999999


Q ss_pred             hcCChhHHHHHhcccCC--C-CcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHH-HhhccCChHHHHH
Q 037816          203 KCGSSSSGRKVFGEMRV--R-NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVM-ACSGLQALCEGRQ  278 (648)
Q Consensus       203 ~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~-~~~~~~~~~~a~~  278 (648)
                      ..|+++.|+.+++.+.+  | .+..|..+..++...|+.+.|.+.|.+..+  +.|+.....+-+. .+...|++++|..
T Consensus       128 erg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~  205 (966)
T KOG4626|consen  128 ERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKA  205 (966)
T ss_pred             HhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHH
Confidence            99999999999998864  3 567899999999999999999999998876  5577665544333 3455788999998


Q ss_pred             HHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCcc---cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 037816          279 IHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGV---SMTVILVGFAQNGFEEEAMQLFVKMVKAGIE  355 (648)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~  355 (648)
                      .+.+..+.. +-=...|+.|...+-.+|++..|+..|++...-|+.   .|-.|...|...+.++.|+..|.+..... +
T Consensus       206 cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-p  283 (966)
T KOG4626|consen  206 CYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-P  283 (966)
T ss_pred             HHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-C
Confidence            888877653 233557888999999999999999999999875543   57778888999999999999998887653 3


Q ss_pred             cCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhHHHHHHH
Q 037816          356 IDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP---RNSVSWNSMIA  432 (648)
Q Consensus       356 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~  432 (648)
                      .....+..+...|...|.++.|+..+++..... +.-+..|+.|..++-..|++.+|.+.|.+...   .-..+.+.|..
T Consensus       284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgn  362 (966)
T KOG4626|consen  284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGN  362 (966)
T ss_pred             cchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence            345677777778889999999999999998764 44467899999999999999999999998763   34567888999


Q ss_pred             HHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHhhhcCC
Q 037816          433 AFARHGNGFKALELYEEMKLEGVEPT-DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP-RAEHYACVVDMVGRAGL  510 (648)
Q Consensus       433 ~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~  510 (648)
                      .|...|.+++|..+|....+  +.|. ...++.|...|-++|++++|+..|++..+   +.| -...|+.+...|-..|+
T Consensus       363 i~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~~NmGnt~ke~g~  437 (966)
T KOG4626|consen  363 IYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADALSNMGNTYKEMGD  437 (966)
T ss_pred             HHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHHHhcchHHHHhhh
Confidence            99999999999999999887  5565 45788899999999999999999999974   677 46789999999999999


Q ss_pred             HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHH
Q 037816          511 LIEARSFIERM-PVKPD-VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKE  579 (648)
Q Consensus       511 ~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~  579 (648)
                      .+.|++.+.+. .+.|. ...++.|...|...|+..+|++.|+.++++.|+.+.+|..++.++---.+|.+
T Consensus       438 v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D  508 (966)
T KOG4626|consen  438 VSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD  508 (966)
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence            99999999988 77776 56788999999999999999999999999999999999999887665544443

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.90  E-value=8e-21  Score=183.77  Aligned_cols=421  Identities=14%  Similarity=0.089  Sum_probs=340.5

Q ss_pred             HHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccCC---CCcccHHHHHHHHHHC
Q 037816          159 FTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV---RNVITWTAVISGLVQN  235 (648)
Q Consensus       159 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~  235 (648)
                      ...|.....+.|++.+|++.-..+-..+ +.+....-.+-..+....+.++...--....+   .-..+|..+.+.+-..
T Consensus        51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker  129 (966)
T KOG4626|consen   51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER  129 (966)
T ss_pred             HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence            3445555566778888877766654433 22222333333445555565554433222222   2456899999999999


Q ss_pred             CCchHHHHHHHHHHhCCCCC-ChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchh-HHHHHHHHHHhcCCHHHHHH
Q 037816          236 QLYEEGLKLFVKMHLGLINP-NSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLC-IESALMDMYSKCGSVEDAWQ  313 (648)
Q Consensus       236 g~~~~a~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~  313 (648)
                      |++++|+.+++.+.+  ++| ....|..+..++...|+.+.|.+.+.+.++.+  |+.. ..+.+....-..|++++|..
T Consensus       130 g~~~~al~~y~~aie--l~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~  205 (966)
T KOG4626|consen  130 GQLQDALALYRAAIE--LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKA  205 (966)
T ss_pred             chHHHHHHHHHHHHh--cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHH
Confidence            999999999999987  345 45679999999999999999999999888754  4433 33445555666799999999


Q ss_pred             HHHhccCC---CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHhccCChhHHHHHHHHHHHhCC
Q 037816          314 IFEFAEEL---DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEID-PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF  389 (648)
Q Consensus       314 ~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  389 (648)
                      .|.+..+.   =.+.|+.|...+-.+|+...|++.|++....  .|+ ...|..|-..+...+.++.|...+....... 
T Consensus       206 cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-  282 (966)
T KOG4626|consen  206 CYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-  282 (966)
T ss_pred             HHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-
Confidence            99887663   3467999999999999999999999999875  344 5678888888999999999999988877654 


Q ss_pred             CCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC--CC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 037816          390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP--RN-SVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT-DVTFLSL  465 (648)
Q Consensus       390 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l  465 (648)
                      +....++..+...|-..|.++-|+..|++..+  |+ ...|+.|..++-..|+..+|...|.+....  .|+ ....+.|
T Consensus       283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NL  360 (966)
T KOG4626|consen  283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNL  360 (966)
T ss_pred             CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHH
Confidence            45567788888889999999999999998864  43 578999999999999999999999999984  464 5678899


Q ss_pred             HHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCh
Q 037816          466 LHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPD-VLVWQALLGACSIHGDS  543 (648)
Q Consensus       466 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~  543 (648)
                      ...+...|.+++|..+|....+-  .+.-...++.|...|-..|++++|+..+++. .++|+ ...++.+...|-..|+.
T Consensus       361 gni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v  438 (966)
T KOG4626|consen  361 GNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDV  438 (966)
T ss_pred             HHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhH
Confidence            99999999999999999999762  3336778899999999999999999999998 88998 66799999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037816          544 EMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMG  591 (648)
Q Consensus       544 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  591 (648)
                      ..|++.+.+++..+|.-..++..|+.+|..+|++.+|++-|+..++..
T Consensus       439 ~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk  486 (966)
T KOG4626|consen  439 SAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK  486 (966)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence            999999999999999999999999999999999999999999998843

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.88  E-value=1.4e-18  Score=186.71  Aligned_cols=251  Identities=14%  Similarity=0.060  Sum_probs=200.1

Q ss_pred             cCCHHHHHHHHHHHHHcC-CCc-CHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHH
Q 037816          336 NGFEEEAMQLFVKMVKAG-IEI-DPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSI  413 (648)
Q Consensus       336 ~~~~~~a~~~~~~m~~~~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~  413 (648)
                      .+++++|++.|++..+.+ ..| ....+..+...+...|++++|...++...... +.....|..+...+...|++++|.
T Consensus       307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~  385 (615)
T TIGR00990       307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE  385 (615)
T ss_pred             hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence            467888888888888764 223 34556666777778889999999888887764 344667778888888999999999


Q ss_pred             HHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 037816          414 KVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHR  490 (648)
Q Consensus       414 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~  490 (648)
                      ..|+...   +.+...|..+...+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|+..+++..+.  
T Consensus       386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--  462 (615)
T TIGR00990       386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--  462 (615)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence            9988765   3467788888999999999999999999998854 235667777888889999999999999999873  


Q ss_pred             CCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCH-H-------HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 037816          491 ISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPDV-L-------VWQALLGACSIHGDSEMGKYAAEKLFLAQPDSP  561 (648)
Q Consensus       491 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~  561 (648)
                      .+.+...++.+...+...|++++|++.|++. .+.|+. .       .++..+..+...|++++|+.+++++++.+|++.
T Consensus       463 ~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~  542 (615)
T TIGR00990       463 FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECD  542 (615)
T ss_pred             CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence            4457888999999999999999999999986 444431 1       112222233446999999999999999999998


Q ss_pred             ccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816          562 APYILMANIYSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       562 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  590 (648)
                      .++..++.++...|++++|++++++..+.
T Consensus       543 ~a~~~la~~~~~~g~~~eAi~~~e~A~~l  571 (615)
T TIGR00990       543 IAVATMAQLLLQQGDVDEALKLFERAAEL  571 (615)
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            89999999999999999999999998764

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.86  E-value=2.8e-19  Score=182.61  Aligned_cols=293  Identities=12%  Similarity=0.059  Sum_probs=203.5

Q ss_pred             HHhcCCHHHHHHHHHhccCC---CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHHhccCChh
Q 037816          302 YSKCGSVEDAWQIFEFAEEL---DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEID---PNMVSAVLGVFGVDTSLG  375 (648)
Q Consensus       302 ~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~  375 (648)
                      +...|++++|...|.++.+.   +..++..+...+...|++++|..+++.+...+..++   ...+..+...+...|+++
T Consensus        45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~  124 (389)
T PRK11788         45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD  124 (389)
T ss_pred             HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence            34445555555555555442   222344555555566666666666665555322111   134455555666666666


Q ss_pred             HHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCC--C------hhHHHHHHHHHHHcCChHHHHHHH
Q 037816          376 LGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR--N------SVSWNSMIAAFARHGNGFKALELY  447 (648)
Q Consensus       376 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~------~~~~~~l~~~~~~~~~~~~A~~~~  447 (648)
                      .|..+++.+.+.. +.+..++..++..+.+.|++++|.+.++.+.+.  +      ...+..+...+...|++++|...+
T Consensus       125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  203 (389)
T PRK11788        125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL  203 (389)
T ss_pred             HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            6666666665442 344556666666677777777777766665421  1      123456677788889999999999


Q ss_pred             HHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC
Q 037816          448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPD  526 (648)
Q Consensus       448 ~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~  526 (648)
                      +++.+.. +.+...+..+...+.+.|++++|.++++++.+. +......++..++.+|.+.|++++|.+.++++ ...|+
T Consensus       204 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~  281 (389)
T PRK11788        204 KKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPG  281 (389)
T ss_pred             HHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            9988754 234567777888899999999999999999864 22223566788999999999999999999988 56788


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCCCCce
Q 037816          527 VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSC---SGRWKERAKAIKRMKEMGVDKETGI  598 (648)
Q Consensus       527 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~  598 (648)
                      ...+..++..+.+.|++++|...++++++..|++. .+..+...+..   .|+.+++..++++|.+.++.|+|..
T Consensus       282 ~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~  355 (389)
T PRK11788        282 ADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY  355 (389)
T ss_pred             chHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence            77778888999999999999999999999988875 45555555443   5699999999999999999888853

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.84  E-value=3.6e-17  Score=175.10  Aligned_cols=369  Identities=11%  Similarity=-0.008  Sum_probs=280.1

Q ss_pred             hcCChhHHHHHhcccCCC------CcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHH
Q 037816          203 KCGSSSSGRKVFGEMRVR------NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEG  276 (648)
Q Consensus       203 ~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a  276 (648)
                      +..+++.-.-.|+..++.      +......++..+.+.|++++|..+++........+.. ....++.+....|+++.|
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~-~l~~l~~~~l~~g~~~~A   95 (656)
T PRK15174         17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRD-LLRRWVISPLASSQPDAV   95 (656)
T ss_pred             hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchh-HHHHHhhhHhhcCCHHHH
Confidence            455565555555554421      3334556678888999999999999998775433333 344444566678999999


Q ss_pred             HHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 037816          277 RQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE--L-DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAG  353 (648)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  353 (648)
                      ...++.+.+.. +.+...+..+...+...|++++|.+.+++...  | +...+..+...+...|++++|...++.+....
T Consensus        96 ~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~  174 (656)
T PRK15174         96 LQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV  174 (656)
T ss_pred             HHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence            99999998874 45566788888999999999999999998876  3 45577888889999999999999999887664


Q ss_pred             CCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhHHHHH
Q 037816          354 IEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP---RNSVSWNSM  430 (648)
Q Consensus       354 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l  430 (648)
                      .. +...+..+ ..+...|++++|...++.+.+....++...+..+...+...|++++|+..+++...   .+...+..+
T Consensus       175 P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~L  252 (656)
T PRK15174        175 PP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSL  252 (656)
T ss_pred             CC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            32 23333333 34778899999999999887765444455556667788899999999999988753   366778888


Q ss_pred             HHHHHHcCChHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhh
Q 037816          431 IAAFARHGNGFK----ALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG  506 (648)
Q Consensus       431 ~~~~~~~~~~~~----A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~  506 (648)
                      ...+...|++++    |...+++..+.. +.+...+..+...+...|++++|...++++.+.  -+.+...+..+..+|.
T Consensus       253 g~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~  329 (656)
T PRK15174        253 GLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALR  329 (656)
T ss_pred             HHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence            999999999986    899999998853 235678888899999999999999999999873  2336677888899999


Q ss_pred             hcCCHHHHHHHHHhC-CCCCCHHH-HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHH
Q 037816          507 RAGLLIEARSFIERM-PVKPDVLV-WQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAI  584 (648)
Q Consensus       507 ~~g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  584 (648)
                      +.|++++|.+.++++ ...|+... +..+..++...|+.++|+..|+++++..|++.            ...+++|...+
T Consensus       330 ~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~~~  397 (656)
T PRK15174        330 QVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLLAL  397 (656)
T ss_pred             HCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHHHH
Confidence            999999999999988 55666544 34456778899999999999999999998864            23444555555


Q ss_pred             HHHHhC
Q 037816          585 KRMKEM  590 (648)
Q Consensus       585 ~~m~~~  590 (648)
                      .+..+.
T Consensus       398 ~~~~~~  403 (656)
T PRK15174        398 DGQISA  403 (656)
T ss_pred             HHHHHh
Confidence            555543

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.84  E-value=2e-16  Score=170.18  Aligned_cols=252  Identities=11%  Similarity=0.035  Sum_probs=171.2

Q ss_pred             CCHHHHHHHHHhccCC------CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHH
Q 037816          306 GSVEDAWQIFEFAEEL------DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ  379 (648)
Q Consensus       306 ~~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~  379 (648)
                      +++++|.+.|+...+.      ....|+.+...+...|++++|+..|++..+.. +-....|..+...+...|++++|..
T Consensus       308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~  386 (615)
T TIGR00990       308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEE  386 (615)
T ss_pred             hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHH
Confidence            4566666666555431      22345555666666777777777777766542 2234466666666677777777777


Q ss_pred             HHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 037816          380 IHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP---RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVE  456 (648)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~  456 (648)
                      .++.+.+.. +.+..++..+...+...|++++|...|++...   .+...+..+...+.+.|++++|+..+++..+.. +
T Consensus       387 ~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P  464 (615)
T TIGR00990       387 DFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-P  464 (615)
T ss_pred             HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C
Confidence            777766653 44566777777788888888888888877652   345667777778888888888888888887643 2


Q ss_pred             CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh------hHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HH
Q 037816          457 PTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRA------EHYACVVDMVGRAGLLIEARSFIERM-PVKPD-VL  528 (648)
Q Consensus       457 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~  528 (648)
                      .+...+..+...+...|++++|...|++..+. .-..+.      ..++.....+...|++++|.+++++. .+.|+ ..
T Consensus       465 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l-~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~  543 (615)
T TIGR00990       465 EAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL-EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDI  543 (615)
T ss_pred             CChHHHHHHHHHHHHccCHHHHHHHHHHHHhc-CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence            35667777888888888888888888887763 111111      11222333344568889999888886 55554 44


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 037816          529 VWQALLGACSIHGDSEMGKYAAEKLFLAQPDSP  561 (648)
Q Consensus       529 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~  561 (648)
                      .+..+...+...|++++|+..|+++.++.+...
T Consensus       544 a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~  576 (615)
T TIGR00990       544 AVATMAQLLLQQGDVDEALKLFERAAELARTEG  576 (615)
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHhccHH
Confidence            677888888899999999999999888776543

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.83  E-value=2.9e-16  Score=171.90  Aligned_cols=364  Identities=9%  Similarity=-0.005  Sum_probs=190.2

Q ss_pred             HHHHHHHHhHhcCChhHHHHHhcccC--CC-CcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhc
Q 037816          193 VGNALITSYFKCGSSSSGRKVFGEMR--VR-NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG  269 (648)
Q Consensus       193 ~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~  269 (648)
                      .+..+...+.+.|++++|.++|+...  .| +...+..+...+...|++++|+..+++..+.  .|+...+..+..++..
T Consensus        51 ~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--~P~~~~~~~la~~l~~  128 (765)
T PRK10049         51 GYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG--APDKANLLALAYVYKR  128 (765)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence            34444444444445555544444432  11 2233444444455555555555555555432  1221114444444445


Q ss_pred             cCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCcc--------cHHHHHHHHH-----Hc
Q 037816          270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGV--------SMTVILVGFA-----QN  336 (648)
Q Consensus       270 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~li~~~~-----~~  336 (648)
                      .|+.++|...++.+.+.. +.+...+..+..++...+..+.|.+.++.... ++.        ....++....     ..
T Consensus       129 ~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~  206 (765)
T PRK10049        129 AGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEK  206 (765)
T ss_pred             CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChh
Confidence            555555555555554442 22333334455555566666666666665544 111        1111111111     11


Q ss_pred             CCH---HHHHHHHHHHHHc-CCCcCHH-HHH----HHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC
Q 037816          337 GFE---EEAMQLFVKMVKA-GIEIDPN-MVS----AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCG  407 (648)
Q Consensus       337 ~~~---~~a~~~~~~m~~~-~~~p~~~-~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  407 (648)
                      +++   ++|+..++.+.+. ...|+.. .+.    ..+.++...|++++|...|+.+.+.+.+........+..+|...|
T Consensus       207 ~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g  286 (765)
T PRK10049        207 ERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLH  286 (765)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcC
Confidence            223   5677777777643 1122221 111    112334455677777777777766542211112222455677777


Q ss_pred             CHHHHHHHHhhcCCCC-------hhHHHHHHHHHHHcCChHHHHHHHHHHHHcC-----------CCCCH---HHHHHHH
Q 037816          408 DLEDSIKVFSRMAPRN-------SVSWNSMIAAFARHGNGFKALELYEEMKLEG-----------VEPTD---VTFLSLL  466 (648)
Q Consensus       408 ~~~~A~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~-----------~~p~~---~~~~~ll  466 (648)
                      ++++|+..|+++...+       ......+..++...|++++|...++++.+..           -.|+.   ..+..+.
T Consensus       287 ~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a  366 (765)
T PRK10049        287 QPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLS  366 (765)
T ss_pred             CcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHH
Confidence            7777777777654221       1234445556667777777777777776542           01221   2334455


Q ss_pred             HHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChH
Q 037816          467 HACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPD-VLVWQALLGACSIHGDSE  544 (648)
Q Consensus       467 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~  544 (648)
                      ..+...|++++|++.++++..  ..+.+...+..+...+...|++++|++.+++. ...|+ ...+...+..+...|+++
T Consensus       367 ~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~  444 (765)
T PRK10049        367 QVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWR  444 (765)
T ss_pred             HHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHH
Confidence            566667777777777777765  23446666777777777777777777777766 44554 444555555666777777


Q ss_pred             HHHHHHHHHHhcCCCCCc
Q 037816          545 MGKYAAEKLFLAQPDSPA  562 (648)
Q Consensus       545 ~A~~~~~~~~~~~p~~~~  562 (648)
                      +|+..++++++..|+++.
T Consensus       445 ~A~~~~~~ll~~~Pd~~~  462 (765)
T PRK10049        445 QMDVLTDDVVAREPQDPG  462 (765)
T ss_pred             HHHHHHHHHHHhCCCCHH
Confidence            777777777777777653

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.83  E-value=1.1e-17  Score=170.97  Aligned_cols=290  Identities=15%  Similarity=0.148  Sum_probs=195.2

Q ss_pred             HHHHHHCCCchHHHHHHHHHHhCCCCCC-hhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCc---hhHHHHHHHHHHh
Q 037816          229 ISGLVQNQLYEEGLKLFVKMHLGLINPN-SLTYLSSVMACSGLQALCEGRQIHGILWKLALQSD---LCIESALMDMYSK  304 (648)
Q Consensus       229 i~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~  304 (648)
                      ...+...|++++|+..|+++.+.+  |+ ..++..+...+...|++++|..+++.+...+..++   ...+..+      
T Consensus        42 g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~L------  113 (389)
T PRK11788         42 GLNFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQEL------  113 (389)
T ss_pred             HHHHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHH------
Confidence            344566778888888888887642  33 33555555666666666666666666554321111   1233444      


Q ss_pred             cCCHHHHHHHHHhccCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHH
Q 037816          305 CGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI  384 (648)
Q Consensus       305 ~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~  384 (648)
                                               ...|...|++++|..+|+++.+.. +++..++..++..+...|++++|.+.++.+
T Consensus       114 -------------------------a~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  167 (389)
T PRK11788        114 -------------------------GQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERL  167 (389)
T ss_pred             -------------------------HHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence                                     444455555555555555554431 233444555555555555555555555555


Q ss_pred             HHhCCCCc----hhHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 037816          385 IKSDFTSN----PFVNNGLINMYSKCGDLEDSIKVFSRMAP---RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP  457 (648)
Q Consensus       385 ~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p  457 (648)
                      .+.+..+.    ...+..+...+.+.|++++|...|+++.+   .+...+..+...+.+.|++++|.++++++.+.+...
T Consensus       168 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~  247 (389)
T PRK11788        168 EKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEY  247 (389)
T ss_pred             HHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence            54332211    12344566677788888888888887653   245577778888999999999999999998754222


Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 037816          458 TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPDVLVWQALLGA  536 (648)
Q Consensus       458 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~  536 (648)
                      ...++..++.+|...|++++|...++++.+.   .|+...+..++..+.+.|++++|.++++++ ...|+..+++.++..
T Consensus       248 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~  324 (389)
T PRK11788        248 LSEVLPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDY  324 (389)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence            2456788889999999999999999999764   566677788999999999999999999887 667999899888877


Q ss_pred             HHH---cCChHHHHHHHHHHHh
Q 037816          537 CSI---HGDSEMGKYAAEKLFL  555 (648)
Q Consensus       537 ~~~---~g~~~~A~~~~~~~~~  555 (648)
                      +..   .|+.++++..++++++
T Consensus       325 ~~~~~~~g~~~~a~~~~~~~~~  346 (389)
T PRK11788        325 HLAEAEEGRAKESLLLLRDLVG  346 (389)
T ss_pred             hhhccCCccchhHHHHHHHHHH
Confidence            664   4588889988888875

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.82  E-value=1e-16  Score=171.72  Aligned_cols=352  Identities=11%  Similarity=-0.029  Sum_probs=278.3

Q ss_pred             HHCCCchHHHHHHHHHHhC--CCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHH
Q 037816          233 VQNQLYEEGLKLFVKMHLG--LINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVED  310 (648)
Q Consensus       233 ~~~g~~~~a~~~~~~m~~~--~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  310 (648)
                      .+..+|+.---.|....++  .-..+......++..+.+.|+++.|..+++..+.....+ ......++.+....|++++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~   94 (656)
T PRK15174         16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDA   94 (656)
T ss_pred             hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHH
Confidence            3455555544444443221  111233445667788889999999999999998876443 4445556677778999999


Q ss_pred             HHHHHHhccCC---CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHh
Q 037816          311 AWQIFEFAEEL---DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS  387 (648)
Q Consensus       311 A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  387 (648)
                      |...|+.+...   +...+..+...+...|++++|...+++..... +.+...+..+...+...|+.++|...++.+...
T Consensus        95 A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~  173 (656)
T PRK15174         95 VLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQE  173 (656)
T ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence            99999998763   45567788889999999999999999998863 445677888889999999999999999988766


Q ss_pred             CCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 037816          388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR----NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFL  463 (648)
Q Consensus       388 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~  463 (648)
                      .. .+...+..+ ..+...|++++|...++.+.+.    +...+..+..++...|++++|+..+++..+.. +.+...+.
T Consensus       174 ~P-~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~  250 (656)
T PRK15174        174 VP-PRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRR  250 (656)
T ss_pred             CC-CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence            53 333344333 3478899999999999987542    33344556778899999999999999999864 33567788


Q ss_pred             HHHHHHhccCcHHH----HHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHH
Q 037816          464 SLLHACSHVGLVNK----GMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPD-VLVWQALLGAC  537 (648)
Q Consensus       464 ~ll~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~  537 (648)
                      .+...+...|++++    |...++++.+.  .+.+...+..+...+.+.|++++|...+++. ...|+ ...+..+..++
T Consensus       251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l  328 (656)
T PRK15174        251 SLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARAL  328 (656)
T ss_pred             HHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            88899999999986    89999999873  3347789999999999999999999999998 55565 56677788899


Q ss_pred             HHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037816          538 SIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMG  591 (648)
Q Consensus       538 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  591 (648)
                      ...|++++|+..++++.+..|.+...+..++.++...|++++|+..+++..+..
T Consensus       329 ~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~  382 (656)
T PRK15174        329 RQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR  382 (656)
T ss_pred             HHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            999999999999999999999987777778899999999999999999998754

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.82  E-value=2.7e-16  Score=160.86  Aligned_cols=517  Identities=10%  Similarity=0.037  Sum_probs=276.1

Q ss_pred             CCCcchhHHHHHHhhhcCCCCCcCcCCCCChHHHHHHHHHHHhcCCChhHHHHhhccCCCCCcccHHHHHHHH---Hhc-
Q 037816           58 GHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGF---LRN-  133 (648)
Q Consensus        58 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~y~~li~~~---~~~-  133 (648)
                      +++..|..+|..++..-+..        +||+.+-  +..++.+.|+.+.|+..|....+-|+..-++++...   ... 
T Consensus       178 kdY~~al~yyk~al~inp~~--------~aD~rIg--ig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~  247 (1018)
T KOG2002|consen  178 KDYRGALKYYKKALRINPAC--------KADVRIG--IGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFN  247 (1018)
T ss_pred             ccHHHHHHHHHHHHhcCccc--------CCCccch--hhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHcc
Confidence            35555555555544443333        4444332  123444555555555555555443333322222111   111 


Q ss_pred             --CCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCC--ChhHHHHHHHHhHhcCChhH
Q 037816          134 --GEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEE--EVTVGNALITSYFKCGSSSS  209 (648)
Q Consensus       134 --g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~  209 (648)
                        ..+..+...+...-..+  |..+...+.|..-+.-.++...+..+...+.......  -...|--+.++|-..|++++
T Consensus       248 d~~s~~~~~~ll~~ay~~n--~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ek  325 (1018)
T KOG2002|consen  248 DSDSYKKGVQLLQRAYKEN--NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEK  325 (1018)
T ss_pred             chHHHHHHHHHHHHHHhhc--CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHH
Confidence              12233333333332222  3333344455555555555555555555555432111  11223445555555555555


Q ss_pred             HHHHhcccCC--CC--cccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccC----ChHHHHHHHH
Q 037816          210 GRKVFGEMRV--RN--VITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQ----ALCEGRQIHG  281 (648)
Q Consensus       210 A~~~~~~~~~--~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~----~~~~a~~~~~  281 (648)
                      |...|.+..+  ++  +..+--|...+.+.|+.+.+...|+...+. .+-+..|...+...|+..+    ..+.|..++.
T Consensus       326 A~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~  404 (1018)
T KOG2002|consen  326 AFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLG  404 (1018)
T ss_pred             HHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHH
Confidence            5555544432  11  222334455555555555555555555441 1122233333333333332    2333333333


Q ss_pred             HHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc--------CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHc-
Q 037816          282 ILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAE--------ELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKA-  352 (648)
Q Consensus       282 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-  352 (648)
                      ...+.- +.|...|..+...+...+-+ .++..|....        ...+...|.+...+...|++.+|...|...... 
T Consensus       405 K~~~~~-~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~  482 (1018)
T KOG2002|consen  405 KVLEQT-PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKL  482 (1018)
T ss_pred             HHHhcc-cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhh
Confidence            333322 33444444444444333222 2233332221        123444555555666666666666666655443 


Q ss_pred             --CCCcCH------HHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC---C
Q 037816          353 --GIEIDP------NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA---P  421 (648)
Q Consensus       353 --~~~p~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~  421 (648)
                        ...+|.      .+--.+....-..++.+.|.+.|..+.+.. |.-+..|-.+.......+...+|...+....   +
T Consensus       483 ~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~  561 (1018)
T KOG2002|consen  483 LEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS  561 (1018)
T ss_pred             hhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc
Confidence              111222      112223333344556666666666665543 1112222222222222345556666666554   3


Q ss_pred             CChhHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhc------------cCcHHHHHHHHHHhHHh
Q 037816          422 RNSVSWNSMIAAFARHGNGFKALELYEEMKLE-GVEPTDVTFLSLLHACSH------------VGLVNKGMEFLKSMTEV  488 (648)
Q Consensus       422 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~~~------------~g~~~~A~~~~~~~~~~  488 (648)
                      .++..+..+...+.+...+..|.+-|....+. ...+|..+...|.+.|..            .+..++|+++|.++.+ 
T Consensus       562 ~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~-  640 (1018)
T KOG2002|consen  562 SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR-  640 (1018)
T ss_pred             CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh-
Confidence            35566666666777777777777766555542 123566666666665432            2356788888888876 


Q ss_pred             cCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCCCccH
Q 037816          489 HRISPRAEHYACVVDMVGRAGLLIEARSFIERM--PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQ--PDSPAPY  564 (648)
Q Consensus       489 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~  564 (648)
                       .-+-|...-+-+.-.++..|++.+|..+|.+.  .......+|..+..+|...|++-.|++.|+...+..  .++..+.
T Consensus       641 -~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl  719 (1018)
T KOG2002|consen  641 -NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVL  719 (1018)
T ss_pred             -cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHH
Confidence             34458888888999999999999999999988  233356678889999999999999999999998654  3467788


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037816          565 ILMANIYSCSGRWKERAKAIKRMKEMGV  592 (648)
Q Consensus       565 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~  592 (648)
                      ..|+.++.+.|++.+|.+.+...+...+
T Consensus       720 ~~Lara~y~~~~~~eak~~ll~a~~~~p  747 (1018)
T KOG2002|consen  720 HYLARAWYEAGKLQEAKEALLKARHLAP  747 (1018)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence            8999999999999999999888777543

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.82  E-value=1.5e-16  Score=174.21  Aligned_cols=394  Identities=10%  Similarity=0.010  Sum_probs=299.4

Q ss_pred             CCChhHHHHHHHHhHhcCChhHHHHHhcccCC-C--CcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCC-hhhHHHH
Q 037816          188 EEEVTVGNALITSYFKCGSSSSGRKVFGEMRV-R--NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPN-SLTYLSS  263 (648)
Q Consensus       188 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~t~~~l  263 (648)
                      +.+.......+.+....|+.++|++++..... .  +...+..+...+...|++++|.++|++..+.  .|+ ......+
T Consensus        12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l   89 (765)
T PRK10049         12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGL   89 (765)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence            34555566777888899999999999998864 2  3345889999999999999999999998763  344 4556677


Q ss_pred             HHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCC---CcccHHHHHHHHHHcCCHH
Q 037816          264 VMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEEL---DGVSMTVILVGFAQNGFEE  340 (648)
Q Consensus       264 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~  340 (648)
                      ...+...|+.++|...++.+.+.. +.+.. +..+..++...|+.++|...++++.+.   +...+..+..++...+..+
T Consensus        90 a~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e  167 (765)
T PRK10049         90 ILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSA  167 (765)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChH
Confidence            788899999999999999998873 44555 888999999999999999999998763   3445566777888899999


Q ss_pred             HHHHHHHHHHHcCCCcCH------HHHHHHHHHHh-----ccCCh---hHHHHHHHHHHHh-CCCCchh-HHH----HHH
Q 037816          341 EAMQLFVKMVKAGIEIDP------NMVSAVLGVFG-----VDTSL---GLGKQIHSLIIKS-DFTSNPF-VNN----GLI  400 (648)
Q Consensus       341 ~a~~~~~~m~~~~~~p~~------~~~~~ll~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~~----~li  400 (648)
                      +|+..+++...   .|+.      ......+....     ..+++   +.|.+.++.+.+. ...|+.. .+.    ..+
T Consensus       168 ~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l  244 (765)
T PRK10049        168 PALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRL  244 (765)
T ss_pred             HHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHH
Confidence            99998886653   2321      11122222222     12233   6788888888754 2223221 111    113


Q ss_pred             HHHHhCCCHHHHHHHHhhcCCCC---h-hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHhc
Q 037816          401 NMYSKCGDLEDSIKVFSRMAPRN---S-VSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT-----DVTFLSLLHACSH  471 (648)
Q Consensus       401 ~~~~~~g~~~~A~~~~~~~~~~~---~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-----~~~~~~ll~~~~~  471 (648)
                      ..+...|++++|+..|+.+.+.+   + ..-..+..+|...|++++|+..|+++.+..  |.     ......+..++..
T Consensus       245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~--p~~~~~~~~~~~~L~~a~~~  322 (765)
T PRK10049        245 GALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHP--ETIADLSDEELADLFYSLLE  322 (765)
T ss_pred             HHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcC--CCCCCCChHHHHHHHHHHHh
Confidence            34567799999999999987532   1 122235678999999999999999988643  32     3456667778899


Q ss_pred             cCcHHHHHHHHHHhHHhcC----------CCCC---hhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 037816          472 VGLVNKGMEFLKSMTEVHR----------ISPR---AEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGA  536 (648)
Q Consensus       472 ~g~~~~A~~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~  536 (648)
                      .|++++|.++++.+.....          -.|+   ...+..+...+...|++++|+++++++ ...| +...+..+...
T Consensus       323 ~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l  402 (765)
T PRK10049        323 SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASV  402 (765)
T ss_pred             cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            9999999999999987310          0122   234567788999999999999999998 4444 46778888899


Q ss_pred             HHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816          537 CSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       537 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  590 (648)
                      +...|++++|++.++++++..|++...+...+..+...|++++|..+++++.+.
T Consensus       403 ~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~  456 (765)
T PRK10049        403 LQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR  456 (765)
T ss_pred             HHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999874

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.81  E-value=9.9e-16  Score=156.86  Aligned_cols=510  Identities=9%  Similarity=0.020  Sum_probs=362.4

Q ss_pred             CcchhHHHHHHhhhcCCCCCcCcCCCCChHHHHHHHHHH--HhcCCChhHHHHhhccCC--CC----CcccHHHHHHHHH
Q 037816           60 FHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSF--YLKCDQMRNAVKLFDDMP--MR----DTVSWNTMVSGFL  131 (648)
Q Consensus        60 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~--~~----~~~~y~~li~~~~  131 (648)
                      ++.|...|..+.+.            .|+... ..|..+  ....|++..|+..|....  .|    |+.  -.+..++.
T Consensus       146 ~~~A~a~F~~Vl~~------------sp~Nil-~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~  210 (1018)
T KOG2002|consen  146 MDDADAQFHFVLKQ------------SPDNIL-ALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFW  210 (1018)
T ss_pred             HHHHHHHHHHHHhh------------CCcchH-HHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHH
Confidence            47788888888777            444322 233444  445689999999999854  22    332  23345667


Q ss_pred             hcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCC---hHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChh
Q 037816          132 RNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSEL---SLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSS  208 (648)
Q Consensus       132 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  208 (648)
                      +.|+.+.|+..|.+..+.+  |+...++..|--.-....+   ...+..++....... ..++.+.+.|...|.-.|+++
T Consensus       211 kl~~~~~a~~a~~ralqLd--p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~  287 (1018)
T KOG2002|consen  211 KLGMSEKALLAFERALQLD--PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYE  287 (1018)
T ss_pred             hccchhhHHHHHHHHHhcC--hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHH
Confidence            8999999999999999876  6555344444433333333   334444444444333 567788899999999999999


Q ss_pred             HHHHHhcccCCCC------cccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChh--hHHHHHHHhhccCChHHHHHHH
Q 037816          209 SGRKVFGEMRVRN------VITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSL--TYLSSVMACSGLQALCEGRQIH  280 (648)
Q Consensus       209 ~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--t~~~ll~~~~~~~~~~~a~~~~  280 (648)
                      .+..+...+...+      ...|-.+.++|-..|++++|...|.+..+  ..||..  .+..+...+...|+++.+...|
T Consensus       288 ~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k--~~~d~~~l~~~GlgQm~i~~~dle~s~~~f  365 (1018)
T KOG2002|consen  288 RVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLK--ADNDNFVLPLVGLGQMYIKRGDLEESKFCF  365 (1018)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc--cCCCCccccccchhHHHHHhchHHHHHHHH
Confidence            9999988876432      23577788999999999999999988765  345553  4456777889999999999999


Q ss_pred             HHHHHhcCCCchhHHHHHHHHHHhcC----CHHHHHHHHHhccCCC---cccHHHHHHHHHHcCCHHHHHHHHHHHH---
Q 037816          281 GILWKLALQSDLCIESALMDMYSKCG----SVEDAWQIFEFAEELD---GVSMTVILVGFAQNGFEEEAMQLFVKMV---  350 (648)
Q Consensus       281 ~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~---  350 (648)
                      +.+.+.. +.+..+...|...|...+    ..+.|..++.+..++.   ...|-.+...+-. ++...++..|....   
T Consensus       366 Ekv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L  443 (1018)
T KOG2002|consen  366 EKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ-TDPWASLDAYGNALDIL  443 (1018)
T ss_pred             HHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHH
Confidence            9998874 556667777888887775    5677888887777654   4445445454444 44444477776554   


Q ss_pred             -HcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHh---CCCCch------hHHHHHHHHHHhCCCHHHHHHHHhhcC
Q 037816          351 -KAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS---DFTSNP------FVNNGLINMYSKCGDLEDSIKVFSRMA  420 (648)
Q Consensus       351 -~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~~~  420 (648)
                       ..+-.+.+...+.+...+...|++..|...|......   ...++.      .+--.+..++-..++++.|.+.|..+.
T Consensus       444 ~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Il  523 (1018)
T KOG2002|consen  444 ESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSIL  523 (1018)
T ss_pred             HHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence             4555678888999999999999999999999888755   112222      222335566667789999999999887


Q ss_pred             CCC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhH
Q 037816          421 PRN---SVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEH  497 (648)
Q Consensus       421 ~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  497 (648)
                      +..   +..|-.+.......+...+|...+.+....+ ..++..+..+...+.....+..|..-|....+.....+|+..
T Consensus       524 kehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Ys  602 (1018)
T KOG2002|consen  524 KEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYS  602 (1018)
T ss_pred             HHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhH
Confidence            532   3344444433334577889999999888643 344555555666788888888888877777664344456666


Q ss_pred             HHHHHHHhhh------------cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcc
Q 037816          498 YACVVDMVGR------------AGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP  563 (648)
Q Consensus       498 ~~~l~~~~~~------------~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  563 (648)
                      .-.|.+.|..            .+..++|+++|.++ ...| |...-+-+.-.++..|++..|..+|.++.+...+.+.+
T Consensus       603 liaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv  682 (1018)
T KOG2002|consen  603 LIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDV  682 (1018)
T ss_pred             HHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCce
Confidence            6666665432            24577899998887 4444 56777778888899999999999999999887788899


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037816          564 YILMANIYSCSGRWKERAKAIKRMKEMGV  592 (648)
Q Consensus       564 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~  592 (648)
                      |..++.+|..+|+|..|++.|+...+.-.
T Consensus       683 ~lNlah~~~e~~qy~~AIqmYe~~lkkf~  711 (1018)
T KOG2002|consen  683 WLNLAHCYVEQGQYRLAIQMYENCLKKFY  711 (1018)
T ss_pred             eeeHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999776544

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.80  E-value=3.9e-15  Score=159.69  Aligned_cols=438  Identities=8%  Similarity=0.013  Sum_probs=275.3

Q ss_pred             HHHhcCCChhHHHHhhccCCCCCcc---cHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHH--HHHHhhccCC
Q 037816           97 SFYLKCDQMRNAVKLFDDMPMRDTV---SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTI--ILSACDRSEL  171 (648)
Q Consensus        97 ~~~~~~g~~~~A~~~~~~~~~~~~~---~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~--ll~~~~~~~~  171 (648)
                      -...+.|+++.|+..|++..+.++.   .-..++..+...|+.++|+..+++...    |.....+..  +...+...|+
T Consensus        42 ii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~----p~n~~~~~llalA~ly~~~gd  117 (822)
T PRK14574         42 IIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS----SMNISSRGLASAARAYRNEKR  117 (822)
T ss_pred             HHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc----CCCCCHHHHHHHHHHHHHcCC
Confidence            3455667777777777776632221   122666666667777777777777661    222212222  2445666677


Q ss_pred             hHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccCCCCc--ccHHHHHHHHHHCCCchHHHHHHHHHH
Q 037816          172 SLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNV--ITWTAVISGLVQNQLYEEGLKLFVKMH  249 (648)
Q Consensus       172 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~  249 (648)
                      ++.|..+++.+.+.. +.+...+..++..+...++.++|++.++.+...+.  ..+..++..+...++..+|++.++++.
T Consensus       118 yd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll  196 (822)
T PRK14574        118 WDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAV  196 (822)
T ss_pred             HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            777777777776654 33455555666666666777777776666654332  223222222222444444666666665


Q ss_pred             hCCCCCC-hhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHH
Q 037816          250 LGLINPN-SLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV  328 (648)
Q Consensus       250 ~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  328 (648)
                      +.  .|+ ...+..+..++.+.|-...|.++...-      |+..+-......     +.+.|-+..+....++.     
T Consensus       197 ~~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~l-----~~~~~a~~vr~a~~~~~-----  258 (822)
T PRK14574        197 RL--APTSEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQL-----ERDAAAEQVRMAVLPTR-----  258 (822)
T ss_pred             Hh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHHH-----HHHHHHHHHhhcccccc-----
Confidence            53  233 334445555555555555555444331      111110000000     01111111111110000     


Q ss_pred             HHHHHHHcC---CHHHHHHHHHHHHHc-CCCcC-HH----HHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHH
Q 037816          329 ILVGFAQNG---FEEEAMQLFVKMVKA-GIEID-PN----MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGL  399 (648)
Q Consensus       329 li~~~~~~~---~~~~a~~~~~~m~~~-~~~p~-~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  399 (648)
                           ....   -.+.|+.-++.+... +..|. ..    ...-.+-++...++..++...++.+...+.+....+-.++
T Consensus       259 -----~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~  333 (822)
T PRK14574        259 -----SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWA  333 (822)
T ss_pred             -----cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHH
Confidence                 0111   234566666665542 11232 22    2234456777889999999999999988877777888999


Q ss_pred             HHHHHhCCCHHHHHHHHhhcCCC---------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-----------CC--
Q 037816          400 INMYSKCGDLEDSIKVFSRMAPR---------NSVSWNSMIAAFARHGNGFKALELYEEMKLEGV-----------EP--  457 (648)
Q Consensus       400 i~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-----------~p--  457 (648)
                      .++|...+++++|+.+|..+..+         +......|.-+|...+++++|..+++++.+.-.           .|  
T Consensus       334 adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~  413 (822)
T PRK14574        334 ASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPND  413 (822)
T ss_pred             HHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCc
Confidence            99999999999999999987432         233356788899999999999999999987321           12  


Q ss_pred             CHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHH
Q 037816          458 TDV-TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPD-VLVWQALL  534 (648)
Q Consensus       458 ~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~  534 (648)
                      |-. .+..++..+...|++.+|++.++++..  .-+-|......+.+.+...|.+.+|++.++.. .+.|+ ..+....+
T Consensus       414 d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~  491 (822)
T PRK14574        414 DWIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQA  491 (822)
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHH
Confidence            222 234456778899999999999999976  34559999999999999999999999999877 55665 55566777


Q ss_pred             HHHHHcCChHHHHHHHHHHHhcCCCCCccH
Q 037816          535 GACSIHGDSEMGKYAAEKLFLAQPDSPAPY  564 (648)
Q Consensus       535 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  564 (648)
                      .++...+++.+|..+.+.+.+..|+++.+-
T Consensus       492 ~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~  521 (822)
T PRK14574        492 ETAMALQEWHQMELLTDDVISRSPEDIPSQ  521 (822)
T ss_pred             HHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence            888899999999999999999999997443

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.79  E-value=1.5e-14  Score=134.93  Aligned_cols=427  Identities=14%  Similarity=0.113  Sum_probs=292.6

Q ss_pred             cccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhh---ccCChHHHHHHHHHHHHhCCCCChhHHHH
Q 037816          120 TVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACD---RSELSLVSKMIHCLVYLCGYEEEVTVGNA  196 (648)
Q Consensus       120 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  196 (648)
                      +.+=|.|+. ...+|....+.-+|+.|...|+..... .-..|++..+   ..+-.-.-.+.|-.|.+.| +.+..+|  
T Consensus       116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~k-vq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--  190 (625)
T KOG4422|consen  116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEK-VQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--  190 (625)
T ss_pred             hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHH-HHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--
Confidence            445566665 366889999999999999998755555 5555555422   2222212222333344334 2333333  


Q ss_pred             HHHHhHhcCChhHHHHHhcccCCCCcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHH
Q 037816          197 LITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEG  276 (648)
Q Consensus       197 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a  276 (648)
                            +.|++.+   ++-+.......+|.+||.++|+--..+.|.++|++-.....+.+..+||.+|.+.+-..    .
T Consensus       191 ------K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~  257 (625)
T KOG4422|consen  191 ------KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----G  257 (625)
T ss_pred             ------ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----c
Confidence                  3454433   44455555668999999999999999999999999998889999999999998765433    3


Q ss_pred             HHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Q 037816          277 RQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEI  356 (648)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p  356 (648)
                      .++..+|....+.||..|+|+++.+..+.|+++.|.                           ..|++++.+|++.|+.|
T Consensus       258 K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar---------------------------~aalqil~EmKeiGVeP  310 (625)
T KOG4422|consen  258 KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDAR---------------------------KAALQILGEMKEIGVEP  310 (625)
T ss_pred             HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHH---------------------------HHHHHHHHHHHHhCCCc
Confidence            889999999999999999999999999999988775                           35677788888888888


Q ss_pred             CHHHHHHHHHHHhccCChhH-HHHHHHHHHH----hCC----CCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC------
Q 037816          357 DPNMVSAVLGVFGVDTSLGL-GKQIHSLIIK----SDF----TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP------  421 (648)
Q Consensus       357 ~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~----~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------  421 (648)
                      ...+|..+|..+++.++..+ +..+..++..    ..+    +.+...+..-+..|.+..+.+-|.++-.-+..      
T Consensus       311 sLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~  390 (625)
T KOG4422|consen  311 SLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKF  390 (625)
T ss_pred             chhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhh
Confidence            88888888888888877654 3333333332    222    23445566667777788888877777655442      


Q ss_pred             --C---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChh
Q 037816          422 --R---NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAE  496 (648)
Q Consensus       422 --~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  496 (648)
                        +   ...-|..+....|.....+.-+..|+.|.-+-.-|+..+...++++....|.++-.-+++..++. +|...+..
T Consensus       391 ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~-~ght~r~~  469 (625)
T KOG4422|consen  391 IGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKE-YGHTFRSD  469 (625)
T ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHH-hhhhhhHH
Confidence              1   22345666777777888888888888888776778888888888888888888888888888777 36555555


Q ss_pred             HHHHHHHHhhhcC-CH--------HH-----HHHHHH-------hC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 037816          497 HYACVVDMVGRAG-LL--------IE-----ARSFIE-------RM-PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLF  554 (648)
Q Consensus       497 ~~~~l~~~~~~~g-~~--------~~-----A~~~~~-------~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  554 (648)
                      ...-+...+++.+ +.        ..     |..+++       ++ ..+-.....+.++-.+.+.|..++|.+++.-..
T Consensus       470 l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~  549 (625)
T KOG4422|consen  470 LREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFL  549 (625)
T ss_pred             HHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHH
Confidence            5544555555443 11        11     111111       11 223345566777777889999999999988886


Q ss_pred             hcC---CCCC--ccHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037816          555 LAQ---PDSP--APYILMANIYSCSGRWKERAKAIKRMKEMGV  592 (648)
Q Consensus       555 ~~~---p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~  592 (648)
                      +..   |..+  .+..-+.+.-...+....|+..++-|...+.
T Consensus       550 ~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~  592 (625)
T KOG4422|consen  550 RKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL  592 (625)
T ss_pred             hcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence            533   3332  2233455566677888899999998876553

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.78  E-value=2.2e-14  Score=154.04  Aligned_cols=450  Identities=10%  Similarity=0.009  Sum_probs=316.4

Q ss_pred             CcchHHHHHHHHhccCCCcchhHHHHHHhhhcCCCCCcCcCCCCChH--HHHHHHHHHHhcCCChhHHHHhhccCCCCCc
Q 037816           43 NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNAT--VIWNSLLSFYLKCDQMRNAVKLFDDMPMRDT  120 (648)
Q Consensus        43 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~  120 (648)
                      .+.+...-+-...+.|++..|...+++..+.            .|+.  .++ .++..+...|+.++|+..+++...|+.
T Consensus        33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~------------~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n   99 (822)
T PRK14574         33 MADTQYDSLIIRARAGDTAPVLDYLQEESKA------------GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMN   99 (822)
T ss_pred             chhHHHHHHHHHHhCCCHHHHHHHHHHHHhh------------CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCC
Confidence            3344444445567899999999999999988            5653  355 888889999999999999999987644


Q ss_pred             c-cHHHH--HHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHH
Q 037816          121 V-SWNTM--VSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNAL  197 (648)
Q Consensus       121 ~-~y~~l--i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  197 (648)
                      . .+..+  ...+...|++++|+++|+++.+..  |++...+..++..+...++.++|...++.+.+.  .|+...+..+
T Consensus       100 ~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~l  175 (822)
T PRK14574        100 ISSRGLASAARAYRNEKRWDQALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTL  175 (822)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHH
Confidence            4 44444  447788899999999999999876  777667888888899999999999999998875  4555555555


Q ss_pred             HHHhHhcCChhHHHHHhcccCC--C-CcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChH
Q 037816          198 ITSYFKCGSSSSGRKVFGEMRV--R-NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALC  274 (648)
Q Consensus       198 i~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~  274 (648)
                      +..+...++..+|++.++++..  | +...+..+..++.+.|-...|+++.++-      |+..+-......     ..+
T Consensus       176 ayL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~l-----~~~  244 (822)
T PRK14574        176 SYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQL-----ERD  244 (822)
T ss_pred             HHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHHH-----HHH
Confidence            5555556667669999999873  4 4566788889999999999999887764      333222111110     000


Q ss_pred             HHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC-----CCcc-c----HHHHHHHHHHcCCHHHHHH
Q 037816          275 EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE-----LDGV-S----MTVILVGFAQNGFEEEAMQ  344 (648)
Q Consensus       275 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~-~----~~~li~~~~~~~~~~~a~~  344 (648)
                      .+    .+.++.+..++..- .   .   +..-.+.|+.-++.+..     |... .    .--.+-++...++..++++
T Consensus       245 ~~----a~~vr~a~~~~~~~-~---~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~  313 (822)
T PRK14574        245 AA----AEQVRMAVLPTRSE-T---E---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIK  313 (822)
T ss_pred             HH----HHHHhhcccccccc-h---h---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            01    11111111111000 0   0   00012233333333222     1111 1    1124556778888899999


Q ss_pred             HHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhC-----CCCchhHHHHHHHHHHhCCCHHHHHHHHhhc
Q 037816          345 LFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD-----FTSNPFVNNGLINMYSKCGDLEDSIKVFSRM  419 (648)
Q Consensus       345 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~  419 (648)
                      .|+.+...+.+....+-..+..+|...+++++|..+++.+....     .+++......|..+|...+++++|..+++.+
T Consensus       314 ~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~  393 (822)
T PRK14574        314 EYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNY  393 (822)
T ss_pred             HHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            99999888866566688888888999999999999998886543     2334444678888999999999999999887


Q ss_pred             CC--C-------------C---hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 037816          420 AP--R-------------N---SVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF  481 (648)
Q Consensus       420 ~~--~-------------~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~  481 (648)
                      .+  |             |   ...+..++..+...|+..+|++.++++.... +-|......+...+...|.+.+|.+.
T Consensus       394 ~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~  472 (822)
T PRK14574        394 SEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQE  472 (822)
T ss_pred             HhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence            63  1             1   1234456778889999999999999998854 44788888899999999999999999


Q ss_pred             HHHhHHhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 037816          482 LKSMTEVHRISP-RAEHYACVVDMVGRAGLLIEARSFIERM-PVKPDVLVWQALLG  535 (648)
Q Consensus       482 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~  535 (648)
                      ++....   ..| +..+....+..+...|++.+|..+.+.. ...|+......|-+
T Consensus       473 ~k~a~~---l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~l~r  525 (822)
T PRK14574        473 LKAVES---LAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQELDR  525 (822)
T ss_pred             HHHHhh---hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHHHHHH
Confidence            977754   355 6777888899999999999999998777 44565554444433

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.77  E-value=6.9e-14  Score=142.64  Aligned_cols=542  Identities=11%  Similarity=0.068  Sum_probs=379.1

Q ss_pred             cCCCCcCCCcchHHHHHHHHhccCCCcchhHHHHHHhhhcCCCCCcCcCCCCChHHHHHHHHHHHhcCCChhHHHHhhcc
Q 037816           35 STSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDD  114 (648)
Q Consensus        35 ~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  114 (648)
                      ....++| .........+.+...|++++|..++.++++.   -        |.....|..|...|-..|+.+++...+-.
T Consensus       131 ~~~~l~~-~l~~ll~eAN~lfarg~~eeA~~i~~EvIkq---d--------p~~~~ay~tL~~IyEqrGd~eK~l~~~ll  198 (895)
T KOG2076|consen  131 GKSKLAP-ELRQLLGEANNLFARGDLEEAEEILMEVIKQ---D--------PRNPIAYYTLGEIYEQRGDIEKALNFWLL  198 (895)
T ss_pred             cccccCH-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---C--------ccchhhHHHHHHHHHHcccHHHHHHHHHH
Confidence            3334555 4555566666666669999999999999998   2        66788999999999999999999887644


Q ss_pred             C---CCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCCh
Q 037816          115 M---PMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEV  191 (648)
Q Consensus       115 ~---~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~  191 (648)
                      .   .+.|...|-.+..-..+.|++.+|.-.|.+.++..  |+....+-.-...|.+.|+...|..-+..+.....+.|.
T Consensus       199 AAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~  276 (895)
T KOG2076|consen  199 AAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDI  276 (895)
T ss_pred             HHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhH
Confidence            3   35577889999999999999999999999999876  666657777788899999999999999999886543333


Q ss_pred             hHHH----HHHHHhHhcCChhHHHHHhcccCC-----CCcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCC-------
Q 037816          192 TVGN----ALITSYFKCGSSSSGRKVFGEMRV-----RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINP-------  255 (648)
Q Consensus       192 ~~~~----~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-------  255 (648)
                      .-..    ..++.+...++-+.|.+.++....     -+...++.++..+.+...++.|......+......+       
T Consensus       277 er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~  356 (895)
T KOG2076|consen  277 ERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDT  356 (895)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhh
Confidence            3333    335556667777889888887753     245578999999999999999999988886621111       


Q ss_pred             ---------------ChhhHH----HHHHHhhccCChHHHHHHHHHHHHhcC--CCchhHHHHHHHHHHhcCCHHHHHHH
Q 037816          256 ---------------NSLTYL----SSVMACSGLQALCEGRQIHGILWKLAL--QSDLCIESALMDMYSKCGSVEDAWQI  314 (648)
Q Consensus       256 ---------------~~~t~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~  314 (648)
                                     +...|.    -+.-++......+....+...+.....  .-+...|.-+..+|...|++.+|+++
T Consensus       357 ~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~  436 (895)
T KOG2076|consen  357 DERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRL  436 (895)
T ss_pred             hhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHH
Confidence                           111221    223344556666667777777777764  44566888999999999999999999


Q ss_pred             HHhccC----CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHH-----
Q 037816          315 FEFAEE----LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII-----  385 (648)
Q Consensus       315 ~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-----  385 (648)
                      |..+..    .+...|-.+..+|...|.+++|.+.|++..... +-+...-..|-..+.+.|+.++|.+.+..+.     
T Consensus       437 l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~  515 (895)
T KOG2076|consen  437 LSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGR  515 (895)
T ss_pred             HHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCcc
Confidence            999876    356688899999999999999999999998753 3344555666677788999999999988843     


Q ss_pred             ---HhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC--------------C--------------------------C
Q 037816          386 ---KSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA--------------P--------------------------R  422 (648)
Q Consensus       386 ---~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--------------~--------------------------~  422 (648)
                         ..+..|.....-.....+...|+.++-..+-..|.              +                          +
T Consensus       516 ~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k  595 (895)
T KOG2076|consen  516 NAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREK  595 (895)
T ss_pred             chhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhc
Confidence               34456666666666667777777765443322211              0                          0


Q ss_pred             ------------C-------------h----hHHHHHHHHHHHcCChHHHHHHHHHHHHcCC--CCCH---HHHHHHHHH
Q 037816          423 ------------N-------------S----VSWNSMIAAFARHGNGFKALELYEEMKLEGV--EPTD---VTFLSLLHA  468 (648)
Q Consensus       423 ------------~-------------~----~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~--~p~~---~~~~~ll~~  468 (648)
                                  +             .    ..+.-++.++++.+++++|+.+...+.....  .++.   ..-...+.+
T Consensus       596 ~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~  675 (895)
T KOG2076|consen  596 ATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKA  675 (895)
T ss_pred             cCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHH
Confidence                        0             0    1134467788899999999999988876432  1222   122345566


Q ss_pred             HhccCcHHHHHHHHHHhHHhcCCCC---ChhHHHHHHHH-----------------------------------hhhcCC
Q 037816          469 CSHVGLVNKGMEFLKSMTEVHRISP---RAEHYACVVDM-----------------------------------VGRAGL  510 (648)
Q Consensus       469 ~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~l~~~-----------------------------------~~~~g~  510 (648)
                      ++..+++..|...++.+...++...   -...|+.....                                   +..++.
T Consensus       676 s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s  755 (895)
T KOG2076|consen  676 SLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNAS  755 (895)
T ss_pred             HHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccc
Confidence            7888999999999998877533322   22333322222                                   223355


Q ss_pred             HHHHHHHHHhC-CCCCCHHHHHHHHH-HHH----------HcCChHHHHHHHHHHHhcCCC--CCccHHHHHHHHHhcCC
Q 037816          511 LIEARSFIERM-PVKPDVLVWQALLG-ACS----------IHGDSEMGKYAAEKLFLAQPD--SPAPYILMANIYSCSGR  576 (648)
Q Consensus       511 ~~~A~~~~~~~-~~~p~~~~~~~l~~-~~~----------~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~  576 (648)
                      +.-|+..+-+. ...||....+.++. ++.          ++-..-+++.++++..++...  ...+++.++++|-..|-
T Consensus       756 ~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl  835 (895)
T KOG2076|consen  756 FKHALQEYMRAFRQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGL  835 (895)
T ss_pred             hHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHccc
Confidence            56666655544 34455333333332 111          122345566666666655433  56789999999999999


Q ss_pred             hHHHHHHHHHHHhCC
Q 037816          577 WKERAKAIKRMKEMG  591 (648)
Q Consensus       577 ~~~A~~~~~~m~~~~  591 (648)
                      ..-|+.+|++.+.-.
T Consensus       836 ~~LA~~YYekvL~~~  850 (895)
T KOG2076|consen  836 VHLAVSYYEKVLEVS  850 (895)
T ss_pred             HHHHHHHHHHHhCCC
Confidence            999999999998754

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.76  E-value=1.2e-14  Score=135.38  Aligned_cols=419  Identities=12%  Similarity=0.072  Sum_probs=238.7

Q ss_pred             hHHHHHHHHhccCCCcchhHHHHHHhhhcCCCCCcCcCCCCChHHHHHHHHHH--HhcCCChhHH-HHhhccCC------
Q 037816           46 DISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSF--YLKCDQMRNA-VKLFDDMP------  116 (648)
Q Consensus        46 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A-~~~~~~~~------  116 (648)
                      +=+.+++. ..+|.+.++.-+|+.|...  |.        +.+..+-..|.+.  |..+.++--| ++.|-.|.      
T Consensus       118 ~E~nL~km-IS~~EvKDs~ilY~~m~~e--~~--------~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S  186 (625)
T KOG4422|consen  118 TENNLLKM-ISSREVKDSCILYERMRSE--NV--------DVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDS  186 (625)
T ss_pred             chhHHHHH-HhhcccchhHHHHHHHHhc--CC--------CCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccc
Confidence            34444443 4466777888888888777  66        5555555555442  2222222211 22222222      


Q ss_pred             -----------------CCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHH
Q 037816          117 -----------------MRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIH  179 (648)
Q Consensus       117 -----------------~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~  179 (648)
                                       .+...+|..+|.++|+--..+.|.++|++..+...+.+.. +|+.+|.+-.-..    .+.+.
T Consensus       187 ~~sWK~G~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~-aFN~lI~~~S~~~----~K~Lv  261 (625)
T KOG4422|consen  187 TSSWKSGAVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYRE-AFNGLIGASSYSV----GKKLV  261 (625)
T ss_pred             ccccccccHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHH-hhhhhhhHHHhhc----cHHHH
Confidence                             2344566666666666666666666666666655555555 6666666533221    15566


Q ss_pred             HHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccCCCCcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhh
Q 037816          180 CLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLT  259 (648)
Q Consensus       180 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t  259 (648)
                      .+|......||..|+|+++++..+.|+++.|.                           ..|++++.+|++.|+.|...+
T Consensus       262 ~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar---------------------------~aalqil~EmKeiGVePsLsS  314 (625)
T KOG4422|consen  262 AEMISQKMTPNLFTFNALLSCAAKFGKFEDAR---------------------------KAALQILGEMKEIGVEPSLSS  314 (625)
T ss_pred             HHHHHhhcCCchHhHHHHHHHHHHhcchHHHH---------------------------HHHHHHHHHHHHhCCCcchhh
Confidence            66666666666666666666666666555443                           234566777777778887777


Q ss_pred             HHHHHHHhhccCChHH-HHHHHHHHHHh--c--C----CCchhHHHHHHHHHHhcCCHHHHHHHHHhccCC---------
Q 037816          260 YLSSVMACSGLQALCE-GRQIHGILWKL--A--L----QSDLCIESALMDMYSKCGSVEDAWQIFEFAEEL---------  321 (648)
Q Consensus       260 ~~~ll~~~~~~~~~~~-a~~~~~~~~~~--~--~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------  321 (648)
                      |..+|..+.+.++..+ +..++.++...  |  +    +.|...+..-+..|.+..+.+-|.++-.-+...         
T Consensus       315 yh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~  394 (625)
T KOG4422|consen  315 YHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPD  394 (625)
T ss_pred             HHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChH
Confidence            7777777776666543 33444444321  2  2    223445566666777777777777665544331         


Q ss_pred             --CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHH
Q 037816          322 --DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGL  399 (648)
Q Consensus       322 --~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  399 (648)
                        ...-|..+....++....+.-+..|+.|+-.-+-|+..+...++++....+.++-..++|..++..|...+.....-+
T Consensus       395 ~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eei  474 (625)
T KOG4422|consen  395 QHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEI  474 (625)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHH
Confidence              122355677777888888999999999988888899999999999999999999999999999988855544444444


Q ss_pred             HHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHc-CChHHH-HHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHH
Q 037816          400 INMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARH-GNGFKA-LELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNK  477 (648)
Q Consensus       400 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A-~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~  477 (648)
                      +..+++..-            .|+...-..+-...++. -++.++ ...-.+|.+..  ......+.+.-.+.+.|..++
T Consensus       475 l~~L~~~k~------------hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qk  540 (625)
T KOG4422|consen  475 LMLLARDKL------------HPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQK  540 (625)
T ss_pred             HHHHhcCCC------------CCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHH
Confidence            444443320            11111000111111110 011111 12223344333  333344455555666666666


Q ss_pred             HHHHHHHhHHhcCCCCChhHHH---HHHHHhhhcCCHHHHHHHHHhC
Q 037816          478 GMEFLKSMTEVHRISPRAEHYA---CVVDMVGRAGLLIEARSFIERM  521 (648)
Q Consensus       478 A~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~  521 (648)
                      |.+++..+.++..--|-....+   -+++.-.+......|..+++-|
T Consensus       541 A~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a  587 (625)
T KOG4422|consen  541 AWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA  587 (625)
T ss_pred             HHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            6666666644333333333333   3444455556666666666655

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.76  E-value=7.8e-15  Score=148.50  Aligned_cols=535  Identities=10%  Similarity=0.038  Sum_probs=319.3

Q ss_pred             ccCCCCcCCCcchHHHHHHHHhccCCCcchhHHHHHHhhhcCCCCCcCcCCCCChHHHHHHHHHHHhcCCChhHHHHhhc
Q 037816           34 SSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFD  113 (648)
Q Consensus        34 ~~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  113 (648)
                      ++..|+.| ++.||.+++..|+..|+.+.|- +|..|.-.  .+        +.+..+++.++....+.++.+.+.    
T Consensus        16 ~e~~gi~P-nRvtyqsLiarYc~~gdieaat-if~fm~~k--sL--------pv~e~vf~~lv~sh~~And~Enpk----   79 (1088)
T KOG4318|consen   16 HEISGILP-NRVTYQSLIARYCTKGDIEAAT-IFPFMEIK--SL--------PVREGVFRGLVASHKEANDAENPK----   79 (1088)
T ss_pred             HHHhcCCC-chhhHHHHHHHHcccCCCcccc-chhhhhcc--cc--------cccchhHHHHHhcccccccccCCC----
Confidence            48899999 9999999999999999999999 98888777  66        888999999999999999988776    


Q ss_pred             cCCCCCcccHHHHHHHHHhcCCchH---HHHHHHHHH----HcCCCCCcHhHHHHHHHHhhccCChHH--------HHHH
Q 037816          114 DMPMRDTVSWNTMVSGFLRNGEFDM---GFGFFKRSL----ELGFYQLDQASFTIILSACDRSELSLV--------SKMI  178 (648)
Q Consensus       114 ~~~~~~~~~y~~li~~~~~~g~~~~---A~~~~~~m~----~~~~~p~~~~~~~~ll~~~~~~~~~~~--------a~~~  178 (648)
                         .|...+|..|..+|.+.|+...   ..+.++...    ..|+.-... -|...+.+|-+ -..+.        -+.+
T Consensus        80 ---ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~-~fl~k~~c~p~-~lpda~n~illlv~egl  154 (1088)
T KOG4318|consen   80 ---EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPER-WFLMKIHCCPH-SLPDAENAILLLVLEGL  154 (1088)
T ss_pred             ---CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHH-HHHhhcccCcc-cchhHHHHHHHHHHHHH
Confidence               7889999999999999999754   222222222    234322222 22222233222 11111        1233


Q ss_pred             HHHHHHhCC-CCChhHHHHHHHHhHhc-----CChhHHHHHhcccC-CCCcccHHHHHHHHHHCCCchHHHHHHHHHHhC
Q 037816          179 HCLVYLCGY-EEEVTVGNALITSYFKC-----GSSSSGRKVFGEMR-VRNVITWTAVISGLVQNQLYEEGLKLFVKMHLG  251 (648)
Q Consensus       179 ~~~~~~~~~-~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  251 (648)
                      ++..++.+. .|...-++... .+.++     ..+++-........ .++..+|.++++.-..+|+.+.|..++.+|++.
T Consensus       155 waqllkll~~~Pvsa~~~p~~-vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~  233 (1088)
T KOG4318|consen  155 WAQLLKLLAKVPVSAWNAPFQ-VFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEK  233 (1088)
T ss_pred             HHHHHHHHhhCCcccccchHH-HHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc
Confidence            333333331 12111111111 11222     22333333333333 378899999999999999999999999999999


Q ss_pred             CCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHH
Q 037816          252 LINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILV  331 (648)
Q Consensus       252 ~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~  331 (648)
                      |++.+.+-|..++-+   .++...++.+++-|...|+.|+..|+...+..+.+.|....+.+....-.--....+..+..
T Consensus       234 gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~r  310 (1088)
T KOG4318|consen  234 GFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACR  310 (1088)
T ss_pred             CCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhc
Confidence            999999988888876   88899999999999999999999999988877777555322221111000001112222222


Q ss_pred             HHHH-----cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCC---CCchhHHHHHHHHH
Q 037816          332 GFAQ-----NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF---TSNPFVNNGLINMY  403 (648)
Q Consensus       332 ~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~  403 (648)
                      +...     .+...-....+.+..-.|+......|...... ...|.-+...++...+.....   ..++..|..++.-|
T Consensus       311 g~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqy  389 (1088)
T KOG4318|consen  311 GLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQY  389 (1088)
T ss_pred             ccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHH
Confidence            2111     11112222233333333444344444333332 235666666666665543221   12333444444444


Q ss_pred             HhCCCHHHHHHHHh--hcCCC--ChhHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC-------CHHHHHHHHHH
Q 037816          404 SKCGDLEDSIKVFS--RMAPR--NSVSWNSMIAAFARHGNGFKALELYEEMKLE----GVEP-------TDVTFLSLLHA  468 (648)
Q Consensus       404 ~~~g~~~~A~~~~~--~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~p-------~~~~~~~ll~~  468 (648)
                      .+.-+..-...++.  ...+.  +...-..+..... .-+...+.+-+..+...    -+.|       -...-+.++..
T Consensus       390 Frr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~-~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~  468 (1088)
T KOG4318|consen  390 FRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLE-NLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLT  468 (1088)
T ss_pred             HHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHH-HhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHH
Confidence            33221111111111  00000  0000000111111 11222222222221110    0111       11223455666


Q ss_pred             HhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHHcCCh
Q 037816          469 CSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-----PVKPDVLVWQALLGACSIHGDS  543 (648)
Q Consensus       469 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~~~~~~~l~~~~~~~g~~  543 (648)
                      |+..-+..+++..-++.... -+   ...|..||+.+....+.+.|..+.++.     .+..|..-+..+.+...+.+..
T Consensus       469 l~se~n~lK~l~~~ekye~~-lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l  544 (1088)
T KOG4318|consen  469 LNSEYNKLKILCDEEKYEDL-LF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAIL  544 (1088)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-Hh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHH
Confidence            66666666776655555442 22   278999999999999999999999988     2334566778888889999999


Q ss_pred             HHHHHHHHHHHhc---CCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCceeE
Q 037816          544 EMGKYAAEKLFLA---QPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISW  600 (648)
Q Consensus       544 ~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~  600 (648)
                      ..+..+++.+.+.   .|.-..++..+.+.....|+.+...++.+-+...|+.. +|--|
T Consensus       545 ~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e-tgPl~  603 (1088)
T KOG4318|consen  545 YDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE-TGPLW  603 (1088)
T ss_pred             HHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-cccce
Confidence            9999999888753   23334566677777888899999999999999999876 34434

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.74  E-value=1.1e-14  Score=136.44  Aligned_cols=445  Identities=11%  Similarity=0.051  Sum_probs=305.8

Q ss_pred             HHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCC----hhHHHHHHHHhH
Q 037816          127 VSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEE----VTVGNALITSYF  202 (648)
Q Consensus       127 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~  202 (648)
                      .+-|..+....+|+..|+-+.++...|+....-..+-..+.+.+.+..|..+++..+..-...+    +.+.+.+.-.+.
T Consensus       208 aqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfi  287 (840)
T KOG2003|consen  208 AQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFI  287 (840)
T ss_pred             HHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEE
Confidence            3455556778899999999988888888773334455667888889999999888876532222    234555556678


Q ss_pred             hcCChhHHHHHhcccC--CCCcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhH--------HHHHHHhhccC-
Q 037816          203 KCGSSSSGRKVFGEMR--VRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTY--------LSSVMACSGLQ-  271 (648)
Q Consensus       203 ~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~--------~~ll~~~~~~~-  271 (648)
                      +.|.++.|...|+...  .|+..+--.|+-++..-|+.++..+.|.+|..--..||..-|        ..|+.-..+.. 
T Consensus       288 q~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~  367 (840)
T KOG2003|consen  288 QAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDH  367 (840)
T ss_pred             ecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHH
Confidence            8999999999999886  466555444455555678999999999999764333333221        12222111111 


Q ss_pred             ----------ChHHHHHHHHHHHHhcCCCchh-------------HH--------HHHHHHHHhcCCHHHHHHHHHhccC
Q 037816          272 ----------ALCEGRQIHGILWKLALQSDLC-------------IE--------SALMDMYSKCGSVEDAWQIFEFAEE  320 (648)
Q Consensus       272 ----------~~~~a~~~~~~~~~~~~~~~~~-------------~~--------~~l~~~~~~~~~~~~A~~~~~~~~~  320 (648)
                                +.+++.-.-..+..--+.|+-.             .+        ..-...|.+.|+++.|.++++-+.+
T Consensus       368 lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~  447 (840)
T KOG2003|consen  368 LKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEK  447 (840)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHh
Confidence                      1112211111111111112110             00        1112346778888888888887777


Q ss_pred             CCcccHHHHHHH-----HHH-cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchh
Q 037816          321 LDGVSMTVILVG-----FAQ-NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPF  394 (648)
Q Consensus       321 ~~~~~~~~li~~-----~~~-~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  394 (648)
                      .|..+-.+....     |.+ -.++..|.++-+...... +-+....+.--+.....|++++|.+.+++.......-...
T Consensus       448 kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ea  526 (840)
T KOG2003|consen  448 KDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEA  526 (840)
T ss_pred             ccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHH
Confidence            655544332221     222 234555555544443321 2222222222233456789999999999998776544444


Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 037816          395 VNNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSH  471 (648)
Q Consensus       395 ~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~  471 (648)
                      .|+ +.-.+-..|++++|++.|-++.   ..+......+...|-...+...|++++-+.... ++.|+..+..|...|-+
T Consensus       527 lfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydq  604 (840)
T KOG2003|consen  527 LFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQ  604 (840)
T ss_pred             HHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhc
Confidence            554 3335677899999999997765   457777778888999999999999999877663 44578889999999999


Q ss_pred             cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH-HHcCChHHHHHH
Q 037816          472 VGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPDVLVWQALLGAC-SIHGDSEMGKYA  549 (648)
Q Consensus       472 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~-~~~g~~~~A~~~  549 (648)
                      .|+-.+|.+.+-+--+  -++-+..+..-|...|....-+++|+.+|++. -+.|+..-|..++..| .+.|++.+|..+
T Consensus       605 egdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~  682 (840)
T KOG2003|consen  605 EGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDL  682 (840)
T ss_pred             ccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHH
Confidence            9999999998776644  35559999999999999999999999999998 6789999999998776 567999999999


Q ss_pred             HHHHHhcCCCCCccHHHHHHHHHhcCC
Q 037816          550 AEKLFLAQPDSPAPYILMANIYSCSGR  576 (648)
Q Consensus       550 ~~~~~~~~p~~~~~~~~l~~~~~~~g~  576 (648)
                      |+...+..|.+..+...+.+.+...|.
T Consensus       683 yk~~hrkfpedldclkflvri~~dlgl  709 (840)
T KOG2003|consen  683 YKDIHRKFPEDLDCLKFLVRIAGDLGL  709 (840)
T ss_pred             HHHHHHhCccchHHHHHHHHHhccccc
Confidence            999999999999999999999888775

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.72  E-value=2.3e-12  Score=126.70  Aligned_cols=502  Identities=11%  Similarity=0.040  Sum_probs=391.1

Q ss_pred             CChHHHHHHHHHHHhcCCChhHHHHhhccCCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHH
Q 037816           86 PNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSA  165 (648)
Q Consensus        86 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~  165 (648)
                      |.++..|-..+.    ..+.++|..++....+--+. -.-|.-+|++...++.|..++++.++.  -|.+...|.+....
T Consensus       377 P~sv~LWKaAVe----lE~~~darilL~rAveccp~-s~dLwlAlarLetYenAkkvLNkaRe~--iptd~~IWitaa~L  449 (913)
T KOG0495|consen  377 PRSVRLWKAAVE----LEEPEDARILLERAVECCPQ-SMDLWLALARLETYENAKKVLNKAREI--IPTDREIWITAAKL  449 (913)
T ss_pred             CchHHHHHHHHh----ccChHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHHHHHhh--CCCChhHHHHHHHH
Confidence            555555554332    34455566666655432111 223455677788899999999998876  36666588888888


Q ss_pred             hhccCChHHHHHHHHHH----HHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccCC------CCcccHHHHHHHHHHC
Q 037816          166 CDRSELSLVSKMIHCLV----YLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV------RNVITWTAVISGLVQN  235 (648)
Q Consensus       166 ~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~  235 (648)
                      =-..|+.+....+.+.-    ...|+..+...|-.=...|-..|..--+..+......      .-..+|+.-...|.+.
T Consensus       450 EE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~  529 (913)
T KOG0495|consen  450 EEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKR  529 (913)
T ss_pred             HHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhc
Confidence            88888888888887654    3467777777777777777777777666666655531      2245788888999999


Q ss_pred             CCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 037816          236 QLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIF  315 (648)
Q Consensus       236 g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  315 (648)
                      +.++-|..+|....+- .+-+...|.-....--..|..+....+++.....- +.....|.....-+...|++..|..++
T Consensus       530 ~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il  607 (913)
T KOG0495|consen  530 PAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVIL  607 (913)
T ss_pred             chHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHH
Confidence            9999999999988762 22344556666666677899999999999988764 455667777788888899999999999


Q ss_pred             HhccCC---CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCc
Q 037816          316 EFAEEL---DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN  392 (648)
Q Consensus       316 ~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~  392 (648)
                      ...-+.   +...|-+-+..-..+.+++.|..+|.+....  .|+...|.--+..---.+..++|.+++++..+. ++.-
T Consensus       608 ~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f  684 (913)
T KOG0495|consen  608 DQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDF  684 (913)
T ss_pred             HHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCch
Confidence            887653   4456777778888999999999999998774  577777777666667788999999999888775 3555


Q ss_pred             hhHHHHHHHHHHhCCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037816          393 PFVNNGLINMYSKCGDLEDSIKVFSRMAP--R-NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHAC  469 (648)
Q Consensus       393 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~  469 (648)
                      ...|-.+.+.+-+.++.+.|...|..-.+  | .+..|-.|...=-+.|+.-.|..++++..-++ +-+...|...|+.=
T Consensus       685 ~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~E  763 (913)
T KOG0495|consen  685 HKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRME  763 (913)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHH
Confidence            67788888999999999999999987664  3 55678777777788899999999999998876 44778899999999


Q ss_pred             hccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 037816          470 SHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYA  549 (648)
Q Consensus       470 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~  549 (648)
                      .+.|+.+.|..++.++.+  .++.+...|..-|.+..+.++-......+++.  .-|+....++...+....++++|.+.
T Consensus       764 lR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkc--e~dphVllaia~lfw~e~k~~kar~W  839 (913)
T KOG0495|consen  764 LRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC--EHDPHVLLAIAKLFWSEKKIEKAREW  839 (913)
T ss_pred             HHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhc--cCCchhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998  56778888888999988888888888888877  34566677777888889999999999


Q ss_pred             HHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCceeEEEEcCE
Q 037816          550 AEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQ  606 (648)
Q Consensus       550 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~  606 (648)
                      |+++++.+|++..+|..+...+...|.-++-.+++++...  ..|.-|-.|+.+...
T Consensus       840 f~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~--~EP~hG~~W~avSK~  894 (913)
T KOG0495|consen  840 FERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET--AEPTHGELWQAVSKD  894 (913)
T ss_pred             HHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc--cCCCCCcHHHHHhhh
Confidence            9999999999999999999999999999999999998876  567777788665433

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.71  E-value=8.8e-13  Score=134.75  Aligned_cols=565  Identities=13%  Similarity=0.045  Sum_probs=367.0

Q ss_pred             ccccCCcchhHhhHhHHhhccccCCCc----cCCCCcCCCcchHHHHHHHHhccCCCcchhHHHHHHhhhcCCCCCcCcC
Q 037816            8 LKLNSNFPFCSSLVSPFITKIIQDPTS----STSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVY   83 (648)
Q Consensus         8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   83 (648)
                      ++=|-+...|.+|..+|.++|+-..+.    ..+-+.|.|...+-.+.....++|++++|.-+|..+++.   -      
T Consensus       167 kqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~---~------  237 (895)
T KOG2076|consen  167 KQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQA---N------  237 (895)
T ss_pred             HhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhc---C------
Confidence            344999999999999999999777763    666788878888999999999999999999999999988   2      


Q ss_pred             CCCChHHHHHHHHHHHhcCCChhHHHHhhccCCCCCc----c----cHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCc
Q 037816           84 NVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDT----V----SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLD  155 (648)
Q Consensus        84 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~----~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~  155 (648)
                        |++...+-.-...|-+.|+...|.+.|..+-+-++    .    .--.++..+...++-+.|++.++.....+..-..
T Consensus       238 --p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~  315 (895)
T KOG2076|consen  238 --PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEAS  315 (895)
T ss_pred             --CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcccccc
Confidence              55555555567789999999999999988764322    1    2233455677777789999999888774333333


Q ss_pred             HhHHHHHHHHhhccCChHHHHHHHHHHHHh---------------------------CCCCChhH-HHHHHHHhHhcCCh
Q 037816          156 QASFTIILSACDRSELSLVSKMIHCLVYLC---------------------------GYEEEVTV-GNALITSYFKCGSS  207 (648)
Q Consensus       156 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---------------------------~~~~~~~~-~~~li~~~~~~g~~  207 (648)
                      ...++.++..+......+.+..........                           ++.++..+ +..+--...+.+..
T Consensus       316 ~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~  395 (895)
T KOG2076|consen  316 LEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKEREL  395 (895)
T ss_pred             ccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccch
Confidence            337777777777777777776655555441                           12233333 22222222233444


Q ss_pred             hHHHHHhcccC----CCCcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHH
Q 037816          208 SSGRKVFGEMR----VRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGIL  283 (648)
Q Consensus       208 ~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~  283 (648)
                      .+++.-|-...    ..++..|..+..+|...|++.+|+.+|..+......-+...|-.+..++...|..+.|.+.+..+
T Consensus       396 ~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kv  475 (895)
T KOG2076|consen  396 LEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKV  475 (895)
T ss_pred             HHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence            44443332221    22456788899999999999999999999987666666778889999999999999999999999


Q ss_pred             HHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCccc------------HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 037816          284 WKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS------------MTVILVGFAQNGFEEEAMQLFVKMVK  351 (648)
Q Consensus       284 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------------~~~li~~~~~~~~~~~a~~~~~~m~~  351 (648)
                      +... +.+..+-..|...+-+.|+.++|.+.+..+..+|...            .-.....+.+.|+.++=+.+-..|+.
T Consensus       476 l~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~  554 (895)
T KOG2076|consen  476 LILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVD  554 (895)
T ss_pred             HhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            8764 4455666788889999999999999999987766321            11123456677777665555554433


Q ss_pred             cC----------------------CCcCHHHHHHHHHHHhccCChhHHHHHHH------HHHHhCCCCch--hHHHHHHH
Q 037816          352 AG----------------------IEIDPNMVSAVLGVFGVDTSLGLGKQIHS------LIIKSDFTSNP--FVNNGLIN  401 (648)
Q Consensus       352 ~~----------------------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~------~~~~~~~~~~~--~~~~~li~  401 (648)
                      .+                      .+-...+...++.+-.+.++......-..      .-...|+..+.  ..+.-++.
T Consensus       555 ~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~  634 (895)
T KOG2076|consen  555 DFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELIL  634 (895)
T ss_pred             HHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHH
Confidence            21                      11122233333344434433222222211      11123333333  24556677


Q ss_pred             HHHhCCCHHHHHHHHhhcCCC-----Ch----hHHHHHHHHHHHcCChHHHHHHHHHHHHc-CC--CCCH-HHHHHHHH-
Q 037816          402 MYSKCGDLEDSIKVFSRMAPR-----NS----VSWNSMIAAFARHGNGFKALELYEEMKLE-GV--EPTD-VTFLSLLH-  467 (648)
Q Consensus       402 ~~~~~g~~~~A~~~~~~~~~~-----~~----~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-~~--~p~~-~~~~~ll~-  467 (648)
                      .+++.+++++|+.+...+...     +.    ..-...+.+.+..+++..|...++.|... +.  .|.. ..|+..++ 
T Consensus       635 ~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~  714 (895)
T KOG2076|consen  635 SLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSY  714 (895)
T ss_pred             HHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence            788888888888877766532     11    12334455666777888888777777654 11  1111 12221111 


Q ss_pred             ----------------------------------HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHH-HHhh------
Q 037816          468 ----------------------------------ACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVV-DMVG------  506 (648)
Q Consensus       468 ----------------------------------~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~-~~~~------  506 (648)
                                                        -+...+.+..|++.+-.+...   .|+....+.++ -++.      
T Consensus       715 ~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~---~pd~Pl~nl~lglafih~a~qr  791 (895)
T KOG2076|consen  715 FSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQ---NPDSPLINLCLGLAFIHLALQR  791 (895)
T ss_pred             HHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHh---CCCCcHHHHHHHHHHHHHHHHH
Confidence                                              112345677888877777553   45533333322 2221      


Q ss_pred             ----hcCCHHHHHHHHHhC-CC-CC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC------------ccHHH
Q 037816          507 ----RAGLLIEARSFIERM-PV-KP--DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSP------------APYIL  566 (648)
Q Consensus       507 ----~~g~~~~A~~~~~~~-~~-~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~------------~~~~~  566 (648)
                          |.-..-++..++.+. .. .+  ....+-.+.++|-..|-+.-|+.+|+++++..|.+.            .+-..
T Consensus       792 ~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~N  871 (895)
T KOG2076|consen  792 RVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYN  871 (895)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhh
Confidence                111244566666555 11 12  466677899999999999999999999999876533            23345


Q ss_pred             HHHHHHhcCChHHHHHHHHHH
Q 037816          567 MANIYSCSGRWKERAKAIKRM  587 (648)
Q Consensus       567 l~~~~~~~g~~~~A~~~~~~m  587 (648)
                      +.-+|..+|+..-|.+++++-
T Consensus       872 L~LIY~~SGn~~lArqil~ky  892 (895)
T KOG2076|consen  872 LHLIYKKSGNMQLARQILEKY  892 (895)
T ss_pred             hhhhhccCCcHHHHHHHHHhh
Confidence            666899999999999998763

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.66  E-value=8.1e-14  Score=130.83  Aligned_cols=427  Identities=12%  Similarity=0.085  Sum_probs=296.2

Q ss_pred             HHHHHH---HHhhccCChHHHHHHHHHHHHhCCCCChhHH-HHHHHHhHhcCChhHHHHHhcccCC--CC------cccH
Q 037816          158 SFTIIL---SACDRSELSLVSKMIHCLVYLCGYEEEVTVG-NALITSYFKCGSSSSGRKVFGEMRV--RN------VITW  225 (648)
Q Consensus       158 ~~~~ll---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~--~~------~~~~  225 (648)
                      ||..|.   .-|.......+|...++.+.+...-|+.... ..+...+.+.+.+.+|+++++....  |+      +...
T Consensus       200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil  279 (840)
T KOG2003|consen  200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL  279 (840)
T ss_pred             hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence            555444   4466667788888889988887766665443 3456778899999999999876642  22      2245


Q ss_pred             HHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhH--------HHH
Q 037816          226 TAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCI--------ESA  297 (648)
Q Consensus       226 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------~~~  297 (648)
                      +.+.-.+.+.|.++.|+..|+...+.  .|+-.+-..|+-++...|+-++..+.|..|......+|..-        -..
T Consensus       280 ~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~  357 (840)
T KOG2003|consen  280 NNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN  357 (840)
T ss_pred             hhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence            55556688999999999999998763  58887766677777778999999999999986543332221        122


Q ss_pred             HHHHHHhcCC-----------HHHHHHHHHhccC----CCccc---HH----------H--------HHHHHHHcCCHHH
Q 037816          298 LMDMYSKCGS-----------VEDAWQIFEFAEE----LDGVS---MT----------V--------ILVGFAQNGFEEE  341 (648)
Q Consensus       298 l~~~~~~~~~-----------~~~A~~~~~~~~~----~~~~~---~~----------~--------li~~~~~~~~~~~  341 (648)
                      |+.--.+...           .++++-.--++..    ++...   |.          .        -...+.++|+++.
T Consensus       358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~  437 (840)
T KOG2003|consen  358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEG  437 (840)
T ss_pred             HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHH
Confidence            3322222221           1222211112222    22110   11          0        1224788999999


Q ss_pred             HHHHHHHHHHcCCCcCHHHHHHH--HHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhc
Q 037816          342 AMQLFVKMVKAGIEIDPNMVSAV--LGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRM  419 (648)
Q Consensus       342 a~~~~~~m~~~~~~p~~~~~~~l--l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~  419 (648)
                      |+++++-+....-+.-...-+.|  +..+....++..|.++-+...... .-++.....-...-...|++++|.+.|.+.
T Consensus       438 aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykea  516 (840)
T KOG2003|consen  438 AIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEA  516 (840)
T ss_pred             HHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHH
Confidence            99999888765433333332222  222233456777777776665433 223333322233344579999999999999


Q ss_pred             CCCChhHHHHHHH---HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChh
Q 037816          420 APRNSVSWNSMIA---AFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAE  496 (648)
Q Consensus       420 ~~~~~~~~~~l~~---~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  496 (648)
                      ...|...-.+|..   .+-..|+.++|++.|-++..- +..+...+..+...|....+..+|++++.+...  -++.++.
T Consensus       517 l~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~  593 (840)
T KOG2003|consen  517 LNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPA  593 (840)
T ss_pred             HcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHH
Confidence            8877655444443   456789999999999888753 345777888888999999999999999998865  4566999


Q ss_pred             HHHHHHHHhhhcCCHHHHHHHHHh-CC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhc
Q 037816          497 HYACVVDMVGRAGLLIEARSFIER-MP-VKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCS  574 (648)
Q Consensus       497 ~~~~l~~~~~~~g~~~~A~~~~~~-~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  574 (648)
                      +...|.+.|-+.|+-.+|.+.+-+ .. +..+..+..-|...|....-.++|+.+|+++.-..|.....-..++.++.+.
T Consensus       594 ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrs  673 (840)
T KOG2003|consen  594 ILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRS  673 (840)
T ss_pred             HHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhc
Confidence            999999999999999999987544 33 3446777777888888999999999999999888898766666777788899


Q ss_pred             CChHHHHHHHHHHHhC
Q 037816          575 GRWKERAKAIKRMKEM  590 (648)
Q Consensus       575 g~~~~A~~~~~~m~~~  590 (648)
                      |+|+.|.++|+...+.
T Consensus       674 gnyqka~d~yk~~hrk  689 (840)
T KOG2003|consen  674 GNYQKAFDLYKDIHRK  689 (840)
T ss_pred             ccHHHHHHHHHHHHHh
Confidence            9999999999998774

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.64  E-value=2.2e-10  Score=113.05  Aligned_cols=528  Identities=13%  Similarity=0.104  Sum_probs=383.6

Q ss_pred             CcchHHHHHHHHhcc-----CCCcchhHHHHHHhhhcCCCCCcCcCCCCChHHHHHHHHHHHhcCCChhHHHHhhccCCC
Q 037816           43 NYVDISRLLSISAKE-----GHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPM  117 (648)
Q Consensus        43 ~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~  117 (648)
                      |+-.|..=|++-...     +|...|+-++..+.+.  .         |.++..|-+-.+.=-..|.+..|..+..+=-+
T Consensus       245 DpkgYLtdL~sm~p~~~~dl~DikKaR~llKSvret--n---------P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe  313 (913)
T KOG0495|consen  245 DPKGYLTDLNSMIPTSGGDLEDIKKARLLLKSVRET--N---------PKHPPGWIASARLEEVAGKLSVARNLIMKGCE  313 (913)
T ss_pred             CchHHHhHHHhcCCCccCcHHHHHHHHHHHHHHHhc--C---------CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            777777777764433     4677888898888877  2         33344444444444445666666655533210


Q ss_pred             ---CCc------------ccHHHHHHH-----------HHhcC----CchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhh
Q 037816          118 ---RDT------------VSWNTMVSG-----------FLRNG----EFDMGFGFFKRSLELGFYQLDQASFTIILSACD  167 (648)
Q Consensus       118 ---~~~------------~~y~~li~~-----------~~~~g----~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~  167 (648)
                         .+.            .+.-+++.-           +++.-    +...=..++++..+.-  |++..    |=++..
T Consensus       314 ~cprSeDvWLeaiRLhp~d~aK~vvA~Avr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~i--P~sv~----LWKaAV  387 (913)
T KOG0495|consen  314 ECPRSEDVWLEAIRLHPPDVAKTVVANAVRFLPTSVRLWLKAADLESDTKNKKRVLRKALEHI--PRSVR----LWKAAV  387 (913)
T ss_pred             hCCchHHHHHHHHhcCChHHHHHHHHHHHHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHhC--CchHH----HHHHHH
Confidence               111            111122211           12221    2222334455555442  55542    334444


Q ss_pred             ccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccCC---CCcccHHHHHHHHHHCCCchHHHHH
Q 037816          168 RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV---RNVITWTAVISGLVQNQLYEEGLKL  244 (648)
Q Consensus       168 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~  244 (648)
                      ...+.+.|..++....+.- +.+..    |.-+|++..-++.|.++++...+   .+...|-+-...=-.+|+.+...++
T Consensus       388 elE~~~darilL~rAvecc-p~s~d----LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~ki  462 (913)
T KOG0495|consen  388 ELEEPEDARILLERAVECC-PQSMD----LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKI  462 (913)
T ss_pred             hccChHHHHHHHHHHHHhc-cchHH----HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHH
Confidence            5556666777777776642 33333    34456677788888888877653   3566676666666678898888888


Q ss_pred             HHHH----HhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 037816          245 FVKM----HLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSD--LCIESALMDMYSKCGSVEDAWQIFEFA  318 (648)
Q Consensus       245 ~~~m----~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~  318 (648)
                      +.+-    ...|+..+...|..=..+|-..|..-.+..+....+..|+...  ..+|+.-...|.+.+.++-|..+|...
T Consensus       463 i~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~a  542 (913)
T KOG0495|consen  463 IDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHA  542 (913)
T ss_pred             HHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHH
Confidence            7654    5678889999998888899999999999999999988887543  458888888999999999999999888


Q ss_pred             cCC---CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhH
Q 037816          319 EEL---DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFV  395 (648)
Q Consensus       319 ~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  395 (648)
                      .+-   +...|...+..--..|..+....+|++.... ++-....+.......-..|+...|..++..+.+.. +.+..+
T Consensus       543 lqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseei  620 (913)
T KOG0495|consen  543 LQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEI  620 (913)
T ss_pred             HhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHH
Confidence            763   4455666666666778899999999999886 34455556666666777899999999999998876 457788


Q ss_pred             HHHHHHHHHhCCCHHHHHHHHhhcC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcc
Q 037816          396 NNGLINMYSKCGDLEDSIKVFSRMA--PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD-VTFLSLLHACSHV  472 (648)
Q Consensus       396 ~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~  472 (648)
                      +-+-+.......+++.|..+|.+..  .++...|.--+...--.+..++|.+++++.++.  -|+- ..|..+.+.+-+.
T Consensus       621 wlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~  698 (913)
T KOG0495|consen  621 WLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQM  698 (913)
T ss_pred             HHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHH
Confidence            8888999999999999999998876  456777776666666788999999999998884  5664 4677777888999


Q ss_pred             CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 037816          473 GLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM--PVKPDVLVWQALLGACSIHGDSEMGKYAA  550 (648)
Q Consensus       473 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~  550 (648)
                      ++.+.|...|..-.+  .++..+..|-.|.+.=-+.|.+-+|..++++.  +...+...|...++.-.+.|+.+.|..++
T Consensus       699 ~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lm  776 (913)
T KOG0495|consen  699 ENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLM  776 (913)
T ss_pred             HHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHH
Confidence            999999999887765  45557778888888888999999999999998  44456888999999999999999999998


Q ss_pred             HHHHhcCCC------------------------------CCccHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCceeE
Q 037816          551 EKLFLAQPD------------------------------SPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISW  600 (648)
Q Consensus       551 ~~~~~~~p~------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~  600 (648)
                      .++++..|.                              |+.+...++..+....+++.|.++|.+.++.+  |+.|-.|
T Consensus       777 akALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d--~d~GD~w  854 (913)
T KOG0495|consen  777 AKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD--PDNGDAW  854 (913)
T ss_pred             HHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC--CccchHH
Confidence            888765554                              44567778888889999999999999998855  5555555

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.62  E-value=1.5e-15  Score=146.57  Aligned_cols=255  Identities=20%  Similarity=0.179  Sum_probs=113.1

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHH-HHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCC
Q 037816          330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMV-SAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGD  408 (648)
Q Consensus       330 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  408 (648)
                      ...+.+.|++++|++++++......+|+...| ..+...+-..++.+.|...++.+...+. .++..+..++.. ...++
T Consensus        15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~~   92 (280)
T PF13429_consen   15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDGD   92 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccccc
Confidence            44556667777777777544433223333333 3333444556777777777777776552 355666677766 68888


Q ss_pred             HHHHHHHHhhcC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 037816          409 LEDSIKVFSRMA--PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG-VEPTDVTFLSLLHACSHVGLVNKGMEFLKSM  485 (648)
Q Consensus       409 ~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~  485 (648)
                      +++|.+++...-  .++...+..++..+...++++++..+++.+.... .+++...|..+...+.+.|+.++|.+.+++.
T Consensus        93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a  172 (280)
T PF13429_consen   93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA  172 (280)
T ss_dssp             -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999988887653  3466677778888899999999999999987533 3456777888888899999999999999999


Q ss_pred             HHhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc
Q 037816          486 TEVHRISP-RAEHYACVVDMVGRAGLLIEARSFIERM--PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPA  562 (648)
Q Consensus       486 ~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~  562 (648)
                      .+.   .| +......++..+...|+.+++.++++..  ....|+..+..+..++...|+.++|+..++++.+.+|+|+.
T Consensus       173 l~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~  249 (280)
T PF13429_consen  173 LEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL  249 (280)
T ss_dssp             HHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred             HHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence            874   45 6888999999999999999988888777  22445667888999999999999999999999999999999


Q ss_pred             cHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037816          563 PYILMANIYSCSGRWKERAKAIKRMKE  589 (648)
Q Consensus       563 ~~~~l~~~~~~~g~~~~A~~~~~~m~~  589 (648)
                      +...++.++...|+.++|.+++++..+
T Consensus       250 ~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  250 WLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             HHHHHHHHHT-----------------
T ss_pred             ccccccccccccccccccccccccccc
Confidence            999999999999999999999887644

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.59  E-value=8.2e-12  Score=118.95  Aligned_cols=214  Identities=14%  Similarity=0.119  Sum_probs=170.0

Q ss_pred             ccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHH
Q 037816          370 VDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALEL  446 (648)
Q Consensus       370 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~  446 (648)
                      -.|+.-.+..-++..++....++ ..|-.+..+|....+.++....|....   +.|+.+|..-...+.-.+++++|..=
T Consensus       338 L~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD  416 (606)
T KOG0547|consen  338 LKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD  416 (606)
T ss_pred             hcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence            45667777777777776653332 236666667888888888888887765   34677787777777778899999999


Q ss_pred             HHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCC
Q 037816          447 YEEMKLEGVEP-TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVK  524 (648)
Q Consensus       447 ~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~  524 (648)
                      |++.++.  .| +...|..+.-+..+.+.+++++..|++.++  .++..+++|+.....+...+++++|.+.|+.. .+.
T Consensus       417 F~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE  492 (606)
T KOG0547|consen  417 FQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE  492 (606)
T ss_pred             HHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence            9999884  45 566777777777889999999999999998  57778999999999999999999999999887 334


Q ss_pred             CC---------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037816          525 PD---------VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKE  589 (648)
Q Consensus       525 p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  589 (648)
                      |+         +.+..+++..- -.+++..|+.+++++++++|....+|..|+..-..+|+.++|+++|++...
T Consensus       493 ~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~  565 (606)
T KOG0547|consen  493 PREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ  565 (606)
T ss_pred             cccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            43         33333333222 349999999999999999999999999999999999999999999998754

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.55  E-value=1.6e-10  Score=109.68  Aligned_cols=360  Identities=15%  Similarity=0.060  Sum_probs=195.8

Q ss_pred             CCChhHHHHHHHHhHhcCChhHHHHHhcccCCCCcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHH--HHHH
Q 037816          188 EEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYL--SSVM  265 (648)
Q Consensus       188 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~--~ll~  265 (648)
                      ..|...+-.....+-+.|....|.+.|......-+..|.+.+....-..+.+.+..+..     |...|...+.  -+..
T Consensus       161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~-----~l~~~~h~M~~~F~~~  235 (559)
T KOG1155|consen  161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVV-----GLPSDMHWMKKFFLKK  235 (559)
T ss_pred             cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHh-----cCcccchHHHHHHHHH
Confidence            44544444444455667788888888877765545555555544333333332222211     1111211111  1223


Q ss_pred             HhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHHcCCHHHHHHH
Q 037816          266 ACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQL  345 (648)
Q Consensus       266 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~  345 (648)
                      ++-.....+++.+-.......|++.+...-+....+.-...++++|+.+|+++.+.|+.-.                   
T Consensus       236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl-------------------  296 (559)
T KOG1155|consen  236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRL-------------------  296 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcc-------------------
Confidence            4444455666666666666666666555555555555556666666666666665433211                   


Q ss_pred             HHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC---C
Q 037816          346 FVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP---R  422 (648)
Q Consensus       346 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~  422 (648)
                                -|..+|+.++-.-.....    ..++..-...--+-.+.|...+.+-|.-.++.++|...|++..+   .
T Consensus       297 ----------~dmdlySN~LYv~~~~sk----Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~  362 (559)
T KOG1155|consen  297 ----------DDMDLYSNVLYVKNDKSK----LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK  362 (559)
T ss_pred             ----------hhHHHHhHHHHHHhhhHH----HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc
Confidence                      122233222211110000    00111111000122233444455555556666666666665543   2


Q ss_pred             ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHH
Q 037816          423 NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP-RAEHYACV  501 (648)
Q Consensus       423 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l  501 (648)
                      ....|+.+..-|...++...|++.++..++-. +-|...|-.|.++|.-.+-..-|+-+|+++.+   +.| |+..|.+|
T Consensus       363 ~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~---~kPnDsRlw~aL  438 (559)
T KOG1155|consen  363 YLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALE---LKPNDSRLWVAL  438 (559)
T ss_pred             hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHh---cCCCchHHHHHH
Confidence            34456666666777777777777777776633 23666777777777777777777777777754   334 67777777


Q ss_pred             HHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-------cCCCCCccHHHHHHHHH
Q 037816          502 VDMVGRAGLLIEARSFIERM--PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFL-------AQPDSPAPYILMANIYS  572 (648)
Q Consensus       502 ~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~p~~~~~~~~l~~~~~  572 (648)
                      .++|.+.++.++|++.|++.  ....+...+..|...|-+.++.++|...+++-++       ..|.-..+...|+.-+.
T Consensus       439 G~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~  518 (559)
T KOG1155|consen  439 GECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFK  518 (559)
T ss_pred             HHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Confidence            77777777777777777766  2233456667777777777777777777776654       22323334445666677


Q ss_pred             hcCChHHHHHHHHHHHh
Q 037816          573 CSGRWKERAKAIKRMKE  589 (648)
Q Consensus       573 ~~g~~~~A~~~~~~m~~  589 (648)
                      +.+++++|..+......
T Consensus       519 k~~~~~~As~Ya~~~~~  535 (559)
T KOG1155|consen  519 KMKDFDEASYYATLVLK  535 (559)
T ss_pred             hhcchHHHHHHHHHHhc
Confidence            77777777766555433

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.54  E-value=6.2e-11  Score=115.33  Aligned_cols=482  Identities=11%  Similarity=0.002  Sum_probs=278.2

Q ss_pred             chHHHHHHHHhccCCCcchhHHHHHHhhhcCCCCCcCcCCCCChHHHHHHHHHHHhcCCChhHHHHhhccC--CCCCccc
Q 037816           45 VDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDM--PMRDTVS  122 (648)
Q Consensus        45 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~  122 (648)
                      .-+..+++-+..+..+..|.-+-+.+...            .-|+.----+..++.-.|+++.|..+...-  .+.|..+
T Consensus        17 ~~~~~~~r~~l~q~~y~~a~f~adkV~~l------------~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~c   84 (611)
T KOG1173|consen   17 EKYRRLVRDALMQHRYKTALFWADKVAGL------------TNDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIAC   84 (611)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHhc------------cCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHH
Confidence            34667777777777888888877777665            334444445677888889999988887654  4678889


Q ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhH
Q 037816          123 WNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYF  202 (648)
Q Consensus       123 y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  202 (648)
                      ......++.+..++++|..++.+-...   .+.. .|-.-  ..+..-..+.+...      .+.......+-.-...|.
T Consensus        85 ryL~~~~l~~lk~~~~al~vl~~~~~~---~~~f-~yy~~--~~~~~l~~n~~~~~------~~~~~essic~lRgk~y~  152 (611)
T KOG1173|consen   85 RYLAAKCLVKLKEWDQALLVLGRGHVE---TNPF-SYYEK--DAANTLELNSAGED------LMINLESSICYLRGKVYV  152 (611)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccchh---hcch-hhcch--hhhceeccCccccc------ccccchhceeeeeeehhh
Confidence            999999999999999999998743110   0000 00000  00000000000000      000011111111123344


Q ss_pred             hcCChhHHHHHhcccCCCCcccHHHHHHHHHHCCCchHHHHHHHHHHhCC----CCCChhhHHHHHHHhhccCChHHHHH
Q 037816          203 KCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGL----INPNSLTYLSSVMACSGLQALCEGRQ  278 (648)
Q Consensus       203 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~p~~~t~~~ll~~~~~~~~~~~a~~  278 (648)
                      ...+.++|...+.+....|+..+.++...-..  ..-.+.+.++.+....    .+-+......+.........-+....
T Consensus       153 al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~  230 (611)
T KOG1173|consen  153 ALDNREEARDKYKEALLADAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLT  230 (611)
T ss_pred             hhccHHHHHHHHHHHHhcchhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccc
Confidence            55667777777777666666665554332211  1111212222221100    01111111111111100000000000


Q ss_pred             HHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCH
Q 037816          279 IHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDP  358 (648)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~  358 (648)
                      .-.+..-.+...+..+.....+-                               +...+++.+..++++...+.. ++..
T Consensus       231 r~~~~sl~~l~~~~dll~~~ad~-------------------------------~y~~c~f~~c~kit~~lle~d-pfh~  278 (611)
T KOG1173|consen  231 RNEDESLIGLAENLDLLAEKADR-------------------------------LYYGCRFKECLKITEELLEKD-PFHL  278 (611)
T ss_pred             cCchhhhhhhhhcHHHHHHHHHH-------------------------------HHHcChHHHHHHHhHHHHhhC-CCCc
Confidence            00000001122223333333333                               344455555555555554432 3444


Q ss_pred             HHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCC---ChhHHHHHHHHHH
Q 037816          359 NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR---NSVSWNSMIAAFA  435 (648)
Q Consensus       359 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~  435 (648)
                      ..+..-|.++...|+..+-..+-..+++. .|..+.+|-++.--|.-.|+..+|++.|.+...-   -...|-....+|+
T Consensus       279 ~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa  357 (611)
T KOG1173|consen  279 PCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFA  357 (611)
T ss_pred             chHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhh
Confidence            44444444444555544444444444443 2555666777777777778888888888765532   2457888888888


Q ss_pred             HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHhhhcCCHHHH
Q 037816          436 RHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP-RAEHYACVVDMVGRAGLLIEA  514 (648)
Q Consensus       436 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A  514 (648)
                      -.|..++|+..+...-+.= +-....+--+.--|.+.++.+.|.++|.++..   +-| |+...+-+.-.....+.+.+|
T Consensus       358 ~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a---i~P~Dplv~~Elgvvay~~~~y~~A  433 (611)
T KOG1173|consen  358 GEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA---IAPSDPLVLHELGVVAYTYEEYPEA  433 (611)
T ss_pred             hcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHHHHh---cCCCcchhhhhhhheeehHhhhHHH
Confidence            8888888888888776631 11222233344457788889999999988864   444 777888888777788888888


Q ss_pred             HHHHHhC-----CC---CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHH
Q 037816          515 RSFIERM-----PV---KP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIK  585 (648)
Q Consensus       515 ~~~~~~~-----~~---~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  585 (648)
                      ...|+..     .+   ++ -..+++.|..+|.+.+.+++|+..+++++.+.|.++.+|.+++-+|...|+++.|++.|.
T Consensus       434 ~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fh  513 (611)
T KOG1173|consen  434 LKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFH  513 (611)
T ss_pred             HHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHH
Confidence            8888765     11   11 245678888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHh
Q 037816          586 RMKE  589 (648)
Q Consensus       586 ~m~~  589 (648)
                      +.+-
T Consensus       514 KaL~  517 (611)
T KOG1173|consen  514 KALA  517 (611)
T ss_pred             HHHh
Confidence            8755

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.54  E-value=3.8e-11  Score=121.44  Aligned_cols=127  Identities=10%  Similarity=0.005  Sum_probs=60.0

Q ss_pred             ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 037816          423 NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVV  502 (648)
Q Consensus       423 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~  502 (648)
                      ++.....+...+...|+.++|.+++++..+.  .|+....  ++.+....++.+++.+..+...+.  .+-|+..+..+.
T Consensus       262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lg  335 (398)
T PRK10747        262 QVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLG  335 (398)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHH
Confidence            4444445555555555555555555555442  2333211  122222335555555555555442  223444444555


Q ss_pred             HHhhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 037816          503 DMVGRAGLLIEARSFIERM-PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFL  555 (648)
Q Consensus       503 ~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  555 (648)
                      ..+.+.|++++|.+.|+.. ...|+...+..+..++.+.|+.++|.+++++.+.
T Consensus       336 rl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        336 QLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            5555555555555555544 4445555544555555555555555555554443

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.53  E-value=1.2e-10  Score=110.51  Aligned_cols=255  Identities=11%  Similarity=0.089  Sum_probs=202.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhCC
Q 037816          330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF--TSNPFVNNGLINMYSKCG  407 (648)
Q Consensus       330 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g  407 (648)
                      ..++....+.++++.-.+.....|++.+...-+....+.-...++++|+.+|+++.+...  -.|..+|..++-.-....
T Consensus       234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s  313 (559)
T KOG1155|consen  234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS  313 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence            345666667788888888888888777766666666667788889999999999887741  124566666553322222


Q ss_pred             CHH-HHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHh
Q 037816          408 DLE-DSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT-DVTFLSLLHACSHVGLVNKGMEFLKSM  485 (648)
Q Consensus       408 ~~~-~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~  485 (648)
                      ++. -|..++ .+.+-.+.|..++.+-|+-.++.++|...|++..+.+  |. ...|+.+.+-|....+...|.+-++.+
T Consensus       314 kLs~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN--p~~~~aWTLmGHEyvEmKNt~AAi~sYRrA  390 (559)
T KOG1155|consen  314 KLSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN--PKYLSAWTLMGHEYVEMKNTHAAIESYRRA  390 (559)
T ss_pred             HHHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC--cchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence            221 122222 2223345677777888888999999999999999865  54 556777888899999999999999999


Q ss_pred             HHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcc
Q 037816          486 TEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP  563 (648)
Q Consensus       486 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  563 (648)
                      .+  -.+-|-..|-.|.++|.-.+.+.=|+-.|++. ..+| |+..|.+|..+|.+.++.++|+..|+++...+..+..+
T Consensus       391 vd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~  468 (559)
T KOG1155|consen  391 VD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSA  468 (559)
T ss_pred             Hh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHH
Confidence            86  23448999999999999999999999999998 6666 68999999999999999999999999999988888899


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHh
Q 037816          564 YILMANIYSCSGRWKERAKAIKRMKE  589 (648)
Q Consensus       564 ~~~l~~~~~~~g~~~~A~~~~~~m~~  589 (648)
                      +..++++|.+.++.++|.+.+++-++
T Consensus       469 l~~LakLye~l~d~~eAa~~yek~v~  494 (559)
T KOG1155|consen  469 LVRLAKLYEELKDLNEAAQYYEKYVE  494 (559)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            99999999999999999999998766

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.53  E-value=2.9e-10  Score=116.07  Aligned_cols=572  Identities=12%  Similarity=0.040  Sum_probs=307.4

Q ss_pred             ccccCCcchhHhhHhHHhhccccCCCc-----------------------------cCCCCcCCCcchHHHHHHHHhccC
Q 037816            8 LKLNSNFPFCSSLVSPFITKIIQDPTS-----------------------------STSKLVLDNYVDISRLLSISAKEG   58 (648)
Q Consensus         8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~-----------------------------~~~~~~p~~~~~~~~ll~~~~~~~   58 (648)
                      .++-||-.||-.|+..|++.|+.+.+.                             -++.=.| .+++|..++.+|++.|
T Consensus        19 ~gi~PnRvtyqsLiarYc~~gdieaatif~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep-~aDtyt~Ll~ayr~hG   97 (1088)
T KOG4318|consen   19 SGILPNRVTYQSLIARYCTKGDIEAATIFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEP-LADTYTNLLKAYRIHG   97 (1088)
T ss_pred             hcCCCchhhHHHHHHHHcccCCCccccchhhhhcccccccchhHHHHHhcccccccccCCCCC-chhHHHHHHHHHHhcc
Confidence            356788899999999999886665552                             1222256 8999999999999999


Q ss_pred             CCcchhHHHHHHh---hhcC--CCC------CcC---cCCCCChHHHHHHHHHHHhcCCChhHHHHhhccCC--------
Q 037816           59 HFHLGPSLHASFI---KTFE--PFD------NQN---VYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMP--------  116 (648)
Q Consensus        59 ~~~~a~~~~~~~~---~~~~--~~~------~~~---~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--------  116 (648)
                      |+..-..+-+.+.   ..+.  |.-      -|.   ..+.-||..   ..+.-..-.|-++.+++++..++        
T Consensus        98 Dli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaqllkll~~~Pvsa~~~p~  174 (1088)
T KOG4318|consen   98 DLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLLKLLAKVPVSAWNAPF  174 (1088)
T ss_pred             chHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHHHHHHhhCCcccccchH
Confidence            9866333322222   1110  110      000   000122221   12222222344555555554332        


Q ss_pred             --------------------------CCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccC
Q 037816          117 --------------------------MRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSE  170 (648)
Q Consensus       117 --------------------------~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~  170 (648)
                                                .+++.+|..++.+-.-.|+.+.|..++..|++.|+..+.. -|..|+-+   .+
T Consensus       175 ~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~H-yFwpLl~g---~~  250 (1088)
T KOG4318|consen  175 QVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAH-YFWPLLLG---IN  250 (1088)
T ss_pred             HHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccc-cchhhhhc---Cc
Confidence                                      2467778888888888888888888888888888766666 55555544   77


Q ss_pred             ChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccCCCCcccHHHHHHHHHHCCCc-----hHHHHHH
Q 037816          171 LSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLY-----EEGLKLF  245 (648)
Q Consensus       171 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~-----~~a~~~~  245 (648)
                      +...+..+...|...|+.|+.+|+..-+-.+.+.|....+....+.-.--....+..+.++...+.+.     .-....+
T Consensus       251 ~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~  330 (1088)
T KOG4318|consen  251 AAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGST  330 (1088)
T ss_pred             cchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHh
Confidence            77888888888888888888888887777776655533322221110000011122222221111111     1111111


Q ss_pred             HHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhc--C-CCchhHHHHHHHHHHh------------------
Q 037816          246 VKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLA--L-QSDLCIESALMDMYSK------------------  304 (648)
Q Consensus       246 ~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~-~~~~~~~~~l~~~~~~------------------  304 (648)
                      .+..-.|+.-....|.-... ....|.-+.++++-..+..--  . ..++..+..++.-|.+                  
T Consensus       331 k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls  409 (1088)
T KOG4318|consen  331 KKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLS  409 (1088)
T ss_pred             hHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            11111122222222211111 111233333333333332110  0 1111222222222221                  


Q ss_pred             ----cCCHHHHHHHHHhccC----------------CCccc-----------HHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 037816          305 ----CGSVEDAWQIFEFAEE----------------LDGVS-----------MTVILVGFAQNGFEEEAMQLFVKMVKAG  353 (648)
Q Consensus       305 ----~~~~~~A~~~~~~~~~----------------~~~~~-----------~~~li~~~~~~~~~~~a~~~~~~m~~~~  353 (648)
                          ..+.....++......                +...+           -+.++..++..-+..+++..-++....-
T Consensus       410 ~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~l  489 (1088)
T KOG4318|consen  410 LNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLL  489 (1088)
T ss_pred             hhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                1122222222222211                11111           2334555555555555554444443322


Q ss_pred             CCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHh--CCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCC-----C-hh
Q 037816          354 IEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS--DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR-----N-SV  425 (648)
Q Consensus       354 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~-~~  425 (648)
                      ++   ..|..+|+-++.....+.|..+.++....  .+..+..-+..+.+.+.+.+...++..++.++.+.     + ..
T Consensus       490 f~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~  566 (1088)
T KOG4318|consen  490 FA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAI  566 (1088)
T ss_pred             hh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHH
Confidence            22   67888999999999999999998887643  34566777888999999999999999999888742     1 22


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCC------------------------------CCCHHHHHHHHHHHh--ccC
Q 037816          426 SWNSMIAAFARHGNGFKALELYEEMKLEGV------------------------------EPTDVTFLSLLHACS--HVG  473 (648)
Q Consensus       426 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~------------------------------~p~~~~~~~ll~~~~--~~g  473 (648)
                      +.-.++......|+.+...++.+-+...|+                              +|.+.....+.+.+.  ...
T Consensus       567 ~~f~~lns~a~agqqe~Lkkl~d~lvslgl~etgPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td  646 (1088)
T KOG4318|consen  567 ILFPLLNSGAPAGQQEKLKKLADILVSLGLSETGPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTD  646 (1088)
T ss_pred             HHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhcccceEEEeeccchhhhhhcchHHHHHhcCChHHHHHHHHHHHhhccc
Confidence            334455555666666666666655554442                              222222222322222  112


Q ss_pred             cHHHHHHHHHHhH---H------------hcCCC---------------C---------ChhHHHHHHHHhhhcCCHHHH
Q 037816          474 LVNKGMEFLKSMT---E------------VHRIS---------------P---------RAEHYACVVDMVGRAGLLIEA  514 (648)
Q Consensus       474 ~~~~A~~~~~~~~---~------------~~~~~---------------~---------~~~~~~~l~~~~~~~g~~~~A  514 (648)
                      +++.+..+-....   +            ..|+.               |         .......|+..|.+.|+++.|
T Consensus       647 ~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~erA  726 (1088)
T KOG4318|consen  647 SPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIVPLELLLELTHELGKNDRLLQSYLEEGRIERA  726 (1088)
T ss_pred             cHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCccccccCccccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHH
Confidence            2333222211111   0            00100               0         011233477789999999999


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHHc---CChHHHHHHHHHHHhcCCCCCc---cHHHHHHHHHhcCChHHHHHHHHHHH
Q 037816          515 RSFIERMPVKPDVLVWQALLGACSIH---GDSEMGKYAAEKLFLAQPDSPA---PYILMANIYSCSGRWKERAKAIKRMK  588 (648)
Q Consensus       515 ~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~  588 (648)
                      ..+|.++.+.|...+...|...+.+.   -++.++....+++.+..|..+.   .|.-.+....+....+.|.+.+.+..
T Consensus       727 ~glwnK~QV~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~e  806 (1088)
T KOG4318|consen  727 SGLWNKDQVSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERLE  806 (1088)
T ss_pred             HhHHhhCcCCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhhHHHHHHHHHHHHHHH
Confidence            99999998888888877777776554   3677777777887776665443   33344444445555558889999988


Q ss_pred             hCC
Q 037816          589 EMG  591 (648)
Q Consensus       589 ~~~  591 (648)
                      ++.
T Consensus       807 eq~  809 (1088)
T KOG4318|consen  807 EQL  809 (1088)
T ss_pred             Hcc
Confidence            873

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.53  E-value=1.5e-11  Score=124.44  Aligned_cols=279  Identities=11%  Similarity=0.038  Sum_probs=187.6

Q ss_pred             CCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHH--HHHHHHHHhcCCHHHHH
Q 037816          235 NQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIE--SALMDMYSKCGSVEDAW  312 (648)
Q Consensus       235 ~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~A~  312 (648)
                      .|+++.|.+.+....+..-.| ...|.....+....|+.+.+.+.+..+.+.  .|+....  ......+...|+++.|.
T Consensus        97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al  173 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR  173 (398)
T ss_pred             CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence            466666665555543321111 122333333445566666666666666543  3333222  23356777788888888


Q ss_pred             HHHHhccCC---CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCH-------HHHHHHHHHHhccCChhHHHHHHH
Q 037816          313 QIFEFAEEL---DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDP-------NMVSAVLGVFGVDTSLGLGKQIHS  382 (648)
Q Consensus       313 ~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~  382 (648)
                      +.++.+.+.   ++.....+...|.+.|+|++|.+++..+.+.+..++.       .+|..++.......+.+...++++
T Consensus       174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~  253 (398)
T PRK10747        174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK  253 (398)
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            888777653   4455667778888888888888888888877654322       123333333334445555666666


Q ss_pred             HHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 037816          383 LIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTF  462 (648)
Q Consensus       383 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~  462 (648)
                      .+.+. .+.++.....+...+...|+.++|.+.+++..+.....--.++.+....++.+++++..++..+.. +-|...+
T Consensus       254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~  331 (398)
T PRK10747        254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLW  331 (398)
T ss_pred             hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHH
Confidence            55432 356777888889999999999999999987764333333334455556689999999999988764 3355667


Q ss_pred             HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC
Q 037816          463 LSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM  521 (648)
Q Consensus       463 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  521 (648)
                      ..+...|.+.+++++|.+.|+.+.+   ..|+...+..+...+.+.|+.++|.+++++.
T Consensus       332 l~lgrl~~~~~~~~~A~~~le~al~---~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~  387 (398)
T PRK10747        332 STLGQLLMKHGEWQEASLAFRAALK---QRPDAYDYAWLADALDRLHKPEEAAAMRRDG  387 (398)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            7888889999999999999999976   4788888889999999999999999998875

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.51  E-value=2.9e-09  Score=101.41  Aligned_cols=540  Identities=10%  Similarity=0.048  Sum_probs=366.2

Q ss_pred             CChHHHHHHHHHHHhcCCChhHHHHhhccCCC---CCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHH
Q 037816           86 PNATVIWNSLLSFYLKCDQMRNAVKLFDDMPM---RDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII  162 (648)
Q Consensus        86 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~l  162 (648)
                      ..+...|-.....=...+++..|.++|+....   .+...|--.+..=.++.....|..++++....  -|.....+..-
T Consensus        70 R~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY  147 (677)
T KOG1915|consen   70 RLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKY  147 (677)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHH
Confidence            34556666666666667888999999998873   46667777777778888999999999998765  35554456666


Q ss_pred             HHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccC--CCCcccHHHHHHHHHHCCCchH
Q 037816          163 LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR--VRNVITWTAVISGLVQNQLYEE  240 (648)
Q Consensus       163 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~  240 (648)
                      +..=-..|++..|.++++.-.+  ..|+...|++.|+.-.+.+.++.|..++++..  .|++.+|--....=.+.|+...
T Consensus       148 ~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~  225 (677)
T KOG1915|consen  148 IYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVAL  225 (677)
T ss_pred             HHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHH
Confidence            6666677999999999998875  58999999999999999999999999999875  7899999888888889999999


Q ss_pred             HHHHHHHHHhCCCCCChh----hHHHHHHHhhccCChHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhcCCHHHHHHH-
Q 037816          241 GLKLFVKMHLGLINPNSL----TYLSSVMACSGLQALCEGRQIHGILWKLALQS-DLCIESALMDMYSKCGSVEDAWQI-  314 (648)
Q Consensus       241 a~~~~~~m~~~~~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~-  314 (648)
                      |..+|+...+.  -.|..    .|.+....=.+...++.|.-+++..++.-... ....|..+...=-+-|+.....+. 
T Consensus       226 aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~I  303 (677)
T KOG1915|consen  226 ARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAI  303 (677)
T ss_pred             HHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHH
Confidence            99999988652  12222    33333333345677888888888887763211 134444444444445655444433 


Q ss_pred             -------HHhccCCCcc---cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCH-------HHHHHHHHHH---hccCCh
Q 037816          315 -------FEFAEELDGV---SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDP-------NMVSAVLGVF---GVDTSL  374 (648)
Q Consensus       315 -------~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~ll~~~---~~~~~~  374 (648)
                             ++.+...|+.   +|-..+..--..|+.+...++|++.+.. ++|-.       ..|.-+=-+|   ....+.
T Consensus       304 v~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~  382 (677)
T KOG1915|consen  304 VGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDV  382 (677)
T ss_pred             hhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence                   2333344444   4444566666779999999999999875 45532       1222222222   356789


Q ss_pred             hHHHHHHHHHHHhCCCCchhHHHHHHHHH----HhCCCHHHHHHHHhhcC--CCChhHHHHHHHHHHHcCChHHHHHHHH
Q 037816          375 GLGKQIHSLIIKSDFTSNPFVNNGLINMY----SKCGDLEDSIKVFSRMA--PRNSVSWNSMIAAFARHGNGFKALELYE  448 (648)
Q Consensus       375 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~  448 (648)
                      +.+.++++...+ -+|....++..+--+|    .++.++..|.+++....  -|-..+|...|..=.+.++++.+..+++
T Consensus       383 ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYE  461 (677)
T KOG1915|consen  383 ERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYE  461 (677)
T ss_pred             HHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHH
Confidence            999999999888 3455566666554444    46789999999998876  4666778888888888999999999999


Q ss_pred             HHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCH
Q 037816          449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPDV  527 (648)
Q Consensus       449 ~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~  527 (648)
                      +.++-+ +-|..+|......=...|+.+.|..+|.-+.....+......|.+.|+-=...|.+++|..+++++ ...+..
T Consensus       462 kfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~  540 (677)
T KOG1915|consen  462 KFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHV  540 (677)
T ss_pred             HHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccc
Confidence            999965 336778888887778899999999999999875444445667778888888999999999999998 444555


Q ss_pred             HHHHHHHHHHH-----HcC-----------ChHHHHHHHHHHHhc----CCCCC--ccHHHHHHHHHhcCChHHHHHHHH
Q 037816          528 LVWQALLGACS-----IHG-----------DSEMGKYAAEKLFLA----QPDSP--APYILMANIYSCSGRWKERAKAIK  585 (648)
Q Consensus       528 ~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~~----~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~  585 (648)
                      .+|-+....-.     +.+           ....|..+|+++...    .|...  .......+.-...|...+...+-.
T Consensus       541 kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s  620 (677)
T KOG1915|consen  541 KVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQS  620 (677)
T ss_pred             hHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence            57766654332     233           567888889888642    33221  122222233334455555554444


Q ss_pred             HHHh-----CCCCCCCceeEEEEcCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHh
Q 037816          586 RMKE-----MGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMID  636 (648)
Q Consensus       586 ~m~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~  636 (648)
                      +|.+     ..+..+.|.+  ...+.+.-+...+...+....+-+....+-.++.+
T Consensus       621 ~mPk~vKKrr~~~~edG~~--~~EEy~DYiFPed~~~~~~~K~LeaA~kWK~q~~~  674 (677)
T KOG1915|consen  621 KMPKKVKKRRKIQREDGDT--EYEEYFDYIFPEDASATKNLKILEAAKKWKKQKAK  674 (677)
T ss_pred             hccHHHHhhhhhhcccCch--hHHHHHHhcCccccccCcchHHHHHHHHHHHHHHh
Confidence            4422     1233334421  11111222233333555666666666666555443

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.50  E-value=2.3e-09  Score=102.08  Aligned_cols=447  Identities=13%  Similarity=0.100  Sum_probs=329.0

Q ss_pred             HHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhH
Q 037816          130 FLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSS  209 (648)
Q Consensus       130 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  209 (648)
                      =..++++..|..+|++.+... ..+.. .+..-+..=.+.+.+..|..+++.....-...| ..|-..+..--..|++..
T Consensus        83 Eesq~e~~RARSv~ERALdvd-~r~it-LWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE~LgNi~g  159 (677)
T KOG1915|consen   83 EESQKEIQRARSVFERALDVD-YRNIT-LWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEEMLGNIAG  159 (677)
T ss_pred             HHhHHHHHHHHHHHHHHHhcc-cccch-HHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHHHhcccHH
Confidence            344678889999999998765 23444 677777777888999999999999887532222 344455555567899999


Q ss_pred             HHHHhcccC--CCCcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHh-
Q 037816          210 GRKVFGEMR--VRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL-  286 (648)
Q Consensus       210 A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-  286 (648)
                      |.++|++-.  +|+...|++.|+.=.+-..++.|..+|+..+-  +.|+..+|.--.+.=-+.|.+..+..++....+. 
T Consensus       160 aRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~  237 (677)
T KOG1915|consen  160 ARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFL  237 (677)
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence            999998775  79999999999999999999999999999976  6699999998888889999999999999988764 


Q ss_pred             cC-CCchhHHHHHHHHHHhcCCHHHHHHHHHhccCC-----CcccHHHHHHHHHHcCCH---HHHHHH-----HHHHHHc
Q 037816          287 AL-QSDLCIESALMDMYSKCGSVEDAWQIFEFAEEL-----DGVSMTVILVGFAQNGFE---EEAMQL-----FVKMVKA  352 (648)
Q Consensus       287 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~~~~---~~a~~~-----~~~m~~~  352 (648)
                      |- ..+...+.+....=.++..++.|.-+|+-..+.     ....|..+...=-+-|+.   +.++--     ++.++..
T Consensus       238 ~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~  317 (677)
T KOG1915|consen  238 GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK  317 (677)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence            21 223445555555556677888888888765542     122333333333334443   333322     3344444


Q ss_pred             CCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCch--hHHHHHHHH-----H---HhCCCHHHHHHHHhhcC--
Q 037816          353 GIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNP--FVNNGLINM-----Y---SKCGDLEDSIKVFSRMA--  420 (648)
Q Consensus       353 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~-----~---~~~g~~~~A~~~~~~~~--  420 (648)
                      + +-|-.++-..+..-...|+.+...++|+.++..- ||-.  ..|...|..     +   ....+++.+.++|+...  
T Consensus       318 n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l  395 (677)
T KOG1915|consen  318 N-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL  395 (677)
T ss_pred             C-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            3 5677888888888888999999999999998753 4422  122222221     1   24678888999987654  


Q ss_pred             -CCChhHHHHH----HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-C
Q 037816          421 -PRNSVSWNSM----IAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP-R  494 (648)
Q Consensus       421 -~~~~~~~~~l----~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~  494 (648)
                       +....||.-+    ...-.+..+...|.+++....  |.-|-..+|...|..=.+.++++....++++..+   ..| +
T Consensus       396 IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle---~~Pe~  470 (677)
T KOG1915|consen  396 IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE---FSPEN  470 (677)
T ss_pred             cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh---cChHh
Confidence             3444555443    344456789999999998876  5679999999999999999999999999999986   345 8


Q ss_pred             hhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHH
Q 037816          495 AEHYACVVDMVGRAGLLIEARSFIERMPVKPD----VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI  570 (648)
Q Consensus       495 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  570 (648)
                      ..+|......=...|+.+.|..+|+-.-..|.    ...|.+.|..-...|.+++|..+|+++++..+... ++.+.+..
T Consensus       471 c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~f  549 (677)
T KOG1915|consen  471 CYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKF  549 (677)
T ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHH
Confidence            88999999888999999999999998833442    44566667666788999999999999999887754 66666654


Q ss_pred             HH-----hcC-----------ChHHHHHHHHHHHh
Q 037816          571 YS-----CSG-----------RWKERAKAIKRMKE  589 (648)
Q Consensus       571 ~~-----~~g-----------~~~~A~~~~~~m~~  589 (648)
                      -.     ..|           ....|..+|++...
T Consensus       550 e~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~  584 (677)
T KOG1915|consen  550 EASASEGQEDEDLAELEITDENIKRARKIFERANT  584 (677)
T ss_pred             hccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence            33     334           56778888887644

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.50  E-value=5.4e-12  Score=125.16  Aligned_cols=279  Identities=13%  Similarity=0.061  Sum_probs=222.5

Q ss_pred             CCHHHHHHHHHhccC--CCc-ccHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcCHHHHHHHHHHHhccCChhHHHHH
Q 037816          306 GSVEDAWQIFEFAEE--LDG-VSMTVILVGFAQNGFEEEAMQLFVKMVKAG--IEIDPNMVSAVLGVFGVDTSLGLGKQI  380 (648)
Q Consensus       306 ~~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~  380 (648)
                      -+..+|...|..+.+  .|+ .+...+..+|...+++++|.++|+.+.+..  ..-+..+|.+.+..+-+    +.+...
T Consensus       333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~  408 (638)
T KOG1126|consen  333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY  408 (638)
T ss_pred             HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence            356788888888665  233 344567889999999999999999998753  12356788888876533    222233


Q ss_pred             H-HHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 037816          381 H-SLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR---NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVE  456 (648)
Q Consensus       381 ~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~  456 (648)
                      + +.+.+. -+..+.+|.++..+|.-+++.+.|++.|++...-   ...+|+.+..-+.....+|.|...|+..+.  +.
T Consensus       409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~  485 (638)
T KOG1126|consen  409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VD  485 (638)
T ss_pred             HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CC
Confidence            3 333333 3677899999999999999999999999998754   456788888888889999999999999875  33


Q ss_pred             CC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 037816          457 PT-DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP-RAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQA  532 (648)
Q Consensus       457 p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~  532 (648)
                      |. ...|..+...|.++++++.|.-.|+++.+   +.| +......+...+-+.|+.++|+++++++ ...| |+.+--.
T Consensus       486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~  562 (638)
T KOG1126|consen  486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH  562 (638)
T ss_pred             chhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence            43 34666678889999999999999999975   456 7888888999999999999999999998 4443 4555555


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 037816          533 LLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDK  594 (648)
Q Consensus       533 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~  594 (648)
                      -+..+...+++++|+..++++.+..|++..+|..++..|.+.|+.+.|+.-|--+.+...++
T Consensus       563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg  624 (638)
T KOG1126|consen  563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG  624 (638)
T ss_pred             HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence            66678889999999999999999999999999999999999999999999988887755433

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.49  E-value=6e-12  Score=124.86  Aligned_cols=279  Identities=12%  Similarity=0.102  Sum_probs=216.6

Q ss_pred             ChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC------CCcccHHHHHHHHHHcCCHHHHHHH
Q 037816          272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE------LDGVSMTVILVGFAQNGFEEEAMQL  345 (648)
Q Consensus       272 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~  345 (648)
                      +..+|...|..+... +..+..+...+..+|...+++++|.++|+.+.+      .+...|.+.+..+.+    +-++..
T Consensus       334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~  408 (638)
T KOG1126|consen  334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY  408 (638)
T ss_pred             HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence            455666666663322 233335667788888888899999999888876      255667776655443    222333


Q ss_pred             HH-HHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCCh
Q 037816          346 FV-KMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNS  424 (648)
Q Consensus       346 ~~-~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~  424 (648)
                      +. .+.+. -+-.+.+|..+.++|.-.++.+.|.+.|++.++.+ +-..++|+.+.+-+.....+|.|...|+.....|+
T Consensus       409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~  486 (638)
T KOG1126|consen  409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP  486 (638)
T ss_pred             HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence            22 23332 35667899999999999999999999999988765 44788999999999999999999999999887766


Q ss_pred             hHHHH---HHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHH
Q 037816          425 VSWNS---MIAAFARHGNGFKALELYEEMKLEGVEP-TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP-RAEHYA  499 (648)
Q Consensus       425 ~~~~~---l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~  499 (648)
                      ..||+   |...|.+.++++.|+-.|++..+-+  | +.+....+...+.+.|+.++|+++++++..   +.| |+..--
T Consensus       487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN--P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~---ld~kn~l~~~  561 (638)
T KOG1126|consen  487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN--PSNSVILCHIGRIQHQLKRKDKALQLYEKAIH---LDPKNPLCKY  561 (638)
T ss_pred             hhhHHHHhhhhheeccchhhHHHHHHHhhhcCC--ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh---cCCCCchhHH
Confidence            65554   6678999999999999999999854  6 566777788888999999999999999976   344 666666


Q ss_pred             HHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc
Q 037816          500 CVVDMVGRAGLLIEARSFIERM-PVKPD-VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPA  562 (648)
Q Consensus       500 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~  562 (648)
                      .-+..+...+++++|+..++++ .+.|+ ...+..+...|.+.|+.+.|+..|--+.+++|.-..
T Consensus       562 ~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~  626 (638)
T KOG1126|consen  562 HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ  626 (638)
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence            6777888899999999999999 56676 555777888999999999999999999999997543

>TIGR00540 hemY_coli hemY protein

Probab=99.49  E-value=1.3e-10  Score=118.33  Aligned_cols=220  Identities=10%  Similarity=0.002  Sum_probs=108.1

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHH-------HHHHH
Q 037816          330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN-------GLINM  402 (648)
Q Consensus       330 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~li~~  402 (648)
                      ...+...|+++.|...++.+.+.. +-+...+..+...+...|+++.|.+++..+.+.+..+......       .++..
T Consensus       160 a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~  238 (409)
T TIGR00540       160 TRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDE  238 (409)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence            334444455555555555554443 2233344444444555555555555555555444322221111       11111


Q ss_pred             HHhCCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHhccCcHH
Q 037816          403 YSKCGDLEDSIKVFSRMAP---RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTF---LSLLHACSHVGLVN  476 (648)
Q Consensus       403 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~---~~ll~~~~~~g~~~  476 (648)
                      -......+...+.+....+   .+...+..+...+...|+.++|.+++++..+..  ||....   ....-.....++.+
T Consensus       239 ~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~  316 (409)
T TIGR00540       239 AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNE  316 (409)
T ss_pred             HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChH
Confidence            1112223334444444432   356666666777777777777777777777643  433211   11111123345556


Q ss_pred             HHHHHHHHhHHhcCCCCCh--hHHHHHHHHhhhcCCHHHHHHHHHh--C-CCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 037816          477 KGMEFLKSMTEVHRISPRA--EHYACVVDMVGRAGLLIEARSFIER--M-PVKPDVLVWQALLGACSIHGDSEMGKYAAE  551 (648)
Q Consensus       477 ~A~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~  551 (648)
                      .+.+.+++..+.  .+-++  ....++...+.+.|++++|.+.|+.  . ...|+...+..+...+.+.|+.++|.++++
T Consensus       317 ~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~  394 (409)
T TIGR00540       317 KLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQ  394 (409)
T ss_pred             HHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            666666665542  22233  4455566666666666666666662  2 445666555566666666666666666666


Q ss_pred             HHH
Q 037816          552 KLF  554 (648)
Q Consensus       552 ~~~  554 (648)
                      +.+
T Consensus       395 ~~l  397 (409)
T TIGR00540       395 DSL  397 (409)
T ss_pred             HHH
Confidence            554

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.47  E-value=5.2e-13  Score=128.95  Aligned_cols=255  Identities=18%  Similarity=0.163  Sum_probs=81.9

Q ss_pred             HHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHH-HHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCC
Q 037816          229 ISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLS-SVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGS  307 (648)
Q Consensus       229 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  307 (648)
                      ...+.+.|++++|++++++......+|+...|-. +...+...++.+.|.+.++.+...+.. +...+..++.. ...++
T Consensus        15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~   92 (280)
T PF13429_consen   15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD   92 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence            3344444555555555533322221222222222 222233344455555555544443321 33334444444 45666


Q ss_pred             HHHHHHHHHhccC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcCHHHHHHHHHHHhccCChhHHHHHHHHH
Q 037816          308 VEDAWQIFEFAEE--LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAG-IEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI  384 (648)
Q Consensus       308 ~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~  384 (648)
                      +++|.+++...-+  +++..+..++..+...++++++..+++.+.... .+++...|..+...+.+.|+.++|...++..
T Consensus        93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a  172 (280)
T PF13429_consen   93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA  172 (280)
T ss_dssp             -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            6666666554422  344555566666677777777777777765432 2345555666666666677777777777766


Q ss_pred             HHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH
Q 037816          385 IKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT  461 (648)
Q Consensus       385 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~  461 (648)
                      .+.. |.+..+...++..+...|+.+++.+++....   +.|...+..+..+|...|+.++|+..+++..+.. +.|...
T Consensus       173 l~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~  250 (280)
T PF13429_consen  173 LELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLW  250 (280)
T ss_dssp             HHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHH
T ss_pred             HHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-cccccc
Confidence            6654 3445666666666666676666555554443   3455566666777777777777777777766643 335666


Q ss_pred             HHHHHHHHhccCcHHHHHHHHHHhHH
Q 037816          462 FLSLLHACSHVGLVNKGMEFLKSMTE  487 (648)
Q Consensus       462 ~~~ll~~~~~~g~~~~A~~~~~~~~~  487 (648)
                      ...+..++...|+.++|.++.+++.+
T Consensus       251 ~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  251 LLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             HHHHHHHHT-----------------
T ss_pred             cccccccccccccccccccccccccc
Confidence            66666777777777777776666543

>TIGR00540 hemY_coli hemY protein

Probab=99.45  E-value=9.4e-11  Score=119.29  Aligned_cols=283  Identities=13%  Similarity=0.035  Sum_probs=193.1

Q ss_pred             HCCCchHHHHHHHHHHhCCCCCChh-hHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHH
Q 037816          234 QNQLYEEGLKLFVKMHLGLINPNSL-TYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAW  312 (648)
Q Consensus       234 ~~g~~~~a~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  312 (648)
                      ..|+++.|.+.+.+..+.  .|+.. .+.....+....|+.+.+.+.+....+..-.+...+.......+...|+++.|.
T Consensus        96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al  173 (409)
T TIGR00540        96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR  173 (409)
T ss_pred             hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence            467788888777766543  34432 334445566667888888888877765432222233444577788888899888


Q ss_pred             HHHHhccCC---CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH---hccCChhHHHHHHHHHHH
Q 037816          313 QIFEFAEEL---DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVF---GVDTSLGLGKQIHSLIIK  386 (648)
Q Consensus       313 ~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~---~~~~~~~~a~~~~~~~~~  386 (648)
                      +.++.+.+.   ++.....+...+...|++++|.+.+..+.+.++.+.......-..+.   ...+..+.+.+.+..+.+
T Consensus       174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~  253 (409)
T TIGR00540       174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK  253 (409)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            888888762   55567778888999999999999999998887543332211111111   222222222334444433


Q ss_pred             hC---CCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC--CChhH---HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 037816          387 SD---FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP--RNSVS---WNSMIAAFARHGNGFKALELYEEMKLEGVEPT  458 (648)
Q Consensus       387 ~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~---~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~  458 (648)
                      ..   .+.++..+..+...+...|+.++|.+.+++..+  ||...   ...........++.+.+.+.+++..+.  .|+
T Consensus       254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~  331 (409)
T TIGR00540       254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDD  331 (409)
T ss_pred             HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCC
Confidence            32   124788888999999999999999999998864  33321   122222233457788899999888875  354


Q ss_pred             -H--HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC
Q 037816          459 -D--VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM  521 (648)
Q Consensus       459 -~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  521 (648)
                       .  ....++...|.+.|++++|.+.|+..... ...|+...+..+...+.+.|+.++|.+++++.
T Consensus       332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~-~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~  396 (409)
T TIGR00540       332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAAC-KEQLDANDLAMAADAFDQAGDKAEAAAMRQDS  396 (409)
T ss_pred             ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHh-hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence             4  45667888999999999999999964442 56799988999999999999999999999875

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.44  E-value=6.5e-10  Score=104.10  Aligned_cols=286  Identities=14%  Similarity=0.089  Sum_probs=201.7

Q ss_pred             CCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 037816          235 NQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQI  314 (648)
Q Consensus       235 ~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  314 (648)
                      .|+|.+|.++..+-.+.+-.| ...|..-..+.-..|+.+.+-..+.+.-+..-.++..+.-+........|+.+.|..-
T Consensus        97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~  175 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN  175 (400)
T ss_pred             cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence            578888888877766655433 3345556666677777777777777777664456666666777777777777777766


Q ss_pred             HHhccC---CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCC
Q 037816          315 FEFAEE---LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTS  391 (648)
Q Consensus       315 ~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  391 (648)
                      .+.+.+   .++........+|.+.|+|.....++.+|.+.|.-.++..-.                            .
T Consensus       176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~----------------------------l  227 (400)
T COG3071         176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR----------------------------L  227 (400)
T ss_pred             HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH----------------------------H
Confidence            665544   455666677777778888888888887777776544332100                            0


Q ss_pred             chhHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037816          392 NPFVNNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHA  468 (648)
Q Consensus       392 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~  468 (648)
                      ...+|+.+++-....+..+.-...++..+   +.++..-.+++.-+...|+.++|.++..+..+++..|+    -...-.
T Consensus       228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~  303 (400)
T COG3071         228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIP  303 (400)
T ss_pred             HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHh
Confidence            12344555555555555555555666665   34667777788888889999999999998888876666    122234


Q ss_pred             HhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHH
Q 037816          469 CSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPDVLVWQALLGACSIHGDSEMGK  547 (648)
Q Consensus       469 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~  547 (648)
                      +.+.++...-++..++-.+.  .+.++..+.+|...|.+.+.|.+|.+.|+.. +..|+..+|+-+..++.+.|+.+.|.
T Consensus       304 ~l~~~d~~~l~k~~e~~l~~--h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~  381 (400)
T COG3071         304 RLRPGDPEPLIKAAEKWLKQ--HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAE  381 (400)
T ss_pred             hcCCCCchHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHH
Confidence            56777887777777777764  3345578888889999999999999998877 77888999999999999999999998


Q ss_pred             HHHHHHHh
Q 037816          548 YAAEKLFL  555 (648)
Q Consensus       548 ~~~~~~~~  555 (648)
                      +..++.+.
T Consensus       382 ~~r~e~L~  389 (400)
T COG3071         382 QVRREALL  389 (400)
T ss_pred             HHHHHHHH
Confidence            88888764

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.44  E-value=4.5e-08  Score=97.01  Aligned_cols=549  Identities=14%  Similarity=0.090  Sum_probs=345.5

Q ss_pred             ccccCCcchhHhhHhHHhhccccCCCccCCCCcCCCcchHHHHHHHHhccCCCcchhHHHHHHhhhcCCCCCcCcCCCCC
Q 037816            8 LKLNSNFPFCSSLVSPFITKIIQDPTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPN   87 (648)
Q Consensus         8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   87 (648)
                      +.++++..+|-.+-+.+-++-..--        - =+.-+..-+.....+|++..-+.+|...+..++.         ..
T Consensus        75 k~~~~T~~~~~~vn~c~er~lv~mH--------k-mpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpv---------tq  136 (835)
T KOG2047|consen   75 KHLCPTDPAYESVNNCFERCLVFMH--------K-MPRIWLDYLQFLIKQGLITRTRRTFDRALRALPV---------TQ  136 (835)
T ss_pred             hccCCCChHHHHHHHHHHHHHHHHh--------c-CCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCch---------Hh
Confidence            3446666666665554443311000        0 1234556667778899999999999999998422         22


Q ss_pred             hHHHHHHHHHHHhcCCChhHHHHhhccCCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcC-----CCCCcHhHHHHH
Q 037816           88 ATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG-----FYQLDQASFTII  162 (648)
Q Consensus        88 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~p~~~~~~~~l  162 (648)
                      -..+|.-.+......|-++.+.++++...+-++..-+..|..++..++.++|-+.+.......     ..+++...|..+
T Consensus       137 H~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~el  216 (835)
T KOG2047|consen  137 HDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLEL  216 (835)
T ss_pred             hccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHH
Confidence            346888999999999999999999999887777778899999999999999999998876432     124444467666


Q ss_pred             HHHhhccCChHHHHHHHHHHHHhCC--CCC--hhHHHHHHHHhHhcCChhHHHHHhcccCCC--CcccHHHHHHHHHHC-
Q 037816          163 LSACDRSELSLVSKMIHCLVYLCGY--EEE--VTVGNALITSYFKCGSSSSGRKVFGEMRVR--NVITWTAVISGLVQN-  235 (648)
Q Consensus       163 l~~~~~~~~~~~a~~~~~~~~~~~~--~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~-  235 (648)
                      -.......+.-....+- .+.+.|+  -+|  ...|..|.+-|.+.|.+++|.+++++....  .+.-+..+.++|+.- 
T Consensus       217 cdlis~~p~~~~slnvd-aiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FE  295 (835)
T KOG2047|consen  217 CDLISQNPDKVQSLNVD-AIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFE  295 (835)
T ss_pred             HHHHHhCcchhcccCHH-HHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHH
Confidence            66666554443333332 2223332  234  357899999999999999999999887632  222344444443321 


Q ss_pred             ---------------CC------chHHHHHHHHHHhCCC--------CCChhhHHHHHH-HhhccCChHHHHHHHHHHHH
Q 037816          236 ---------------QL------YEEGLKLFVKMHLGLI--------NPNSLTYLSSVM-ACSGLQALCEGRQIHGILWK  285 (648)
Q Consensus       236 ---------------g~------~~~a~~~~~~m~~~~~--------~p~~~t~~~ll~-~~~~~~~~~~a~~~~~~~~~  285 (648)
                                     |+      ++-...-|+.+...+.        ..|.......++ .-...|+..+....+.+..+
T Consensus       296 E~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~  375 (835)
T KOG2047|consen  296 ESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVK  375 (835)
T ss_pred             HHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHH
Confidence                           11      1222333444333210        011111111111 11234566677777777765


Q ss_pred             hc-----CCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHH-------HHHHHHcCCHHHHHHHHHHHHHcC
Q 037816          286 LA-----LQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVI-------LVGFAQNGFEEEAMQLFVKMVKAG  353 (648)
Q Consensus       286 ~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l-------i~~~~~~~~~~~a~~~~~~m~~~~  353 (648)
                      .-     ...-...|..+.+.|-..|+++.|..+|++..+-+-.+-+-|       ...=.+..+++.|+.+.++.....
T Consensus       376 ~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP  455 (835)
T KOG2047|consen  376 TVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVP  455 (835)
T ss_pred             ccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCC
Confidence            42     111235688899999999999999999999887544443333       344456678888998887765321


Q ss_pred             CC-----------c------CHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHH
Q 037816          354 IE-----------I------DPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVF  416 (648)
Q Consensus       354 ~~-----------p------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  416 (648)
                      -.           +      +...|...+..--..|-++....+++.+.+..+.. +.+.....-.+-...-++++.++|
T Consensus       456 ~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaT-Pqii~NyAmfLEeh~yfeesFk~Y  534 (835)
T KOG2047|consen  456 TNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIAT-PQIIINYAMFLEEHKYFEESFKAY  534 (835)
T ss_pred             CchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhhHHHHHHHHHH
Confidence            11           1      22344445555556778888999999999877533 333333333445666789999999


Q ss_pred             hhcCC----CCh-hHHHHHHHHHHH---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HhccCcHHHHHHHHHHhH
Q 037816          417 SRMAP----RNS-VSWNSMIAAFAR---HGNGFKALELYEEMKLEGVEPTDVTFLSLLHA--CSHVGLVNKGMEFLKSMT  486 (648)
Q Consensus       417 ~~~~~----~~~-~~~~~l~~~~~~---~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~--~~~~g~~~~A~~~~~~~~  486 (648)
                      ++-.+    |++ ..|+..+.-+.+   ....+.|..+|++.++ |.+|...-+..|+-+  =-+.|....|+.+++++.
T Consensus       535 ErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat  613 (835)
T KOG2047|consen  535 ERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT  613 (835)
T ss_pred             HcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            88653    343 467776665554   2468999999999998 677755433333322  245688889999999987


Q ss_pred             HhcCCCC--ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHH---HHHHcCChHHHHHHHHHHHhcCCC-
Q 037816          487 EVHRISP--RAEHYACVVDMVGRAGLLIEARSFIERM-PVKPDVLVWQALLG---ACSIHGDSEMGKYAAEKLFLAQPD-  559 (648)
Q Consensus       487 ~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~---~~~~~g~~~~A~~~~~~~~~~~p~-  559 (648)
                      .  ++++  -...|+..|.--...=-+..-..+|++. ..-||...-...++   .-.+.|..++|..++.-..+..++ 
T Consensus       614 ~--~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr  691 (835)
T KOG2047|consen  614 S--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPR  691 (835)
T ss_pred             h--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCc
Confidence            6  5666  3456777776544333333444455544 33455544433333   235679999999999888877654 


Q ss_pred             -CCccHHHHHHHHHhcCChHH
Q 037816          560 -SPAPYILMANIYSCSGRWKE  579 (648)
Q Consensus       560 -~~~~~~~l~~~~~~~g~~~~  579 (648)
                       ++..|...-..-.+.|+-+.
T Consensus       692 ~~~~fW~twk~FEvrHGnedT  712 (835)
T KOG2047|consen  692 VTTEFWDTWKEFEVRHGNEDT  712 (835)
T ss_pred             CChHHHHHHHHHHHhcCCHHH
Confidence             34566666666667788433

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.43  E-value=3.5e-10  Score=102.58  Aligned_cols=216  Identities=14%  Similarity=0.124  Sum_probs=122.1

Q ss_pred             CCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhc-CCCc--hhHHHHHHHHHHhcCCHHHH
Q 037816          235 NQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLA-LQSD--LCIESALMDMYSKCGSVEDA  311 (648)
Q Consensus       235 ~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~A  311 (648)
                      .+++++|.++|-+|.+. -+.+..+-.++-+.+.+.|..|.|+++.+.+.++. ++.+  ......|..-|...|-+|.|
T Consensus        48 s~Q~dKAvdlF~e~l~~-d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA  126 (389)
T COG2956          48 SNQPDKAVDLFLEMLQE-DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA  126 (389)
T ss_pred             hcCcchHHHHHHHHHhc-CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence            46778888888888662 12233344566667777777777777777776542 2222  22335567778888888888


Q ss_pred             HHHHHhccCCCcc---cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCH----HHHHHHHHHHhccCChhHHHHHHHHH
Q 037816          312 WQIFEFAEELDGV---SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDP----NMVSAVLGVFGVDTSLGLGKQIHSLI  384 (648)
Q Consensus       312 ~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~  384 (648)
                      +++|..+.+.+..   ....|+..|....+|++|++.-+++...+-.+..    ..|.-+...+....+.+.|..++.+.
T Consensus       127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA  206 (389)
T COG2956         127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA  206 (389)
T ss_pred             HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            8888888774333   4455788888888888888888888876654443    23333444444445555555555555


Q ss_pred             HHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCCh----hHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037816          385 IKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNS----VSWNSMIAAFARHGNGFKALELYEEMKL  452 (648)
Q Consensus       385 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~m~~  452 (648)
                      .+.+ +..+..--.+.+.+...|+++.|.+.++.+.+.|+    .+...|..+|...|+.++....+.++.+
T Consensus       207 lqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~  277 (389)
T COG2956         207 LQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME  277 (389)
T ss_pred             HhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            4433 22222223334444444444444444444443322    1233334444444444444444444443

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.40  E-value=2.6e-09  Score=102.32  Aligned_cols=217  Identities=13%  Similarity=0.084  Sum_probs=171.1

Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHH
Q 037816          333 FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDS  412 (648)
Q Consensus       333 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  412 (648)
                      +.-.|+.-.|...|+..+.....++. .|--+..+|....+.++....|+...+.+ +-++.+|..-.+.+.-.+++++|
T Consensus       336 ~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A  413 (606)
T KOG0547|consen  336 HFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA  413 (606)
T ss_pred             hhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence            44568888889999988887544333 26667777888899999999999988877 66777888888888888999999


Q ss_pred             HHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc
Q 037816          413 IKVFSRMAP---RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH  489 (648)
Q Consensus       413 ~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~  489 (648)
                      ..=|++..+   .++..|-.+..+.-+.+++++++..|++..++ ++.-+..|+.....+...++++.|.+.|+...+. 
T Consensus       414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L-  491 (606)
T KOG0547|consen  414 IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL-  491 (606)
T ss_pred             HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh-
Confidence            999998764   35567777777777889999999999999876 4556788999999999999999999999999763 


Q ss_pred             CCCCC---------hhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 037816          490 RISPR---------AEHYACVVDMVGRAGLLIEARSFIERM-PVKPD-VLVWQALLGACSIHGDSEMGKYAAEKLFLA  556 (648)
Q Consensus       490 ~~~~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  556 (648)
                        .|.         +.+...++..- -.+++..|.+++++. .+.|- ...|..|...-.+.|+.++|+++|++...+
T Consensus       492 --E~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l  566 (606)
T KOG0547|consen  492 --EPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL  566 (606)
T ss_pred             --ccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence              332         22223333333 348999999999998 66664 556888999999999999999999998755

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.39  E-value=9.4e-10  Score=99.82  Aligned_cols=298  Identities=12%  Similarity=0.112  Sum_probs=172.5

Q ss_pred             cCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHH-------HHHHHHHHcCCHHHH
Q 037816          270 LQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMT-------VILVGFAQNGFEEEA  342 (648)
Q Consensus       270 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~li~~~~~~~~~~~a  342 (648)
                      +.+.++|.+.|-+|.+.. +.+..+--+|.+.|-+.|.+|.|+++-..+.+....|++       .|..-|...|-++.|
T Consensus        48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA  126 (389)
T COG2956          48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA  126 (389)
T ss_pred             hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence            345566666666665522 233334455666666666666666666655543333322       233445555556666


Q ss_pred             HHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCC
Q 037816          343 MQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR  422 (648)
Q Consensus       343 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  422 (648)
                      ..+|..+.+.+ ..-....-.|+..|-...+|++|.+.-.++.+.+-.+...-   +                       
T Consensus       127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e---I-----------------------  179 (389)
T COG2956         127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE---I-----------------------  179 (389)
T ss_pred             HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH---H-----------------------
Confidence            66665555433 22223334444444444444444444444443332211100   0                       


Q ss_pred             ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 037816          423 NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD-VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV  501 (648)
Q Consensus       423 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l  501 (648)
                       ...|.-|...+....+.+.|..++.+..+.+  |+. ..-..+.+.....|+++.|.+.++.+.+. +..--+.+...|
T Consensus       180 -AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L  255 (389)
T COG2956         180 -AQFYCELAQQALASSDVDRARELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEML  255 (389)
T ss_pred             -HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHH
Confidence             1234445555556677888888888877754  432 23334556677888888888888888775 555567778888


Q ss_pred             HHHhhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHH-HH--hcCCh
Q 037816          502 VDMVGRAGLLIEARSFIERM-PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI-YS--CSGRW  577 (648)
Q Consensus       502 ~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~--~~g~~  577 (648)
                      ..+|...|+.++...++.++ ...+....-..+...-....-.+.|...+.+-+...|.-. .+..++.. ..  .-|++
T Consensus       256 ~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~-gf~rl~~~~l~daeeg~~  334 (389)
T COG2956         256 YECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMR-GFHRLMDYHLADAEEGRA  334 (389)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHH-HHHHHHHhhhccccccch
Confidence            88888888888888888777 4444444444455544555566777777777777777653 44444443 33  33568


Q ss_pred             HHHHHHHHHHHhCCCCCCCceeE
Q 037816          578 KERAKAIKRMKEMGVDKETGISW  600 (648)
Q Consensus       578 ~~A~~~~~~m~~~~~~~~~~~~~  600 (648)
                      .+....+++|....++..+....
T Consensus       335 k~sL~~lr~mvge~l~~~~~YRC  357 (389)
T COG2956         335 KESLDLLRDMVGEQLRRKPRYRC  357 (389)
T ss_pred             hhhHHHHHHHHHHHHhhcCCcee
Confidence            88888888888877766664333

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.39  E-value=1.2e-10  Score=109.52  Aligned_cols=199  Identities=13%  Similarity=0.093  Sum_probs=165.8

Q ss_pred             CchhHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037816          391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLH  467 (648)
Q Consensus       391 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~  467 (648)
                      .....+..+...+...|++++|...+++..   +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus        29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~  107 (234)
T TIGR02521        29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT  107 (234)
T ss_pred             cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence            335667778888999999999999998765   2356678888889999999999999999998864 345667778888


Q ss_pred             HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHH
Q 037816          468 ACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEM  545 (648)
Q Consensus       468 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~  545 (648)
                      .+...|++++|.+.++++............+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++
T Consensus       108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  187 (234)
T TIGR02521       108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD  187 (234)
T ss_pred             HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence            899999999999999999874222335567778889999999999999999988 4444 46678888899999999999


Q ss_pred             HHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816          546 GKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       546 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  590 (648)
                      |...++++.+..|.++..+..++.++...|+.++|..+.+.+...
T Consensus       188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  232 (234)
T TIGR02521       188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL  232 (234)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            999999999888888888889999999999999999998887653

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.35  E-value=2.7e-09  Score=100.06  Aligned_cols=278  Identities=10%  Similarity=0.080  Sum_probs=196.9

Q ss_pred             cCCHHHHHHHHHhccCC---CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHH
Q 037816          305 CGSVEDAWQIFEFAEEL---DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIH  381 (648)
Q Consensus       305 ~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~  381 (648)
                      .|++.+|+++..+-.+.   ....|..-..+-.+.|+.+.+-.++.+..+.--.++...+.+........|+.+.|..-.
T Consensus        97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v  176 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV  176 (400)
T ss_pred             cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence            46666666666654432   222333444455666777777777777766533445555555566666777777777777


Q ss_pred             HHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCC-----------ChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 037816          382 SLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR-----------NSVSWNSMIAAFARHGNGFKALELYEEM  450 (648)
Q Consensus       382 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~m  450 (648)
                      ..+.+.+ +-++.+.....++|.+.|++.....++..+.+.           -..+|+.++.-....+..+.-...|++.
T Consensus       177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~  255 (400)
T COG3071         177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ  255 (400)
T ss_pred             HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence            7777665 556667777778888888888888888777643           1246777777766666666666677766


Q ss_pred             HHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHH
Q 037816          451 KLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM--PVKPDVL  528 (648)
Q Consensus       451 ~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~  528 (648)
                      -.. .+.++..-..++.-+.+.|+.++|.++..+..++ +..|+.   ..+ -...+-++.+.-++..+..  ....++.
T Consensus       256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L---~~~-~~~l~~~d~~~l~k~~e~~l~~h~~~p~  329 (400)
T COG3071         256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRL---CRL-IPRLRPGDPEPLIKAAEKWLKQHPEDPL  329 (400)
T ss_pred             cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhH---HHH-HhhcCCCCchHHHHHHHHHHHhCCCChh
Confidence            543 4566777778888899999999999999999886 777762   222 2344556665555555444  1222347


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816          529 VWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       529 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  590 (648)
                      .+.+|...|.+.+.+.+|..+++.+++..|. ...|..++.++...|+..+|.+..++....
T Consensus       330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~  390 (400)
T COG3071         330 LLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLL  390 (400)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            7889999999999999999999999998887 489999999999999999999999987743

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.35  E-value=1e-07  Score=94.64  Aligned_cols=293  Identities=14%  Similarity=0.100  Sum_probs=164.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHHhccCChhHHHHHHHHHHHhC-----------CCC
Q 037816          326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEID---PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD-----------FTS  391 (648)
Q Consensus       326 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----------~~~  391 (648)
                      |..+...|-.+|+.+.|..+|++..+-..+.-   ..+|......-.+..+++.|..+++.+....           .++
T Consensus       390 w~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pv  469 (835)
T KOG2047|consen  390 WVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPV  469 (835)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcH
Confidence            55566666667777777777766655332211   2233333333345555666666655543211           111


Q ss_pred             ------chhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHH---HHHHHcCChHHHHHHHHHHHHcCCCCCHH-H
Q 037816          392 ------NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMI---AAFARHGNGFKALELYEEMKLEGVEPTDV-T  461 (648)
Q Consensus       392 ------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~  461 (648)
                            +..+|..+++.--..|-++....+|+++..--+.|=..++   ..+-.+.-++++.+++++-...=-.|+.. .
T Consensus       470 Q~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~di  549 (835)
T KOG2047|consen  470 QARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDI  549 (835)
T ss_pred             HHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHH
Confidence                  1223333344444455666666666665432211111111   12233444666766666655443345543 4


Q ss_pred             HHHHHHHHh---ccCcHHHHHHHHHHhHHhcCCCCCh--hHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCC--HHHHHH
Q 037816          462 FLSLLHACS---HVGLVNKGMEFLKSMTEVHRISPRA--EHYACVVDMVGRAGLLIEARSFIERM--PVKPD--VLVWQA  532 (648)
Q Consensus       462 ~~~ll~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~  532 (648)
                      |+..+.-+.   ....++.|..+|++..+  +.+|..  ..|-.....=-+.|-...|++++++.  ++++.  ...|+.
T Consensus       550 W~tYLtkfi~rygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni  627 (835)
T KOG2047|consen  550 WNTYLTKFIKRYGGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNI  627 (835)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            555554442   23478999999999988  777632  22333333334568888999999998  44443  455777


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHhcCCCCCc--cHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-CceeEEEEcCEEEE
Q 037816          533 LLGACSIHGDSEMGKYAAEKLFLAQPDSPA--PYILMANIYSCSGRWKERAKAIKRMKEMGVDKE-TGISWIEIEKQVHS  609 (648)
Q Consensus       533 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~  609 (648)
                      .|.-....=-+..-..+|+++++.-|++..  .....++.-.+.|..+.|..++..-.+- ..|. .+-.|       .+
T Consensus       628 ~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~-~dPr~~~~fW-------~t  699 (835)
T KOG2047|consen  628 YIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI-CDPRVTTEFW-------DT  699 (835)
T ss_pred             HHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc-CCCcCChHHH-------HH
Confidence            776555544455667899999998887532  2334566677889999999998775543 2232 23334       22


Q ss_pred             EEeCCCCCCChHHHHHHHH
Q 037816          610 FVVDDKMHPQADTIHGVLA  628 (648)
Q Consensus       610 ~~~~~~~~~~~~~~~~~~~  628 (648)
                      |-.=+..|.+...+.++|+
T Consensus       700 wk~FEvrHGnedT~keMLR  718 (835)
T KOG2047|consen  700 WKEFEVRHGNEDTYKEMLR  718 (835)
T ss_pred             HHHHHHhcCCHHHHHHHHH
Confidence            2222457777777777775

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.32  E-value=1.8e-08  Score=102.15  Aligned_cols=400  Identities=13%  Similarity=0.073  Sum_probs=267.7

Q ss_pred             hCCCCChhHHHHHHHHhHhcCChhHHHHHhcccCC---CCcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCC-hhhH
Q 037816          185 CGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV---RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPN-SLTY  260 (648)
Q Consensus       185 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~t~  260 (648)
                      ..+..|..+|..|.-+..+.|+++.+.+.|++...   .....|+.+-..+...|.-..|+.+++.-....-.|+ ...+
T Consensus       317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~  396 (799)
T KOG4162|consen  317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL  396 (799)
T ss_pred             hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence            44677889999999999999999999999998763   2445788888999999999999999988755433343 3344


Q ss_pred             HHHHHHhh-ccCChHHHHHHHHHHHHh--cC--CCchhHHHHHHHHHHhc-----------CCHHHHHHHHHhccCC---
Q 037816          261 LSSVMACS-GLQALCEGRQIHGILWKL--AL--QSDLCIESALMDMYSKC-----------GSVEDAWQIFEFAEEL---  321 (648)
Q Consensus       261 ~~ll~~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~---  321 (648)
                      ...-..|. +.+..+++..+...+...  +.  ......|..+.-+|...           ....++.+.+++..+.   
T Consensus       397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~  476 (799)
T KOG4162|consen  397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT  476 (799)
T ss_pred             HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence            44444453 346777777776666652  21  22333444444444432           1234556666666543   


Q ss_pred             CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHH-hCCCCchhHHHHHH
Q 037816          322 DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIK-SDFTSNPFVNNGLI  400 (648)
Q Consensus       322 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li  400 (648)
                      |+.+.-.+.--|+..++.+.|++..++..+.+-.-+...|..+.-.+...+++..|+.+.+.... .|.  |-.....-+
T Consensus       477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~~~  554 (799)
T KOG4162|consen  477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMDGKI  554 (799)
T ss_pred             CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchhhh
Confidence            33333333445778899999999999999987678888898888889999999999999877653 321  100000111


Q ss_pred             HHHHhCCCHHHHHHHHhhc--------------------------C----CC--ChhHHHHHHHHHHHcCChHHHHHHHH
Q 037816          401 NMYSKCGDLEDSIKVFSRM--------------------------A----PR--NSVSWNSMIAAFARHGNGFKALELYE  448 (648)
Q Consensus       401 ~~~~~~g~~~~A~~~~~~~--------------------------~----~~--~~~~~~~l~~~~~~~~~~~~A~~~~~  448 (648)
                      +.-...++.+++......+                          .    ++  .+.++..+..-....  ...+..-..
T Consensus       555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~--~~~~~se~~  632 (799)
T KOG4162|consen  555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQ--LKSAGSELK  632 (799)
T ss_pred             hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhh--hhhcccccc
Confidence            1111233444433322111                          1    00  122232222211111  111100000


Q ss_pred             HHHHcCCCC--CH------HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHh
Q 037816          449 EMKLEGVEP--TD------VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIER  520 (648)
Q Consensus       449 ~m~~~~~~p--~~------~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  520 (648)
                       |...-+.|  +.      ..|......+...+..++|...+.++.+  ..+.....|......+...|.+++|.+.|..
T Consensus       633 -Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~  709 (799)
T KOG4162|consen  633 -LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLV  709 (799)
T ss_pred             -cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHH
Confidence             22111222  21      2244455667888999999999999976  3455788888888999999999999999988


Q ss_pred             C-CCCCC-HHHHHHHHHHHHHcCChHHHHH--HHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037816          521 M-PVKPD-VLVWQALLGACSIHGDSEMGKY--AAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMG  591 (648)
Q Consensus       521 ~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  591 (648)
                      . .+.|+ +.+..++...+.+.|+...|..  ++..+++.+|.++.+|..++.++.+.|+.++|.+.|+...+..
T Consensus       710 Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe  784 (799)
T KOG4162|consen  710 ALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE  784 (799)
T ss_pred             HHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence            7 67775 7788999999999999888888  9999999999999999999999999999999999999987653

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.31  E-value=4.2e-08  Score=96.49  Aligned_cols=377  Identities=12%  Similarity=0.110  Sum_probs=211.0

Q ss_pred             hcCChhHHHHHhcccCCCCcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCC-hhhHHHHHHHhhccCChHHHHHHHH
Q 037816          203 KCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPN-SLTYLSSVMACSGLQALCEGRQIHG  281 (648)
Q Consensus       203 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~  281 (648)
                      +.+..++|+..++.....+..+...-...+.+.|++++|+++|+.+.+.+..-- ...-..++.+-...       . -.
T Consensus        91 rlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l-------~-~~  162 (652)
T KOG2376|consen   91 RLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL-------Q-VQ  162 (652)
T ss_pred             HcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh-------h-HH
Confidence            566777777777744444444555555667777777777777777765443211 11111111111000       0 00


Q ss_pred             HHHHhcCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHhcc--------CCCcc----------cHHHHHHHHHHcCCHHH
Q 037816          282 ILWKLALQSD--LCIESALMDMYSKCGSVEDAWQIFEFAE--------ELDGV----------SMTVILVGFAQNGFEEE  341 (648)
Q Consensus       282 ~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------~~~~~----------~~~~li~~~~~~~~~~~  341 (648)
                      .+......|+  -..+-.....++..|++.+|+++++...        +.|..          .-..|.-.+...|+..+
T Consensus       163 ~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e  242 (652)
T KOG2376|consen  163 LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE  242 (652)
T ss_pred             HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence            1222222221  1111223445566778888887777661        11111          11234456778899999


Q ss_pred             HHHHHHHHHHcCCCcCHHHHHHHH---HHHhccCChhH--HHHHHHH-----------HHHhCCCCchhHHHHHHHHHHh
Q 037816          342 AMQLFVKMVKAGIEIDPNMVSAVL---GVFGVDTSLGL--GKQIHSL-----------IIKSDFTSNPFVNNGLINMYSK  405 (648)
Q Consensus       342 a~~~~~~m~~~~~~p~~~~~~~ll---~~~~~~~~~~~--a~~~~~~-----------~~~~~~~~~~~~~~~li~~~~~  405 (648)
                      |..++...+... ++|........   .++....++-.  +...++.           +....-......-+.++..|  
T Consensus       243 a~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--  319 (652)
T KOG2376|consen  243 ASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--  319 (652)
T ss_pred             HHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            999999998875 44443322222   22222222111  1111111           11111011111222333333  


Q ss_pred             CCCHHHHHHHHhhcCCC-ChhHHHHHHHHHHH--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 037816          406 CGDLEDSIKVFSRMAPR-NSVSWNSMIAAFAR--HGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFL  482 (648)
Q Consensus       406 ~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~--~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~  482 (648)
                      .+..+.+.++....... ....+.+++....+  ...+..|.+++...-+....-........+......|+++.|.+++
T Consensus       320 tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il  399 (652)
T KOG2376|consen  320 TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEIL  399 (652)
T ss_pred             hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            35566777777666643 24445555544332  3357788888888776541122345555667778999999999999


Q ss_pred             H--------HhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-----CCCCCHH----HHHHHHHHHHHcCChHH
Q 037816          483 K--------SMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-----PVKPDVL----VWQALLGACSIHGDSEM  545 (648)
Q Consensus       483 ~--------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~~~----~~~~l~~~~~~~g~~~~  545 (648)
                      .        .+.+   +...+.+...+...|.+.++-+-|..++.+.     ...+...    ++.-+...-.+.|+.++
T Consensus       400 ~~~~~~~~ss~~~---~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~e  476 (652)
T KOG2376|consen  400 SLFLESWKSSILE---AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEE  476 (652)
T ss_pred             HHHhhhhhhhhhh---hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHH
Confidence            9        4432   3446677788888899988877777777655     1122222    33333444567899999


Q ss_pred             HHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcee
Q 037816          546 GKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGIS  599 (648)
Q Consensus       546 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~  599 (648)
                      |..+++++++.+|++..+...++.+|++. +.+.|..+-++     +.|..+..
T Consensus       477 a~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~-----L~p~~~l~  524 (652)
T KOG2376|consen  477 ASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKK-----LPPLKGLK  524 (652)
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhc-----CCCcccch
Confidence            99999999999999999999999999774 56677665444     44554444

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.29  E-value=3.2e-09  Score=97.43  Aligned_cols=443  Identities=10%  Similarity=0.062  Sum_probs=219.6

Q ss_pred             HHHHhccCCCcchhHHHHHHhhhcCCCCCcCcCCCCChHHHHHHHHHHHhcCCChhHHHHhhccCCC---CCcccHHHHH
Q 037816           51 LSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPM---RDTVSWNTMV  127 (648)
Q Consensus        51 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~y~~li  127 (648)
                      +.-+...+|+..|..+++.-...  +-        .....+---+..++.+.|++++|...+..+.+   ++...+-.|.
T Consensus        29 Ledfls~rDytGAislLefk~~~--~~--------EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLA   98 (557)
T KOG3785|consen   29 LEDFLSNRDYTGAISLLEFKLNL--DR--------EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLA   98 (557)
T ss_pred             HHHHHhcccchhHHHHHHHhhcc--ch--------hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHH
Confidence            55666778889999888877654  32        22223333455677888999999999887763   4555666676


Q ss_pred             HHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCh
Q 037816          128 SGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS  207 (648)
Q Consensus       128 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  207 (648)
                      -++.-.|.+.+|..+-...      |+.+..-..++...-+.++.+....++..+...     .+---+|.+..--.-.+
T Consensus        99 cc~FyLg~Y~eA~~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HY  167 (557)
T KOG3785|consen   99 CCKFYLGQYIEAKSIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHY  167 (557)
T ss_pred             HHHHHHHHHHHHHHHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHH
Confidence            6777778888888776654      444423344455555667777666666655431     22223344444444567


Q ss_pred             hHHHHHhcccCC--CCcccHHHH-HHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhh--ccCChHHHHHHHHH
Q 037816          208 SSGRKVFGEMRV--RNVITWTAV-ISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS--GLQALCEGRQIHGI  282 (648)
Q Consensus       208 ~~A~~~~~~~~~--~~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~  282 (648)
                      ++|.+++.++..  |+-...|.- .-.|.+..-++-+.++++-..+.  .||. |+..-+.+|.  +.=+-..|+.-.+.
T Consensus       168 QeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdS-tiA~NLkacn~fRl~ngr~ae~E~k~  244 (557)
T KOG3785|consen  168 QEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDS-TIAKNLKACNLFRLINGRTAEDEKKE  244 (557)
T ss_pred             HHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCc-HHHHHHHHHHHhhhhccchhHHHHHH
Confidence            888888888764  333344433 34556667777777777776542  2443 2222233332  22111222222222


Q ss_pred             HHHhcCCCchhHHHHHHHHHHhc-----CCHHHHHHHHHhccCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcC
Q 037816          283 LWKLALQSDLCIESALMDMYSKC-----GSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEID  357 (648)
Q Consensus       283 ~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~  357 (648)
                      +.+.+-..     -..+.-.++.     .+-+.|++++-.+.+.=+..--.|+--|.++++..+|..+.+++..  ..|-
T Consensus       245 ladN~~~~-----~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~  317 (557)
T KOG3785|consen  245 LADNIDQE-----YPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPY  317 (557)
T ss_pred             HHhccccc-----chhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChH
Confidence            22222110     0111222222     1224455554444333333333445556777777777777665521  1222


Q ss_pred             HHHHHHHHHHHh-----ccCChhHHHHHHHHHHHhCCCCchh-HHHHHHHHHHhCCCHHHHHHHHhhcCC----CChhHH
Q 037816          358 PNMVSAVLGVFG-----VDTSLGLGKQIHSLIIKSDFTSNPF-VNNGLINMYSKCGDLEDSIKVFSRMAP----RNSVSW  427 (648)
Q Consensus       358 ~~~~~~ll~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~  427 (648)
                      ......+..+..     ....+..|.+.|+..-.++..-|+. --.++...+.-..++++++-.+..+..    .|...+
T Consensus       318 EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~  397 (557)
T KOG3785|consen  318 EYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL  397 (557)
T ss_pred             HHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh
Confidence            222222222111     1112344444444443333322221 122333444444455555555555442    233333


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHhccCcHHHHHHHHHHhHHhcCCCCChh-HHHHHHHHh
Q 037816          428 NSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLS-LLHACSHVGLVNKGMEFLKSMTEVHRISPRAE-HYACVVDMV  505 (648)
Q Consensus       428 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~  505 (648)
                      | +..+++..|.+.+|+++|-+...-.++ |..+|.+ |.++|.+.+.++.|+.++-++    +-+.+.. ....+..-|
T Consensus       398 N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~----~t~~e~fsLLqlIAn~C  471 (557)
T KOG3785|consen  398 N-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT----NTPSERFSLLQLIANDC  471 (557)
T ss_pred             H-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc----CCchhHHHHHHHHHHHH
Confidence            3 455555666666666665554432222 2333333 334555666666665555443    1122222 222333445


Q ss_pred             hhcCCHHHHHHHHHhC-CCCCCHHHH
Q 037816          506 GRAGLLIEARSFIERM-PVKPDVLVW  530 (648)
Q Consensus       506 ~~~g~~~~A~~~~~~~-~~~p~~~~~  530 (648)
                      .+++.+--|.+.|+.+ ...|++..|
T Consensus       472 Yk~~eFyyaaKAFd~lE~lDP~pEnW  497 (557)
T KOG3785|consen  472 YKANEFYYAAKAFDELEILDPTPENW  497 (557)
T ss_pred             HHHHHHHHHHHhhhHHHccCCCcccc
Confidence            5555555555555555 344555544

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.28  E-value=8.9e-08  Score=88.14  Aligned_cols=180  Identities=8%  Similarity=0.014  Sum_probs=88.0

Q ss_pred             HHHHhcCCChhHHHHhhccCCCC---Cc-ccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCC
Q 037816           96 LSFYLKCDQMRNAVKLFDDMPMR---DT-VSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSEL  171 (648)
Q Consensus        96 i~~~~~~g~~~~A~~~~~~~~~~---~~-~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~  171 (648)
                      +.-+....++..|+.+++.-..-   .. .+---+..++.+.|++++|+..|.-+.+.. .|+.. ....|.-+..-.|.
T Consensus        29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~e-l~vnLAcc~FyLg~  106 (557)
T KOG3785|consen   29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAE-LGVNLACCKFYLGQ  106 (557)
T ss_pred             HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcc-cchhHHHHHHHHHH
Confidence            34444567777777776654411   11 112223445666777777777777766543 34444 55555555555566


Q ss_pred             hHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccCCCCcccHHHHHHHHHHCCCchHHHHHHHHHHhC
Q 037816          172 SLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLG  251 (648)
Q Consensus       172 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  251 (648)
                      +.+|+.+-+..     +.++..-..|++.-.+.++-++-..+-+.+.... .---+|.......-.+++|+++|++....
T Consensus       107 Y~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~d  180 (557)
T KOG3785|consen  107 YIEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQD  180 (557)
T ss_pred             HHHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            66666554332     2233333344444555566555555544443221 11122233333334566777777666542


Q ss_pred             CCCCChhhHHHHH-HHhhccCChHHHHHHHHHHHH
Q 037816          252 LINPNSLTYLSSV-MACSGLQALCEGRQIHGILWK  285 (648)
Q Consensus       252 ~~~p~~~t~~~ll-~~~~~~~~~~~a~~~~~~~~~  285 (648)
                      +  |+-...+.-+ -++.+..-++-+.++++..++
T Consensus       181 n--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~  213 (557)
T KOG3785|consen  181 N--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLR  213 (557)
T ss_pred             C--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence            2  3333333222 233445555555555554443

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.28  E-value=4.3e-08  Score=92.06  Aligned_cols=304  Identities=11%  Similarity=0.009  Sum_probs=204.8

Q ss_pred             CCChhhHHHHHHHhhcc--CChHHHHHHHHHHHH-hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHH--
Q 037816          254 NPNSLTYLSSVMACSGL--QALCEGRQIHGILWK-LALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTV--  328 (648)
Q Consensus       254 ~p~~~t~~~ll~~~~~~--~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--  328 (648)
                      .|...+....+.+++..  ++-..+...+-.+.. .-++.|......+..++...|+.++|+..|+...--|+.+...  
T Consensus       191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD  270 (564)
T KOG1174|consen  191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMD  270 (564)
T ss_pred             CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHH
Confidence            34444444555554433  333333333333333 2356778888888999999999999999998877655544333  


Q ss_pred             -HHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC
Q 037816          329 -ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCG  407 (648)
Q Consensus       329 -li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  407 (648)
                       ..-.+...|+.+....+...+.... .-+...|-.-.......+++..|..+-.+.++.+ +.+...+-.-..++...|
T Consensus       271 ~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~  348 (564)
T KOG1174|consen  271 LYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALE  348 (564)
T ss_pred             HHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhcc
Confidence             2334567788887777777765532 1222223223333445667788888777777654 344555555566777888


Q ss_pred             CHHHHHHHHhhcC--C-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHh-ccCcHHHHHHHH
Q 037816          408 DLEDSIKVFSRMA--P-RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL-HACS-HVGLVNKGMEFL  482 (648)
Q Consensus       408 ~~~~A~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll-~~~~-~~g~~~~A~~~~  482 (648)
                      +.++|.--|+...  . -+...|..|+.+|...|++.+|.-.-....+. ++.+..+...+. ..|. ...--++|..++
T Consensus       349 R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~  427 (564)
T KOG1174|consen  349 RHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFA  427 (564)
T ss_pred             chHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHH
Confidence            8888888887654  3 47788999999999999998888877765553 345666665552 3332 223346788888


Q ss_pred             HHhHHhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 037816          483 KSMTEVHRISP-RAEHYACVVDMVGRAGLLIEARSFIERM-PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS  560 (648)
Q Consensus       483 ~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~  560 (648)
                      ++..+   +.| -....+.+...+...|..++++.++++. ...||....+.|...+...+.+.+|...|..+++.+|.+
T Consensus       428 ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~  504 (564)
T KOG1174|consen  428 EKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS  504 (564)
T ss_pred             Hhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence            87754   355 3556677788888889999999988887 777888888888888888889999999999999998887


Q ss_pred             Ccc
Q 037816          561 PAP  563 (648)
Q Consensus       561 ~~~  563 (648)
                      ..+
T Consensus       505 ~~s  507 (564)
T KOG1174|consen  505 KRT  507 (564)
T ss_pred             hHH
Confidence            543

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.28  E-value=2.4e-08  Score=97.74  Aligned_cols=471  Identities=10%  Similarity=-0.012  Sum_probs=217.5

Q ss_pred             cCCCCcCCCcchHHHHHHHHhccCCCcchhHHHHHHhhhcCCCCCcCcCCCCChHHHHHHHHHHHhcCCChhHHHHhhcc
Q 037816           35 STSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDD  114 (648)
Q Consensus        35 ~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  114 (648)
                      +-.|+.- ||...--+.+++.-.|+...|..+.+.-.-.            ..|.....-...++.+..++++|..++..
T Consensus        41 kV~~l~~-dp~d~~~~aq~l~~~~~y~ra~~lit~~~le------------~~d~~cryL~~~~l~~lk~~~~al~vl~~  107 (611)
T KOG1173|consen   41 KVAGLTN-DPADIYWLAQVLYLGRQYERAAHLITTYKLE------------KRDIACRYLAAKCLVKLKEWDQALLVLGR  107 (611)
T ss_pred             HHHhccC-ChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh------------hhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            5556665 7777778888888889999988888777544            56778888888899999999999999984


Q ss_pred             CCC-CCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhH
Q 037816          115 MPM-RDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTV  193 (648)
Q Consensus       115 ~~~-~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  193 (648)
                      -+. .++..|..-=.  ...-..+.+.+....-.+.+       .+..--+.+...++.+.|+..+...+..    |...
T Consensus       108 ~~~~~~~f~yy~~~~--~~~l~~n~~~~~~~~~~ess-------ic~lRgk~y~al~n~~~ar~~Y~~Al~~----D~~c  174 (611)
T KOG1173|consen  108 GHVETNPFSYYEKDA--ANTLELNSAGEDLMINLESS-------ICYLRGKVYVALDNREEARDKYKEALLA----DAKC  174 (611)
T ss_pred             cchhhcchhhcchhh--hceeccCcccccccccchhc-------eeeeeeehhhhhccHHHHHHHHHHHHhc----chhh
Confidence            421 01111100000  00000011110000000001       0111111223333444444444443322    1222


Q ss_pred             HHHHHHHhHhc-CChhHHHHHhcccC-----CCCcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHh
Q 037816          194 GNALITSYFKC-GSSSSGRKVFGEMR-----VRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMAC  267 (648)
Q Consensus       194 ~~~li~~~~~~-g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~  267 (648)
                      +.++...-... =-.++-..+|+...     ..++.....+.........-+.....-.+-.-.+..-+......-..-|
T Consensus       175 ~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~  254 (611)
T KOG1173|consen  175 FEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRL  254 (611)
T ss_pred             HHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHH
Confidence            22111111000 00011122222211     0011111111110000000000000000000011222333333334444


Q ss_pred             hccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHHcCCHHHHHH
Q 037816          268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE---LDGVSMTVILVGFAQNGFEEEAMQ  344 (648)
Q Consensus       268 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~  344 (648)
                      -..+++.+..++.+.+.+.. ++....+..-|.++...|+..+-..+=.++.+   ..+.+|-++.--|...|+..+|.+
T Consensus       255 y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARr  333 (611)
T KOG1173|consen  255 YYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARR  333 (611)
T ss_pred             HHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHH
Confidence            45556666666665555543 33333333334444444444433333333332   133445555555555555555555


Q ss_pred             HHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC---
Q 037816          345 LFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP---  421 (648)
Q Consensus       345 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---  421 (648)
                      .|.+....                                   + +.-...|-...+.|.-.|.-++|+..+....+   
T Consensus       334 y~SKat~l-----------------------------------D-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~  377 (611)
T KOG1173|consen  334 YFSKATTL-----------------------------------D-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMP  377 (611)
T ss_pred             HHHHHhhc-----------------------------------C-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhcc
Confidence            55544332                                   1 11122344444444555555555444433221   


Q ss_pred             CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc-CCC----CCh
Q 037816          422 RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP-TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH-RIS----PRA  495 (648)
Q Consensus       422 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-~~~----~~~  495 (648)
                      .....+--+..-|.+.++.+-|.++|.+...  +-| |+..++-+.-.....+.+.+|..+|+.....- .+.    -..
T Consensus       378 G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~  455 (611)
T KOG1173|consen  378 GCHLPSLYLGMEYMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWE  455 (611)
T ss_pred             CCcchHHHHHHHHHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchh
Confidence            1111122233345556666666666666655  334 44555555545555666677777666665210 011    123


Q ss_pred             hHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHH
Q 037816          496 EHYACVVDMVGRAGLLIEARSFIERM--PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI  570 (648)
Q Consensus       496 ~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  570 (648)
                      .+++.|..+|.+.+++++|+..+++.  -...|..++.++.-.|...|+++.|++.|.+++.+.|++..+-..|..+
T Consensus       456 p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a  532 (611)
T KOG1173|consen  456 PTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA  532 (611)
T ss_pred             HHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence            34666777777777777777777766  2233566677777777777777777777777777777775555444433

>PRK12370 invasion protein regulator; Provisional

Probab=99.27  E-value=2.4e-09  Score=113.29  Aligned_cols=244  Identities=11%  Similarity=0.001  Sum_probs=178.1

Q ss_pred             CHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHh---------ccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC
Q 037816          338 FEEEAMQLFVKMVKAGIEID-PNMVSAVLGVFG---------VDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCG  407 (648)
Q Consensus       338 ~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  407 (648)
                      ..++|...|++..+..  |+ ...+..+..++.         ..+++++|...++++.+.+ +.+...+..+...+...|
T Consensus       276 ~~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g  352 (553)
T PRK12370        276 SLQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS  352 (553)
T ss_pred             HHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence            4568888888887753  43 344444433332         2345788999999888876 567788888888899999


Q ss_pred             CHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHH
Q 037816          408 DLEDSIKVFSRMAP---RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD-VTFLSLLHACSHVGLVNKGMEFLK  483 (648)
Q Consensus       408 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~  483 (648)
                      ++++|...|++..+   .+...+..+...+...|++++|+..+++..+..  |+. ..+..++..+...|++++|...++
T Consensus       353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~  430 (553)
T PRK12370        353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGD  430 (553)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence            99999999998753   356678888899999999999999999999854  543 333344555667899999999999


Q ss_pred             HhHHhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHH-HHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 037816          484 SMTEVHRISP-RAEHYACVVDMVGRAGLLIEARSFIERM-PVKPDVLV-WQALLGACSIHGDSEMGKYAAEKLFLAQPDS  560 (648)
Q Consensus       484 ~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~  560 (648)
                      ++.+.  .+| ++..+..+..+|...|++++|...++++ ...|+... .+.+...|...|  +.|...++++.+..-..
T Consensus       431 ~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~  506 (553)
T PRK12370        431 ELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI  506 (553)
T ss_pred             HHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence            98763  334 5666788889999999999999999988 55565444 455555667777  47888788776543322


Q ss_pred             CccHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037816          561 PAPYILMANIYSCSGRWKERAKAIKRMKEMG  591 (648)
Q Consensus       561 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  591 (648)
                      +.-......+|.-.|+-+.+..+ +++.+.+
T Consensus       507 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~  536 (553)
T PRK12370        507 DNNPGLLPLVLVAHGEAIAEKMW-NKFKNED  536 (553)
T ss_pred             hcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence            22233366677888898888877 8887765

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.23  E-value=4.8e-09  Score=105.65  Aligned_cols=232  Identities=13%  Similarity=0.162  Sum_probs=169.8

Q ss_pred             HHHHHHHHHHHhccCChhHHHHHHHHHHHh-----C-CCCch-hHHHHHHHHHHhCCCHHHHHHHHhhcCC-------C-
Q 037816          358 PNMVSAVLGVFGVDTSLGLGKQIHSLIIKS-----D-FTSNP-FVNNGLINMYSKCGDLEDSIKVFSRMAP-------R-  422 (648)
Q Consensus       358 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~-  422 (648)
                      ..+...+...|...|+++.|..+++...+.     | ..|.. .+.+.+...|...+++.+|..+|+++..       + 
T Consensus       199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~  278 (508)
T KOG1840|consen  199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED  278 (508)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence            355666777788888888888887766643     2 12222 2233466788888898888888887642       1 


Q ss_pred             ---ChhHHHHHHHHHHHcCChHHHHHHHHHHHH---c--CC-CCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcC--
Q 037816          423 ---NSVSWNSMIAAFARHGNGFKALELYEEMKL---E--GV-EPTD-VTFLSLLHACSHVGLVNKGMEFLKSMTEVHR--  490 (648)
Q Consensus       423 ---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~---~--~~-~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--  490 (648)
                         -..+++.|..+|.+.|++++|...+++..+   +  |. .|.. ..++.+...|+..+++++|..+++...+.+.  
T Consensus       279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~  358 (508)
T KOG1840|consen  279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA  358 (508)
T ss_pred             CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence               234677788889999999988888877653   1  21 1222 2356667778999999999999998776433  


Q ss_pred             CCC----ChhHHHHHHHHhhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHh-
Q 037816          491 ISP----RAEHYACVVDMVGRAGLLIEARSFIERM---------PVKPD-VLVWQALLGACSIHGDSEMGKYAAEKLFL-  555 (648)
Q Consensus       491 ~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-  555 (648)
                      +.+    -..+++.|...|...|++++|.++++++         +..+. ...++.+...|.+.+.+++|.++|.+... 
T Consensus       359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i  438 (508)
T KOG1840|consen  359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI  438 (508)
T ss_pred             ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            222    3467899999999999999999999887         11222 55678888899999999999998888764 


Q ss_pred             ---cCC---CCCccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037816          556 ---AQP---DSPAPYILMANIYSCSGRWKERAKAIKRMKE  589 (648)
Q Consensus       556 ---~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  589 (648)
                         ..|   +-..+|..|+.+|.++|++++|.++.++...
T Consensus       439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~  478 (508)
T KOG1840|consen  439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN  478 (508)
T ss_pred             HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence               233   4456889999999999999999999998763

>PF13041 PPR_2: PPR repeat family

Probab=99.22  E-value=2.6e-11  Score=81.70  Aligned_cols=50  Identities=34%  Similarity=0.502  Sum_probs=44.9

Q ss_pred             CCcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhc
Q 037816          220 RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG  269 (648)
Q Consensus       220 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~  269 (648)
                      ||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            68889999999999999999999999999999999999999999888864

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.20  E-value=8.5e-09  Score=96.92  Aligned_cols=197  Identities=14%  Similarity=0.105  Sum_probs=109.0

Q ss_pred             cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 037816          325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYS  404 (648)
Q Consensus       325 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  404 (648)
                      .+..+...+...|++++|...+++..+.. +.+...+..+...+...|+++.|...++...+.. +              
T Consensus        33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~--------------   96 (234)
T TIGR02521        33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-P--------------   96 (234)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-C--------------
Confidence            45555566666666666666666665442 2223344444444444444444444444444332 1              


Q ss_pred             hCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHH
Q 037816          405 KCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP-TDVTFLSLLHACSHVGLVNKGMEFLK  483 (648)
Q Consensus       405 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~  483 (648)
                                       .+...+..+...+...|++++|...+++..+....| ....+..+..++...|++++|...++
T Consensus        97 -----------------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  159 (234)
T TIGR02521        97 -----------------NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLT  159 (234)
T ss_pred             -----------------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence                             233344445555555666666666666655432112 23344555566666677777777777


Q ss_pred             HhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 037816          484 SMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PV-KPDVLVWQALLGACSIHGDSEMGKYAAEKLFLA  556 (648)
Q Consensus       484 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  556 (648)
                      +..+.  .+.+...+..+...+...|++++|.+.+++. .. ..+...+..+...+...|+.+.|..+.+.+.+.
T Consensus       160 ~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  232 (234)
T TIGR02521       160 RALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL  232 (234)
T ss_pred             HHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            66652  2234556666666777777777777776665 22 223455555566666677777777766666544

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.19  E-value=8.7e-10  Score=99.98  Aligned_cols=224  Identities=10%  Similarity=0.009  Sum_probs=177.6

Q ss_pred             HHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHHcC
Q 037816          362 SAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP--R-NSVSWNSMIAAFARHG  438 (648)
Q Consensus       362 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~  438 (648)
                      ..+..+|.+.|.+.+|.+.++...+.  .|.+.+|-.|-..|.+..+++.|+.+|.+..+  | |+....-+...+-..+
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~  304 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME  304 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence            45666677777777777776665554  35566677777888888888888888887663  3 4444455667777888


Q ss_pred             ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHH
Q 037816          439 NGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFI  518 (648)
Q Consensus       439 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  518 (648)
                      +.++|.++++...+.. ..+......+...|...++++.|+++|+++.+. |+ -++..|+.+.-+|.-.++++-++..|
T Consensus       305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~sf  381 (478)
T KOG1129|consen  305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GA-QSPELFCNIGLCCLYAQQIDLVLPSF  381 (478)
T ss_pred             hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence            8999999999888764 446667777777888889999999999999885 54 47778888888888889999998888


Q ss_pred             HhC---CCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816          519 ERM---PVKPD--VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       519 ~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  590 (648)
                      ++.   ...|+  ...|-.+.......||+..|.+.|+-++..+|++..+++.++-.-.+.|++++|..+++...+.
T Consensus       382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~  458 (478)
T KOG1129|consen  382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV  458 (478)
T ss_pred             HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence            877   22343  5668888888889999999999999999999999999999999999999999999999988764

>PF13041 PPR_2: PPR repeat family

Probab=99.19  E-value=7.4e-11  Score=79.49  Aligned_cols=50  Identities=28%  Similarity=0.572  Sum_probs=44.3

Q ss_pred             CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 037816          422 RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSH  471 (648)
Q Consensus       422 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~  471 (648)
                      ||+.+||+++.+|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            67888999999999999999999999999999999999999999988874

>PRK12370 invasion protein regulator; Provisional

Probab=99.16  E-value=5.5e-09  Score=110.60  Aligned_cols=211  Identities=10%  Similarity=0.041  Sum_probs=165.1

Q ss_pred             ChhHHHHHHHHHHHhCCCCchhHHHHHHHHHH---------hCCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCCh
Q 037816          373 SLGLGKQIHSLIIKSDFTSNPFVNNGLINMYS---------KCGDLEDSIKVFSRMAP---RNSVSWNSMIAAFARHGNG  440 (648)
Q Consensus       373 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~  440 (648)
                      +.++|...+++..+.. |.+...+..+..+|.         ..+++++|...+++..+   .+...+..+...+...|++
T Consensus       276 ~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~  354 (553)
T PRK12370        276 SLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY  354 (553)
T ss_pred             HHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence            4678889999888765 444556666655544         23458899999988763   3677888888889999999


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHhhhcCCHHHHHHHHH
Q 037816          441 FKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR-AEHYACVVDMVGRAGLLIEARSFIE  519 (648)
Q Consensus       441 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~  519 (648)
                      ++|...+++..+.+ +.+...+..+..++...|++++|...++++.+.   .|+ ...+..++..+...|++++|.+.++
T Consensus       355 ~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~~~~~~~~~~~~g~~eeA~~~~~  430 (553)
T PRK12370        355 IVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAAGITKLWITYYHTGIDDAIRLGD  430 (553)
T ss_pred             HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence            99999999999865 335667888888999999999999999999874   453 3334445556777899999999998


Q ss_pred             hC--CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816          520 RM--PVKPD-VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       520 ~~--~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  590 (648)
                      +.  ...|+ +..+..+..++...|+.++|...++++....|.+......++..|...|  ++|...++++.+.
T Consensus       431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~  502 (553)
T PRK12370        431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES  502 (553)
T ss_pred             HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence            87  22354 5557777888899999999999999998888888888888888888888  4888888887664

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.15  E-value=1.3e-06  Score=89.62  Aligned_cols=253  Identities=13%  Similarity=0.123  Sum_probs=137.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhC
Q 037816          327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKC  406 (648)
Q Consensus       327 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~  406 (648)
                      ..+...|...|++++|++++++.+++. +.....|..-...+-+.|++.+|.+.++.....+ ..|..+-+..+..+.+.
T Consensus       198 ~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa  275 (517)
T PF12569_consen  198 YFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRA  275 (517)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHC
Confidence            334555666677777777777666653 2235556666666667777777777777766655 45556666666677777


Q ss_pred             CCHHHHHHHHhhcCCCChh----------HH--HHHHHHHHHcCChHHHHHHHHHHHHc--CC---C----------CCH
Q 037816          407 GDLEDSIKVFSRMAPRNSV----------SW--NSMIAAFARHGNGFKALELYEEMKLE--GV---E----------PTD  459 (648)
Q Consensus       407 g~~~~A~~~~~~~~~~~~~----------~~--~~l~~~~~~~~~~~~A~~~~~~m~~~--~~---~----------p~~  459 (648)
                      |+.++|.+++....+++..          .|  .....+|.+.|++..|++.|....+.  .+   +          .+.
T Consensus       276 ~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~  355 (517)
T PF12569_consen  276 GRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTL  355 (517)
T ss_pred             CCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccH
Confidence            7777777777666543311          11  22355677777777777666655432  01   1          222


Q ss_pred             HHHHHHHHHHhccC-------cHHHHHHHHHHhHHhcCCCCC-----------hhHHHHHHHHh---hhcCCHHHHHHHH
Q 037816          460 VTFLSLLHACSHVG-------LVNKGMEFLKSMTEVHRISPR-----------AEHYACVVDMV---GRAGLLIEARSFI  518 (648)
Q Consensus       460 ~~~~~ll~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~-----------~~~~~~l~~~~---~~~g~~~~A~~~~  518 (648)
                      .+|..+++..-+..       -...|.++|-.+.........           ..--..+..-.   .+...-+++...-
T Consensus       356 r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~  435 (517)
T PF12569_consen  356 RAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAA  435 (517)
T ss_pred             HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            23333333221111       112344555444332100000           00001111100   1111111121111


Q ss_pred             H-----------hC------CCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHH
Q 037816          519 E-----------RM------PVKPDVLVWQALLGACSIH-GDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKER  580 (648)
Q Consensus       519 ~-----------~~------~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A  580 (648)
                      .           ..      +..||+.     ..-+.+. .=.++|.++++-+.+..|++..+|.....+|.+.|++--|
T Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~D~Dp~-----GekL~~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLa  510 (517)
T PF12569_consen  436 KKEPKKQQNKSKKKEKVEPKKKDDDPL-----GEKLLKTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLA  510 (517)
T ss_pred             hhhhhhhhccccccccccCCcCCCCcc-----HHHHhcCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHH
Confidence            0           00      1223332     2223333 4578899999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 037816          581 AKAIKR  586 (648)
Q Consensus       581 ~~~~~~  586 (648)
                      ++.+.+
T Consensus       511 LqaL~k  516 (517)
T PF12569_consen  511 LQALKK  516 (517)
T ss_pred             HHHHHh
Confidence            887764

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.14  E-value=6.4e-08  Score=97.66  Aligned_cols=200  Identities=12%  Similarity=0.149  Sum_probs=128.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHc-----CC-Cc-CHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHH
Q 037816          328 VILVGFAQNGFEEEAMQLFVKMVKA-----GI-EI-DPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLI  400 (648)
Q Consensus       328 ~li~~~~~~~~~~~a~~~~~~m~~~-----~~-~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li  400 (648)
                      .+...|...+++++|..+|+++...     |- .| -..++..|..+|.+.|++++|...++.+.+              
T Consensus       246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~--------------  311 (508)
T KOG1840|consen  246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALE--------------  311 (508)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHH--------------
Confidence            3556778888888888888887642     10 11 112333333344444444444444433221              


Q ss_pred             HHHHhCCCHHHHHHHHhhcC---CCCh-hHHHHHHHHHHHcCChHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHH
Q 037816          401 NMYSKCGDLEDSIKVFSRMA---PRNS-VSWNSMIAAFARHGNGFKALELYEEMKLE---GVEPT----DVTFLSLLHAC  469 (648)
Q Consensus       401 ~~~~~~g~~~~A~~~~~~~~---~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~---~~~p~----~~~~~~ll~~~  469 (648)
                                    +++...   .+.+ ..++.+...++..+++++|..+++...+.   -+.++    ..+++.|...|
T Consensus       312 --------------I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~  377 (508)
T KOG1840|consen  312 --------------IYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELY  377 (508)
T ss_pred             --------------HHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence                          111100   1111 23445566677777888888777765532   12232    35788888999


Q ss_pred             hccCcHHHHHHHHHHhHHhc----C-CCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhC--------CCCCC-HHHHHHHH
Q 037816          470 SHVGLVNKGMEFLKSMTEVH----R-ISP-RAEHYACVVDMVGRAGLLIEARSFIERM--------PVKPD-VLVWQALL  534 (648)
Q Consensus       470 ~~~g~~~~A~~~~~~~~~~~----~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~l~  534 (648)
                      ...|++++|.++++++.+..    + ..+ ....++.|...|.+.++..+|.++|.+.        +..|+ ..+|..|.
T Consensus       378 ~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~  457 (508)
T KOG1840|consen  378 LKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLA  457 (508)
T ss_pred             HHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHH
Confidence            99999999999999887642    1 122 3456778888899999988888888775        23455 56799999


Q ss_pred             HHHHHcCChHHHHHHHHHHHh
Q 037816          535 GACSIHGDSEMGKYAAEKLFL  555 (648)
Q Consensus       535 ~~~~~~g~~~~A~~~~~~~~~  555 (648)
                      ..|...|+++.|+++.+.+..
T Consensus       458 ~~Y~~~g~~e~a~~~~~~~~~  478 (508)
T KOG1840|consen  458 ALYRAQGNYEAAEELEEKVLN  478 (508)
T ss_pred             HHHHHcccHHHHHHHHHHHHH
Confidence            999999999999999998873

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.13  E-value=1.4e-06  Score=87.01  Aligned_cols=453  Identities=10%  Similarity=0.026  Sum_probs=283.3

Q ss_pred             chHHHHHHHHhccCCCcchhHHHHHHhhhcCCCCCcCcCCCCChHHHHHHHHHHHhcCCChhHHHHhhccCCCC---Ccc
Q 037816           45 VDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMR---DTV  121 (648)
Q Consensus        45 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~  121 (648)
                      ..|-.++.+| ..+.+..+....+.+.+.   +        +--..+.....-.+...|+-++|......-.+.   +.+
T Consensus         9 ~lF~~~lk~y-E~kQYkkgLK~~~~iL~k---~--------~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~v   76 (700)
T KOG1156|consen    9 ALFRRALKCY-ETKQYKKGLKLIKQILKK---F--------PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHV   76 (700)
T ss_pred             HHHHHHHHHH-HHHHHHhHHHHHHHHHHh---C--------CccchhHHhccchhhcccchHHHHHHHHHHhccCcccch
Confidence            3455566555 466888888888888887   2        333445555555667789999999988876643   566


Q ss_pred             cHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHh
Q 037816          122 SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSY  201 (648)
Q Consensus       122 ~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~  201 (648)
                      +|..+.-.+-...++++|+..|......+  ||+...+..+.-.-++.|+++..........+.. +.....|..+..++
T Consensus        77 CwHv~gl~~R~dK~Y~eaiKcy~nAl~~~--~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~  153 (700)
T KOG1156|consen   77 CWHVLGLLQRSDKKYDEAIKCYRNALKIE--KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQ  153 (700)
T ss_pred             hHHHHHHHHhhhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHH
Confidence            78888877778889999999999988865  8887678777777778888888777777776643 44456788888888


Q ss_pred             HhcCChhHHHHHhcccCC-----CCcccHHHH------HHHHHHCCCchHHHHHHHHHHhCCCCCChhh-HHHHHHHhhc
Q 037816          202 FKCGSSSSGRKVFGEMRV-----RNVITWTAV------ISGLVQNQLYEEGLKLFVKMHLGLINPNSLT-YLSSVMACSG  269 (648)
Q Consensus       202 ~~~g~~~~A~~~~~~~~~-----~~~~~~~~l------i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t-~~~ll~~~~~  269 (648)
                      .-.|+...|..++++..+     ++...|.-.      .....++|.+++|++.+..-... + .|... -.+-...+.+
T Consensus       154 ~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i-~Dkla~~e~ka~l~~k  231 (700)
T KOG1156|consen  154 HLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-I-VDKLAFEETKADLLMK  231 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-H-HHHHHHhhhHHHHHHH
Confidence            888999999988877652     333333322      24556778888888877665321 1 22222 2233445667


Q ss_pred             cCChHHHHHHHHHHHHhcCCCchhHH-HHHHHHHHhcC-CHHHHHHHHHhccCC---CcccHHHHHHHHHHcCCHHHHHH
Q 037816          270 LQALCEGRQIHGILWKLALQSDLCIE-SALMDMYSKCG-SVEDAWQIFEFAEEL---DGVSMTVILVGFAQNGFEEEAMQ  344 (648)
Q Consensus       270 ~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~-~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~  344 (648)
                      .+++++|..++..++..+  ||..-| -.+..++.+.. ..+....+|....+.   ....-..=++......-.+..-.
T Consensus       232 l~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdk  309 (700)
T KOG1156|consen  232 LGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDK  309 (700)
T ss_pred             HhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHH
Confidence            889999999999888774  444444 44444444333 333333556555431   00000000111111222344455


Q ss_pred             HHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHH----HhC----------CCCchhHHH--HHHHHHHhCCC
Q 037816          345 LFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII----KSD----------FTSNPFVNN--GLINMYSKCGD  408 (648)
Q Consensus       345 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~----------~~~~~~~~~--~li~~~~~~g~  408 (648)
                      ++..+.+.|+++-...+..+   +-.....+-.+++...+.    ..|          -+|++..|+  .++..+-+.|+
T Consensus       310 yL~~~l~Kg~p~vf~dl~SL---yk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~  386 (700)
T KOG1156|consen  310 YLRPLLSKGVPSVFKDLRSL---YKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGD  386 (700)
T ss_pred             HHHHHhhcCCCchhhhhHHH---HhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHccc
Confidence            66777777776543333332   222111111111111111    111          145554444  56777888999


Q ss_pred             HHHHHHHHhhcCCCChhH---HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 037816          409 LEDSIKVFSRMAPRNSVS---WNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSM  485 (648)
Q Consensus       409 ~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~  485 (648)
                      ++.|...++.....++..   |-.=.+.+...|++++|..++++..+.+ .||...-..-.....+.+..++|.++....
T Consensus       387 ~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skF  465 (700)
T KOG1156|consen  387 YEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKF  465 (700)
T ss_pred             HHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHh
Confidence            999999999887654443   3334577888999999999999988865 456555445666677888999999998888


Q ss_pred             HHhcCCCC-----ChhH-HHH--HHHHhhhcCCHHHHHHHHHhC
Q 037816          486 TEVHRISP-----RAEH-YAC--VVDMVGRAGLLIEARSFIERM  521 (648)
Q Consensus       486 ~~~~~~~~-----~~~~-~~~--l~~~~~~~g~~~~A~~~~~~~  521 (648)
                      .+. |...     +... |-.  =..+|.+.|++..|++=|..+
T Consensus       466 Tr~-~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i  508 (700)
T KOG1156|consen  466 TRE-GFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI  508 (700)
T ss_pred             hhc-ccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence            774 5411     1111 111  134678888888887766655

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.13  E-value=1.1e-06  Score=87.81  Aligned_cols=101  Identities=10%  Similarity=0.049  Sum_probs=81.6

Q ss_pred             CCChhHH--HHHHHHhhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHH
Q 037816          492 SPRAEHY--ACVVDMVGRAGLLIEARSFIERM-PVKPDV-LVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILM  567 (648)
Q Consensus       492 ~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l  567 (648)
                      +|+...|  -.++..|-+.|+++.|...++.. +-.|+. ..|..-.+.+...|+.+.|-..++++.+++-.|..+-..-
T Consensus       366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKc  445 (700)
T KOG1156|consen  366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKC  445 (700)
T ss_pred             CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHH
Confidence            4444444  45778889999999999999988 666763 3455556778888999999999999999998886666678


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhCCC
Q 037816          568 ANIYSCSGRWKERAKAIKRMKEMGV  592 (648)
Q Consensus       568 ~~~~~~~g~~~~A~~~~~~m~~~~~  592 (648)
                      +.-..++++.++|.++..+.-+.|.
T Consensus       446 AKYmLrAn~i~eA~~~~skFTr~~~  470 (700)
T KOG1156|consen  446 AKYMLRANEIEEAEEVLSKFTREGF  470 (700)
T ss_pred             HHHHHHccccHHHHHHHHHhhhccc
Confidence            8888899999999999999988775

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.12  E-value=2.3e-09  Score=97.26  Aligned_cols=233  Identities=11%  Similarity=0.049  Sum_probs=194.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhC
Q 037816          327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKC  406 (648)
Q Consensus       327 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~  406 (648)
                      +.+..+|.+.|.+.+|.+.|+.-...  .|-+.||..+-..|.+..++..|..++.+-.+. +|-++....-..+.+-..
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam  303 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM  303 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence            56888999999999999999888775  577788999999999999999999998887764 355555555677788888


Q ss_pred             CCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 037816          407 GDLEDSIKVFSRMAP---RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLK  483 (648)
Q Consensus       407 g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~  483 (648)
                      ++.++|.++|+...+   .++....++...|.-.++++-|+.+++++.+.|+ -++..|..+.-+|...+++|-++.-|+
T Consensus       304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~  382 (478)
T KOG1129|consen  304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQ  382 (478)
T ss_pred             HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHH
Confidence            999999999998764   3666777777888899999999999999999994 577788888889999999999999999


Q ss_pred             HhHHhcCCCC--ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 037816          484 SMTEVHRISP--RAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD  559 (648)
Q Consensus       484 ~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  559 (648)
                      +.... .-.|  -..+|-.+....+..|++.-|.+.|+-. ...| ....++.|.-.-.+.|+++.|..+++.+....|.
T Consensus       383 RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~  461 (478)
T KOG1129|consen  383 RALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD  461 (478)
T ss_pred             HHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence            99875 4445  4567888999999999999999999987 3333 4778999988889999999999999999999887


Q ss_pred             CCccH
Q 037816          560 SPAPY  564 (648)
Q Consensus       560 ~~~~~  564 (648)
                      -....
T Consensus       462 m~E~~  466 (478)
T KOG1129|consen  462 MAEVT  466 (478)
T ss_pred             ccccc
Confidence            54433

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.11  E-value=1.5e-06  Score=85.79  Aligned_cols=442  Identities=11%  Similarity=0.062  Sum_probs=261.4

Q ss_pred             HHHHHHHHhccCCCcchhHHHHHHhhhcCCCCCcCcCCCCChHHHHHHHHHHHhcCCChhHHHHhhccCCCCCcccHHH-
Q 037816           47 ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNT-  125 (648)
Q Consensus        47 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~y~~-  125 (648)
                      +.+=++-....|++++|......++..  +         |.+...+.+=+-++.+.+++++|+.+.+.-....  +++. 
T Consensus        15 l~t~ln~~~~~~e~e~a~k~~~Kil~~--~---------pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~--~~~~~   81 (652)
T KOG2376|consen   15 LLTDLNRHGKNGEYEEAVKTANKILSI--V---------PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL--VINSF   81 (652)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHhc--C---------CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh--hcchh
Confidence            334455566677888888888888877  2         6677888888889999999999997776654221  2222 


Q ss_pred             -HHHHH--HhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChh--HHHHHHHH
Q 037816          126 -MVSGF--LRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVT--VGNALITS  200 (648)
Q Consensus       126 -li~~~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~  200 (648)
                       +=.+|  .+.++.++|+..++     |..+++..+...-...|.+.++++++..+|+.+.+++. ++..  .-..++.+
T Consensus        82 ~fEKAYc~Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~-dd~d~~~r~nl~a~  155 (652)
T KOG2376|consen   82 FFEKAYCEYRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS-DDQDEERRANLLAV  155 (652)
T ss_pred             hHHHHHHHHHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-chHHHHHHHHHHHH
Confidence             23444  46899999999988     44444443666667779999999999999999988763 3322  22222221


Q ss_pred             hHhcCChhHHHHHhcccCCCCcccHHHHH---HHHHHCCCchHHHHHHHHHHhCC--------C-----CCChh-hHHHH
Q 037816          201 YFKCGSSSSGRKVFGEMRVRNVITWTAVI---SGLVQNQLYEEGLKLFVKMHLGL--------I-----NPNSL-TYLSS  263 (648)
Q Consensus       201 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~a~~~~~~m~~~~--------~-----~p~~~-t~~~l  263 (648)
                      -    -...+. +.+..+.....+|..+.   ..+...|++.+|+++++.....+        .     .-+.. .-..+
T Consensus       156 ~----a~l~~~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQl  230 (652)
T KOG2376|consen  156 A----AALQVQ-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQL  230 (652)
T ss_pred             H----HhhhHH-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHH
Confidence            1    111121 34444433344555444   45567899999999998883211        1     11111 12234


Q ss_pred             HHHhhccCChHHHHHHHHHHHHhcCCCch----hHHHHHHHHHHhcCCHH-HHHHHHHhccCC---------------Cc
Q 037816          264 VMACSGLQALCEGRQIHGILWKLALQSDL----CIESALMDMYSKCGSVE-DAWQIFEFAEEL---------------DG  323 (648)
Q Consensus       264 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~-~A~~~~~~~~~~---------------~~  323 (648)
                      .-++-..|+-++|..++...++... +|.    ..-|.|+.+-....-++ .++..++.....               .+
T Consensus       231 ayVlQ~~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i  309 (652)
T KOG2376|consen  231 AYVLQLQGQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAI  309 (652)
T ss_pred             HHHHHHhcchHHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            4455678999999999999888763 332    22233333222221111 122222222211               11


Q ss_pred             ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHh--ccCChhHHHHHHHHHHHhCCCCchhHHHHHHH
Q 037816          324 VSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFG--VDTSLGLGKQIHSLIIKSDFTSNPFVNNGLIN  401 (648)
Q Consensus       324 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~  401 (648)
                      ..-+.++..|.  +..+.+.++.....  +..|. ..+.+++..+.  +......+.+++....+..-.-...+.-.++.
T Consensus       310 ~~N~~lL~l~t--nk~~q~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQ  384 (652)
T KOG2376|consen  310 YRNNALLALFT--NKMDQVRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQ  384 (652)
T ss_pred             HHHHHHHHHHh--hhHHHHHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHH
Confidence            11122232222  22233333322211  11222 33444444433  22246667777766665543334556667777


Q ss_pred             HHHhCCCHHHHHHHHh--------hcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCCCHHHHHHHH---
Q 037816          402 MYSKCGDLEDSIKVFS--------RMAP--RNSVSWNSMIAAFARHGNGFKALELYEEMKLE--GVEPTDVTFLSLL---  466 (648)
Q Consensus       402 ~~~~~g~~~~A~~~~~--------~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~--~~~p~~~~~~~ll---  466 (648)
                      .....|+++.|.+++.        .+.+  ..+.+..+++..+.+.++.+.|..++++....  .-.+.......++   
T Consensus       385 l~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~a  464 (652)
T KOG2376|consen  385 LKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREA  464 (652)
T ss_pred             HHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHH
Confidence            8888899999988888        3332  24556666777777777777777777766531  1123323333333   


Q ss_pred             -HHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC
Q 037816          467 -HACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM  521 (648)
Q Consensus       467 -~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  521 (648)
                       .--.+.|+-++|..+++++.+  -.+++..+...++.+|++. +.+.|..+-+.+
T Consensus       465 a~f~lr~G~~~ea~s~leel~k--~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L  517 (652)
T KOG2376|consen  465 AEFKLRHGNEEEASSLLEELVK--FNPNDTDLLVQLVTAYARL-DPEKAESLSKKL  517 (652)
T ss_pred             hHHHHhcCchHHHHHHHHHHHH--hCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence             333567899999999999987  3567888888999888876 578888887777

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.08  E-value=1.7e-08  Score=87.77  Aligned_cols=162  Identities=14%  Similarity=0.117  Sum_probs=112.9

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHh
Q 037816          427 WNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP-RAEHYACVVDMV  505 (648)
Q Consensus       427 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~  505 (648)
                      ...|.-+|...|+...|..-+++.++.. +.+..++..+...|.+.|..+.|.+.|++..+   +.| +..+.|....-+
T Consensus        38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~FL  113 (250)
T COG3063          38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAFL  113 (250)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHHH
Confidence            3445566777777777777777777754 22445666677777777777777777777765   234 666677777777


Q ss_pred             hhcCCHHHHHHHHHhCCCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHH
Q 037816          506 GRAGLLIEARSFIERMPVKP----DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERA  581 (648)
Q Consensus       506 ~~~g~~~~A~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~  581 (648)
                      |..|++++|...|++.-..|    -..+|..+..+..+.|+.+.|...+++.++.+|+.+.....++....+.|++-.|.
T Consensus       114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar  193 (250)
T COG3063         114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR  193 (250)
T ss_pred             HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence            77777777777777762222    25567777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHhCCC
Q 037816          582 KAIKRMKEMGV  592 (648)
Q Consensus       582 ~~~~~m~~~~~  592 (648)
                      .++++....+.
T Consensus       194 ~~~~~~~~~~~  204 (250)
T COG3063         194 LYLERYQQRGG  204 (250)
T ss_pred             HHHHHHHhccc
Confidence            77777766554

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=99.08  E-value=1e-06  Score=88.72  Aligned_cols=74  Identities=16%  Similarity=0.151  Sum_probs=33.3

Q ss_pred             HhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHH
Q 037816          368 FGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY  447 (648)
Q Consensus       368 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  447 (648)
                      ......+.+|..+++.++....  ...-|..+.+.|...|+++.|+++|.+..     .++-.|..|.+.|+|+.|.++-
T Consensus       742 ai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla  814 (1636)
T KOG3616|consen  742 AIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLA  814 (1636)
T ss_pred             HhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHH
Confidence            3344445555555544443321  11233444445555555555555554332     2333444455555555554443


Q ss_pred             H
Q 037816          448 E  448 (648)
Q Consensus       448 ~  448 (648)
                      .
T Consensus       815 ~  815 (1636)
T KOG3616|consen  815 E  815 (1636)
T ss_pred             H
Confidence            3

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=9.8e-07  Score=83.21  Aligned_cols=387  Identities=10%  Similarity=0.044  Sum_probs=245.8

Q ss_pred             ChhHHHHHHHHhHhcCChhHHHHHhcccCCC-CcccHHHHHHHHHHCCC-chHHHHHHHHH-HhCCCCCChhhHHHHHHH
Q 037816          190 EVTVGNALITSYFKCGSSSSGRKVFGEMRVR-NVITWTAVISGLVQNQL-YEEGLKLFVKM-HLGLINPNSLTYLSSVMA  266 (648)
Q Consensus       190 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~-~~~a~~~~~~m-~~~~~~p~~~t~~~ll~~  266 (648)
                      +...-...+.+|...++.+.|...+.+.+.. .....|.|+.-+.+.|- ..++.--+.+. ++.   |=   -...|.+
T Consensus        96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrec---p~---aL~~i~~  169 (564)
T KOG1174|consen   96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIREC---PM---ALQVIEA  169 (564)
T ss_pred             cHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhc---ch---HHHHHHH
Confidence            4455566788888889999999888888754 33444545444444432 22222222222 221   00   0001111


Q ss_pred             hhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHh--cCCHHHHHHHHHhccC-----CCcccHHHHHHHHHHcCCH
Q 037816          267 CSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSK--CGSVEDAWQIFEFAEE-----LDGVSMTVILVGFAQNGFE  339 (648)
Q Consensus       267 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~  339 (648)
                      ..+.+ +..++..-..|-...++|.......-+.+++.  .++...|...+-.+..     .|+.....+..++...|+.
T Consensus       170 ll~l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn  248 (564)
T KOG1174|consen  170 LLELG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDY  248 (564)
T ss_pred             HHHHh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCc
Confidence            11100 11111111122222334444433333444333  3343344433332222     3666677888999999999


Q ss_pred             HHHHHHHHHHHHcCCCcCHHH-HHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhh
Q 037816          340 EEAMQLFVKMVKAGIEIDPNM-VSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSR  418 (648)
Q Consensus       340 ~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  418 (648)
                      ++|...|++....  .|+..+ .....-.+.+.|+.+....+...+.... ..+...|-.-.......++++.|+.+-++
T Consensus       249 ~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK  325 (564)
T KOG1174|consen  249 FQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEK  325 (564)
T ss_pred             hHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHH
Confidence            9999999998764  343321 1112223456778888777777666433 11222222223344567789999988887


Q ss_pred             cCCCC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC
Q 037816          419 MAPRN---SVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP-TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR  494 (648)
Q Consensus       419 ~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~  494 (648)
                      ..+.+   +..|-.-...+...|+.++|.-.|+....  +.| +...|..|+.+|...|++.+|.-.-....+  -++.+
T Consensus       326 ~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~s  401 (564)
T KOG1174|consen  326 CIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNS  401 (564)
T ss_pred             HhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--Hhhcc
Confidence            76544   44444344577889999999999999887  455 778999999999999999999988888776  34556


Q ss_pred             hhHHHHHH-HHhh-hcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHH
Q 037816          495 AEHYACVV-DMVG-RAGLLIEARSFIERM-PVKPD-VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI  570 (648)
Q Consensus       495 ~~~~~~l~-~~~~-~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  570 (648)
                      ..+...+. ..+. .-.--++|.+++++. .+.|+ ....+.+...|...|..+.++.++++.+...|++ .....+++.
T Consensus       402 A~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~  480 (564)
T KOG1174|consen  402 ARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDI  480 (564)
T ss_pred             hhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHH
Confidence            66666553 3333 223458899999887 88888 4456677777899999999999999999999886 799999999


Q ss_pred             HHhcCChHHHHHHHHHHHhCC
Q 037816          571 YSCSGRWKERAKAIKRMKEMG  591 (648)
Q Consensus       571 ~~~~g~~~~A~~~~~~m~~~~  591 (648)
                      +...+.+++|.+.|....+.+
T Consensus       481 ~~A~Ne~Q~am~~y~~ALr~d  501 (564)
T KOG1174|consen  481 MRAQNEPQKAMEYYYKALRQD  501 (564)
T ss_pred             HHHhhhHHHHHHHHHHHHhcC
Confidence            999999999999999987643

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.06  E-value=2.6e-08  Score=96.36  Aligned_cols=150  Identities=11%  Similarity=-0.014  Sum_probs=75.3

Q ss_pred             HHcCCHHHHHHHHHHHHHcC-CCcC--HHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHH
Q 037816          334 AQNGFEEEAMQLFVKMVKAG-IEID--PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLE  410 (648)
Q Consensus       334 ~~~~~~~~a~~~~~~m~~~~-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  410 (648)
                      ...+..+.++..+.++.... ..|+  ...|......+...|+.+.|...|+...+.. +.++..|+.+...+...|+++
T Consensus        37 ~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~  115 (296)
T PRK11189         37 QPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFD  115 (296)
T ss_pred             CCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHH
Confidence            34455566666666666432 1111  2334444455555666666666666555543 334555555555666666666


Q ss_pred             HHHHHHhhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 037816          411 DSIKVFSRMAP--R-NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMT  486 (648)
Q Consensus       411 ~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~  486 (648)
                      +|...|+...+  | +..+|..+..++...|++++|++.+++..+..  |+..........+...++.++|...+.+..
T Consensus       116 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~  192 (296)
T PRK11189        116 AAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRY  192 (296)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence            66665555432  2 33455555555555566666666665555532  332211111112233445555555554443

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.06  E-value=1.1e-05  Score=84.58  Aligned_cols=217  Identities=9%  Similarity=0.009  Sum_probs=125.3

Q ss_pred             HHHHHhcCCChhHHHHhhccCCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHH
Q 037816           95 LLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLV  174 (648)
Q Consensus        95 li~~~~~~g~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~  174 (648)
                      .+.+|+..|+++++.-...+..  -+.-|-.+++.+.+ -+++.+.++...|.+..  |... .+..+...+...+....
T Consensus       487 Vi~cfAE~Gqf~KiilY~kKvG--yTPdymflLq~l~r-~sPD~~~qFa~~l~Q~~--~~~~-die~I~DlFme~N~iQq  560 (1666)
T KOG0985|consen  487 VIQCFAETGQFKKIILYAKKVG--YTPDYMFLLQQLKR-SSPDQALQFAMMLVQDE--EPLA-DIEQIVDLFMELNLIQQ  560 (1666)
T ss_pred             HHHHHHHhcchhHHHHHHHHcC--CCccHHHHHHHHHc-cChhHHHHHHHHhhccC--CCcc-cHHHHHHHHHHHHhhhh
Confidence            3444555555555544444433  11225556666666 56777777777776643  2222 34444444444333333


Q ss_pred             HHHHHHHHHHhC-------------------C----------CCChhHHHHHHHHhHhcCChhHHHHHhcccCC--CCcc
Q 037816          175 SKMIHCLVYLCG-------------------Y----------EEEVTVGNALITSYFKCGSSSSGRKVFGEMRV--RNVI  223 (648)
Q Consensus       175 a~~~~~~~~~~~-------------------~----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~  223 (648)
                      +..++-..++..                   .          .-+..-+..+.+.|.+.|-...|++.+..+..  +.++
T Consensus       561 ~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~aPqVADAILgN~mFtHyDra~IAqLCEKAGL~qraLehytDl~DIKR~vV  640 (1666)
T KOG0985|consen  561 CTSFLLDALKLNSPDEGHLQTRLLEMNLVHAPQVADAILGNDMFTHYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVV  640 (1666)
T ss_pred             hHHHHHHHhcCCChhhhhHHHHHHHHHhccchHHHHHHHhccccccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHH
Confidence            333322222211                   0          01112255667777888888888887777652  2221


Q ss_pred             cHH----HHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHh-----------cC
Q 037816          224 TWT----AVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL-----------AL  288 (648)
Q Consensus       224 ~~~----~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----------~~  288 (648)
                      .-+    ..+-.|.-.-.++.+.+.++.|...+++.|..+...+..-|...=-.+...++|+.....           ++
T Consensus       641 hth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~  720 (1666)
T KOG0985|consen  641 HTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNF  720 (1666)
T ss_pred             HhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhcc
Confidence            111    112334445577888888888888888888877777777776665666677777765431           24


Q ss_pred             CCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 037816          289 QSDLCIESALMDMYSKCGSVEDAWQIFEF  317 (648)
Q Consensus       289 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  317 (648)
                      ..|..+.-..|.+.++.|++.+.+++.++
T Consensus       721 seDpevh~KYIqAA~kt~QikEvERicre  749 (1666)
T KOG0985|consen  721 SEDPEVHFKYIQAACKTGQIKEVERICRE  749 (1666)
T ss_pred             ccCchHHHHHHHHHHhhccHHHHHHHHhc
Confidence            55666667788888999999988887654

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.05  E-value=1.5e-07  Score=91.05  Aligned_cols=92  Identities=8%  Similarity=-0.078  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 037816          326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSK  405 (648)
Q Consensus       326 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~  405 (648)
                      |..+...+...|++++|...|++..+.. +.+...|..+...+...|+++.|...++...+.. +.+..++..+..++..
T Consensus        67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~  144 (296)
T PRK11189         67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYY  144 (296)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence            3344444444555555555555444432 2234444444444555555555555555444432 2233344444444444


Q ss_pred             CCCHHHHHHHHhhc
Q 037816          406 CGDLEDSIKVFSRM  419 (648)
Q Consensus       406 ~g~~~~A~~~~~~~  419 (648)
                      .|++++|.+.|+..
T Consensus       145 ~g~~~eA~~~~~~a  158 (296)
T PRK11189        145 GGRYELAQDDLLAF  158 (296)
T ss_pred             CCCHHHHHHHHHHH
Confidence            55555555554443

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.03  E-value=1.9e-05  Score=81.00  Aligned_cols=222  Identities=11%  Similarity=0.048  Sum_probs=146.5

Q ss_pred             HhccCCCcchhHHHHHHhhhcCCCCCcCcCCCCChHHHHHHHHHHHhcCCChhHHHHhhccCCC-----------CCc-c
Q 037816           54 SAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPM-----------RDT-V  121 (648)
Q Consensus        54 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~~~-~  121 (648)
                      |...|+++.|..-.+.+                .+..+|..+.++|.+..+.+-|.-.+..|..           .|. .
T Consensus       738 yvtiG~MD~AfksI~~I----------------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e  801 (1416)
T KOG3617|consen  738 YVTIGSMDAAFKSIQFI----------------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEE  801 (1416)
T ss_pred             EEEeccHHHHHHHHHHH----------------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcc
Confidence            55567777776655444                3456899999999999999999999988862           122 2


Q ss_pred             cHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHh
Q 037816          122 SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSY  201 (648)
Q Consensus       122 ~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~  201 (648)
                      +-.-+.-.-...|..++|..+|.+.++.          ..|=+.|-..|.+++|.++-+.--+-.+.   .||.....-+
T Consensus       802 ~eakvAvLAieLgMlEeA~~lYr~ckR~----------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~L  868 (1416)
T KOG3617|consen  802 DEAKVAVLAIELGMLEEALILYRQCKRY----------DLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYL  868 (1416)
T ss_pred             hhhHHHHHHHHHhhHHHHHHHHHHHHHH----------HHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHH
Confidence            2222223336678999999999988754          33445566678888888776554332222   3444455555


Q ss_pred             HhcCChhHHHHHhcccCC-----------------------CCcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChh
Q 037816          202 FKCGSSSSGRKVFGEMRV-----------------------RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSL  258 (648)
Q Consensus       202 ~~~g~~~~A~~~~~~~~~-----------------------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~  258 (648)
                      ...++.+.|++.|+....                       +|...|.-....+-..|+.+.|+.+|...++        
T Consensus       869 ear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--------  940 (1416)
T KOG3617|consen  869 EARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--------  940 (1416)
T ss_pred             HhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh--------
Confidence            667888888888876642                       2334444455555567888888888877654        


Q ss_pred             hHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 037816          259 TYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAE  319 (648)
Q Consensus       259 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  319 (648)
                       |-++++..+-.|+.++|.++-++-      -|....-.|.+.|-..|++.+|..+|.+..
T Consensus       941 -~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  941 -YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ  994 (1416)
T ss_pred             -hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence             555666666677777777766542      233344557777778888888888776654

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.97  E-value=1.3e-06  Score=89.40  Aligned_cols=285  Identities=10%  Similarity=0.026  Sum_probs=139.6

Q ss_pred             HHHhHhcCChhHHHHHhcccCC--CCc-ccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhh------
Q 037816          198 ITSYFKCGSSSSGRKVFGEMRV--RNV-ITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS------  268 (648)
Q Consensus       198 i~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~------  268 (648)
                      ...+...|++++|++.++.-..  .|. .........+.+.|+.++|..+|..+.+.+  |+...|-..+..+.      
T Consensus        11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~   88 (517)
T PF12569_consen   11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQL   88 (517)
T ss_pred             HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccc
Confidence            3445667777777777765542  232 334455666777777777777777776643  56655544444332      


Q ss_pred             ccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHHcCCHHHHHHHHHH
Q 037816          269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVK  348 (648)
Q Consensus       269 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  348 (648)
                      ...+.+...++++++...-  |.......+.-.+.....+                              -..+..++..
T Consensus        89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F------------------------------~~~~~~yl~~  136 (517)
T PF12569_consen   89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEF------------------------------KERLDEYLRP  136 (517)
T ss_pred             ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHH------------------------------HHHHHHHHHH
Confidence            1112344444444443322  1111111110001110011                              1233344445


Q ss_pred             HHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHh----C----------CCCch--hHHHHHHHHHHhCCCHHHH
Q 037816          349 MVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS----D----------FTSNP--FVNNGLINMYSKCGDLEDS  412 (648)
Q Consensus       349 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~----------~~~~~--~~~~~li~~~~~~g~~~~A  412 (648)
                      +...|+++   +|+.+-..|...........++......    +          -+|+.  .++..+...|-..|++++|
T Consensus       137 ~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~A  213 (517)
T PF12569_consen  137 QLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKA  213 (517)
T ss_pred             HHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHH
Confidence            55555432   3333333333333333333333333211    0          12333  2334445556666666666


Q ss_pred             HHHHhhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc
Q 037816          413 IKVFSRMAP--R-NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH  489 (648)
Q Consensus       413 ~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~  489 (648)
                      ++++++...  | .+..|..-...|-+.|++.+|.+.++.....+ .-|...-+-....+.+.|++++|.+++....+. 
T Consensus       214 l~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~-  291 (517)
T PF12569_consen  214 LEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTRE-  291 (517)
T ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC-
Confidence            666665543  2 23455555666666677777766666666643 234445555556666667777776666666553 


Q ss_pred             CCCCChhHH--------HHHHHHhhhcCCHHHHHHHHHhC
Q 037816          490 RISPRAEHY--------ACVVDMVGRAGLLIEARSFIERM  521 (648)
Q Consensus       490 ~~~~~~~~~--------~~l~~~~~~~g~~~~A~~~~~~~  521 (648)
                      +..|....+        .....+|.+.|++..|++-|..+
T Consensus       292 ~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v  331 (517)
T PF12569_consen  292 DVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV  331 (517)
T ss_pred             CCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            333321111        23345666666666666555443

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.97  E-value=2.6e-06  Score=86.93  Aligned_cols=431  Identities=13%  Similarity=0.060  Sum_probs=248.2

Q ss_pred             CChHHHHHHHHHHHhcCCChhHHHHhhccCCC---CCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHH
Q 037816           86 PNATVIWNSLLSFYLKCDQMRNAVKLFDDMPM---RDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII  162 (648)
Q Consensus        86 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~l  162 (648)
                      ..|..+|..|.-++.+.|+++.+.+.|+....   .....|+.+-..|...|....|..+++.-....-.|++...+...
T Consensus       320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma  399 (799)
T KOG4162|consen  320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA  399 (799)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence            45555666555556666666666666655442   123345555555555565555665555544333224333233333


Q ss_pred             HHHhh-ccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccC-CCCcccHHHHHHHHHHC-----
Q 037816          163 LSACD-RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR-VRNVITWTAVISGLVQN-----  235 (648)
Q Consensus       163 l~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~-----  235 (648)
                      -+.|. +.+..+++..+-..++...                            .... ......|..+.-+|...     
T Consensus       400 sklc~e~l~~~eegldYA~kai~~~----------------------------~~~~~~l~~~~~l~lGi~y~~~A~~a~  451 (799)
T KOG4162|consen  400 SKLCIERLKLVEEGLDYAQKAISLL----------------------------GGQRSHLKPRGYLFLGIAYGFQARQAN  451 (799)
T ss_pred             HHHHHhchhhhhhHHHHHHHHHHHh----------------------------hhhhhhhhhhHHHHHHHHHHhHhhcCC
Confidence            33333 2233333333333333210                            0000 01112232222222211     


Q ss_pred             ------CCchHHHHHHHHHHhCC-CCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCH
Q 037816          236 ------QLYEEGLKLFVKMHLGL-INPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSV  308 (648)
Q Consensus       236 ------g~~~~a~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  308 (648)
                            ....++++.+++..+.+ -.|+...|.++  -++..++++.|.+..++..+.+-..+...|..|.-.+.-.+++
T Consensus       452 ~~seR~~~h~kslqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~  529 (799)
T KOG4162|consen  452 LKSERDALHKKSLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRL  529 (799)
T ss_pred             ChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhh
Confidence                  12356777777776543 33444444333  4566788999999999998887788888888888888888999


Q ss_pred             HHHHHHHHhccCCCcccHHH---HHHHHHHcCCHHHHHHHHHHHHHcC--CCcCHHHHHHHHHHHhccCChhHHHHHHHH
Q 037816          309 EDAWQIFEFAEELDGVSMTV---ILVGFAQNGFEEEAMQLFVKMVKAG--IEIDPNMVSAVLGVFGVDTSLGLGKQIHSL  383 (648)
Q Consensus       309 ~~A~~~~~~~~~~~~~~~~~---li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~  383 (648)
                      .+|+++.+...+.-...|+.   -+..-..-++.++++.....+...-  ..+-..+.           +-.........
T Consensus       530 ~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~-----------~~g~~~~lk~~  598 (799)
T KOG4162|consen  530 KEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTL-----------DEGKLLRLKAG  598 (799)
T ss_pred             HHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhh-----------hhhhhhhhhcc
Confidence            99999888766532222221   2233334678888887777665420  00100000           00011111111


Q ss_pred             HH--HhCCCCchhHHHHHHHHHH---hCCCHHHHHHHHhhcCCCC------hhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037816          384 II--KSDFTSNPFVNNGLINMYS---KCGDLEDSIKVFSRMAPRN------SVSWNSMIAAFARHGNGFKALELYEEMKL  452 (648)
Q Consensus       384 ~~--~~~~~~~~~~~~~li~~~~---~~g~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~  452 (648)
                      +.  .......+.++..+.....   +.-..+..+..+.....++      ...|......+.+.+..++|...+.+...
T Consensus       599 l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~  678 (799)
T KOG4162|consen  599 LHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK  678 (799)
T ss_pred             cccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Confidence            10  0011112223332222221   1111111111122222222      23455667778888999999988888876


Q ss_pred             cCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHhhhcCCHHHHHH--HHHhC-CCCC-CH
Q 037816          453 EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP-RAEHYACVVDMVGRAGLLIEARS--FIERM-PVKP-DV  527 (648)
Q Consensus       453 ~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~--~~~~~-~~~p-~~  527 (648)
                      .. +-....|......+...|..++|.+.|.....   +.| ++....++..++.+.|+..-|..  ++..+ .+.| +.
T Consensus       679 ~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~---ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~  754 (799)
T KOG4162|consen  679 ID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA---LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNH  754 (799)
T ss_pred             cc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCH
Confidence            42 33666777777888899999999999999864   566 77889999999999998777776  88887 6666 47


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 037816          528 LVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSP  561 (648)
Q Consensus       528 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~  561 (648)
                      ..|-.+...+.+.|+.+.|.+.|..+.++.+.+|
T Consensus       755 eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P  788 (799)
T KOG4162|consen  755 EAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP  788 (799)
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence            8899999999999999999999999999887765

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.97  E-value=1.6e-07  Score=81.71  Aligned_cols=192  Identities=12%  Similarity=0.054  Sum_probs=131.0

Q ss_pred             HHHHHHHHhCCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 037816          397 NGLINMYSKCGDLEDSIKVFSRMAPR---NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVG  473 (648)
Q Consensus       397 ~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g  473 (648)
                      .-|.-.|...|++..|..-+++..+.   +..+|..+...|.+.|..+.|.+.|++..+.. +-+....|....-+|..|
T Consensus        39 lqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg  117 (250)
T COG3063          39 LQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQG  117 (250)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCC
Confidence            34555677777777777777776532   34566777777777777777777777777643 224456666666677777


Q ss_pred             cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHH
Q 037816          474 LVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPD-VLVWQALLGACSIHGDSEMGKYAAE  551 (648)
Q Consensus       474 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~  551 (648)
                      .+++|.+.|++........--..+|..+.-+..+.|+++.|...|++. ...|+ +.+...+.....+.|++-.|..+++
T Consensus       118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~  197 (250)
T COG3063         118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLE  197 (250)
T ss_pred             ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHH
Confidence            777777777777765444445667777777777777777777777776 33343 5556667777777777777777777


Q ss_pred             HHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037816          552 KLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKE  589 (648)
Q Consensus       552 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  589 (648)
                      ......+......-..+.+-.+.|+-+.+-++=..+.+
T Consensus       198 ~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r  235 (250)
T COG3063         198 RYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR  235 (250)
T ss_pred             HHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            77766666666777777777777777777666555544

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.96  E-value=6.1e-05  Score=79.19  Aligned_cols=220  Identities=14%  Similarity=0.014  Sum_probs=104.6

Q ss_pred             cccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 037816          323 GVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINM  402 (648)
Q Consensus       323 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  402 (648)
                      +..|+.+..+-.+.|...+|++-|-+.      -|+..|..++..+.+.|.+++-..++....+..-.|...  +.||-+
T Consensus      1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFA 1175 (1666)
T ss_pred             hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHH
Confidence            345666666666666666666655332      355566677777777777777766666666555444433  456666


Q ss_pred             HHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 037816          403 YSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFL  482 (648)
Q Consensus       403 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~  482 (648)
                      |++.+++.+.++++.   .||..-...+..-|...|.++.|.-+|..         ...|..|...+...|+++.|...-
T Consensus      1176 yAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~a 1243 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAA 1243 (1666)
T ss_pred             HHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHh
Confidence            777766666555442   23333333333333334444433333221         112333333333333333333322


Q ss_pred             HHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 037816          483 KSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMP--VKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS  560 (648)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~  560 (648)
                      +++       .+..+|..+..+|...+.+.-|.    -.|  +-....-..-++..|...|-+++-+.+++..+.+....
T Consensus      1244 RKA-------ns~ktWK~VcfaCvd~~EFrlAQ----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAH 1312 (1666)
T KOG0985|consen 1244 RKA-------NSTKTWKEVCFACVDKEEFRLAQ----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAH 1312 (1666)
T ss_pred             hhc-------cchhHHHHHHHHHhchhhhhHHH----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHH
Confidence            222       12333433333333333222111    001  11123334445555555566666666655555555555


Q ss_pred             CccHHHHHHHHHh
Q 037816          561 PAPYILMANIYSC  573 (648)
Q Consensus       561 ~~~~~~l~~~~~~  573 (648)
                      ...|..++-.|++
T Consensus      1313 MgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1313 MGMFTELAILYSK 1325 (1666)
T ss_pred             HHHHHHHHHHHHh
Confidence            5555555544443

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.95  E-value=2.2e-06  Score=84.01  Aligned_cols=436  Identities=12%  Similarity=0.066  Sum_probs=210.6

Q ss_pred             HHHhcCCChhHHHHhhccCC---CCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChH
Q 037816           97 SFYLKCDQMRNAVKLFDDMP---MRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSL  173 (648)
Q Consensus        97 ~~~~~~g~~~~A~~~~~~~~---~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~  173 (648)
                      .+....|+++.|+..|.+..   .+|-..|..=..+|+..|++++|++=-.+-++..  |+=...|...-.++...|+++
T Consensus        10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~--p~w~kgy~r~Gaa~~~lg~~~   87 (539)
T KOG0548|consen   10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN--PDWAKGYSRKGAALFGLGDYE   87 (539)
T ss_pred             HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC--CchhhHHHHhHHHHHhcccHH
Confidence            45667899999999998765   4477778888889999999999888777766654  776668888888888889999


Q ss_pred             HHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHH-HHHhcccCCCCcccHHHH-----HHHHHHCCCchHHHHHHHH
Q 037816          174 VSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSG-RKVFGEMRVRNVITWTAV-----ISGLVQNQLYEEGLKLFVK  247 (648)
Q Consensus       174 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~~~~~~~~~~~~l-----i~~~~~~g~~~~a~~~~~~  247 (648)
                      +|...|..-++.. +.+...++.+..++    ..+.+ .+.|.   .|  ..|..+     .+.+...-.+..-++.++.
T Consensus        88 eA~~ay~~GL~~d-~~n~~L~~gl~~a~----~~~~~~~~~~~---~p--~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~  157 (539)
T KOG0548|consen   88 EAILAYSEGLEKD-PSNKQLKTGLAQAY----LEDYAADQLFT---KP--YFHEKLANLPLTNYSLSDPAYVKILEIIQK  157 (539)
T ss_pred             HHHHHHHHHhhcC-CchHHHHHhHHHhh----hHHHHhhhhcc---Cc--HHHHHhhcChhhhhhhccHHHHHHHHHhhc
Confidence            9999888877755 55566777777776    11111 11111   11  111111     1111111111111111111


Q ss_pred             HHhCCCCCChh-hH---HHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHH---HHHHHHHhcCC-HHHHHHHHHhcc
Q 037816          248 MHLGLINPNSL-TY---LSSVMACSGLQALCEGRQIHGILWKLALQSDLCIES---ALMDMYSKCGS-VEDAWQIFEFAE  319 (648)
Q Consensus       248 m~~~~~~p~~~-t~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~-~~~A~~~~~~~~  319 (648)
                            .|+.. .|   ..++.+.......+.-     .....|..+....-+   --....-..++ .++..      .
T Consensus       158 ------~p~~l~~~l~d~r~m~a~~~l~~~~~~-----~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~------~  220 (539)
T KOG0548|consen  158 ------NPTSLKLYLNDPRLMKADGQLKGVDEL-----LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERR------V  220 (539)
T ss_pred             ------CcHhhhcccccHHHHHHHHHHhcCccc-----cccccccccCCCCCCcccccCCCCCccchhHHHHH------H
Confidence                  01100 00   0000000000000000     000000000000000   00000000000 00000      0


Q ss_pred             CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHH--
Q 037816          320 ELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNN--  397 (648)
Q Consensus       320 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--  397 (648)
                      ..-......+.++..+..++..|++.+....+..  .+..-++..-.++...|.+..+...-....+.|.. ...-|+  
T Consensus       221 k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klI  297 (539)
T KOG0548|consen  221 KEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLI  297 (539)
T ss_pred             HHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHH
Confidence            0001112334555555666666666666665543  33333344444555555555555554444443311 111111  


Q ss_pred             -----HHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhc
Q 037816          398 -----GLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDV-TFLSLLHACSH  471 (648)
Q Consensus       398 -----~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~  471 (648)
                           .+..+|.+.++++.|...|.+...+-..     -....+....++++.......-  +.|... -...-...+.+
T Consensus       298 ak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk  370 (539)
T KOG0548|consen  298 AKALARLGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFK  370 (539)
T ss_pred             HHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHh
Confidence                 1333555556666676666654321000     1111223334444444444333  223321 12222445666


Q ss_pred             cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHH
Q 037816          472 VGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPD-VLVWQALLGACSIHGDSEMGKYA  549 (648)
Q Consensus       472 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~  549 (648)
                      .|++..|+..|.++++.  .+-|...|....-+|.+.|.+..|++-.+.. ...|+ ...|..=..++.-..+++.|.+.
T Consensus       371 ~gdy~~Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAlea  448 (539)
T KOG0548|consen  371 KGDYPEAVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEA  448 (539)
T ss_pred             ccCHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777777663  2446667777777777777777777665555 33343 22233333444445567777777


Q ss_pred             HHHHHhcCCCCCccHHHHHHHHHh
Q 037816          550 AEKLFLAQPDSPAPYILMANIYSC  573 (648)
Q Consensus       550 ~~~~~~~~p~~~~~~~~l~~~~~~  573 (648)
                      |++.++.+|.+..+...+.++...
T Consensus       449 y~eale~dp~~~e~~~~~~rc~~a  472 (539)
T KOG0548|consen  449 YQEALELDPSNAEAIDGYRRCVEA  472 (539)
T ss_pred             HHHHHhcCchhHHHHHHHHHHHHH
Confidence            777777777766555555555443

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.93  E-value=3.7e-06  Score=77.51  Aligned_cols=189  Identities=10%  Similarity=0.051  Sum_probs=98.5

Q ss_pred             HHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHH
Q 037816          367 VFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKA  443 (648)
Q Consensus       367 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A  443 (648)
                      .+...|+...|+.....+.+.. +-+...+..-..+|...|++..|+.=+....   ..+..++--+-..+...|+.+.+
T Consensus       164 s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~s  242 (504)
T KOG0624|consen  164 SASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENS  242 (504)
T ss_pred             HHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHH
Confidence            3445566666666666655543 4555666666667777777777665554433   34555555555666666777777


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHH-------------HHHHhccCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHh
Q 037816          444 LELYEEMKLEGVEPTDVTFLSL-------------LHACSHVGLVNKGMEFLKSMTEVHRISPR-----AEHYACVVDMV  505 (648)
Q Consensus       444 ~~~~~~m~~~~~~p~~~~~~~l-------------l~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~~l~~~~  505 (648)
                      +...++.++  +.||.......             +......+++.++++..+...+.   .|.     ...+..+..++
T Consensus       243 L~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~  317 (504)
T KOG0624|consen  243 LKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCY  317 (504)
T ss_pred             HHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecc
Confidence            766666666  33654322111             01122334444455544444432   221     22233344444


Q ss_pred             hhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 037816          506 GRAGLLIEARSFIERM-PVKPD-VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSP  561 (648)
Q Consensus       506 ~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~  561 (648)
                      ...|++.+|++...+. .+.|| ..++.--..+|.-...++.|++-|+++.+.++++.
T Consensus       318 ~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~  375 (504)
T KOG0624|consen  318 REDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT  375 (504)
T ss_pred             cccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence            5555555555555554 44443 44444444555555555555555555555555553

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.92  E-value=1.1e-07  Score=93.54  Aligned_cols=220  Identities=14%  Similarity=0.096  Sum_probs=166.2

Q ss_pred             hccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHH
Q 037816          369 GVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALE  445 (648)
Q Consensus       369 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~  445 (648)
                      .+.|++..|.-.|+..++.. |-+...|..|.......++-..|+..+.+..   +.|....-.|.-.|...|.-.+|+.
T Consensus       296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~  374 (579)
T KOG1125|consen  296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK  374 (579)
T ss_pred             HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence            35566666666666666654 5566777777777777777777777776654   3356677777778888888888888


Q ss_pred             HHHHHHHcCCC--------CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHH
Q 037816          446 LYEEMKLEGVE--------PTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSF  517 (648)
Q Consensus       446 ~~~~m~~~~~~--------p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  517 (648)
                      .+++-+....+        ++...-..  ..+.....+....++|-++....+..+|+.+...|.-.|--.|.+++|...
T Consensus       375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc  452 (579)
T KOG1125|consen  375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC  452 (579)
T ss_pred             HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence            88887653310        00000000  122333345566666666665446668999999999999999999999999


Q ss_pred             HHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037816          518 IERM-PVKPD-VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMG  591 (648)
Q Consensus       518 ~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  591 (648)
                      |+.+ .++|+ ...||-|..+++...+.++|+..|.+++++.|.-..+.+.|+-.|...|.|+||.+.|=..+...
T Consensus       453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq  528 (579)
T KOG1125|consen  453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ  528 (579)
T ss_pred             HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence            9998 77775 67799999999999999999999999999999999999999999999999999999988876653

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.88  E-value=3.7e-08  Score=93.77  Aligned_cols=249  Identities=10%  Similarity=0.059  Sum_probs=120.2

Q ss_pred             HHHHhcCCHHHHHHHHHhccCCC----cccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChh
Q 037816          300 DMYSKCGSVEDAWQIFEFAEELD----GVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLG  375 (648)
Q Consensus       300 ~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~  375 (648)
                      +-+.-.|++..++.-.+ ....+    ......+.+++...|+++.++.   ++.... .|.......+...+...++-+
T Consensus         9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e   83 (290)
T PF04733_consen    9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKE   83 (290)
T ss_dssp             HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred             HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchH
Confidence            34555677777775554 22211    2233445667777777665443   222222 555555554444444333333


Q ss_pred             HHHHHHHHHHHhCCC-CchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 037816          376 LGKQIHSLIIKSDFT-SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG  454 (648)
Q Consensus       376 ~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~  454 (648)
                      .+..-++.....+.. .++.+.......+...|++++|++++...  .+.......+..|.+.++++.|.+.++.|.+. 
T Consensus        84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~-  160 (290)
T PF04733_consen   84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI-  160 (290)
T ss_dssp             CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc-
Confidence            333333332222222 22233333334455567777777666654  34555555666666777777777777766653 


Q ss_pred             CCCCHHHHHHHHHHHh----ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHH
Q 037816          455 VEPTDVTFLSLLHACS----HVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVL  528 (648)
Q Consensus       455 ~~p~~~~~~~ll~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~  528 (648)
                       ..|. +...+..++.    ..+.+.+|..+|+++.+  ...+++.+.+.+..++...|++++|.+++.+. ...| ++.
T Consensus       161 -~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d  236 (290)
T PF04733_consen  161 -DEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPD  236 (290)
T ss_dssp             -SCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHH
T ss_pred             -CCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHH
Confidence             2332 2333333321    22346666666666654  34455555566666666666666666655554 2222 344


Q ss_pred             HHHHHHHHHHHcCCh-HHHHHHHHHHHhcCCCC
Q 037816          529 VWQALLGACSIHGDS-EMGKYAAEKLFLAQPDS  560 (648)
Q Consensus       529 ~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~p~~  560 (648)
                      ++..++.+....|+. +.+.+++.++....|..
T Consensus       237 ~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h  269 (290)
T PF04733_consen  237 TLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH  269 (290)
T ss_dssp             HHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence            444444444455544 44555555555555554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.87  E-value=8.3e-06  Score=82.45  Aligned_cols=429  Identities=13%  Similarity=0.120  Sum_probs=236.9

Q ss_pred             CChhHHHHhhccCCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHH
Q 037816          103 DQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLV  182 (648)
Q Consensus       103 g~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~  182 (648)
                      .++.+|..+|-+-..     -..-|..|....++++|+.+-+-   .|. |.-...-.+-++++...|+-+.|-.+-   
T Consensus       545 kkfk~ae~ifleqn~-----te~aigmy~~lhkwde~i~lae~---~~~-p~~eklk~sy~q~l~dt~qd~ka~elk---  612 (1636)
T KOG3616|consen  545 KKFKEAEMIFLEQNA-----TEEAIGMYQELHKWDEAIALAEA---KGH-PALEKLKRSYLQALMDTGQDEKAAELK---  612 (1636)
T ss_pred             hhhhHHHHHHHhccc-----HHHHHHHHHHHHhHHHHHHHHHh---cCC-hHHHHHHHHHHHHHHhcCchhhhhhhc---
Confidence            456777777644321     23445666666778887776543   121 221112333344455555555544432   


Q ss_pred             HHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccC--CCCcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChh--
Q 037816          183 YLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR--VRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSL--  258 (648)
Q Consensus       183 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--  258 (648)
                           ..+-.. -+-|..|.+.|.+.+|.+....-.  ..|......+..++.+..-+++|-++|+++..    |+..  
T Consensus       613 -----~sdgd~-laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d----~dkale  682 (1636)
T KOG3616|consen  613 -----ESDGDG-LAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHD----FDKALE  682 (1636)
T ss_pred             -----cccCcc-HHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC----HHHHHH
Confidence                 111122 234677777877777766543221  23333344444444444444444444444432    1100  


Q ss_pred             ------hHHHH-------------------HHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHH
Q 037816          259 ------TYLSS-------------------VMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQ  313 (648)
Q Consensus       259 ------t~~~l-------------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  313 (648)
                            .|...                   -..+...|+++.|..-|-+..         ....-+.+......+.+|+.
T Consensus       683 ~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~  753 (1636)
T KOG3616|consen  683 CFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAIS  753 (1636)
T ss_pred             HHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHh
Confidence                  00000                   001111122222221111110         11223445556677888888


Q ss_pred             HHHhccCCCcc--cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCC
Q 037816          314 IFEFAEELDGV--SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTS  391 (648)
Q Consensus       314 ~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  391 (648)
                      +++.+.+.++.  -|..+...|...|+++.|.++|.+.         ..+.-.|..|.+.|++..|.++-.+.  .|...
T Consensus       754 ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~--~~~e~  822 (1636)
T KOG3616|consen  754 ILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEEC--HGPEA  822 (1636)
T ss_pred             HHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHh--cCchh
Confidence            88877775443  3666777888888888888887553         23445577788888888887765443  34345


Q ss_pred             chhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 037816          392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSH  471 (648)
Q Consensus       392 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~  471 (648)
                      ....|-+-..-+-..|++.+|+++|-.+..|+.     .|..|-+.|..+..+++..+-.-   ..-..|...+..-+..
T Consensus       823 t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~---d~l~dt~~~f~~e~e~  894 (1636)
T KOG3616|consen  823 TISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHG---DHLHDTHKHFAKELEA  894 (1636)
T ss_pred             HHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhCh---hhhhHHHHHHHHHHHh
Confidence            556666666667778888888888888777764     35667788888888777665331   1123456667777888


Q ss_pred             cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCC-C---HHHH------HHHHHHHHHcC
Q 037816          472 VGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKP-D---VLVW------QALLGACSIHG  541 (648)
Q Consensus       472 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~---~~~~------~~l~~~~~~~g  541 (648)
                      .|++..|..-|-+...          |.+-+++|-..+.|++|.++-+.-+-.. .   ...|      .+.++.+-++|
T Consensus       895 ~g~lkaae~~flea~d----------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~g  964 (1636)
T KOG3616|consen  895 EGDLKAAEEHFLEAGD----------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHG  964 (1636)
T ss_pred             ccChhHHHHHHHhhhh----------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhh
Confidence            8888888887766643          5566777878888888877766542110 0   1111      11122233444


Q ss_pred             ChHHHHHHH------HHHH-----hcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037816          542 DSEMGKYAA------EKLF-----LAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMG  591 (648)
Q Consensus       542 ~~~~A~~~~------~~~~-----~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  591 (648)
                      -.+.|+.+.      +-+.     .....-+.+...++..+...|++++|-+.|-+..+.+
T Consensus       965 ll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen  965 LLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred             hHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence            444444321      1111     1122334667777788888899999977776665543

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.86  E-value=7.7e-06  Score=82.37  Aligned_cols=259  Identities=10%  Similarity=-0.012  Sum_probs=157.0

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHH---HHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC
Q 037816          331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSA---VLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCG  407 (648)
Q Consensus       331 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~---ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  407 (648)
                      ..+...|++++|.+.+++..+.. +.+...+..   ........+....+.+.+.. .....+........+...+...|
T Consensus        51 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G  128 (355)
T cd05804          51 LSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAG  128 (355)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcC
Confidence            34567788888888888887753 333333332   11111223445555554443 11122233344456667788899


Q ss_pred             CHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHhccCcHHHHHHH
Q 037816          408 DLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGV-EPTD--VTFLSLLHACSHVGLVNKGMEF  481 (648)
Q Consensus       408 ~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~~--~~~~~ll~~~~~~g~~~~A~~~  481 (648)
                      ++++|...+++..   +.+...+..+...+...|++++|...+++...... .|+.  ..|..+...+...|++++|..+
T Consensus       129 ~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~  208 (355)
T cd05804         129 QYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAI  208 (355)
T ss_pred             CHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHH
Confidence            9999999998875   33566778888889999999999999998876431 1232  2455677788899999999999


Q ss_pred             HHHhHHhcCCCCChhHH-H--HHHHHhhhcCCHHHHHHH---HHh---C-CCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 037816          482 LKSMTEVHRISPRAEHY-A--CVVDMVGRAGLLIEARSF---IER---M-PVKPDVLVWQALLGACSIHGDSEMGKYAAE  551 (648)
Q Consensus       482 ~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~A~~~---~~~---~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~  551 (648)
                      +++........+..... +  .++..+...|....+.+.   ...   . ..............++...|+.+.|...++
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~  288 (355)
T cd05804         209 YDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLA  288 (355)
T ss_pred             HHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            99985421111222111 1  223333344432222222   111   1 111112222345666788899999999998


Q ss_pred             HHHhcCC---------CCCccHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037816          552 KLFLAQP---------DSPAPYILMANIYSCSGRWKERAKAIKRMKEMG  591 (648)
Q Consensus       552 ~~~~~~p---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  591 (648)
                      .+....-         .........+.++...|++++|.+.+......+
T Consensus       289 ~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a  337 (355)
T cd05804         289 ALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL  337 (355)
T ss_pred             HHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            8864221         123455666777889999999999999887654

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.86  E-value=4.2e-06  Score=82.04  Aligned_cols=436  Identities=13%  Similarity=0.040  Sum_probs=246.8

Q ss_pred             HHHhccCCCcchhHHHHHHhhhcCCCCCcCcCCCCChHHHHHHHHHHHhcCCChhHHHHhhccCC--CCC-cccHHHHHH
Q 037816           52 SISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMP--MRD-TVSWNTMVS  128 (648)
Q Consensus        52 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~-~~~y~~li~  128 (648)
                      .+....|+++.|...|...+..  .         |+|.+.|+.-..+|++.|++++|++--.+-.  .|+ ...|+....
T Consensus        10 naa~s~~d~~~ai~~~t~ai~l--~---------p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Ga   78 (539)
T KOG0548|consen   10 NAAFSSGDFETAIRLFTEAIML--S---------PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGA   78 (539)
T ss_pred             HhhcccccHHHHHHHHHHHHcc--C---------CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHH
Confidence            4567789999999999999877  2         6788899999999999999999987766655  344 346999999


Q ss_pred             HHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHH-----HHhHh
Q 037816          129 GFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALI-----TSYFK  203 (648)
Q Consensus       129 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li-----~~~~~  203 (648)
                      ++.-.|++++|+.-|.+=++..  |+....+..+..+..    .+.+.     +.   .--++..|..+.     +.+..
T Consensus        79 a~~~lg~~~eA~~ay~~GL~~d--~~n~~L~~gl~~a~~----~~~~~-----~~---~~~~p~~~~~l~~~p~t~~~~~  144 (539)
T KOG0548|consen   79 ALFGLGDYEEAILAYSEGLEKD--PSNKQLKTGLAQAYL----EDYAA-----DQ---LFTKPYFHEKLANLPLTNYSLS  144 (539)
T ss_pred             HHHhcccHHHHHHHHHHHhhcC--CchHHHHHhHHHhhh----HHHHh-----hh---hccCcHHHHHhhcChhhhhhhc
Confidence            9999999999999999977764  777656666666651    11111     10   011222222211     11111


Q ss_pred             cCChhHHHHHhcccCCCCccc---HHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhH---HHHHHHhhccCChHHHH
Q 037816          204 CGSSSSGRKVFGEMRVRNVIT---WTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTY---LSSVMACSGLQALCEGR  277 (648)
Q Consensus       204 ~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~---~~ll~~~~~~~~~~~a~  277 (648)
                      .-.+-.-++.+..-+. ++-.   ...++.+.......+.-     .+...|+.+....-   ..........++..+-.
T Consensus       145 ~~~~~~~l~~~~~~p~-~l~~~l~d~r~m~a~~~l~~~~~~-----~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~  218 (539)
T KOG0548|consen  145 DPAYVKILEIIQKNPT-SLKLYLNDPRLMKADGQLKGVDEL-----LFYASGIEILASMAEPCKQEHNGFPIIEDNTEER  218 (539)
T ss_pred             cHHHHHHHHHhhcCcH-hhhcccccHHHHHHHHHHhcCccc-----cccccccccCCCCCCcccccCCCCCccchhHHHH
Confidence            1122222222221110 0000   11111111111000000     11111111000000   00000000000000000


Q ss_pred             HHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCC--CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 037816          278 QIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEEL--DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIE  355 (648)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~  355 (648)
                      +         ...-..-...+.++..+..+++.|.+.+....+.  ++.-++....+|...|.+...........+.|..
T Consensus       219 ~---------~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre  289 (539)
T KOG0548|consen  219 R---------VKEKAHKEKELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE  289 (539)
T ss_pred             H---------HHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH
Confidence            0         0001112244666666777777777777666543  3333555666777777777777766666555522


Q ss_pred             cC------HHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC--CCCh-hH
Q 037816          356 ID------PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA--PRNS-VS  426 (648)
Q Consensus       356 p~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~-~~  426 (648)
                      .-      ...+..+-.++.+.++++.+...|.+.......|+.         ..+....+++........  .|.. .-
T Consensus       290 ~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~A~e  360 (539)
T KOG0548|consen  290 LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEKAEE  360 (539)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhHHHH
Confidence            11      112222334566678888999998887655444432         223344555555544332  2222 11


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhh
Q 037816          427 WNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG  506 (648)
Q Consensus       427 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~  506 (648)
                      ...-...+.+.|++..|+..|.+++++. +-|...|....-+|.+.|.+..|+.-.+...+.  -++....|..=..++.
T Consensus       361 ~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~  437 (539)
T KOG0548|consen  361 EREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALR  437 (539)
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHH
Confidence            2222567888999999999999999976 447888999999999999999999988888763  2334555555566666


Q ss_pred             hcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHH
Q 037816          507 RAGLLIEARSFIERM-PVKPDVLVWQALLGACSI  539 (648)
Q Consensus       507 ~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~  539 (648)
                      -..++++|++.|.+. ...|+..-+.--+.-|..
T Consensus       438 ~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~  471 (539)
T KOG0548|consen  438 AMKEYDKALEAYQEALELDPSNAEAIDGYRRCVE  471 (539)
T ss_pred             HHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence            777899999999888 556665544444444443

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.82  E-value=2.7e-07  Score=87.94  Aligned_cols=245  Identities=12%  Similarity=0.010  Sum_probs=155.3

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHH
Q 037816          331 VGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLE  410 (648)
Q Consensus       331 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  410 (648)
                      +.+.-.|++..++.-.+ ........+......+.+++...|+.+.+   ..++.... +|.......+...+...++-+
T Consensus         9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~-~~~l~av~~la~y~~~~~~~e   83 (290)
T PF04733_consen    9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSV---LSEIKKSS-SPELQAVRLLAEYLSSPSDKE   83 (290)
T ss_dssp             HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHH---HHHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred             HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHH---HHHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence            44556788888876555 22222222344555666777777776643   33333333 566666655555444435566


Q ss_pred             HHHHHHhhcC-CC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 037816          411 DSIKVFSRMA-PR----NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSM  485 (648)
Q Consensus       411 ~A~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~  485 (648)
                      .+..-+++.. .+    +..........+...|++++|++++.+-      .+.......+..+.+.++++.|.+.++.|
T Consensus        84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~  157 (290)
T PF04733_consen   84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM  157 (290)
T ss_dssp             CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            6666665443 22    2222222234456678888888887642      45566677788888899999999999888


Q ss_pred             HHhcCCCCChhHHHHHHHHhh----hcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 037816          486 TEVHRISPRAEHYACVVDMVG----RAGLLIEARSFIERM--PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD  559 (648)
Q Consensus       486 ~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  559 (648)
                      .+   +..| .+...+..++.    -.+.+.+|..+|+++  ...+++.+.+.+..++...|++++|..+++++++.+|.
T Consensus       158 ~~---~~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~  233 (290)
T PF04733_consen  158 QQ---IDED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN  233 (290)
T ss_dssp             HC---CSCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred             Hh---cCCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence            65   2333 33334444433    234688899999988  45577888888888888999999999999998888898


Q ss_pred             CCccHHHHHHHHHhcCCh-HHHHHHHHHHHhC
Q 037816          560 SPAPYILMANIYSCSGRW-KERAKAIKRMKEM  590 (648)
Q Consensus       560 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~  590 (648)
                      ++.+...++.+....|+. +.+.+++.++.+.
T Consensus       234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~  265 (290)
T PF04733_consen  234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS  265 (290)
T ss_dssp             HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred             CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence            888888888888888888 6677788887664

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.82  E-value=4.3e-06  Score=75.55  Aligned_cols=388  Identities=11%  Similarity=0.035  Sum_probs=189.8

Q ss_pred             HHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccCC--CCcccHHH-HHHHHHH
Q 037816          158 SFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV--RNVITWTA-VISGLVQ  234 (648)
Q Consensus       158 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~~~~~  234 (648)
                      -|..++..+.+..+++.+.+++..-.+.. +.+....+.|..+|-...++..|...++.+..  |...-|.. -...+.+
T Consensus        12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~   90 (459)
T KOG4340|consen   12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYK   90 (459)
T ss_pred             chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH
Confidence            34555555555555555555554444332 22444455555555555566666555555542  22222221 1344455


Q ss_pred             CCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 037816          235 NQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQI  314 (648)
Q Consensus       235 ~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  314 (648)
                      ++.+..|+.+...|.+.   |+...-..-+.+..                                 .-..+++..+..+
T Consensus        91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAI---------------------------------kYse~Dl~g~rsL  134 (459)
T KOG4340|consen   91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAI---------------------------------KYSEGDLPGSRSL  134 (459)
T ss_pred             hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHH---------------------------------hcccccCcchHHH
Confidence            55555565555555331   22111111111111                                 1123444444444


Q ss_pred             HHhccC-CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCc-
Q 037816          315 FEFAEE-LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN-  392 (648)
Q Consensus       315 ~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-  392 (648)
                      .++... .+..+.+.......+.|+++.|++-|+...+-+--.....|+..+ ++.+.++.+.|.++..++++.|++.. 
T Consensus       135 veQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HP  213 (459)
T KOG4340|consen  135 VEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHP  213 (459)
T ss_pred             HHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCC
Confidence            444442 233333333333444555555555555544422111223333332 22334455555555555554443211 


Q ss_pred             ---------------------------hhHHHHHHHHHHhCCCHHHHHHHHhhcCCC-----ChhHHHHHHHHHHHcCCh
Q 037816          393 ---------------------------PFVNNGLINMYSKCGDLEDSIKVFSRMAPR-----NSVSWNSMIAAFARHGNG  440 (648)
Q Consensus       393 ---------------------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~  440 (648)
                                                 +..+|.-...+.+.|+++.|.+.+..|+++     |++|...+.-.- ..+++
T Consensus       214 ElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p  292 (459)
T KOG4340|consen  214 ELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARP  292 (459)
T ss_pred             ccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCc
Confidence                                       112232333456789999999999999854     566655443221 23455


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC-CChhHHHHHHHHhh-hcCCHHHHHHHH
Q 037816          441 FKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRIS-PRAEHYACVVDMVG-RAGLLIEARSFI  518 (648)
Q Consensus       441 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~-~~g~~~~A~~~~  518 (648)
                      .+..+-++-+...+ +--..||..++-.||+..-++.|-.++.+-... -.. .+...|+. ++++. -.-..++|.+-+
T Consensus       293 ~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly~L-LdaLIt~qT~pEea~KKL  369 (459)
T KOG4340|consen  293 TEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAENAHL-TYKFLTPYLYDL-LDALITCQTAPEEAFKKL  369 (459)
T ss_pred             cccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcch-hHHHhhHHHHHH-HHHHHhCCCCHHHHHHHH
Confidence            55555566666543 235678999999999999999888887654321 111 14444443 33333 334566666655


Q ss_pred             HhCCCCCCHHHHHHHHHH-HHHcCC----hHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816          519 ERMPVKPDVLVWQALLGA-CSIHGD----SEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       519 ~~~~~~p~~~~~~~l~~~-~~~~g~----~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  590 (648)
                      +.+........-...+.. -.+..+    ...|++-+++.+++--   .+....++.|.+..++..+.++|..-.+-
T Consensus       370 ~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Svef  443 (459)
T KOG4340|consen  370 DGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVEF  443 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence            544100000001111111 111222    2223334444444332   24556677888999999999999887664

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.81  E-value=2.9e-05  Score=81.60  Aligned_cols=126  Identities=10%  Similarity=-0.019  Sum_probs=67.6

Q ss_pred             hHHHHHHHHhccCCCcchhHHHHHHhhhcCCCCCcCcCCCCChHHHHHHHHHHHhcCCChhHHHHhhccCCCCC---ccc
Q 037816           46 DISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRD---TVS  122 (648)
Q Consensus        46 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~  122 (648)
                      .|..+-.-|....|...|...|....+.  .         +.+...+..+...|++..+++.|..+.-...+.+   ...
T Consensus       494 af~~LG~iYrd~~Dm~RA~kCf~KAFeL--D---------atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k  562 (1238)
T KOG1127|consen  494 AFAFLGQIYRDSDDMKRAKKCFDKAFEL--D---------ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACK  562 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcC--C---------chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHH
Confidence            5666666666666666666666666554  1         3345566666677777777777766632222111   111


Q ss_pred             HH--HHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHH
Q 037816          123 WN--TMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYL  184 (648)
Q Consensus       123 y~--~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  184 (648)
                      +|  ...-.|.+.+++.+|+.-|+...+..  |.+...+..+..+|.+.|....|..++.....
T Consensus       563 ~nW~~rG~yyLea~n~h~aV~~fQsALR~d--PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~  624 (1238)
T KOG1127|consen  563 ENWVQRGPYYLEAHNLHGAVCEFQSALRTD--PKDYNLWLGLGEAYPESGRYSHALKVFTKASL  624 (1238)
T ss_pred             hhhhhccccccCccchhhHHHHHHHHhcCC--chhHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence            11  12223444555555555555554433  55544555555555555555555555554443

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.75  E-value=5.7e-05  Score=77.69  Aligned_cols=347  Identities=12%  Similarity=0.053  Sum_probs=196.4

Q ss_pred             ChHHHHHHHHHH--HhcCCChhHHHHhhccCCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcC--------C-CCCc
Q 037816           87 NATVIWNSLLSF--YLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELG--------F-YQLD  155 (648)
Q Consensus        87 ~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~--------~-~p~~  155 (648)
                      -|..|-.++++.  |.--|+.+.|.+-.+.++  +-..|..+.+.+.+.++.+-|.-.+-.|....        . .|+ 
T Consensus       724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-  800 (1416)
T KOG3617|consen  724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-  800 (1416)
T ss_pred             cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-
Confidence            456677777764  777799999988887776  44668889999998888888777766664321        1 122 


Q ss_pred             HhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccCCC-CcccHHHHHHHHHH
Q 037816          156 QASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVR-NVITWTAVISGLVQ  234 (648)
Q Consensus       156 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~  234 (648)
                      . +-..+.-.....|.+++|..+++.-.+.+         .|=..|...|.+++|.++-+.-..- =..||......+-.
T Consensus       801 e-~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lea  870 (1416)
T KOG3617|consen  801 E-DEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEA  870 (1416)
T ss_pred             c-hhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHh
Confidence            2 33344444567788888888888777643         3445677788888888876543321 12356666666677


Q ss_pred             CCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 037816          235 NQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQI  314 (648)
Q Consensus       235 ~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  314 (648)
                      .++.+.|++.|++...    |--..+..|      ..++...+...+.      ..|...|.--....-..|+.+.|+.+
T Consensus       871 r~Di~~AleyyEK~~~----hafev~rmL------~e~p~~~e~Yv~~------~~d~~L~~WWgqYlES~GemdaAl~~  934 (1416)
T KOG3617|consen  871 RRDIEAALEYYEKAGV----HAFEVFRML------KEYPKQIEQYVRR------KRDESLYSWWGQYLESVGEMDAALSF  934 (1416)
T ss_pred             hccHHHHHHHHHhcCC----hHHHHHHHH------HhChHHHHHHHHh------ccchHHHHHHHHHHhcccchHHHHHH
Confidence            7888888888876421    111111000      0111111111111      22334444444455566777777777


Q ss_pred             HHhccCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchh
Q 037816          315 FEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPF  394 (648)
Q Consensus       315 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  394 (648)
                      |....+     |-.+++..|-.|+.++|.++-++      .-|......+.+.|-..|++.+|..+|.++...       
T Consensus       935 Y~~A~D-----~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf-------  996 (1416)
T KOG3617|consen  935 YSSAKD-----YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQAF-------  996 (1416)
T ss_pred             HHHhhh-----hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH-------
Confidence            766544     55566666677777777766544      235555666677777777777777777655421       


Q ss_pred             HHHHHHHHHHhCCCHH----------------HHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHH--------H
Q 037816          395 VNNGLINMYSKCGDLE----------------DSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE--------M  450 (648)
Q Consensus       395 ~~~~li~~~~~~g~~~----------------~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~--------m  450 (648)
                        ..-|+. |+.++++                .|-++|++..    .-....+..|-+.|.+.+|+++--+        +
T Consensus       997 --snAIRl-cKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g----~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~l 1069 (1416)
T KOG3617|consen  997 --SNAIRL-CKENDMKDRLANLALMSGGSDLVSAARYYEELG----GYAHKAVMLYHKAGMIGKALELAFRTQQFSALDL 1069 (1416)
T ss_pred             --HHHHHH-HHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcc----hhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHH
Confidence              122221 2222222                3333333322    0112234455666666666654322        2


Q ss_pred             HHcCCC--CCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 037816          451 KLEGVE--PTDVTFLSLLHACSHVGLVNKGMEFLKSMTE  487 (648)
Q Consensus       451 ~~~~~~--p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~  487 (648)
                      +..++.  .|+...+...+-++...++++|..++-..++
T Consensus      1070 Ia~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~ 1108 (1416)
T KOG3617|consen 1070 IAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE 1108 (1416)
T ss_pred             HHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            222222  3455555555556666667777666655543

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.71  E-value=2.1e-05  Score=89.90  Aligned_cols=324  Identities=11%  Similarity=-0.017  Sum_probs=201.4

Q ss_pred             hccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC----CC---c-c----cHHHHHHHHHH
Q 037816          268 SGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE----LD---G-V----SMTVILVGFAQ  335 (648)
Q Consensus       268 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~---~-~----~~~~li~~~~~  335 (648)
                      ...|+++.+...+..+.......+..........+...|++++|..++.....    .+   . .    ....+...+..
T Consensus       385 ~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  464 (903)
T PRK04841        385 FNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN  464 (903)
T ss_pred             HhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence            34566666655555442111112222334445556678899998888876532    11   1 0    11122344667


Q ss_pred             cCCHHHHHHHHHHHHHcCCCcCH----HHHHHHHHHHhccCChhHHHHHHHHHHHhCC---CC--chhHHHHHHHHHHhC
Q 037816          336 NGFEEEAMQLFVKMVKAGIEIDP----NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF---TS--NPFVNNGLINMYSKC  406 (648)
Q Consensus       336 ~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~li~~~~~~  406 (648)
                      .|++++|...+++....-...+.    ...+.+...+...|+++.|...+.......-   .+  ....+..+...+...
T Consensus       465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~  544 (903)
T PRK04841        465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ  544 (903)
T ss_pred             CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence            89999999999887763212221    2334455566788999999998887764211   11  123455667778889


Q ss_pred             CCHHHHHHHHhhcCC-------C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcC--CCCC--HHHHHHHHHHHhc
Q 037816          407 GDLEDSIKVFSRMAP-------R----NSVSWNSMIAAFARHGNGFKALELYEEMKLEG--VEPT--DVTFLSLLHACSH  471 (648)
Q Consensus       407 g~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~--~~p~--~~~~~~ll~~~~~  471 (648)
                      |++++|...+++...       +    ....+..+...+...|++++|...+.+.....  ..+.  ...+..+...+..
T Consensus       545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~  624 (903)
T PRK04841        545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA  624 (903)
T ss_pred             CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence            999999988776531       1    12234445566777899999999998876531  1122  2334445566788


Q ss_pred             cCcHHHHHHHHHHhHHhcCCCCChhHH-----HHHHHHhhhcCCHHHHHHHHHhCCC-C-CCH----HHHHHHHHHHHHc
Q 037816          472 VGLVNKGMEFLKSMTEVHRISPRAEHY-----ACVVDMVGRAGLLIEARSFIERMPV-K-PDV----LVWQALLGACSIH  540 (648)
Q Consensus       472 ~g~~~~A~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~-~-p~~----~~~~~l~~~~~~~  540 (648)
                      .|+++.|.+.++..............+     ...+..+...|+.+.|.+.+..... . ...    ..+..+..++...
T Consensus       625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~  704 (903)
T PRK04841        625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL  704 (903)
T ss_pred             cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc
Confidence            999999999988885521111111111     1122445568899999999877611 1 111    1134566778889


Q ss_pred             CChHHHHHHHHHHHhcCC------CCCccHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037816          541 GDSEMGKYAAEKLFLAQP------DSPAPYILMANIYSCSGRWKERAKAIKRMKEMG  591 (648)
Q Consensus       541 g~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  591 (648)
                      |+.++|...++++.....      ....++..++.++.+.|+.++|...+.+..+..
T Consensus       705 g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la  761 (903)
T PRK04841        705 GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA  761 (903)
T ss_pred             CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            999999999999876421      123467778889999999999999999988754

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.71  E-value=6.9e-05  Score=85.76  Aligned_cols=330  Identities=8%  Similarity=-0.033  Sum_probs=209.4

Q ss_pred             HHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcC------CCc--hhHHHHHHHH
Q 037816          230 SGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLAL------QSD--LCIESALMDM  301 (648)
Q Consensus       230 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~  301 (648)
                      ..+...|+++.+..+++.+.......+..........+...|+++++...+......--      .+.  ......+...
T Consensus       382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~  461 (903)
T PRK04841        382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV  461 (903)
T ss_pred             HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence            34455677777777776652211112222233344455677899999998887755311      111  1222334455


Q ss_pred             HHhcCCHHHHHHHHHhccC--C--Cc----ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CcC--HHHHHHHHHHH
Q 037816          302 YSKCGSVEDAWQIFEFAEE--L--DG----VSMTVILVGFAQNGFEEEAMQLFVKMVKAGI---EID--PNMVSAVLGVF  368 (648)
Q Consensus       302 ~~~~~~~~~A~~~~~~~~~--~--~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~p~--~~~~~~ll~~~  368 (648)
                      +...|++++|...++....  +  +.    ...+.+...+...|++++|...+++.....-   .+.  ..++..+...+
T Consensus       462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~  541 (903)
T PRK04841        462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL  541 (903)
T ss_pred             HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence            6788999999999887643  1  11    2334556677889999999999988865311   111  23445556677


Q ss_pred             hccCChhHHHHHHHHHHH----hCCCC---chhHHHHHHHHHHhCCCHHHHHHHHhhcCC------C--ChhHHHHHHHH
Q 037816          369 GVDTSLGLGKQIHSLIIK----SDFTS---NPFVNNGLINMYSKCGDLEDSIKVFSRMAP------R--NSVSWNSMIAA  433 (648)
Q Consensus       369 ~~~~~~~~a~~~~~~~~~----~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~--~~~~~~~l~~~  433 (648)
                      ...|+++.|...+++...    .+...   ....+..+...+...|++++|...+.+...      +  ....+..+...
T Consensus       542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~  621 (903)
T PRK04841        542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI  621 (903)
T ss_pred             HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence            889999999999877654    23211   223445566677788999999988877632      1  12344456667


Q ss_pred             HHHcCChHHHHHHHHHHHHcCCCC-CHHHH-----HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC---hhHHHHHHHH
Q 037816          434 FARHGNGFKALELYEEMKLEGVEP-TDVTF-----LSLLHACSHVGLVNKGMEFLKSMTEVHRISPR---AEHYACVVDM  504 (648)
Q Consensus       434 ~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~-----~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~  504 (648)
                      +...|++++|...+.+........ ....+     ...+..+...|+.+.|..++...... .....   ...+..+..+
T Consensus       622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~  700 (903)
T PRK04841        622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIARA  700 (903)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHH
Confidence            788999999999998886421111 11111     11223445588999999998776541 11111   1113567778


Q ss_pred             hhhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 037816          505 VGRAGLLIEARSFIERM-------PVKPD-VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS  560 (648)
Q Consensus       505 ~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~  560 (648)
                      +...|++++|...+++.       +..++ ..+...+..++...|+.++|...+.++++.....
T Consensus       701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~  764 (903)
T PRK04841        701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRT  764 (903)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence            89999999999998876       22222 3455666778899999999999999999876543

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.71  E-value=1.5e-06  Score=78.24  Aligned_cols=147  Identities=9%  Similarity=0.090  Sum_probs=112.4

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCC
Q 037816          431 IAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL  510 (648)
Q Consensus       431 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  510 (648)
                      +..|...|+++.+....+.+..    |.        ..+...++.+++...++...+  .-+.+...|..+...|...|+
T Consensus        23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~   88 (198)
T PRK10370         23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRND   88 (198)
T ss_pred             HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCC
Confidence            3467778887776444322221    11        012236677788888888776  345588889999999999999


Q ss_pred             HHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HHcCC--hHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHH
Q 037816          511 LIEARSFIERM-PVKP-DVLVWQALLGAC-SIHGD--SEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIK  585 (648)
Q Consensus       511 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  585 (648)
                      +++|...|++. ...| +...+..+..++ ...|+  .++|.++++++++.+|+++.++..++..+...|++++|+..++
T Consensus        89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~  168 (198)
T PRK10370         89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ  168 (198)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence            99999999988 5556 466677777764 66676  5999999999999999999999999999999999999999999


Q ss_pred             HHHhCC
Q 037816          586 RMKEMG  591 (648)
Q Consensus       586 ~m~~~~  591 (648)
                      ++.+..
T Consensus       169 ~aL~l~  174 (198)
T PRK10370        169 KVLDLN  174 (198)
T ss_pred             HHHhhC
Confidence            998854

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.70  E-value=1.3e-06  Score=82.18  Aligned_cols=180  Identities=12%  Similarity=0.013  Sum_probs=115.7

Q ss_pred             CchhHHHHHHHHHHhCCCHHHHHHHHhhcCC--C-Ch---hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH----
Q 037816          391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAP--R-NS---VSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDV----  460 (648)
Q Consensus       391 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~----  460 (648)
                      .....+..+...+...|++++|...|+++..  | +.   ..+..+..++...|++++|...++++.+..  |+..    
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~  108 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDADY  108 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchHH
Confidence            3445566666777777888888777776642  2 21   345666677777778888888887777643  3211    


Q ss_pred             HHHHHHHHHhcc--------CcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHH
Q 037816          461 TFLSLLHACSHV--------GLVNKGMEFLKSMTEVHRISPR-AEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQ  531 (648)
Q Consensus       461 ~~~~ll~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~  531 (648)
                      ++..+..++...        |++++|.+.++.+...   .|+ ...+..+.....    .....           .....
T Consensus       109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~  170 (235)
T TIGR03302       109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNRL-----------AGKEL  170 (235)
T ss_pred             HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHHH-----------HHHHH
Confidence            333444444433        5677777777777653   232 222222211100    00000           00112


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHhcCCCCC---ccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816          532 ALLGACSIHGDSEMGKYAAEKLFLAQPDSP---APYILMANIYSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       532 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  590 (648)
                      .+...+.+.|++++|+..++++++..|+++   ..+..++.++...|++++|..+++.+...
T Consensus       171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            455678899999999999999999877654   68899999999999999999999988764

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.68  E-value=3.1e-05  Score=77.99  Aligned_cols=196  Identities=9%  Similarity=-0.042  Sum_probs=99.4

Q ss_pred             CCCcchHHHHHHHHhccCCCcchhHHHHHHhhhcCCCCCcCcCCCCChHH-HHHHHHHHHhcCCChhHHHHhhccCC--C
Q 037816           41 LDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATV-IWNSLLSFYLKCDQMRNAVKLFDDMP--M  117 (648)
Q Consensus        41 p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~--~  117 (648)
                      |+.+..|..+...+...|+.+.+...+....+..+.         .++.. ........+...|++++|...++...  .
T Consensus         3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~   73 (355)
T cd05804           3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAA---------RATERERAHVEALSAWIAGDLPKALALLEQLLDDY   73 (355)
T ss_pred             CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcc---------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            444455556666666666666666666665555100         11211 11112223455677777777766654  2


Q ss_pred             C-CcccHHHHHHHHHh----cCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChh
Q 037816          118 R-DTVSWNTMVSGFLR----NGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVT  192 (648)
Q Consensus       118 ~-~~~~y~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  192 (648)
                      | |...+.. ...+..    .+....+.+.+..  ..+..|+.......+...+...|+++.|...++...+.. +.+..
T Consensus        74 P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~  149 (355)
T cd05804          74 PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAW  149 (355)
T ss_pred             CCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcH
Confidence            2 2222221 112222    2333344444333  112223333233334445666667777777776666654 44455


Q ss_pred             HHHHHHHHhHhcCChhHHHHHhcccCCC-----Cc--ccHHHHHHHHHHCCCchHHHHHHHHHH
Q 037816          193 VGNALITSYFKCGSSSSGRKVFGEMRVR-----NV--ITWTAVISGLVQNQLYEEGLKLFVKMH  249 (648)
Q Consensus       193 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~--~~~~~li~~~~~~g~~~~a~~~~~~m~  249 (648)
                      .+..+..++...|++++|...+++....     +.  ..|..+...+...|++++|+.+|++..
T Consensus       150 ~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~  213 (355)
T cd05804         150 AVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI  213 (355)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            5666666666777777777776655421     11  123345566666777777777776664

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.67  E-value=9.1e-05  Score=68.59  Aligned_cols=308  Identities=11%  Similarity=0.082  Sum_probs=187.5

Q ss_pred             HHHHHHhHhcCChhHHHHHhcccCCCCcccHHHHH---HHHHHCCCchHHHHHHHHHHhCCCCCChhhHH-HHHHHhhcc
Q 037816          195 NALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVI---SGLVQNQLYEEGLKLFVKMHLGLINPNSLTYL-SSVMACSGL  270 (648)
Q Consensus       195 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~-~ll~~~~~~  270 (648)
                      --+...+...|++..|+.-|....+-|...|.++.   ..|...|+...|+.=|....+  .+||-..-. .-...+.+.
T Consensus        42 lElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~  119 (504)
T KOG0624|consen   42 LELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQ  119 (504)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhc
Confidence            34455566667777777777777766666666654   456667777777777766655  456533211 111233455


Q ss_pred             CChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Q 037816          271 QALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMV  350 (648)
Q Consensus       271 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  350 (648)
                      |.++.|..=|+.+++......     ....++.+.--.++-+.+            ...+..+...|+...|+.....+.
T Consensus       120 Gele~A~~DF~~vl~~~~s~~-----~~~eaqskl~~~~e~~~l------------~~ql~s~~~~GD~~~ai~~i~~ll  182 (504)
T KOG0624|consen  120 GELEQAEADFDQVLQHEPSNG-----LVLEAQSKLALIQEHWVL------------VQQLKSASGSGDCQNAIEMITHLL  182 (504)
T ss_pred             ccHHHHHHHHHHHHhcCCCcc-----hhHHHHHHHHhHHHHHHH------------HHHHHHHhcCCchhhHHHHHHHHH
Confidence            666666666666555431110     011111111111111111            122344556777777888777777


Q ss_pred             HcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC--CCh----
Q 037816          351 KAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP--RNS----  424 (648)
Q Consensus       351 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~----  424 (648)
                      +-. +.|...+..-..+|...|.+..|+.-+...-+.. ..++...--+-..+...|+.+.++...++..+  ||.    
T Consensus       183 Ei~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf  260 (504)
T KOG0624|consen  183 EIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCF  260 (504)
T ss_pred             hcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHH
Confidence            643 4455566666677777788777777666666554 33344444456667777888877777776653  221    


Q ss_pred             hHHHHH---------HHHHHHcCChHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC
Q 037816          425 VSWNSM---------IAAFARHGNGFKALELYEEMKLEGVEPTDV---TFLSLLHACSHVGLVNKGMEFLKSMTEVHRIS  492 (648)
Q Consensus       425 ~~~~~l---------~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~  492 (648)
                      ..|..|         +......++|.++++..+...+........   .+..+-.++...+++.+|++...++..   +.
T Consensus       261 ~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~---~d  337 (504)
T KOG0624|consen  261 PFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD---ID  337 (504)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh---cC
Confidence            122221         223455678888888888887754221222   344566777888999999999999975   45


Q ss_pred             C-ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC
Q 037816          493 P-RAEHYACVVDMVGRAGLLIEARSFIERM-PVKPD  526 (648)
Q Consensus       493 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~  526 (648)
                      | |..++.--..+|.-...++.|+.-|+.. ...++
T Consensus       338 ~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s  373 (504)
T KOG0624|consen  338 PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES  373 (504)
T ss_pred             chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence            6 5889988899999999999999999887 44443

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.66  E-value=5.6e-05  Score=68.55  Aligned_cols=312  Identities=11%  Similarity=0.066  Sum_probs=187.6

Q ss_pred             HHHHHHHHhcCCChhHHHHhhccCCCC---CcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHH-HHHHHhh
Q 037816           92 WNSLLSFYLKCDQMRNAVKLFDDMPMR---DTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFT-IILSACD  167 (648)
Q Consensus        92 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-~ll~~~~  167 (648)
                      +.+.+..+.+..++++|++++..-.+.   +....+.|..+|....++..|-+.|+++-...  |... -|. .-...+.
T Consensus        13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~-qYrlY~AQSLY   89 (459)
T KOG4340|consen   13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELE-QYRLYQAQSLY   89 (459)
T ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHH-HHHHHHHHHHH
Confidence            445556667788999999998877643   55667778888999999999999999987764  4443 332 2344556


Q ss_pred             ccCChHHHHHHHHHHHHhCCCCChhHHHHHHHH--hHhcCChhHHHHHhcccC-CCCcccHHHHHHHHHHCCCchHHHHH
Q 037816          168 RSELSLVSKMIHCLVYLCGYEEEVTVGNALITS--YFKCGSSSSGRKVFGEMR-VRNVITWTAVISGLVQNQLYEEGLKL  244 (648)
Q Consensus       168 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~  244 (648)
                      ..+.+..|.++...|...   |+...-..-+.+  .-..+++..+..+++..+ +.+..+.+.......+.|+++.|++-
T Consensus        90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqk  166 (459)
T KOG4340|consen   90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQK  166 (459)
T ss_pred             HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHH
Confidence            667777888877776532   222222222222  234688999999999988 46667777777777899999999999


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHH----HHHHHHHHhcCCHHH-HHHHHHhcc
Q 037816          245 FVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIE----SALMDMYSKCGSVED-AWQIFEFAE  319 (648)
Q Consensus       245 ~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~-A~~~~~~~~  319 (648)
                      |+...+-+--.....|+..+ +..+.|+.+.|.+...++.++|+...+..-    ...+++ ...|+.-. +..-     
T Consensus       167 FqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgNt~~lh~Sa-----  239 (459)
T KOG4340|consen  167 FQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGNTLVLHQSA-----  239 (459)
T ss_pred             HHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccchHHHHHHH-----
Confidence            99986644333455676555 445678999999999999998864322110    000000 00000000 0000     


Q ss_pred             CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHH
Q 037816          320 ELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAG-IEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNG  398 (648)
Q Consensus       320 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  398 (648)
                        -+..+|.-...+.+.++++.|.+.+..|..+. -..|++|...+.-. ...+++....+-++.+...+ |-...|+..
T Consensus       240 --l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ETFAN  315 (459)
T KOG4340|consen  240 --LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFPPETFAN  315 (459)
T ss_pred             --HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CCChHHHHH
Confidence              01123333334556677777777666664221 23455555443321 12233333444444444442 344566777


Q ss_pred             HHHHHHhCCCHHHHHHHHhhcC
Q 037816          399 LINMYSKCGDLEDSIKVFSRMA  420 (648)
Q Consensus       399 li~~~~~~g~~~~A~~~~~~~~  420 (648)
                      ++-.||+..-++-|-+++.+-.
T Consensus       316 lLllyCKNeyf~lAADvLAEn~  337 (459)
T KOG4340|consen  316 LLLLYCKNEYFDLAADVLAENA  337 (459)
T ss_pred             HHHHHhhhHHHhHHHHHHhhCc
Confidence            7777777777777777776544

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.65  E-value=5.3e-05  Score=79.72  Aligned_cols=443  Identities=13%  Similarity=0.079  Sum_probs=227.0

Q ss_pred             cHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhC-CCCChhHHHHHHHH
Q 037816          122 SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCG-YEEEVTVGNALITS  200 (648)
Q Consensus       122 ~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~  200 (648)
                      .|..|...|...-+...|...|...-+..  ++..+....+...+++..+++.|..+.-..-+.. ...-...|....-.
T Consensus       494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y  571 (1238)
T KOG1127|consen  494 AFAFLGQIYRDSDDMKRAKKCFDKAFELD--ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY  571 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence            45555555555555566666666655543  4444455566666666666666665521111100 01111222233334


Q ss_pred             hHhcCChhHHHHHhcccCC---CCcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHH--hhccCChHH
Q 037816          201 YFKCGSSSSGRKVFGEMRV---RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMA--CSGLQALCE  275 (648)
Q Consensus       201 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~--~~~~~~~~~  275 (648)
                      |.+.++...|..-|+....   .|...|..+..+|...|++..|+++|.+...  +.|+. +|...-.+  -+..|.+.+
T Consensus       572 yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s-~y~~fk~A~~ecd~GkYke  648 (1238)
T KOG1127|consen  572 YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLS-KYGRFKEAVMECDNGKYKE  648 (1238)
T ss_pred             ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHh-HHHHHHHHHHHHHhhhHHH
Confidence            5556666666666665542   2445566666667777777777777666644  33432 22222211  133455666


Q ss_pred             HHHHHHHHHHhc------CCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC-----------CCcccHHHHHHHHHHcCC
Q 037816          276 GRQIHGILWKLA------LQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE-----------LDGVSMTVILVGFAQNGF  338 (648)
Q Consensus       276 a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~~~  338 (648)
                      +...+.......      ..--..++-.+...+.-.|-..+|.+.++.-.+           .+...|-.+         
T Consensus       649 ald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~a---------  719 (1238)
T KOG1127|consen  649 ALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVA---------  719 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHH---------
Confidence            655555543221      000111111111122222222233333322111           011111111         


Q ss_pred             HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCCh---h---HHHHHHHHHHHhCCCCchhHHHHHHHHHHh----C--
Q 037816          339 EEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSL---G---LGKQIHSLIIKSDFTSNPFVNNGLINMYSK----C--  406 (648)
Q Consensus       339 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~--  406 (648)
                       ..|..+|-... .. .|+.....++..-....+..   +   .+.+.+-.-.  ....++..|..|+..|.+    .  
T Consensus       720 -sdac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl--sl~~~~~~WyNLGinylr~f~~l~e  794 (1238)
T KOG1127|consen  720 -SDACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL--SLAIHMYPWYNLGINYLRYFLLLGE  794 (1238)
T ss_pred             -hHHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH--HHhhccchHHHHhHHHHHHHHHcCC
Confidence             12223333322 11 23322222222212222222   1   1111111111  112223444444443333    1  


Q ss_pred             --CCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 037816          407 --GDLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF  481 (648)
Q Consensus       407 --g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~  481 (648)
                        .+...|...+....   ..+..+||.|.-. ...|++.-|.-.|-+-.... +-+..+|..+.-.+....+++.|...
T Consensus       795 t~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~a  872 (1238)
T KOG1127|consen  795 TMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPA  872 (1238)
T ss_pred             cchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHH
Confidence              12335666666544   3466777766554 55677777777776655532 33566777777778889999999999


Q ss_pred             HHHhHHhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHcCChHHHHHH----
Q 037816          482 LKSMTEVHRISP-RAEHYACVVDMVGRAGLLIEARSFIERM-------PVKPDVLVWQALLGACSIHGDSEMGKYA----  549 (648)
Q Consensus       482 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~~g~~~~A~~~----  549 (648)
                      |...+.   +.| +...|-.........|+.-++..+|..-       +--|+..-|.....-....|+.++-+..    
T Consensus       873 f~~~qS---LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki  949 (1238)
T KOG1127|consen  873 FSSVQS---LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKI  949 (1238)
T ss_pred             HHhhhh---cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhh
Confidence            998865   455 6666666666666778888888887652       3345555555555555666666655544    


Q ss_pred             ------HHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHH
Q 037816          550 ------AEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMK  588 (648)
Q Consensus       550 ------~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  588 (648)
                            +++.+...|+...+|...+....+.+.+++|.+...+..
T Consensus       950 ~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli  994 (1238)
T KOG1127|consen  950 SSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI  994 (1238)
T ss_pred             hhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence                  444456789999999999999999999999888877753

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.64  E-value=0.0011  Score=69.47  Aligned_cols=505  Identities=12%  Similarity=0.040  Sum_probs=265.9

Q ss_pred             HhccCCCcchhHHHHHHhhhcCCCCCcCcCCCCChHHHHHHHHHH--HhcCCChhHHHHhhccCCC---CCcccHHHHHH
Q 037816           54 SAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSF--YLKCDQMRNAVKLFDDMPM---RDTVSWNTMVS  128 (648)
Q Consensus        54 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~---~~~~~y~~li~  128 (648)
                      ....+++..|..-.+++.+.            .|+.. |...+.+  +.|.|+.++|..+++....   .|..|...+-.
T Consensus        19 ~ld~~qfkkal~~~~kllkk------------~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~   85 (932)
T KOG2053|consen   19 LLDSSQFKKALAKLGKLLKK------------HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQN   85 (932)
T ss_pred             HhhhHHHHHHHHHHHHHHHH------------CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHH
Confidence            44567889999999999988            55543 3333343  5788999999999988763   37788999999


Q ss_pred             HHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcC-C-
Q 037816          129 GFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCG-S-  206 (648)
Q Consensus       129 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~-  206 (648)
                      +|.+.|+.++|..+|++..+..  |+.. ....+..++.|.+.+..-.++--++.+. ++...+.+=++++.+.... . 
T Consensus        86 ~y~d~~~~d~~~~~Ye~~~~~~--P~ee-ll~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~  161 (932)
T KOG2053|consen   86 VYRDLGKLDEAVHLYERANQKY--PSEE-LLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSE  161 (932)
T ss_pred             HHHHHhhhhHHHHHHHHHHhhC--CcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCC
Confidence            9999999999999999988765  7755 8888899999998888777776666663 3455555555555554431 1 


Q ss_pred             --------hhHHHHHhcccCCCC--ccc---HHHHHHHHHHCCCchHHHHHHH-HHHhCCCCCChhhHHHHHHHhhccCC
Q 037816          207 --------SSSGRKVFGEMRVRN--VIT---WTAVISGLVQNQLYEEGLKLFV-KMHLGLINPNSLTYLSSVMACSGLQA  272 (648)
Q Consensus       207 --------~~~A~~~~~~~~~~~--~~~---~~~li~~~~~~g~~~~a~~~~~-~m~~~~~~p~~~t~~~ll~~~~~~~~  272 (648)
                              ..-|.+.++.+.+.+  ..+   ...-...+-..|++++|++++. ..-+.-...+...-+--+..+...++
T Consensus       162 ~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~  241 (932)
T KOG2053|consen  162 NELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNR  241 (932)
T ss_pred             cccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcC
Confidence                    233455555554332  111   1122344556788999999883 33333333334444455666777888


Q ss_pred             hHHHHHHHHHHHHhcCCCchhHHHHHHHHHH----------------hcCCHHHHHHHHHhccCC-CcccHHHHHHHHHH
Q 037816          273 LCEGRQIHGILWKLALQSDLCIESALMDMYS----------------KCGSVEDAWQIFEFAEEL-DGVSMTVILVGFAQ  335 (648)
Q Consensus       273 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----------------~~~~~~~A~~~~~~~~~~-~~~~~~~li~~~~~  335 (648)
                      +.+..++..++...|...    |...++.+.                ..+..+...+...+.... ...+|-+-+.+..+
T Consensus       242 w~~l~~l~~~Ll~k~~Dd----y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr  317 (932)
T KOG2053|consen  242 WQELFELSSRLLEKGNDD----YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKR  317 (932)
T ss_pred             hHHHHHHHHHHHHhCCcc----hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHH
Confidence            888888888888876332    322222211                122233333332222221 23344444444333


Q ss_pred             ---cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCC--CCchh---HHHHHHHHHHhCC
Q 037816          336 ---NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF--TSNPF---VNNGLINMYSKCG  407 (648)
Q Consensus       336 ---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~---~~~~li~~~~~~g  407 (648)
                         -|+.++++..|-+-.  |-.|   .|..=+..|...=..++-..++.......-  ..+..   .+...+....-.|
T Consensus       318 ~~~~gd~ee~~~~y~~kf--g~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G  392 (932)
T KOG2053|consen  318 YKLIGDSEEMLSYYFKKF--GDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLG  392 (932)
T ss_pred             hcccCChHHHHHHHHHHh--CCCc---HhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhh
Confidence               366666554432221  1111   111111111111122222222222221110  00000   0111111111112


Q ss_pred             C-----HHHHHHHHhhc----CC---------CC---------hhHHHHHHHHHHHcCChH---HHHHHHHHHHHcCCCC
Q 037816          408 D-----LEDSIKVFSRM----AP---------RN---------SVSWNSMIAAFARHGNGF---KALELYEEMKLEGVEP  457 (648)
Q Consensus       408 ~-----~~~A~~~~~~~----~~---------~~---------~~~~~~l~~~~~~~~~~~---~A~~~~~~m~~~~~~p  457 (648)
                      .     -+....++.+.    ..         |+         .-+-+.|+..+-+.++..   +|+-+++.-.... +-
T Consensus       393 ~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~h  471 (932)
T KOG2053|consen  393 LYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PH  471 (932)
T ss_pred             ccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-Cc
Confidence            1     11111111111    10         11         123456667777777654   3444444444432 23


Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC--CHHHHHHHH
Q 037816          458 TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP--DVLVWQALL  534 (648)
Q Consensus       458 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p--~~~~~~~l~  534 (648)
                      |..+-..+|+.|+-.|-+..|...|+.+.-+ .+..|..-|. +...+...|++..+...++.. .+-.  -..+-..+.
T Consensus       472 nf~~KLlLiriY~~lGa~p~a~~~y~tLdIK-~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~  549 (932)
T KOG2053|consen  472 NFQTKLLLIRIYSYLGAFPDAYELYKTLDIK-NIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIA  549 (932)
T ss_pred             cHHHHHHHHHHHHHhcCChhHHHHHHhcchH-HhhhccchHH-HHHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHH
Confidence            4455566777787778888888888877654 5555554443 334455566777766666554 1110  011112222


Q ss_pred             HHHHHcCChHHHHHHHHHHHhcCCCC----CccHHHHHHHHHhcCChHHHHHHHHHHH
Q 037816          535 GACSIHGDSEMGKYAAEKLFLAQPDS----PAPYILMANIYSCSGRWKERAKAIKRMK  588 (648)
Q Consensus       535 ~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~  588 (648)
                      . ..+.|.+.+-.++..--.++.-..    ..+=+.....+...++.++-...+..|.
T Consensus       550 ~-AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~  606 (932)
T KOG2053|consen  550 L-AYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK  606 (932)
T ss_pred             H-HHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence            2 335666665554433322332221    1233445566667778777777777665

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.63  E-value=0.00073  Score=66.78  Aligned_cols=132  Identities=9%  Similarity=0.076  Sum_probs=88.1

Q ss_pred             CChHHHHHHHHHHHhcCCChhHHHHhhccCCCC---CcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHH
Q 037816           86 PNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMR---DTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII  162 (648)
Q Consensus        86 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~l  162 (648)
                      |-|+.+|+.||+-+... .++++.+.++.+..+   ....|..-|..-.+..+++....+|.+.+..-+..|--.+|..-
T Consensus        17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~Y   95 (656)
T KOG1914|consen   17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLSY   95 (656)
T ss_pred             CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHH
Confidence            67899999999988766 999999999999843   56778899999999999999999999988765443333344443


Q ss_pred             HHHhhccCCh--HHHHHHHH-HHHHhCCCCC-hhHHHHHHHHh---------HhcCChhHHHHHhcccC
Q 037816          163 LSACDRSELS--LVSKMIHC-LVYLCGYEEE-VTVGNALITSY---------FKCGSSSSGRKVFGEMR  218 (648)
Q Consensus       163 l~~~~~~~~~--~~a~~~~~-~~~~~~~~~~-~~~~~~li~~~---------~~~g~~~~A~~~~~~~~  218 (648)
                      ++--...+.-  +...+.++ .+.+.|..+- ...|+..+..+         ..+.+++...++++++.
T Consensus        96 VR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral  164 (656)
T KOG1914|consen   96 VRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRAL  164 (656)
T ss_pred             HHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHh
Confidence            3332222222  22222333 3344564433 34565555443         34456777888888876

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.62  E-value=4.7e-06  Score=90.21  Aligned_cols=203  Identities=15%  Similarity=0.141  Sum_probs=167.8

Q ss_pred             CCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCC--------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH
Q 037816          390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR--------NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT  461 (648)
Q Consensus       390 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~  461 (648)
                      |.+...|-..|......++.++|+++.++..+.        -...|-++++.-..-|.-+...++|+++.+..  -....
T Consensus      1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTV 1532 (1710)
T ss_pred             CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHH
Confidence            455667778888888899999999998887632        24578888877777788889999999998742  23456


Q ss_pred             HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHH
Q 037816          462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPD---VLVWQALLGAC  537 (648)
Q Consensus       462 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~  537 (648)
                      |..|...|.+.+.+++|.++++.|.++++  -....|...++.+.+..+-+.|.+++.++ ..-|-   .....-.+..-
T Consensus      1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence            88899999999999999999999999655  77888999999999999999999999887 33343   34444455556


Q ss_pred             HHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCC
Q 037816          538 SIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKET  596 (648)
Q Consensus       538 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~  596 (648)
                      .+.||.+++..+|+..+...|.....|..+++.-.+.|+.+.++.+|++....++.+..
T Consensus      1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred             hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH
Confidence            78999999999999999999999999999999999999999999999999998886653

>PF12854 PPR_1: PPR repeat

Probab=98.60  E-value=5.2e-08  Score=58.69  Aligned_cols=33  Identities=30%  Similarity=0.532  Sum_probs=29.5

Q ss_pred             CCCChHHHHHHHHHHHhcCCChhHHHHhhccCC
Q 037816           84 NVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMP  116 (648)
Q Consensus        84 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~  116 (648)
                      |++||..+||.||++|++.|++++|.++|++|+
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            459999999999999999999999999999885

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.55  E-value=2.6e-06  Score=72.44  Aligned_cols=108  Identities=6%  Similarity=-0.138  Sum_probs=68.6

Q ss_pred             HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 037816          462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSI  539 (648)
Q Consensus       462 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~  539 (648)
                      +..+...+...|++++|...|+.+..  --+.+...+..+..++.+.|++++|...|++. ...| +...+..+..++..
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~  104 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM  104 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence            33445556666777777777777654  22336666666666677777777777777666 3333 45566666666667


Q ss_pred             cCChHHHHHHHHHHHhcCCCCCccHHHHHHHH
Q 037816          540 HGDSEMGKYAAEKLFLAQPDSPAPYILMANIY  571 (648)
Q Consensus       540 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  571 (648)
                      .|++++|+..++++++..|+++..+...+.+.
T Consensus       105 ~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~  136 (144)
T PRK15359        105 MGEPGLAREAFQTAIKMSYADASWSEIRQNAQ  136 (144)
T ss_pred             cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            77777777777777777777766665555544

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.53  E-value=1.5e-06  Score=73.79  Aligned_cols=107  Identities=13%  Similarity=0.082  Sum_probs=92.1

Q ss_pred             HHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 037816          480 EFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQ  557 (648)
Q Consensus       480 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  557 (648)
                      .++++..+   +.|+  .+..+...+...|++++|...|+.. ...| +...|..+..++...|++++|+..|+++++.+
T Consensus        14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~   88 (144)
T PRK15359         14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD   88 (144)
T ss_pred             HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            44555543   3444  3556788899999999999999998 5555 57788999999999999999999999999999


Q ss_pred             CCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037816          558 PDSPAPYILMANIYSCSGRWKERAKAIKRMKEMG  591 (648)
Q Consensus       558 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  591 (648)
                      |.++.++..++.++...|++++|+..+++..+..
T Consensus        89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~  122 (144)
T PRK15359         89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS  122 (144)
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999998743

>PF12854 PPR_1: PPR repeat

Probab=98.50  E-value=1.4e-07  Score=56.81  Aligned_cols=33  Identities=36%  Similarity=0.595  Sum_probs=27.5

Q ss_pred             CCCCChhHHHHHHHHhHhcCChhHHHHHhcccC
Q 037816          186 GYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR  218 (648)
Q Consensus       186 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~  218 (648)
                      |+.||..+|++||++|++.|++++|.++|++|+
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            678888888888888888888888888888774

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.50  E-value=1.6e-05  Score=80.97  Aligned_cols=212  Identities=11%  Similarity=-0.012  Sum_probs=140.1

Q ss_pred             HHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC--CCChhHHHHHHHHHHHcCC
Q 037816          362 SAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA--PRNSVSWNSMIAAFARHGN  439 (648)
Q Consensus       362 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~  439 (648)
                      ..+...+...|-...|..+++++.         .+.-++.+|+..|+..+|..+..+..  +|+...|..+.......--
T Consensus       402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~  472 (777)
T KOG1128|consen  402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSL  472 (777)
T ss_pred             HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHH
Confidence            334444455555555555554432         33445556666666666655554332  3455555555555444444


Q ss_pred             hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHH
Q 037816          440 GFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIE  519 (648)
Q Consensus       440 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  519 (648)
                      +++|.++.+..-.+       .-..+.....+.++++++.+.|+.-.+.  .+....+|-.+..+..+.++++.|.+.|.
T Consensus       473 yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~--nplq~~~wf~~G~~ALqlek~q~av~aF~  543 (777)
T KOG1128|consen  473 YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI--NPLQLGTWFGLGCAALQLEKEQAAVKAFH  543 (777)
T ss_pred             HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc--CccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence            55555555443221       1111112223356677777777666542  22366777777888888999999999988


Q ss_pred             hC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037816          520 RM-PVKPD-VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMG  591 (648)
Q Consensus       520 ~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  591 (648)
                      .. ...|| ...|+.+-.+|.+.++-.+|...++++++-+-.+..++....-...+.|.+++|.+.++++.+..
T Consensus       544 rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~  617 (777)
T KOG1128|consen  544 RCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR  617 (777)
T ss_pred             HHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence            87 66776 66799999999999999999999999999888888899888888999999999999999987654

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.50  E-value=1.1e-05  Score=86.11  Aligned_cols=141  Identities=11%  Similarity=0.041  Sum_probs=106.6

Q ss_pred             ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 037816          423 NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD-VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV  501 (648)
Q Consensus       423 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l  501 (648)
                      ++..+-.|.....+.|++++|..+|+...+  +.|+. .....+...+.+.+++++|+..+++...  .-+-+......+
T Consensus        85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~  160 (694)
T PRK15179         85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE  160 (694)
T ss_pred             cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence            567777788888888888888888888887  45754 4566677788888888888888888876  233367777778


Q ss_pred             HHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHH
Q 037816          502 VDMVGRAGLLIEARSFIERM-PVKPD-VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILM  567 (648)
Q Consensus       502 ~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l  567 (648)
                      ..++...|++++|.++|++. ...|+ ...+..+..++...|+.++|...|+++++...+....|+.+
T Consensus       161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~  228 (694)
T PRK15179        161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRR  228 (694)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHH
Confidence            88888888888888888887 23333 67778888888888888888888888887765554444433

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.50  E-value=8.7e-06  Score=80.61  Aligned_cols=247  Identities=14%  Similarity=0.039  Sum_probs=172.3

Q ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHH
Q 037816          332 GFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLED  411 (648)
Q Consensus       332 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  411 (648)
                      -+.+.|+..+|.-.|+..+... +-+...|..|-......++-..|+..+.+..+.. +.+..+.-.|.-.|...|.-..
T Consensus       294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~  371 (579)
T KOG1125|consen  294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ  371 (579)
T ss_pred             HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence            3566777777777777776654 3455666666666777777777777777777665 5566677777777877777777


Q ss_pred             HHHHHhhcCCC-ChhHHHHHH---------HHHHHcCChHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 037816          412 SIKVFSRMAPR-NSVSWNSMI---------AAFARHGNGFKALELYEEMK-LEGVEPTDVTFLSLLHACSHVGLVNKGME  480 (648)
Q Consensus       412 A~~~~~~~~~~-~~~~~~~l~---------~~~~~~~~~~~A~~~~~~m~-~~~~~p~~~~~~~ll~~~~~~g~~~~A~~  480 (648)
                      |.+.++.-... ....|....         ..+..........++|-++. ..+..+|+.....|.-.|.-.|++++|..
T Consensus       372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD  451 (579)
T KOG1125|consen  372 ALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD  451 (579)
T ss_pred             HHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence            77777654210 000000000         11111222334445554444 45545777778888888899999999999


Q ss_pred             HHHHhHHhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 037816          481 FLKSMTEVHRISP-RAEHYACVVDMVGRAGLLIEARSFIERM-PVKPD-VLVWQALLGACSIHGDSEMGKYAAEKLFLAQ  557 (648)
Q Consensus       481 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  557 (648)
                      .|+.+..   ++| |..+||.|.-.++...+.++|++.|++. .++|. +.....|.-+|...|.+++|..+|-.++.+.
T Consensus       452 cf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq  528 (579)
T KOG1125|consen  452 CFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ  528 (579)
T ss_pred             HHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence            9999976   466 8889999999999999999999999998 88887 5566778888999999999999999998765


Q ss_pred             CC-----C-----CccHHHHHHHHHhcCChHHHHHH
Q 037816          558 PD-----S-----PAPYILMANIYSCSGRWKERAKA  583 (648)
Q Consensus       558 p~-----~-----~~~~~~l~~~~~~~g~~~~A~~~  583 (648)
                      +.     +     ..+|..|=.++.-+++.+-+.++
T Consensus       529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a  564 (579)
T KOG1125|consen  529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA  564 (579)
T ss_pred             hcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence            44     1     13666666667777776655443

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.49  E-value=1.2e-05  Score=67.00  Aligned_cols=120  Identities=13%  Similarity=0.064  Sum_probs=100.4

Q ss_pred             ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHH
Q 037816          494 RAEHYACVVDMVGRAGLLIEARSFIERM-PVKPD-VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIY  571 (648)
Q Consensus       494 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  571 (648)
                      +....-.+...+...|++++|.++|+-. .+.|. ..-|-.|..++...|++++|+..|.++..++|+++.++..++.++
T Consensus        34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~  113 (157)
T PRK15363         34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY  113 (157)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence            3444555667778899999999999988 55664 666888888899999999999999999999999999999999999


Q ss_pred             HhcCChHHHHHHHHHHHhCCCCCCCceeEEEEcCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHh
Q 037816          572 SCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMID  636 (648)
Q Consensus       572 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~  636 (648)
                      ...|+.+.|.+.|+......                       ..+|....+.++.+..++.+.+
T Consensus       114 L~lG~~~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l~~  155 (157)
T PRK15363        114 LACDNVCYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQLSD  155 (157)
T ss_pred             HHcCCHHHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHhhc
Confidence            99999999999999986642                       2457788888888777776654

>PLN02789 farnesyltranstransferase

Probab=98.48  E-value=7.4e-05  Score=72.35  Aligned_cols=211  Identities=11%  Similarity=0.044  Sum_probs=127.0

Q ss_pred             ChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC-CHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCCh--HHHHHH
Q 037816          373 SLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCG-DLEDSIKVFSRMAP---RNSVSWNSMIAAFARHGNG--FKALEL  446 (648)
Q Consensus       373 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~--~~A~~~  446 (648)
                      ..++|..+...+++.. +-+..+|+....++...| ++++++..++++..   .+..+|+.....+.+.|+.  ++++.+
T Consensus        52 ~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~  130 (320)
T PLN02789         52 RSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEF  130 (320)
T ss_pred             CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHH
Confidence            4444444444444432 223334443334444445 45666666666542   3444555444444445542  566777


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhc---CCH----HHHHHHHH
Q 037816          447 YEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA---GLL----IEARSFIE  519 (648)
Q Consensus       447 ~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~A~~~~~  519 (648)
                      ++++.+.. +-|..+|.....++...|+++++++.++++.+.  -.-+...|+.....+.+.   |..    ++++++..
T Consensus       131 ~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~  207 (320)
T PLN02789        131 TRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTI  207 (320)
T ss_pred             HHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHHH
Confidence            77777644 235667777777777777788888888888763  233555666555554443   222    35556654


Q ss_pred             hC-CCCC-CHHHHHHHHHHHHHc----CChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcC------------------
Q 037816          520 RM-PVKP-DVLVWQALLGACSIH----GDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSG------------------  575 (648)
Q Consensus       520 ~~-~~~p-~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------  575 (648)
                      ++ ...| |...|+.+...+...    +...+|...+.++...+|.+..+...++++|+...                  
T Consensus       208 ~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~  287 (320)
T PLN02789        208 DAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELS  287 (320)
T ss_pred             HHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccc
Confidence            44 4445 456677777777662    44566888888888888888888889999888642                  


Q ss_pred             ChHHHHHHHHHH
Q 037816          576 RWKERAKAIKRM  587 (648)
Q Consensus       576 ~~~~A~~~~~~m  587 (648)
                      ..++|.++++.+
T Consensus       288 ~~~~a~~~~~~l  299 (320)
T PLN02789        288 DSTLAQAVCSEL  299 (320)
T ss_pred             cHHHHHHHHHHH
Confidence            346788888877

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.48  E-value=1.8e-05  Score=71.16  Aligned_cols=154  Identities=12%  Similarity=0.102  Sum_probs=118.7

Q ss_pred             HHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHH
Q 037816          400 INMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGM  479 (648)
Q Consensus       400 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~  479 (648)
                      +..|...|+++.+....+.+..+.        ..+...++.+++...+++..+.+ +.|...|..+...|...|++++|.
T Consensus        23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~   93 (198)
T PRK10370         23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL   93 (198)
T ss_pred             HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence            456778888877765554333221        01223567788888888888765 457888999999999999999999


Q ss_pred             HHHHHhHHhcCCCCChhHHHHHHHHh-hhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 037816          480 EFLKSMTEVHRISPRAEHYACVVDMV-GRAGL--LIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLF  554 (648)
Q Consensus       480 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  554 (648)
                      ..|++..+.  .+.+...+..+..++ ...|+  .++|.+++++. ...| +...+..+...+.+.|++++|+..+++++
T Consensus        94 ~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL  171 (198)
T PRK10370         94 LAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL  171 (198)
T ss_pred             HHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            999999873  334788888888864 67777  59999999998 5555 57778888889999999999999999999


Q ss_pred             hcCCCCCccH
Q 037816          555 LAQPDSPAPY  564 (648)
Q Consensus       555 ~~~p~~~~~~  564 (648)
                      +..|++..-+
T Consensus       172 ~l~~~~~~r~  181 (198)
T PRK10370        172 DLNSPRVNRT  181 (198)
T ss_pred             hhCCCCccHH
Confidence            9998876444

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.48  E-value=1.4e-05  Score=71.55  Aligned_cols=154  Identities=12%  Similarity=0.113  Sum_probs=84.4

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhh
Q 037816          428 NSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR  507 (648)
Q Consensus       428 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  507 (648)
                      ..+-..+...|+-+....+..+..... .-|.......+....+.|++..|...+.+...  .-++|...|+.+.-+|.+
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq  146 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ  146 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence            334444555555555555555543211 12333444455555666666666666666654  344566666666666666


Q ss_pred             cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHH
Q 037816          508 AGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAI  584 (648)
Q Consensus       508 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  584 (648)
                      .|++++|..-|.+. .+.| ++..++.+...+.-.|+.+.|..++..+....+.+..+-..++.+....|++++|..+.
T Consensus       147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~  225 (257)
T COG5010         147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA  225 (257)
T ss_pred             ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence            66666666555554 3333 24445555555556666666666666665555555566666666666666666665543

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.44  E-value=2.6e-05  Score=69.84  Aligned_cols=127  Identities=16%  Similarity=0.077  Sum_probs=71.7

Q ss_pred             HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHc
Q 037816          463 LSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM--PVKPDVLVWQALLGACSIH  540 (648)
Q Consensus       463 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~  540 (648)
                      ..+-..+...|+-+....+......  ..+.+......++....+.|++.+|...+++.  .-.+|...|+.+.-+|.+.
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~  147 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQL  147 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHc
Confidence            3344445555555555555555432  22334445555566666666666666666655  3334555566666666666


Q ss_pred             CChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037816          541 GDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMG  591 (648)
Q Consensus       541 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  591 (648)
                      |+++.|...|.+++++.|.++.+++.++..|.-.|+++.|..++......+
T Consensus       148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~  198 (257)
T COG5010         148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP  198 (257)
T ss_pred             cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence            666666666666666666666666666666666666666666665555443

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.40  E-value=1.2e-05  Score=81.77  Aligned_cols=192  Identities=15%  Similarity=0.175  Sum_probs=163.5

Q ss_pred             hCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037816          387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL  466 (648)
Q Consensus       387 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll  466 (648)
                      .+.+|-...-..+...+...|-...|..+|+++.     .|...+.+|+..|+..+|..+..+..+  -+||+..|..+.
T Consensus       392 ~~lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LG  464 (777)
T KOG1128|consen  392 PHLPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLG  464 (777)
T ss_pred             CCCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhh
Confidence            3567777788888999999999999999999764     677889999999999999999988887  368999999999


Q ss_pred             HHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChH
Q 037816          467 HACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSE  544 (648)
Q Consensus       467 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~  544 (648)
                      +......-+++|.++.+....+        .-..+.....+.++++++.+.|+.- .+.| ...+|-.+..+..+.++++
T Consensus       465 Dv~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q  536 (777)
T KOG1128|consen  465 DVLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQ  536 (777)
T ss_pred             hhccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhH
Confidence            9888888899999998877542        2222333344579999999999875 5444 5788999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 037816          545 MGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVD  593 (648)
Q Consensus       545 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~  593 (648)
                      .|.+.|-....+.|++...|+.+..+|.+.|+-.+|...+++..+-...
T Consensus       537 ~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~  585 (777)
T KOG1128|consen  537 AAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ  585 (777)
T ss_pred             HHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC
Confidence            9999999999999999999999999999999999999999999987743

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.37  E-value=0.00015  Score=70.93  Aligned_cols=139  Identities=17%  Similarity=0.128  Sum_probs=99.5

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHhhhc
Q 037816          431 IAAFARHGNGFKALELYEEMKLEGVEPT-DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR-AEHYACVVDMVGRA  508 (648)
Q Consensus       431 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~  508 (648)
                      ...+...|++++|+..++.+...  .|+ +.-.......+...++.++|.+.++++...   .|+ ....-.+.++|.+.
T Consensus       313 A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~all~~  387 (484)
T COG4783         313 ALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQALLKG  387 (484)
T ss_pred             HHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHHHhc
Confidence            33445678888888888887774  354 444445556778888888888888888753   454 55666777888888


Q ss_pred             CCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHH
Q 037816          509 GLLIEARSFIERM--PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKR  586 (648)
Q Consensus       509 g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  586 (648)
                      |++.+|+.++++.  ..+-|+..|..|..+|...|+..++....                 +..|...|++++|+..+..
T Consensus       388 g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~~~l~~  450 (484)
T COG4783         388 GKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAIIFLMR  450 (484)
T ss_pred             CChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHHHHHHH
Confidence            8888888888877  44446777888888888888877665543                 3457777888888888887


Q ss_pred             HHhCC
Q 037816          587 MKEMG  591 (648)
Q Consensus       587 m~~~~  591 (648)
                      ..+..
T Consensus       451 A~~~~  455 (484)
T COG4783         451 ASQQV  455 (484)
T ss_pred             HHHhc
Confidence            77653

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.36  E-value=0.00013  Score=64.90  Aligned_cols=170  Identities=14%  Similarity=0.130  Sum_probs=122.6

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 037816          395 VNNGLINMYSKCGDLEDSIKVFSRMAP--R-NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSH  471 (648)
Q Consensus       395 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~  471 (648)
                      +|..++-+....|+.+.|...++.+..  | +...-..-...+-..|++++|+++++.+.+.+ +.|..++..=+...-.
T Consensus        54 l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka  132 (289)
T KOG3060|consen   54 LYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA  132 (289)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence            344555566677888888887777653  2 11111111223445789999999999999876 4466677666666666


Q ss_pred             cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc---CChHHH
Q 037816          472 VGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIH---GDSEMG  546 (648)
Q Consensus       472 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~~~A  546 (648)
                      .|+.-+|++-+.+..+  .+..|...|.-+.+.|...|++++|.-.++++ -+.| ++..+..+...+.-.   .+.+.|
T Consensus       133 ~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a  210 (289)
T KOG3060|consen  133 QGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA  210 (289)
T ss_pred             cCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence            7777789988888887  47789999999999999999999999999998 4455 455566666665443   478889


Q ss_pred             HHHHHHHHhcCCCCCccHHHH
Q 037816          547 KYAAEKLFLAQPDSPAPYILM  567 (648)
Q Consensus       547 ~~~~~~~~~~~p~~~~~~~~l  567 (648)
                      ..+|.++++++|.+...+..+
T Consensus       211 rkyy~~alkl~~~~~ral~GI  231 (289)
T KOG3060|consen  211 RKYYERALKLNPKNLRALFGI  231 (289)
T ss_pred             HHHHHHHHHhChHhHHHHHHH
Confidence            999999999999665544433

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.36  E-value=0.00029  Score=63.22  Aligned_cols=249  Identities=15%  Similarity=0.085  Sum_probs=147.1

Q ss_pred             HHhcCCHHHHHHHHHhccC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHH-H
Q 037816          302 YSKCGSVEDAWQIFEFAEE--LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLG-K  378 (648)
Q Consensus       302 ~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a-~  378 (648)
                      +.-.|++..++..-.....  .++..-..+-++|...|.+.....-   +.. |-.|....+..+.......++.+.- .
T Consensus        18 ~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~e---I~~-~~~~~lqAvr~~a~~~~~e~~~~~~~~   93 (299)
T KOG3081|consen   18 YFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISE---IKE-GKATPLQAVRLLAEYLELESNKKSILA   93 (299)
T ss_pred             HHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHcccccccccc---ccc-ccCChHHHHHHHHHHhhCcchhHHHHH
Confidence            3344555555544433322  2222233345566666655433221   111 1133334444444434334443332 3


Q ss_pred             HHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 037816          379 QIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT  458 (648)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~  458 (648)
                      ++.+.+.......+......-...|+..|++++|++......  +......=+..+.+..+.+-|...+++|.+-   -+
T Consensus        94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---de  168 (299)
T KOG3081|consen   94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DE  168 (299)
T ss_pred             HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---ch
Confidence            344444444444443444444556788888888888887733  3333333355666778888888888888862   35


Q ss_pred             HHHHHHHHHHHh----ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHH
Q 037816          459 DVTFLSLLHACS----HVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM--PVKPDVLVWQA  532 (648)
Q Consensus       459 ~~~~~~ll~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~  532 (648)
                      ..|.+.|..++.    ..+.+..|.-+|+++.+  ..+|++.+.+....++...|++++|..++++.  +...++.+...
T Consensus       169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~N  246 (299)
T KOG3081|consen  169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLAN  246 (299)
T ss_pred             HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHH
Confidence            566666666653    34567888888888876  47788888888888888888888888888877  44446666666


Q ss_pred             HHHHHHHcCCh-HHHHHHHHHHHhcCCCCC
Q 037816          533 LLGACSIHGDS-EMGKYAAEKLFLAQPDSP  561 (648)
Q Consensus       533 l~~~~~~~g~~-~~A~~~~~~~~~~~p~~~  561 (648)
                      ++.+-...|.. +.-.+.+.++....|..+
T Consensus       247 liv~a~~~Gkd~~~~~r~l~QLk~~~p~h~  276 (299)
T KOG3081|consen  247 LIVLALHLGKDAEVTERNLSQLKLSHPEHP  276 (299)
T ss_pred             HHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence            66655555544 444457777777777654

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.34  E-value=4.4e-05  Score=71.65  Aligned_cols=182  Identities=13%  Similarity=0.037  Sum_probs=127.2

Q ss_pred             CcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhCCCHHHHHHHHhhcCC--C-Chh---
Q 037816          355 EIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN---PFVNNGLINMYSKCGDLEDSIKVFSRMAP--R-NSV---  425 (648)
Q Consensus       355 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~---  425 (648)
                      ......+......+...|+++.|...++.+.... +.+   ...+..+..++...|++++|...++++.+  | +..   
T Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  108 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY  108 (235)
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence            3456677788888999999999999999988764 222   24667788999999999999999998863  2 222   


Q ss_pred             HHHHHHHHHHHc--------CChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChh
Q 037816          426 SWNSMIAAFARH--------GNGFKALELYEEMKLEGVEPTDV-TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAE  496 (648)
Q Consensus       426 ~~~~l~~~~~~~--------~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  496 (648)
                      ++..+..++...        |++++|.+.++++.+..  |+.. ....+.....    ...      ...         .
T Consensus       109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~------~~~---------~  167 (235)
T TIGR03302       109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRN------RLA---------G  167 (235)
T ss_pred             HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHH------HHH---------H
Confidence            455555566554        78899999999998854  5432 2222211100    000      000         0


Q ss_pred             HHHHHHHHhhhcCCHHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 037816          497 HYACVVDMVGRAGLLIEARSFIERM-PV---KP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQP  558 (648)
Q Consensus       497 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p  558 (648)
                      ....+...|.+.|++++|...+++. ..   .| ....+..+..++...|++++|..+++.+....|
T Consensus       168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~  234 (235)
T TIGR03302       168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP  234 (235)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            1124566788999999999988887 22   23 356788888999999999999998888876655

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.32  E-value=0.00014  Score=78.50  Aligned_cols=44  Identities=11%  Similarity=0.112  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHH
Q 037816          529 VWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYS  572 (648)
Q Consensus       529 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  572 (648)
                      ++-.+-..|...+++++++.+++.+++.+|.|..+...++.+|.
T Consensus       225 ~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~  268 (906)
T PRK14720        225 LLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK  268 (906)
T ss_pred             HHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence            33344455556666777777777777777776666666666655

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.31  E-value=1.1e-05  Score=68.31  Aligned_cols=97  Identities=21%  Similarity=0.265  Sum_probs=67.0

Q ss_pred             ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHH
Q 037816          494 RAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIY  571 (648)
Q Consensus       494 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  571 (648)
                      +......+...+...|++++|.+.++.. ...| +...|..+..++...|++++|...++++++..|.++..+..++.+|
T Consensus        16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~   95 (135)
T TIGR02552        16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL   95 (135)
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            3344555666666677777777777665 3233 4566666667777777777777777777777777777777777777


Q ss_pred             HhcCChHHHHHHHHHHHhC
Q 037816          572 SCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       572 ~~~g~~~~A~~~~~~m~~~  590 (648)
                      ...|++++|...+++..+.
T Consensus        96 ~~~g~~~~A~~~~~~al~~  114 (135)
T TIGR02552        96 LALGEPESALKALDLAIEI  114 (135)
T ss_pred             HHcCCHHHHHHHHHHHHHh
Confidence            7777777777777777664

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PLN02789 farnesyltranstransferase

Probab=98.29  E-value=0.00066  Score=65.82  Aligned_cols=222  Identities=11%  Similarity=0.061  Sum_probs=140.2

Q ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCcCHH-HHHHHHHHHhccC-ChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCH
Q 037816          332 GFAQNGFEEEAMQLFVKMVKAGIEIDPN-MVSAVLGVFGVDT-SLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDL  409 (648)
Q Consensus       332 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  409 (648)
                      .+...++.++|+.+..++++..  |+.. .|..--.++...| +++++...++.+.+.. +.+..+|+...-.+.+.|+.
T Consensus        46 ~l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~  122 (320)
T PLN02789         46 VYASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPD  122 (320)
T ss_pred             HHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCch
Confidence            3445667777888877777643  4332 3333333444445 4677777777777665 44445565544445555542


Q ss_pred             --HHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc---Cc----HHH
Q 037816          410 --EDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHV---GL----VNK  477 (648)
Q Consensus       410 --~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---g~----~~~  477 (648)
                        +++..+++.+.   +.|..+|+...-++...|+++++++.++++++.+ .-|...|+.....+.+.   |.    .+.
T Consensus       123 ~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~  201 (320)
T PLN02789        123 AANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDS  201 (320)
T ss_pred             hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHH
Confidence              56677776665   4577788888888888899999999999999876 23555665555444443   22    245


Q ss_pred             HHHHHHHhHHhcCCCCChhHHHHHHHHhhhc----CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC----------
Q 037816          478 GMEFLKSMTEVHRISPRAEHYACVVDMVGRA----GLLIEARSFIERM-PVKP-DVLVWQALLGACSIHG----------  541 (648)
Q Consensus       478 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g----------  541 (648)
                      ...+..++...  .+-|...|+.+...+...    ++..+|.+++.+. ...| +......|+..|+...          
T Consensus       202 el~y~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~  279 (320)
T PLN02789        202 ELKYTIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTV  279 (320)
T ss_pred             HHHHHHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhh
Confidence            67777666652  344788888888888773    3456688887776 4344 4666777888877532          


Q ss_pred             --------ChHHHHHHHHHHHhcCCC
Q 037816          542 --------DSEMGKYAAEKLFLAQPD  559 (648)
Q Consensus       542 --------~~~~A~~~~~~~~~~~p~  559 (648)
                              ..++|..+++.+.+.+|-
T Consensus       280 ~~~~~~~~~~~~a~~~~~~l~~~d~i  305 (320)
T PLN02789        280 DTLAEELSDSTLAQAVCSELEVADPM  305 (320)
T ss_pred             hccccccccHHHHHHHHHHHHhhCcH
Confidence                    235566666666444443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.28  E-value=0.00019  Score=76.86  Aligned_cols=142  Identities=10%  Similarity=0.088  Sum_probs=116.4

Q ss_pred             CCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC--CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHH
Q 037816          388 DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA--PR-NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT-DVTFL  463 (648)
Q Consensus       388 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~  463 (648)
                      ..+.++..+..|.....+.|.+++|+.+++...  .| +......+...+.+.+++++|+..+++.....  |+ .....
T Consensus        81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--p~~~~~~~  158 (694)
T PRK15179         81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG--SSSAREIL  158 (694)
T ss_pred             hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC--CCCHHHHH
Confidence            456678889999999999999999999999876  34 56677788899999999999999999999864  64 55666


Q ss_pred             HHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHH
Q 037816          464 SLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM--PVKPDVLVWQAL  533 (648)
Q Consensus       464 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l  533 (648)
                      .+..++.+.|++++|..+|+++..  ..+-+..++..+...+.+.|+.++|...|++.  ...|-...|+.+
T Consensus       159 ~~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~  228 (694)
T PRK15179        159 LEAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRR  228 (694)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHH
Confidence            777888999999999999999987  33446888999999999999999999999988  334444444444

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.26  E-value=0.00019  Score=78.32  Aligned_cols=226  Identities=14%  Similarity=0.120  Sum_probs=171.3

Q ss_pred             CcCHHHHHHHHHHHhccCChhHHHHHHHHHHHh-CCCC---chhHHHHHHHHHHhCCCHHHHHHHHhhcCCC--ChhHHH
Q 037816          355 EIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS-DFTS---NPFVNNGLINMYSKCGDLEDSIKVFSRMAPR--NSVSWN  428 (648)
Q Consensus       355 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~  428 (648)
                      +-+...|-..|......++.+.|+++.+++... ++.-   -..+|.++++.-..-|.-+...++|+++.+-  ....|.
T Consensus      1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred             CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence            344566777777788888888888888877643 2211   2346777777777778888889999988753  356788


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHhh
Q 037816          429 SMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP--RAEHYACVVDMVG  506 (648)
Q Consensus       429 ~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~  506 (648)
                      .|...|.+.+.+++|.++++.|.+. +.-....|...+..+.+.++-+.|..++.++.+.  ++-  ........++.-.
T Consensus      1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred             HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHh
Confidence            8999999999999999999999975 3456778889999999999999999999999873  333  5666777888888


Q ss_pred             hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCCCccHHHHHHHHHhc-CChHHHH
Q 037816          507 RAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQ--PDSPAPYILMANIYSCS-GRWKERA  581 (648)
Q Consensus       507 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~-g~~~~A~  581 (648)
                      +.|+.+++..+|+.. .-.| -...|+.++..-.++|+.+.+..+|++++.+.  |.....+.-.---|.+. |+-+.+.
T Consensus      1612 k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred             hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence            999999999999887 2223 46679999999999999999999999998765  55655555444445544 5544444


Q ss_pred             HH
Q 037816          582 KA  583 (648)
Q Consensus       582 ~~  583 (648)
                      .+
T Consensus      1692 ~V 1693 (1710)
T KOG1070|consen 1692 YV 1693 (1710)
T ss_pred             HH
Confidence            33

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.25  E-value=0.00012  Score=71.42  Aligned_cols=122  Identities=16%  Similarity=0.181  Sum_probs=109.0

Q ss_pred             HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHH
Q 037816          468 ACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPD-VLVWQALLGACSIHGDSEM  545 (648)
Q Consensus       468 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~  545 (648)
                      .+...|.++.|+..++.+..  ..+-|+.......+.+.+.++..+|.+.++++ ...|+ ...+-.+..++.+.|+..+
T Consensus       315 ~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e  392 (484)
T COG4783         315 QTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE  392 (484)
T ss_pred             HHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence            35677899999999999987  45568888888999999999999999999998 66777 6667788899999999999


Q ss_pred             HHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037816          546 GKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMG  591 (648)
Q Consensus       546 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  591 (648)
                      |+.+++.....+|+++..|..++.+|...|+..+|....-+.....
T Consensus       393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~  438 (484)
T COG4783         393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALA  438 (484)
T ss_pred             HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999988876543

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.25  E-value=0.00026  Score=63.56  Aligned_cols=244  Identities=10%  Similarity=0.033  Sum_probs=156.9

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCH
Q 037816          330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDL  409 (648)
Q Consensus       330 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  409 (648)
                      ++-+.-.|++..++..-......  +.+...-..+-++|...|+.....   ..+.... .|.......+......-++.
T Consensus        15 iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~---~eI~~~~-~~~lqAvr~~a~~~~~e~~~   88 (299)
T KOG3081|consen   15 IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVI---SEIKEGK-ATPLQAVRLLAEYLELESNK   88 (299)
T ss_pred             HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccc---ccccccc-CChHHHHHHHHHHhhCcchh
Confidence            34455667777777665554332  233344444555665555543221   1122111 33333333333333333443


Q ss_pred             HHHH-HHHhhcCCC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 037816          410 EDSI-KVFSRMAPR----NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKS  484 (648)
Q Consensus       410 ~~A~-~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~  484 (648)
                      ++-. ++.+.+..+    +......-...|++.|++++|++.++...      +......=+..+.+..+.+-|.+.+++
T Consensus        89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~  162 (299)
T KOG3081|consen   89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK  162 (299)
T ss_pred             HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3332 223333322    22233333456889999999999887722      222222334456778899999999999


Q ss_pred             hHHhcCCCCChhHHHHHHHHhh----hcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 037816          485 MTEVHRISPRAEHYACVVDMVG----RAGLLIEARSFIERM--PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQP  558 (648)
Q Consensus       485 ~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p  558 (648)
                      |.+-    .+..+.+.|..++.    -.+...+|.-+|+++  +..|++.+.+-...++...|++++|..+++.++..++
T Consensus       163 mq~i----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~  238 (299)
T KOG3081|consen  163 MQQI----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA  238 (299)
T ss_pred             HHcc----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence            9762    45566666666654    346799999999999  5789999999999999999999999999999999999


Q ss_pred             CCCccHHHHHHHHHhcCChHHHH-HHHHHHHh
Q 037816          559 DSPAPYILMANIYSCSGRWKERA-KAIKRMKE  589 (648)
Q Consensus       559 ~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~  589 (648)
                      +++.+...++.+-...|+-.++. +.+..++.
T Consensus       239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~  270 (299)
T KOG3081|consen  239 KDPETLANLIVLALHLGKDAEVTERNLSQLKL  270 (299)
T ss_pred             CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence            99999999999888888876654 45555544

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.22  E-value=0.0004  Score=75.23  Aligned_cols=240  Identities=14%  Similarity=0.088  Sum_probs=130.4

Q ss_pred             CCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccCCCCcccHHHHH
Q 037816          150 GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVI  229 (648)
Q Consensus       150 ~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li  229 (648)
                      +..|+....+..|+..+...++++++.++.+...+.. +.....|-.+...+...++.+.+..+             .++
T Consensus        25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l   90 (906)
T PRK14720         25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-------------NLI   90 (906)
T ss_pred             cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-------------hhh
Confidence            3444444455555555555555555555555333322 11222222222244444544443322             233


Q ss_pred             HHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHH
Q 037816          230 SGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVE  309 (648)
Q Consensus       230 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  309 (648)
                      ..+....++.-+..+...|...  .-+...+..+..+|.+.|+.+++..+|+++++.. +.|+.+.|.+...|... +++
T Consensus        91 ~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~  166 (906)
T PRK14720         91 DSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE  166 (906)
T ss_pred             hhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence            3333444443333344444332  2333456667777777777777777777777776 66677778888888887 888


Q ss_pred             HHHHHHHhccCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHh-C
Q 037816          310 DAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS-D  388 (648)
Q Consensus       310 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~  388 (648)
                      +|.+++.+..           ..+...+++.++.+++.++.... +.+...+..++                +.+... |
T Consensus       167 KA~~m~~KAV-----------~~~i~~kq~~~~~e~W~k~~~~~-~~d~d~f~~i~----------------~ki~~~~~  218 (906)
T PRK14720        167 KAITYLKKAI-----------YRFIKKKQYVGIEEIWSKLVHYN-SDDFDFFLRIE----------------RKVLGHRE  218 (906)
T ss_pred             HHHHHHHHHH-----------HHHHhhhcchHHHHHHHHHHhcC-cccchHHHHHH----------------HHHHhhhc
Confidence            8888766543           34677778888888888887753 22222222222                222221 2


Q ss_pred             CCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhHHHHHHHHHH
Q 037816          389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP---RNSVSWNSMIAAFA  435 (648)
Q Consensus       389 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~  435 (648)
                      ..--..++..+-..|...++++++..+++.+.+   .|.....-++.+|.
T Consensus       219 ~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~  268 (906)
T PRK14720        219 FTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK  268 (906)
T ss_pred             cchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence            233344555566667777777777777776653   34445555555554

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.20  E-value=4.5e-05  Score=64.41  Aligned_cols=114  Identities=9%  Similarity=0.010  Sum_probs=89.0

Q ss_pred             HHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CC
Q 037816          446 LYEEMKLEGVEP-TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PV  523 (648)
Q Consensus       446 ~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~  523 (648)
                      .+++....  .| +......+...+...|++++|.+.++.+...  .+.+...+..+...+.+.|++++|...+++. ..
T Consensus         5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~   80 (135)
T TIGR02552         5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL   80 (135)
T ss_pred             hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            45555553  35 3445666677788889999999999988773  3447888888999999999999999998887 44


Q ss_pred             CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcc
Q 037816          524 KP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP  563 (648)
Q Consensus       524 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  563 (648)
                      .| +...+..+..++...|++++|...++++++..|++...
T Consensus        81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  121 (135)
T TIGR02552        81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY  121 (135)
T ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence            44 46777778888999999999999999999999987553

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.18  E-value=3.8e-05  Score=75.76  Aligned_cols=122  Identities=16%  Similarity=0.131  Sum_probs=87.5

Q ss_pred             HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 037816          462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSI  539 (648)
Q Consensus       462 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~  539 (648)
                      ...|+..+...++++.|..+++++.+.   .|+  ....+++.+...++-.+|.+++++. ...| |...+..-...+.+
T Consensus       172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~  246 (395)
T PF09295_consen  172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS  246 (395)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence            344555566667777777777777653   233  3445666666677777777777666 3333 45555555566788


Q ss_pred             cCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHH
Q 037816          540 HGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMK  588 (648)
Q Consensus       540 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  588 (648)
                      .++++.|+.+.+++.+..|.+..+|..|+.+|...|++++|+-.++.+.
T Consensus       247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            8888888888888888888888888888888888899998888887764

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.13  E-value=0.0003  Score=62.66  Aligned_cols=163  Identities=17%  Similarity=0.162  Sum_probs=132.2

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 037816          426 SWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDV-TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDM  504 (648)
Q Consensus       426 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~  504 (648)
                      .|..++-+....|+.+.|...++.+..+-  |... .-..-.--+-..|.+++|.++++.+.+.  -+.|..++..=+-.
T Consensus        54 l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAi  129 (289)
T KOG3060|consen   54 LYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAI  129 (289)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHH
Confidence            45566677778899999999999998763  4432 2222222356689999999999999984  35577788777777


Q ss_pred             hhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcC---ChHH
Q 037816          505 VGRAGLLIEARSFIERM--PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSG---RWKE  579 (648)
Q Consensus       505 ~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~  579 (648)
                      .-..|+--+|++-+...  .+..|...|.-+...|...|++++|.-.+++++=.+|-++..+..+++.+...|   +++-
T Consensus       130 lka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~  209 (289)
T KOG3060|consen  130 LKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL  209 (289)
T ss_pred             HHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence            77888888888887777  677899999999999999999999999999999999999999999999988776   4667


Q ss_pred             HHHHHHHHHhCCC
Q 037816          580 RAKAIKRMKEMGV  592 (648)
Q Consensus       580 A~~~~~~m~~~~~  592 (648)
                      |.++|.+..+...
T Consensus       210 arkyy~~alkl~~  222 (289)
T KOG3060|consen  210 ARKYYERALKLNP  222 (289)
T ss_pred             HHHHHHHHHHhCh
Confidence            8899998887543

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.10  E-value=0.00011  Score=72.47  Aligned_cols=129  Identities=12%  Similarity=0.116  Sum_probs=103.9

Q ss_pred             hHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 037816          394 FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVG  473 (648)
Q Consensus       394 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g  473 (648)
                      .....|+..+...++++.|..+|+++.+.++.....++..+...++-.+|.+++++..+.. +-+...+..-...|.+.+
T Consensus       170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~  248 (395)
T PF09295_consen  170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK  248 (395)
T ss_pred             HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence            4445667777778899999999999988777777778888888888999999999988653 336666666667788999


Q ss_pred             cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCC
Q 037816          474 LVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKP  525 (648)
Q Consensus       474 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p  525 (648)
                      +++.|+.+.+++...  .+-+..+|..|..+|...|+++.|+-.++.++..|
T Consensus       249 ~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~  298 (395)
T PF09295_consen  249 KYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPMLT  298 (395)
T ss_pred             CHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence            999999999999762  33367799999999999999999999999885443

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.10  E-value=0.00011  Score=62.85  Aligned_cols=114  Identities=18%  Similarity=0.158  Sum_probs=55.3

Q ss_pred             cCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCChHH
Q 037816          472 VGLVNKGMEFLKSMTEVHRISP-RAEHYACVVDMVGRAGLLIEARSFIERM-PVKPDV----LVWQALLGACSIHGDSEM  545 (648)
Q Consensus       472 ~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~  545 (648)
                      .++...+...++.+.+.++-.+ .....-.+...+...|++++|...|+.+ ...||.    .....|...+...|++++
T Consensus        24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~  103 (145)
T PF09976_consen   24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE  103 (145)
T ss_pred             CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            4455555555555554311111 1222333445555555555555555555 112322    122334445555666666


Q ss_pred             HHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHH
Q 037816          546 GKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKR  586 (648)
Q Consensus       546 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  586 (648)
                      |+..++.. ...+-.+..+...+++|.+.|++++|+..|++
T Consensus       104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen  104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            66665442 22223344555666666666666666666654

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.06  E-value=7.7e-06  Score=50.10  Aligned_cols=35  Identities=34%  Similarity=0.533  Sum_probs=31.0

Q ss_pred             ccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCCh
Q 037816          223 ITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNS  257 (648)
Q Consensus       223 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~  257 (648)
                      .+||.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus         1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~   35 (35)
T TIGR00756         1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV   35 (35)
T ss_pred             CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence            37899999999999999999999999999998873

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.06  E-value=0.017  Score=57.54  Aligned_cols=431  Identities=9%  Similarity=0.078  Sum_probs=236.2

Q ss_pred             CcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 037816          119 DTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALI  198 (648)
Q Consensus       119 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li  198 (648)
                      |+.+|+.||+-+..+ ..+++.+.++++..  ..|.....|..-+..-.+.++++..+.+|...+..-+  +...|..-+
T Consensus        19 di~sw~~lire~qt~-~~~~~R~~YEq~~~--~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lYl   93 (656)
T KOG1914|consen   19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVN--VFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLYL   93 (656)
T ss_pred             cHHHHHHHHHHHccC-CHHHHHHHHHHHhc--cCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHHH
Confidence            888999999987666 89999999999875  4677776888888888889999999999988876543  355565555


Q ss_pred             HHhHh-cCChhH----HHHHhccc------CCCCcccHHHHHHH---------HHHCCCchHHHHHHHHHHhCCCCC---
Q 037816          199 TSYFK-CGSSSS----GRKVFGEM------RVRNVITWTAVISG---------LVQNQLYEEGLKLFVKMHLGLINP---  255 (648)
Q Consensus       199 ~~~~~-~g~~~~----A~~~~~~~------~~~~~~~~~~li~~---------~~~~g~~~~a~~~~~~m~~~~~~p---  255 (648)
                      +--.+ .|+...    ..+.|+-.      .-.+-..|+..+..         +..+.+.+...++|+++...-+.-   
T Consensus        94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk  173 (656)
T KOG1914|consen   94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK  173 (656)
T ss_pred             HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence            43322 233222    12222211      11233345544433         233445566677777775421110   


Q ss_pred             ---ChhhHHHHHHHh-------hccCChHHHHHHHHHHHH--hcCCCchhHHHHHHHHHHhcCCHHH--HHHHHHhccC-
Q 037816          256 ---NSLTYLSSVMAC-------SGLQALCEGRQIHGILWK--LALQSDLCIESALMDMYSKCGSVED--AWQIFEFAEE-  320 (648)
Q Consensus       256 ---~~~t~~~ll~~~-------~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~--A~~~~~~~~~-  320 (648)
                         |-.+|..-|+-.       -+...+-.|.++++++..  .|+..+..+       .-..|-.++  ..+++....+ 
T Consensus       174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~-------vp~~~T~~e~~qv~~W~n~I~w  246 (656)
T KOG1914|consen  174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA-------VPPKGTKDEIQQVELWKNWIKW  246 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC-------CCCCCChHHHHHHHHHHHHHHH
Confidence               111121111111       112334455555555543  232211111       000011111  1111111100 


Q ss_pred             --CC--------------cccHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCC-------hhH
Q 037816          321 --LD--------------GVSMTVILVGFAQN-GFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTS-------LGL  376 (648)
Q Consensus       321 --~~--------------~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-------~~~  376 (648)
                        .|              ..+|+..+..+.-. .-|-++...+...-               +.+...|+       .++
T Consensus       247 EksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s---------------~l~~~~~d~~~a~~~t~e  311 (656)
T KOG1914|consen  247 EKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEIS---------------DLLTEKGDVPDAKSLTDE  311 (656)
T ss_pred             HhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhh---------------HHHHHhcccccchhhHHH
Confidence              00              00111111111000 00111111111110               01112222       344


Q ss_pred             HHHHHHHHHHhCCCCchhHHHHHHHHHHhCC---CHHHHHHHHhhcC----CCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 037816          377 GKQIHSLIIKSDFTSNPFVNNGLINMYSKCG---DLEDSIKVFSRMA----PRNSVSWNSMIAAFARHGNGFKALELYEE  449 (648)
Q Consensus       377 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  449 (648)
                      +..+++..+..-...+..+|..+...--..-   +.+.....++++.    ..-..+|..+++.-.+..-...|..+|.+
T Consensus       312 ~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~k  391 (656)
T KOG1914|consen  312 AASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKK  391 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHH
Confidence            5555555544333334444443332211111   2344444444443    22345778888888888888999999999


Q ss_pred             HHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC---CCCC
Q 037816          450 MKLEGVEP-TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM---PVKP  525 (648)
Q Consensus       450 m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p  525 (648)
                      ..+.+..+ ....+++++..+|. ++..-|.++|+--.++  +..++.--...++-+...++-..|..+|++.   .+.|
T Consensus       392 aR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~  468 (656)
T KOG1914|consen  392 AREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSA  468 (656)
T ss_pred             HhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCCh
Confidence            99888777 66777788876664 6788899999987774  4445556667788888999999999999988   2444


Q ss_pred             C--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC----CccHHHHHHHHHhcCChHH
Q 037816          526 D--VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS----PAPYILMANIYSCSGRWKE  579 (648)
Q Consensus       526 ~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~  579 (648)
                      |  ...|..++.--...|+.+.+.++-++.....|.+    ...-....+-|.-.+.+..
T Consensus       469 ~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c  528 (656)
T KOG1914|consen  469 DKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPC  528 (656)
T ss_pred             hhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccc
Confidence            4  5789999988889999999999888887666622    1233344455555555443

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.01  E-value=6.8e-06  Score=62.55  Aligned_cols=78  Identities=21%  Similarity=0.279  Sum_probs=53.3

Q ss_pred             cCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHH
Q 037816          508 AGLLIEARSFIERM-PVKP---DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKA  583 (648)
Q Consensus       508 ~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  583 (648)
                      .|++++|+.+++++ ...|   +...+..+..+|.+.|++++|+.++++ .+.+|.+......++.++.+.|++++|+++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            46677777777766 2222   344555577778888888888888877 666666666666778888888888888887


Q ss_pred             HHH
Q 037816          584 IKR  586 (648)
Q Consensus       584 ~~~  586 (648)
                      +++
T Consensus        81 l~~   83 (84)
T PF12895_consen   81 LEK   83 (84)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            765

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.99  E-value=0.00046  Score=58.90  Aligned_cols=125  Identities=16%  Similarity=0.132  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hhHHHH
Q 037816          426 SWNSMIAAFARHGNGFKALELYEEMKLEGVEPT---DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR--AEHYAC  500 (648)
Q Consensus       426 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~  500 (648)
                      .|..++..+ ..++...+...++.+.+.. +.+   ....-.+...+...|++++|...|+.+... ...|+  ......
T Consensus        14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~   90 (145)
T PF09976_consen   14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLR   90 (145)
T ss_pred             HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHH
Confidence            344445554 4778888888888888754 223   123333456778889999999999988875 32222  234455


Q ss_pred             HHHHhhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 037816          501 VVDMVGRAGLLIEARSFIERM-PVKPDVLVWQALLGACSIHGDSEMGKYAAEKL  553 (648)
Q Consensus       501 l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  553 (648)
                      |...+...|++++|+..++.. +....+..+.....++...|+.++|+..|+++
T Consensus        91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen   91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            778888889999999988776 22234556667778888999999999988875

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=97.99  E-value=1.2e-05  Score=49.17  Aligned_cols=35  Identities=29%  Similarity=0.526  Sum_probs=31.7

Q ss_pred             ccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCc
Q 037816          121 VSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLD  155 (648)
Q Consensus       121 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~  155 (648)
                      .+||++|.+|++.|++++|.++|++|.+.|+.|+.
T Consensus         1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~   35 (35)
T TIGR00756         1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV   35 (35)
T ss_pred             CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence            37999999999999999999999999999988863

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=97.97  E-value=1.2e-05  Score=48.79  Aligned_cols=33  Identities=18%  Similarity=0.376  Sum_probs=29.9

Q ss_pred             ccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC
Q 037816          121 VSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQ  153 (648)
Q Consensus       121 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p  153 (648)
                      .+||.+|.+|++.|+++.|.++|++|.+.|+.|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            579999999999999999999999999998876

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.97  E-value=8.3e-05  Score=58.02  Aligned_cols=93  Identities=22%  Similarity=0.255  Sum_probs=75.7

Q ss_pred             HHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcC
Q 037816          498 YACVVDMVGRAGLLIEARSFIERM-PVKPD-VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSG  575 (648)
Q Consensus       498 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  575 (648)
                      +..+...+...|++++|...+++. ...|+ ...+..+...+...|++++|...++++....|.+..++..++.++...|
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG   82 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence            455677778888888888888876 44443 4667777788888899999999999999888888888889999999999


Q ss_pred             ChHHHHHHHHHHHhC
Q 037816          576 RWKERAKAIKRMKEM  590 (648)
Q Consensus       576 ~~~~A~~~~~~m~~~  590 (648)
                      ++++|...+++..+.
T Consensus        83 ~~~~a~~~~~~~~~~   97 (100)
T cd00189          83 KYEEALEAYEKALEL   97 (100)
T ss_pred             hHHHHHHHHHHHHcc
Confidence            999999998887654

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.96  E-value=0.00011  Score=60.44  Aligned_cols=93  Identities=15%  Similarity=0.076  Sum_probs=52.1

Q ss_pred             HHHHHHHhhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---CccHHHHHH
Q 037816          498 YACVVDMVGRAGLLIEARSFIERM-PVKPD----VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS---PAPYILMAN  569 (648)
Q Consensus       498 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~  569 (648)
                      +..++..+.+.|++++|.+.|+.+ ...|+    ...+..+..++.+.|+++.|...++.+....|.+   +.++..++.
T Consensus         5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~   84 (119)
T TIGR02795         5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM   84 (119)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence            344455555556666666555555 22222    2334445555666666666666666666655553   334556666


Q ss_pred             HHHhcCChHHHHHHHHHHHhC
Q 037816          570 IYSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       570 ~~~~~g~~~~A~~~~~~m~~~  590 (648)
                      ++...|++++|.+.++++.+.
T Consensus        85 ~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        85 SLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             HHHHhCChHHHHHHHHHHHHH
Confidence            666666666666666666554

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=97.96  E-value=1.4e-05  Score=48.60  Aligned_cols=33  Identities=21%  Similarity=0.305  Sum_probs=27.3

Q ss_pred             ccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCC
Q 037816          223 ITWTAVISGLVQNQLYEEGLKLFVKMHLGLINP  255 (648)
Q Consensus       223 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p  255 (648)
                      .+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            578888888888888888888888888888776

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.93  E-value=2.7e-05  Score=56.65  Aligned_cols=65  Identities=18%  Similarity=0.250  Sum_probs=60.1

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcC-ChHHHHHHHHHHHhC
Q 037816          526 DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSG-RWKERAKAIKRMKEM  590 (648)
Q Consensus       526 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~  590 (648)
                      +..+|..+...+...|++++|+..|+++++.+|.++.+|..++.++...| ++++|++.+++..+.
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            46788889999999999999999999999999999999999999999999 799999999998763

...

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.91  E-value=0.026  Score=54.71  Aligned_cols=109  Identities=15%  Similarity=0.155  Sum_probs=70.8

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcH
Q 037816          396 NNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLV  475 (648)
Q Consensus       396 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~  475 (648)
                      .+..+.-+...|+...|.++-.+..=|+...|...+.+|+..++|++-..+...      +-++..|..++.+|...|..
T Consensus       180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~  253 (319)
T PF04840_consen  180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK  253 (319)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence            344455556677777777777777777777777777777777777766654321      12346677777777777777


Q ss_pred             HHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC
Q 037816          476 NKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM  521 (648)
Q Consensus       476 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  521 (648)
                      .+|..++.++.           +..-+..|.++|++.+|.+..-+.
T Consensus       254 ~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~  288 (319)
T PF04840_consen  254 KEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKE  288 (319)
T ss_pred             HHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence            77777666531           133456677777777776665544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.90  E-value=0.00024  Score=58.32  Aligned_cols=105  Identities=12%  Similarity=0.052  Sum_probs=71.6

Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHH
Q 037816          461 TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP-RAEHYACVVDMVGRAGLLIEARSFIERM-PVKPD----VLVWQALL  534 (648)
Q Consensus       461 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~  534 (648)
                      ++..+...+...|++++|...+..+.+.+.-.+ ....+..+..++.+.|++++|.+.++++ ...|+    ...+..+.
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            445556666777777777777777766411111 2345566777777888888888887776 32333    45567777


Q ss_pred             HHHHHcCChHHHHHHHHHHHhcCCCCCccHH
Q 037816          535 GACSIHGDSEMGKYAAEKLFLAQPDSPAPYI  565 (648)
Q Consensus       535 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~  565 (648)
                      .++...|+.++|...++++++..|+++.+..
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  114 (119)
T TIGR02795        84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKL  114 (119)
T ss_pred             HHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence            7888888888888888888888888765443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.82  E-value=0.00039  Score=69.14  Aligned_cols=99  Identities=16%  Similarity=0.066  Sum_probs=58.2

Q ss_pred             HHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChH
Q 037816          467 HACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSE  544 (648)
Q Consensus       467 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~  544 (648)
                      ..+...|+++.|+..|+++.+.  -+.+...|..+..+|.+.|++++|+..++++ .+.| +...|..+..+|...|+++
T Consensus        10 ~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~   87 (356)
T PLN03088         10 KEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ   87 (356)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence            3445556666666666666552  2235555666666666666666666666665 3334 3445555566666666666


Q ss_pred             HHHHHHHHHHhcCCCCCccHHHH
Q 037816          545 MGKYAAEKLFLAQPDSPAPYILM  567 (648)
Q Consensus       545 ~A~~~~~~~~~~~p~~~~~~~~l  567 (648)
                      +|+..++++++++|.++.+...+
T Consensus        88 eA~~~~~~al~l~P~~~~~~~~l  110 (356)
T PLN03088         88 TAKAALEKGASLAPGDSRFTKLI  110 (356)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHH
Confidence            66666666666666665544444

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.82  E-value=4.7e-05  Score=54.55  Aligned_cols=58  Identities=28%  Similarity=0.386  Sum_probs=50.2

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816          533 LLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       533 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  590 (648)
                      +...+...|++++|+..++++++..|.++.++..++.++...|++++|..+++++.+.
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4567888999999999999999999999999999999999999999999999988764

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.81  E-value=0.071  Score=56.66  Aligned_cols=122  Identities=10%  Similarity=0.128  Sum_probs=67.6

Q ss_pred             cCCChhHHHHhhccCCCCCc-ccHHHHHHHH--HhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHH
Q 037816          101 KCDQMRNAVKLFDDMPMRDT-VSWNTMVSGF--LRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKM  177 (648)
Q Consensus       101 ~~g~~~~A~~~~~~~~~~~~-~~y~~li~~~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~  177 (648)
                      ..+++..|....+.+.++.+ ..|..++.++  .+.|+.++|..+++.....+  +++..|...+-.+|.+.+..+++..
T Consensus        21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d~~~~   98 (932)
T KOG2053|consen   21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLDEAVH   98 (932)
T ss_pred             hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhhHHHH
Confidence            35666666666666553221 2244444443  55677777776666655443  3333366666666666777777777


Q ss_pred             HHHHHHHhCCCCChhHHHHHHHHhHhcCChh----HHHHHhcccCCCCcccHH
Q 037816          178 IHCLVYLCGYEEEVTVGNALITSYFKCGSSS----SGRKVFGEMRVRNVITWT  226 (648)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~----~A~~~~~~~~~~~~~~~~  226 (648)
                      +++.....  -|+......+..+|.|.+++.    .|++++...++.--..|+
T Consensus        99 ~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWs  149 (932)
T KOG2053|consen   99 LYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWS  149 (932)
T ss_pred             HHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHH
Confidence            77666543  344555566666666665543    345555544433333343

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.79  E-value=7.8e-05  Score=68.25  Aligned_cols=101  Identities=16%  Similarity=0.077  Sum_probs=85.0

Q ss_pred             HHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCh
Q 037816          467 HACSHVGLVNKGMEFLKSMTEVHRISP-RAEHYACVVDMVGRAGLLIEARSFIERM-PVKPD-VLVWQALLGACSIHGDS  543 (648)
Q Consensus       467 ~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~  543 (648)
                      .-+.+.+++.+|+..|.++++   +.| |...|..-..+|.+.|.++.|++-.+.. .+.|. ..+|..|..+|...|++
T Consensus        89 N~~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~  165 (304)
T KOG0553|consen   89 NKLMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY  165 (304)
T ss_pred             HHHHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence            346678999999999999986   455 8888888999999999999999988877 66665 67799999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCccHHHHHHH
Q 037816          544 EMGKYAAEKLFLAQPDSPAPYILMANI  570 (648)
Q Consensus       544 ~~A~~~~~~~~~~~p~~~~~~~~l~~~  570 (648)
                      ++|++.|+++++++|++......|-.+
T Consensus       166 ~~A~~aykKaLeldP~Ne~~K~nL~~A  192 (304)
T KOG0553|consen  166 EEAIEAYKKALELDPDNESYKSNLKIA  192 (304)
T ss_pred             HHHHHHHHhhhccCCCcHHHHHHHHHH
Confidence            999999999999999997444444433

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.78  E-value=0.00021  Score=65.53  Aligned_cols=101  Identities=18%  Similarity=0.181  Sum_probs=82.1

Q ss_pred             HHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHhhhcC
Q 037816          432 AAFARHGNGFKALELYEEMKLEGVEP-TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP-RAEHYACVVDMVGRAG  509 (648)
Q Consensus       432 ~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g  509 (648)
                      .-+.+.+++.+|+..|.+.++.  .| |.+-|..-..+|++.|.++.|++-.+....   +.| ....|..|..+|...|
T Consensus        89 N~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~g  163 (304)
T KOG0553|consen   89 NKLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLALG  163 (304)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHccC
Confidence            3466788999999999999984  45 566667778889999999999998888865   455 6788999999999999


Q ss_pred             CHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 037816          510 LLIEARSFIERM-PVKPDVLVWQALLGAC  537 (648)
Q Consensus       510 ~~~~A~~~~~~~-~~~p~~~~~~~l~~~~  537 (648)
                      ++++|++.|++. .+.|+..+|..=+...
T Consensus       164 k~~~A~~aykKaLeldP~Ne~~K~nL~~A  192 (304)
T KOG0553|consen  164 KYEEAIEAYKKALELDPDNESYKSNLKIA  192 (304)
T ss_pred             cHHHHHHHHHhhhccCCCcHHHHHHHHHH
Confidence            999999999888 8888877776655543

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.74  E-value=0.0013  Score=62.91  Aligned_cols=155  Identities=8%  Similarity=0.010  Sum_probs=90.9

Q ss_pred             HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHH-------------H
Q 037816          433 AFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHY-------------A  499 (648)
Q Consensus       433 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-------------~  499 (648)
                      ++.-.|++++|...-....+.. ..+......-..++...++.+.|...|++...   +.|+...-             .
T Consensus       178 cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~~k  253 (486)
T KOG0550|consen  178 CLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEVKK  253 (486)
T ss_pred             hhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHHHH
Confidence            4555677777777666665532 11222211112233455666777777766643   34432211             1


Q ss_pred             HHHHHhhhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHh
Q 037816          500 CVVDMVGRAGLLIEARSFIERM-PVKPD-----VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSC  573 (648)
Q Consensus       500 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  573 (648)
                      .=.+-..+.|++.+|.+.|.+. ++.|+     ...|.....+..+.|+.++|+.--+++++++|.-..+|..-+.++..
T Consensus       254 ~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~  333 (486)
T KOG0550|consen  254 ERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLA  333 (486)
T ss_pred             hhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHH
Confidence            1123345667777777777766 44443     34444444555667777777777777777777777777777777777


Q ss_pred             cCChHHHHHHHHHHHhCC
Q 037816          574 SGRWKERAKAIKRMKEMG  591 (648)
Q Consensus       574 ~g~~~~A~~~~~~m~~~~  591 (648)
                      .++|++|++.+++..+..
T Consensus       334 le~~e~AV~d~~~a~q~~  351 (486)
T KOG0550|consen  334 LEKWEEAVEDYEKAMQLE  351 (486)
T ss_pred             HHHHHHHHHHHHHHHhhc
Confidence            777777777777765543

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.71  E-value=0.0004  Score=61.30  Aligned_cols=95  Identities=17%  Similarity=0.110  Sum_probs=64.4

Q ss_pred             hhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHH
Q 037816          495 AEHYACVVDMVGRAGLLIEARSFIERM-PVKPD----VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMAN  569 (648)
Q Consensus       495 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~  569 (648)
                      ...+..+...+...|++++|...|++. ...|+    ...+..+..++.+.|++++|+..++++++..|.+...+..++.
T Consensus        35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~  114 (172)
T PRK02603         35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV  114 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            344555666666667777777666665 22222    3456677777788888888888888888888887777777777


Q ss_pred             HHHhcCC--------------hHHHHHHHHHHHh
Q 037816          570 IYSCSGR--------------WKERAKAIKRMKE  589 (648)
Q Consensus       570 ~~~~~g~--------------~~~A~~~~~~m~~  589 (648)
                      ++...|+              +++|.+++++..+
T Consensus       115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~  148 (172)
T PRK02603        115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR  148 (172)
T ss_pred             HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence            7777666              4566666666555

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.68  E-value=0.00042  Score=60.97  Aligned_cols=94  Identities=14%  Similarity=-0.038  Sum_probs=75.2

Q ss_pred             ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHH
Q 037816          494 RAEHYACVVDMVGRAGLLIEARSFIERM-PVKPD----VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA  568 (648)
Q Consensus       494 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~  568 (648)
                      ....+..+...+...|++++|+..|++. .+.|+    ..++..+...+...|++++|+..++++++..|.....+..++
T Consensus        34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la  113 (168)
T CHL00033         34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA  113 (168)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence            4556677777788888888888888877 33332    357888888999999999999999999999999888888888


Q ss_pred             HHHH-------hcCChHHHHHHHHHH
Q 037816          569 NIYS-------CSGRWKERAKAIKRM  587 (648)
Q Consensus       569 ~~~~-------~~g~~~~A~~~~~~m  587 (648)
                      .++.       ..|++++|...+++.
T Consensus       114 ~i~~~~~~~~~~~g~~~~A~~~~~~a  139 (168)
T CHL00033        114 VICHYRGEQAIEQGDSEIAEAWFDQA  139 (168)
T ss_pred             HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence            8888       888888777666654

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.64  E-value=0.00075  Score=67.12  Aligned_cols=102  Identities=12%  Similarity=0.039  Sum_probs=83.3

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcC
Q 037816          430 MIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG  509 (648)
Q Consensus       430 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  509 (648)
                      ....+...|++++|+..|++.++.. +-+...|..+..+|...|++++|+..++++.+.  -+.+...|..+..+|...|
T Consensus         8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence            3456678899999999999999865 336678888889999999999999999999873  2347788999999999999


Q ss_pred             CHHHHHHHHHhC-CCCCCHHHHHHHH
Q 037816          510 LLIEARSFIERM-PVKPDVLVWQALL  534 (648)
Q Consensus       510 ~~~~A~~~~~~~-~~~p~~~~~~~l~  534 (648)
                      ++++|+..|++. .+.|+.......+
T Consensus        85 ~~~eA~~~~~~al~l~P~~~~~~~~l  110 (356)
T PLN03088         85 EYQTAKAALEKGASLAPGDSRFTKLI  110 (356)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            999999999998 6667655444443

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.62  E-value=0.00069  Score=52.61  Aligned_cols=92  Identities=21%  Similarity=0.172  Sum_probs=46.1

Q ss_pred             HHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC
Q 037816          465 LLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGD  542 (648)
Q Consensus       465 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~  542 (648)
                      +...+...|++++|...++++.+.  .+.+...+..+...+...|++++|.+.+++. ...| +..++..+...+...|+
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (100)
T cd00189           6 LGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK   83 (100)
T ss_pred             HHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence            333444455555555555555431  1222344444555555555555555555544 2222 23445555556666666


Q ss_pred             hHHHHHHHHHHHhcCC
Q 037816          543 SEMGKYAAEKLFLAQP  558 (648)
Q Consensus       543 ~~~A~~~~~~~~~~~p  558 (648)
                      ++.|...++++.+..|
T Consensus        84 ~~~a~~~~~~~~~~~~   99 (100)
T cd00189          84 YEEALEAYEKALELDP   99 (100)
T ss_pred             HHHHHHHHHHHHccCC
Confidence            6666666666655544

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.61  E-value=0.0002  Score=52.72  Aligned_cols=59  Identities=20%  Similarity=0.235  Sum_probs=53.8

Q ss_pred             HHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037816          534 LGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGV  592 (648)
Q Consensus       534 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~  592 (648)
                      ...|.+.+++++|++.+++++..+|.++..+...+.++...|++++|.+.+++..+.+.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p   60 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP   60 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence            35688999999999999999999999999999999999999999999999999987553

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.61  E-value=7.6e-05  Score=44.04  Aligned_cols=31  Identities=32%  Similarity=0.521  Sum_probs=23.7

Q ss_pred             ccHHHHHHHHHHCCCchHHHHHHHHHHhCCC
Q 037816          223 ITWTAVISGLVQNQLYEEGLKLFVKMHLGLI  253 (648)
Q Consensus       223 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~  253 (648)
                      ++||.+|++|++.|++++|.++|++|.+.|+
T Consensus         1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            3678888888888888888888888877653

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.61  E-value=0.0031  Score=65.59  Aligned_cols=139  Identities=17%  Similarity=0.084  Sum_probs=64.5

Q ss_pred             CCChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcc--------CcHHHHHHHHHHhH
Q 037816          421 PRNSVSWNSMIAAFARH-----GNGFKALELYEEMKLEGVEPTD-VTFLSLLHACSHV--------GLVNKGMEFLKSMT  486 (648)
Q Consensus       421 ~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~--------g~~~~A~~~~~~~~  486 (648)
                      ..+...|...+.+....     ++...|..+|++..+.  .|+. ..+..+..++...        .+...+.+...+..
T Consensus       334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~  411 (517)
T PRK10153        334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV  411 (517)
T ss_pred             CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence            34566666666654332     2266777788887774  3653 3344333322111        11222222222222


Q ss_pred             HhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 037816          487 EVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSP  561 (648)
Q Consensus       487 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~  561 (648)
                      .......++..|..+.-.+...|++++|...++++ ...|+...|..+...+...|+.++|.+.++++..++|.++
T Consensus       412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p  487 (517)
T PRK10153        412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN  487 (517)
T ss_pred             hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence            11011223344444444444445555555555554 3444444455555555555555555555555555555544

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.60  E-value=8.1e-05  Score=43.92  Aligned_cols=31  Identities=29%  Similarity=0.691  Sum_probs=25.9

Q ss_pred             ccHHHHHHHHHhcCCchHHHHHHHHHHHcCC
Q 037816          121 VSWNTMVSGFLRNGEFDMGFGFFKRSLELGF  151 (648)
Q Consensus       121 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~  151 (648)
                      .+||.+|++|++.|++++|.++|++|.+.|+
T Consensus         1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            3788888888888888888888888888763

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.57  E-value=0.002  Score=59.62  Aligned_cols=101  Identities=13%  Similarity=0.027  Sum_probs=85.0

Q ss_pred             CCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc---CChHHHHHHHHHHHhcCCCCCccHHH
Q 037816          492 SPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIH---GDSEMGKYAAEKLFLAQPDSPAPYIL  566 (648)
Q Consensus       492 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~p~~~~~~~~  566 (648)
                      +-|...|..|...|...|+...|..-|.+. .+.| ++..+..+..++...   .+..++..+++++++.+|.|..+...
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l  232 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL  232 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence            448999999999999999999999999887 4444 455666666665433   36778899999999999999999999


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhCCC
Q 037816          567 MANIYSCSGRWKERAKAIKRMKEMGV  592 (648)
Q Consensus       567 l~~~~~~~g~~~~A~~~~~~m~~~~~  592 (648)
                      ++..+...|++.+|...++.|.+...
T Consensus       233 LA~~afe~g~~~~A~~~Wq~lL~~lp  258 (287)
T COG4235         233 LAFAAFEQGDYAEAAAAWQMLLDLLP  258 (287)
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhcCC
Confidence            99999999999999999999998654

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.56  E-value=0.003  Score=55.73  Aligned_cols=130  Identities=15%  Similarity=0.141  Sum_probs=77.1

Q ss_pred             hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 037816          424 SVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT--DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV  501 (648)
Q Consensus       424 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l  501 (648)
                      ...+..+...+...|++++|...|++..+.+..+.  ...+..+...+.+.|++++|...+++..+.  .+.+...+..+
T Consensus        35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l  112 (172)
T PRK02603         35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNI  112 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHH
Confidence            44566666667777777777777777765432221  245666666677777777777777776652  22245555555


Q ss_pred             HHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCC
Q 037816          502 VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGR  576 (648)
Q Consensus       502 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  576 (648)
                      ..+|...|+...+..-++..                  ...+++|.++++++.+.+|++   |..++..+...|+
T Consensus       113 g~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~  166 (172)
T PRK02603        113 AVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR  166 (172)
T ss_pred             HHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence            66666666554444322221                  012677888888888888876   4444444444443

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.56  E-value=0.098  Score=51.28  Aligned_cols=188  Identities=15%  Similarity=0.123  Sum_probs=108.5

Q ss_pred             hHHHHHHHHHHhCCCHHHHHHHHhhcC--CCChhH-------HHHHHHHHH----HcCChHHHHHHHHHHHHcCCCCCHH
Q 037816          394 FVNNGLINMYSKCGDLEDSIKVFSRMA--PRNSVS-------WNSMIAAFA----RHGNGFKALELYEEMKLEGVEPTDV  460 (648)
Q Consensus       394 ~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~-------~~~l~~~~~----~~~~~~~A~~~~~~m~~~~~~p~~~  460 (648)
                      .++..++....+.++...|.+.+.-+.  +|+...       -..+-+..+    ..-+...-+.+|......+  .|..
T Consensus       299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~D--iDrq  376 (549)
T PF07079_consen  299 DRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYD--IDRQ  376 (549)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc--ccHH
Confidence            345555666666677766666655443  222111       111112222    1112334455666666544  3322


Q ss_pred             -HHHHHHH---HHhccCc-HHHHHHHHHHhHHhcCCCC-ChhHHHHHHH----Hhhhc---CCHH---HHHHHHHhCCCC
Q 037816          461 -TFLSLLH---ACSHVGL-VNKGMEFLKSMTEVHRISP-RAEHYACVVD----MVGRA---GLLI---EARSFIERMPVK  524 (648)
Q Consensus       461 -~~~~ll~---~~~~~g~-~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~----~~~~~---g~~~---~A~~~~~~~~~~  524 (648)
                       ....++.   -+-+.|. -++|+++++.+.+   +.| |..+-|.+..    .|..+   ..+.   +-..+.++.|+.
T Consensus       377 QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~  453 (549)
T PF07079_consen  377 QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLT  453 (549)
T ss_pred             HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence             2222332   2445555 7888898888876   333 4433332221    22211   1122   223334455666


Q ss_pred             C----CHHHHHHHHHH--HHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHH
Q 037816          525 P----DVLVWQALLGA--CSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRM  587 (648)
Q Consensus       525 p----~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m  587 (648)
                      |    +...-|.|..|  +..+|++.++.-.-..+.+..| ++.+|..++-++....+|++|..+++.+
T Consensus       454 ~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L  521 (549)
T PF07079_consen  454 PITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL  521 (549)
T ss_pred             cccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence            5    34456666666  5678999999998888889999 7899999999999999999999999875

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.54  E-value=0.00024  Score=53.93  Aligned_cols=79  Identities=19%  Similarity=0.264  Sum_probs=37.1

Q ss_pred             cCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHhhhcCCHHHH
Q 037816          437 HGNGFKALELYEEMKLEGVE-PTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP-RAEHYACVVDMVGRAGLLIEA  514 (648)
Q Consensus       437 ~~~~~~A~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A  514 (648)
                      .|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++. .+   ..| +......+..+|.+.|++++|
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~---~~~~~~~~~~l~a~~~~~l~~y~eA   77 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK---LDPSNPDIHYLLARCLLKLGKYEEA   77 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT---HHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC---CCCCCHHHHHHHHHHHHHhCCHHHH
Confidence            35556666666666554311 1223333345555666666666666655 11   112 223333445555555555555


Q ss_pred             HHHHH
Q 037816          515 RSFIE  519 (648)
Q Consensus       515 ~~~~~  519 (648)
                      +++++
T Consensus        78 i~~l~   82 (84)
T PF12895_consen   78 IKALE   82 (84)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            55554

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.53  E-value=0.0024  Score=61.16  Aligned_cols=134  Identities=12%  Similarity=0.155  Sum_probs=96.9

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 037816          425 VSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHA-CSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVD  503 (648)
Q Consensus       425 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~  503 (648)
                      .+|-.++...-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+.  +..+...|...++
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~   78 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD   78 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence            357777888888888888999998888543 2234444444333 33356777799999999884  5667888888899


Q ss_pred             HhhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 037816          504 MVGRAGLLIEARSFIERM-PVKPDV----LVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSP  561 (648)
Q Consensus       504 ~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~  561 (648)
                      .+.+.|+.+.|..+|++. ..-|..    ..|...+..-.+.|+.+....+.+++.+..|.+.
T Consensus        79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~  141 (280)
T PF05843_consen   79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN  141 (280)
T ss_dssp             HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred             HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence            999999999999999987 333333    4788888888889999999999999988887743

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.53  E-value=0.00011  Score=53.14  Aligned_cols=53  Identities=25%  Similarity=0.415  Sum_probs=45.3

Q ss_pred             HHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816          538 SIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       538 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  590 (648)
                      ...|++++|+..+++++...|.+..++..++.+|.+.|++++|.++++++...
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~   54 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ   54 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            46788999999999999999999889999999999999999999988887664

...

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.50  E-value=0.00041  Score=49.60  Aligned_cols=61  Identities=20%  Similarity=0.204  Sum_probs=48.8

Q ss_pred             HHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 037816          501 VVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSP  561 (648)
Q Consensus       501 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~  561 (648)
                      +...+.+.|++++|.+.|+++ ...| +...+..+..++...|++++|+..++++++..|+++
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            456778889999999999888 5556 466788888889999999999999999999998864

>PRK15331 chaperone protein SicA; Provisional

Probab=97.46  E-value=0.0095  Score=50.26  Aligned_cols=89  Identities=11%  Similarity=0.032  Sum_probs=76.0

Q ss_pred             HHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChH
Q 037816          501 VVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWK  578 (648)
Q Consensus       501 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~  578 (648)
                      ...-+...|++++|..+|+-+ -..| +..-|..|..++...+++++|+..|..+..+.++||.++...+.+|...|+.+
T Consensus        43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~  122 (165)
T PRK15331         43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA  122 (165)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence            344456789999999999877 2222 45567788888888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 037816          579 ERAKAIKRMKE  589 (648)
Q Consensus       579 ~A~~~~~~m~~  589 (648)
                      .|...|+...+
T Consensus       123 ~A~~~f~~a~~  133 (165)
T PRK15331        123 KARQCFELVNE  133 (165)
T ss_pred             HHHHHHHHHHh
Confidence            99999998866

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.43  E-value=0.021  Score=48.69  Aligned_cols=129  Identities=16%  Similarity=0.131  Sum_probs=95.7

Q ss_pred             CCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC------CCCCCHH
Q 037816          455 VEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM------PVKPDVL  528 (648)
Q Consensus       455 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------~~~p~~~  528 (648)
                      ..|+...-..|..++...|+..+|...|++...- -+-.|......+.++....+++..|...+++.      .-.||. 
T Consensus        85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~-  162 (251)
T COG4700          85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG-  162 (251)
T ss_pred             hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc-
Confidence            4577777777888888888888888888888762 34447888888888888888888888888877      223443 


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHH
Q 037816          529 VWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRM  587 (648)
Q Consensus       529 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m  587 (648)
                       ...+.+++...|.++.|+..|+.++.--|. +......+..+.++|+.++|..-+-.+
T Consensus       163 -~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v  219 (251)
T COG4700         163 -HLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAV  219 (251)
T ss_pred             -hHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence             445677888889999899999888887765 455566667788888877776544443

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.43  E-value=0.006  Score=63.52  Aligned_cols=138  Identities=14%  Similarity=0.126  Sum_probs=100.9

Q ss_pred             CCCCCHHHHHHHHHHHhc--c---CcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHhhhc--------CCHHHHHHHHH
Q 037816          454 GVEPTDVTFLSLLHACSH--V---GLVNKGMEFLKSMTEVHRISPR-AEHYACVVDMVGRA--------GLLIEARSFIE  519 (648)
Q Consensus       454 ~~~p~~~~~~~ll~~~~~--~---g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------g~~~~A~~~~~  519 (648)
                      +.+.|...|..++++...  .   ++...|..+|+++.+.   .|+ ...+..+..+|...        +++..+.+..+
T Consensus       332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~  408 (517)
T PRK10153        332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD  408 (517)
T ss_pred             cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence            345678888888887532  2   3477899999999873   664 45555544444322        22345555555


Q ss_pred             hC----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 037816          520 RM----PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKE  595 (648)
Q Consensus       520 ~~----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~  595 (648)
                      +.    ....++..|..+.-.+...|++++|...++++++++| +...|..++.++...|+.++|.+.+++........+
T Consensus       409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p  487 (517)
T PRK10153        409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN  487 (517)
T ss_pred             HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence            53    1334567788787777788999999999999999999 578999999999999999999999999988654433

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.37  E-value=0.0021  Score=61.51  Aligned_cols=129  Identities=15%  Similarity=0.094  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhh-cCCHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 037816          460 VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR-AGLLIEARSFIERM--PVKPDVLVWQALLGA  536 (648)
Q Consensus       460 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~  536 (648)
                      .+|..+++.+-+.+..+.|..+|.++.+.  -..+..+|......-.. .++.+.|.++|+..  .+..+...|...+..
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            46788889999999999999999999863  33355666666665334 56677799999998  455677889999999


Q ss_pred             HHHcCChHHHHHHHHHHHhcCCCCC---ccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816          537 CSIHGDSEMGKYAAEKLFLAQPDSP---APYILMANIYSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       537 ~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  590 (648)
                      +...|+.+.|..+|++++...|.+.   .+|...+..=.+.|+.+.+..+.+++.+.
T Consensus        80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~  136 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL  136 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            9999999999999999998876654   58889999888999999999999998763

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.36  E-value=0.0024  Score=49.50  Aligned_cols=80  Identities=13%  Similarity=0.034  Sum_probs=67.6

Q ss_pred             HHHHHHHHHCCCchHHHHHHHHHHhCCC-CCChhhHHHHHHHhhccC--------ChHHHHHHHHHHHHhcCCCchhHHH
Q 037816          226 TAVISGLVQNQLYEEGLKLFVKMHLGLI-NPNSLTYLSSVMACSGLQ--------ALCEGRQIHGILWKLALQSDLCIES  296 (648)
Q Consensus       226 ~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~  296 (648)
                      ...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..        .+-....+++.|+..+++|+..+|+
T Consensus        29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn  108 (120)
T PF08579_consen   29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN  108 (120)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence            3456777777999999999999999999 999999999999887653        2445778899999999999999999


Q ss_pred             HHHHHHHhc
Q 037816          297 ALMDMYSKC  305 (648)
Q Consensus       297 ~l~~~~~~~  305 (648)
                      .++..+.+.
T Consensus       109 ivl~~Llkg  117 (120)
T PF08579_consen  109 IVLGSLLKG  117 (120)
T ss_pred             HHHHHHHHh
Confidence            998877653

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.36  E-value=0.16  Score=48.88  Aligned_cols=276  Identities=16%  Similarity=0.150  Sum_probs=176.9

Q ss_pred             cCCHHHHHHHHHhcc---CCCcccHHHHHHH--HHHcCCHHHHHHHHHHHHHcCCCcCHH--HHHHHHHHHhccCChhHH
Q 037816          305 CGSVEDAWQIFEFAE---ELDGVSMTVILVG--FAQNGFEEEAMQLFVKMVKAGIEIDPN--MVSAVLGVFGVDTSLGLG  377 (648)
Q Consensus       305 ~~~~~~A~~~~~~~~---~~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~a  377 (648)
                      .|+-..|.++-.+..   ..|....-.++.+  -.-.|+++.|.+-|+.|...   |...  -+..|.-..-+.|..+.|
T Consensus        97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaA  173 (531)
T COG3898          97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAA  173 (531)
T ss_pred             cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHH
Confidence            345555555443322   2344433334332  34468888888888888652   2221  222333334467788888


Q ss_pred             HHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC-----CCChh--HHHHHHHHHH---HcCChHHHHHHH
Q 037816          378 KQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA-----PRNSV--SWNSMIAAFA---RHGNGFKALELY  447 (648)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~--~~~~l~~~~~---~~~~~~~A~~~~  447 (648)
                      .++-...-..- +.-.....+.+...|..|+++.|+++.+.-.     +++..  .-..|+.+-.   -.-+...|...-
T Consensus       174 r~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A  252 (531)
T COG3898         174 RHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA  252 (531)
T ss_pred             HHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence            77776665443 3445677888899999999999999987654     33332  1222222211   123456666666


Q ss_pred             HHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC----C
Q 037816          448 EEMKLEGVEPTDV-TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM----P  522 (648)
Q Consensus       448 ~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~  522 (648)
                      .+..+  +.||-. .-..-..++.+.|+..++-.+++.+.+.   .|.+.++...  .+.+.|+.  +..-+++.    .
T Consensus       253 ~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY--~~ar~gdt--a~dRlkRa~~L~s  323 (531)
T COG3898         253 LEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLY--VRARSGDT--ALDRLKRAKKLES  323 (531)
T ss_pred             HHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHH--HHhcCCCc--HHHHHHHHHHHHh
Confidence            55555  567644 3334557789999999999999999764   6666655433  34555653  22222222    3


Q ss_pred             CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhc-CChHHHHHHHHHHHhCCCCC
Q 037816          523 VKPD-VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCS-GRWKERAKAIKRMKEMGVDK  594 (648)
Q Consensus       523 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~~  594 (648)
                      .+|+ ..+...+..+....|++..|..-.+.+....|.. .+|..|+++-... |+-.++.+++-+..+..-.|
T Consensus       324 lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP  396 (531)
T COG3898         324 LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP  396 (531)
T ss_pred             cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence            4554 6667777888899999999999999999998885 7888888887654 99999999999988865554

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.35  E-value=0.0032  Score=48.81  Aligned_cols=77  Identities=14%  Similarity=0.062  Sum_probs=65.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCC-CcCHHHHHHHHHHHhccC--------ChhHHHHHHHHHHHhCCCCchhHHHHH
Q 037816          329 ILVGFAQNGFEEEAMQLFVKMVKAGI-EIDPNMVSAVLGVFGVDT--------SLGLGKQIHSLIIKSDFTSNPFVNNGL  399 (648)
Q Consensus       329 li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~l  399 (648)
                      .|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..        ++-....+|+.|...+++|+..+|+.+
T Consensus        31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv  110 (120)
T PF08579_consen   31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV  110 (120)
T ss_pred             HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence            45566677999999999999999999 999999999999887543        244667789999999999999999999


Q ss_pred             HHHHHh
Q 037816          400 INMYSK  405 (648)
Q Consensus       400 i~~~~~  405 (648)
                      +..+.+
T Consensus       111 l~~Llk  116 (120)
T PF08579_consen  111 LGSLLK  116 (120)
T ss_pred             HHHHHH
Confidence            988765

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.33  E-value=0.18  Score=49.01  Aligned_cols=44  Identities=18%  Similarity=0.199  Sum_probs=27.1

Q ss_pred             HHHHHHHHHhcCCChhHHHHhhccCCCCCcccHHHHHHHHHhcCCchHH
Q 037816           91 IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMG  139 (648)
Q Consensus        91 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A  139 (648)
                      .|..+...-...|+.+-|..+++.=+.+.     .=|-.+.+.|+.+.|
T Consensus         2 S~a~IA~~A~~~GR~~LA~~LL~~Ep~~~-----~qVplLL~m~e~e~A   45 (319)
T PF04840_consen    2 SYAEIARKAYEEGRPKLATKLLELEPRAS-----KQVPLLLKMGEDELA   45 (319)
T ss_pred             CHHHHHHHHHHcChHHHHHHHHHcCCChH-----HHHHHHhcCCchHHH
Confidence            35566677777899999998887655431     113444445555544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.32  E-value=0.13  Score=49.55  Aligned_cols=160  Identities=11%  Similarity=0.105  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhcc-CChHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 037816          225 WTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGL-QALCEGRQIHGILWKLALQSDLCIESALMDMYS  303 (648)
Q Consensus       225 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  303 (648)
                      |...+..|...|++..|-+++..+-+               .+... |+++.|.+.|+...+               .|.
T Consensus        97 ~~~A~~~y~~~G~~~~aA~~~~~lA~---------------~ye~~~~d~e~Ai~~Y~~A~~---------------~y~  146 (282)
T PF14938_consen   97 YEKAIEIYREAGRFSQAAKCLKELAE---------------IYEEQLGDYEKAIEYYQKAAE---------------LYE  146 (282)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHH---------------HHCCTT--HHHHHHHHHHHHH---------------HHH
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHH---------------HHHHHcCCHHHHHHHHHHHHH---------------HHH
Confidence            34445666667777666666555422               23333 556666655554432               222


Q ss_pred             hcCCHHHHHHHHHhccCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----cCHH-HHHHHHHHHhccCChhHH
Q 037816          304 KCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIE-----IDPN-MVSAVLGVFGVDTSLGLG  377 (648)
Q Consensus       304 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-----p~~~-~~~~ll~~~~~~~~~~~a  377 (648)
                      ..|....+.++           +..+...+.+.|++++|.++|++.......     .+.. .|...+-++...|++-.|
T Consensus       147 ~e~~~~~a~~~-----------~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A  215 (282)
T PF14938_consen  147 QEGSPHSAAEC-----------LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAA  215 (282)
T ss_dssp             HTT-HHHHHHH-----------HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred             HCCChhhHHHH-----------HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHH
Confidence            23322222222           223445566677777777777766553221     1111 122222344445666666


Q ss_pred             HHHHHHHHHh--CCCCc--hhHHHHHHHHHHh--CCCHHHHHHHHhhcCCCChh
Q 037816          378 KQIHSLIIKS--DFTSN--PFVNNGLINMYSK--CGDLEDSIKVFSRMAPRNSV  425 (648)
Q Consensus       378 ~~~~~~~~~~--~~~~~--~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~  425 (648)
                      ...++.....  ++..+  ..+...|+.++-.  ...++.+..-|+.+.+-|.-
T Consensus       216 ~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w  269 (282)
T PF14938_consen  216 RKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNW  269 (282)
T ss_dssp             HHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HH
T ss_pred             HHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHH
Confidence            6666665533  22222  2344455555543  34566667777766655543

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.30  E-value=0.067  Score=49.94  Aligned_cols=173  Identities=10%  Similarity=0.050  Sum_probs=100.0

Q ss_pred             HHHHHHhCCCHHHHHHHHhhcCC--CC-hhH---HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-
Q 037816          399 LINMYSKCGDLEDSIKVFSRMAP--RN-SVS---WNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSH-  471 (648)
Q Consensus       399 li~~~~~~g~~~~A~~~~~~~~~--~~-~~~---~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~-  471 (648)
                      ....+...|++++|.+.|+.+..  |+ ...   .-.+..++.+.+++++|...+++..+....-....+...+.+.+. 
T Consensus        38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~  117 (243)
T PRK10866         38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM  117 (243)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence            33445567788888877777753  21 111   223456677788888888888888775311112233333333221 


Q ss_pred             -cC---------------c---HHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 037816          472 -VG---------------L---VNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQA  532 (648)
Q Consensus       472 -~g---------------~---~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~  532 (648)
                       .+               +   ...|...|+.+.+.                |=...-..+|..-+..+....-.. --.
T Consensus       118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~----------------yP~S~ya~~A~~rl~~l~~~la~~-e~~  180 (243)
T PRK10866        118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG----------------YPNSQYTTDATKRLVFLKDRLAKY-ELS  180 (243)
T ss_pred             hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH----------------CcCChhHHHHHHHHHHHHHHHHHH-HHH
Confidence             10               1   12344444444442                222223344443333331000011 113


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHhcCCCCC---ccHHHHHHHHHhcCChHHHHHHHHHHH
Q 037816          533 LLGACSIHGDSEMGKYAAEKLFLAQPDSP---APYILMANIYSCSGRWKERAKAIKRMK  588 (648)
Q Consensus       533 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~  588 (648)
                      +..-|.+.|.+..|+.-++.+++.-|..+   .+...++.+|...|..++|.++...+.
T Consensus       181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~  239 (243)
T PRK10866        181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA  239 (243)
T ss_pred             HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence            45668899999999999999998887754   567788899999999999998877653

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.29  E-value=0.0042  Score=50.18  Aligned_cols=87  Identities=17%  Similarity=0.045  Sum_probs=51.6

Q ss_pred             HHHHhhhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---CCccHHHHHHHHH
Q 037816          501 VVDMVGRAGLLIEARSFIERM---PVKPD--VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD---SPAPYILMANIYS  572 (648)
Q Consensus       501 l~~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~  572 (648)
                      +..++-..|+.++|+.+|++.   +....  ...+-.+..++...|++++|+.++++.....|+   +......++-++.
T Consensus         7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~   86 (120)
T PF12688_consen    7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY   86 (120)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence            344555566666666666655   22221  233444556666677777777777777666665   4445555566666


Q ss_pred             hcCChHHHHHHHHHH
Q 037816          573 CSGRWKERAKAIKRM  587 (648)
Q Consensus       573 ~~g~~~~A~~~~~~m  587 (648)
                      ..|+.++|++.+-..
T Consensus        87 ~~gr~~eAl~~~l~~  101 (120)
T PF12688_consen   87 NLGRPKEALEWLLEA  101 (120)
T ss_pred             HCCCHHHHHHHHHHH
Confidence            777777777665443

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.26  E-value=0.065  Score=54.62  Aligned_cols=282  Identities=12%  Similarity=0.140  Sum_probs=133.0

Q ss_pred             CCChHHHHHHHHHHHhcCCChhHHHHhhccCCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHH
Q 037816           85 VPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILS  164 (648)
Q Consensus        85 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~  164 (648)
                      +.|....+..-+..|...|.+++|..+----.  ...-|..|...-...=+++-|.+.|.+.+..        -|..++.
T Consensus       552 i~~~evp~~~~m~q~Ieag~f~ea~~iaclgV--v~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl--------~~L~li~  621 (1081)
T KOG1538|consen  552 ISAVEVPQSAPMYQYIERGLFKEAYQIACLGV--TDTDWRELAMEALEALDFETARKAYIRVRDL--------RYLELIS  621 (1081)
T ss_pred             eecccccccccchhhhhccchhhhhcccccce--ecchHHHHHHHHHhhhhhHHHHHHHHHHhcc--------HHHHHHH
Confidence            35555555555666777777777655421111  1222444544444444555555555444332        2222222


Q ss_pred             HhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccCCCCcccHHHHHHHHHHCCCchHHHHH
Q 037816          165 ACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKL  244 (648)
Q Consensus       165 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  244 (648)
                                   -++.+.+.|-.|+...   +...++-.|.+.+|.++|.+                  .|.-..|+++
T Consensus       622 -------------EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEm  667 (1081)
T KOG1538|consen  622 -------------ELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SGHENRALEM  667 (1081)
T ss_pred             -------------HHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHH
Confidence                         2345566676676655   44556677888888777654                  4555555555


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCcc
Q 037816          245 FVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGV  324 (648)
Q Consensus       245 ~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  324 (648)
                      |.+|+-.          -...-+...|+.++-..+.+.--+..  .++.--.+-..++..+|+.++|..+.         
T Consensus       668 yTDlRMF----------D~aQE~~~~g~~~eKKmL~RKRA~WA--r~~kePkaAAEmLiSaGe~~KAi~i~---------  726 (1081)
T KOG1538|consen  668 YTDLRMF----------DYAQEFLGSGDPKEKKMLIRKRADWA--RNIKEPKAAAEMLISAGEHVKAIEIC---------  726 (1081)
T ss_pred             HHHHHHH----------HHHHHHhhcCChHHHHHHHHHHHHHh--hhcCCcHHHHHHhhcccchhhhhhhh---------
Confidence            5555320          11222233333333333322211110  00000022334445556655555432         


Q ss_pred             cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 037816          325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYS  404 (648)
Q Consensus       325 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  404 (648)
                               ..+|-.+-+.++-+++-    ..+..+...+..-+-+...+..|.++|..|-+.         .++++...
T Consensus       727 ---------~d~gW~d~lidI~rkld----~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHv  784 (1081)
T KOG1538|consen  727 ---------GDHGWVDMLIDIARKLD----KAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHV  784 (1081)
T ss_pred             ---------hcccHHHHHHHHHhhcc----hhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhhee
Confidence                     22233333333333321    122233333333344445555555565554322         23555556


Q ss_pred             hCCCHHHHHHHHhhcCC--CChh-----------HHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 037816          405 KCGDLEDSIKVFSRMAP--RNSV-----------SWNSMIAAFARHGNGFKALELYEEMKLE  453 (648)
Q Consensus       405 ~~g~~~~A~~~~~~~~~--~~~~-----------~~~~l~~~~~~~~~~~~A~~~~~~m~~~  453 (648)
                      ..+++++|..+-++.++  +|+.           -|...-.+|.+.|+-.+|..+++++...
T Consensus       785 e~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn  846 (1081)
T KOG1538|consen  785 ETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN  846 (1081)
T ss_pred             ecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence            66666666666666553  2211           1222334566778888888888877653

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.26  E-value=0.038  Score=46.51  Aligned_cols=95  Identities=5%  Similarity=-0.033  Sum_probs=52.2

Q ss_pred             ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 037816          423 NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP-TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV  501 (648)
Q Consensus       423 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l  501 (648)
                      +....-.+..-+...|++++|..+|+-+....  | +..-|..|.-+|-..|++++|+..|...... . +.++..+-.+
T Consensus        34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L-~-~ddp~~~~~a  109 (157)
T PRK15363         34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI-K-IDAPQAPWAA  109 (157)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-C-CCCchHHHHH
Confidence            33333344444555666666666666665532  3 3334444555555566666666666666542 1 2355556666


Q ss_pred             HHHhhhcCCHHHHHHHHHhC
Q 037816          502 VDMVGRAGLLIEARSFIERM  521 (648)
Q Consensus       502 ~~~~~~~g~~~~A~~~~~~~  521 (648)
                      ..++...|+.+.|.+.|+..
T Consensus       110 g~c~L~lG~~~~A~~aF~~A  129 (157)
T PRK15363        110 AECYLACDNVCYAIKALKAV  129 (157)
T ss_pred             HHHHHHcCCHHHHHHHHHHH
Confidence            66666666666666665544

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.24  E-value=0.0008  Score=48.80  Aligned_cols=65  Identities=23%  Similarity=0.195  Sum_probs=50.3

Q ss_pred             ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCC
Q 037816          494 RAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHG-DSEMGKYAAEKLFLAQP  558 (648)
Q Consensus       494 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p  558 (648)
                      ++..|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|++.++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            3456777777888888888888888777 4445 4666778888888888 68889999988888877

...

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.22  E-value=0.0049  Score=61.43  Aligned_cols=116  Identities=9%  Similarity=0.043  Sum_probs=72.9

Q ss_pred             chhHHHHHHHHHHhcCCHHHHHHHHHhccCC------CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHH
Q 037816          291 DLCIESALMDMYSKCGSVEDAWQIFEFAEEL------DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAV  364 (648)
Q Consensus       291 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l  364 (648)
                      +......+++.+....+++.+..++.+....      -..+..++++.|.+.|..+.++.+++.=...|+=||..+++.+
T Consensus        65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L  144 (429)
T PF10037_consen   65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL  144 (429)
T ss_pred             cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence            3334444555555555555555555555431      1234456777777777777777777777777777777777777


Q ss_pred             HHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhC
Q 037816          365 LGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKC  406 (648)
Q Consensus       365 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~  406 (648)
                      |..+.+.|++..|.++...|...+...++.++..-+.+|.+.
T Consensus       145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            777777777777777777777666556666655555444443

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.20  E-value=0.0042  Score=61.89  Aligned_cols=118  Identities=8%  Similarity=-0.061  Sum_probs=93.8

Q ss_pred             CCChhHHHHHHHHhHhcCChhHHHHHhcccCC-C-----CcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHH
Q 037816          188 EEEVTVGNALITSYFKCGSSSSGRKVFGEMRV-R-----NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYL  261 (648)
Q Consensus       188 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~  261 (648)
                      +.+......+++.+....+++.+..++-+... |     -..|.+++|+.|.+.|..++++++++.=..-|+-||..|++
T Consensus        63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n  142 (429)
T PF10037_consen   63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN  142 (429)
T ss_pred             CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence            44555666677777777777778777766642 2     23466799999999999999999999999999999999999


Q ss_pred             HHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhc
Q 037816          262 SSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKC  305 (648)
Q Consensus       262 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  305 (648)
                      .+|..+.+.|++..|.++..+|...+...+..++..-+.+|.+.
T Consensus       143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            99999999999999999999998888777777666555555554

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.19  E-value=0.27  Score=48.36  Aligned_cols=248  Identities=13%  Similarity=0.043  Sum_probs=138.9

Q ss_pred             HHhcCCChhHHHHhhccCCCC---C------cccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHH--h
Q 037816           98 FYLKCDQMRNAVKLFDDMPMR---D------TVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSA--C  166 (648)
Q Consensus        98 ~~~~~g~~~~A~~~~~~~~~~---~------~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~--~  166 (648)
                      .+-+.+++.+|.++|.++-..   +      ...-+.++++|... +.+.....+....+..  | .. .|..+..+  +
T Consensus        15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~--~-~s-~~l~LF~~L~~   89 (549)
T PF07079_consen   15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQF--G-KS-AYLPLFKALVA   89 (549)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhc--C-Cc-hHHHHHHHHHH
Confidence            355678999999999888622   2      22345667777654 4444444444444432  4 23 56666665  4


Q ss_pred             hccCChHHHHHHHHHHHHh--CCC------------CChhHHHHHHHHhHhcCChhHHHHHhcccCC--------CCccc
Q 037816          167 DRSELSLVSKMIHCLVYLC--GYE------------EEVTVGNALITSYFKCGSSSSGRKVFGEMRV--------RNVIT  224 (648)
Q Consensus       167 ~~~~~~~~a~~~~~~~~~~--~~~------------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~  224 (648)
                      -+.+....|.+.+......  +..            +|...-+..++.+...|++.+++.+++++..        -+..+
T Consensus        90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~  169 (549)
T PF07079_consen   90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM  169 (549)
T ss_pred             HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence            5677788887777666554  222            2333346777888899999999999988862        26777


Q ss_pred             HHHHHHHHHHC--------CCc-------hHHHHHHHHHHhC------CCCCChhhHHHHHHHhhcc--CChHHHHHHHH
Q 037816          225 WTAVISGLVQN--------QLY-------EEGLKLFVKMHLG------LINPNSLTYLSSVMACSGL--QALCEGRQIHG  281 (648)
Q Consensus       225 ~~~li~~~~~~--------g~~-------~~a~~~~~~m~~~------~~~p~~~t~~~ll~~~~~~--~~~~~a~~~~~  281 (648)
                      ||.++-.+.+.        ...       +-++-..++|...      .+.|....+..++....-.  ..+.--.+++.
T Consensus       170 yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~  249 (549)
T PF07079_consen  170 YDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILE  249 (549)
T ss_pred             HHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHH
Confidence            88744433322        122       2233333333221      2334444444444433222  22233334444


Q ss_pred             HHHHhcCCCchh-HHHHHHHHHHhcCCHHHHHHHHHhccC--------CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 037816          282 ILWKLALQSDLC-IESALMDMYSKCGSVEDAWQIFEFAEE--------LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKA  352 (648)
Q Consensus       282 ~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  352 (648)
                      .-...-+.|+-. +...|...+.+  +.+++..+-+.+..        .=+.++..++....+.++...|-+.+.-+.-.
T Consensus       250 ~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l  327 (549)
T PF07079_consen  250 NWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL  327 (549)
T ss_pred             HHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence            444444555533 33444444444  44444444333322        23456777888888888888888888776553

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.19  E-value=0.072  Score=52.12  Aligned_cols=161  Identities=22%  Similarity=0.171  Sum_probs=97.7

Q ss_pred             HHHHHHHhCCCHHHHHHHHhhcCCC-------ChhHHHHHHHHHHH---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037816          398 GLINMYSKCGDLEDSIKVFSRMAPR-------NSVSWNSMIAAFAR---HGNGFKALELYEEMKLEGVEPTDVTFLSLLH  467 (648)
Q Consensus       398 ~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~  467 (648)
                      .++-+|....+++...++.+.+...       ....-....-++.+   .|+.++|+.++..+....-.+++.+|..+..
T Consensus       146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR  225 (374)
T PF13281_consen  146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR  225 (374)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence            3444566666777777777666532       11222233445555   7788888888888665555677777777766


Q ss_pred             HHh----c-----cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCH----HHHHHHH---HhC-------CCC
Q 037816          468 ACS----H-----VGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLL----IEARSFI---ERM-------PVK  524 (648)
Q Consensus       468 ~~~----~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~---~~~-------~~~  524 (648)
                      .|-    .     ....++|...|.+.-+   +.|+...--.++..+...|..    .+..++-   ...       .-.
T Consensus       226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~  302 (374)
T PF13281_consen  226 IYKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM  302 (374)
T ss_pred             HHHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence            542    1     2246778888887744   456544433333344444431    1222222   111       123


Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 037816          525 PDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSP  561 (648)
Q Consensus       525 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~  561 (648)
                      .|-..+.+++.++.-.|++++|.+.++++.++.|+..
T Consensus       303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W  339 (374)
T PF13281_consen  303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW  339 (374)
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence            4566667888889999999999999999999987753

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.18  E-value=0.0035  Score=58.87  Aligned_cols=84  Identities=13%  Similarity=0.049  Sum_probs=42.3

Q ss_pred             hhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC---ccHHHHHHHHHhcCCh
Q 037816          506 GRAGLLIEARSFIERM-PVKPD----VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSP---APYILMANIYSCSGRW  577 (648)
Q Consensus       506 ~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~  577 (648)
                      .+.|++++|...|+.+ ...|+    +..+..+..+|...|+++.|...|+++++..|+++   .++..++.++...|++
T Consensus       154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~  233 (263)
T PRK10803        154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT  233 (263)
T ss_pred             HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence            3344555555544444 22222    12344455555555666666666666655554432   3334445555556666


Q ss_pred             HHHHHHHHHHHh
Q 037816          578 KERAKAIKRMKE  589 (648)
Q Consensus       578 ~~A~~~~~~m~~  589 (648)
                      ++|..+++++.+
T Consensus       234 ~~A~~~~~~vi~  245 (263)
T PRK10803        234 AKAKAVYQQVIK  245 (263)
T ss_pred             HHHHHHHHHHHH
Confidence            666666665544

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.18  E-value=0.38  Score=49.82  Aligned_cols=173  Identities=9%  Similarity=-0.004  Sum_probs=91.8

Q ss_pred             CCcHhHHHHHHHHhhccCChHHHHHHHHHHHH-hCCC--------CChhHHHHHHHHhHhcCChhHHHHHhcccCCCCcc
Q 037816          153 QLDQASFTIILSACDRSELSLVSKMIHCLVYL-CGYE--------EEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVI  223 (648)
Q Consensus       153 p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~  223 (648)
                      |... .|..|.......-.++.|+..|-.... .|++        .+...-.+=+.+  --|++++|++++-++..+|. 
T Consensus       690 PHpr-LWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrDL-  765 (1189)
T KOG2041|consen  690 PHPR-LWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRDL-  765 (1189)
T ss_pred             CchH-HHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhhh-
Confidence            6555 777776666555556666555433221 1111        111111111222  24788888888888776653 


Q ss_pred             cHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCC----hhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHH
Q 037816          224 TWTAVISGLVQNQLYEEGLKLFVKMHLGLINPN----SLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALM  299 (648)
Q Consensus       224 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  299 (648)
                          .|..+.+.|+|-...++++.-   |-..|    ...++.+...++....++.|.+.+..-...         ...+
T Consensus       766 ----Aielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~  829 (1189)
T KOG2041|consen  766 ----AIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQI  829 (1189)
T ss_pred             ----hHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHH
Confidence                355666777777776666432   11111    235666666666666666666666543221         2345


Q ss_pred             HHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHHcCCHHHHHHHH
Q 037816          300 DMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLF  346 (648)
Q Consensus       300 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~  346 (648)
                      .++.+...+++-+.+-..+++ +......+...+...|.-++|.+.|
T Consensus       830 ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~  875 (1189)
T KOG2041|consen  830 ECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAY  875 (1189)
T ss_pred             HHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHH
Confidence            555555555555555555544 3333444555556666666555544

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.18  E-value=0.0022  Score=61.29  Aligned_cols=130  Identities=7%  Similarity=-0.030  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHhH---HhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhC-------CCC-CCH
Q 037816          460 VTFLSLLHACSHVGLVNKGMEFLKSMT---EVHRISP-RAEHYACVVDMVGRAGLLIEARSFIERM-------PVK-PDV  527 (648)
Q Consensus       460 ~~~~~ll~~~~~~g~~~~A~~~~~~~~---~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~-p~~  527 (648)
                      ..|..|.+.|.-.|+++.|+...+.-.   +.+|-.. ....+..+..++.-.|+++.|.+.|+..       +.+ ...
T Consensus       196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA  275 (639)
T KOG1130|consen  196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA  275 (639)
T ss_pred             chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence            356677777778899999987655422   2234333 4567788899999999999999998865       222 234


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHh----cC--CCCCccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037816          528 LVWQALLGACSIHGDSEMGKYAAEKLFL----AQ--PDSPAPYILMANIYSCSGRWKERAKAIKRMKE  589 (648)
Q Consensus       528 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  589 (648)
                      .+.-+|.++|.-..++++|+.++.+-+.    ++  -....++.+++.++...|..++|..+.+.-++
T Consensus       276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~  343 (639)
T KOG1130|consen  276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR  343 (639)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            5566788888888899999998887653    22  23457899999999999999999988776554

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.16  E-value=0.0086  Score=52.61  Aligned_cols=97  Identities=13%  Similarity=0.084  Sum_probs=43.0

Q ss_pred             HHHHHHHhccCcHHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHH
Q 037816          463 LSLLHACSHVGLVNKGMEFLKSMTEVHRISP--RAEHYACVVDMVGRAGLLIEARSFIERM-PVKPD-VLVWQALLGACS  538 (648)
Q Consensus       463 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~  538 (648)
                      ..+...+...|++++|...|++.... ...+  ...++..+...|...|++++|+..+++. .+.|+ ..++..+...+.
T Consensus        39 ~~~g~~~~~~g~~~~A~~~~~~al~l-~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~  117 (168)
T CHL00033         39 YRDGMSAQSEGEYAEALQNYYEAMRL-EIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICH  117 (168)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhc-cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence            33333344444555555555444432 1111  1224444445555555555555555444 22222 233333333333


Q ss_pred             -------HcCChH-------HHHHHHHHHHhcCCCC
Q 037816          539 -------IHGDSE-------MGKYAAEKLFLAQPDS  560 (648)
Q Consensus       539 -------~~g~~~-------~A~~~~~~~~~~~p~~  560 (648)
                             ..|+++       +|..+++++.+..|++
T Consensus       118 ~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~  153 (168)
T CHL00033        118 YRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN  153 (168)
T ss_pred             HhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence                   555655       4445555556666654

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.15  E-value=0.0005  Score=49.69  Aligned_cols=59  Identities=20%  Similarity=0.256  Sum_probs=34.8

Q ss_pred             ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHHHH
Q 037816          471 HVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPDVLVWQ  531 (648)
Q Consensus       471 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~  531 (648)
                      ..|++++|.++|+++.+.  .+-+...+..++.+|.+.|++++|.++++++ ...|+...|.
T Consensus         3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~   62 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ   62 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred             hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence            456666777777766653  2335566666666666666666666666666 4445544333

...

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.06  E-value=0.00048  Score=41.33  Aligned_cols=33  Identities=24%  Similarity=0.418  Sum_probs=30.9

Q ss_pred             HHHHHhcCCCCCccHHHHHHHHHhcCChHHHHH
Q 037816          550 AEKLFLAQPDSPAPYILMANIYSCSGRWKERAK  582 (648)
Q Consensus       550 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~  582 (648)
                      ++++++.+|+++.+|..++.+|...|++++|++
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            688999999999999999999999999999863

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.04  E-value=0.56  Score=49.19  Aligned_cols=111  Identities=14%  Similarity=0.170  Sum_probs=77.6

Q ss_pred             hHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 037816          394 FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVG  473 (648)
Q Consensus       394 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g  473 (648)
                      .+.+--+.-+...|+..+|.++-.+.+-||-..|-.-+.+++..+++++-+++-+.+.      .+.-|..++.+|.+.|
T Consensus       685 lSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~  758 (829)
T KOG2280|consen  685 LSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQG  758 (829)
T ss_pred             CcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcc
Confidence            3444445556677888888888888888888888888888888888877665554432      2455777788888888


Q ss_pred             cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHh
Q 037816          474 LVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIER  520 (648)
Q Consensus       474 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  520 (648)
                      +.++|..++-+...   ..       -.+.+|.+.|++.+|.++--+
T Consensus       759 n~~EA~KYiprv~~---l~-------ekv~ay~~~~~~~eAad~A~~  795 (829)
T KOG2280|consen  759 NKDEAKKYIPRVGG---LQ-------EKVKAYLRVGDVKEAADLAAE  795 (829)
T ss_pred             cHHHHhhhhhccCC---hH-------HHHHHHHHhccHHHHHHHHHH
Confidence            88888887776622   11       456777888888777765433

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.02  E-value=0.12  Score=48.24  Aligned_cols=54  Identities=9%  Similarity=0.031  Sum_probs=28.7

Q ss_pred             HHHHhcCCHHHHHHHHHhccCCCccc---H---HHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 037816          300 DMYSKCGSVEDAWQIFEFAEELDGVS---M---TVILVGFAQNGFEEEAMQLFVKMVKAG  353 (648)
Q Consensus       300 ~~~~~~~~~~~A~~~~~~~~~~~~~~---~---~~li~~~~~~~~~~~a~~~~~~m~~~~  353 (648)
                      ..+...|++++|.+.|+.+....+.+   .   -.++.++.+.+++++|...+++..+..
T Consensus        40 ~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~   99 (243)
T PRK10866         40 QQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN   99 (243)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence            33445566666666666655421111   1   123445566666666666666666543

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.02  E-value=0.0031  Score=62.18  Aligned_cols=65  Identities=12%  Similarity=-0.043  Sum_probs=48.9

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc---cHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816          526 DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPA---PYILMANIYSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       526 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~  590 (648)
                      +...|+.+..+|...|++++|+..++++++++|++..   +|+.++.+|...|++++|++.+++..+.
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4666777777777777777777777777777777764   3777777777777777777777777764

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.01  E-value=0.18  Score=43.18  Aligned_cols=133  Identities=12%  Similarity=0.044  Sum_probs=95.3

Q ss_pred             CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 037816          422 RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV  501 (648)
Q Consensus       422 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l  501 (648)
                      |++..-..|..++...|+..+|...|++...--+.-|......+.++....+++..|...++++.+..--.-++.....+
T Consensus        87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~  166 (251)
T COG4700          87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF  166 (251)
T ss_pred             hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence            34444456778888889999999999888764344577778888888888999999999999887641111156667778


Q ss_pred             HHHhhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 037816          502 VDMVGRAGLLIEARSFIERM-PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLF  554 (648)
Q Consensus       502 ~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  554 (648)
                      .+.|...|+.++|+.-|+.. ..-|+...-......+.+.|+..+|..-+..+.
T Consensus       167 aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~  220 (251)
T COG4700         167 ARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVV  220 (251)
T ss_pred             HHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence            88899999999998888877 555665554445555677787666665444443

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.01  E-value=0.36  Score=46.48  Aligned_cols=94  Identities=16%  Similarity=0.162  Sum_probs=54.6

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHcCCC-----CCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhc-CCCCC--hhHH
Q 037816          428 NSMIAAFARHGNGFKALELYEEMKLEGVE-----PTDV-TFLSLLHACSHVGLVNKGMEFLKSMTEVH-RISPR--AEHY  498 (648)
Q Consensus       428 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~-----p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-~~~~~--~~~~  498 (648)
                      ..+...+.+.|++++|.++|++....-..     .+.. .|...+-++...|++..|.+.+++..... ++..+  ..+.
T Consensus       159 ~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~  238 (282)
T PF14938_consen  159 LKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFL  238 (282)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHH
Confidence            34566677788888888888877654221     1221 22233335566788888888888876431 22222  3345


Q ss_pred             HHHHHHhhh--cCCHHHHHHHHHhC
Q 037816          499 ACVVDMVGR--AGLLIEARSFIERM  521 (648)
Q Consensus       499 ~~l~~~~~~--~g~~~~A~~~~~~~  521 (648)
                      ..|+.++-.  ...+++|..-|+.+
T Consensus       239 ~~l~~A~~~~D~e~f~~av~~~d~~  263 (282)
T PF14938_consen  239 EDLLEAYEEGDVEAFTEAVAEYDSI  263 (282)
T ss_dssp             HHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHccc
Confidence            566666654  34577777777777

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=96.98  E-value=0.026  Score=45.65  Aligned_cols=92  Identities=15%  Similarity=0.156  Sum_probs=61.4

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHhh
Q 037816          430 MIAAFARHGNGFKALELYEEMKLEGVEPT--DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP-RAEHYACVVDMVG  506 (648)
Q Consensus       430 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~  506 (648)
                      +..++-..|+.++|+.+|++....|....  ...+..+...+...|++++|..++++....+.-.+ +......+.-++.
T Consensus         7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~   86 (120)
T PF12688_consen    7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY   86 (120)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence            44566678888888888888888775544  23555666778888888888888888876421111 2233333445667


Q ss_pred             hcCCHHHHHHHHHhC
Q 037816          507 RAGLLIEARSFIERM  521 (648)
Q Consensus       507 ~~g~~~~A~~~~~~~  521 (648)
                      ..|+.++|++.+-..
T Consensus        87 ~~gr~~eAl~~~l~~  101 (120)
T PF12688_consen   87 NLGRPKEALEWLLEA  101 (120)
T ss_pred             HCCCHHHHHHHHHHH
Confidence            778888888766443

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.91  E-value=0.059  Score=52.03  Aligned_cols=162  Identities=17%  Similarity=0.050  Sum_probs=102.1

Q ss_pred             HHHhCCCHHHHHHHHhhcCCCCh-hHHHHHHHH--HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH-------------
Q 037816          402 MYSKCGDLEDSIKVFSRMAPRNS-VSWNSMIAA--FARHGNGFKALELYEEMKLEGVEPTDVTFLSL-------------  465 (648)
Q Consensus       402 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~l~~~--~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l-------------  465 (648)
                      ++.-.|+.++|.+.-..+.+-|. ..+...+++  +-..++.+.|...|++.+..+  |+...-...             
T Consensus       178 cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~  255 (486)
T KOG0550|consen  178 CLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKER  255 (486)
T ss_pred             hhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhh
Confidence            44556677777666555544332 233333333  334667778888888777644  655432221             


Q ss_pred             HHHHhccCcHHHHHHHHHHhHHh--cCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHH---HHHHHc
Q 037816          466 LHACSHVGLVNKGMEFLKSMTEV--HRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALL---GACSIH  540 (648)
Q Consensus       466 l~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~---~~~~~~  540 (648)
                      .+-..+.|++..|.+.|.+.+..  .+..|+...|........+.|+..+|+.-.+.. ...|+.....++   .++...
T Consensus       256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~A-l~iD~syikall~ra~c~l~l  334 (486)
T KOG0550|consen  256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEA-LKIDSSYIKALLRRANCHLAL  334 (486)
T ss_pred             hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhh-hhcCHHHHHHHHHHHHHHHHH
Confidence            12345778999999999998642  123345667777888888999999999988887 233333333332   446677


Q ss_pred             CChHHHHHHHHHHHhcCCCCCccHHHH
Q 037816          541 GDSEMGKYAAEKLFLAQPDSPAPYILM  567 (648)
Q Consensus       541 g~~~~A~~~~~~~~~~~p~~~~~~~~l  567 (648)
                      ++++.|++.++++.+.... ......+
T Consensus       335 e~~e~AV~d~~~a~q~~~s-~e~r~~l  360 (486)
T KOG0550|consen  335 EKWEEAVEDYEKAMQLEKD-CEIRRTL  360 (486)
T ss_pred             HHHHHHHHHHHHHHhhccc-cchHHHH
Confidence            8999999999999876654 3333333

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.88  E-value=0.015  Score=56.18  Aligned_cols=63  Identities=6%  Similarity=0.047  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037816          527 VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKE  589 (648)
Q Consensus       527 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  589 (648)
                      ..++..|..+|.+.+++..|+...+++++.+|+|..+.+.-+.+|...|+++.|+..|+++++
T Consensus       257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k  319 (397)
T KOG0543|consen  257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK  319 (397)
T ss_pred             HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            345666777778888888888888888888888888888888888888888888888888876

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.84  E-value=0.066  Score=48.44  Aligned_cols=131  Identities=8%  Similarity=0.026  Sum_probs=79.0

Q ss_pred             HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC--------CCCCCHHHHHHHH
Q 037816          463 LSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM--------PVKPDVLVWQALL  534 (648)
Q Consensus       463 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~~~~~~~l~  534 (648)
                      +.++..+.-.|.+.-....+.+.++. ..+.++.....|+..-...|+.+.|...|++.        ++.-.........
T Consensus       181 y~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a  259 (366)
T KOG2796|consen  181 YSMANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA  259 (366)
T ss_pred             HHHHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence            34455555556666666666666653 33445666666666666666666666666643        1111222222222


Q ss_pred             HHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 037816          535 GACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDK  594 (648)
Q Consensus       535 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~  594 (648)
                      ..|.-++++..|...+.++.+.+|.++...+.-+-++.-.|+..+|++.++.|+..-..|
T Consensus       260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence            335556677777777777777777777777776666677777777777777777654333

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.81  E-value=0.022  Score=53.64  Aligned_cols=101  Identities=8%  Similarity=0.031  Sum_probs=65.8

Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHH
Q 037816          461 TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP-RAEHYACVVDMVGRAGLLIEARSFIERM-PVKPD----VLVWQALL  534 (648)
Q Consensus       461 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~  534 (648)
                      .|...+....+.|++++|...|+.+.+.+.-.+ .+..+-.+...|...|++++|...|+.+ ...|+    ...+..+.
T Consensus       145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg  224 (263)
T PRK10803        145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG  224 (263)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence            344444444556777777777777776421111 1245666777777777777777777776 22232    44455556


Q ss_pred             HHHHHcCChHHHHHHHHHHHhcCCCCC
Q 037816          535 GACSIHGDSEMGKYAAEKLFLAQPDSP  561 (648)
Q Consensus       535 ~~~~~~g~~~~A~~~~~~~~~~~p~~~  561 (648)
                      .++...|+.+.|...++++++..|++.
T Consensus       225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~  251 (263)
T PRK10803        225 VIMQDKGDTAKAKAVYQQVIKKYPGTD  251 (263)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence            677788899999999999888888764

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.77  E-value=0.0023  Score=41.30  Aligned_cols=42  Identities=21%  Similarity=0.388  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHH
Q 037816          528 LVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMAN  569 (648)
Q Consensus       528 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~  569 (648)
                      .++..+..+|...|++++|++.++++++..|+++.++..++.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            357778899999999999999999999999999988887764

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.76  E-value=0.0023  Score=47.73  Aligned_cols=63  Identities=13%  Similarity=0.083  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CC-C---CCccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037816          527 VLVWQALLGACSIHGDSEMGKYAAEKLFLA---QP-D---SPAPYILMANIYSCSGRWKERAKAIKRMKE  589 (648)
Q Consensus       527 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p-~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  589 (648)
                      ..+++.+...|...|++++|+..++++++.   .+ +   -..++..++.++...|++++|++++++..+
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            346778888888999999999999988753   22 2   246788899999999999999999988754

...

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.75  E-value=0.029  Score=47.85  Aligned_cols=113  Identities=16%  Similarity=0.227  Sum_probs=72.1

Q ss_pred             hccCcHHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 037816          470 SHVGLVNKGMEFLKSMTEVHRISP--RAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGK  547 (648)
Q Consensus       470 ~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~  547 (648)
                      ...++.+.+...+.++...+.-++  +...          ..-.....+.++..    -......++..+...|+++.|+
T Consensus        17 ~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~----~~~~~~~l~~~~~~~~~~~~a~   82 (146)
T PF03704_consen   17 ARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLREL----YLDALERLAEALLEAGDYEEAL   82 (146)
T ss_dssp             HHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHH----HHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHH----HHHHHHHHHHHHHhccCHHHHH
Confidence            455677777777777765432111  1111          11122222233332    1334566777788999999999


Q ss_pred             HHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCC
Q 037816          548 YAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKE-----MGVDKET  596 (648)
Q Consensus       548 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~  596 (648)
                      ..+++++..+|-+...|..++.+|...|+..+|.+.|+++.+     .|+.|++
T Consensus        83 ~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~  136 (146)
T PF03704_consen   83 RLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP  136 (146)
T ss_dssp             HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence            999999999999999999999999999999999999999853     4776664

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=96.73  E-value=0.017  Score=50.96  Aligned_cols=88  Identities=18%  Similarity=0.202  Sum_probs=67.4

Q ss_pred             CCcccHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccC----------------ChhHHHH
Q 037816          321 LDGVSMTVILVGFAQ-----NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDT----------------SLGLGKQ  379 (648)
Q Consensus       321 ~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----------------~~~~a~~  379 (648)
                      .+-.+|..++..|.+     .|..+=....++.|.+-|+.-|..+|+.||+.+=+..                +-+.|..
T Consensus        45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~  124 (228)
T PF06239_consen   45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID  124 (228)
T ss_pred             ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence            455555566665554     3666777778888999999999999999998875432                3567888


Q ss_pred             HHHHHHHhCCCCchhHHHHHHHHHHhCCC
Q 037816          380 IHSLIIKSDFTSNPFVNNGLINMYSKCGD  408 (648)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~  408 (648)
                      ++++|...|+-||..++..|++.+++.+.
T Consensus       125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  125 LLEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             HHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence            99999999999999999999888876654

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=96.73  E-value=0.011  Score=52.02  Aligned_cols=97  Identities=12%  Similarity=0.167  Sum_probs=74.3

Q ss_pred             HHhhccC--CCCCcccHHHHHHHHHh-----cCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccC-----------
Q 037816          109 VKLFDDM--PMRDTVSWNTMVSGFLR-----NGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSE-----------  170 (648)
Q Consensus       109 ~~~~~~~--~~~~~~~y~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~-----------  170 (648)
                      ...|+..  ...+..+|..++..|.+     .|..+=....+..|.+.|+.-|-. +|+.||..+=+..           
T Consensus        34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~-~Y~~LLDvFPKg~fvp~n~fQ~~F  112 (228)
T PF06239_consen   34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLE-VYKALLDVFPKGKFVPRNFFQAEF  112 (228)
T ss_pred             HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHH-HHHHHHHhCCCCCcccccHHHHHh
Confidence            3455555  35677888888888765     467777888889999999988888 9999999875432           


Q ss_pred             -----ChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCC
Q 037816          171 -----LSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS  206 (648)
Q Consensus       171 -----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  206 (648)
                           +.+-+..++++|...|+-||.+++..|++.+.+.+.
T Consensus       113 ~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  113 MHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             ccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence                 456678888888888888888888888888866554

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=96.72  E-value=0.061  Score=50.11  Aligned_cols=104  Identities=13%  Similarity=0.104  Sum_probs=83.4

Q ss_pred             CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcC---CHHHHHHHHHhC-CCCCC-HHHH
Q 037816          456 EPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG---LLIEARSFIERM-PVKPD-VLVW  530 (648)
Q Consensus       456 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p~-~~~~  530 (648)
                      +-|...|..|...|...|+++.|...|....+.  -.+++..+..+..++....   .-.++.++|+++ ..+|+ +...
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral  230 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL  230 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence            447889999999999999999999999999873  4457777777777765443   467888899988 55664 5566


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 037816          531 QALLGACSIHGDSEMGKYAAEKLFLAQPDSP  561 (648)
Q Consensus       531 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~  561 (648)
                      ..|...+...|++.+|...++.+++..|++.
T Consensus       231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~  261 (287)
T COG4235         231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADD  261 (287)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence            6677789999999999999999999998874

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.68  E-value=0.062  Score=54.76  Aligned_cols=97  Identities=11%  Similarity=0.085  Sum_probs=54.1

Q ss_pred             hhHhhHhHHhhccccCCCccCCCCcCCCcchHHHHHHHHhccCCCcchhHHHHHHhhh-----cCCCCCcCcCCCCChHH
Q 037816           16 FCSSLVSPFITKIIQDPTSSTSKLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKT-----FEPFDNQNVYNVPNATV   90 (648)
Q Consensus        16 ~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~~~   90 (648)
                      .|.+=+..|..+|.++++.+..++-. ....+..+.......=+++-|+..|-.....     +..+++|.+.|-.|+..
T Consensus       558 p~~~~m~q~Ieag~f~ea~~iaclgV-v~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~i  636 (1081)
T KOG1538|consen  558 PQSAPMYQYIERGLFKEAYQIACLGV-TDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDL  636 (1081)
T ss_pred             cccccchhhhhccchhhhhcccccce-ecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHH
Confidence            34444556777788888877665544 3344555555555555666666655443321     11124455555556654


Q ss_pred             HHHHHHHHHhcCCChhHHHHhhccCC
Q 037816           91 IWNSLLSFYLKCDQMRNAVKLFDDMP  116 (648)
Q Consensus        91 ~~~~li~~~~~~g~~~~A~~~~~~~~  116 (648)
                      .   +...++-.|.+.+|-++|.+-.
T Consensus       637 L---lA~~~Ay~gKF~EAAklFk~~G  659 (1081)
T KOG1538|consen  637 L---LADVFAYQGKFHEAAKLFKRSG  659 (1081)
T ss_pred             H---HHHHHHhhhhHHHHHHHHHHcC
Confidence            3   2344566677777777776544

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=96.67  E-value=0.2  Score=40.31  Aligned_cols=141  Identities=15%  Similarity=0.101  Sum_probs=94.3

Q ss_pred             HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHH
Q 037816          434 FARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIE  513 (648)
Q Consensus       434 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  513 (648)
                      +.-.|..++..++..+....   .+..-++.+|--....-+-+-..++++.+-+-+.+              ..+|++..
T Consensus        12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDi--------------s~C~NlKr   74 (161)
T PF09205_consen   12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDI--------------SKCGNLKR   74 (161)
T ss_dssp             HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-G--------------GG-S-THH
T ss_pred             HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------hhhcchHH
Confidence            34468888888888888763   35666777776666677777778888887553322              23455555


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 037816          514 ARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVD  593 (648)
Q Consensus       514 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~  593 (648)
                      ....+-.++  .+.......+.+...+|.-+.-.+++..+.+.+..+|.+...++.+|.+.|+..++-+++++..+.|+.
T Consensus        75 Vi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k  152 (161)
T PF09205_consen   75 VIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK  152 (161)
T ss_dssp             HHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred             HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence            555555552  345556777888899999999999999988777778899999999999999999999999999999863

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.60  E-value=1.2  Score=46.47  Aligned_cols=29  Identities=7%  Similarity=-0.079  Sum_probs=14.6

Q ss_pred             CCChhHHHHHHHHhHhcCChhHHHHHhcc
Q 037816          188 EEEVTVGNALITSYFKCGSSSSGRKVFGE  216 (648)
Q Consensus       188 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~  216 (648)
                      .|-+..|..|.......-.++-|+..|-+
T Consensus       689 nPHprLWrllAe~Al~Kl~l~tAE~AFVr  717 (1189)
T KOG2041|consen  689 NPHPRLWRLLAEYALFKLALDTAEHAFVR  717 (1189)
T ss_pred             CCchHHHHHHHHHHHHHHhhhhHhhhhhh
Confidence            34555555555555444455555544433

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.57  E-value=0.0084  Score=43.92  Aligned_cols=63  Identities=21%  Similarity=0.209  Sum_probs=47.8

Q ss_pred             HHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHH
Q 037816          503 DMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYI  565 (648)
Q Consensus       503 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~  565 (648)
                      ..|.+.+++++|.++++++ ...| ++..|.....++...|++++|.+.++++++..|+++....
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~   67 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA   67 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence            4677788888888888887 4445 4555677777888888888888888888888887754443

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.45  E-value=0.29  Score=44.49  Aligned_cols=135  Identities=10%  Similarity=0.013  Sum_probs=101.0

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHH-----
Q 037816          425 VSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA-----  499 (648)
Q Consensus       425 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-----  499 (648)
                      ...+.++.++.-.|.+.-.+..+++.++...+-++.....|.+.-.+.|+.+.|...|+...+. .-..+....+     
T Consensus       178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~  256 (366)
T KOG2796|consen  178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLM  256 (366)
T ss_pred             HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHh
Confidence            3456677778888899999999999998765567788888999999999999999999977654 3333333333     


Q ss_pred             HHHHHhhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 037816          500 CVVDMVGRAGLLIEARSFIERMPV--KPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS  560 (648)
Q Consensus       500 ~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~  560 (648)
                      .....|.-..++..|...+.++..  ..|+...|.-.-+..-.|+...|++.++.+.+..|..
T Consensus       257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence            333456677889999999988822  2345555555555666789999999999999988874

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.42  E-value=0.15  Score=46.32  Aligned_cols=141  Identities=16%  Similarity=0.131  Sum_probs=70.6

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhh
Q 037816          430 MIAAFARHGNGFKALELYEEMKLEGVE-P-TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR  507 (648)
Q Consensus       430 l~~~~~~~~~~~~A~~~~~~m~~~~~~-p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  507 (648)
                      ....+...|++++|...|+++...-.. | -......++.++.+.|+++.|...++...+.+.-.|.. -+...+.+.+.
T Consensus        11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~-~~A~Y~~g~~~   89 (203)
T PF13525_consen   11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA-DYALYMLGLSY   89 (203)
T ss_dssp             HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH-HHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch-hhHHHHHHHHH
Confidence            334455566666666666666654211 1 12334455566666666666666666666543222211 11111111111


Q ss_pred             cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcc-----------------HHHHHHH
Q 037816          508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP-----------------YILMANI  570 (648)
Q Consensus       508 ~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----------------~~~l~~~  570 (648)
                      ........                   ....+.+...+|...++.+++..|+++.+                 -..++..
T Consensus        90 ~~~~~~~~-------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~  150 (203)
T PF13525_consen   90 YKQIPGIL-------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARF  150 (203)
T ss_dssp             HHHHHHHH--------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCccch-------------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00000000                   01122234556677777777777776532                 1246778


Q ss_pred             HHhcCChHHHHHHHHHHHhC
Q 037816          571 YSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       571 ~~~~g~~~~A~~~~~~m~~~  590 (648)
                      |.+.|.+..|..-++.+.+.
T Consensus       151 Y~~~~~y~aA~~r~~~v~~~  170 (203)
T PF13525_consen  151 YYKRGKYKAAIIRFQYVIEN  170 (203)
T ss_dssp             HHCTT-HHHHHHHHHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHHH
Confidence            99999999999999999874

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.42  E-value=1.6  Score=46.04  Aligned_cols=327  Identities=13%  Similarity=0.113  Sum_probs=186.0

Q ss_pred             HHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCC---hHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 037816          226 TAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQA---LCEGRQIHGILWKLALQSDLCIESALMDMY  302 (648)
Q Consensus       226 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  302 (648)
                      ..+|+-+...+.+..|+++-+.+...-... ...|.....-..+..+   -+.+..+-+.+.. .. .+...|.....-.
T Consensus       441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~-~~-~~~iSy~~iA~~A  517 (829)
T KOG2280|consen  441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA-KL-TPGISYAAIARRA  517 (829)
T ss_pred             hhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcc-cC-CCceeHHHHHHHH
Confidence            456777888888999998888875422222 4556555555554432   2222222222222 12 3344566677777


Q ss_pred             HhcCCHHHHHHHHHhccCC--------CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCCh
Q 037816          303 SKCGSVEDAWQIFEFAEEL--------DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSL  374 (648)
Q Consensus       303 ~~~~~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~  374 (648)
                      ..+|+++-|..+++.=...        +...+...+.-..+.|+.+-...++-.+...   .+...|...+      .+.
T Consensus       518 y~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~l------~~~  588 (829)
T KOG2280|consen  518 YQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMTL------RNQ  588 (829)
T ss_pred             HhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHHH------Hhc
Confidence            7889999998888654331        2333455566666777777776666666543   1112222221      133


Q ss_pred             hHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhc------CCCChhHHHHHHHHHHHcCC---------
Q 037816          375 GLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRM------APRNSVSWNSMIAAFARHGN---------  439 (648)
Q Consensus       375 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~------~~~~~~~~~~l~~~~~~~~~---------  439 (648)
                      ..|..+|.+..+..-..      .+-+.|-...+...+-.+.-+-      ..+-.........++.+...         
T Consensus       589 p~a~~lY~~~~r~~~~~------~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~e  662 (829)
T KOG2280|consen  589 PLALSLYRQFMRHQDRA------TLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALE  662 (829)
T ss_pred             hhhhHHHHHHHHhhchh------hhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHH
Confidence            34455555444321111      1111222222222211111111      01111122223333433322         


Q ss_pred             -hHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHH
Q 037816          440 -GFKALELYEEMKL-EGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSF  517 (648)
Q Consensus       440 -~~~A~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  517 (648)
                       ..+-+.+.+.+.. .|..-...+.+--+.-+...|+..+|.++-.+.+     -|+...|..=+.+++..++|++-+++
T Consensus       663 d~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekf  737 (829)
T KOG2280|consen  663 DQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKF  737 (829)
T ss_pred             HHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHH
Confidence             1122222223322 2333444456666777888899999998887773     37999999999999999999999998


Q ss_pred             HHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHH
Q 037816          518 IERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKR  586 (648)
Q Consensus       518 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  586 (648)
                      -+..+   .+.-|.-...+|.+.|+.++|..++-+.-.        +.....+|.+.|++.+|.+.--+
T Consensus       738 Akskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~~  795 (829)
T KOG2280|consen  738 AKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAAE  795 (829)
T ss_pred             HhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHHH
Confidence            88873   144566788899999999999988877522        22677889999999999876444

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=96.35  E-value=1.2  Score=43.92  Aligned_cols=80  Identities=14%  Similarity=0.233  Sum_probs=65.4

Q ss_pred             CChHHHHHHHHHHHhcCCChhHHHHhhccCCCCC---cccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHH
Q 037816           86 PNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRD---TVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII  162 (648)
Q Consensus        86 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~l  162 (648)
                      |.|+..|-.||.-|...|..++..++++.|..|-   ...|..-|++-....++.....+|.+.....+..+--.+|..-
T Consensus        39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ldLW~lYl~Y  118 (660)
T COG5107          39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLDLWMLYLEY  118 (660)
T ss_pred             chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHhHHHHHHHH
Confidence            7789999999999999999999999999999774   4568888888888889999999999998876655544455544


Q ss_pred             HHH
Q 037816          163 LSA  165 (648)
Q Consensus       163 l~~  165 (648)
                      ++-
T Consensus       119 IRr  121 (660)
T COG5107         119 IRR  121 (660)
T ss_pred             HHh
Confidence            444

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.28  E-value=0.067  Score=51.84  Aligned_cols=96  Identities=11%  Similarity=0.032  Sum_probs=79.1

Q ss_pred             hhHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHH
Q 037816          495 AEHYACVVDMVGRAGLLIEARSFIERM-PV-KPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYS  572 (648)
Q Consensus       495 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  572 (648)
                      ..++..|.-+|.+.+++.+|++..++. .. ++|.-..-.-..+|...|+++.|+..|+++++..|.|..+-..++.+-.
T Consensus       257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~  336 (397)
T KOG0543|consen  257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ  336 (397)
T ss_pred             HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            345677888899999999999998887 33 4456666667789999999999999999999999999999999988877


Q ss_pred             hcCChHHH-HHHHHHHHhC
Q 037816          573 CSGRWKER-AKAIKRMKEM  590 (648)
Q Consensus       573 ~~g~~~~A-~~~~~~m~~~  590 (648)
                      +...+.+. .++|..|-..
T Consensus       337 k~~~~~~kekk~y~~mF~k  355 (397)
T KOG0543|consen  337 KIREYEEKEKKMYANMFAK  355 (397)
T ss_pred             HHHHHHHHHHHHHHHHhhc
Confidence            77666655 7888888654

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=96.28  E-value=0.035  Score=53.39  Aligned_cols=129  Identities=12%  Similarity=0.041  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHH----HcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHh----cCCCCChhH
Q 037816          427 WNSMIAAFARHGNGFKALELYEEMK----LEGVEP-TDVTFLSLLHACSHVGLVNKGMEFLKSMTEV----HRISPRAEH  497 (648)
Q Consensus       427 ~~~l~~~~~~~~~~~~A~~~~~~m~----~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~  497 (648)
                      |..|...|.-.|+++.|+..-+.=.    +.|-+. ....+..+.+++.-.|+++.|.+.|+.....    ..-......
T Consensus       198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs  277 (639)
T KOG1130|consen  198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS  277 (639)
T ss_pred             hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence            3334444444556666654433211    122111 1234555666666666666666666654321    011123334


Q ss_pred             HHHHHHHhhhcCCHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 037816          498 YACVVDMVGRAGLLIEARSFIERM--------PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFL  555 (648)
Q Consensus       498 ~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  555 (648)
                      .-+|..+|.-...+++|+.++.+-        ...-....+-+|..+|...|..++|..+.+..++
T Consensus       278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~  343 (639)
T KOG1130|consen  278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR  343 (639)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            445666666666666666665543        1122355666677777777777777776666543

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.26  E-value=0.054  Score=44.28  Aligned_cols=51  Identities=12%  Similarity=0.234  Sum_probs=39.7

Q ss_pred             CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 037816          454 GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDM  504 (648)
Q Consensus       454 ~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~  504 (648)
                      ...|+..+..+++.+|+..|++..|+++++...+.++++.+..+|..|++=
T Consensus        47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W   97 (126)
T PF12921_consen   47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW   97 (126)
T ss_pred             CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            356778888888888888888888888888888877777777777777654

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.23  E-value=0.0076  Score=44.87  Aligned_cols=59  Identities=20%  Similarity=0.126  Sum_probs=35.5

Q ss_pred             HHHHHHHHhhhcCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 037816          497 HYACVVDMVGRAGLLIEARSFIERM-------P-VKPD-VLVWQALLGACSIHGDSEMGKYAAEKLFL  555 (648)
Q Consensus       497 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  555 (648)
                      +++.+...|...|++++|+..|++.       + ..|+ ..++..+..++...|++++|+++++++++
T Consensus         7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            4555555555566655555555544       1 1122 45566777777778888888888777764

...

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.17  E-value=0.28  Score=44.46  Aligned_cols=162  Identities=15%  Similarity=0.134  Sum_probs=90.0

Q ss_pred             HHHHhCCCHHHHHHHHhhcCC--C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhc-
Q 037816          401 NMYSKCGDLEDSIKVFSRMAP--R----NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD--VTFLSLLHACSH-  471 (648)
Q Consensus       401 ~~~~~~g~~~~A~~~~~~~~~--~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~-  471 (648)
                      ..+...|++.+|...|+.+..  |    -....-.++.++.+.|+++.|...++++.+.-  |+.  ..+...+.+.+. 
T Consensus        13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y--P~~~~~~~A~Y~~g~~~~   90 (203)
T PF13525_consen   13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY--PNSPKADYALYMLGLSYY   90 (203)
T ss_dssp             HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCcchhhHHHHHHHHHH
Confidence            345566777777777776652  1    12344456677778888888888888877643  332  122222222211 


Q ss_pred             ------------cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 037816          472 ------------VGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSI  539 (648)
Q Consensus       472 ------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~  539 (648)
                                  .+...+|...|+.+..                .|=......+|...+..+.... ...--.+...|.+
T Consensus        91 ~~~~~~~~~~~D~~~~~~A~~~~~~li~----------------~yP~S~y~~~A~~~l~~l~~~l-a~~e~~ia~~Y~~  153 (203)
T PF13525_consen   91 KQIPGILRSDRDQTSTRKAIEEFEELIK----------------RYPNSEYAEEAKKRLAELRNRL-AEHELYIARFYYK  153 (203)
T ss_dssp             HHHHHHH-TT---HHHHHHHHHHHHHHH----------------H-TTSTTHHHHHHHHHHHHHHH-HHHHHHHHHHHHC
T ss_pred             HhCccchhcccChHHHHHHHHHHHHHHH----------------HCcCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence                        1223344444554444                3444444455554444431000 0111224566888


Q ss_pred             cCChHHHHHHHHHHHhcCCCCC---ccHHHHHHHHHhcCChHHHH
Q 037816          540 HGDSEMGKYAAEKLFLAQPDSP---APYILMANIYSCSGRWKERA  581 (648)
Q Consensus       540 ~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~  581 (648)
                      .|.+..|..-++.+++.-|+.+   .+...++.+|.+.|..+.|.
T Consensus       154 ~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  154 RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence            9999999999999999888864   35667888888888888554

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.09  E-value=0.14  Score=43.62  Aligned_cols=71  Identities=15%  Similarity=0.182  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH----hcCCCCChhH
Q 037816          426 SWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTE----VHRISPRAEH  497 (648)
Q Consensus       426 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~  497 (648)
                      ....++..+...|++++|..+++.+.... +-|...|..+|.++...|+...|.+.|+.+..    ..|+.|+..+
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~  138 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET  138 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence            34445566667777788877777777754 33667777777777777877777777776643    2366665554

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=95.94  E-value=0.7  Score=45.46  Aligned_cols=163  Identities=11%  Similarity=0.079  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHhc---cCcHHHHHHHHHHhHHhcCCCCChhHHHH
Q 037816          427 WNSMIAAFARHGNGFKALELYEEMKLEG---VEPTDVTFLSLLHACSH---VGLVNKGMEFLKSMTEVHRISPRAEHYAC  500 (648)
Q Consensus       427 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~---~~p~~~~~~~ll~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  500 (648)
                      .-.++-+|....+++..+++.+.+...-   +.-....-....-++.+   .|+.++|++++..+... .-.+++.+|..
T Consensus       144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~gL  222 (374)
T PF13281_consen  144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTLGL  222 (374)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHHHH
Confidence            3356667899999999999999998641   11122223344556666   89999999999996654 66788889988


Q ss_pred             HHHHhhh---------cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCC-hH---HHHHHH---HHHH-hc----CC
Q 037816          501 VVDMVGR---------AGLLIEARSFIERM-PVKPDVLVWQALLGACSIHGD-SE---MGKYAA---EKLF-LA----QP  558 (648)
Q Consensus       501 l~~~~~~---------~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~-~~---~A~~~~---~~~~-~~----~p  558 (648)
                      +...|-.         ...+++|...|.+. .+.||..+=-.++..+.-.|. .+   +..++-   ..+. +.    .-
T Consensus       223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~  302 (374)
T PF13281_consen  223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM  302 (374)
T ss_pred             HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence            8877632         23478899999888 666764442222222323332 22   222222   1111 11    12


Q ss_pred             CCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816          559 DSPAPYILMANIYSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       559 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  590 (648)
                      .+-..+..++.++.-.|++++|.+.+++|.+.
T Consensus       303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence            34566778888999999999999999999875

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=95.89  E-value=0.046  Score=54.23  Aligned_cols=63  Identities=10%  Similarity=0.024  Sum_probs=41.7

Q ss_pred             ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 037816          494 RAEHYACVVDMVGRAGLLIEARSFIERM-PVKPDV----LVWQALLGACSIHGDSEMGKYAAEKLFLA  556 (648)
Q Consensus       494 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  556 (648)
                      +...++.+..+|.+.|++++|+..|++. .+.|+.    .+|..+..+|...|+.++|++.++++++.
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4556666666666777777777776664 555653    24666777777777777777777777665

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=95.86  E-value=2.1  Score=42.32  Aligned_cols=127  Identities=14%  Similarity=0.061  Sum_probs=93.0

Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHhHHhcC-CCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHH-HHHHHHHH
Q 037816          461 TFLSLLHACSHVGLVNKGMEFLKSMTEVHR-ISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPDVLV-WQALLGAC  537 (648)
Q Consensus       461 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~~  537 (648)
                      .|...+++..+...++.|..+|-+..+. + +.++..++++++..++ .|+...|-++|+-. ..-||... .+-.+..+
T Consensus       399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL  476 (660)
T COG5107         399 VFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFL  476 (660)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            4556677777777888899999999886 5 6778888888887665 57788888888865 33344443 34556667


Q ss_pred             HHcCChHHHHHHHHHHHhcCCCC--CccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037816          538 SIHGDSEMGKYAAEKLFLAQPDS--PAPYILMANIYSCSGRWKERAKAIKRMKE  589 (648)
Q Consensus       538 ~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  589 (648)
                      ...++-+.|..+|+..++.-..+  ..+|..++.--..-|+...+..+=++|..
T Consensus       477 i~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e  530 (660)
T COG5107         477 IRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE  530 (660)
T ss_pred             HHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence            78888899999999776543333  56888888877788888877777666654

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.83  E-value=0.077  Score=48.81  Aligned_cols=57  Identities=18%  Similarity=0.237  Sum_probs=32.4

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHhcCCCC---CccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037816          533 LLGACSIHGDSEMGKYAAEKLFLAQPDS---PAPYILMANIYSCSGRWKERAKAIKRMKE  589 (648)
Q Consensus       533 l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  589 (648)
                      |..++...|+++.|...|..+.+..|..   +..+.-++.+..+.|+.++|...|+++.+
T Consensus       184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k  243 (262)
T COG1729         184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK  243 (262)
T ss_pred             HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            5555556666666666666655544433   33455555556666666666666666554

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=95.80  E-value=1.5  Score=40.31  Aligned_cols=195  Identities=21%  Similarity=0.182  Sum_probs=105.3

Q ss_pred             hHHHHHHHHHHhCCCHHHHHHHHhhcC-----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH-
Q 037816          394 FVNNGLINMYSKCGDLEDSIKVFSRMA-----PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLH-  467 (648)
Q Consensus       394 ~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~-  467 (648)
                      ..+......+...+.+..+...+....     ......+......+...+++..+...+.........+ ......... 
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  138 (291)
T COG0457          60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG  138 (291)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence            444445555555555555555554432     1233344444555555566666666666666533222 111111222 


Q ss_pred             HHhccCcHHHHHHHHHHhHHhcCC--CCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHHcCC
Q 037816          468 ACSHVGLVNKGMEFLKSMTEVHRI--SPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPD--VLVWQALLGACSIHGD  542 (648)
Q Consensus       468 ~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~g~  542 (648)
                      .+...|+++.|...+.+.... ..  ......+......+...++.+++...+.+. ...++  ...+..+...+...++
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (291)
T COG0457         139 ALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK  217 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence            556666666666666666331 11  112333333333455666677777666665 33333  4556666666666677


Q ss_pred             hHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816          543 SEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       543 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  590 (648)
                      ++.|...+..+....|.....+......+...|.++++...+++....
T Consensus       218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (291)
T COG0457         218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL  265 (291)
T ss_pred             HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            777777777777766664455555555555556677777666666553

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.72  E-value=0.52  Score=43.97  Aligned_cols=120  Identities=11%  Similarity=0.110  Sum_probs=81.4

Q ss_pred             HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHHcCChH
Q 037816          468 ACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQA---LLGACSIHGDSE  544 (648)
Q Consensus       468 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~g~~~  544 (648)
                      .....|++.+|...|+.....  .+-+...--.++.+|...|+.+.|..++..++..-...-+..   -+..+.+.....
T Consensus       143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~  220 (304)
T COG3118         143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP  220 (304)
T ss_pred             hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence            356778888888888888763  333566777788888888888888888888844433333322   222333333333


Q ss_pred             HHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816          545 MGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       545 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  590 (648)
                      +.. -++.-...+|+|...-..++..+...|+.++|.+.+=.+.++
T Consensus       221 ~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~  265 (304)
T COG3118         221 EIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR  265 (304)
T ss_pred             CHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            322 234445678888888888888888899999888887777654

>PRK11906 transcriptional regulator; Provisional

Probab=95.53  E-value=1.2  Score=44.76  Aligned_cols=144  Identities=11%  Similarity=0.153  Sum_probs=91.9

Q ss_pred             ChHHHHHHHHHHHH-cCCCCC-HHHHHHHHHHHhc---------cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhh
Q 037816          439 NGFKALELYEEMKL-EGVEPT-DVTFLSLLHACSH---------VGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR  507 (648)
Q Consensus       439 ~~~~A~~~~~~m~~-~~~~p~-~~~~~~ll~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  507 (648)
                      ..+.|+.+|.+... +.+.|+ ...|..+..++..         ..+..+|.+.-++..+.  -+-|+.....+..++.-
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel--d~~Da~a~~~~g~~~~~  350 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI--TTVDGKILAIMGLITGL  350 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHh
Confidence            35677788888872 224564 3444444433321         23445666666666652  23377777777777788


Q ss_pred             cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHH--HHHHHHhcCChHHHHHH
Q 037816          508 AGLLIEARSFIERM-PVKPD-VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYIL--MANIYSCSGRWKERAKA  583 (648)
Q Consensus       508 ~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~--l~~~~~~~g~~~~A~~~  583 (648)
                      .|+++.|...|++. ...|| ...|......+.-.|+.++|.+.++++++++|....+-..  .++.|+. ...++|+.+
T Consensus       351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~~~  429 (458)
T PRK11906        351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNIKL  429 (458)
T ss_pred             hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC-CchhhhHHH
Confidence            88888888888888 56666 4456666666777888999999999988888876543332  2233443 456667766


Q ss_pred             HH
Q 037816          584 IK  585 (648)
Q Consensus       584 ~~  585 (648)
                      +-
T Consensus       430 ~~  431 (458)
T PRK11906        430 YY  431 (458)
T ss_pred             Hh
Confidence            54

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=95.45  E-value=0.16  Score=40.60  Aligned_cols=88  Identities=16%  Similarity=0.195  Sum_probs=61.4

Q ss_pred             HhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC----ccHHHHHHHHHhcCCh
Q 037816          504 MVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSP----APYILMANIYSCSGRW  577 (648)
Q Consensus       504 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~  577 (648)
                      +++..|+++.|++.|.+. .+-| ....||.-..++.-.|+.++|+.-+++++++..+..    ..|..-+..|...|+-
T Consensus        52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d  131 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND  131 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence            456677777777777765 3333 456677777777778888888888888777654332    2455666677778888


Q ss_pred             HHHHHHHHHHHhCC
Q 037816          578 KERAKAIKRMKEMG  591 (648)
Q Consensus       578 ~~A~~~~~~m~~~~  591 (648)
                      +.|..-|+...+.|
T Consensus       132 d~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  132 DAARADFEAAAQLG  145 (175)
T ss_pred             HHHHHhHHHHHHhC
Confidence            88888888777766

>PRK11906 transcriptional regulator; Provisional

Probab=95.43  E-value=0.28  Score=48.93  Aligned_cols=117  Identities=11%  Similarity=0.130  Sum_probs=88.2

Q ss_pred             cHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHhhh---------cCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcC
Q 037816          474 LVNKGMEFLKSMTEVHRISPR-AEHYACVVDMVGR---------AGLLIEARSFIERM-PVK-PDVLVWQALLGACSIHG  541 (648)
Q Consensus       474 ~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g  541 (648)
                      ..+.|..+|.+........|+ ...|..+..++..         .....+|.++.++. .+. -|+.....+..+..-.+
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~  352 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG  352 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence            456788888888733345563 4455554444322         23355666666666 444 46777777878788888


Q ss_pred             ChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816          542 DSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       542 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  590 (648)
                      +++.|...|+++..++|+.+.+|...+....-.|+.++|.+.+++..+.
T Consensus       353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL  401 (458)
T PRK11906        353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL  401 (458)
T ss_pred             chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence            8999999999999999999999999999999999999999999997664

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=95.36  E-value=0.59  Score=38.74  Aligned_cols=19  Identities=21%  Similarity=0.168  Sum_probs=11.8

Q ss_pred             hHHHHHHHHHHHhcCCCCC
Q 037816          543 SEMGKYAAEKLFLAQPDSP  561 (648)
Q Consensus       543 ~~~A~~~~~~~~~~~p~~~  561 (648)
                      ...|...|+++++.-|++.
T Consensus       115 ~~~A~~~f~~lv~~yP~S~  133 (142)
T PF13512_consen  115 ARQAFRDFEQLVRRYPNSE  133 (142)
T ss_pred             HHHHHHHHHHHHHHCcCCh
Confidence            4456666666666666653

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=95.32  E-value=0.46  Score=39.34  Aligned_cols=88  Identities=17%  Similarity=0.161  Sum_probs=54.8

Q ss_pred             HHhhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc---cHHHHHHHHHhc
Q 037816          503 DMVGRAGLLIEARSFIERM----PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPA---PYILMANIYSCS  574 (648)
Q Consensus       503 ~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~  574 (648)
                      ....+.|++++|.+.|+.+    +..| ....-..|+.+|.+.++++.|+..+++-++++|.++.   ++...+-++...
T Consensus        18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~   97 (142)
T PF13512_consen   18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQ   97 (142)
T ss_pred             HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence            3445667777777777776    2222 2344555777888888888888888888888887653   233333333333


Q ss_pred             CC---------------hHHHHHHHHHHHhC
Q 037816          575 GR---------------WKERAKAIKRMKEM  590 (648)
Q Consensus       575 g~---------------~~~A~~~~~~m~~~  590 (648)
                      ..               ..+|...|+++++.
T Consensus        98 ~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~  128 (142)
T PF13512_consen   98 DEGSLQSFFRSDRDPTPARQAFRDFEQLVRR  128 (142)
T ss_pred             hhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence            33               56677777776653

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=95.32  E-value=0.21  Score=40.93  Aligned_cols=77  Identities=17%  Similarity=0.317  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHhH--------------HhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC---
Q 037816          459 DVTFLSLLHACSHVGLVNKGMEFLKSMT--------------EVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM---  521 (648)
Q Consensus       459 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~--------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---  521 (648)
                      ..++..++.++++.|+.+....+++..-              ......|+..+..+++.+|+..|++..|+++++..   
T Consensus         2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~   81 (126)
T PF12921_consen    2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK   81 (126)
T ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            3445555555555555555555554431              01123344444445555555455555554444433   


Q ss_pred             -CCCCCHHHHHHHHH
Q 037816          522 -PVKPDVLVWQALLG  535 (648)
Q Consensus       522 -~~~p~~~~~~~l~~  535 (648)
                       +++-+..+|..|+.
T Consensus        82 Y~I~i~~~~W~~Ll~   96 (126)
T PF12921_consen   82 YPIPIPKEFWRRLLE   96 (126)
T ss_pred             cCCCCCHHHHHHHHH
Confidence             33333444444443

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.26  E-value=1.1  Score=44.95  Aligned_cols=101  Identities=10%  Similarity=0.168  Sum_probs=69.4

Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCC-C-CCC--HHHHHHHHHH
Q 037816          461 TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMP-V-KPD--VLVWQALLGA  536 (648)
Q Consensus       461 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~--~~~~~~l~~~  536 (648)
                      +-..+..++-+.|+.++|.+.++++.+.+....+..+...|+..+...+.+.++..++.+.. + -|.  ..+|+..+-.
T Consensus       261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk  340 (539)
T PF04184_consen  261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK  340 (539)
T ss_pred             hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence            33456667788999999999999998753322355677889999999999999999998882 2 233  3446555433


Q ss_pred             HHHcCC---------------hHHHHHHHHHHHhcCCCCC
Q 037816          537 CSIHGD---------------SEMGKYAAEKLFLAQPDSP  561 (648)
Q Consensus       537 ~~~~g~---------------~~~A~~~~~~~~~~~p~~~  561 (648)
                      +...++               ...|.+.+.++.+.+|.-+
T Consensus       341 aRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp  380 (539)
T PF04184_consen  341 ARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP  380 (539)
T ss_pred             HHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence            333332               2345677888888877643

The molecular function of this protein is uncertain.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=94.95  E-value=1.1  Score=46.41  Aligned_cols=115  Identities=20%  Similarity=0.125  Sum_probs=70.7

Q ss_pred             cCcHHHHHHHHHHhHHhcCCCCChhHHH-HHHHHhhhcCCHHHHHHHHHhC-CCC-----CCHHHHHHHHHHHHHcCChH
Q 037816          472 VGLVNKGMEFLKSMTEVHRISPRAEHYA-CVVDMVGRAGLLIEARSFIERM-PVK-----PDVLVWQALLGACSIHGDSE  544 (648)
Q Consensus       472 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~-~~~-----p~~~~~~~l~~~~~~~g~~~  544 (648)
                      ..+.+.|.++++.+.+.   -|+...|. .-.+.+...|++++|++.|++. ...     .....+--+...+.-..+++
T Consensus       246 ~~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~  322 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE  322 (468)
T ss_pred             CCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence            34567777777777663   34443333 3345566677777777777765 111     12333444556677778888


Q ss_pred             HHHHHHHHHHhcCCCCCccHHHH-HHHHHhcCCh-------HHHHHHHHHHHh
Q 037816          545 MGKYAAEKLFLAQPDSPAPYILM-ANIYSCSGRW-------KERAKAIKRMKE  589 (648)
Q Consensus       545 ~A~~~~~~~~~~~p~~~~~~~~l-~~~~~~~g~~-------~~A~~~~~~m~~  589 (648)
                      +|...+..+.+.+.-+..+|..+ +-++...|+.       ++|.+++.+...
T Consensus       323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~  375 (468)
T PF10300_consen  323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK  375 (468)
T ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence            88888888877665555555433 3344466777       777777777644

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=94.89  E-value=3.1  Score=38.24  Aligned_cols=199  Identities=17%  Similarity=0.108  Sum_probs=128.7

Q ss_pred             HHHHHHHHHHhccCChhHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC--CC-hhHHHHHHH-H
Q 037816          359 NMVSAVLGVFGVDTSLGLGKQIHSLIIKS-DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP--RN-SVSWNSMIA-A  433 (648)
Q Consensus       359 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~-~  433 (648)
                      ..+......+...+....+...+...... ........+......+...+.+..+...+.....  ++ ......... .
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (291)
T COG0457          60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA  139 (291)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence            44444444455555555555555444432 2233444555555566666667777777766553  21 122222333 6


Q ss_pred             HHHcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHhhhcCC
Q 037816          434 FARHGNGFKALELYEEMKLEGV--EPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP-RAEHYACVVDMVGRAGL  510 (648)
Q Consensus       434 ~~~~~~~~~A~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~  510 (648)
                      +...|+++.|...+.+......  ......+......+...++.+.+...+......  .+. ....+..+...+...++
T Consensus       140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  217 (291)
T COG0457         140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLGK  217 (291)
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHccc
Confidence            7788999999999988865221  112334444444467788999999999999773  334 47778888888999999


Q ss_pred             HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 037816          511 LIEARSFIERM-PVKPD-VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD  559 (648)
Q Consensus       511 ~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  559 (648)
                      ++.|...+... ...|+ ...+..+...+...+..+.+...+.+.....|.
T Consensus       218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            99999998887 44554 445555555556777899999999999988887

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.86  E-value=1.4  Score=44.99  Aligned_cols=155  Identities=9%  Similarity=0.055  Sum_probs=94.7

Q ss_pred             HHHhcCCchHHHHHHH--HHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCC
Q 037816          129 GFLRNGEFDMGFGFFK--RSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS  206 (648)
Q Consensus       129 ~~~~~g~~~~A~~~~~--~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  206 (648)
                      ...-.|+++++.++.+  ++.. .+ | .. ....+++.+.+.|..+.|..+.         .|+.   .-.....+.|+
T Consensus       270 ~av~~~d~~~v~~~i~~~~ll~-~i-~-~~-~~~~i~~fL~~~G~~e~AL~~~---------~D~~---~rFeLAl~lg~  333 (443)
T PF04053_consen  270 TAVLRGDFEEVLRMIAASNLLP-NI-P-KD-QGQSIARFLEKKGYPELALQFV---------TDPD---HRFELALQLGN  333 (443)
T ss_dssp             HHHHTT-HHH-----HHHHTGG-G----HH-HHHHHHHHHHHTT-HHHHHHHS---------S-HH---HHHHHHHHCT-
T ss_pred             HHHHcCChhhhhhhhhhhhhcc-cC-C-hh-HHHHHHHHHHHCCCHHHHHhhc---------CChH---HHhHHHHhcCC
Confidence            4455677777666554  1111 11 2 22 4667777777777777777663         2322   23455678899


Q ss_pred             hhHHHHHhcccCCCCcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHh
Q 037816          207 SSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL  286 (648)
Q Consensus       207 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~  286 (648)
                      ++.|.++.++..  +...|..|.+...+.|+++-|.+.|++..+         |..++-.+...|+.+.-.++.+.....
T Consensus       334 L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~  402 (443)
T PF04053_consen  334 LDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER  402 (443)
T ss_dssp             HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence            999999888776  445899999999999999999999988764         566666777778777777777666655


Q ss_pred             cCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 037816          287 ALQSDLCIESALMDMYSKCGSVEDAWQIFE  316 (648)
Q Consensus       287 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  316 (648)
                      |-      ++....++.-.|++++..+++.
T Consensus       403 ~~------~n~af~~~~~lgd~~~cv~lL~  426 (443)
T PF04053_consen  403 GD------INIAFQAALLLGDVEECVDLLI  426 (443)
T ss_dssp             T-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred             cC------HHHHHHHHHHcCCHHHHHHHHH
Confidence            52      3444445555666666655544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=94.79  E-value=4.3  Score=39.49  Aligned_cols=58  Identities=9%  Similarity=-0.053  Sum_probs=25.1

Q ss_pred             HHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHH-hCCCHHHHHHHHhhc
Q 037816          360 MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYS-KCGDLEDSIKVFSRM  419 (648)
Q Consensus       360 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~  419 (648)
                      ....+..+....|++..|..--+....  ..|....|..|.+.-. ..|+-.++...+.+.
T Consensus       331 s~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqa  389 (531)
T COG3898         331 SSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQA  389 (531)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence            333444444444554444433333322  1344444444444332 235555555555443

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.72  E-value=3.9  Score=43.86  Aligned_cols=147  Identities=10%  Similarity=0.071  Sum_probs=85.2

Q ss_pred             HHHHHHHHHhcCCChhHHHHhhccCCCCCcccHHHHH----HHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHh
Q 037816           91 IWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMV----SGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC  166 (648)
Q Consensus        91 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~y~~li----~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~  166 (648)
                      ....-+..+.+..-++-|+.+-+.-..+ ..+-..+.    .-+.+.|++++|...|-+-+.. +.|      ..+++-+
T Consensus       336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d-~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~------s~Vi~kf  407 (933)
T KOG2114|consen  336 DLETKLDILFKKNLYKVAINLAKSQHLD-EDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP------SEVIKKF  407 (933)
T ss_pred             cHHHHHHHHHHhhhHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh------HHHHHHh
Confidence            3344567777778888888877665532 22222222    3345678888888887665432 111      2244444


Q ss_pred             hccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccCCCCcc-cHHHHHHHHHHCCCchHHHHHH
Q 037816          167 DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVI-TWTAVISGLVQNQLYEEGLKLF  245 (648)
Q Consensus       167 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~  245 (648)
                      ........-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+........ -....+..+.+.+-.++|.-+-
T Consensus       408 Ldaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA  486 (933)
T KOG2114|consen  408 LDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLA  486 (933)
T ss_pred             cCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHH
Confidence            5555555666677777777754 3344467888888888888887777766522111 1334445555555555544443


Q ss_pred             H
Q 037816          246 V  246 (648)
Q Consensus       246 ~  246 (648)
                      .
T Consensus       487 ~  487 (933)
T KOG2114|consen  487 T  487 (933)
T ss_pred             H
Confidence            3

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=94.70  E-value=0.097  Score=41.83  Aligned_cols=56  Identities=16%  Similarity=0.123  Sum_probs=52.8

Q ss_pred             HHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816          535 GACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       535 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  590 (648)
                      -+.+..|+.+.|++.|.+++.+-|..+++|+.-+.++.-+|+.++|++-+++..+.
T Consensus        51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL  106 (175)
T KOG4555|consen   51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL  106 (175)
T ss_pred             HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence            45788999999999999999999999999999999999999999999999998875

>PRK11619 lytic murein transglycosylase; Provisional

Probab=94.66  E-value=8  Score=41.94  Aligned_cols=73  Identities=11%  Similarity=0.012  Sum_probs=36.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccC
Q 037816          298 LMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDT  372 (648)
Q Consensus       298 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~  372 (648)
                      -+..+.+.+++....+++..- ..+...-.....+....|+.++|....+.+-..| ...+..+..++..+.+.|
T Consensus       105 ~l~~La~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g  177 (644)
T PRK11619        105 FVNELARREDWRGLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSG  177 (644)
T ss_pred             HHHHHHHccCHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcC
Confidence            334445566666666533222 2233334455566666777666666666554444 223344444444444333

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=94.64  E-value=0.12  Score=44.84  Aligned_cols=56  Identities=16%  Similarity=0.076  Sum_probs=33.2

Q ss_pred             HHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816          535 GACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       535 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  590 (648)
                      .++.+.+.++.|+.-..++++++|....+...-+.+|.+..++++|++-|+++.+.
T Consensus       142 aa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~  197 (271)
T KOG4234|consen  142 AALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILES  197 (271)
T ss_pred             HHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            34555566666666666666666655555555566666666666666666666553

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.60  E-value=0.11  Score=30.90  Aligned_cols=32  Identities=25%  Similarity=0.211  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 037816          529 VWQALLGACSIHGDSEMGKYAAEKLFLAQPDS  560 (648)
Q Consensus       529 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~  560 (648)
                      .|..+..++...|++++|++.++++++++|++
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            45566667777777777777777777777754

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=94.59  E-value=3.2  Score=38.96  Aligned_cols=170  Identities=12%  Similarity=0.081  Sum_probs=104.8

Q ss_pred             HHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 037816          411 DSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHR  490 (648)
Q Consensus       411 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~  490 (648)
                      ...+++++...+....--.-.......|++.+|..+|+...... +-+...-..+..+|...|+.+.|..++..+-.. -
T Consensus       121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~  198 (304)
T COG3118         121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-A  198 (304)
T ss_pred             HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-c
Confidence            33444454444322222222334566788889999888888754 223455667788889999999999998887432 1


Q ss_pred             CCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCCCccHHHH
Q 037816          491 ISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQ--PDSPAPYILM  567 (648)
Q Consensus       491 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l  567 (648)
                      -.........-+..+.+.....+...+-++..-.| |...-..+...+...|+.+.|.+.+-.+++.+  -.+..+-..+
T Consensus       199 ~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~l  278 (304)
T COG3118         199 QDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTL  278 (304)
T ss_pred             hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHH
Confidence            11111222233444555554444444445553345 56666677778888999999998887777654  4566777888


Q ss_pred             HHHHHhcCChHHHHH
Q 037816          568 ANIYSCSGRWKERAK  582 (648)
Q Consensus       568 ~~~~~~~g~~~~A~~  582 (648)
                      +..+.-.|.-+.+.-
T Consensus       279 le~f~~~g~~Dp~~~  293 (304)
T COG3118         279 LELFEAFGPADPLVL  293 (304)
T ss_pred             HHHHHhcCCCCHHHH
Confidence            888887775554433

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.58  E-value=0.32  Score=45.78  Aligned_cols=159  Identities=12%  Similarity=0.040  Sum_probs=114.8

Q ss_pred             HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHH----HHHHHhhhcCCH
Q 037816          436 RHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYA----CVVDMVGRAGLL  511 (648)
Q Consensus       436 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~  511 (648)
                      -.|+..+|...|+++.+. .+-|...+..-=.+|...|+.+.-...++++..  ...++...|.    .+.-++..+|-+
T Consensus       115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y  191 (491)
T KOG2610|consen  115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY  191 (491)
T ss_pred             ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence            478889999999999875 355777777778899999999999999999876  3456554444    344456689999


Q ss_pred             HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC----CccHHHHHHHHHhcCChHHHHHHHH
Q 037816          512 IEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS----PAPYILMANIYSCSGRWKERAKAIK  585 (648)
Q Consensus       512 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~  585 (648)
                      ++|++.-++. .+.| |.-...++...+.-.|+..++.++..+-...-...    ..-|-..+-.+...+.++.|+++|+
T Consensus       192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD  271 (491)
T KOG2610|consen  192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD  271 (491)
T ss_pred             hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence            9999999888 5444 55556666667778899999999887754322211    1234556666778899999999998


Q ss_pred             HHHhCCCCCCCc
Q 037816          586 RMKEMGVDKETG  597 (648)
Q Consensus       586 ~m~~~~~~~~~~  597 (648)
                      +=.-.....+.+
T Consensus       272 ~ei~k~l~k~Da  283 (491)
T KOG2610|consen  272 REIWKRLEKDDA  283 (491)
T ss_pred             HHHHHHhhccch
Confidence            854444444443

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.54  E-value=8.2  Score=41.60  Aligned_cols=176  Identities=9%  Similarity=-0.045  Sum_probs=109.8

Q ss_pred             cHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHH----HhhccCChHHHHHHHHHHHHhCCCCChhHHHHH
Q 037816          122 SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILS----ACDRSELSLVSKMIHCLVYLCGYEEEVTVGNAL  197 (648)
Q Consensus       122 ~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  197 (648)
                      ....-+..+++...+..|+.+-+.   .+  .+.. +...+.+    -+.+.|++++|...+-+-+.. +.|     ..+
T Consensus       336 ~le~kL~iL~kK~ly~~Ai~LAk~---~~--~d~d-~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~V  403 (933)
T KOG2114|consen  336 DLETKLDILFKKNLYKVAINLAKS---QH--LDED-TLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEV  403 (933)
T ss_pred             cHHHHHHHHHHhhhHHHHHHHHHh---cC--CCHH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHH
Confidence            345667777888888888887654   22  2222 3333433    356789999998887665532 122     224


Q ss_pred             HHHhHhcCChhHHHHHhcccCCC---CcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChH
Q 037816          198 ITSYFKCGSSSSGRKVFGEMRVR---NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALC  274 (648)
Q Consensus       198 i~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~  274 (648)
                      |.-|....++..-..+++.+.+.   +...-..|+.+|.+.++.++-.++.+.-. .|..  ..-....+..|.+.+-.+
T Consensus       404 i~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~  480 (933)
T KOG2114|consen  404 IKKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLD  480 (933)
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHH
Confidence            55556666666666666666543   55567889999999999998888776654 2321  112445566666677777


Q ss_pred             HHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC
Q 037816          275 EGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE  320 (648)
Q Consensus       275 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  320 (648)
                      +|..+-.....     ..   ..+--.+-..+++++|.+.+..++-
T Consensus       481 ~a~~LA~k~~~-----he---~vl~ille~~~ny~eAl~yi~slp~  518 (933)
T KOG2114|consen  481 EAELLATKFKK-----HE---WVLDILLEDLHNYEEALRYISSLPI  518 (933)
T ss_pred             HHHHHHHHhcc-----CH---HHHHHHHHHhcCHHHHHHHHhcCCH
Confidence            76655444332     12   2233345566889999999888764

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.50  E-value=0.42  Score=44.11  Aligned_cols=61  Identities=13%  Similarity=0.114  Sum_probs=28.5

Q ss_pred             HHHHhhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 037816          501 VVDMVGRAGLLIEARSFIERM----PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSP  561 (648)
Q Consensus       501 l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~  561 (648)
                      |.+++...|++++|..+|..+    +..| -+..+--|..+..+.|+.++|...|+++.+.-|...
T Consensus       184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~  249 (262)
T COG1729         184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTD  249 (262)
T ss_pred             HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence            444444444444444444443    1111 133344444455555555555555555555555543

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.47  E-value=0.088  Score=31.41  Aligned_cols=32  Identities=22%  Similarity=0.121  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 037816          528 LVWQALLGACSIHGDSEMGKYAAEKLFLAQPD  559 (648)
Q Consensus       528 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  559 (648)
                      .+|..+..+|...|++++|+..++++++.+|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            35666777777777777777777777777775

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=94.45  E-value=2.6  Score=35.44  Aligned_cols=125  Identities=13%  Similarity=0.064  Sum_probs=70.4

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhh
Q 037816          428 NSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR  507 (648)
Q Consensus       428 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  507 (648)
                      ..++..+...+.......+++.+...+ ..+....+.++..|++.+ .......++.       ..+.......++.|.+
T Consensus        11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~~   81 (140)
T smart00299       11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCEK   81 (140)
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHHH
Confidence            445666666667777777777777665 345566677777776543 2333333331       1223333446666677


Q ss_pred             cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHhcCCCCCccHHHHHHHHH
Q 037816          508 AGLLIEARSFIERMPVKPDVLVWQALLGACSIH-GDSEMGKYAAEKLFLAQPDSPAPYILMANIYS  572 (648)
Q Consensus       508 ~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  572 (648)
                      .+.++++.-++.+++..      ...+..+... ++++.|++++++     +.++..|..++..+.
T Consensus        82 ~~l~~~~~~l~~k~~~~------~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l  136 (140)
T smart00299       82 AKLYEEAVELYKKDGNF------KDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL  136 (140)
T ss_pred             cCcHHHHHHHHHhhcCH------HHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence            77777777777776422      1222333333 677777776665     234456666555443

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=94.44  E-value=0.38  Score=44.21  Aligned_cols=99  Identities=17%  Similarity=0.167  Sum_probs=76.9

Q ss_pred             HHHHHHhcc--CCCcccHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccC-----------
Q 037816          311 AWQIFEFAE--ELDGVSMTVILVGFAQN-----GFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDT-----------  372 (648)
Q Consensus       311 A~~~~~~~~--~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-----------  372 (648)
                      .++.|....  ++|-.+|-+.+..+...     +..+-....++.|.+-|+.-|..+|..||+.+-+..           
T Consensus        53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F  132 (406)
T KOG3941|consen   53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF  132 (406)
T ss_pred             hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence            344555555  46677777777776554     556667777889999999999999999998876543           


Q ss_pred             -----ChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCH
Q 037816          373 -----SLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDL  409 (648)
Q Consensus       373 -----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  409 (648)
                           +-+-+..++++|..+|+.||..+-..|++++.+.+-.
T Consensus       133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p  174 (406)
T KOG3941|consen  133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP  174 (406)
T ss_pred             hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence                 3456788999999999999999999999999887753

>PRK15331 chaperone protein SicA; Provisional

Probab=94.36  E-value=1.2  Score=37.99  Aligned_cols=84  Identities=10%  Similarity=-0.045  Sum_probs=42.1

Q ss_pred             HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHH
Q 037816          435 ARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEA  514 (648)
Q Consensus       435 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  514 (648)
                      ...|++++|..+|+-+.-.+ .-+..-+..|..++-..+++++|...|...... . .-|+..+-....+|...|+.+.|
T Consensus        48 y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l~~~~~A  124 (165)
T PRK15331         48 YNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLMRKAAKA  124 (165)
T ss_pred             HHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHhCCHHHH
Confidence            34556666666665555433 112333334444445555666666666555432 1 12344444455555566666666


Q ss_pred             HHHHHhC
Q 037816          515 RSFIERM  521 (648)
Q Consensus       515 ~~~~~~~  521 (648)
                      ...|...
T Consensus       125 ~~~f~~a  131 (165)
T PRK15331        125 RQCFELV  131 (165)
T ss_pred             HHHHHHH
Confidence            6655554

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=94.34  E-value=9.1  Score=43.05  Aligned_cols=54  Identities=13%  Similarity=0.059  Sum_probs=24.7

Q ss_pred             HHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC
Q 037816          466 LHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM  521 (648)
Q Consensus       466 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  521 (648)
                      +.+|...|++.+|+.+..++..  +-.--..+-..|+..+...+++-+|.++..+.
T Consensus       972 l~a~~~~~dWr~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen  972 LKAYKECGDWREALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred             HHHHHHhccHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence            4445555555555555554422  11111112234455555555555555555554

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=94.23  E-value=2.8  Score=35.22  Aligned_cols=28  Identities=14%  Similarity=0.243  Sum_probs=14.6

Q ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHcC
Q 037816          123 WNTMVSGFLRNGEFDMGFGFFKRSLELG  150 (648)
Q Consensus       123 y~~li~~~~~~g~~~~A~~~~~~m~~~~  150 (648)
                      ...++..+...+.+.....+++.+...+
T Consensus        10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~   37 (140)
T smart00299       10 VSEVVELFEKRNLLEELIPYLESALKLN   37 (140)
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHccC
Confidence            3445555555555555555555555443

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=93.79  E-value=8  Score=38.61  Aligned_cols=149  Identities=12%  Similarity=-0.001  Sum_probs=81.5

Q ss_pred             ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hhH
Q 037816          423 NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP---TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR--AEH  497 (648)
Q Consensus       423 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~  497 (648)
                      ...+|..+...+.+.|.++.|...+.++...+..+   .+.....-.+.+-..|+..+|...++..... .+..+  ...
T Consensus       145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~  223 (352)
T PF02259_consen  145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS  223 (352)
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence            44567777888888888888888888877643211   2333444456666778888888888877762 12211  111


Q ss_pred             HHHHHHHhhhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHHc------CChHHHHHHHHHHHhcCCCCCccHHHHHHH
Q 037816          498 YACVVDMVGRAGLLIEARSF-IERMPVKPDVLVWQALLGACSIH------GDSEMGKYAAEKLFLAQPDSPAPYILMANI  570 (648)
Q Consensus       498 ~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  570 (648)
                      ...+...+..  ..+..... ........-...+..+..-+...      ++.+.+...|+.+.+..|.....|..++..
T Consensus       224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~  301 (352)
T PF02259_consen  224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF  301 (352)
T ss_pred             HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence            1111111100  00000000 00000000012233333333333      788889999999999999888888888776


Q ss_pred             HHhc
Q 037816          571 YSCS  574 (648)
Q Consensus       571 ~~~~  574 (648)
                      +.+.
T Consensus       302 ~~~~  305 (352)
T PF02259_consen  302 NDKL  305 (352)
T ss_pred             HHHH
Confidence            6543

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=93.76  E-value=6.7  Score=37.62  Aligned_cols=17  Identities=6%  Similarity=-0.310  Sum_probs=11.1

Q ss_pred             HHHcCChHHHHHHHHHH
Q 037816          537 CSIHGDSEMGKYAAEKL  553 (648)
Q Consensus       537 ~~~~g~~~~A~~~~~~~  553 (648)
                      +.+.++++.|.+.|+-.
T Consensus       256 ~~~~k~y~~A~~w~~~a  272 (278)
T PF08631_consen  256 HYKAKNYDEAIEWYELA  272 (278)
T ss_pred             HHhhcCHHHHHHHHHHH
Confidence            45667777777766644

It is also involved in sporulation [].

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.67  E-value=1.8  Score=44.29  Aligned_cols=154  Identities=16%  Similarity=0.114  Sum_probs=78.7

Q ss_pred             HHhCCCHHHHHHHHh--hcC-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHH
Q 037816          403 YSKCGDLEDSIKVFS--RMA-PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGM  479 (648)
Q Consensus       403 ~~~~g~~~~A~~~~~--~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~  479 (648)
                      ..-.++++++.++..  ++. .-+....+.++.-+.+.|-.+.|+.+..+-.            .-.....+.|+++.|.
T Consensus       271 av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~  338 (443)
T PF04053_consen  271 AVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIAL  338 (443)
T ss_dssp             HHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHH
T ss_pred             HHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHH
Confidence            334566666544443  111 1123345666666666677776666543321            1123344566666666


Q ss_pred             HHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 037816          480 EFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD  559 (648)
Q Consensus       480 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  559 (648)
                      ++.++.       ++...|..|.+...+.|+++-|++.|.+.+      -+..|+-.|.-.|+.+.-.++.+.+...+- 
T Consensus       339 ~~a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~-  404 (443)
T PF04053_consen  339 EIAKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKAK------DFSGLLLLYSSTGDREKLSKLAKIAEERGD-  404 (443)
T ss_dssp             HHCCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--
T ss_pred             HHHHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc------CccccHHHHHHhCCHHHHHHHHHHHHHccC-
Confidence            654433       355677777777777777777777777763      134455556666776655555555443322 


Q ss_pred             CCccHHHHHHHHHhcCChHHHHHHHHH
Q 037816          560 SPAPYILMANIYSCSGRWKERAKAIKR  586 (648)
Q Consensus       560 ~~~~~~~l~~~~~~~g~~~~A~~~~~~  586 (648)
                          ++....++.-.|+.++..+++.+
T Consensus       405 ----~n~af~~~~~lgd~~~cv~lL~~  427 (443)
T PF04053_consen  405 ----INIAFQAALLLGDVEECVDLLIE  427 (443)
T ss_dssp             ----HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred             ----HHHHHHHHHHcCCHHHHHHHHHH
Confidence                33444445555777777766654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=93.65  E-value=10  Score=39.36  Aligned_cols=180  Identities=15%  Similarity=0.035  Sum_probs=95.1

Q ss_pred             chhHHHHHHHHHHhcCCHHHHHHHHHhccCC---CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 037816          291 DLCIESALMDMYSKCGSVEDAWQIFEFAEEL---DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGV  367 (648)
Q Consensus       291 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~  367 (648)
                      +..+|..-+..-.+.|+.+.+.-+|+...-|   =...|--.+.-....|+.+-|-.++..-.+-.++-.+.+-..-...
T Consensus       296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f  375 (577)
T KOG1258|consen  296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF  375 (577)
T ss_pred             HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence            4556777777777888888888777776553   1223333444444457777777666655554333333222222222


Q ss_pred             HhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHH---HHHhhcCC--CChhHHHHHHHHH-----HHc
Q 037816          368 FGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSI---KVFSRMAP--RNSVSWNSMIAAF-----ARH  437 (648)
Q Consensus       368 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~---~~~~~~~~--~~~~~~~~l~~~~-----~~~  437 (648)
                      .-..|+.+.|..+++.+...- +.-..+-..-+....+.|..+.+.   .++....+  .+....+.+.--+     .-.
T Consensus       376 ~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~  454 (577)
T KOG1258|consen  376 EESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIR  454 (577)
T ss_pred             HHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHh
Confidence            335567788888887777654 222233333445556666666666   33333321  1222222222222     224


Q ss_pred             CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 037816          438 GNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHV  472 (648)
Q Consensus       438 ~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~  472 (648)
                      ++.+.|..++.++.+. ++++...|..++.-+...
T Consensus       455 ~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~  488 (577)
T KOG1258|consen  455 EDADLARIILLEANDI-LPDCKVLYLELIRFELIQ  488 (577)
T ss_pred             cCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhC
Confidence            5666666666666654 244555555555544433

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=93.45  E-value=6.3  Score=36.33  Aligned_cols=56  Identities=16%  Similarity=0.137  Sum_probs=43.6

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHhcCCCCC---ccHHHHHHHHHhcCChHHHHHHHHHHH
Q 037816          533 LLGACSIHGDSEMGKYAAEKLFLAQPDSP---APYILMANIYSCSGRWKERAKAIKRMK  588 (648)
Q Consensus       533 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~  588 (648)
                      +.+-|.+.|.+..|..-++.+++.-|...   ..+..+..+|...|-.++|...-+-+.
T Consensus       173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~  231 (254)
T COG4105         173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG  231 (254)
T ss_pred             HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence            45668899999999999999998766654   455667778999999999988765553

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=93.41  E-value=0.15  Score=30.97  Aligned_cols=26  Identities=12%  Similarity=0.221  Sum_probs=20.3

Q ss_pred             cHHHHHHHHHhcCChHHHHHHHHHHH
Q 037816          563 PYILMANIYSCSGRWKERAKAIKRMK  588 (648)
Q Consensus       563 ~~~~l~~~~~~~g~~~~A~~~~~~m~  588 (648)
                      +|..++.+|.+.|++++|++++++..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            36778888888888888888888854

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=93.39  E-value=0.4  Score=44.97  Aligned_cols=69  Identities=20%  Similarity=0.319  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCC
Q 037816          528 LVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKE-----MGVDKET  596 (648)
Q Consensus       528 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~  596 (648)
                      .++..++..+...|+.+.+...++++++.+|-+...|..++.+|.+.|+...|+..|+.+.+     .|+.|.+
T Consensus       154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~  227 (280)
T COG3629         154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAP  227 (280)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccH
Confidence            34556667777788888888888888888888888888888888888888888888888765     4555543

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=93.35  E-value=0.65  Score=42.73  Aligned_cols=110  Identities=13%  Similarity=0.130  Sum_probs=79.7

Q ss_pred             HHHhhccCC--CCCcccHHHHHHHHHhc-----CCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccC----------
Q 037816          108 AVKLFDDMP--MRDTVSWNTMVSGFLRN-----GEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSE----------  170 (648)
Q Consensus       108 A~~~~~~~~--~~~~~~y~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~----------  170 (648)
                      ..+.|....  +.|..+|-..+..+...     +..+-....++.|.+.|+.-|-. +|..|+..+-+..          
T Consensus        53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~-vYk~LlnvfPKgkfiP~nvfQ~~  131 (406)
T KOG3941|consen   53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLD-VYKGLLNVFPKGKFIPQNVFQKV  131 (406)
T ss_pred             hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHH-HHHHHHHhCcccccccHHHHHHH
Confidence            344565555  55777888888777553     56677777788999999988888 9999999875543          


Q ss_pred             ------ChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCh-hHHHHHhcccC
Q 037816          171 ------LSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS-SSGRKVFGEMR  218 (648)
Q Consensus       171 ------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~  218 (648)
                            .-+-+..++++|...|+.||.++-..|++++.+.+-. .+..++.-.|+
T Consensus       132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP  186 (406)
T KOG3941|consen  132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP  186 (406)
T ss_pred             HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence                  3345677888888889999988888888888877653 33444444443

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=93.22  E-value=5.6  Score=38.34  Aligned_cols=124  Identities=17%  Similarity=0.134  Sum_probs=64.5

Q ss_pred             HHHHHHHhCCCHHHHHHHHhhcCC-------C--ChhHHHHHHHHHHHcCChHHHHHHHHHHHH----cCCCCCHHHHH-
Q 037816          398 GLINMYSKCGDLEDSIKVFSRMAP-------R--NSVSWNSMIAAFARHGNGFKALELYEEMKL----EGVEPTDVTFL-  463 (648)
Q Consensus       398 ~li~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~----~~~~p~~~~~~-  463 (648)
                      ++..++...+.++++++.|+...+       +  ....+..|-..|.+..++++|.-+..+..+    .++.--..-|. 
T Consensus       127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~  206 (518)
T KOG1941|consen  127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA  206 (518)
T ss_pred             hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence            345555555666666666655431       1  233566666666777777776666555443    12111111222 


Q ss_pred             ----HHHHHHhccCcHHHHHHHHHHhHHh---cCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhC
Q 037816          464 ----SLLHACSHVGLVNKGMEFLKSMTEV---HRISP-RAEHYACVVDMVGRAGLLIEARSFIERM  521 (648)
Q Consensus       464 ----~ll~~~~~~g~~~~A~~~~~~~~~~---~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~  521 (648)
                          .+.-++...|....|.+..++..+.   .|-.+ -......+.+.|-..|+.+.|..-|+..
T Consensus       207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A  272 (518)
T KOG1941|consen  207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA  272 (518)
T ss_pred             HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence                2233455566666666666665442   12222 2334455666777777777766666543

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.06  E-value=6.8  Score=35.65  Aligned_cols=142  Identities=11%  Similarity=0.023  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC----CCChhHHHHH
Q 037816          426 SWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRI----SPRAEHYACV  501 (648)
Q Consensus       426 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~~l  501 (648)
                      .|+-....|...|.++.|-..+++.-+                .....+++.|+++|++.......    .--...+..+
T Consensus        93 l~eKAs~lY~E~GspdtAAmaleKAak----------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~  156 (308)
T KOG1585|consen   93 LYEKASELYVECGSPDTAAMALEKAAK----------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKC  156 (308)
T ss_pred             HHHHHHHHHHHhCCcchHHHHHHHHHH----------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence            344455566666666665555554432                11223444444444444321000    1122334445


Q ss_pred             HHHhhhcCCHHHHHHHHHhC-------CCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHh----cCCCCCccHHHHHH
Q 037816          502 VDMVGRAGLLIEARSFIERM-------PVKPDV-LVWQALLGACSIHGDSEMGKYAAEKLFL----AQPDSPAPYILMAN  569 (648)
Q Consensus       502 ~~~~~~~g~~~~A~~~~~~~-------~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~p~~~~~~~~l~~  569 (648)
                      ...|++..++++|-..+.+-       .-.|+. ..+.+.|-.+.-..|+..|...++.-..    ..|.+..+...|+.
T Consensus       157 sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~  236 (308)
T KOG1585|consen  157 SRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLT  236 (308)
T ss_pred             hhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHH
Confidence            56677777777776655443       112222 2344555556666788888888877543    34666677778877


Q ss_pred             HHHhcCChHHHHHHH
Q 037816          570 IYSCSGRWKERAKAI  584 (648)
Q Consensus       570 ~~~~~g~~~~A~~~~  584 (648)
                      +| ..|+.+++..++
T Consensus       237 ay-d~gD~E~~~kvl  250 (308)
T KOG1585|consen  237 AY-DEGDIEEIKKVL  250 (308)
T ss_pred             Hh-ccCCHHHHHHHH
Confidence            76 557777766543

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=93.01  E-value=7.4  Score=35.89  Aligned_cols=158  Identities=18%  Similarity=0.154  Sum_probs=89.5

Q ss_pred             HhCCCHHHHHHHHhhcCCC------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc------
Q 037816          404 SKCGDLEDSIKVFSRMAPR------NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSH------  471 (648)
Q Consensus       404 ~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~------  471 (648)
                      .+.|++++|.+.|+.+...      ...+.-.++.++-+.++++.|+..+++....-..-....|...|.+++.      
T Consensus        45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~  124 (254)
T COG4105          45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD  124 (254)
T ss_pred             HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence            4567777777777776532      2233444556666777788888777777764311112233333333321      


Q ss_pred             -cCcH---HHHHHHHHHhHHhcCC---CCChhH------------HHHHHHHhhhcCCHHHHHHHHHhC-CCCCC----H
Q 037816          472 -VGLV---NKGMEFLKSMTEVHRI---SPRAEH------------YACVVDMVGRAGLLIEARSFIERM-PVKPD----V  527 (648)
Q Consensus       472 -~g~~---~~A~~~~~~~~~~~~~---~~~~~~------------~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~  527 (648)
                       ..+.   ..|..-|+++.+++--   .||...            =..+.+-|.+.|.+..|..-+++| ..-|+    .
T Consensus       125 ~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~  204 (254)
T COG4105         125 VTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVR  204 (254)
T ss_pred             cccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchH
Confidence             1222   3344445555543211   111111            123456788999999998888888 21222    3


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 037816          528 LVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSP  561 (648)
Q Consensus       528 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~  561 (648)
                      ..+-.+..+|...|-.++|...-+-+....|+++
T Consensus       205 eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~  238 (254)
T COG4105         205 EALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ  238 (254)
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence            4455666789999999998887666555556554

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=92.97  E-value=6.4  Score=35.09  Aligned_cols=160  Identities=14%  Similarity=0.045  Sum_probs=88.2

Q ss_pred             ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 037816          423 NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVV  502 (648)
Q Consensus       423 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~  502 (648)
                      -+..||-|.--+...|+++.|.+.|+...+.+..-+-...|. .-++.-.|++..|.+-+...-+...-.|-...|--++
T Consensus        98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNR-gi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~  176 (297)
T COG4785          98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR-GIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN  176 (297)
T ss_pred             cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcc-ceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH
Confidence            346777777777788888888888888877541112222222 2234556788888777666655323333333333222


Q ss_pred             HHhhhcCCHHHHHH-HHHhCCCCCCHHHHHHHHHHH-HHcCChHHHHHHHHHHHhcCCCC-------CccHHHHHHHHHh
Q 037816          503 DMVGRAGLLIEARS-FIERMPVKPDVLVWQALLGAC-SIHGDSEMGKYAAEKLFLAQPDS-------PAPYILMANIYSC  573 (648)
Q Consensus       503 ~~~~~~g~~~~A~~-~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~  573 (648)
                      .   ..-++.+|.. +.++. ...|..-|...+-.+ ..+=..+   .+++++.+...++       ..+|..++.-+..
T Consensus       177 E---~k~dP~~A~tnL~qR~-~~~d~e~WG~~iV~~yLgkiS~e---~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~  249 (297)
T COG4785         177 E---QKLDPKQAKTNLKQRA-EKSDKEQWGWNIVEFYLGKISEE---TLMERLKADATDNTSLAEHLTETYFYLGKYYLS  249 (297)
T ss_pred             H---hhCCHHHHHHHHHHHH-HhccHhhhhHHHHHHHHhhccHH---HHHHHHHhhccchHHHHHHHHHHHHHHHHHHhc
Confidence            2   2334555554 33444 123334444433332 2221222   2333333322222       3578888999999


Q ss_pred             cCChHHHHHHHHHHHhC
Q 037816          574 SGRWKERAKAIKRMKEM  590 (648)
Q Consensus       574 ~g~~~~A~~~~~~m~~~  590 (648)
                      .|+.++|..+|+-....
T Consensus       250 ~G~~~~A~~LfKLaian  266 (297)
T COG4785         250 LGDLDEATALFKLAVAN  266 (297)
T ss_pred             cccHHHHHHHHHHHHHH
Confidence            99999999999877553

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=92.94  E-value=7.9  Score=40.28  Aligned_cols=157  Identities=17%  Similarity=0.144  Sum_probs=83.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCH------HHHHHHHHHHhc----cCChhHHHHHHHHHHHhCCCCchhHH
Q 037816          327 TVILVGFAQNGFEEEAMQLFVKMVKAGIEIDP------NMVSAVLGVFGV----DTSLGLGKQIHSLIIKSDFTSNPFVN  396 (648)
Q Consensus       327 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~------~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~  396 (648)
                      ..+++...-.|+-+.+++.+.+..+.+-.-.+      -+|..++..++.    ....+.|.++++.+.+.  -|+...|
T Consensus       192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf  269 (468)
T PF10300_consen  192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF  269 (468)
T ss_pred             HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence            33444555556666666666655442211111      123333333332    34566677777776654  2444333


Q ss_pred             H-HHHHHHHhCCCHHHHHHHHhhcCCC-------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037816          397 N-GLINMYSKCGDLEDSIKVFSRMAPR-------NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHA  468 (648)
Q Consensus       397 ~-~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~  468 (648)
                      . .-.+.+...|++++|.+.|+.....       ....+--+.-.+.-.++|++|...|..+.+.. ..+..+|..+..+
T Consensus       270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~  348 (468)
T PF10300_consen  270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA  348 (468)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence            3 3345556677788888877764421       12233334455666777788877777777643 3344444444433


Q ss_pred             H-hccCcH-------HHHHHHHHHhH
Q 037816          469 C-SHVGLV-------NKGMEFLKSMT  486 (648)
Q Consensus       469 ~-~~~g~~-------~~A~~~~~~~~  486 (648)
                      | ...|+.       ++|.++|.++.
T Consensus       349 c~~~l~~~~~~~~~~~~a~~l~~~vp  374 (468)
T PF10300_consen  349 CLLMLGREEEAKEHKKEAEELFRKVP  374 (468)
T ss_pred             HHHhhccchhhhhhHHHHHHHHHHHH
Confidence            3 445555       66666666553

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=92.75  E-value=0.29  Score=31.34  Aligned_cols=38  Identities=21%  Similarity=0.423  Sum_probs=28.1

Q ss_pred             cHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHH
Q 037816          122 SWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTI  161 (648)
Q Consensus       122 ~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~  161 (648)
                      ++..+...|.+.|++++|.++|++..+..  |++...+..
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~--P~~~~a~~~   40 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALD--PDDPEAWRA   40 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCCHHHHHH
Confidence            46677788888888888888888888765  766644433

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=92.55  E-value=0.81  Score=30.61  Aligned_cols=51  Identities=10%  Similarity=0.116  Sum_probs=39.6

Q ss_pred             cHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCceeEEEEcCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCc
Q 037816          563 PYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGY  639 (648)
Q Consensus       563 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~g~  639 (648)
                      ....++-++.+.|++++|.+..+.+++                          .+|...+....-..+.++|.+.|+
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~--------------------------~eP~N~Qa~~L~~~i~~~i~kdgl   53 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLE--------------------------IEPDNRQAQSLKELIEDKIQKDGL   53 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH--------------------------HTTS-HHHHHHHHHHHHHHHHTTT
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHh--------------------------hCCCcHHHHHHHHHHHHHHhccCC
Confidence            356778889999999999999999987                          346777777777778888888774

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=92.54  E-value=4.9  Score=32.66  Aligned_cols=137  Identities=10%  Similarity=0.118  Sum_probs=80.3

Q ss_pred             HHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHH---HHHHHHHHhcCCH
Q 037816          232 LVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIE---SALMDMYSKCGSV  308 (648)
Q Consensus       232 ~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~  308 (648)
                      +.-.|..++..++..+....   .+..-|++++.-....-+-+   .+++.+.+-|--.|....   ..++.+|.+.+..
T Consensus        12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~---yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~   85 (161)
T PF09205_consen   12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCD---YVVETLDSIGKIFDISKCGNLKRVIECYAKRNKL   85 (161)
T ss_dssp             HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HH---HHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT--
T ss_pred             HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchh---HHHHHHHHHhhhcCchhhcchHHHHHHHHHhcch
Confidence            44567888888888877652   45556666666554443333   344444444544444332   2344555554432


Q ss_pred             HHHHHHHHhccCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhC
Q 037816          309 EDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD  388 (648)
Q Consensus       309 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  388 (648)
                      .              ...+..+..+..+|+-+.-.++++.+... -.+++.....+..+|.+.|+..++.+++.++-+.|
T Consensus        86 s--------------e~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG  150 (161)
T PF09205_consen   86 S--------------EYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG  150 (161)
T ss_dssp             ---------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred             H--------------HHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence            2              23344567788888888888888888753 36788888888899999999999998888888877


Q ss_pred             C
Q 037816          389 F  389 (648)
Q Consensus       389 ~  389 (648)
                      +
T Consensus       151 ~  151 (161)
T PF09205_consen  151 L  151 (161)
T ss_dssp             -
T ss_pred             h
Confidence            4

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=92.39  E-value=3.9  Score=39.34  Aligned_cols=48  Identities=10%  Similarity=0.063  Sum_probs=26.5

Q ss_pred             HHHcCCHHHHHHHHHHHHHcC--CCcCHHHHHHHHHHHhccCChhHHHHH
Q 037816          333 FAQNGFEEEAMQLFVKMVKAG--IEIDPNMVSAVLGVFGVDTSLGLGKQI  380 (648)
Q Consensus       333 ~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~  380 (648)
                      +..+.+.++|+..+.+-...-  ...-..+|..+..+.+..|.++++..+
T Consensus        16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~   65 (518)
T KOG1941|consen   16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKF   65 (518)
T ss_pred             HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHH
Confidence            445667777777776665431  111234555556666666666555443

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=92.33  E-value=3.6  Score=41.58  Aligned_cols=151  Identities=12%  Similarity=0.055  Sum_probs=82.9

Q ss_pred             HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHH
Q 037816          436 RHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEAR  515 (648)
Q Consensus       436 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  515 (648)
                      +..+...-++.-++..+  +.||..+.-.++ +--......++.+++++..+. +-    ..+..-- .....|.   ..
T Consensus       180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-gE----~~lg~s~-~~~~~g~---~~  247 (539)
T PF04184_consen  180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-GE----ASLGKSQ-FLQHHGH---FW  247 (539)
T ss_pred             hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-HH----Hhhchhh-hhhcccc---hh
Confidence            44555555666666665  446654433332 122344567788888877663 10    0000000 0001111   11


Q ss_pred             HHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--CCccHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 037816          516 SFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD--SPAPYILMANIYSCSGRWKERAKAIKRMKEMGVD  593 (648)
Q Consensus       516 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~  593 (648)
                      +.+.+-...|-..+-..+..++.+.|+.++|++.++.+.+..|.  +..+...++.++...+++.++..++.+--+....
T Consensus       248 e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lp  327 (539)
T PF04184_consen  248 EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLP  327 (539)
T ss_pred             hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCC
Confidence            11111112233444455667777888888888888888877665  4567788888888888888888888886544443


Q ss_pred             CCCce
Q 037816          594 KETGI  598 (648)
Q Consensus       594 ~~~~~  598 (648)
                      .+..+
T Consensus       328 kSAti  332 (539)
T PF04184_consen  328 KSATI  332 (539)
T ss_pred             chHHH
Confidence            34333

The molecular function of this protein is uncertain.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=92.28  E-value=0.27  Score=29.81  Aligned_cols=27  Identities=19%  Similarity=0.049  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHh
Q 037816          529 VWQALLGACSIHGDSEMGKYAAEKLFL  555 (648)
Q Consensus       529 ~~~~l~~~~~~~g~~~~A~~~~~~~~~  555 (648)
                      +|..|...|.+.|++++|+.++++++.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~   27 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALA   27 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            467788888889999999999888553

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=92.23  E-value=0.26  Score=46.44  Aligned_cols=109  Identities=12%  Similarity=0.067  Sum_probs=77.2

Q ss_pred             HHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHc
Q 037816          465 LLHACSHVGLVNKGMEFLKSMTEVHRISP-RAEHYACVVDMVGRAGLLIEARSFIERMPVKPD---VLVWQALLGACSIH  540 (648)
Q Consensus       465 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~---~~~~~~l~~~~~~~  540 (648)
                      -.+-|.++|.+++|+..|.....   +.| |+.++..-..+|.+..++..|+.-.... +..|   ...|..-+.+-...
T Consensus       103 ~GN~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~A-iaLd~~Y~KAYSRR~~AR~~L  178 (536)
T KOG4648|consen  103 RGNTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAA-IALDKLYVKAYSRRMQARESL  178 (536)
T ss_pred             hhhhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHH-HHhhHHHHHHHHHHHHHHHHH
Confidence            35678899999999999998865   455 8888988899999999999888777665 1112   22344444444556


Q ss_pred             CChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHH
Q 037816          541 GDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERA  581 (648)
Q Consensus       541 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~  581 (648)
                      |...+|.+-++.++++.|.+...-    ..+.+.....|+.
T Consensus       179 g~~~EAKkD~E~vL~LEP~~~ELk----K~~a~i~Sl~E~~  215 (536)
T KOG4648|consen  179 GNNMEAKKDCETVLALEPKNIELK----KSLARINSLRERK  215 (536)
T ss_pred             hhHHHHHHhHHHHHhhCcccHHHH----HHHHHhcchHhhh
Confidence            788999999999999999965433    3333434444443

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.12  E-value=6.7  Score=35.43  Aligned_cols=76  Identities=9%  Similarity=-0.029  Sum_probs=40.1

Q ss_pred             HHHHhhhc-CCHHHHHHHHHhC-----CCCCCHHHHHHHHH---HHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHH
Q 037816          501 VVDMVGRA-GLLIEARSFIERM-----PVKPDVLVWQALLG---ACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIY  571 (648)
Q Consensus       501 l~~~~~~~-g~~~~A~~~~~~~-----~~~p~~~~~~~l~~---~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  571 (648)
                      +...|-.. .++++|+..|+..     +...+...-..++.   .-...+++.+|+.+|+++....-+++-.-..+-.-+
T Consensus       119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyf  198 (288)
T KOG1586|consen  119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYF  198 (288)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHH
Confidence            33444433 4566666666655     22222222233333   235668888888888888776666544444433334


Q ss_pred             HhcCC
Q 037816          572 SCSGR  576 (648)
Q Consensus       572 ~~~g~  576 (648)
                      .+.|-
T Consensus       199 lkAgL  203 (288)
T KOG1586|consen  199 LKAGL  203 (288)
T ss_pred             HHHHH
Confidence            44443

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=92.09  E-value=17  Score=37.83  Aligned_cols=181  Identities=14%  Similarity=0.088  Sum_probs=111.4

Q ss_pred             chhHHHHHHHHHHhCCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037816          392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAPR---NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHA  468 (648)
Q Consensus       392 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~  468 (648)
                      +..+|...+.--.+.|+.+.+.-.|++..-|   -...|--.+.-....|+.+-|..++....+-.++-.+.+-..-..-
T Consensus       296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f  375 (577)
T KOG1258|consen  296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF  375 (577)
T ss_pred             HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence            3456666666677778888888877776543   2233444444444458888777777666654332222221111122


Q ss_pred             HhccCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHhhhcCCHHHHH---HHHHhC-CCCCCHHHHHHHHHH-----HH
Q 037816          469 CSHVGLVNKGMEFLKSMTEVHRISPR-AEHYACVVDMVGRAGLLIEAR---SFIERM-PVKPDVLVWQALLGA-----CS  538 (648)
Q Consensus       469 ~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~l~~~-----~~  538 (648)
                      +-..|+++.|..+++.+.+.  . |+ ...-..-+....+.|..+.+.   +++... ..+-+..+...+.--     +.
T Consensus       376 ~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~  452 (577)
T KOG1258|consen  376 EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK  452 (577)
T ss_pred             HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence            35567899999999999874  3 43 333333455566777777777   444444 222233333333222     34


Q ss_pred             HcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcC
Q 037816          539 IHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSG  575 (648)
Q Consensus       539 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  575 (648)
                      -.++.+.|..++.++.+..|++...|..++....-.+
T Consensus       453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~  489 (577)
T KOG1258|consen  453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQP  489 (577)
T ss_pred             HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence            4688999999999999999999888888888777665

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.91  E-value=4.9  Score=38.28  Aligned_cols=153  Identities=13%  Similarity=0.028  Sum_probs=87.0

Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHh---CCCCchhHHHHHHHHHHhCCCHH
Q 037816          334 AQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS---DFTSNPFVNNGLINMYSKCGDLE  410 (648)
Q Consensus       334 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~  410 (648)
                      ...|+..+|...++++.+. .+.|...+...=.+|.-.|+...-...++++...   ++|-..++...+.-++..+|-++
T Consensus       114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~  192 (491)
T KOG2610|consen  114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD  192 (491)
T ss_pred             hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence            3567777777777777765 4666666666667777777777666666666532   33333344444555556677777


Q ss_pred             HHHHHHhhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 037816          411 DSIKVFSRMAPR---NSVSWNSMIAAFARHGNGFKALELYEEMKLE---GVEPTDVTFLSLLHACSHVGLVNKGMEFLKS  484 (648)
Q Consensus       411 ~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~---~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~  484 (648)
                      +|++.-++..+-   |.-.-.+....+-..|++.++.++..+-...   +.-.-...|-...-.+...+.++.|+++|+.
T Consensus       193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~  272 (491)
T KOG2610|consen  193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR  272 (491)
T ss_pred             hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence            777777666543   3334445555566667777776665543321   1000111222223334555677777777765


Q ss_pred             hHH
Q 037816          485 MTE  487 (648)
Q Consensus       485 ~~~  487 (648)
                      -.-
T Consensus       273 ei~  275 (491)
T KOG2610|consen  273 EIW  275 (491)
T ss_pred             HHH
Confidence            443

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=91.88  E-value=6.8  Score=33.80  Aligned_cols=134  Identities=7%  Similarity=-0.016  Sum_probs=75.9

Q ss_pred             HHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcC--ChhHHHHHhccc
Q 037816          140 FGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCG--SSSSGRKVFGEM  217 (648)
Q Consensus       140 ~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~  217 (648)
                      .++++.+.+.++.|+.. .+..++..+.+.|.......    ++..++-+|.......+-.+....  -..-|++.+.++
T Consensus        14 lEYirSl~~~~i~~~~~-L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL   88 (167)
T PF07035_consen   14 LEYIRSLNQHNIPVQHE-LYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRL   88 (167)
T ss_pred             HHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHh
Confidence            45556666677777776 77777777777776544333    334444455444333332222211  133444444444


Q ss_pred             CCCCcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHh
Q 037816          218 RVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKL  286 (648)
Q Consensus       218 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~  286 (648)
                      .    ..+..+++.+...|++-+|+++.+....    .+......++.+....+|...-..+++...+.
T Consensus        89 ~----~~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~  149 (167)
T PF07035_consen   89 G----TAYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEER  149 (167)
T ss_pred             h----hhHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3    3466677788888888888888877532    22223345566666666666555555555543

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=91.83  E-value=22  Score=38.65  Aligned_cols=193  Identities=9%  Similarity=0.017  Sum_probs=96.3

Q ss_pred             CChHHHHHHHHHHHhcCCChhHHHHhhccCC-CC--CcccHHHHHHHHH-hcCCchHHHHHHHHHHHcCCCCCc----Hh
Q 037816           86 PNATVIWNSLLSFYLKCDQMRNAVKLFDDMP-MR--DTVSWNTMVSGFL-RNGEFDMGFGFFKRSLELGFYQLD----QA  157 (648)
Q Consensus        86 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~--~~~~y~~li~~~~-~~g~~~~A~~~~~~m~~~~~~p~~----~~  157 (648)
                      +.+...|..||..-.++     ...+++... .|  ...++-.+...|. ...+++.|...+++.....-.++-    ..
T Consensus        27 ~~~l~~Y~kLI~~ai~C-----L~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~  101 (608)
T PF10345_consen   27 EEQLKQYYKLIATAIKC-----LEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFR  101 (608)
T ss_pred             hhhHHHHHHHHHHHHHH-----HHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHH
Confidence            44566677776653322     111111111 12  4556666666665 567788888888876543322111    11


Q ss_pred             HHHHHHHHhhccCChHHHHHHHHHHHHhC----CCCChhHHHHH-HHHhHhcCChhHHHHHhcccCC-------CCcccH
Q 037816          158 SFTIILSACDRSELSLVSKMIHCLVYLCG----YEEEVTVGNAL-ITSYFKCGSSSSGRKVFGEMRV-------RNVITW  225 (648)
Q Consensus       158 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~-------~~~~~~  225 (648)
                      .-..+++.+.+.+... |....+..++.-    ..+-...+.-+ +..+...++...|.+.++.+..       +-+..+
T Consensus       102 ~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~  180 (608)
T PF10345_consen  102 CQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVL  180 (608)
T ss_pred             HHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHH
Confidence            1223444455555444 666666655422    11222233333 2223333678878877776641       122233


Q ss_pred             HHHHHHHH--HCCCchHHHHHHHHHHhCCC---------CCChhhHHHHHHHh--hccCChHHHHHHHHHHH
Q 037816          226 TAVISGLV--QNQLYEEGLKLFVKMHLGLI---------NPNSLTYLSSVMAC--SGLQALCEGRQIHGILW  284 (648)
Q Consensus       226 ~~li~~~~--~~g~~~~a~~~~~~m~~~~~---------~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~  284 (648)
                      -.++.+..  ..+.++++++.++.+.....         .|-..+|..++..+  ...|+++.+...++.+.
T Consensus       181 ~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq  252 (608)
T PF10345_consen  181 ASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ  252 (608)
T ss_pred             HHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            33443333  34666777777776632211         23344566666654  34566667666666554

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=91.80  E-value=2.2  Score=36.18  Aligned_cols=117  Identities=13%  Similarity=0.095  Sum_probs=72.1

Q ss_pred             HHHHHHHH---HHhcCCChhHHHHhhccCC--CCCcccHHHH-HHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHH
Q 037816           90 VIWNSLLS---FYLKCDQMRNAVKLFDDMP--MRDTVSWNTM-VSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIIL  163 (648)
Q Consensus        90 ~~~~~li~---~~~~~g~~~~A~~~~~~~~--~~~~~~y~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll  163 (648)
                      .+.+.||.   .-.+.++.+++..+++.+.  +|.......+ ...+...|++.+|+.+|+++.+.+  |... ....|+
T Consensus         8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p-~~kALl   84 (160)
T PF09613_consen    8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFP-YAKALL   84 (160)
T ss_pred             HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCCh-HHHHHH
Confidence            34444444   4466789999999999886  5644433322 345688999999999999987765  5555 556666


Q ss_pred             HHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHH
Q 037816          164 SACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRK  212 (648)
Q Consensus       164 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  212 (648)
                      ..|.....-..-+..-+.+.+.+-.|+..   .|+..+....+...|..
T Consensus        85 A~CL~~~~D~~Wr~~A~evle~~~d~~a~---~Lv~~Ll~~~~~~~a~~  130 (160)
T PF09613_consen   85 ALCLYALGDPSWRRYADEVLESGADPDAR---ALVRALLARADLEPAHE  130 (160)
T ss_pred             HHHHHHcCChHHHHHHHHHHhcCCChHHH---HHHHHHHHhccccchhh
Confidence            66665555555555555566655333332   34555554444444433

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=91.76  E-value=27  Score=39.55  Aligned_cols=258  Identities=15%  Similarity=0.122  Sum_probs=131.6

Q ss_pred             CChHHHHHHHHHHHhcCC--ChhHHHHhhccCCC-CCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHH
Q 037816           86 PNATVIWNSLLSFYLKCD--QMRNAVKLFDDMPM-RDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII  162 (648)
Q Consensus        86 ~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~-~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~l  162 (648)
                      .|+ .-...+|.+|.+.+  .++.|+....+... +...+-...+..++-   +..+..+|+..+..-   |   .=..+
T Consensus       788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~~~~~~~ad~al~hll~---Lvdvn~lfn~ALgtY---D---l~Lal  857 (1265)
T KOG1920|consen  788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQLAQVAVSADEALKHLLF---LVDVNELFNSALGTY---D---LDLAL  857 (1265)
T ss_pred             Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHhcccchhHHHHHHHHHh---hccHHHHHHhhhccc---c---hHHHH
Confidence            555 44566777888777  66777776666652 211111111111111   112222333222100   0   00112


Q ss_pred             HHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccCCCCcccHHHHHHHHHHCCCchHHH
Q 037816          163 LSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGL  242 (648)
Q Consensus       163 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~  242 (648)
                      +-+-..+.|+.+-.-+++.+.+..  ++..-|  .|+.  ..++++.|+.-+.++.   ...|.-.++.--+.|.+.+|+
T Consensus       858 ~VAq~SqkDPkEyLP~L~el~~m~--~~~rkF--~ID~--~L~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL  928 (1265)
T KOG1920|consen  858 LVAQKSQKDPKEYLPFLNELKKME--TLLRKF--KIDD--YLKRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEAL  928 (1265)
T ss_pred             HHHHHhccChHHHHHHHHHHhhch--hhhhhe--eHHH--HHHHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhh
Confidence            222334455555555555554321  111111  1222  2467888887777765   345666677777888899998


Q ss_pred             HHHHHHHhCCCCCChhhHHHHHHHhh----ccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 037816          243 KLFVKMHLGLINPNSLTYLSSVMACS----GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFA  318 (648)
Q Consensus       243 ~~~~~m~~~~~~p~~~t~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  318 (648)
                      .++        +|+...+..+..+|+    ....+++|                      .-+|.++|+.++|.+     
T Consensus       929 ~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~A----------------------al~Ye~~GklekAl~-----  973 (1265)
T KOG1920|consen  929 ALY--------KPDSEKQKVIYEAYADHLREELMSDEA----------------------ALMYERCGKLEKALK-----  973 (1265)
T ss_pred             hee--------ccCHHHHHHHHHHHHHHHHHhccccHH----------------------HHHHHHhccHHHHHH-----
Confidence            876        466666655554443    33333333                      335667777777764     


Q ss_pred             cCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHH--HHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHH
Q 037816          319 EELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPN--MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVN  396 (648)
Q Consensus       319 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  396 (648)
                                   +|...|+|++|+.+-.++...   -|..  +-..|..-+...++.-+|-++..+....        .
T Consensus       974 -------------a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~ 1029 (1265)
T KOG1920|consen  974 -------------AYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------P 1029 (1265)
T ss_pred             -------------HHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------H
Confidence                         455677888888777766321   1111  1134445555566666665555444321        1


Q ss_pred             HHHHHHHHhCCCHHHHHHHHhhcCC
Q 037816          397 NGLINMYSKCGDLEDSIKVFSRMAP  421 (648)
Q Consensus       397 ~~li~~~~~~g~~~~A~~~~~~~~~  421 (648)
                      .-.+..|++...+++|..+-....+
T Consensus      1030 ~~av~ll~ka~~~~eAlrva~~~~~ 1054 (1265)
T KOG1920|consen 1030 EEAVALLCKAKEWEEALRVASKAKR 1054 (1265)
T ss_pred             HHHHHHHhhHhHHHHHHHHHHhccc
Confidence            2234456666777777776655543

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.66  E-value=10  Score=34.53  Aligned_cols=25  Identities=8%  Similarity=0.210  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHCCCchHHHHHHHHHH
Q 037816          225 WTAVISGLVQNQLYEEGLKLFVKMH  249 (648)
Q Consensus       225 ~~~li~~~~~~g~~~~a~~~~~~m~  249 (648)
                      |.....+|..+.++++|...+.+..
T Consensus        34 yekAAvafRnAk~feKakdcLlkA~   58 (308)
T KOG1585|consen   34 YEKAAVAFRNAKKFEKAKDCLLKAS   58 (308)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHH
Confidence            4445566666777777777666654

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.61  E-value=4.2  Score=34.76  Aligned_cols=119  Identities=13%  Similarity=0.064  Sum_probs=68.5

Q ss_pred             HHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHH-----HHHhhh
Q 037816          434 FARHGNGFKALELYEEMKLEGVEPTDV-TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV-----VDMVGR  507 (648)
Q Consensus       434 ~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~  507 (648)
                      +++.+..++|+.-|.++.+.|...=+. ..-.......+.|+...|...|+++-..   .|.+....-+     .-.+..
T Consensus        68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d---t~~P~~~rd~ARlraa~lLvD  144 (221)
T COG4649          68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD---TSIPQIGRDLARLRAAYLLVD  144 (221)
T ss_pred             HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc---CCCcchhhHHHHHHHHHHHhc
Confidence            456777888888888888876432221 1112233456778888888888888654   2322222211     223556


Q ss_pred             cCCHHHHHHHHHhCC--CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 037816          508 AGLLIEARSFIERMP--VKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFL  555 (648)
Q Consensus       508 ~g~~~~A~~~~~~~~--~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  555 (648)
                      .|.+++...-.+.+.  -.| -...-.+|.-+-.+.|++..|...|+.+..
T Consensus       145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            677777776666661  112 122334555556667777777777766654

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=91.60  E-value=0.4  Score=28.43  Aligned_cols=31  Identities=26%  Similarity=0.159  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 037816          529 VWQALLGACSIHGDSEMGKYAAEKLFLAQPD  559 (648)
Q Consensus       529 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  559 (648)
                      +|..+...|...|++++|...|+++++.+|+
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            4555666677777777777777777776663

...

>PF13762 MNE1: Mitochondrial splicing apparatus component

Probab=91.31  E-value=2.3  Score=35.43  Aligned_cols=115  Identities=12%  Similarity=0.179  Sum_probs=76.6

Q ss_pred             ccCCCcchhHHHHHHhhhcCCCCCcCcCCCCChH--HHHHHHHHHHhcCCChhHHHHhhccCC---------CCCcccHH
Q 037816           56 KEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNAT--VIWNSLLSFYLKCDQMRNAVKLFDDMP---------MRDTVSWN  124 (648)
Q Consensus        56 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~---------~~~~~~y~  124 (648)
                      ..|++....++|.+.+..  ..+-|+..+.+++.  ...|.++.-....+++...+.+++.+.         ..+-.+|+
T Consensus         6 k~g~~~~nL~~w~~fi~~--~~~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~   83 (145)
T PF13762_consen    6 KLGNVLANLEVWKTFINS--HLPYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFH   83 (145)
T ss_pred             cCcchhhhHHHHHHHHHH--HHHHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHH
Confidence            456666666777766666  44444444445554  345788887777788888888777775         12556788


Q ss_pred             HHHHHHHhcCC-chHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChH
Q 037816          125 TMVSGFLRNGE-FDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSL  173 (648)
Q Consensus       125 ~li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~  173 (648)
                      .++.+...... ---+..+|+.|++.+.+++.. .|..++.+|.+....+
T Consensus        84 ~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~-dy~~li~~~l~g~~~~  132 (145)
T PF13762_consen   84 IIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPS-DYSCLIKAALRGYFHD  132 (145)
T ss_pred             HHHHHHccChHHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCCCCc
Confidence            88888766555 445677778887777767777 7888888777664433

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=91.30  E-value=11  Score=37.52  Aligned_cols=66  Identities=15%  Similarity=0.266  Sum_probs=54.9

Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC----CCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816          525 PDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQP----DSPAPYILMANIYSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       525 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  590 (648)
                      ....+|..+...+.+.|.++.|...+.++...++    ..+.+....+..+...|+..+|+..++...+.
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~  213 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC  213 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3466788888999999999999999999887552    24677778889999999999999999988873

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=91.09  E-value=3.1  Score=36.42  Aligned_cols=101  Identities=10%  Similarity=-0.008  Sum_probs=67.0

Q ss_pred             HHhccCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHc
Q 037816          468 ACSHVGLVNKGMEFLKSMTEVHRISPR-----AEHYACVVDMVGRAGLLIEARSFIERM-PVKPDV-LVWQALLGACSIH  540 (648)
Q Consensus       468 ~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~  540 (648)
                      -+...|++++|..-|..+...  +++.     ...|..-.-++.+.+.++.|++-..+. .+.|+. .....-..+|.+.
T Consensus       104 ~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~  181 (271)
T KOG4234|consen  104 ELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM  181 (271)
T ss_pred             HhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence            356678888888888888763  3332     234555556777888888888777666 444431 1122223467788


Q ss_pred             CChHHHHHHHHHHHhcCCCCCccHHHHHHH
Q 037816          541 GDSEMGKYAAEKLFLAQPDSPAPYILMANI  570 (648)
Q Consensus       541 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  570 (648)
                      ..++.|+.-|+++++.+|....+-...+++
T Consensus       182 ek~eealeDyKki~E~dPs~~ear~~i~rl  211 (271)
T KOG4234|consen  182 EKYEEALEDYKKILESDPSRREAREAIARL  211 (271)
T ss_pred             hhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence            899999999999999999876554444443

>PRK09687 putative lyase; Provisional

Probab=90.69  E-value=16  Score=34.97  Aligned_cols=136  Identities=11%  Similarity=-0.054  Sum_probs=59.5

Q ss_pred             ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC-cHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 037816          423 NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVG-LVNKGMEFLKSMTEVHRISPRAEHYACV  501 (648)
Q Consensus       423 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l  501 (648)
                      +..+-...+.++.+.++ .++...+-.+.+   .+|...-...+.++...+ ....+...+..+..    .++..+-...
T Consensus       141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~~A  212 (280)
T PRK09687        141 STNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ----DKNEEIRIEA  212 (280)
T ss_pred             CHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc----CCChHHHHHH
Confidence            33333344444444444 344444444443   233333333444444332 12234444444432    2445555555


Q ss_pred             HHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHH
Q 037816          502 VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIY  571 (648)
Q Consensus       502 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  571 (648)
                      +.++++.|+..-.-.+.+.+. .++  .....+.++...|+. +|+..+.++.+..| |..+-....+++
T Consensus       213 ~~aLg~~~~~~av~~Li~~L~-~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~-d~~v~~~a~~a~  277 (280)
T PRK09687        213 IIGLALRKDKRVLSVLIKELK-KGT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFD-DNEIITKAIDKL  277 (280)
T ss_pred             HHHHHccCChhHHHHHHHHHc-CCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC-ChhHHHHHHHHH
Confidence            555666555322222223332 122  123445555666664 46666666665555 334444444433

>PRK09687 putative lyase; Provisional

Probab=90.38  E-value=17  Score=34.79  Aligned_cols=75  Identities=9%  Similarity=0.009  Sum_probs=40.1

Q ss_pred             CchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 037816          391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACS  470 (648)
Q Consensus       391 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~  470 (648)
                      ++..+-...+.++.+.|+......+.+.+..++  .....+.++...|.. +|...+..+.+..  ||...-...+.+|.
T Consensus       204 ~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~--~d~~v~~~a~~a~~  278 (280)
T PRK09687        204 KNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYKF--DDNEIITKAIDKLK  278 (280)
T ss_pred             CChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhC--CChhHHHHHHHHHh
Confidence            345555555666666666433333333333333  223456666666664 5777777776533  46655555555543

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=90.31  E-value=7.6  Score=37.43  Aligned_cols=62  Identities=16%  Similarity=0.133  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHcCCCcCH--HHHHHHHHHHhccCC--hhHHHHHHHHHHHhCCCCchhHHHHHHH
Q 037816          340 EEAMQLFVKMVKAGIEIDP--NMVSAVLGVFGVDTS--LGLGKQIHSLIIKSDFTSNPFVNNGLIN  401 (648)
Q Consensus       340 ~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~li~  401 (648)
                      +.+..+|+.+.+.|+..+.  ...+.++..+.....  ...+.++++.+.+.|+++....|..+.-
T Consensus       160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl  225 (297)
T PF13170_consen  160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL  225 (297)
T ss_pred             HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence            4666777788877765543  344444444333332  3477788888888898888877765543

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=90.02  E-value=3.7  Score=33.47  Aligned_cols=47  Identities=15%  Similarity=0.132  Sum_probs=20.7

Q ss_pred             hHHHHHHHHHHHh-cCCCC-CccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037816          543 SEMGKYAAEKLFL-AQPDS-PAPYILMANIYSCSGRWKERAKAIKRMKE  589 (648)
Q Consensus       543 ~~~A~~~~~~~~~-~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  589 (648)
                      ..+.+.+++.+.+ ..|.. ....+.++-++.+.|+|+.++++++.+.+
T Consensus        51 v~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~   99 (149)
T KOG3364|consen   51 VQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE   99 (149)
T ss_pred             HHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence            3344445555443 22221 22333444445555555555555555444

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=89.97  E-value=19  Score=34.57  Aligned_cols=21  Identities=5%  Similarity=-0.116  Sum_probs=16.9

Q ss_pred             HHHHHhcCChHHHHHHHHHHH
Q 037816          568 ANIYSCSGRWKERAKAIKRMK  588 (648)
Q Consensus       568 ~~~~~~~g~~~~A~~~~~~m~  588 (648)
                      +..+.+.++|++|.++|+-..
T Consensus       253 ~~~~~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  253 GKKHYKAKNYDEAIEWYELAL  273 (278)
T ss_pred             HHHHHhhcCHHHHHHHHHHHH
Confidence            445778999999999998654

It is also involved in sporulation [].

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=89.91  E-value=33  Score=37.27  Aligned_cols=56  Identities=13%  Similarity=0.233  Sum_probs=32.3

Q ss_pred             HHHHHhcCCChhHHHHhhccCC---CCCcccHHHHHHHHHhcCC-------chHHHHHHHHHHHcC
Q 037816           95 LLSFYLKCDQMRNAVKLFDDMP---MRDTVSWNTMVSGFLRNGE-------FDMGFGFFKRSLELG  150 (648)
Q Consensus        95 li~~~~~~g~~~~A~~~~~~~~---~~~~~~y~~li~~~~~~g~-------~~~A~~~~~~m~~~~  150 (648)
                      +|--|.|+|++++|.++..+..   ++....+-..+..|....+       -++...-|++..+..
T Consensus       117 ~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~  182 (613)
T PF04097_consen  117 LIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNS  182 (613)
T ss_dssp             HHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-
T ss_pred             HHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCC
Confidence            4556778888888888883333   3344556666777766432       235555666665554

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=89.73  E-value=0.47  Score=28.06  Aligned_cols=29  Identities=14%  Similarity=0.348  Sum_probs=25.1

Q ss_pred             ccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816          562 APYILMANIYSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       562 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  590 (648)
                      .++..++.++...|++++|++.+++..+.
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l   30 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            46788999999999999999999998774

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.51  E-value=4.7  Score=41.57  Aligned_cols=162  Identities=8%  Similarity=0.062  Sum_probs=96.6

Q ss_pred             CcccHHHHHHH-----HHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhH
Q 037816          119 DTVSWNTMVSG-----FLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTV  193 (648)
Q Consensus       119 ~~~~y~~li~~-----~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  193 (648)
                      ++.+|..++..     ....|+++.|-.++..+.+       . ....+...+.+.|..++|..+         .+|..-
T Consensus       580 nVi~y~l~l~vleyqt~vmrrd~~~a~~vLp~I~k-------~-~rt~va~Fle~~g~~e~AL~~---------s~D~d~  642 (794)
T KOG0276|consen  580 NVISYKILLEVLEYQTLVLRRDLEVADGVLPTIPK-------E-IRTKVAHFLESQGMKEQALEL---------STDPDQ  642 (794)
T ss_pred             ceEeEeeehHHHHHHHHhhhccccccccccccCch-------h-hhhhHHhHhhhccchHhhhhc---------CCChhh
Confidence            44555544433     3345666666665544332       1 445556666666666665544         333322


Q ss_pred             HHHHHHHhHhcCChhHHHHHhcccCCCCcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCCh
Q 037816          194 GNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQAL  273 (648)
Q Consensus       194 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~  273 (648)
                         -.....+.|+++.|.++..+..  +..-|..|.++..+.|++..|.+.|...+.         |..|+-.+...|+-
T Consensus       643 ---rFelal~lgrl~iA~~la~e~~--s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~  708 (794)
T KOG0276|consen  643 ---RFELALKLGRLDIAFDLAVEAN--SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNA  708 (794)
T ss_pred             ---hhhhhhhcCcHHHHHHHHHhhc--chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCCh
Confidence               1233456788888877765443  456688888888888998888888877754         55666677777776


Q ss_pred             HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 037816          274 CEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEF  317 (648)
Q Consensus       274 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  317 (648)
                      +....+-....+.|..      |.-.-+|...|+++++.+++.+
T Consensus       709 ~~l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~  746 (794)
T KOG0276|consen  709 EGLAVLASLAKKQGKN------NLAFLAYFLSGDYEECLELLIS  746 (794)
T ss_pred             hHHHHHHHHHHhhccc------chHHHHHHHcCCHHHHHHHHHh
Confidence            6665555555555422      2333445566666666666543

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=89.41  E-value=27  Score=35.64  Aligned_cols=175  Identities=8%  Similarity=0.004  Sum_probs=92.7

Q ss_pred             CchhHHHHHHHHHHhCCCHHHHHHHHhhcC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037816          391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMA--PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHA  468 (648)
Q Consensus       391 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~  468 (648)
                      .|.....+++..+....+..-++.+..+|.  ..+...|..++.+|... ..+.-..+|+++.+..  -|......-+.-
T Consensus        64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~ReLa~  140 (711)
T COG1747          64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGRELAD  140 (711)
T ss_pred             ccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHHHHHH
Confidence            344444555666666666666666666554  23555666666666666 4466666777666643  233333322222


Q ss_pred             HhccCcHHHHHHHHHHhHHhcCCCC------ChhHHHHHHHHhhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHH
Q 037816          469 CSHVGLVNKGMEFLKSMTEVHRISP------RAEHYACVVDMVGRAGLLIEARSFIERM----PVKPDVLVWQALLGACS  538 (648)
Q Consensus       469 ~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~  538 (648)
                      +...++.+.+..+|.++..+  +-|      -...|..|...-  ..+.+..+.+..++    +..--...+.-+-.-|.
T Consensus       141 ~yEkik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys  216 (711)
T COG1747         141 KYEKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS  216 (711)
T ss_pred             HHHHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence            33336666666666666653  333      122344333322  23444445444444    22222334444445566


Q ss_pred             HcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHH
Q 037816          539 IHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYS  572 (648)
Q Consensus       539 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  572 (648)
                      ...++.+|++++..+++.+..|..+...++.-+.
T Consensus       217 ~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lR  250 (711)
T COG1747         217 ENENWTEAIRILKHILEHDEKDVWARKEIIENLR  250 (711)
T ss_pred             cccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHH
Confidence            6677777777777777766666655555555443

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=89.20  E-value=3  Score=34.74  Aligned_cols=40  Identities=15%  Similarity=0.161  Sum_probs=18.5

Q ss_pred             HHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCC
Q 037816          537 CSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGR  576 (648)
Q Consensus       537 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  576 (648)
                      +...|++.+|+++++.+.+..+..+..-..++.++.-.|+
T Consensus        54 ~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D   93 (153)
T TIGR02561        54 LIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD   93 (153)
T ss_pred             HHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence            4445555555555555544444433333344444444444

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=89.03  E-value=40  Score=37.08  Aligned_cols=52  Identities=13%  Similarity=0.154  Sum_probs=29.2

Q ss_pred             HcCChHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 037816          436 RHGNGFKALELYEEMKLE----GVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTE  487 (648)
Q Consensus       436 ~~~~~~~A~~~~~~m~~~----~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~  487 (648)
                      ..|+++.|+++.+.....    -..+....+..+..+..-.|++++|..+.....+
T Consensus       470 ~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~  525 (894)
T COG2909         470 NRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQ  525 (894)
T ss_pred             hcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHH
Confidence            356666776666665542    1122334445555556666777777766665554

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.90  E-value=16  Score=32.23  Aligned_cols=88  Identities=14%  Similarity=0.066  Sum_probs=56.4

Q ss_pred             HHHhccCcHHHHHHHHHHhHHhcCCCCChhHH-----HHHHHHhhhcCCHHHHHHHHHhCCCCCC--HHHHHHHHHHHHH
Q 037816          467 HACSHVGLVNKGMEFLKSMTEVHRISPRAEHY-----ACVVDMVGRAGLLIEARSFIERMPVKPD--VLVWQALLGACSI  539 (648)
Q Consensus       467 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~p~--~~~~~~l~~~~~~  539 (648)
                      ..+...+++++|..-++.....    |.-..+     -.|.......|.+++|+..++... .++  ......-...+..
T Consensus        97 k~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~-~~~w~~~~~elrGDill~  171 (207)
T COG2976          97 KAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAALKTLDTIK-EESWAAIVAELRGDILLA  171 (207)
T ss_pred             HHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc-cccHHHHHHHHhhhHHHH
Confidence            4567778888888777766542    222222     234556777788888888887762 221  2223334456788


Q ss_pred             cCChHHHHHHHHHHHhcCCC
Q 037816          540 HGDSEMGKYAAEKLFLAQPD  559 (648)
Q Consensus       540 ~g~~~~A~~~~~~~~~~~p~  559 (648)
                      .|+-++|+..|+++++..+.
T Consensus       172 kg~k~~Ar~ay~kAl~~~~s  191 (207)
T COG2976         172 KGDKQEARAAYEKALESDAS  191 (207)
T ss_pred             cCchHHHHHHHHHHHHccCC
Confidence            88888888888888877643

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=88.78  E-value=6.8  Score=39.22  Aligned_cols=121  Identities=16%  Similarity=0.180  Sum_probs=59.4

Q ss_pred             HcCChHHHHHHHHH-HHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHH
Q 037816          436 RHGNGFKALELYEE-MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEA  514 (648)
Q Consensus       436 ~~~~~~~A~~~~~~-m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  514 (648)
                      ..|+...|-+-+.. +....-.|+.......|  ....|+++.+.+.+....+  -+.....+..++++...+.|++++|
T Consensus       301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a  376 (831)
T PRK15180        301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREA  376 (831)
T ss_pred             hccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHH
Confidence            44555555443333 33222233333332222  3455666666666665544  2334555556666666666666666


Q ss_pred             HHHHHhC-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 037816          515 RSFIERM-PVK-PDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS  560 (648)
Q Consensus       515 ~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~  560 (648)
                      ...-.-| +.. -++.............|-++++...+++++.++|+.
T Consensus       377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~  424 (831)
T PRK15180        377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET  424 (831)
T ss_pred             HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence            6665555 111 122222222223334455666666666666666553

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=88.73  E-value=10  Score=33.29  Aligned_cols=62  Identities=11%  Similarity=0.197  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 037816          426 SWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD--VTFLSLLHACSHVGLVNKGMEFLKSMTE  487 (648)
Q Consensus       426 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~  487 (648)
                      .+..+...|++.|+.+.|++.|.++.+....|..  ..+-.+|......+++..+...+.++..
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~  101 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES  101 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            4455566666666666666666666665433432  2345556666666666666666666554

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=88.60  E-value=72  Score=39.46  Aligned_cols=63  Identities=10%  Similarity=0.048  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037816          527 VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMG  591 (648)
Q Consensus       527 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  591 (648)
                      ..+|-...+.....|.++.|...+-.+.+..+  +.++...+..+...|+...|+.++++..+..
T Consensus      1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence            56788888888899999999998888877774  5688999999999999999999999988654

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=88.58  E-value=0.64  Score=27.54  Aligned_cols=29  Identities=24%  Similarity=0.377  Sum_probs=25.3

Q ss_pred             ccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816          562 APYILMANIYSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       562 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  590 (648)
                      .+|..++.+|...|++++|++.+++..+.
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~   30 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            46889999999999999999999998774

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=88.33  E-value=21  Score=33.02  Aligned_cols=255  Identities=15%  Similarity=0.141  Sum_probs=136.1

Q ss_pred             CCHHHHHHHHHhccCC-------CcccHHHHHHHHHHcCCHHHHHHHHHHHHHc---CC--CcCHHHHHHHHHHHhccCC
Q 037816          306 GSVEDAWQIFEFAEEL-------DGVSMTVILVGFAQNGFEEEAMQLFVKMVKA---GI--EIDPNMVSAVLGVFGVDTS  373 (648)
Q Consensus       306 ~~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~--~p~~~~~~~ll~~~~~~~~  373 (648)
                      ..+++|+.-|.++.+-       ...+...+|....+.+++++.+..+.+|..-   .+  .-+..+.+.++.-.+...+
T Consensus        41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~  120 (440)
T KOG1464|consen   41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN  120 (440)
T ss_pred             cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence            4556666666555431       1223345677777788888877777776431   11  2344556666666666666


Q ss_pred             hhHHHHHHHHHHH----h-CCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCC---------------ChhHHHHHHHH
Q 037816          374 LGLGKQIHSLIIK----S-DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR---------------NSVSWNSMIAA  433 (648)
Q Consensus       374 ~~~a~~~~~~~~~----~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------------~~~~~~~l~~~  433 (648)
                      .+...++++.-.+    . +-..--.+-+.|...|...|.+....+++.++...               -...|..-|..
T Consensus       121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm  200 (440)
T KOG1464|consen  121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM  200 (440)
T ss_pred             hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence            6655555443221    1 11111223345666777777887777777766421               13467777778


Q ss_pred             HHHcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHH-----hccCcHHHHHHHHHHhHHhcCC--CC---ChhHHHHHH
Q 037816          434 FARHGNGFKALELYEEMKLE-GVEPTDVTFLSLLHAC-----SHVGLVNKGMEFLKSMTEVHRI--SP---RAEHYACVV  502 (648)
Q Consensus       434 ~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~-----~~~g~~~~A~~~~~~~~~~~~~--~~---~~~~~~~l~  502 (648)
                      |...++-.....++++...- ..-|-+..... |+-|     .+.|.+++|-.-|-++.+.+.-  .|   +.--|..|.
T Consensus       201 YT~qKnNKkLK~lYeqalhiKSAIPHPlImGv-IRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLA  279 (440)
T KOG1464|consen  201 YTEQKNNKKLKALYEQALHIKSAIPHPLIMGV-IRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLA  279 (440)
T ss_pred             hhhhcccHHHHHHHHHHHHhhccCCchHHHhH-HHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHH
Confidence            88877777777778776542 22355444433 3333     5678888876555444442221  12   122355566


Q ss_pred             HHhhhcCC----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHH
Q 037816          503 DMVGRAGL----LIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYIL  566 (648)
Q Consensus       503 ~~~~~~g~----~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~  566 (648)
                      .++.+.|-    -.+|    +-.+..|.......++.+|.. ++..+-++++..-...--++|.+...
T Consensus       280 NMLmkS~iNPFDsQEA----KPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~~~~~IM~DpFIReh  342 (440)
T KOG1464|consen  280 NMLMKSGINPFDSQEA----KPYKNDPEILAMTNLVAAYQN-NDIIEFERILKSNRSNIMDDPFIREH  342 (440)
T ss_pred             HHHHHcCCCCCccccc----CCCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHHhhhccccccHHHHHH
Confidence            66666651    1111    011334556667788887754 44444444443333333344444433

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=88.15  E-value=16  Score=31.51  Aligned_cols=55  Identities=15%  Similarity=0.147  Sum_probs=30.6

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Q 037816          296 SALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMV  350 (648)
Q Consensus       296 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  350 (648)
                      ..++..+...|++-+|.++.+.....+......++.+-.+.++...-..+|+-..
T Consensus        93 ~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~  147 (167)
T PF07035_consen   93 EEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFE  147 (167)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3455566666777777766666544444455555555555555544444444433

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=88.05  E-value=5.4  Score=37.66  Aligned_cols=60  Identities=13%  Similarity=0.174  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 037816          427 WNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTE  487 (648)
Q Consensus       427 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~  487 (648)
                      +..++..+...|+.+.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+.+.+
T Consensus       156 l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~  215 (280)
T COG3629         156 LTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK  215 (280)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            3444455555555555555555555533 22555555555555555555555555555443

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=88.01  E-value=17  Score=34.39  Aligned_cols=55  Identities=11%  Similarity=-0.004  Sum_probs=26.0

Q ss_pred             CChhHHHHHHHHhHhcCChhHHHHHhcccC-----CCCcccHHHHHHHHHHCCCchHHHH
Q 037816          189 EEVTVGNALITSYFKCGSSSSGRKVFGEMR-----VRNVITWTAVISGLVQNQLYEEGLK  243 (648)
Q Consensus       189 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~  243 (648)
                      ++..+...++..+++.+++.+-.++++...     ..|...|..+|+.....|+..-..+
T Consensus       200 l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~k  259 (292)
T PF13929_consen  200 LTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRK  259 (292)
T ss_pred             CChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHH
Confidence            344444444555555555555555444332     1244455555555555555443333

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=87.81  E-value=3.8  Score=34.83  Aligned_cols=98  Identities=16%  Similarity=0.152  Sum_probs=56.9

Q ss_pred             hHHHHHHHHh---hhcCCHHHHHHHHHhC-CCCCCHHHHHHH-HHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHH
Q 037816          496 EHYACVVDMV---GRAGLLIEARSFIERM-PVKPDVLVWQAL-LGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI  570 (648)
Q Consensus       496 ~~~~~l~~~~---~~~g~~~~A~~~~~~~-~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  570 (648)
                      .+.+.|++..   .+.++.+++..++..+ -.+|.......+ ...+...|++.+|+.+++.+.+..|..+..-..++.+
T Consensus         8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C   87 (160)
T PF09613_consen    8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC   87 (160)
T ss_pred             HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence            3444444443   4566777887777777 445543333222 2346777888888888888777777666666666666


Q ss_pred             HHhcCChHHHHHHHHHHHhCCCCC
Q 037816          571 YSCSGRWKERAKAIKRMKEMGVDK  594 (648)
Q Consensus       571 ~~~~g~~~~A~~~~~~m~~~~~~~  594 (648)
                      +...|+.+ =..+-+++.+.+..|
T Consensus        88 L~~~~D~~-Wr~~A~evle~~~d~  110 (160)
T PF09613_consen   88 LYALGDPS-WRRYADEVLESGADP  110 (160)
T ss_pred             HHHcCChH-HHHHHHHHHhcCCCh
Confidence            66666532 122234445544433

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.77  E-value=16  Score=32.25  Aligned_cols=91  Identities=12%  Similarity=-0.002  Sum_probs=66.1

Q ss_pred             HHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHH-----HHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhc
Q 037816          500 CVVDMVGRAGLLIEARSFIERMPVKPDVLVWQAL-----LGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCS  574 (648)
Q Consensus       500 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l-----~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  574 (648)
                      .+...+..+|++++|+..++..--.|....+..+     .+.....|.+++|...++...+..= .+.....-++++...
T Consensus        94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~k  172 (207)
T COG2976          94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAK  172 (207)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHc
Confidence            3456788999999999999976223434444443     3556778999999888876533211 123455778899999


Q ss_pred             CChHHHHHHHHHHHhCC
Q 037816          575 GRWKERAKAIKRMKEMG  591 (648)
Q Consensus       575 g~~~~A~~~~~~m~~~~  591 (648)
                      |+-++|+..|++.+..+
T Consensus       173 g~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         173 GDKQEARAAYEKALESD  189 (207)
T ss_pred             CchHHHHHHHHHHHHcc
Confidence            99999999999998876

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.53  E-value=46  Score=36.00  Aligned_cols=31  Identities=10%  Similarity=0.266  Sum_probs=24.0

Q ss_pred             hHHHHHHHHHHhCCCHHHHHHHHhhcCCCCh
Q 037816          394 FVNNGLINMYSKCGDLEDSIKVFSRMAPRNS  424 (648)
Q Consensus       394 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~  424 (648)
                      ..-..|+..|...++++.|...+-....+++
T Consensus       506 ~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v  536 (846)
T KOG2066|consen  506 ALLEVLAHLYLYDNKYEKALPIYLKLQDKDV  536 (846)
T ss_pred             hHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence            3444588899999999999999888876543

>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases

Probab=87.32  E-value=0.65  Score=37.40  Aligned_cols=40  Identities=55%  Similarity=1.016  Sum_probs=33.4

Q ss_pred             ceeEEEEcCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCcccCCCCCCC
Q 037816          597 GISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYVPNKRFILH  648 (648)
Q Consensus       597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~g~~p~~~~~~~  648 (648)
                      |++|..+    +.|..++..||..        ++..+|...||.|+.+++++
T Consensus         2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~   41 (116)
T PF14432_consen    2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGH   41 (116)
T ss_pred             CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCC
Confidence            5788776    8999999999998        66677888899999887764

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=86.88  E-value=1.5  Score=25.57  Aligned_cols=26  Identities=19%  Similarity=0.137  Sum_probs=12.6

Q ss_pred             HHHHHHcCChHHHHHHHHHHHhcCCC
Q 037816          534 LGACSIHGDSEMGKYAAEKLFLAQPD  559 (648)
Q Consensus       534 ~~~~~~~g~~~~A~~~~~~~~~~~p~  559 (648)
                      ..++.+.|+.++|...++++++..|+
T Consensus         7 a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    7 ARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            33444445555555555555544443

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=86.82  E-value=8.9  Score=33.25  Aligned_cols=67  Identities=12%  Similarity=0.091  Sum_probs=39.6

Q ss_pred             CCCCC-HHHHHHHHHHHHHcC-----------ChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037816          522 PVKPD-VLVWQALLGACSIHG-----------DSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKE  589 (648)
Q Consensus       522 ~~~p~-~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  589 (648)
                      .+.|+ ..++..+..+|...+           .+++|...|+++...+|.+ ..|..-....      ++|-++..++.+
T Consensus        63 ~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n-e~Y~ksLe~~------~kap~lh~e~~~  135 (186)
T PF06552_consen   63 KINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN-ELYRKSLEMA------AKAPELHMEIHK  135 (186)
T ss_dssp             HH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHH------HTHHHHHHHHHH
T ss_pred             hcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc-HHHHHHHHHH------HhhHHHHHHHHH
Confidence            44565 345555555554332           2667777888888899998 5666555554      357888888887


Q ss_pred             CCCCCC
Q 037816          590 MGVDKE  595 (648)
Q Consensus       590 ~~~~~~  595 (648)
                      .+..+.
T Consensus       136 ~~~~~q  141 (186)
T PF06552_consen  136 QGLGQQ  141 (186)
T ss_dssp             SSS---
T ss_pred             HHhhhh
Confidence            765544

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=86.70  E-value=4.9  Score=30.59  Aligned_cols=63  Identities=14%  Similarity=0.247  Sum_probs=48.5

Q ss_pred             ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 037816          439 NGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVD  503 (648)
Q Consensus       439 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~  503 (648)
                      +.-++.+-++.+....+-|++....+.+++|.+.+++..|.++++.++.+.+  .+...|..+++
T Consensus        22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq   84 (103)
T cd00923          22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ   84 (103)
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence            3446666777777778899999999999999999999999999998886433  34556666554

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=86.51  E-value=5.1  Score=30.86  Aligned_cols=49  Identities=16%  Similarity=0.152  Sum_probs=36.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHH
Q 037816          521 MPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMAN  569 (648)
Q Consensus       521 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~  569 (648)
                      +..-|++....+.+++|.+.+|+..|+++++.+.....+....|..+++
T Consensus        39 ~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq   87 (108)
T PF02284_consen   39 YDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ   87 (108)
T ss_dssp             SSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred             cccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence            3677999999999999999999999999999998766655556766644

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>PRK10941 hypothetical protein; Provisional

Probab=86.44  E-value=6.2  Score=37.30  Aligned_cols=62  Identities=18%  Similarity=0.089  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037816          530 WQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMG  591 (648)
Q Consensus       530 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  591 (648)
                      .+.+-.+|.+.++++.|++..+.++...|+++.-+.--+-+|.+.|.+..|..-++...+.-
T Consensus       184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~  245 (269)
T PRK10941        184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC  245 (269)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence            45566778999999999999999999999999999999999999999999999999987753

>PRK11619 lytic murein transglycosylase; Provisional

Probab=86.39  E-value=55  Score=35.72  Aligned_cols=248  Identities=11%  Similarity=-0.009  Sum_probs=121.9

Q ss_pred             cCCHHHHHHHHHHHHHcC-CCcCHH--HHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHH
Q 037816          336 NGFEEEAMQLFVKMVKAG-IEIDPN--MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDS  412 (648)
Q Consensus       336 ~~~~~~a~~~~~~m~~~~-~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  412 (648)
                      ..+.+.|..++....... ..+...  ....+.......+....+...++......  .+......-+..-.+.++++.+
T Consensus       254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~  331 (644)
T PRK11619        254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL  331 (644)
T ss_pred             HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence            345577777777664332 222221  22222222222222444444444433221  2333444445555577777777


Q ss_pred             HHHHhhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcH-HHHHHHHHHhHHh
Q 037816          413 IKVFSRMAPR---NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLV-NKGMEFLKSMTEV  488 (648)
Q Consensus       413 ~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~-~~A~~~~~~~~~~  488 (648)
                      ...+..|.+.   ...-.-=+..++...|+.++|...|+.+..   ..   +|..++.+ .+.|.. .-.......-.. 
T Consensus       332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~~---~fYG~LAa-~~Lg~~~~~~~~~~~~~~~-  403 (644)
T PRK11619        332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---QR---GFYPMVAA-QRLGEEYPLKIDKAPKPDS-  403 (644)
T ss_pred             HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---CC---CcHHHHHH-HHcCCCCCCCCCCCCchhh-
Confidence            7777776521   122222245555557777777777777632   11   23222221 111110 000000000000 


Q ss_pred             cCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---CCCCccHH
Q 037816          489 HRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQ---PDSPAPYI  565 (648)
Q Consensus       489 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~  565 (648)
                       .+..+  .--.-+..+...|+...|...+..+....+......+.....+.|.++.++.........+   -.-|..|.
T Consensus       404 -~~~~~--~~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~  480 (644)
T PRK11619        404 -ALTQG--PEMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWN  480 (644)
T ss_pred             -hhccC--hHHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchH
Confidence             00000  1112345566778999998888777223455666666666778898888887776543211   11234566


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhCCCCCCC
Q 037816          566 LMANIYSCSGRWKERAKAIKRMKEMGVDKET  596 (648)
Q Consensus       566 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~  596 (648)
                      ..+..+.+.-.++.+.-.---..+.++.|..
T Consensus       481 ~~~~~~a~~~~v~~~lv~ai~rqES~f~p~a  511 (644)
T PRK11619        481 DEFRRYTSGKGIPQSYAMAIARQESAWNPKA  511 (644)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhcCCCCCC
Confidence            6767676666777766443344567777764

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=86.36  E-value=0.97  Score=24.91  Aligned_cols=24  Identities=13%  Similarity=0.205  Sum_probs=17.0

Q ss_pred             ccHHHHHHHHHhcCChHHHHHHHH
Q 037816          562 APYILMANIYSCSGRWKERAKAIK  585 (648)
Q Consensus       562 ~~~~~l~~~~~~~g~~~~A~~~~~  585 (648)
                      .+...++.++...|++++|..+++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            345667777777788877777664

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=86.28  E-value=1.3  Score=27.59  Aligned_cols=28  Identities=25%  Similarity=0.426  Sum_probs=21.9

Q ss_pred             ccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037816          562 APYILMANIYSCSGRWKERAKAIKRMKE  589 (648)
Q Consensus       562 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~  589 (648)
                      .++..++.+|...|++++|..++++..+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            3577888888888999988888888765

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=86.23  E-value=4.7  Score=30.65  Aligned_cols=48  Identities=19%  Similarity=0.144  Sum_probs=37.6

Q ss_pred             CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHH
Q 037816          522 PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMAN  569 (648)
Q Consensus       522 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~  569 (648)
                      ..-|++....+.+++|.+.+|+..|+++++.+......+...|..+..
T Consensus        37 DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lq   84 (103)
T cd00923          37 DLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQ   84 (103)
T ss_pred             ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHH
Confidence            677899999999999999999999999999887555544455655543

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=85.69  E-value=4.4  Score=31.18  Aligned_cols=60  Identities=13%  Similarity=0.189  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 037816          442 KALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVD  503 (648)
Q Consensus       442 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~  503 (648)
                      +..+-+..+....+-|++......+++|.+.+++..|.++++.++.+.+  +....|..+++
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq   87 (108)
T PF02284_consen   28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ   87 (108)
T ss_dssp             HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence            5556667777778899999999999999999999999999999988644  33447776664

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.51  E-value=23  Score=30.55  Aligned_cols=118  Identities=13%  Similarity=0.152  Sum_probs=70.4

Q ss_pred             HHhCCCHHHHHHHHhhcCCCChhHHHHHH-----HHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHH--HHHhccCc
Q 037816          403 YSKCGDLEDSIKVFSRMAPRNSVSWNSMI-----AAFARHGNGFKALELYEEMKLEGVEPTDV-TFLSLL--HACSHVGL  474 (648)
Q Consensus       403 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll--~~~~~~g~  474 (648)
                      +.+.+..++|+.-|..+.+.+.-.|..|.     ......|+...|...|++.-...-.|-.. -...|=  ..+...|.
T Consensus        68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs  147 (221)
T COG4649          68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS  147 (221)
T ss_pred             HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence            35667777777777777766555555443     23456677777777777776644333322 111221  22466777


Q ss_pred             HHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC
Q 037816          475 VNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM  521 (648)
Q Consensus       475 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  521 (648)
                      ++......+.+... +.+.....-..|.-+-.+.|++.+|.+.|..+
T Consensus       148 y~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qi  193 (221)
T COG4649         148 YDDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQI  193 (221)
T ss_pred             HHHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence            77777666666542 33334444455666666777777777777776

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=85.23  E-value=1.1  Score=26.04  Aligned_cols=28  Identities=18%  Similarity=0.267  Sum_probs=24.8

Q ss_pred             cHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816          563 PYILMANIYSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       563 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~  590 (648)
                      ++..++.++.+.|++++|.+.++++.+.
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~   29 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKR   29 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            4677899999999999999999999874

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=85.00  E-value=11  Score=33.09  Aligned_cols=94  Identities=16%  Similarity=0.094  Sum_probs=59.7

Q ss_pred             hHHHHHHHHHHhCCCHHHHHHHHhhcCCCC------hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH---
Q 037816          394 FVNNGLINMYSKCGDLEDSIKVFSRMAPRN------SVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLS---  464 (648)
Q Consensus       394 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~---  464 (648)
                      ..+..+...|++.|+.+.|.+.|.++.+..      ...+-.++......+++..+...+.+....-..+.......   
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk  116 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK  116 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            456678888888899999988888877542      34566677788888899888888877765322222221111   


Q ss_pred             HHHH--HhccCcHHHHHHHHHHhHH
Q 037816          465 LLHA--CSHVGLVNKGMEFLKSMTE  487 (648)
Q Consensus       465 ll~~--~~~~g~~~~A~~~~~~~~~  487 (648)
                      ...+  +...+++..|-+.|-....
T Consensus       117 ~~~gL~~l~~r~f~~AA~~fl~~~~  141 (177)
T PF10602_consen  117 VYEGLANLAQRDFKEAAELFLDSLS  141 (177)
T ss_pred             HHHHHHHHHhchHHHHHHHHHccCc
Confidence            1111  2345677777666665543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.94  E-value=8.1  Score=36.54  Aligned_cols=98  Identities=11%  Similarity=0.160  Sum_probs=68.1

Q ss_pred             hCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC-C--------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 037816          387 SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP-R--------NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP  457 (648)
Q Consensus       387 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p  457 (648)
                      .|.+....+...++..-....+++.++..+-+++. +        +.++|-.++    -.=++++++.++..=+..|+-|
T Consensus        58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqYGiF~  133 (418)
T KOG4570|consen   58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQYGIFP  133 (418)
T ss_pred             cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchhcccc
Confidence            34555555666666666666778888777766653 2        222332222    2335678888888888889999


Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 037816          458 TDVTFLSLLHACSHVGLVNKGMEFLKSMTEV  488 (648)
Q Consensus       458 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~  488 (648)
                      |..+++.+|+.+.+.+++..|.++.-.|...
T Consensus       134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q  164 (418)
T KOG4570|consen  134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ  164 (418)
T ss_pred             chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            9999999999999999998888887776553

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=84.45  E-value=2.1  Score=25.19  Aligned_cols=29  Identities=21%  Similarity=0.425  Sum_probs=25.8

Q ss_pred             ccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816          562 APYILMANIYSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       562 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  590 (648)
                      .+|..++.+|...|++++|.+.|++..+.
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~   30 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            46888999999999999999999998763

...

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=84.32  E-value=3.2  Score=39.52  Aligned_cols=86  Identities=17%  Similarity=0.152  Sum_probs=62.1

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhc-
Q 037816          431 IAAFARHGNGFKALELYEEMKLEGVEP-TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA-  508 (648)
Q Consensus       431 ~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-  508 (648)
                      ..-|.+.|.+++|+..|..-..  +.| |.+++..-..+|.+...+..|..-...+...         -...+.+|.+. 
T Consensus       104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL---------d~~Y~KAYSRR~  172 (536)
T KOG4648|consen  104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL---------DKLYVKAYSRRM  172 (536)
T ss_pred             hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh---------hHHHHHHHHHHH
Confidence            4568999999999999998877  457 8899988889999999998887776666542         12344555554 


Q ss_pred             ------CCHHHHHHHHHhC-CCCCCH
Q 037816          509 ------GLLIEARSFIERM-PVKPDV  527 (648)
Q Consensus       509 ------g~~~~A~~~~~~~-~~~p~~  527 (648)
                            |...+|.+-++.. .+.|+.
T Consensus       173 ~AR~~Lg~~~EAKkD~E~vL~LEP~~  198 (536)
T KOG4648|consen  173 QARESLGNNMEAKKDCETVLALEPKN  198 (536)
T ss_pred             HHHHHHhhHHHHHHhHHHHHhhCccc
Confidence                  5555665555555 566763

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=83.44  E-value=2.9  Score=37.82  Aligned_cols=82  Identities=12%  Similarity=0.049  Sum_probs=52.2

Q ss_pred             cCCHHHHHHHHHhC-CCCCCHHH-HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHH
Q 037816          508 AGLLIEARSFIERM-PVKPDVLV-WQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIK  585 (648)
Q Consensus       508 ~g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  585 (648)
                      ..++..|+..|.+. .+.|++.+ |..=+-++.+..+++.+..--.+++++.|+.......++..+.....+++|+..++
T Consensus        23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lq  102 (284)
T KOG4642|consen   23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQ  102 (284)
T ss_pred             hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence            34455555555544 55666533 34444456666777777777777777777777777777777777777777777777


Q ss_pred             HHHh
Q 037816          586 RMKE  589 (648)
Q Consensus       586 ~m~~  589 (648)
                      +..+
T Consensus       103 ra~s  106 (284)
T KOG4642|consen  103 RAYS  106 (284)
T ss_pred             HHHH
Confidence            6643

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=83.21  E-value=46  Score=32.17  Aligned_cols=146  Identities=15%  Similarity=0.138  Sum_probs=76.0

Q ss_pred             hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc--cC----cHHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHhhhcCCH
Q 037816          440 GFKALELYEEMKLEGVEPTDVTFLSLLHACSH--VG----LVNKGMEFLKSMTEVHRISP--RAEHYACVVDMVGRAGLL  511 (648)
Q Consensus       440 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~g----~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~  511 (648)
                      +++.+.+++.|.+.|++-+..+|.+.......  ..    ...+|..+|+.|++++.+--  +-..+..++..  ..++.
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~  155 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV  155 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence            45667788888999988887776653333322  22    35578899999998754433  33344444322  33433


Q ss_pred             ----HHHHHHHHhC---CCCC-CHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCCCCcc-HHHHHHHHHhcCChHH
Q 037816          512 ----IEARSFIERM---PVKP-DVLVWQALLGACSIHGD---SEMGKYAAEKLFLAQPDSPAP-YILMANIYSCSGRWKE  579 (648)
Q Consensus       512 ----~~A~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~-~~~l~~~~~~~g~~~~  579 (648)
                          ++++.+|+.+   ++.. |..-+.+-+-++.....   ..++.++++.+.+.+-.-... |..++-+..-.+..++
T Consensus       156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~  235 (297)
T PF13170_consen  156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEK  235 (297)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHH
Confidence                3445555554   4443 33333333333332222   446677777777655332233 4444433333333325


Q ss_pred             HHHHHHHH
Q 037816          580 RAKAIKRM  587 (648)
Q Consensus       580 A~~~~~~m  587 (648)
                      ..+.+.++
T Consensus       236 ~~~~i~ev  243 (297)
T PF13170_consen  236 IVEEIKEV  243 (297)
T ss_pred             HHHHHHHH
Confidence            44444444

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=83.07  E-value=3.5  Score=35.64  Aligned_cols=48  Identities=10%  Similarity=0.140  Sum_probs=34.8

Q ss_pred             ChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCC-----------hHHHHHHHHHHHh
Q 037816          542 DSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGR-----------WKERAKAIKRMKE  589 (648)
Q Consensus       542 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~m~~  589 (648)
                      .+++|+.-|++++.++|+...++..++.+|...|.           +++|.+.|++..+
T Consensus        50 miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~  108 (186)
T PF06552_consen   50 MIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD  108 (186)
T ss_dssp             HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh
Confidence            36677788888899999999999999999887654           4555556665555

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=82.75  E-value=1.4e+02  Score=37.30  Aligned_cols=95  Identities=7%  Similarity=-0.095  Sum_probs=44.7

Q ss_pred             HHHHHHCCCchHHHHHHHHHHhCCCCCC-hhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHH-HHHHHHHHhcC
Q 037816          229 ISGLVQNQLYEEGLKLFVKMHLGLINPN-SLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIE-SALMDMYSKCG  306 (648)
Q Consensus       229 i~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~  306 (648)
                      |-.....|++..|...|+.+.+.+  |+ ..+++.+++.....+.++...-..+.....- .+....+ +.=+.+--+.+
T Consensus      1456 il~~e~~g~~~da~~Cye~~~q~~--p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~ 1532 (2382)
T KOG0890|consen 1456 ILEHEASGNWADAAACYERLIQKD--PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLS 1532 (2382)
T ss_pred             HHHHHhhccHHHHHHHHHHhhcCC--CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhc
Confidence            334455666777777777665432  33 4456555555555555555444333222211 1111111 22222334555


Q ss_pred             CHHHHHHHHHhccCCCcccHHHH
Q 037816          307 SVEDAWQIFEFAEELDGVSMTVI  329 (648)
Q Consensus       307 ~~~~A~~~~~~~~~~~~~~~~~l  329 (648)
                      +++.......   +.+..+|...
T Consensus      1533 qwD~~e~~l~---~~n~e~w~~~ 1552 (2382)
T KOG0890|consen 1533 QWDLLESYLS---DRNIEYWSVE 1552 (2382)
T ss_pred             chhhhhhhhh---cccccchhHH
Confidence            5555555544   3444455443

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=82.04  E-value=12  Score=37.50  Aligned_cols=133  Identities=14%  Similarity=0.147  Sum_probs=84.6

Q ss_pred             HHHHHhCCCHHHHHHH-HhhcC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHH
Q 037816          400 INMYSKCGDLEDSIKV-FSRMA--PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVN  476 (648)
Q Consensus       400 i~~~~~~g~~~~A~~~-~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~  476 (648)
                      |.--...|++..|.+- +..+.  +.++.........+...|+++.+...+...... +.....+..++++.....|+++
T Consensus       296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~  374 (831)
T PRK15180        296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWR  374 (831)
T ss_pred             HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHH
Confidence            4444566777766543 44333  223333333444567789999999888776543 3456678889999999999999


Q ss_pred             HHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHH
Q 037816          477 KGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVK-PDVLVWQALLG  535 (648)
Q Consensus       477 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~  535 (648)
                      .|...-..|... .+ -++++...-...--..|-++++.-.|++. .+. |...-|...+.
T Consensus       375 ~a~s~a~~~l~~-ei-e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~  433 (831)
T PRK15180        375 EALSTAEMMLSN-EI-EDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLS  433 (831)
T ss_pred             HHHHHHHHHhcc-cc-CChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeec
Confidence            999999988763 33 24444433333344567788999888887 333 33333444443

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=81.93  E-value=4  Score=27.34  Aligned_cols=32  Identities=19%  Similarity=0.184  Sum_probs=25.8

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHhcCCCCCcc
Q 037816          532 ALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP  563 (648)
Q Consensus       532 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  563 (648)
                      .+.-++.+.|++++|.+..+.+++.+|++..+
T Consensus         6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa   37 (53)
T PF14853_consen    6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQA   37 (53)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence            45567899999999999999999999998543

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=81.77  E-value=6.2  Score=35.22  Aligned_cols=64  Identities=16%  Similarity=0.080  Sum_probs=46.7

Q ss_pred             HHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 037816          498 YACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSP  561 (648)
Q Consensus       498 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~  561 (648)
                      .+.-+..+.+.+.+.+|+...+.- +-+| |..+-..++..++-.|++++|..-++-+-++.|...
T Consensus         4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t   69 (273)
T COG4455           4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT   69 (273)
T ss_pred             hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence            444566777788888888877654 4455 455566677888888888888888888888887753

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=81.63  E-value=1.4  Score=37.32  Aligned_cols=84  Identities=14%  Similarity=0.110  Sum_probs=52.9

Q ss_pred             HHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccCCCCcccHHHHHHHHHHCCCchHH
Q 037816          162 ILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEG  241 (648)
Q Consensus       162 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a  241 (648)
                      ++..+...+.......+++.+...+...+....+.++..|++.++.++..++++....   .-...++..|.+.|.++++
T Consensus        13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a   89 (143)
T PF00637_consen   13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA   89 (143)
T ss_dssp             CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence            3445555556666666666666555456677788888888888877888888774332   3334556666666666666


Q ss_pred             HHHHHHH
Q 037816          242 LKLFVKM  248 (648)
Q Consensus       242 ~~~~~~m  248 (648)
                      .-++.++
T Consensus        90 ~~Ly~~~   96 (143)
T PF00637_consen   90 VYLYSKL   96 (143)
T ss_dssp             HHHHHCC
T ss_pred             HHHHHHc
Confidence            6666655

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>smart00028 TPR Tetratricopeptide repeats

Probab=81.57  E-value=2.9  Score=23.47  Aligned_cols=27  Identities=26%  Similarity=0.113  Sum_probs=11.9

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHhcCC
Q 037816          532 ALLGACSIHGDSEMGKYAAEKLFLAQP  558 (648)
Q Consensus       532 ~l~~~~~~~g~~~~A~~~~~~~~~~~p  558 (648)
                      .+...+...|+++.|...++++++..|
T Consensus         6 ~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        6 NLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            333444444444444444444444333

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=81.56  E-value=8.6  Score=34.11  Aligned_cols=70  Identities=16%  Similarity=0.090  Sum_probs=44.5

Q ss_pred             HHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC----CCccHHHHHHHHHhcCChHHHH
Q 037816          512 IEARSFIERMPVKP--DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD----SPAPYILMANIYSCSGRWKERA  581 (648)
Q Consensus       512 ~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~  581 (648)
                      ++|.+.|-.+...|  +....-..+..|....|.+++++++-+++++.++    |+.++.+|+..+.+.|+++.|-
T Consensus       123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  123 QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            45555555551111  2233333344455577888888888888765432    5778888888888888888774

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=81.50  E-value=2.4  Score=35.75  Aligned_cols=88  Identities=13%  Similarity=0.161  Sum_probs=65.6

Q ss_pred             HHHHHHHHhccCCCcchhHHHHHHhhhcCCCCCcCcCCCCChHHHHHHHHHHHhcCCChhHHHHhhccCCCCCcccHHHH
Q 037816           47 ISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTM  126 (648)
Q Consensus        47 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~y~~l  126 (648)
                      ...++..+.+.+.+......++.+...  +-        ..+....+.++..|++.++.+...++++....   .-...+
T Consensus        10 ~~~vi~~~~~~~~~~~l~~yLe~~~~~--~~--------~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~   76 (143)
T PF00637_consen   10 ISEVISAFEERNQPEELIEYLEALVKE--NK--------ENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKA   76 (143)
T ss_dssp             SCCCHHHCTTTT-GGGCTCCHHHHHHT--ST--------C-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhc--cc--------ccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHH
Confidence            345677888888899999999999876  44        56788999999999999888999999884432   444566


Q ss_pred             HHHHHhcCCchHHHHHHHHHH
Q 037816          127 VSGFLRNGEFDMGFGFFKRSL  147 (648)
Q Consensus       127 i~~~~~~g~~~~A~~~~~~m~  147 (648)
                      +..+.+.|.+++|.-+|.++.
T Consensus        77 ~~~c~~~~l~~~a~~Ly~~~~   97 (143)
T PF00637_consen   77 LRLCEKHGLYEEAVYLYSKLG   97 (143)
T ss_dssp             HHHHHTTTSHHHHHHHHHCCT
T ss_pred             HHHHHhcchHHHHHHHHHHcc
Confidence            777777777777777777643

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=81.11  E-value=4  Score=25.26  Aligned_cols=28  Identities=18%  Similarity=0.063  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 037816          528 LVWQALLGACSIHGDSEMGKYAAEKLFL  555 (648)
Q Consensus       528 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~  555 (648)
                      .+++.|...|...|++++|+.+++++++
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            5678888888899999999998888864

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=81.08  E-value=18  Score=30.37  Aligned_cols=99  Identities=10%  Similarity=0.094  Sum_probs=56.8

Q ss_pred             HHHHHHHHHH---HhcCCChhHHHHhhccCC--CCCcccHHHH-HHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHH
Q 037816           89 TVIWNSLLSF---YLKCDQMRNAVKLFDDMP--MRDTVSWNTM-VSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTII  162 (648)
Q Consensus        89 ~~~~~~li~~---~~~~g~~~~A~~~~~~~~--~~~~~~y~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~l  162 (648)
                      ..+.+.||..   -...++.+++..+++.|.  +|+..-...+ ...+...|++.+|+.+|++..+.+  +... .-..|
T Consensus         7 ~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~--~~~p-~~kAL   83 (153)
T TIGR02561         7 NRLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA--GAPP-YGKAL   83 (153)
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC--CCch-HHHHH
Confidence            3444445443   344789999999998886  5543322222 334578999999999999998875  3333 33344


Q ss_pred             HHHhhccCChHHHHHHHHHHHHhCCCCC
Q 037816          163 LSACDRSELSLVSKMIHCLVYLCGYEEE  190 (648)
Q Consensus       163 l~~~~~~~~~~~a~~~~~~~~~~~~~~~  190 (648)
                      +..|.....-..-...-..++..|-.|+
T Consensus        84 ~A~CL~al~Dp~Wr~~A~~~le~~~~~~  111 (153)
T TIGR02561        84 LALCLNAKGDAEWHVHADEVLARDADAD  111 (153)
T ss_pred             HHHHHHhcCChHHHHHHHHHHHhCCCHh
Confidence            4444443333333334444444443333

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=80.95  E-value=3.3  Score=26.40  Aligned_cols=27  Identities=19%  Similarity=0.273  Sum_probs=22.7

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037816          565 ILMANIYSCSGRWKERAKAIKRMKEMG  591 (648)
Q Consensus       565 ~~l~~~~~~~g~~~~A~~~~~~m~~~~  591 (648)
                      ..++.+|...|+.+.|.+++++....|
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~~~   29 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIEEG   29 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence            467889999999999999999987644

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>TIGR02508 type_III_yscG type III secretion protein, YscG family

Probab=80.59  E-value=24  Score=27.19  Aligned_cols=62  Identities=10%  Similarity=-0.005  Sum_probs=38.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHH
Q 037816          298 LMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS  362 (648)
Q Consensus       298 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~  362 (648)
                      -+..+...|++++|..+.+...-||..+|-+|-.  .+.|..+++...+.+|...| .|....|.
T Consensus        45 RlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa  106 (115)
T TIGR02508        45 RLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV  106 (115)
T ss_pred             HHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence            3445566777777777777777777777765544  35566666666666666655 44444443

YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=80.46  E-value=12  Score=34.01  Aligned_cols=64  Identities=16%  Similarity=0.100  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHcCChHH-------HHHHHHHHHhcC--CC----CCccHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037816          528 LVWQALLGACSIHGDSEM-------GKYAAEKLFLAQ--PD----SPAPYILMANIYSCSGRWKERAKAIKRMKEMG  591 (648)
Q Consensus       528 ~~~~~l~~~~~~~g~~~~-------A~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  591 (648)
                      ..+.-+.+.|...|+.+.       |.+.|+++.+..  |.    +......++.+..+.|++++|.++|.++...+
T Consensus       119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~  195 (214)
T PF09986_consen  119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK  195 (214)
T ss_pred             HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence            344555566777777444       444555554433  22    23567788999999999999999999997755

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=80.34  E-value=9.7  Score=34.05  Aligned_cols=78  Identities=12%  Similarity=0.043  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh-cCCCCChhHHHHHHHH
Q 037816          426 SWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEV-HRISPRAEHYACVVDM  504 (648)
Q Consensus       426 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~  504 (648)
                      +.+.-++.+.+.+...+|+...++-++.. +-|..+-..+++.+|-.|++++|..-++-.-+. ....+-..+|..+|.+
T Consensus         3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~   81 (273)
T COG4455           3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC   81 (273)
T ss_pred             chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence            44556777888899999999888877753 235556667788889999999998777766431 0223345566666653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	648
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	6e-10
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-04
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-04

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 61.4 bits (147), Expect = 6e-10
 Identities = 16/136 (11%), Positives = 41/136 (30%), Gaps = 7/136 (5%)

Query: 399 LINMYSKCGDLEDSIKVFSRMAPRNS-------VSWNSMIAAFARHGNGFKALELYEEMK 451
                     L  +  +      +           +N+++  +AR G   + + +   +K
Sbjct: 133 FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK 192

Query: 452 LEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLL 511
             G+ P  +++ + L            +E          +  +A   A ++    RA +L
Sbjct: 193 DAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVL 252

Query: 512 IEARSFIERMPVKPDV 527
                      + P +
Sbjct: 253 KAVHKVKPTFSLPPQL 268

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 49.8 bits (117), Expect = 3e-06
 Identities = 23/213 (10%), Positives = 67/213 (31%), Gaps = 8/213 (3%)

Query: 348 KMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQI---HSLIIKSDFTSNPFVNNGLINMYS 404
           +  +A +      + A      +   L L   +   H    +        + N ++  ++
Sbjct: 117 QHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWA 176

Query: 405 KCGDLEDSIKVFSRMA----PRNSVSWNSMIAAFARHGNGFKALELY-EEMKLEGVEPTD 459
           + G  ++ + V   +       + +S+ + +    R       +E   E+M  EG++   
Sbjct: 177 RQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQA 236

Query: 460 VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIE 519
           +    LL       ++    +   + +   ++ P       + D+  + G +   +  + 
Sbjct: 237 LFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLP 296

Query: 520 RMPVKPDVLVWQALLGACSIHGDSEMGKYAAEK 552
              ++        +  A  +   S        K
Sbjct: 297 LKTLQCLFEKQLHMELASRVCVVSVEKPTLPSK 329

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 2e-06
 Identities = 69/513 (13%), Positives = 136/513 (26%), Gaps = 160/513 (31%)

Query: 64  PSLHASFIKTFEPFDNQ-------------NVYNVPNATVIWNSLLSFYLKCDQMRNAVK 110
                +F+  F+  D Q             ++    +A     +L  F+    +    V+
Sbjct: 23  SVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS--GTLRLFWTLLSKQEEMVQ 80

Query: 111 LFDDMPMRDTVSW--------------NTMVSGFLRNGEFDMGFGFFKRS---------L 147
            F +  +R    +               T +    R+  ++    F K +         L
Sbjct: 81  KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL 140

Query: 148 ELGFYQLDQASFTII--LSACDRSELSLVSKMIHCLVYLCGYEEEV---TVGNALITSYF 202
                +L  A   +I  +    ++   +   +       C  + ++    + N       
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKT--WVALDVCLSYKVQCKMDFKIFWLNLKN------- 191

Query: 203 KCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGL-INPNSLTYL 261
            C S  +  ++  ++  +    WT+        +L    ++  ++  L      N L  L
Sbjct: 192 -CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250

Query: 262 SSVMACSGLQAL---CEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFA 318
            +V       A    C+      IL                 + ++   V D        
Sbjct: 251 LNVQNAKAWNAFNLSCK------IL-----------------LTTRFKQVTDF------- 280

Query: 319 EELDGVSMTVILVGFAQNGF-EEEAMQLFVKMVKAGIEIDPNMVSA----VLGVFGVDTS 373
             L   + T I +         +E   L +K +    +  P  V       L +      
Sbjct: 281 --LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR 338

Query: 374 LGLG-----KQI----HSLIIKSDFTS-NPFVNNGLINMYSKCGDLEDSIKVFSRMAPRN 423
            GL      K +     + II+S      P        M+ +      S  +     P  
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEP---AEYRKMFDRLSVFPPSAHI-----PT- 389

Query: 424 SVSWNSMIAAFARHGNGFKALELY-EEMKLEGVEPTDVTFLSLLHACSHVGLVNKG---- 478
                               L L   ++    V       ++ LH  S   LV K     
Sbjct: 390 ------------------ILLSLIWFDVIKSDVM----VVVNKLHKYS---LVEKQPKES 424

Query: 479 --------MEFLKS---MTEVHR--ISPRAEHY 498
                   +E          +HR  +    +HY
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSIV----DHY 453

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 43.3 bits (101), Expect = 2e-04
 Identities = 36/185 (19%), Positives = 65/185 (35%), Gaps = 15/185 (8%)

Query: 419 MAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKG 478
             P ++ S N++       GN  +A+ LY   K   V P          A S++  V + 
Sbjct: 4   SCPTHADSLNNLANIKREQGNIEEAVRLYR--KALEVFPEFA------AAHSNLASVLQQ 55

Query: 479 M----EFLKSMTEVHRISPR-AEHYACVVDMVGRAGLLIEARSFIER-MPVKPD-VLVWQ 531
                E L    E  RISP  A+ Y+ + + +     +  A     R + + P       
Sbjct: 56  QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHS 115

Query: 532 ALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMG 591
            L       G+      +       +PD P  Y  +A+       W +  + +K++  + 
Sbjct: 116 NLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIV 175

Query: 592 VDKET 596
            D+  
Sbjct: 176 ADQLE 180

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 14/113 (12%), Positives = 32/113 (28%), Gaps = 23/113 (20%)

Query: 340 EEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGL 399
            +A+  F +     I ++ +                     +   +  +   +  +   L
Sbjct: 21  GQAVSYFRQT----IALNIDRTEM----------------YYWTNVDKNSEISSKLATEL 60

Query: 400 INMYSKCGDLEDSIKVFSR---MAPRNSVSWNSMIAAFARHGNGFKALELYEE 449
              Y K  + + +   +      AP N     +        G    AL +YE+
Sbjct: 61  ALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEK 113

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	648
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.96
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.95
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.95
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.95
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.92
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.92
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.91
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.9
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.9
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.89
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.86
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.84
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.82
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.81
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.8
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.79
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.79
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.78
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.78
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.77
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.77
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.76
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.76
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.75
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.75
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.75
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.74
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.73
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.72
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.7
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.68
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.67
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.65
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.64
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.61
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.6
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.6
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.6
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.58
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.56
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.53
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.53
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.52
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.52
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.52
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.52
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.51
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.5
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.5
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.5
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.49
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.49
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.49
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.48
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.48
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.47
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.46
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.44
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.43
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.43
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.41
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.37
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.36
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.36
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.34
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.34
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.33
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.33
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.33
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.33
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.32
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.29
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.27
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.27
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.26
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.26
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.25
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.24
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.19
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.19
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.1
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.09
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.08
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.07
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.06
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.04
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.03
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.03
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.0
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.0
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.99
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.99
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.98
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.96
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.96
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.93
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.93
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.93
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.88
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.87
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.86
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.84
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.83
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.78
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.78
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.77
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.77
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.76
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.76
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.76
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.75
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.74
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.74
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.74
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.72
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.71
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.7
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.69
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.69
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.69
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.68
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.67
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.67
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.64
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.63
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.62
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.62
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.62
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.59
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.55
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.55
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.53
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.53
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.52
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.52
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.49
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.49
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.48
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.47
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.47
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.46
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.45
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.44
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.43
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.42
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.42
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.42
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.41
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.4
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.4
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.39
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.39
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.38
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.35
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.35
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.33
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.32
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.31
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.31
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.31
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.3
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.28
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.28
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.27
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.24
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.22
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.2
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.2
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.19
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.18
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.18
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.17
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.17
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.17
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.16
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.14
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.14
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.1
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.09
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.06
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.05
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.05
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.02
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.99
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.99
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.98
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.96
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.96
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.95
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.94
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.92
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.88
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.87
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.87
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.82
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.81
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.7
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.63
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.63
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.62
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.51
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.46
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	97.45
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.44
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.42
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.41
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.37
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.32
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.28
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	97.26
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.22
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.19
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	97.16
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.11
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.1
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.08
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	96.96
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	96.75
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.68
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.62
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.59
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.59
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	96.54
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.48
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.38
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.37
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.28
1pc2_A	152	Mitochondria fission protein; unknown function; NM	95.95
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	95.69
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.36
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	95.29
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	94.94
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	94.89
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	94.81
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	94.62
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	94.55
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	93.6
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	93.5
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	92.82
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	92.79
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	92.6
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	92.5
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	91.77
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	90.65
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	90.51
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	89.84
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	89.46
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	89.23
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	88.05
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	87.31
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	87.12
2qx5_A	661	Nucleoporin NIC96; mRNA transport, nuclear pore co	86.91
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	86.02
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	85.8
2p58_C	116	Putative type III secretion protein YSCG; type III	85.62
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	85.46
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	84.92
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	84.6
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	84.29
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	84.01
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	83.6
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	82.79
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	82.76
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	82.74
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	82.49
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	80.6

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.6e-40  Score=355.68  Aligned_cols=480  Identities=8%  Similarity=-0.039  Sum_probs=403.1

Q ss_pred             HhcCCChhHHHHhhccCCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHH
Q 037816           99 YLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMI  178 (648)
Q Consensus        99 ~~~~g~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~  178 (648)
                      +.+.|....+...+..++.+++..|+.++..|.+.|++++|+.+|++|.+..  |+.. ++..++.+|...|+++.|..+
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~-~~~~l~~~~~~~g~~~~A~~~  139 (597)
T 2xpi_A           63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDIT--GNPN-DAFWLAQVYCCTGDYARAKCL  139 (597)
T ss_dssp             -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CCHH-HHHHHHHHHHHTTCHHHHHHH
T ss_pred             ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhC--CCch-HHHHHHHHHHHcCcHHHHHHH
Confidence            4567778888888999888899999999999999999999999999998654  7777 899999999999999999999


Q ss_pred             HHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccCCC-------------------CcccHHHHHHHHHHCCCch
Q 037816          179 HCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVR-------------------NVITWTAVISGLVQNQLYE  239 (648)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~~  239 (648)
                      ++.+...  +++..+++.++.+|.+.|++++|.++|+++...                   +..+|+.++.+|.+.|+++
T Consensus       140 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  217 (597)
T 2xpi_A          140 LTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD  217 (597)
T ss_dssp             HHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHH
Confidence            9987643  678899999999999999999999999965433                   3778999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCCh-hhHHHHHHHhhccCChHHH--HHH-HHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 037816          240 EGLKLFVKMHLGLINPNS-LTYLSSVMACSGLQALCEG--RQI-HGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIF  315 (648)
Q Consensus       240 ~a~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~~a--~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  315 (648)
                      +|+++|++|.+.+  |+. ..+..+...+...+..+.+  ..+ +..+...+..+...+|+.++..|.+.|++++|.++|
T Consensus       218 ~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~  295 (597)
T 2xpi_A          218 RAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL  295 (597)
T ss_dssp             HHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence            9999999998743  543 3444444444333322221  111 444444455556667788889999999999999999


Q ss_pred             HhccC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCch
Q 037816          316 EFAEE--LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNP  393 (648)
Q Consensus       316 ~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~  393 (648)
                      +++.+  ++..+|+.++.+|.+.|++++|..+|+++.+.+ +.+..++..++.++.+.|++++|..+++.+.+.. +.+.
T Consensus       296 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~  373 (597)
T 2xpi_A          296 SSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKA  373 (597)
T ss_dssp             HTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSH
T ss_pred             HHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccH
Confidence            99987  788999999999999999999999999999876 4477889999999999999999999999999664 6788


Q ss_pred             hHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 037816          394 FVNNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACS  470 (648)
Q Consensus       394 ~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~  470 (648)
                      .++..++..|.+.|++++|.++|+++.   +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.
T Consensus       374 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~  452 (597)
T 2xpi_A          374 VTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHM  452 (597)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence            999999999999999999999999875   4578899999999999999999999999999865 457889999999999


Q ss_pred             ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHHcC
Q 037816          471 HVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-------PVKPD--VLVWQALLGACSIHG  541 (648)
Q Consensus       471 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~g  541 (648)
                      +.|++++|.++|+++.+.  .+.+..+|..++..|.+.|++++|.++|+++       +..|+  ..+|..++.+|.+.|
T Consensus       453 ~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g  530 (597)
T 2xpi_A          453 QLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK  530 (597)
T ss_dssp             HHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT
T ss_pred             HcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhc
Confidence            999999999999999874  3457899999999999999999999999988       44787  789999999999999


Q ss_pred             ChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816          542 DSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       542 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  590 (648)
                      ++++|+..++++.+..|+++.+|..++.+|.+.|++++|.++++++.+.
T Consensus       531 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~  579 (597)
T 2xpi_A          531 MYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI  579 (597)
T ss_dssp             CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999884

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.7e-39  Score=349.68  Aligned_cols=479  Identities=7%  Similarity=-0.037  Sum_probs=368.3

Q ss_pred             CcchHHHHHHHHhccCCCcchhHHHHHHhhhcCCCCCcCcCCCCChHHHHHHHHHHHhcCCChhHHHHhhccCC--CCCc
Q 037816           43 NYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQMRNAVKLFDDMP--MRDT  120 (648)
Q Consensus        43 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~  120 (648)
                      +...++.++..|.+.|++++|..+++.+...            .|+..++..++.+|.+.|++++|..+|+.+.  .++.
T Consensus        83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~------------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  150 (597)
T 2xpi_A           83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDI------------TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSS  150 (597)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCH
T ss_pred             HHHHHHHHHHHHHHccCchHHHHHHHHHHhh------------CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccch
Confidence            6777899999999999999999999998876            6777888889999999999999999999884  5688


Q ss_pred             ccHHHHHHHHHhcCCchHHHHHHHHHHHc---------------CCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHh
Q 037816          121 VSWNTMVSGFLRNGEFDMGFGFFKRSLEL---------------GFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLC  185 (648)
Q Consensus       121 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~---------------~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  185 (648)
                      .+++.++.+|.+.|++++|+.+|+++...               |. |....++..++.++.+.|++++|..+++.+.+.
T Consensus       151 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  229 (597)
T 2xpi_A          151 ACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGI-KLEASMCYLRGQVYTNLSNFDRAKECYKEALMV  229 (597)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSC-CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHhccCCcccccccccccccccccc-chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            88999999999999999999999853221               11 122348889999999999999999999999887


Q ss_pred             CCCCChhHHHHHHHHhHhcCChhHHHHH---hcccCC----CCcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChh
Q 037816          186 GYEEEVTVGNALITSYFKCGSSSSGRKV---FGEMRV----RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSL  258 (648)
Q Consensus       186 ~~~~~~~~~~~li~~~~~~g~~~~A~~~---~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~  258 (648)
                      + +.+...+..+...+...+..+.+...   +..+..    ....+|+.++..|.+.|++++|.++|+++.+.  +++..
T Consensus       230 ~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~  306 (597)
T 2xpi_A          230 D-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSD  306 (597)
T ss_dssp             C-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHH
T ss_pred             C-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHH
Confidence            5 44556666666665544433322211   222222    23345666778888888889999998888654  57888


Q ss_pred             hHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHH
Q 037816          259 TYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE---LDGVSMTVILVGFAQ  335 (648)
Q Consensus       259 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~  335 (648)
                      ++..++.++.+.|++++|.++++.+.+.+ +.+..+++.++.+|.+.|++++|.++++.+.+   .+..+|+.++..|.+
T Consensus       307 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  385 (597)
T 2xpi_A          307 LLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLC  385 (597)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Confidence            88888889999999999999998888766 44777888899999999999999999988754   367788889999999


Q ss_pred             cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHH
Q 037816          336 NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKV  415 (648)
Q Consensus       336 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  415 (648)
                      .|++++|.++|+++.+.. +.+..+|..++.++.+.|++++|.++++.+.+.+                           
T Consensus       386 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------------------------  437 (597)
T 2xpi_A          386 VNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF---------------------------  437 (597)
T ss_dssp             TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---------------------------
T ss_pred             hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------------------
Confidence            999999999999988753 2344555555555555555555555555544332                           


Q ss_pred             HhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCC
Q 037816          416 FSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH---RIS  492 (648)
Q Consensus       416 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~  492 (648)
                           +.+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|..++..|.+.|++++|.++|+++.+..   +..
T Consensus       438 -----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  511 (597)
T 2xpi_A          438 -----QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSN  511 (597)
T ss_dssp             -----TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred             -----ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccc
Confidence                 2355666777777777777777777777777654 3467778888888888888888888888876632   446


Q ss_pred             CC--hhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHH
Q 037816          493 PR--AEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA  568 (648)
Q Consensus       493 ~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~  568 (648)
                      |+  ..+|..++.+|.+.|++++|.+.++++ ...| +..+|..+..+|.+.|++++|.+.++++++.+|+++.++..++
T Consensus       512 p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~  591 (597)
T 2xpi_A          512 EKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLK  591 (597)
T ss_dssp             SGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence            66  678888899999999999999988887 3334 7889999999999999999999999999999999999999998


Q ss_pred             HHHH
Q 037816          569 NIYS  572 (648)
Q Consensus       569 ~~~~  572 (648)
                      .+|.
T Consensus       592 ~~~~  595 (597)
T 2xpi_A          592 RALE  595 (597)
T ss_dssp             HTTC
T ss_pred             HHHh
Confidence            8764

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.96  E-value=7.6e-26  Score=230.17  Aligned_cols=372  Identities=14%  Similarity=0.104  Sum_probs=256.1

Q ss_pred             HHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCC
Q 037816          127 VSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS  206 (648)
Q Consensus       127 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  206 (648)
                      ...+.+.|++++|+..++++.+..  |+....+..+...+...|+.+.|...++...+.. +.+...|..+..+|.+.|+
T Consensus         6 a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~   82 (388)
T 1w3b_A            6 AHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ   82 (388)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence            455677888888888888877664  6665455556666666777777777776666544 4455566666666666666


Q ss_pred             hhHHHHHhcccC--CC-CcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHH
Q 037816          207 SSSGRKVFGEMR--VR-NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGIL  283 (648)
Q Consensus       207 ~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~  283 (648)
                      +++|...|+++.  .| +..+|..+...+.+.|++++|.+.|+++.+.  .|+.                          
T Consensus        83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~--------------------------  134 (388)
T 1w3b_A           83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDL--------------------------  134 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTC--------------------------
T ss_pred             HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCc--------------------------
Confidence            666666666553  22 2334555555566666666666655555432  2222                          


Q ss_pred             HHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHH
Q 037816          284 WKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE--L-DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNM  360 (648)
Q Consensus       284 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~  360 (648)
                              ...+..+...+...|++++|.+.|+++..  | +..+|..+...+...|++++|...|+++.+.+       
T Consensus       135 --------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------  199 (388)
T 1w3b_A          135 --------YCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-------  199 (388)
T ss_dssp             --------THHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-------
T ss_pred             --------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------
Confidence                    22234444445555555555555544432  1 23344555555555555555555555555432       


Q ss_pred             HHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHc
Q 037816          361 VSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSMIAAFARH  437 (648)
Q Consensus       361 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~  437 (648)
                                                   +.+...+..+...+...|++++|...|.+..   +.+..++..+..+|...
T Consensus       200 -----------------------------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  250 (388)
T 1w3b_A          200 -----------------------------PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQ  250 (388)
T ss_dssp             -----------------------------TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             -----------------------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHc
Confidence                                         2334455556666666666666666666543   33566777888888888


Q ss_pred             CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHH
Q 037816          438 GNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSF  517 (648)
Q Consensus       438 ~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  517 (648)
                      |++++|+..++++.+.+ +.+..++..+..++.+.|++++|...++++.+.  .+.+..++..+...+.+.|++++|.+.
T Consensus       251 g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~  327 (388)
T 1w3b_A          251 GLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRL  327 (388)
T ss_dssp             TCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence            99999999999988854 335778888999999999999999999999874  456888999999999999999999999


Q ss_pred             HHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCC
Q 037816          518 IERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGR  576 (648)
Q Consensus       518 ~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  576 (648)
                      ++++ ...| +..++..+..++.+.|++++|+..++++++..|.++.+|..++.++...|+
T Consensus       328 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~  388 (388)
T 1w3b_A          328 YRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence            9988 5555 477899999999999999999999999999999999999999998887764

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.95  E-value=3.3e-25  Score=225.49  Aligned_cols=354  Identities=13%  Similarity=0.069  Sum_probs=298.7

Q ss_pred             HHHHHHCCCchHHHHHHHHHHhCCCCCCh-hhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCC
Q 037816          229 ISGLVQNQLYEEGLKLFVKMHLGLINPNS-LTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGS  307 (648)
Q Consensus       229 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  307 (648)
                      ...+.+.|++++|++.++.+.+.  .|+. ..+..+...+...|++++|...++...+.. +.+...+..+...|.+.|+
T Consensus         6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~   82 (388)
T 1w3b_A            6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ   82 (388)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence            45566778888888888777653  3443 344555556677788888888887777654 5667788889999999999


Q ss_pred             HHHHHHHHHhccC--C-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHH
Q 037816          308 VEDAWQIFEFAEE--L-DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI  384 (648)
Q Consensus       308 ~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~  384 (648)
                      +++|.+.|+++..  | +..+|..+..++...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+
T Consensus        83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  161 (388)
T 1w3b_A           83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA  161 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            9999999988764  3 34568888999999999999999999998864 334556677778888899999999999999


Q ss_pred             HHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH
Q 037816          385 IKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT  461 (648)
Q Consensus       385 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~  461 (648)
                      .+.. +.+..++..+...+.+.|++++|...|+++.   +.+...|..+...+...|++++|...+++..+.. +.+..+
T Consensus       162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~  239 (388)
T 1w3b_A          162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV  239 (388)
T ss_dssp             HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred             HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHH
Confidence            8875 5567889999999999999999999999875   3467789999999999999999999999998854 335788


Q ss_pred             HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHH
Q 037816          462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM--PVKPDVLVWQALLGACSI  539 (648)
Q Consensus       462 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~  539 (648)
                      +..+..++...|++++|...++++.+.  .+.+..++..+...|.+.|++++|.+.++++  ..+++..++..+...+..
T Consensus       240 ~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  317 (388)
T 1w3b_A          240 HGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE  317 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Confidence            999999999999999999999999873  3446788999999999999999999999998  334568899999999999


Q ss_pred             cCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816          540 HGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       540 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  590 (648)
                      .|++++|+..++++++..|++..++..++.+|.+.|++++|.+.++++.+.
T Consensus       318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  368 (388)
T 1w3b_A          318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI  368 (388)
T ss_dssp             TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred             cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999873

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.95  E-value=5.8e-27  Score=242.24  Aligned_cols=183  Identities=16%  Similarity=0.193  Sum_probs=158.9

Q ss_pred             cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCC---------hhHHHHHHHHHHHhCCCCchhH
Q 037816          325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTS---------LGLGKQIHSLIIKSDFTSNPFV  395 (648)
Q Consensus       325 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~  395 (648)
                      .++.+|.+|++.|++++|+++|++|.+.|++||..||+.+|.+|++.+.         ++.|.++|++|...|+.||..+
T Consensus        28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t  107 (501)
T 4g26_A           28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT  107 (501)
T ss_dssp             HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence            4666778888888888888888888888899999999999988876554         5778888999998899999999


Q ss_pred             HHHHHHHHHhCCCHHHHHHHHhhcC----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 037816          396 NNGLINMYSKCGDLEDSIKVFSRMA----PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSH  471 (648)
Q Consensus       396 ~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~  471 (648)
                      |++||.+|++.|++++|.++|++|.    .||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.||.+|++
T Consensus       108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~  187 (501)
T 4g26_A          108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD  187 (501)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence            9999999999999999999988885    578889999999999999999999999999999999999999999999999


Q ss_pred             cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhc
Q 037816          472 VGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA  508 (648)
Q Consensus       472 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  508 (648)
                      .|++++|.+++++|.+. +..|+..||+.++..|...
T Consensus       188 ~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          188 TKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             TTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred             CCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence            99999999999999886 8999999999888887653

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.95  E-value=3.5e-27  Score=243.94  Aligned_cols=211  Identities=10%  Similarity=0.080  Sum_probs=158.4

Q ss_pred             HHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhccc
Q 037816          138 MGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEM  217 (648)
Q Consensus       138 ~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~  217 (648)
                      .+..+.+++.+.++.+.....+..+|.+|++.|++++|..+++.|.+.|+.||..+||+||.+|++.+....+       
T Consensus         8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~-------   80 (501)
T 4g26_A            8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES-------   80 (501)
T ss_dssp             ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred             hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence            4455666777777655544478888999999999999999999999999999999999999998887764332       


Q ss_pred             CCCCcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHH
Q 037816          218 RVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESA  297 (648)
Q Consensus       218 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  297 (648)
                                     .+.+..++|.++|++|...|+.||..||+++|.+|++.|++++|.+++++|.+.|+.||..+|++
T Consensus        81 ---------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~  145 (501)
T 4g26_A           81 ---------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGP  145 (501)
T ss_dssp             ---------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             ---------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehH
Confidence                           12345678888999999999999999999999999999999999999999999999998888888


Q ss_pred             HHHHHHhcCCHHHHHHHHHhccC----CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhc
Q 037816          298 LMDMYSKCGSVEDAWQIFEFAEE----LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGV  370 (648)
Q Consensus       298 l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~  370 (648)
                      +|.+|++.|++++|.++|++|.+    ||..+|++||.+|++.|++++|.++|++|.+.|..|+..||+.++..|+.
T Consensus       146 lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s  222 (501)
T 4g26_A          146 ALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS  222 (501)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence            88888888887777777777653    56677777777777777777777777777777777777777777777664

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.92  E-value=5.8e-23  Score=217.19  Aligned_cols=239  Identities=12%  Similarity=-0.031  Sum_probs=135.1

Q ss_pred             cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 037816          325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYS  404 (648)
Q Consensus       325 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  404 (648)
                      .+..+...+...|++++|...|+++.+..  |+...+..+...+...|+++.|...++.+.+.. +.+..++..+...|.
T Consensus       239 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~  315 (514)
T 2gw1_A          239 SLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNF  315 (514)
T ss_dssp             HHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHH
Confidence            34455556666666666666666666543  225555556666666666666666666665543 334455556666666


Q ss_pred             hCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 037816          405 KCGDLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF  481 (648)
Q Consensus       405 ~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~  481 (648)
                      ..|++++|...|+++.   +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...
T Consensus       316 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~  394 (514)
T 2gw1_A          316 ILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQ  394 (514)
T ss_dssp             HTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            6666666666665543   2244555556666666666666666666665542 22345555556666666666666666


Q ss_pred             HHHhHHhcCCCCC----hhHHHHHHHHhhh---cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHH
Q 037816          482 LKSMTEVHRISPR----AEHYACVVDMVGR---AGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEK  552 (648)
Q Consensus       482 ~~~~~~~~~~~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~  552 (648)
                      ++++.+...-.++    ...+..+...|..   .|++++|.+.++++ ...| +..++..+..++...|++++|...+++
T Consensus       395 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  474 (514)
T 2gw1_A          395 YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEE  474 (514)
T ss_dssp             HHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            6665543111111    2255666666666   66666666666655 2222 345555566666666666666666666


Q ss_pred             HHhcCCCCCccHHHH
Q 037816          553 LFLAQPDSPAPYILM  567 (648)
Q Consensus       553 ~~~~~p~~~~~~~~l  567 (648)
                      +++..|.++..+..+
T Consensus       475 a~~~~~~~~~~~~~~  489 (514)
T 2gw1_A          475 SADLARTMEEKLQAI  489 (514)
T ss_dssp             HHHHCSSHHHHHHHH
T ss_pred             HHHhccccHHHHHHH
Confidence            666666655444433

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.92  E-value=6.5e-23  Score=216.84  Aligned_cols=261  Identities=8%  Similarity=-0.100  Sum_probs=223.5

Q ss_pred             HHHHHHHHHH---cCCHHHHHHHHHHHHH-----cCC--------CcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCC
Q 037816          326 MTVILVGFAQ---NGFEEEAMQLFVKMVK-----AGI--------EIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF  389 (648)
Q Consensus       326 ~~~li~~~~~---~~~~~~a~~~~~~m~~-----~~~--------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  389 (648)
                      +......+..   .|++++|...|+++.+     ...        +.+..++..+...+...|+++.|...++.+.+...
T Consensus       189 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~  268 (514)
T 2gw1_A          189 ELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP  268 (514)
T ss_dssp             HHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc
Confidence            3444444444   8999999999999987     311        22356777888889999999999999999998763


Q ss_pred             CCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037816          390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP---RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL  466 (648)
Q Consensus       390 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll  466 (648)
                      .  ...+..+...|...|++++|...++.+..   .+...+..+...+...|++++|...+++..+.. +.+...+..+.
T Consensus       269 ~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~  345 (514)
T 2gw1_A          269 R--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLA  345 (514)
T ss_dssp             C--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHH
T ss_pred             c--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHH
Confidence            3  88899999999999999999999988753   467789999999999999999999999999864 33667888899


Q ss_pred             HHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHH
Q 037816          467 HACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM----PVKPD----VLVWQALLGACS  538 (648)
Q Consensus       467 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~  538 (648)
                      ..+...|++++|...++++.+.  .+.+...+..+...|.+.|++++|.+.++++    +..++    ...+..+..++.
T Consensus       346 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~  423 (514)
T 2gw1_A          346 CLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLT  423 (514)
T ss_dssp             HHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHh
Confidence            9999999999999999999874  3447788999999999999999999999987    22232    448889999999


Q ss_pred             H---cCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037816          539 I---HGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMG  591 (648)
Q Consensus       539 ~---~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  591 (648)
                      .   .|++++|+..++++++..|.++.++..++.+|...|++++|.+.+++..+..
T Consensus       424 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  479 (514)
T 2gw1_A          424 RNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA  479 (514)
T ss_dssp             TSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             hhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence            9   9999999999999999999999999999999999999999999999998853

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.91  E-value=9.5e-22  Score=209.16  Aligned_cols=427  Identities=10%  Similarity=0.027  Sum_probs=219.4

Q ss_pred             ccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 037816          121 VSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITS  200 (648)
Q Consensus       121 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  200 (648)
                      ..|..+...+.+.|++++|+..|+++.+..  |+...++..+..++...|+++.|...++.+.+.+ +.+...+..+..+
T Consensus        26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~  102 (537)
T 3fp2_A           26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA  102 (537)
T ss_dssp             HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence            445666667777777777777777777654  5555567777777777777777777777777655 4556677777777


Q ss_pred             hHhcCChhHHHHHhcccCCCCcccHHHHHHHHHHCCCchHHHHHHHHHHhC------CCCCChhhHHHHHHHhhccCChH
Q 037816          201 YFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLG------LINPNSLTYLSSVMACSGLQALC  274 (648)
Q Consensus       201 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~p~~~t~~~ll~~~~~~~~~~  274 (648)
                      +...|++++|...|+.+. .+....+..+..+...+....|...++++...      ...|+......    +....+.+
T Consensus       103 ~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~  177 (537)
T 3fp2_A          103 NESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLAS----FFGIFDSH  177 (537)
T ss_dssp             HHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHH----HHHTSCHH
T ss_pred             HHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHH----HHHhcChH
Confidence            888888888888775332 22222233344455555567777777777442      12233222222    22222222


Q ss_pred             HHHHHHHHHHHhcCCCc-hhHHHHHHHHHHhc--------CCHHHHHHHHHhccCCCcc----------cHHHHHHHHHH
Q 037816          275 EGRQIHGILWKLALQSD-LCIESALMDMYSKC--------GSVEDAWQIFEFAEELDGV----------SMTVILVGFAQ  335 (648)
Q Consensus       275 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------~~~~~A~~~~~~~~~~~~~----------~~~~li~~~~~  335 (648)
                      .+...+....  ...+. ......+...+...        |++++|..+|+.+.+.++.          ++..+...+..
T Consensus       178 ~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~  255 (537)
T 3fp2_A          178 LEVSSVNTSS--NYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFL  255 (537)
T ss_dssp             HHHHTSCCCC--SSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcc--ccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHh
Confidence            2221111100  00111 11222222222221        3566666666666543221          24444455666


Q ss_pred             cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHH
Q 037816          336 NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKV  415 (648)
Q Consensus       336 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  415 (648)
                      .|++++|...|++..+..  |+...+..+...+...|+++.|...++.+.+.. +.+..++..+...+...|++++|...
T Consensus       256 ~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~  332 (537)
T 3fp2_A          256 KNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKED  332 (537)
T ss_dssp             TTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence            666666666666666543  345555566666666666666666666665544 33455555556666666666666666


Q ss_pred             HhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC
Q 037816          416 FSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRIS  492 (648)
Q Consensus       416 ~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~  492 (648)
                      |+++.   +.+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+...-.
T Consensus       333 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  411 (537)
T 3fp2_A          333 FQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ  411 (537)
T ss_dssp             HHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc
Confidence            55543   2234455555555556666666666665555542 2234455555555555566666666555554421000


Q ss_pred             C----ChhHHHHHHHHhhhc----------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 037816          493 P----RAEHYACVVDMVGRA----------GLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLA  556 (648)
Q Consensus       493 ~----~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  556 (648)
                      +    ....+..+...|.+.          |++++|...|+++ ...| +...+..+..+|...|++++|+..++++++.
T Consensus       412 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  491 (537)
T 3fp2_A          412 EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL  491 (537)
T ss_dssp             SSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            1    111122333444444          5555555555554 2222 3444555555555555555555555555555


Q ss_pred             CCCCC
Q 037816          557 QPDSP  561 (648)
Q Consensus       557 ~p~~~  561 (648)
                      .|.+.
T Consensus       492 ~~~~~  496 (537)
T 3fp2_A          492 ARTMD  496 (537)
T ss_dssp             C--CH
T ss_pred             CCCcH
Confidence            55543

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.90  E-value=8.4e-21  Score=197.00  Aligned_cols=303  Identities=12%  Similarity=0.028  Sum_probs=169.5

Q ss_pred             cHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 037816          224 TWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYS  303 (648)
Q Consensus       224 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  303 (648)
                      .+..+...+.+.|++++|+.+|+++.+. .+.+..++..+..++...|++++|...++.+.+.+ +.+..++..+..+|.
T Consensus        28 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~  105 (450)
T 2y4t_A           28 KHLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLL  105 (450)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH
Confidence            3444444444444444444444444331 11223334444444444444444444444444432 223344445555555


Q ss_pred             hcCCHHHHHHHHHhccCCCc------ccHHHH------------HHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 037816          304 KCGSVEDAWQIFEFAEELDG------VSMTVI------------LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVL  365 (648)
Q Consensus       304 ~~~~~~~A~~~~~~~~~~~~------~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll  365 (648)
                      +.|++++|.+.|+.+.+.++      ..+..+            ...+...|++++|+..|+++.+.. +.+...+..+.
T Consensus       106 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~  184 (450)
T 2y4t_A          106 KQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRA  184 (450)
T ss_dssp             HTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence            55555555555555443221      222222            334667777777777777777653 34566666777


Q ss_pred             HHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHH------------
Q 037816          366 GVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSM------------  430 (648)
Q Consensus       366 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l------------  430 (648)
                      .++...|++++|..+++.+.+.. +.+..++..+...|...|++++|...|+++.   +.+...+..+            
T Consensus       185 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  263 (450)
T 2y4t_A          185 ECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIES  263 (450)
T ss_dssp             HHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHH
Confidence            77777777777777777766553 4456666667777777777777777766654   2233333333            


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHh
Q 037816          431 IAAFARHGNGFKALELYEEMKLEGVEPT-----DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMV  505 (648)
Q Consensus       431 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~-----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~  505 (648)
                      ...+...|++++|...|+++.+..  |+     ...+..+..++.+.|++++|...++++.+.  .+.+...+..+..+|
T Consensus       264 ~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~  339 (450)
T 2y4t_A          264 AEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAY  339 (450)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence            566666777777777777776632  43     235566666667777777777777776653  233566666777777


Q ss_pred             hhcCCHHHHHHHHHhC-CCCCC-HHHHHHHH
Q 037816          506 GRAGLLIEARSFIERM-PVKPD-VLVWQALL  534 (648)
Q Consensus       506 ~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~  534 (648)
                      ...|++++|.+.++++ ...|+ ...+..+.
T Consensus       340 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  370 (450)
T 2y4t_A          340 LIEEMYDEAIQDYETAQEHNENDQQIREGLE  370 (450)
T ss_dssp             HHTTCHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence            7777777777777666 44454 34444444

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.90  E-value=5.9e-21  Score=198.19  Aligned_cols=325  Identities=11%  Similarity=0.006  Sum_probs=275.7

Q ss_pred             CChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHH
Q 037816          255 PNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE---LDGVSMTVILV  331 (648)
Q Consensus       255 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~  331 (648)
                      .+...+..+...+...|++++|..+++.+.+.. +.+...+..+..+|...|++++|...|+.+.+   .+...+..+..
T Consensus        24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  102 (450)
T 2y4t_A           24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGH  102 (450)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence            345678888899999999999999999998764 55788999999999999999999999998875   35667888999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCcCH----HHHHHH------------HHHHhccCChhHHHHHHHHHHHhCCCCchhH
Q 037816          332 GFAQNGFEEEAMQLFVKMVKAGIEIDP----NMVSAV------------LGVFGVDTSLGLGKQIHSLIIKSDFTSNPFV  395 (648)
Q Consensus       332 ~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  395 (648)
                      +|...|++++|...|+++.+..  |+.    ..+..+            ...+...|+++.|...++.+.+.. +.+..+
T Consensus       103 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~  179 (450)
T 2y4t_A          103 LLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAEL  179 (450)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence            9999999999999999998864  443    455444            344888999999999999999875 567888


Q ss_pred             HHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH-------
Q 037816          396 NNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSL-------  465 (648)
Q Consensus       396 ~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l-------  465 (648)
                      +..+..+|.+.|++++|...|+++.   +.+..+|..+...|...|++++|+..++++.+.. +.+...+..+       
T Consensus       180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~  258 (450)
T 2y4t_A          180 RELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLN  258 (450)
T ss_dssp             HHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHH
Confidence            9999999999999999999999875   4578899999999999999999999999999754 2244444444       


Q ss_pred             -----HHHHhccCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 037816          466 -----LHACSHVGLVNKGMEFLKSMTEVHRISPR-----AEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQAL  533 (648)
Q Consensus       466 -----l~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l  533 (648)
                           ...+...|++++|...|+++.+.   .|+     ...+..+...+.+.|++++|.+.++++ ...| +...|..+
T Consensus       259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l  335 (450)
T 2y4t_A          259 KLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDR  335 (450)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence                 78899999999999999999874   343     457889999999999999999999997 4445 68899999


Q ss_pred             HHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHH------------HHhcC-----ChHHHHHHHHHH
Q 037816          534 LGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI------------YSCSG-----RWKERAKAIKRM  587 (648)
Q Consensus       534 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~m  587 (648)
                      ..+|...|++++|+..++++++..|.++.++..++.+            |...|     +.+++.+.++++
T Consensus       336 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~  406 (450)
T 2y4t_A          336 AEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKL  406 (450)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHH
Confidence            9999999999999999999999999999999998843            55555     566777777763

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.89  E-value=1.7e-20  Score=199.45  Aligned_cols=426  Identities=11%  Similarity=0.046  Sum_probs=324.0

Q ss_pred             hHHHHHHHHHHHhcCCChhHHHHhhccCC---CCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHH
Q 037816           88 ATVIWNSLLSFYLKCDQMRNAVKLFDDMP---MRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILS  164 (648)
Q Consensus        88 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~  164 (648)
                      ....+..+...+.+.|++++|+..|+.+.   ..+..+|..+..+|.+.|++++|+..|+++.+.+  |+...++..+..
T Consensus        24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~  101 (537)
T 3fp2_A           24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRAS  101 (537)
T ss_dssp             HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHH
Confidence            35678888999999999999999999986   3478889999999999999999999999999876  777768999999


Q ss_pred             HhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccCCC------CcccHHHHHHHHHHCCCc
Q 037816          165 ACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVR------NVITWTAVISGLVQNQLY  238 (648)
Q Consensus       165 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~  238 (648)
                      ++...|+++.|...++.+..   .|+.  ....+..+...+....|...++.+...      ........+..+....+.
T Consensus       102 ~~~~~g~~~~A~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (537)
T 3fp2_A          102 ANESLGNFTDAMFDLSVLSL---NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS  176 (537)
T ss_dssp             HHHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred             HHHHcCCHHHHHHHHHHHhc---CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence            99999999999999963322   2222  222344566666778888888887532      222344556667777777


Q ss_pred             hHHHHHHHHHHhCCCCCChhhH-HHHHHHhhc--------cCChHHHHHHHHHHHHhcCCCc------hhHHHHHHHHHH
Q 037816          239 EEGLKLFVKMHLGLINPNSLTY-LSSVMACSG--------LQALCEGRQIHGILWKLALQSD------LCIESALMDMYS  303 (648)
Q Consensus       239 ~~a~~~~~~m~~~~~~p~~~t~-~~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~  303 (648)
                      +.+...+.....  ..+....+ ..+...+..        .|++++|..+++.+.+......      ..++..+...+.
T Consensus       177 ~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~  254 (537)
T 3fp2_A          177 HLEVSSVNTSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHF  254 (537)
T ss_dssp             HHHHHTSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHH
Confidence            776665544332  12222222 222222222        2478889999988876542211      235677778899


Q ss_pred             hcCCHHHHHHHHHhccC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHH
Q 037816          304 KCGSVEDAWQIFEFAEE--LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIH  381 (648)
Q Consensus       304 ~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~  381 (648)
                      ..|++++|...|+....  |+...+..+...+...|++++|...|++..+.. +.+..++..+...+...|+++.|...+
T Consensus       255 ~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~  333 (537)
T 3fp2_A          255 LKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDF  333 (537)
T ss_dssp             HTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            99999999999998865  556678888889999999999999999998875 456888999999999999999999999


Q ss_pred             HHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcC----
Q 037816          382 SLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG----  454 (648)
Q Consensus       382 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~----  454 (648)
                      +.+.+.. +.+...+..+...|...|++++|...|+++.   +.+...+..+...+...|++++|...++++.+..    
T Consensus       334 ~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~  412 (537)
T 3fp2_A          334 QKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE  412 (537)
T ss_dssp             HHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence            9999876 5567889999999999999999999998875   4467789999999999999999999999988643    


Q ss_pred             -CCCCHHHHHHHHHHHhcc----------CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-C
Q 037816          455 -VEPTDVTFLSLLHACSHV----------GLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-P  522 (648)
Q Consensus       455 -~~p~~~~~~~ll~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~  522 (648)
                       .......+......+...          |++++|...++++.+.  .+.+...+..+...|.+.|++++|.+.|++. .
T Consensus       413 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  490 (537)
T 3fp2_A          413 KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI  490 (537)
T ss_dssp             SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence             111222344555677777          9999999999999884  3447788999999999999999999999998 4


Q ss_pred             CCCC
Q 037816          523 VKPD  526 (648)
Q Consensus       523 ~~p~  526 (648)
                      ..|+
T Consensus       491 ~~~~  494 (537)
T 3fp2_A          491 LART  494 (537)
T ss_dssp             HC--
T ss_pred             hCCC
Confidence            4454

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.86  E-value=1.2e-18  Score=174.44  Aligned_cols=304  Identities=11%  Similarity=0.012  Sum_probs=206.6

Q ss_pred             hhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHH
Q 037816          258 LTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE---LDGVSMTVILVGFA  334 (648)
Q Consensus       258 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~  334 (648)
                      ..+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...|+.+.+   .+...+..+...+.
T Consensus         4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (359)
T 3ieg_A            4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL   82 (359)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence            345555566666666677766666666543 33455666666666666666666666665543   23345555666666


Q ss_pred             HcCCHHHHHHHHHHHHHcCCCc----CHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHH
Q 037816          335 QNGFEEEAMQLFVKMVKAGIEI----DPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLE  410 (648)
Q Consensus       335 ~~~~~~~a~~~~~~m~~~~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  410 (648)
                      ..|++++|...|++..+..  |    +...+..+.....                       ...+..+...+...|+++
T Consensus        83 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~  137 (359)
T 3ieg_A           83 KQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT  137 (359)
T ss_dssp             HHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred             HcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence            6666666666666665532  3    1222221111000                       011222356777788888


Q ss_pred             HHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 037816          411 DSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTE  487 (648)
Q Consensus       411 ~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~  487 (648)
                      +|...++++.   +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+
T Consensus       138 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  216 (359)
T 3ieg_A          138 AAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLK  216 (359)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            8888887764   3466777788888888888888888888888753 34677788888888888888888888888876


Q ss_pred             hcCCCCChhHHH------------HHHHHhhhcCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHHcCChHHHHHH
Q 037816          488 VHRISPRAEHYA------------CVVDMVGRAGLLIEARSFIERM-PVKPD-V----LVWQALLGACSIHGDSEMGKYA  549 (648)
Q Consensus       488 ~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~l~~~~~~~g~~~~A~~~  549 (648)
                      .  .+.+...+.            .+...+.+.|++++|.+.++++ ...|+ .    ..+..+..++...|++++|+..
T Consensus       217 ~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  294 (359)
T 3ieg_A          217 L--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRI  294 (359)
T ss_dssp             H--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             h--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence            4  222333332            2366788899999999999887 33344 2    2345567788899999999999


Q ss_pred             HHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816          550 AEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       550 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  590 (648)
                      ++++++..|.++.++..++.+|...|++++|.+.++++.+.
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~  335 (359)
T 3ieg_A          295 CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH  335 (359)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999998774

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.84  E-value=5.1e-18  Score=169.98  Aligned_cols=324  Identities=10%  Similarity=-0.005  Sum_probs=240.5

Q ss_pred             CcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 037816          221 NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMD  300 (648)
Q Consensus       221 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  300 (648)
                      |+..+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+..
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~   79 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH   79 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence            34567788899999999999999999997743 2456788888999999999999999999999875 446688999999


Q ss_pred             HHHhcCCHHHHHHHHHhccCCCc---c---cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCCh
Q 037816          301 MYSKCGSVEDAWQIFEFAEELDG---V---SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSL  374 (648)
Q Consensus       301 ~~~~~~~~~~A~~~~~~~~~~~~---~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~  374 (648)
                      ++...|++++|...|+.+.+.++   .   .+..+...+       .                ...+..+...+...|++
T Consensus        80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~----------------~~~~~~~a~~~~~~~~~  136 (359)
T 3ieg_A           80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKAD-------E----------------MQRLRSQALDAFDGADY  136 (359)
T ss_dssp             HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHTTCH
T ss_pred             HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHccCH
Confidence            99999999999999999877444   2   222221000       0                11122233445555666


Q ss_pred             hHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 037816          375 GLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMK  451 (648)
Q Consensus       375 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~  451 (648)
                      +.|...++.+.+.. +.+...+..+...+...|++++|...++++.   +.+...+..+...+...|++++|...+++..
T Consensus       137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~  215 (359)
T 3ieg_A          137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECL  215 (359)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            66666666555543 4455666667777777777777777777654   2356677777788888888888888888887


Q ss_pred             HcCCCCCHHHHH------------HHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh----hHHHHHHHHhhhcCCHHHHH
Q 037816          452 LEGVEPTDVTFL------------SLLHACSHVGLVNKGMEFLKSMTEVHRISPRA----EHYACVVDMVGRAGLLIEAR  515 (648)
Q Consensus       452 ~~~~~p~~~~~~------------~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~  515 (648)
                      +.. +.+...+.            .+...+...|++++|...++++.+. . +.+.    ..+..+...|...|++++|.
T Consensus       216 ~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~~~~la~~~~~~~~~~~A~  292 (359)
T 3ieg_A          216 KLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT-E-PSVAEYTVRSKERICHCFSKDEKPVEAI  292 (359)
T ss_dssp             HHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-C-CCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence            753 22333332            2356688899999999999999875 2 2222    33556788999999999999


Q ss_pred             HHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHh
Q 037816          516 SFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSC  573 (648)
Q Consensus       516 ~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  573 (648)
                      +.+++. ...| +...+..+..++...|++++|...++++++..|+++.++..+..+...
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~  352 (359)
T 3ieg_A          293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL  352 (359)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence            999988 4344 688899999999999999999999999999999998888888777654

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.82  E-value=7.3e-18  Score=166.74  Aligned_cols=287  Identities=9%  Similarity=0.016  Sum_probs=211.8

Q ss_pred             CCchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 037816          289 QSDLCIESALMDMYSKCGSVEDAWQIFEFAEE---LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVL  365 (648)
Q Consensus       289 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll  365 (648)
                      +.+..++..+...+...|++++|.++|+.+.+   .+...+..++.++...|++++|...++++.+.. +.+...+..+.
T Consensus        19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~   97 (330)
T 3hym_B           19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG   97 (330)
T ss_dssp             -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence            44455556666677777777777777776654   234455566677777778888888887777653 34556677777


Q ss_pred             HHHhccC-ChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChH
Q 037816          366 GVFGVDT-SLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGF  441 (648)
Q Consensus       366 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~  441 (648)
                      ..+...| +++.|...++.+.+.. +.+...+..+...+...|++++|...|+++.   +.+...+..+...|...|+++
T Consensus        98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~  176 (330)
T 3hym_B           98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK  176 (330)
T ss_dssp             HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence            7777777 7777888877777654 4456677778888888888888888887764   334566777888888888888


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC-------CCCChhHHHHHHHHhhhcCCHHHH
Q 037816          442 KALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHR-------ISPRAEHYACVVDMVGRAGLLIEA  514 (648)
Q Consensus       442 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A  514 (648)
                      +|...+++..+.. +.+...+..+...+...|++++|...++++.+...       .+....++..+...|...|++++|
T Consensus       177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  255 (330)
T 3hym_B          177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA  255 (330)
T ss_dssp             HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence            8888888888754 34567788888888888888888888888876411       133567888888888889999999


Q ss_pred             HHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHH-HhcCChH
Q 037816          515 RSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIY-SCSGRWK  578 (648)
Q Consensus       515 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~  578 (648)
                      .+.+++. ...| +...+..+..++...|++++|...++++++..|+++.++..++.++ ...|+.+
T Consensus       256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred             HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence            9888887 3333 5677888888888899999999999999998898888888888887 4556543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.81  E-value=5.3e-15  Score=161.86  Aligned_cols=410  Identities=11%  Similarity=0.046  Sum_probs=279.0

Q ss_pred             cCCcchhHhhHhH---Hh-hccccCCCccCC-CCcCCCcchHHHHHHHHhccCCCcchhHHHHHHhhhcCCCCCcCcCCC
Q 037816           11 NSNFPFCSSLVSP---FI-TKIIQDPTSSTS-KLVLDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNV   85 (648)
Q Consensus        11 ~~~~~~~~~l~~~---~~-~~~~~~~~~~~~-~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   85 (648)
                      ..+..-|..+++-   +. +..++..+.... ..   +|.-....++++...|.+.+|.++++.+.-.-..|        
T Consensus       950 r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~---~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~f-------- 1018 (1630)
T 1xi4_A          950 RKDPELWGSVLLESNPYRRPLIDQVVQTALSETQ---DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVF-------- 1018 (1630)
T ss_pred             hcCHHHHHHHhcCCcHHHHHHHHHHHHhhccccc---CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcc--------
Confidence            5777788887741   11 223333333222 33   44556788999999999999999999998441112        


Q ss_pred             CChHHHHHHHHHHHhcCCChhHHHHhhccCCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHH
Q 037816           86 PNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSA  165 (648)
Q Consensus        86 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~  165 (648)
                      ..+....+.|+.+..+. +..+..+..+....-+   ...+...+...|.+++|..+|++...     ... ....++. 
T Consensus      1019 s~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lglyEEAf~IYkKa~~-----~~~-A~~VLie- 1087 (1630)
T 1xi4_A         1019 SEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNELFEEAFAIFRKFDV-----NTS-AVQVLIE- 1087 (1630)
T ss_pred             cccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCCCHHHHHHHHHHcCC-----HHH-HHHHHHH-
Confidence            34567778788777766 4455555555554222   45577888889999999999998531     111 2233332 


Q ss_pred             hhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccCCCCcccHHHHHHHHHHCCCchHHHHHH
Q 037816          166 CDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLF  245 (648)
Q Consensus       166 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  245 (648)
                        ..++++.|.++.+..      .+..+|..+..++...|++++|.+.|.+.  .|...|..++..+.+.|++++|++.|
T Consensus      1088 --~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL 1157 (1630)
T 1xi4_A         1088 --HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYL 1157 (1630)
T ss_pred             --HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHH
Confidence              567788888877754      35778899999999999999999999765  56678888999999999999999999


Q ss_pred             HHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCccc
Q 037816          246 VKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVS  325 (648)
Q Consensus       246 ~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  325 (648)
                      ...++..  ++....+.++.+|++.++++....+.+       .++...+..+...|...|++++|..+|...     ..
T Consensus      1158 ~mArk~~--~e~~Idt~LafaYAKl~rleele~fI~-------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~n 1223 (1630)
T 1xi4_A         1158 QMARKKA--RESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SN 1223 (1630)
T ss_pred             HHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHHh-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hH
Confidence            8877644  443334458888888888886554431       345556667889999999999999999885     47


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 037816          326 MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSK  405 (648)
Q Consensus       326 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~  405 (648)
                      |..+..++.+.|++++|.+.+++.      .+..+|..+-.+|...|++..|......     +..++..+..++..|.+
T Consensus      1224 y~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~ 1292 (1630)
T 1xi4_A         1224 FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQD 1292 (1630)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHH
Confidence            888999999999999999998876      3457777777777777777766665432     33445566677777777


Q ss_pred             CCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHHc--CChHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHhccCc
Q 037816          406 CGDLEDSIKVFSRMAPR---NSVSWNSMIAAFARH--GNGFKALELYEEMKLEGVEP------TDVTFLSLLHACSHVGL  474 (648)
Q Consensus       406 ~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~--~~~~~A~~~~~~m~~~~~~p------~~~~~~~ll~~~~~~g~  474 (648)
                      .|.+++|+.+++....-   ....|+-|...|++-  ++..++.+.|..-.  +++|      +...|..++..|.+.|+
T Consensus      1293 ~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e 1370 (1630)
T 1xi4_A         1293 RGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEE 1370 (1630)
T ss_pred             cCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhccc
Confidence            77887777777665432   334555555555543  22333333333211  1222      34456666666667777


Q ss_pred             HHHHH
Q 037816          475 VNKGM  479 (648)
Q Consensus       475 ~~~A~  479 (648)
                      ++.|.
T Consensus      1371 ~dnA~ 1375 (1630)
T 1xi4_A         1371 YDNAI 1375 (1630)
T ss_pred             HHHHH
Confidence            76666

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.80  E-value=2.4e-17  Score=163.03  Aligned_cols=265  Identities=10%  Similarity=0.021  Sum_probs=231.9

Q ss_pred             CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHH
Q 037816          321 LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLI  400 (648)
Q Consensus       321 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li  400 (648)
                      .++..+..+...+...|++++|+.+|+++.+.. +.+...+..++.++...|++++|..+++.+.+.. +.+...+..+.
T Consensus        20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~   97 (330)
T 3hym_B           20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG   97 (330)
T ss_dssp             CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence            466677888889999999999999999998875 4455667777888899999999999999999875 56778899999


Q ss_pred             HHHHhCC-CHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHH
Q 037816          401 NMYSKCG-DLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVN  476 (648)
Q Consensus       401 ~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~  476 (648)
                      ..+...| ++++|...|++..   +.+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus        98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~  176 (330)
T 3hym_B           98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK  176 (330)
T ss_dssp             HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence            9999999 9999999999875   3467789999999999999999999999999865 334667777899999999999


Q ss_pred             HHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CC----------CCCHHHHHHHHHHHHHcCChHH
Q 037816          477 KGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PV----------KPDVLVWQALLGACSIHGDSEM  545 (648)
Q Consensus       477 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----------~p~~~~~~~l~~~~~~~g~~~~  545 (648)
                      +|...++++.+.  .+.+...+..+...|...|++++|...++++ ..          ..+..++..+..++...|++++
T Consensus       177 ~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  254 (330)
T 3hym_B          177 LAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE  254 (330)
T ss_dssp             HHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence            999999999873  4457889999999999999999999999887 11          3346789999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816          546 GKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       546 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  590 (648)
                      |+..++++++..|.++.++..++.++...|++++|.+.+++..+.
T Consensus       255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  299 (330)
T 3hym_B          255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL  299 (330)
T ss_dssp             HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred             HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence            999999999999999999999999999999999999999988653

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.79  E-value=4.8e-15  Score=162.26  Aligned_cols=471  Identities=11%  Similarity=0.061  Sum_probs=324.9

Q ss_pred             HHHHHHHhccCCCcchhHHHHHHhhhcCCCCCcCcCCCCChHHHHHHHHHHHhcCCC-hhHHHHhhccCCCCCcccHHHH
Q 037816           48 SRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQ-MRNAVKLFDDMPMRDTVSWNTM  126 (648)
Q Consensus        48 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~y~~l  126 (648)
                      .-|+..+-+..++.--.-.++.-...  |         ..++.++|+|...|...++ ++.-+.   +    |..-=..+
T Consensus       843 ~~lv~~~ekrnrLkll~p~LE~~~~~--g---------~~~~~~hnalakiyid~n~npe~fL~---~----n~~yd~~~  904 (1630)
T 1xi4_A          843 DELVAEVEKRNRLKLLLPWLEARIHE--G---------CEEPATHNALAKIYIDSNNNPERFLR---E----NPYYDSRV  904 (1630)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhC--C---------CCCHHHHHHHHHHHhccCCCHHHHhh---c----cCcccHHH
Confidence            33444444444444444445555555  5         5788999999999987653 333222   1    22211223


Q ss_pred             HHHHHhcCCchHHHHHHHH------HHHcCCCCCcHhHHHHHHHHhhccCChHH-----------HHHHHHHHHHhCC--
Q 037816          127 VSGFLRNGEFDMGFGFFKR------SLELGFYQLDQASFTIILSACDRSELSLV-----------SKMIHCLVYLCGY--  187 (648)
Q Consensus       127 i~~~~~~g~~~~A~~~~~~------m~~~~~~p~~~~~~~~ll~~~~~~~~~~~-----------a~~~~~~~~~~~~--  187 (648)
                      +.-||...++--|.-.|++      +.+  +.-.+. .|....+-+.+..+.+.           -+++.++.....+  
T Consensus       905 vgkyce~rDp~la~iay~~g~~d~eli~--vt~~n~-l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e  981 (1630)
T 1xi4_A          905 VGKYCEKRDPHLACVAYERGQCDLELIN--VCNENS-LFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSE  981 (1630)
T ss_pred             HHHHHHhcCcchHHHHhcccCCcHHHHH--HHhcch-hHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhccc
Confidence            3445555555544444432      000  011111 33333333333333332           2334444333222  


Q ss_pred             CCChhHHHHHHHHhHhcCChhHHHHHhcccCC-C-----CcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHH
Q 037816          188 EEEVTVGNALITSYFKCGSSSSGRKVFGEMRV-R-----NVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYL  261 (648)
Q Consensus       188 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~  261 (648)
                      ..++.--...+.+|...|.+.+|+++++++.. +     +...-+.++....+. +..+..+..+....       ....
T Consensus       982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~ 1053 (1630)
T 1xi4_A          982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAP 1053 (1630)
T ss_pred             ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHH
Confidence            23344446677888899999999999988862 2     224456677666666 55666666665532       1133


Q ss_pred             HHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHHcCCHHH
Q 037816          262 SSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEE  341 (648)
Q Consensus       262 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~  341 (648)
                      .+...+...|.+++|..+|+....     .....+.+   +-..+++++|.++.+++.  ++.+|..+..++.+.|++++
T Consensus      1054 eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VL---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kE 1123 (1630)
T 1xi4_A         1054 DIANIAISNELFEEAFAIFRKFDV-----NTSAVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKE 1123 (1630)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHH
Confidence            467778889999999999988631     11111222   337789999999998774  46788899999999999999


Q ss_pred             HHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC
Q 037816          342 AMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP  421 (648)
Q Consensus       342 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~  421 (648)
                      |++.|.+.      -|...|..++.++.+.|++++|.+++....+..  +++...+.++.+|++.+++++...+.   ..
T Consensus      1124 AIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~ 1192 (1630)
T 1xi4_A         1124 AIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NG 1192 (1630)
T ss_pred             HHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hC
Confidence            99999663      577888889999999999999999999888765  44444446899999999998755553   45


Q ss_pred             CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 037816          422 RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACV  501 (648)
Q Consensus       422 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l  501 (648)
                      ++...|..+...|...|++++|..+|...         ..|..+..++.+.|+++.|.+.+++.       .+..+|..+
T Consensus      1193 ~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-------~n~~aWkev 1256 (1630)
T 1xi4_A         1193 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEV 1256 (1630)
T ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHHHH
Confidence            56677778999999999999999999985         47889999999999999999999887       345889999


Q ss_pred             HHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhc--CChHH
Q 037816          502 VDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCS--GRWKE  579 (648)
Q Consensus       502 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~  579 (648)
                      ..+|...|++..|......  +..++..+..++..|.+.|.+++|+.+++.++.++|.....|..++.+|++.  ++..+
T Consensus      1257 ~~acve~~Ef~LA~~cgl~--Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmE 1334 (1630)
T 1xi4_A         1257 CFACVDGKEFRLAQMCGLH--IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMRE 1334 (1630)
T ss_pred             HHHHhhhhHHHHHHHHHHh--hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHH
Confidence            9999999999999987765  4456667778999999999999999999999999999988998888887754  55666


Q ss_pred             HHHHHHH
Q 037816          580 RAKAIKR  586 (648)
Q Consensus       580 A~~~~~~  586 (648)
                      +.++|..
T Consensus      1335 hlk~f~~ 1341 (1630)
T 1xi4_A         1335 HLELFWS 1341 (1630)
T ss_pred             HHHHHHH
Confidence            6666553

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.79  E-value=1.8e-17  Score=166.87  Aligned_cols=282  Identities=11%  Similarity=-0.028  Sum_probs=224.2

Q ss_pred             HHhcCCHHHHHH-HHHhccCC-------CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCC
Q 037816          302 YSKCGSVEDAWQ-IFEFAEEL-------DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTS  373 (648)
Q Consensus       302 ~~~~~~~~~A~~-~~~~~~~~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~  373 (648)
                      +.-.|++++|.+ .|++....       +...+..+...+...|++++|+..|+++.+.. +.+...+..+..++...|+
T Consensus        35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~  113 (368)
T 1fch_A           35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ  113 (368)
T ss_dssp             -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence            344578888888 77765431       34567888888999999999999999998864 5567788888888999999


Q ss_pred             hhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC--C-ChhHHHH---------------HHHHHH
Q 037816          374 LGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP--R-NSVSWNS---------------MIAAFA  435 (648)
Q Consensus       374 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~---------------l~~~~~  435 (648)
                      ++.|...++.+.+.. +.+..++..+...|...|++++|...|+++..  | +...+..               .+..+.
T Consensus       114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (368)
T 1fch_A          114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL  192 (368)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred             HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence            999999999988876 56778888899999999999999999987652  2 2222221               233344


Q ss_pred             HcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHH
Q 037816          436 RHGNGFKALELYEEMKLEGVEP-TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEA  514 (648)
Q Consensus       436 ~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  514 (648)
                      ..|++++|...++++.+..... +..++..+...+...|++++|...++++.+.  .+.+...+..+...|...|++++|
T Consensus       193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A  270 (368)
T 1fch_A          193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEA  270 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHH
Confidence            8899999999999999865211 4788999999999999999999999999874  344688999999999999999999


Q ss_pred             HHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-----------CccHHHHHHHHHhcCChHHHH
Q 037816          515 RSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS-----------PAPYILMANIYSCSGRWKERA  581 (648)
Q Consensus       515 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~  581 (648)
                      .+.++++ ...| +...+..+..+|...|++++|+..++++++..|.+           ..+|..++.+|...|++++|.
T Consensus       271 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  350 (368)
T 1fch_A          271 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG  350 (368)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence            9999998 4444 57889999999999999999999999999988877           789999999999999999999


Q ss_pred             HHHHHH
Q 037816          582 KAIKRM  587 (648)
Q Consensus       582 ~~~~~m  587 (648)
                      .++++.
T Consensus       351 ~~~~~~  356 (368)
T 1fch_A          351 AADARD  356 (368)
T ss_dssp             HHHTTC
T ss_pred             HhHHHH
Confidence            887643

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.78  E-value=1e-15  Score=160.27  Aligned_cols=365  Identities=10%  Similarity=0.004  Sum_probs=271.2

Q ss_pred             ChhHHHHHHHHhHh----cCChhHHHHHhcccCC-CCcccHHHHHHHHHH----CCCchHHHHHHHHHHhCCCCCChhhH
Q 037816          190 EVTVGNALITSYFK----CGSSSSGRKVFGEMRV-RNVITWTAVISGLVQ----NQLYEEGLKLFVKMHLGLINPNSLTY  260 (648)
Q Consensus       190 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~t~  260 (648)
                      +...+..+...|..    .+++++|...|+...+ .+...+..|...|..    .+++++|+++|++..+.|   +...+
T Consensus        38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~  114 (490)
T 2xm6_A           38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ  114 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred             CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence            45555556666665    6777777777766543 345566666677776    777777777777776643   44455


Q ss_pred             HHHHHHhhc----cCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhccC-CCcccHHHHHH
Q 037816          261 LSSVMACSG----LQALCEGRQIHGILWKLALQSDLCIESALMDMYSK----CGSVEDAWQIFEFAEE-LDGVSMTVILV  331 (648)
Q Consensus       261 ~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~li~  331 (648)
                      ..+...+..    .+++++|...++...+.|   +...+..|...|..    .++.++|.+.|++..+ .++..+..+..
T Consensus       115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~  191 (490)
T 2xm6_A          115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGY  191 (490)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            555555555    667778888777777665   45556667777776    6788888888877655 35666777777


Q ss_pred             HHHH----cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhc----cCChhHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 037816          332 GFAQ----NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGV----DTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMY  403 (648)
Q Consensus       332 ~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~  403 (648)
                      .|..    .++.++|+..|++..+.|   +...+..+...+..    .++.++|..+++...+.|   ++..+..+...|
T Consensus       192 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y  265 (490)
T 2xm6_A          192 MYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYIL  265 (490)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHH
T ss_pred             HHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence            7777    788899999998888765   45566666666664    788899999998888765   345666677777


Q ss_pred             Hh----CCCHHHHHHHHhhcCC-CChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 037816          404 SK----CGDLEDSIKVFSRMAP-RNSVSWNSMIAAFARH-----GNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVG  473 (648)
Q Consensus       404 ~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g  473 (648)
                      ..    .+++++|...|++..+ .+...+..+...|...     +++++|+..|++..+.|   +...+..+...+...|
T Consensus       266 ~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g  342 (490)
T 2xm6_A          266 EQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLG  342 (490)
T ss_dssp             HHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSC
T ss_pred             HCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCC
Confidence            77    8899999999988764 4667777888888877     89999999999998865   4556666777776655


Q ss_pred             ---cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCC
Q 037816          474 ---LVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR----AGLLIEARSFIERMPVKPDVLVWQALLGACSI----HGD  542 (648)
Q Consensus       474 ---~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~  542 (648)
                         ++++|.++|++..+.    .++..+..|...|..    .+++++|.+.|++.-...++..+..|...|..    .++
T Consensus       343 ~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d  418 (490)
T 2xm6_A          343 SEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERD  418 (490)
T ss_dssp             CHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCC
T ss_pred             CcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCC
Confidence               889999999999874    467788888999988    89999999999988223367788888888888    899


Q ss_pred             hHHHHHHHHHHHhcCCC---CCccHHHHHHHHHh
Q 037816          543 SEMGKYAAEKLFLAQPD---SPAPYILMANIYSC  573 (648)
Q Consensus       543 ~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~  573 (648)
                      .++|...|+++.+.+|+   ++.+...++.++..
T Consensus       419 ~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~  452 (490)
T 2xm6_A          419 YVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK  452 (490)
T ss_dssp             HHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred             HHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence            99999999999998854   66666666665543

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.78  E-value=1.9e-15  Score=159.89  Aligned_cols=421  Identities=10%  Similarity=-0.015  Sum_probs=272.7

Q ss_pred             HHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccCC--C
Q 037816          143 FKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV--R  220 (648)
Q Consensus       143 ~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~  220 (648)
                      |++..+..  |.+...|..++.. ...|+.+.|..+++.+.+.. +.+...|..++..+.+.|++++|..+|++...  |
T Consensus         2 le~al~~~--P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p   77 (530)
T 2ooe_A            2 AEKKLEEN--PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL   77 (530)
T ss_dssp             HHHHHHHC--TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC
T ss_pred             hhhHhhhC--CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Confidence            44444443  6666577777764 56777888888888777643 55666777777777777888888888877753  5


Q ss_pred             CcccHHHHHHHH-HHCCCchHHHH----HHHHHHh-CCCCCC-hhhHHHHHHHhhc---------cCChHHHHHHHHHHH
Q 037816          221 NVITWTAVISGL-VQNQLYEEGLK----LFVKMHL-GLINPN-SLTYLSSVMACSG---------LQALCEGRQIHGILW  284 (648)
Q Consensus       221 ~~~~~~~li~~~-~~~g~~~~a~~----~~~~m~~-~~~~p~-~~t~~~ll~~~~~---------~~~~~~a~~~~~~~~  284 (648)
                      +...|...+... ...|++++|.+    +|+.... .|..|+ ...|...+.....         .|+++.|..+|+..+
T Consensus        78 ~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al  157 (530)
T 2ooe_A           78 HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC  157 (530)
T ss_dssp             CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH
Confidence            555555555422 34566666654    5555533 244443 3344444443322         456666666666665


Q ss_pred             HhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHHcCCHHHHHHHHHHHH------HcC---CC
Q 037816          285 KLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMV------KAG---IE  355 (648)
Q Consensus       285 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~------~~~---~~  355 (648)
                      +.........|..........+. ..+..++.                 ...+++..|..++.++.      +..   ++
T Consensus       158 ~~P~~~~~~~~~~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~  219 (530)
T 2ooe_A          158 VNPMINIEQLWRDYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVP  219 (530)
T ss_dssp             TSCCTTHHHHHHHHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCC
T ss_pred             hchhhhHHHHHHHHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCC
Confidence            52111111222222111100000 00111110                 02344556666555532      111   24


Q ss_pred             cCH--------HHHHHHHHHHhc----cCCh----hHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-------CCCHH--
Q 037816          356 IDP--------NMVSAVLGVFGV----DTSL----GLGKQIHSLIIKSDFTSNPFVNNGLINMYSK-------CGDLE--  410 (648)
Q Consensus       356 p~~--------~~~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~--  410 (648)
                      |+.        ..|...+.....    .++.    ..+..+|+++.... +.++..|..++..+.+       .|+++  
T Consensus       220 p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a  298 (530)
T 2ooe_A          220 PQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNA  298 (530)
T ss_dssp             CC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHH
T ss_pred             CCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhh
Confidence            431        344443332221    1232    36777888888763 5677888888888775       78887  


Q ss_pred             -----HHHHHHhhcCC---C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-H-HHHHHHHHHHhccCcHHHHH
Q 037816          411 -----DSIKVFSRMAP---R-NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT-D-VTFLSLLHACSHVGLVNKGM  479 (648)
Q Consensus       411 -----~A~~~~~~~~~---~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~-~~~~~ll~~~~~~g~~~~A~  479 (648)
                           +|..+|++..+   | +...|..++..+.+.|++++|..+|+++.+.  .|+ . ..|..++..+.+.|++++|.
T Consensus       299 ~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~  376 (530)
T 2ooe_A          299 KLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGR  376 (530)
T ss_dssp             HHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHH
Confidence                 89999988763   3 5778999999999999999999999999984  464 3 47888888888999999999


Q ss_pred             HHHHHhHHhcCCCCChhHHHHHHHH-hhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 037816          480 EFLKSMTEVHRISPRAEHYACVVDM-VGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLA  556 (648)
Q Consensus       480 ~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  556 (648)
                      .+|++..+.  .+.+...|...+.. +...|+.++|..+|++. ...| +...|..++..+.+.|+.++|..+|++++..
T Consensus       377 ~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~  454 (530)
T 2ooe_A          377 MIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS  454 (530)
T ss_dssp             HHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence            999999873  22234444333322 34689999999999987 3344 5788999999999999999999999999998


Q ss_pred             CCCCCc----cHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816          557 QPDSPA----PYILMANIYSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       557 ~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~  590 (648)
                      .|.++.    +|...+......|+.+.+..+.+++.+.
T Consensus       455 ~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~  492 (530)
T 2ooe_A          455 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA  492 (530)
T ss_dssp             CCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            876665    7778888888899999999999998764

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.77  E-value=2.5e-17  Score=161.99  Aligned_cols=347  Identities=10%  Similarity=-0.001  Sum_probs=158.9

Q ss_pred             hcCChhHHHHHhcccCCCCcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHH
Q 037816          203 KCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGI  282 (648)
Q Consensus       203 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~  282 (648)
                      +.|++++|.+.++++..|+  +|..|+.++.+.|++++|++.|.+.      +|..+|..++.++...|++++|...++.
T Consensus        15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~   86 (449)
T 1b89_A           15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM   86 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            5678889999998886554  8889999999999999999988653      6777888889999889999999997777


Q ss_pred             HHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHH
Q 037816          283 LWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS  362 (648)
Q Consensus       283 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~  362 (648)
                      ..+.  .+++.+.+.|+.+|.+.|+++++.++++.   |+..+|..+...|...|++++|...|..+         ..|.
T Consensus        87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~  152 (449)
T 1b89_A           87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG  152 (449)
T ss_dssp             ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHH
T ss_pred             HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence            6663  44567788899999999999998877753   66778999999999999999999999876         3788


Q ss_pred             HHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHH
Q 037816          363 AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFK  442 (648)
Q Consensus       363 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  442 (648)
                      .+..++.+.|+++.|.+.+.++      .++.+|..++.+|...|+++.|......+. ..+.-...++..|.+.|++++
T Consensus       153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eE  225 (449)
T 1b89_A          153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEE  225 (449)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHH
Confidence            8999999999999999998887      378899999999999999999988777655 344445568889999999999


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC------ChhHHHHHHHHhhhcCCHHHHHH
Q 037816          443 ALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP------RAEHYACVVDMVGRAGLLIEARS  516 (648)
Q Consensus       443 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~  516 (648)
                      |..+++...... +--...|+-+.-++++- ++++..+.++....+-+++|      +...|..++-.|...++++.|..
T Consensus       226 ai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~  303 (449)
T 1b89_A          226 LITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII  303 (449)
T ss_dssp             HHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence            999999988654 34556666666655543 34444444444333335555      57789999999999999999988


Q ss_pred             HHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHH
Q 037816          517 FIERM-PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKR  586 (648)
Q Consensus       517 ~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  586 (648)
                      ..-+- +..-+...   ......+..+.|---+...-.++..   |...+.+..++...=+...+++.+++
T Consensus       304 tm~~h~~~a~~~~~---f~~~~~kv~n~elyYkai~fyl~~~---p~~l~~ll~~l~~~ld~~r~v~~~~~  368 (449)
T 1b89_A          304 TMMNHPTDAWKEGQ---FKDIITKVANVELYYRAIQFYLEFK---PLLLNDLLMVLSPRLDHTRAVNYFSK  368 (449)
T ss_dssp             HHHHSTTTTCCHHH---HHHHHHHCSSTHHHHHHHHHHHHHC---GGGHHHHHHHHGGGCCHHHHHHHHHH
T ss_pred             HHHhCChhhhhhHH---HHHHHhchhHHHHHHHHHHHHHhcC---HHHHHHHHHHHHhccCcHHHHHHHHH
Confidence            76554 22112222   2233334444442222222222222   23455555555555555555544443

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.77  E-value=1.8e-17  Score=163.10  Aligned_cols=284  Identities=9%  Similarity=0.055  Sum_probs=119.4

Q ss_pred             cCCChhHHHHhhccCCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHH
Q 037816          101 KCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHC  180 (648)
Q Consensus       101 ~~g~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~  180 (648)
                      +.|++++|.++++++..|  .+|..|..++.+.|++++|++.|.+.      ++.. +|..++.++...|++++|..+++
T Consensus        15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~-~y~~V~~~ae~~g~~EeAi~yl~   85 (449)
T 1b89_A           15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPS-SYMEVVQAANTSGNWEELVKYLQ   85 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHH-HHHHHHHHHHhCCCHHHHHHHHH
Confidence            678899999999999665  48999999999999999999999753      4555 89999999999999999999888


Q ss_pred             HHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccCCCCcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhH
Q 037816          181 LVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTY  260 (648)
Q Consensus       181 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~  260 (648)
                      ..++.  .+++.+.+.++.+|.+.|+++++.++++.   |+..+|+.+...|...|++++|..+|..+         ..|
T Consensus        86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~  151 (449)
T 1b89_A           86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF  151 (449)
T ss_dssp             -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCH
T ss_pred             HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence            77774  45678889999999999999999988864   77789999999999999999999999977         368


Q ss_pred             HHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHHcCCHH
Q 037816          261 LSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEE  340 (648)
Q Consensus       261 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~  340 (648)
                      ..+..++.+.|++++|.+.+..+      .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|+++
T Consensus       152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~e  224 (449)
T 1b89_A          152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFE  224 (449)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHH
Confidence            88888888888888888888877      367888888888888888888877666654 33344456777888888888


Q ss_pred             HHHHHHHHHHHcCCCcCHHHHHHHHHHHhcc--CChhHHHHHHHHHHHhCCCC------chhHHHHHHHHHHhCCCHHHH
Q 037816          341 EAMQLFVKMVKAGIEIDPNMVSAVLGVFGVD--TSLGLGKQIHSLIIKSDFTS------NPFVNNGLINMYSKCGDLEDS  412 (648)
Q Consensus       341 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A  412 (648)
                      +|+.+++...... +-....|+-+..++++-  +++.+..+.|.  .+.+++|      +...|.-++..|...++++.|
T Consensus       225 Eai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~--~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A  301 (449)
T 1b89_A          225 ELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW--SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA  301 (449)
T ss_dssp             HHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS--TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHH
Confidence            8888888876544 44455566555555543  22333333222  1222222      345566666666677777666


Q ss_pred             HHHHh
Q 037816          413 IKVFS  417 (648)
Q Consensus       413 ~~~~~  417 (648)
                      ..+.-
T Consensus       302 ~~tm~  306 (449)
T 1b89_A          302 IITMM  306 (449)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            65443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.76  E-value=3e-17  Score=165.00  Aligned_cols=261  Identities=10%  Similarity=-0.072  Sum_probs=214.7

Q ss_pred             CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHH
Q 037816          322 DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLIN  401 (648)
Q Consensus       322 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~  401 (648)
                      +...+..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+..++..+..
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~  141 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV  141 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence            44558888888999999999999999998865 4567888889999999999999999999988875 556788899999


Q ss_pred             HHHhCCCHHHHHHHHhhcCC--C-C----------hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHH
Q 037816          402 MYSKCGDLEDSIKVFSRMAP--R-N----------SVSWNSMIAAFARHGNGFKALELYEEMKLEGVE-PTDVTFLSLLH  467 (648)
Q Consensus       402 ~~~~~g~~~~A~~~~~~~~~--~-~----------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~-p~~~~~~~ll~  467 (648)
                      +|...|++++|...|+++.+  | +          ...+..+...+...|++++|...++++.+.... ++..++..+..
T Consensus       142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~  221 (365)
T 4eqf_A          142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV  221 (365)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred             HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence            99999999999999988753  1 1          223344578889999999999999999986521 15889999999


Q ss_pred             HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHH
Q 037816          468 ACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEM  545 (648)
Q Consensus       468 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~  545 (648)
                      .+...|++++|...++++.+.  .+.+..++..+..+|...|++++|.+.|+++ ...| +..++..+..+|...|++++
T Consensus       222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~  299 (365)
T 4eqf_A          222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE  299 (365)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence            999999999999999999884  3457889999999999999999999999988 4445 48889999999999999999


Q ss_pred             HHHHHHHHHhcCCC------------CCccHHHHHHHHHhcCChHHHHHHHHH
Q 037816          546 GKYAAEKLFLAQPD------------SPAPYILMANIYSCSGRWKERAKAIKR  586 (648)
Q Consensus       546 A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~  586 (648)
                      |+..++++++..|.            +..++..++.++...|+.+.+..+.++
T Consensus       300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            99999999988776            367899999999999999999887665

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.76  E-value=7.5e-15  Score=153.63  Aligned_cols=353  Identities=13%  Similarity=0.032  Sum_probs=294.9

Q ss_pred             CCcccHHHHHHHHHH----CCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhc----cCChHHHHHHHHHHHHhcCCCc
Q 037816          220 RNVITWTAVISGLVQ----NQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSG----LQALCEGRQIHGILWKLALQSD  291 (648)
Q Consensus       220 ~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~  291 (648)
                      .+...+..+...|..    .+++++|+..|++..+.|   +...+..+...+..    .++.++|.+.++...+.|   +
T Consensus        37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~  110 (490)
T 2xm6_A           37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L  110 (490)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred             CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence            466677778888888    899999999999998754   55667777777777    899999999999998876   5


Q ss_pred             hhHHHHHHHHHHh----cCCHHHHHHHHHhccCC-CcccHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcCHHHHH
Q 037816          292 LCIESALMDMYSK----CGSVEDAWQIFEFAEEL-DGVSMTVILVGFAQ----NGFEEEAMQLFVKMVKAGIEIDPNMVS  362 (648)
Q Consensus       292 ~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~  362 (648)
                      ...+..|...|..    .+++++|..+|+...+. ++..+..+...|..    .+++++|++.|++..+.|   +...+.
T Consensus       111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~  187 (490)
T 2xm6_A          111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN  187 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence            5667778888888    78999999999987664 56677778888887    789999999999999875   567777


Q ss_pred             HHHHHHhc----cCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----CCCHHHHHHHHhhcCC-CChhHHHHHHHH
Q 037816          363 AVLGVFGV----DTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSK----CGDLEDSIKVFSRMAP-RNSVSWNSMIAA  433 (648)
Q Consensus       363 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~  433 (648)
                      .+...+..    .++.++|..+++...+.|   ++..+..+...|..    .+++++|...|++..+ .+...+..+...
T Consensus       188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~  264 (490)
T 2xm6_A          188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI  264 (490)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            77777776    899999999999998875   45677778888886    8899999999998764 466777788888


Q ss_pred             HHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-----CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 037816          434 FAR----HGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHV-----GLVNKGMEFLKSMTEVHRISPRAEHYACVVDM  504 (648)
Q Consensus       434 ~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~  504 (648)
                      |..    .+++++|+..|++..+.|   +...+..+...+...     +++++|...+++..+. +   +...+..+...
T Consensus       265 y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~  337 (490)
T 2xm6_A          265 LEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAI  337 (490)
T ss_dssp             HHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHH
T ss_pred             HHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHH
Confidence            888    899999999999998765   556667777777776     8999999999999874 3   55677888888


Q ss_pred             hhhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHh----
Q 037816          505 VGRAG---LLIEARSFIERMPVKPDVLVWQALLGACSI----HGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSC----  573 (648)
Q Consensus       505 ~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----  573 (648)
                      |...|   ++++|.+.|++.-...++..+..|...|..    .+++++|+..++++.+.+  ++.++..++.+|..    
T Consensus       338 y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~  415 (490)
T 2xm6_A          338 YFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGV  415 (490)
T ss_dssp             HHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSS
T ss_pred             HHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCC
Confidence            88766   889999999988223578889999999998    899999999999998864  57799999999998    


Q ss_pred             cCChHHHHHHHHHHHhCCCC
Q 037816          574 SGRWKERAKAIKRMKEMGVD  593 (648)
Q Consensus       574 ~g~~~~A~~~~~~m~~~~~~  593 (648)
                      .+++++|..++++..+.+..
T Consensus       416 ~~d~~~A~~~~~~A~~~~~~  435 (490)
T 2xm6_A          416 ERDYVQAWAWFDTASTNDMN  435 (490)
T ss_dssp             CCCHHHHHHHHHHHHHHHCC
T ss_pred             CCCHHHHHHHHHHHHHCCCC
Confidence            89999999999999998743

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.75  E-value=5.9e-15  Score=156.11  Aligned_cols=407  Identities=9%  Similarity=0.063  Sum_probs=288.0

Q ss_pred             CcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 037816          119 DTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALI  198 (648)
Q Consensus       119 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li  198 (648)
                      |...|..++. +.+.|++++|..+|+++.+..  |+....|...+..+.+.|+.+.|..+++..++..  |+...|...+
T Consensus        12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~   86 (530)
T 2ooe_A           12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL   86 (530)
T ss_dssp             CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred             CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence            6778999998 578999999999999999864  8887789999999999999999999999998764  6777887777


Q ss_pred             HHh-HhcCChhHHHH----HhcccC-----C-CCcccHHHHHHHHHH---------CCCchHHHHHHHHHHhCCCCCCh-
Q 037816          199 TSY-FKCGSSSSGRK----VFGEMR-----V-RNVITWTAVISGLVQ---------NQLYEEGLKLFVKMHLGLINPNS-  257 (648)
Q Consensus       199 ~~~-~~~g~~~~A~~----~~~~~~-----~-~~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~~~~~p~~-  257 (648)
                      ... ...|+.+.|.+    +|+...     . ++...|...+.....         .|+++.|..+|++..+.   |+. 
T Consensus        87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~~  163 (530)
T 2ooe_A           87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMIN  163 (530)
T ss_dssp             HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCTT
T ss_pred             HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhhh
Confidence            543 34677777665    666542     1 245677777776655         68899999999999872   432 


Q ss_pred             --hhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHh-------ccC------CC
Q 037816          258 --LTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEF-------AEE------LD  322 (648)
Q Consensus       258 --~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-------~~~------~~  322 (648)
                        ..|..........+. ..+..                   ++.  .+.+++..|..++..       +..      |+
T Consensus       164 ~~~~~~~~~~~e~~~~~-~~~~~-------------------~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~  221 (530)
T 2ooe_A          164 IEQLWRDYNKYEEGINI-HLAKK-------------------MIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQ  221 (530)
T ss_dssp             HHHHHHHHHHHHHHHCH-HHHHH-------------------HHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC
T ss_pred             HHHHHHHHHHHHHhhch-hHHHH-------------------HHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCC
Confidence              222221111100010 00111                   110  012334444444432       111      11


Q ss_pred             --------cccHHHHHHHHHHc----CCH----HHHHHHHHHHHHcCCCcCHHHHHHHHHHHhc-------cCChh----
Q 037816          323 --------GVSMTVILVGFAQN----GFE----EEAMQLFVKMVKAGIEIDPNMVSAVLGVFGV-------DTSLG----  375 (648)
Q Consensus       323 --------~~~~~~li~~~~~~----~~~----~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-------~~~~~----  375 (648)
                              ...|...+......    ++.    +.+..+|++..... +.+...|......+.+       .|+++    
T Consensus       222 ~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~  300 (530)
T 2ooe_A          222 NTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKL  300 (530)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHH
T ss_pred             CChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhh
Confidence                    12333333222221    222    47778888888763 4567777777777664       68887    


Q ss_pred             ---HHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC--CC-Ch-hHHHHHHHHHHHcCChHHHHHHHH
Q 037816          376 ---LGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA--PR-NS-VSWNSMIAAFARHGNGFKALELYE  448 (648)
Q Consensus       376 ---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~-~~~~~l~~~~~~~~~~~~A~~~~~  448 (648)
                         .|..+++...+.-.+.+...+..++..+.+.|++++|..+|+++.  .| +. ..|..++..+.+.|++++|..+|+
T Consensus       301 ~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~  380 (530)
T 2ooe_A          301 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK  380 (530)
T ss_dssp             HHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHH
Confidence               889999998874346678899999999999999999999999875  33 33 478888888999999999999999


Q ss_pred             HHHHcCCCCCHHHHHHHHHH-HhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC----CC
Q 037816          449 EMKLEGVEPTDVTFLSLLHA-CSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM----PV  523 (648)
Q Consensus       449 ~m~~~~~~p~~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~  523 (648)
                      +..+.. +.+...|...... +...|++++|..+|+...+.  .+.+...|..+++.+.+.|+.++|..+|++.    +.
T Consensus       381 ~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~  457 (530)
T 2ooe_A          381 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL  457 (530)
T ss_dssp             HHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCS
T ss_pred             HHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCC
Confidence            998753 2233333332222 33589999999999999885  2347889999999999999999999999998    22


Q ss_pred             CCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 037816          524 KPD--VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD  559 (648)
Q Consensus       524 ~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  559 (648)
                      .|+  ...|...+......|+.+.+..+.+++.+..|.
T Consensus       458 ~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~  495 (530)
T 2ooe_A          458 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE  495 (530)
T ss_dssp             CGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence            332  457888888888999999999999999998884

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.75  E-value=1.5e-15  Score=146.57  Aligned_cols=270  Identities=6%  Similarity=-0.061  Sum_probs=218.2

Q ss_pred             HHHHhcCCHHHHHHHHHhccCCCcc----cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChh
Q 037816          300 DMYSKCGSVEDAWQIFEFAEELDGV----SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLG  375 (648)
Q Consensus       300 ~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~  375 (648)
                      +-....|++..|++.++.....++.    ....+..+|...|+++.|+..++.    .-+|+..++..+...+...++.+
T Consensus         7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~   82 (291)
T 3mkr_A            7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD   82 (291)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence            4456779999999999887664432    345577899999999999987755    24677788888999999999999


Q ss_pred             HHHHHHHHHHHhCC-CCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 037816          376 LGKQIHSLIIKSDF-TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEG  454 (648)
Q Consensus       376 ~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~  454 (648)
                      .|.+.++.+...+. |.++..+..+...+...|++++|++.+++  +.+...+..++..|.+.|++++|.+.++++.+..
T Consensus        83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~  160 (291)
T 3mkr_A           83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD  160 (291)
T ss_dssp             HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence            99999999988774 55667777888999999999999999998  5678899999999999999999999999999864


Q ss_pred             CCCCHHHH---HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHH
Q 037816          455 VEPTDVTF---LSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLV  529 (648)
Q Consensus       455 ~~p~~~~~---~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~  529 (648)
                        |+....   ..++..+...|++++|..+|+++.+.  .+.+...++.+..++.+.|++++|.+.++++ ...| ++.+
T Consensus       161 --p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~  236 (291)
T 3mkr_A          161 --EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET  236 (291)
T ss_dssp             --TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             --cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence              654321   22334455669999999999999984  5568899999999999999999999999997 4445 5788


Q ss_pred             HHHHHHHHHHcCChHH-HHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHH
Q 037816          530 WQALLGACSIHGDSEM-GKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKA  583 (648)
Q Consensus       530 ~~~l~~~~~~~g~~~~-A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  583 (648)
                      +..++..+...|+.++ +.++++++++.+|+++.+.    +...+.+.++++..-
T Consensus       237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~~  287 (291)
T 3mkr_A          237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVLQ  287 (291)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHHH
Confidence            9999999999999876 5789999999999997544    345555556655543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.75  E-value=1.2e-16  Score=157.71  Aligned_cols=258  Identities=10%  Similarity=-0.043  Sum_probs=192.5

Q ss_pred             cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 037816          325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYS  404 (648)
Q Consensus       325 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  404 (648)
                      .+..+...+...|++++|..+|+++.+.. +.+...+..+..++...|+++.|...++.+.+.. +.+..++..+...|.
T Consensus        23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~  100 (327)
T 3cv0_A           23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT  100 (327)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence            34455555666666666666666665543 3345555566666666666666666666666553 445556666666667


Q ss_pred             hCCCHHHHHHHHhhcCC---CChhHHHHH--------------HH-HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037816          405 KCGDLEDSIKVFSRMAP---RNSVSWNSM--------------IA-AFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL  466 (648)
Q Consensus       405 ~~g~~~~A~~~~~~~~~---~~~~~~~~l--------------~~-~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll  466 (648)
                      ..|++++|...++++..   .+...+..+              .. .+...|++++|...++++.+.. +.+...+..+.
T Consensus       101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la  179 (327)
T 3cv0_A          101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLG  179 (327)
T ss_dssp             HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence            77777777766665532   122222222              22 3667889999999999999865 34778899999


Q ss_pred             HHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChH
Q 037816          467 HACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSE  544 (648)
Q Consensus       467 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~  544 (648)
                      ..+...|++++|...++++.+.  .+.+...+..+...|...|++++|.+.++++ ...| +...+..+..++...|+++
T Consensus       180 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~  257 (327)
T 3cv0_A          180 VLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYD  257 (327)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHH
Confidence            9999999999999999999874  3446888999999999999999999999987 3334 5788999999999999999


Q ss_pred             HHHHHHHHHHhcCCC------------CCccHHHHHHHHHhcCChHHHHHHHHHH
Q 037816          545 MGKYAAEKLFLAQPD------------SPAPYILMANIYSCSGRWKERAKAIKRM  587 (648)
Q Consensus       545 ~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m  587 (648)
                      +|...++++++..|.            ++.++..++.++...|++++|..++++.
T Consensus       258 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  312 (327)
T 3cv0_A          258 LAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN  312 (327)
T ss_dssp             HHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            999999999999998            6889999999999999999999988754

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.74  E-value=7.8e-16  Score=160.57  Aligned_cols=281  Identities=9%  Similarity=0.012  Sum_probs=154.1

Q ss_pred             CHHHHHHHHHhccC--C-CcccHHHHHHH---HHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHh----ccCChhH
Q 037816          307 SVEDAWQIFEFAEE--L-DGVSMTVILVG---FAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFG----VDTSLGL  376 (648)
Q Consensus       307 ~~~~A~~~~~~~~~--~-~~~~~~~li~~---~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~----~~~~~~~  376 (648)
                      ++++|.+.|++..+  | ++..+..+..+   +...++.++|++.+++..+.. +.+...+..+...+.    ..++.+.
T Consensus       153 ~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~  231 (472)
T 4g1t_A          153 QNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGE  231 (472)
T ss_dssp             HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CH
T ss_pred             cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHH
Confidence            45555555555443  2 22222222222   234455566666666655543 223334433333332    2345566


Q ss_pred             HHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHH-----------------
Q 037816          377 GKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSMIAAFAR-----------------  436 (648)
Q Consensus       377 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~-----------------  436 (648)
                      |..+++...... +.+..++..+...|...|++++|...|.+..   +.+..++..+..+|..                 
T Consensus       232 a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~  310 (472)
T 4g1t_A          232 GEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKR  310 (472)
T ss_dssp             HHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHH
T ss_pred             HHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            666666665544 4455556666666666666666666666553   2234444444443321                 


Q ss_pred             --cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh--hHHHHHHH-HhhhcCCH
Q 037816          437 --HGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRA--EHYACVVD-MVGRAGLL  511 (648)
Q Consensus       437 --~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~l~~-~~~~~g~~  511 (648)
                        .+.++.|...+++..+.. +.+..++..+...+...|++++|...|+++.+. ...+..  ..+..+.. .+...|++
T Consensus       311 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~  388 (472)
T 4g1t_A          311 KLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCE  388 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCH
T ss_pred             HHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCH
Confidence              234567888888877754 334556777888899999999999999998763 322221  12333332 23467899


Q ss_pred             HHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816          512 IEARSFIERM-PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       512 ~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  590 (648)
                      ++|++.|++. .+.|+......         ....+..++++.++.+|.++.+|..++.+|...|++++|++.|++.++.
T Consensus       389 ~~Ai~~y~kal~i~~~~~~~~~---------~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~  459 (472)
T 4g1t_A          389 DKAIHHFIEGVKINQKSREKEK---------MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLES  459 (472)
T ss_dssp             HHHHHHHHHHHHSCCCCHHHHH---------HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------
T ss_pred             HHHHHHHHHHHhcCcccHHHHH---------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            9999999887 66676543322         2344566788888999999999999999999999999999999999987


Q ss_pred             CCCCCCceeE
Q 037816          591 GVDKETGISW  600 (648)
Q Consensus       591 ~~~~~~~~~~  600 (648)
                      |...+...+|
T Consensus       460 ~~~~p~a~~~  469 (472)
T 4g1t_A          460 GSLIPSASSW  469 (472)
T ss_dssp             ----------
T ss_pred             CCCCCcHhhc
Confidence            7655444444

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.73  E-value=3e-16  Score=157.79  Aligned_cols=146  Identities=12%  Similarity=-0.001  Sum_probs=74.8

Q ss_pred             hCCCHHHHHHHHhhcC--CC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHH
Q 037816          405 KCGDLEDSIKVFSRMA--PR---NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGM  479 (648)
Q Consensus       405 ~~g~~~~A~~~~~~~~--~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~  479 (648)
                      ..|++++|...|+++.  .|   +..++..+...|...|++++|...++++.+.. +.+..++..+...+...|++++|.
T Consensus       193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~  271 (368)
T 1fch_A          193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAV  271 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHH
Confidence            4444444444444432  11   23444555555555555555555555555432 223445555555555555555555


Q ss_pred             HHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC------------CHHHHHHHHHHHHHcCChHHH
Q 037816          480 EFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP------------DVLVWQALLGACSIHGDSEMG  546 (648)
Q Consensus       480 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p------------~~~~~~~l~~~~~~~g~~~~A  546 (648)
                      ..++++.+.  .+.+...+..+...|.+.|++++|.+.|+++ ...|            ...+|..+..++...|+.++|
T Consensus       272 ~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  349 (368)
T 1fch_A          272 AAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY  349 (368)
T ss_dssp             HHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred             HHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence            555555542  1224455555555555555555555555554 1111            145566666666666666666


Q ss_pred             HHHHHHH
Q 037816          547 KYAAEKL  553 (648)
Q Consensus       547 ~~~~~~~  553 (648)
                      ..++++.
T Consensus       350 ~~~~~~~  356 (368)
T 1fch_A          350 GAADARD  356 (368)
T ss_dssp             HHHHTTC
T ss_pred             HHhHHHH
Confidence            6655544

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.72  E-value=5.1e-16  Score=149.75  Aligned_cols=247  Identities=10%  Similarity=0.049  Sum_probs=204.2

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCcCH--HHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC
Q 037816          330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDP--NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCG  407 (648)
Q Consensus       330 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  407 (648)
                      ++.....|++..|+..+++....  .|+.  .....+..++...|+++.|...++.    .-+|+..++..+...+...+
T Consensus         6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~   79 (291)
T 3mkr_A            6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS   79 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred             HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence            45567889999999998876443  3443  3556678899999999999876644    24677888899999999999


Q ss_pred             CHHHHHHHHhhcC----CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 037816          408 DLEDSIKVFSRMA----PR-NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFL  482 (648)
Q Consensus       408 ~~~~A~~~~~~~~----~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~  482 (648)
                      +.++|.+.++++.    .| +...+..+...+...|++++|++.+++      +.+...+..+...+.+.|++++|...+
T Consensus        80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l  153 (291)
T 3mkr_A           80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL  153 (291)
T ss_dssp             THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            9999999999863    24 566777788999999999999999987      467888999999999999999999999


Q ss_pred             HHhHHhcCCCCChhH---HHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 037816          483 KSMTEVHRISPRAEH---YACVVDMVGRAGLLIEARSFIERM--PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQ  557 (648)
Q Consensus       483 ~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  557 (648)
                      +++.+.   .|+...   ...++..+...|++++|..+|+++  ..+.+...++.+..++.+.|++++|+..++++++.+
T Consensus       154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~  230 (291)
T 3mkr_A          154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD  230 (291)
T ss_dssp             HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            999885   354321   123445555669999999999998  334578889999999999999999999999999999


Q ss_pred             CCCCccHHHHHHHHHhcCChHH-HHHHHHHHHhCC
Q 037816          558 PDSPAPYILMANIYSCSGRWKE-RAKAIKRMKEMG  591 (648)
Q Consensus       558 p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~~  591 (648)
                      |+++.++..++.++...|+.++ +.++++++.+..
T Consensus       231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~  265 (291)
T 3mkr_A          231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH  265 (291)
T ss_dssp             TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence            9999999999999999999976 578999987743

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.70  E-value=6.8e-16  Score=155.09  Aligned_cols=232  Identities=12%  Similarity=0.009  Sum_probs=196.5

Q ss_pred             CHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHH
Q 037816          357 DPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSMIAA  433 (648)
Q Consensus       357 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~  433 (648)
                      +...+..+...+.+.|++++|..+++.+.+.. +.+..++..+...|...|++++|...|+++.   +.+..+|..+..+
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  142 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS  142 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            34557888889999999999999999999876 6678899999999999999999999999875   4468899999999


Q ss_pred             HHHcCChHHHHHHHHHHHHcCCCCCH-----------HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 037816          434 FARHGNGFKALELYEEMKLEGVEPTD-----------VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVV  502 (648)
Q Consensus       434 ~~~~~~~~~A~~~~~~m~~~~~~p~~-----------~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~  502 (648)
                      |...|++++|...++++.+..  |+.           ..+..+...+...|++++|...++++.+...-.++..++..+.
T Consensus       143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~  220 (365)
T 4eqf_A          143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG  220 (365)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred             HHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence            999999999999999998753  432           2233457788999999999999999998522222688999999


Q ss_pred             HHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHH
Q 037816          503 DMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKER  580 (648)
Q Consensus       503 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A  580 (648)
                      ..|...|++++|.+.++++ ...| +..+|..+..+|...|++++|+..++++++..|.++.++..++.+|...|++++|
T Consensus       221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A  300 (365)
T 4eqf_A          221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA  300 (365)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence            9999999999999999998 3344 5888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCC
Q 037816          581 AKAIKRMKEMG  591 (648)
Q Consensus       581 ~~~~~~m~~~~  591 (648)
                      .+.++++.+..
T Consensus       301 ~~~~~~al~~~  311 (365)
T 4eqf_A          301 VSNFLTALSLQ  311 (365)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhC
Confidence            99999998743

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.68  E-value=1.1e-15  Score=150.73  Aligned_cols=272  Identities=8%  Similarity=-0.053  Sum_probs=156.1

Q ss_pred             hHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHH
Q 037816          259 TYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE---LDGVSMTVILVGFAQ  335 (648)
Q Consensus       259 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~  335 (648)
                      .+......+...|++++|..+++.+.+.. +.+...+..+..++...|++++|...|+++.+   .+...+..+...+..
T Consensus        23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~  101 (327)
T 3cv0_A           23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN  101 (327)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence            34455555556666666666666665543 23444555555555555555555555555433   133344445555555


Q ss_pred             cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHH-HH-HHHhCCCHHHHH
Q 037816          336 NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGL-IN-MYSKCGDLEDSI  413 (648)
Q Consensus       336 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~-~~~~~g~~~~A~  413 (648)
                      .|++++|...++++..... .+...+..+...                      .|+......+ .. .+...|++++|.
T Consensus       102 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~A~  158 (327)
T 3cv0_A          102 EHNANAALASLRAWLLSQP-QYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYRECR  158 (327)
T ss_dssp             TTCHHHHHHHHHHHHHTST-TTTTC------------------------------------------CCTTSHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHHHH
Confidence            5555555555555554321 111111111000                      0000000011 11 255566667777


Q ss_pred             HHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 037816          414 KVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHR  490 (648)
Q Consensus       414 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~  490 (648)
                      ..++++.   +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.  
T Consensus       159 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--  235 (327)
T 3cv0_A          159 TLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI--  235 (327)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--
Confidence            7666654   2355667777777777777777777777777653 335667777777777777888888877777663  


Q ss_pred             CCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-------------HHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 037816          491 ISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPD-------------VLVWQALLGACSIHGDSEMGKYAAEKLFLA  556 (648)
Q Consensus       491 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  556 (648)
                      .+.+...+..+...|.+.|++++|.+.++++ ...|+             ...|..+..++...|++++|..+++++++.
T Consensus       236 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~  315 (327)
T 3cv0_A          236 NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEP  315 (327)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHH
T ss_pred             CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence            2335667777777777888888888777766 22232             566777777888888888888877766544


Q ss_pred             C
Q 037816          557 Q  557 (648)
Q Consensus       557 ~  557 (648)
                      .
T Consensus       316 ~  316 (327)
T 3cv0_A          316 F  316 (327)
T ss_dssp             H
T ss_pred             c
Confidence            3

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.67  E-value=1.6e-14  Score=150.62  Aligned_cols=379  Identities=8%  Similarity=-0.043  Sum_probs=188.7

Q ss_pred             HHHHHHHHhhccCChHHHHHHHHHHHHh-----C---CCCChhHHHHHHHHhHhcCChhHHHHHhcccCC-------C--
Q 037816          158 SFTIILSACDRSELSLVSKMIHCLVYLC-----G---YEEEVTVGNALITSYFKCGSSSSGRKVFGEMRV-------R--  220 (648)
Q Consensus       158 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~--  220 (648)
                      .|+.|...+...|+.++|...++..++.     +   -+....+|+.+..+|...|++++|...+++...       +  
T Consensus        53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~  132 (472)
T 4g1t_A           53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR  132 (472)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccc
Confidence            5666666777777777777776665442     0   122234566677777777777777666655421       1  


Q ss_pred             --CcccHHHHHHHHHH--CCCchHHHHHHHHHHhCCCCCChh-hHHHHHHH---hhccCChHHHHHHHHHHHHhcCCCch
Q 037816          221 --NVITWTAVISGLVQ--NQLYEEGLKLFVKMHLGLINPNSL-TYLSSVMA---CSGLQALCEGRQIHGILWKLALQSDL  292 (648)
Q Consensus       221 --~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~~~~p~~~-t~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~  292 (648)
                        ...++..+..++..  .+++++|++.|++..+.  .|+.. .+..+..+   +...++.++|.+.++...+.. +.+.
T Consensus       133 ~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~  209 (472)
T 4g1t_A          133 IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQ  209 (472)
T ss_dssp             CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCH
T ss_pred             hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccch
Confidence              12234444334433  34566777777766542  34432 22222222   233455556666666655543 2233


Q ss_pred             hHHHHHHHHHHh----cCCHHHHHHHHHhccC---CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 037816          293 CIESALMDMYSK----CGSVEDAWQIFEFAEE---LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVL  365 (648)
Q Consensus       293 ~~~~~l~~~~~~----~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll  365 (648)
                      .++..+...+..    .++.++|.+++++...   .+...+..+...|...|++++|+..+++..+.. +-+..++..+.
T Consensus       210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg  288 (472)
T 4g1t_A          210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIG  288 (472)
T ss_dssp             HHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHH
Confidence            334333333332    2345555555554432   233445555556666666666666666655542 22333333333


Q ss_pred             HHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHH
Q 037816          366 GVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFK  442 (648)
Q Consensus       366 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~  442 (648)
                      .++...+..         .....       ...........+.++.|...|+...   +.+..++..+...|...|++++
T Consensus       289 ~~y~~~~~~---------~~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~  352 (472)
T 4g1t_A          289 CCYRAKVFQ---------VMNLR-------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEE  352 (472)
T ss_dssp             HHHHHHHHH---------HHHC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHH---------hhhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHH
Confidence            322110000         00000       0000000111223566777776653   4466788889999999999999


Q ss_pred             HHHHHHHHHHcCCCCCHH--HHHHHHH-HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHH
Q 037816          443 ALELYEEMKLEGVEPTDV--TFLSLLH-ACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIE  519 (648)
Q Consensus       443 A~~~~~~m~~~~~~p~~~--~~~~ll~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  519 (648)
                      |+..|++..+....|...  .+..+.. .....|++++|+..|++..+   +.|+.......         ...+.++++
T Consensus       353 A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~---------~~~l~~~~~  420 (472)
T 4g1t_A          353 AEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKM---------KDKLQKIAK  420 (472)
T ss_dssp             HHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHH---------HHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHH---------HHHHHHHHH
Confidence            999999999865333221  2222222 23578999999999999876   35544332222         223334444


Q ss_pred             hC-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHH
Q 037816          520 RM-PV-KPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA  568 (648)
Q Consensus       520 ~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~  568 (648)
                      +. .. +.+..+|..+..+|...|++++|++.|+++++..|.+|.+..-++
T Consensus       421 ~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G  471 (472)
T 4g1t_A          421 MRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG  471 (472)
T ss_dssp             HHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence            43 22 345778999999999999999999999999999998887766554

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.65  E-value=8.3e-15  Score=134.89  Aligned_cols=196  Identities=14%  Similarity=0.054  Sum_probs=158.5

Q ss_pred             CCchhHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037816          390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL  466 (648)
Q Consensus       390 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll  466 (648)
                      |++...+..+...+.+.|++++|...|++..   +.+...+..+...+.+.|++++|+..+++..+.. +.+...+..+.
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg   80 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS   80 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence            5677788888889999999999999998765   3467788889999999999999999999999864 33677888888


Q ss_pred             HHHhcc-----------CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 037816          467 HACSHV-----------GLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPDVLVWQALL  534 (648)
Q Consensus       467 ~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~  534 (648)
                      .++...           |++++|...+++..+.  -+-+...+..+..+|...|++++|++.|++. ....++..+..+.
T Consensus        81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la  158 (217)
T 2pl2_A           81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA  158 (217)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence            899999           9999999999999874  2336788999999999999999999999988 2227888999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHH
Q 037816          535 GACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMK  588 (648)
Q Consensus       535 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  588 (648)
                      .++...|++++|+..++++++..|+++.++..++.++...|++++|++.+++..
T Consensus       159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999988753

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.64  E-value=2.5e-14  Score=135.59  Aligned_cols=217  Identities=13%  Similarity=0.024  Sum_probs=161.3

Q ss_pred             HHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC--C----C----hhHHHHH
Q 037816          361 VSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP--R----N----SVSWNSM  430 (648)
Q Consensus       361 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~----~----~~~~~~l  430 (648)
                      +..+...+...|++++|..+++.+.+..  .+...+..+..+|...|++++|...+.+..+  |    +    ..+|..+
T Consensus         8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l   85 (258)
T 3uq3_A            8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI   85 (258)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence            3344444445555555555555554444  4445555555566666666666666555432  1    1    4667778


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCC
Q 037816          431 IAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL  510 (648)
Q Consensus       431 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  510 (648)
                      ...+...|++++|...+++..+..  |+.       ..+...|++++|...++++..  ..+.+...+..+...+...|+
T Consensus        86 ~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  154 (258)
T 3uq3_A           86 GNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSD  154 (258)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcC
Confidence            888888888888888888888743  553       345666888999999998876  233367788889999999999


Q ss_pred             HHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHH
Q 037816          511 LIEARSFIERM-PVK-PDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMK  588 (648)
Q Consensus       511 ~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  588 (648)
                      +++|.+.++++ ... .+...+..+..++...|++++|+..++++++..|.++.++..++.++...|++++|.+.+++..
T Consensus       155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  234 (258)
T 3uq3_A          155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR  234 (258)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            99999999887 333 3578888999999999999999999999999999999999999999999999999999999987


Q ss_pred             hC
Q 037816          589 EM  590 (648)
Q Consensus       589 ~~  590 (648)
                      +.
T Consensus       235 ~~  236 (258)
T 3uq3_A          235 TK  236 (258)
T ss_dssp             HH
T ss_pred             Hh
Confidence            64

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.61  E-value=7.5e-16  Score=163.45  Aligned_cols=149  Identities=13%  Similarity=0.116  Sum_probs=119.2

Q ss_pred             CchhHHHHHHHHHHhcCCHHHHHHHHHhcc-------CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHH
Q 037816          290 SDLCIESALMDMYSKCGSVEDAWQIFEFAE-------ELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVS  362 (648)
Q Consensus       290 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~  362 (648)
                      .-..+|++||++||+.|++++|.++|++|.       .||+++||+||.+|++.|++++|.++|++|.+.|+.||..||+
T Consensus       125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn  204 (1134)
T 3spa_A          125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA  204 (1134)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence            345578888888888888888888886653       4788999999999999999999999999999999999999999


Q ss_pred             HHHHHHhccCCh-hHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCC-----ChhHHHHHHHHHHH
Q 037816          363 AVLGVFGVDTSL-GLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR-----NSVSWNSMIAAFAR  436 (648)
Q Consensus       363 ~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~  436 (648)
                      ++|.++|+.|+. +.|.+++++|.+.|+.||..+|++++....+.+-++.+.++...+..+     .+.+...|...|.+
T Consensus       205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~  284 (1134)
T 3spa_A          205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAK  284 (1134)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCC
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHcc
Confidence            999999999985 789999999999999999999999998877765555555554444321     13344445555554


Q ss_pred             cC
Q 037816          437 HG  438 (648)
Q Consensus       437 ~~  438 (648)
                      .+
T Consensus       285 d~  286 (1134)
T 3spa_A          285 DG  286 (1134)
T ss_dssp             CS
T ss_pred             CC
Confidence            44

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.60  E-value=2.7e-14  Score=135.45  Aligned_cols=233  Identities=11%  Similarity=-0.018  Sum_probs=176.1

Q ss_pred             cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCC--CCc----hhHHHH
Q 037816          325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDF--TSN----PFVNNG  398 (648)
Q Consensus       325 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~  398 (648)
                      .+..+...+...|++++|+..|++..+..  .+...+..+..++...|++++|...+..+.+...  .++    ..++..
T Consensus         7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~   84 (258)
T 3uq3_A            7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR   84 (258)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence            34555666667777777777777776665  5666677777777777777777777776665321  111    467777


Q ss_pred             HHHHHHhCCCHHHHHHHHhhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHH
Q 037816          399 LINMYSKCGDLEDSIKVFSRMAP--RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVN  476 (648)
Q Consensus       399 li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~  476 (648)
                      +...|...|++++|...|++..+  ++       ...+...|++++|...++++.... +.+...+..+...+...|+++
T Consensus        85 l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  156 (258)
T 3uq3_A           85 IGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWP  156 (258)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHH
Confidence            88888888888888888877653  33       234666788899999999988853 224567788888899999999


Q ss_pred             HHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 037816          477 KGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLF  554 (648)
Q Consensus       477 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  554 (648)
                      +|...++++.+.  .+.+..++..+...|...|++++|.+.+++. ...| +...|..+..++...|++++|...+++++
T Consensus       157 ~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  234 (258)
T 3uq3_A          157 NAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR  234 (258)
T ss_dssp             HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            999999999874  3447888999999999999999999999988 3344 47888899999999999999999999999


Q ss_pred             hcC------CCCCccHHHHHH
Q 037816          555 LAQ------PDSPAPYILMAN  569 (648)
Q Consensus       555 ~~~------p~~~~~~~~l~~  569 (648)
                      +..      |.+..++..+..
T Consensus       235 ~~~~~~~~~p~~~~~~~~l~~  255 (258)
T 3uq3_A          235 TKDAEVNNGSSAREIDQLYYK  255 (258)
T ss_dssp             HHHHHHHTTTTHHHHHHHHHH
T ss_pred             HhChhhcCCCchHHHHHHHHH
Confidence            888      777666665554

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.60  E-value=6.2e-14  Score=134.40  Aligned_cols=241  Identities=10%  Similarity=-0.050  Sum_probs=186.8

Q ss_pred             HcCCHHHHHHHHHHHHHcCC---CcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHH
Q 037816          335 QNGFEEEAMQLFVKMVKAGI---EIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLED  411 (648)
Q Consensus       335 ~~~~~~~a~~~~~~m~~~~~---~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  411 (648)
                      ..|++++|+..|+++.+...   +.+..++..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++
T Consensus        17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~   95 (275)
T 1xnf_A           17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA   95 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred             ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence            34677788888888776532   1235667777777888888888888888887765 4567788888888999999999


Q ss_pred             HHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 037816          412 SIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEV  488 (648)
Q Consensus       412 A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~  488 (648)
                      |...|+++.   +.+...+..+...|...|++++|...++++.+..  |+.......+..+...|++++|...+++....
T Consensus        96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  173 (275)
T 1xnf_A           96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK  173 (275)
T ss_dssp             HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            999988775   3467888999999999999999999999999854  65555555556667789999999999888874


Q ss_pred             cCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc
Q 037816          489 HRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPD-----VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPA  562 (648)
Q Consensus       489 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~  562 (648)
                        .+++...+ .++..+...++.++|.+.+++. ...|+     ...+..+..+|...|++++|...++++++.+|.+..
T Consensus       174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  250 (275)
T 1xnf_A          174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV  250 (275)
T ss_dssp             --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred             --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence              34454444 4777888888999999999887 33332     577888999999999999999999999999998754


Q ss_pred             cHHHHHHHHHhcCChHHHHHHH
Q 037816          563 PYILMANIYSCSGRWKERAKAI  584 (648)
Q Consensus       563 ~~~~l~~~~~~~g~~~~A~~~~  584 (648)
                      .+   +.++...|++++|++.+
T Consensus       251 ~~---~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          251 EH---RYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HH---HHHHHHHHHHHHC----
T ss_pred             HH---HHHHHHHHHHHhhHHHH
Confidence            44   56788889999998876

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.60  E-value=1e-15  Score=162.50  Aligned_cols=116  Identities=13%  Similarity=0.086  Sum_probs=79.9

Q ss_pred             chhHHHHHHHHHHhCCCHHHHHHHHhhcC-------CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 037816          392 NPFVNNGLINMYSKCGDLEDSIKVFSRMA-------PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLS  464 (648)
Q Consensus       392 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~  464 (648)
                      -..+|++||++||+.|++++|.++|.+|.       .||+++||+||.+||+.|++++|.++|++|.+.|+.||..||++
T Consensus       126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt  205 (1134)
T 3spa_A          126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA  205 (1134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence            34566666666666666666666665542       46777777777777777777777777777777777777777777


Q ss_pred             HHHHHhccCc-HHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhc
Q 037816          465 LLHACSHVGL-VNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA  508 (648)
Q Consensus       465 ll~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  508 (648)
                      +|.++++.|+ .+.|.++|++|.+. |+.||..+|++++....+.
T Consensus       206 LI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~  249 (1134)
T 3spa_A          206 ALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRA  249 (1134)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHH
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHH
Confidence            7777777766 45677777777775 7777777777766555544

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.58  E-value=9e-14  Score=133.07  Aligned_cols=246  Identities=11%  Similarity=-0.026  Sum_probs=127.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhccC---CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcC--HHHHHHHHHHHh
Q 037816          295 ESALMDMYSKCGSVEDAWQIFEFAEE---LDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEID--PNMVSAVLGVFG  369 (648)
Q Consensus       295 ~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~  369 (648)
                      +......+...|++++|...|+...+   .+...+..+..++...|++++|+..+++..+.+..|+  ...|..+...+.
T Consensus         6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~   85 (272)
T 3u4t_A            6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM   85 (272)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence            34455556666666666666665543   2333555566666666666666666666655221111  122444444555


Q ss_pred             ccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 037816          370 VDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE  449 (648)
Q Consensus       370 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  449 (648)
                      ..|++++|...++...+.. +.+..++..+...|..                               .|++++|+..+++
T Consensus        86 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~-------------------------------~~~~~~A~~~~~~  133 (272)
T 3u4t_A           86 KKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYN-------------------------------KGNFPLAIQYMEK  133 (272)
T ss_dssp             HTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHH-------------------------------TTCHHHHHHHHGG
T ss_pred             HcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHH-------------------------------ccCHHHHHHHHHH
Confidence            5555555555555554433 2233444444444444                               4444444444444


Q ss_pred             HHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCC---HHHHHHHHHhC----C
Q 037816          450 MKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL---LIEARSFIERM----P  522 (648)
Q Consensus       450 m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~----~  522 (648)
                      ..+.. +.+...+..+...+...+++++|...++++.+.  .+.+...+..+...+...|+   +++|...+++.    .
T Consensus       134 al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~  210 (272)
T 3u4t_A          134 QIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCA  210 (272)
T ss_dssp             GCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHG
T ss_pred             HhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHh
Confidence            44321 113333333331222233555555555555442  12234444445555554454   44444444443    1


Q ss_pred             CCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcC
Q 037816          523 VKPD------VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSG  575 (648)
Q Consensus       523 ~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  575 (648)
                      ..|+      ...|..+...|...|++++|+..++++++.+|+++.+...+.......+
T Consensus       211 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~  269 (272)
T 3u4t_A          211 PGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH  269 (272)
T ss_dssp             GGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred             cccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence            1122      2467778888889999999999999999999999888877766655443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.56  E-value=5.6e-13  Score=137.20  Aligned_cols=374  Identities=10%  Similarity=0.006  Sum_probs=195.9

Q ss_pred             hccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCh---hHHHHHhcccCCCCcccHHHHHHHHHHCC-----Cc
Q 037816          167 DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS---SSGRKVFGEMRVRNVITWTAVISGLVQNQ-----LY  238 (648)
Q Consensus       167 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g-----~~  238 (648)
                      .+.|++++|..+++...+.|   +...+..|...|...|+.   ++|...|+...+.+...+..|...+...+     ++
T Consensus        14 ~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~   90 (452)
T 3e4b_A           14 LKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEH   90 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHHH
T ss_pred             HhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCH
Confidence            33444444444444444443   122223344444555666   77777777776556666666666555554     66


Q ss_pred             hHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHH---HHHHHHHHHHhcCCCchhHHHHHHHHHHhcC----CHHHH
Q 037816          239 EEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCE---GRQIHGILWKLALQSDLCIESALMDMYSKCG----SVEDA  311 (648)
Q Consensus       239 ~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A  311 (648)
                      ++|+..|++..+.|...   .+..+...+...+..+.   +.+.+......|   +......|...|...+    +.+.+
T Consensus        91 ~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a  164 (452)
T 3e4b_A           91 HEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDV  164 (452)
T ss_dssp             HHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHH
T ss_pred             HHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHH
Confidence            78888888877754322   44445555544433222   333333333333   2344455666666665    34445


Q ss_pred             HHHHHhccCCCcccHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhC
Q 037816          312 WQIFEFAEELDGVSMTVILVGFAQNG---FEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD  388 (648)
Q Consensus       312 ~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  388 (648)
                      ..+++.....++..+..+...|...|   +.++|+..|++..+.| .++...+..+...|...                 
T Consensus       165 ~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g-----------------  226 (452)
T 3e4b_A          165 ERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDA-----------------  226 (452)
T ss_dssp             HHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCG-----------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCC-----------------
Confidence            55555555555556666666666666   6667777776666665 33333323333333222                 


Q ss_pred             CCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHH-H--HHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 037816          389 FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAA-F--ARHGNGFKALELYEEMKLEGVEPTDVTFLSL  465 (648)
Q Consensus       389 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l  465 (648)
                                    ....+++++|...|+...+.+...+..|... +  ...+++++|+..|++..+.|   +...+..+
T Consensus       227 --------------~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~L  289 (452)
T 3e4b_A          227 --------------TLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLL  289 (452)
T ss_dssp             --------------GGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             --------------CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence                          0001455555555555442244455555544 2  34677888888888877765   55566666


Q ss_pred             HHHHhccC-----cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 037816          466 LHACSHVG-----LVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR----AGLLIEARSFIERMPVKPDVLVWQALLGA  536 (648)
Q Consensus       466 l~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~  536 (648)
                      ...|. .|     ++++|..+|++..     +-++..+..|...|..    ..++++|...|++.-..-+......|...
T Consensus       290 g~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~  363 (452)
T 3e4b_A          290 GKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQL  363 (452)
T ss_dssp             HHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred             HHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHH
Confidence            66665 44     8888888888774     3466677777777765    34888888888877222234445556666


Q ss_pred             HHH----cCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816          537 CSI----HGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       537 ~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  590 (648)
                      |..    ..+.++|...++++.+.++++.......+......++.++|..+.++..+.
T Consensus       364 y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~  421 (452)
T 3e4b_A          364 FSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELAA  421 (452)
T ss_dssp             HHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence            653    358888999999888876654332222222223345677777777776553

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.53  E-value=1.1e-12  Score=121.30  Aligned_cols=197  Identities=11%  Similarity=0.041  Sum_probs=148.0

Q ss_pred             chhHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037816          392 NPFVNNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHA  468 (648)
Q Consensus       392 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~  468 (648)
                      ++..+..+...+...|++++|...|+++.   +.+...+..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~   85 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF   85 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence            34556666677777777777777776654   3356677777777888888888888888877754 3356677777888


Q ss_pred             Hhcc-CcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChH
Q 037816          469 CSHV-GLVNKGMEFLKSMTEVHRISP-RAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSE  544 (648)
Q Consensus       469 ~~~~-g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~  544 (648)
                      +... |++++|...++++.+. +..| +...+..+...+...|++++|.+.++++ ...| +...+..+..++...|+++
T Consensus        86 ~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  164 (225)
T 2vq2_A           86 LCGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG  164 (225)
T ss_dssp             HHTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence            8888 8888888888888762 3333 4667777888888888888888888877 3333 4677788888888888888


Q ss_pred             HHHHHHHHHHhcCC-CCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816          545 MGKYAAEKLFLAQP-DSPAPYILMANIYSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       545 ~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  590 (648)
                      +|...++++++..| .++..+..++..+...|+.++|..+++.+.+.
T Consensus       165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  211 (225)
T 2vq2_A          165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN  211 (225)
T ss_dssp             HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence            88888888888888 77788888888888888888888888887653

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.53  E-value=9.1e-13  Score=124.43  Aligned_cols=195  Identities=9%  Similarity=0.004  Sum_probs=136.4

Q ss_pred             hHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 037816          394 FVNNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACS  470 (648)
Q Consensus       394 ~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~  470 (648)
                      ..+..+...+...|++++|...|+++.   +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+.
T Consensus        38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~  116 (252)
T 2ho1_A           38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLY  116 (252)
T ss_dssp             HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHH
Confidence            445555666666666666666666553   2345566667777777777777777777777653 235666777777777


Q ss_pred             ccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHH
Q 037816          471 HVGLVNKGMEFLKSMTEVHRISP-RAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGK  547 (648)
Q Consensus       471 ~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~  547 (648)
                      ..|++++|..+++++.+ .+..| +...+..+...|...|++++|.+.++++ ...| +...+..+...+...|++++|.
T Consensus       117 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  195 (252)
T 2ho1_A          117 EQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR  195 (252)
T ss_dssp             HTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence            77777777777777765 12334 5566777777777777777777777776 2233 4666777777778888888888


Q ss_pred             HHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816          548 YAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       548 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  590 (648)
                      ..++++++..|.+...+..++.++...|++++|.++++++.+.
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~  238 (252)
T 2ho1_A          196 QYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL  238 (252)
T ss_dssp             HHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            8888888777777777777888888888888888888877664

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.52  E-value=2.4e-13  Score=127.57  Aligned_cols=162  Identities=6%  Similarity=0.053  Sum_probs=73.0

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 037816          425 VSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDM  504 (648)
Q Consensus       425 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~  504 (648)
                      ..+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++++.+.  .+.+...+..+...
T Consensus        58 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~  134 (243)
T 2q7f_A           58 IPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTV  134 (243)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence            334444444444444444444444444332 123334444444444444444444444444432  12233444444444


Q ss_pred             hhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHH
Q 037816          505 VGRAGLLIEARSFIERM-PVK-PDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAK  582 (648)
Q Consensus       505 ~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~  582 (648)
                      +.+.|++++|.+.++++ ... .+...+..+...+...|++++|+..++++++..|.++.++..++.+|...|++++|.+
T Consensus       135 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  214 (243)
T 2q7f_A          135 LVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALE  214 (243)
T ss_dssp             HHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHH
Confidence            44444444444444443 111 2344444444444555555555555555555555444445555555555555555555


Q ss_pred             HHHHHHh
Q 037816          583 AIKRMKE  589 (648)
Q Consensus       583 ~~~~m~~  589 (648)
                      .++++.+
T Consensus       215 ~~~~~~~  221 (243)
T 2q7f_A          215 MLDKAID  221 (243)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHc
Confidence            5554444

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.52  E-value=2.7e-13  Score=127.23  Aligned_cols=216  Identities=11%  Similarity=0.059  Sum_probs=166.8

Q ss_pred             CcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHH
Q 037816          355 EIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSMI  431 (648)
Q Consensus       355 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~  431 (648)
                      ......+..+...+...|+++.|..+++.+.+.. +.+...+..+...+...|++++|...|+++.   +.+...+..+.
T Consensus        20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la   98 (243)
T 2q7f_A           20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAG   98 (243)
T ss_dssp             ----------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence            3455677778888899999999999999998854 5578888999999999999999999999875   44678899999


Q ss_pred             HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCH
Q 037816          432 AAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLL  511 (648)
Q Consensus       432 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  511 (648)
                      ..+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.  .+.+...+..+...|.+.|++
T Consensus        99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~  175 (243)
T 2q7f_A           99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGML  175 (243)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCH
Confidence            99999999999999999999865 447788888999999999999999999999874  345788899999999999999


Q ss_pred             HHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhc
Q 037816          512 IEARSFIERM-PVK-PDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCS  574 (648)
Q Consensus       512 ~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  574 (648)
                      ++|.+.++++ ... .+..++..+..++...|++++|...++++++..|+++.++..+..+....
T Consensus       176 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~  240 (243)
T 2q7f_A          176 DEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHH  240 (243)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-----
T ss_pred             HHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhc
Confidence            9999999988 333 45788999999999999999999999999999999988887776554433

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.52  E-value=5.5e-12  Score=120.67  Aligned_cols=188  Identities=11%  Similarity=-0.001  Sum_probs=122.6

Q ss_pred             HHHHHHHHHHh----CCCHHHHHHHHhhcCC-CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 037816          395 VNNGLINMYSK----CGDLEDSIKVFSRMAP-RNSVSWNSMIAAFAR----HGNGFKALELYEEMKLEGVEPTDVTFLSL  465 (648)
Q Consensus       395 ~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~l  465 (648)
                      .+..+...|..    .+++++|...|++..+ .+...+..+...|..    .+++++|+..|++..+.+   +...+..+
T Consensus        40 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l  116 (273)
T 1ouv_A           40 GCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASL  116 (273)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             HHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHH
Confidence            33444444444    5555555555544432 244455555566666    667777777777666654   55666666


Q ss_pred             HHHHhc----cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 037816          466 LHACSH----VGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR----AGLLIEARSFIERMPVKPDVLVWQALLGAC  537 (648)
Q Consensus       466 l~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~  537 (648)
                      ...|..    .+++++|...+++..+. +   +...+..+...|..    .+++++|.+.|++.-...+...+..+...|
T Consensus       117 g~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~  192 (273)
T 1ouv_A          117 GGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMY  192 (273)
T ss_dssp             HHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            666666    77777777777777663 2   45556666666666    777777777777661113456667777777


Q ss_pred             HH----cCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHh----cCChHHHHHHHHHHHhCC
Q 037816          538 SI----HGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSC----SGRWKERAKAIKRMKEMG  591 (648)
Q Consensus       538 ~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~  591 (648)
                      ..    .+++++|+..++++.+.+|  +.++..++.+|..    .|++++|.+++++..+.|
T Consensus       193 ~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          193 HHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             HHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             HcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence            77    7888888888888877765  5677777888877    788888888888877755

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.52  E-value=1.3e-12  Score=134.42  Aligned_cols=344  Identities=11%  Similarity=0.013  Sum_probs=230.6

Q ss_pred             HHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCCh---HHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 037816          227 AVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQAL---CEGRQIHGILWKLALQSDLCIESALMDMYS  303 (648)
Q Consensus       227 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  303 (648)
                      .+...+.+.|++++|+++|++..+.|   +...+..+...+...|+.   ++|...|+...+.    +...+..|...+.
T Consensus         8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~   80 (452)
T 3e4b_A            8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA   80 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence            35677788999999999999997765   333444455555667777   8999999888755    4445566666455


Q ss_pred             hcC-----CHHHHHHHHHhccCC-CcccHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCCh
Q 037816          304 KCG-----SVEDAWQIFEFAEEL-DGVSMTVILVGFAQNGFEE---EAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSL  374 (648)
Q Consensus       304 ~~~-----~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~~~~---~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~  374 (648)
                      ..+     ++++|..+|++..++ ++..+..|...|...+...   ++.+.+.+....|.   ......+...+...+.+
T Consensus        81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~  157 (452)
T 3e4b_A           81 AKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTY  157 (452)
T ss_dssp             TC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCG
T ss_pred             hCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCc
Confidence            554     788999999887764 5667888888888776544   45555555555553   33445555666666655


Q ss_pred             hHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC---CHHHHHHHHhhcCC---CChhHHHHHHHHHHHc----CChHHHH
Q 037816          375 GLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCG---DLEDSIKVFSRMAP---RNSVSWNSMIAAFARH----GNGFKAL  444 (648)
Q Consensus       375 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~----~~~~~A~  444 (648)
                      +.+......+.+.-...++..+..|...|...|   +.++|...|++..+   ++...+..|...|...    +++++|.
T Consensus       158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~  237 (452)
T 3e4b_A          158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQ  237 (452)
T ss_dssp             GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred             ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence            554444333333323344458888888999999   89999999987753   2334446677777554    7899999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHH-H--hccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcC-----CHHHHHH
Q 037816          445 ELYEEMKLEGVEPTDVTFLSLLHA-C--SHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG-----LLIEARS  516 (648)
Q Consensus       445 ~~~~~m~~~~~~p~~~~~~~ll~~-~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~  516 (648)
                      ..|++.. .|   +...+..+... +  ...+++++|..+|++..+. |   +...+..|...|. .|     ++++|.+
T Consensus       238 ~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~  308 (452)
T 3e4b_A          238 ALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEA  308 (452)
T ss_dssp             HHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred             HHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence            9999987 43   44555555555 3  5689999999999999874 4   6777778888887 55     9999999


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHh----cCChHHHHHHHHHHH
Q 037816          517 FIERMPVKPDVLVWQALLGACSI----HGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSC----SGRWKERAKAIKRMK  588 (648)
Q Consensus       517 ~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~  588 (648)
                      .|++.- .-++..+..|...|..    ..++++|...++++.+.  .++.+...++.+|..    ..+.++|..++++..
T Consensus       309 ~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~  385 (452)
T 3e4b_A          309 HFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAK  385 (452)
T ss_dssp             HHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHH
T ss_pred             HHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence            999997 6678888888877766    34999999999998774  456788999998885    458999999999999


Q ss_pred             hCCC
Q 037816          589 EMGV  592 (648)
Q Consensus       589 ~~~~  592 (648)
                      +.|.
T Consensus       386 ~~g~  389 (452)
T 3e4b_A          386 AQDT  389 (452)
T ss_dssp             TTCC
T ss_pred             HCCC
Confidence            9885

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.51  E-value=2.9e-12  Score=120.97  Aligned_cols=197  Identities=10%  Similarity=0.013  Sum_probs=134.0

Q ss_pred             HHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHH
Q 037816          366 GVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFK  442 (648)
Q Consensus       366 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~  442 (648)
                      ..+...|++++|...++.+.+.. +.+...+..+...|...|++++|.+.|+++.   +.+...+..+...|...|++++
T Consensus        45 ~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~  123 (252)
T 2ho1_A           45 LGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEE  123 (252)
T ss_dssp             HHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHH
Confidence            33333444444444444433332 2334445555555556666666666655543   2345566667777777788888


Q ss_pred             HHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC
Q 037816          443 ALELYEEMKLEGVEP-TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM  521 (648)
Q Consensus       443 A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  521 (648)
                      |...++++.+.+..| +...+..+...+...|++++|...++++.+.  .+.+...+..+...|...|++++|...++++
T Consensus       124 A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  201 (252)
T 2ho1_A          124 AYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLF  201 (252)
T ss_dssp             HHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            888887777633345 4456777777888888888888888888774  2346777888888888899999999888887


Q ss_pred             -CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHH
Q 037816          522 -PVK-PDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYI  565 (648)
Q Consensus       522 -~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~  565 (648)
                       ... .+...+..+...+...|+.++|...++++.+..|+++....
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~  247 (252)
T 2ho1_A          202 AQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE  247 (252)
T ss_dssp             HTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred             HHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence             333 35667788888888999999999999999999998765443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.50  E-value=1.5e-12  Score=129.72  Aligned_cols=244  Identities=8%  Similarity=0.019  Sum_probs=188.8

Q ss_pred             cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCC-hhHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 037816          325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTS-LGLGKQIHSLIIKSDFTSNPFVNNGLINMY  403 (648)
Q Consensus       325 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~  403 (648)
                      .|..+...+...|++++|+..+++.+... +-+...|..+..++...|+ +++|...++.+.... +.+...|..+..++
T Consensus        99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~  176 (382)
T 2h6f_A           99 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV  176 (382)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence            45566667777788888888888877754 3456667777777777775 888888888877765 55677888888888


Q ss_pred             HhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-cCcHHHH-
Q 037816          404 SKCGDLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSH-VGLVNKG-  478 (648)
Q Consensus       404 ~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~g~~~~A-  478 (648)
                      ...|++++|+..|+++.   +.+...|..+..++...|++++|+..++++++.. +-+...|+.+..++.. .|..++| 
T Consensus       177 ~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~  255 (382)
T 2h6f_A          177 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAV  255 (382)
T ss_dssp             HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred             HHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHH
Confidence            88888888888888775   4577888888889999999999999999999865 3367788888888887 5554666 


Q ss_pred             ----HHHHHHhHHhcCCCCChhHHHHHHHHhhhcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcC---------C
Q 037816          479 ----MEFLKSMTEVHRISPRAEHYACVVDMVGRAG--LLIEARSFIERMPVKP-DVLVWQALLGACSIHG---------D  542 (648)
Q Consensus       479 ----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g---------~  542 (648)
                          +..++++.+.  -+-+...|..+..++...|  ++++|++.+.++...| +...+..+..+|.+.|         .
T Consensus       256 ~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~  333 (382)
T 2h6f_A          256 LEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDI  333 (382)
T ss_dssp             HHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred             HHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHHH
Confidence                5788888763  2336778888888888888  6889998888874444 4677888888888764         2


Q ss_pred             hHHHHHHHHHH-HhcCCCCCccHHHHHHHHHh
Q 037816          543 SEMGKYAAEKL-FLAQPDSPAPYILMANIYSC  573 (648)
Q Consensus       543 ~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~  573 (648)
                      .++|+.+++++ .+.+|.....|..++..+..
T Consensus       334 ~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~  365 (382)
T 2h6f_A          334 LNKALELCEILAKEKDTIRKEYWRYIGRSLQS  365 (382)
T ss_dssp             HHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence            58999999999 89999988888888776654

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.50  E-value=1.3e-12  Score=124.84  Aligned_cols=224  Identities=10%  Similarity=0.061  Sum_probs=167.8

Q ss_pred             HHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC--CC----hhHHHHHHHHHHHc
Q 037816          364 VLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP--RN----SVSWNSMIAAFARH  437 (648)
Q Consensus       364 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~  437 (648)
                      ....+...|+++.|...++.+.+.. +.+...+..+...|...|++++|...+++...  ++    ...|..+...+...
T Consensus         9 ~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~   87 (272)
T 3u4t_A            9 YADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK   87 (272)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence            3344445555555555555554433 33444566666677777777777777766543  22    23477888889999


Q ss_pred             CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHH
Q 037816          438 GNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSF  517 (648)
Q Consensus       438 ~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  517 (648)
                      |++++|+..+++..+.. +.+...+..+...+...|++++|...+++..+.  .+.+...+..+...+...+++++|.+.
T Consensus        88 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~  164 (272)
T 3u4t_A           88 GQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSS  164 (272)
T ss_dssp             TCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998864 336678999999999999999999999999762  333677777787344445699999999


Q ss_pred             HHhC-CCCCC-HHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcC---CCC-----CccHHHHHHHHHhcCChHHHHHHH
Q 037816          518 IERM-PVKPD-VLVWQALLGACSIHGD---SEMGKYAAEKLFLAQ---PDS-----PAPYILMANIYSCSGRWKERAKAI  584 (648)
Q Consensus       518 ~~~~-~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~A~~~~  584 (648)
                      |+++ ...|+ ...+..+..++...|+   +++|+..++++++..   |+.     ..+|..++.+|...|++++|.+.+
T Consensus       165 ~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  244 (272)
T 3u4t_A          165 FVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAW  244 (272)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9988 44454 7778888888888888   888999999998765   442     257888999999999999999999


Q ss_pred             HHHHhCC
Q 037816          585 KRMKEMG  591 (648)
Q Consensus       585 ~~m~~~~  591 (648)
                      ++..+..
T Consensus       245 ~~al~~~  251 (272)
T 3u4t_A          245 KNILALD  251 (272)
T ss_dssp             HHHHHHC
T ss_pred             HHHHhcC
Confidence            9998743

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.50  E-value=2.2e-12  Score=115.28  Aligned_cols=165  Identities=18%  Similarity=0.123  Sum_probs=142.8

Q ss_pred             ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 037816          423 NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVV  502 (648)
Q Consensus       423 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~  502 (648)
                      +...|..+...|...|++++|+..|++..+.. +-+...+..+..++...|++++|...+......  .+.+...+..+.
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~   80 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG   80 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence            45678888889999999999999999988854 336778888889999999999999999998774  344677788888


Q ss_pred             HHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHH
Q 037816          503 DMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKER  580 (648)
Q Consensus       503 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A  580 (648)
                      ..+...++++.|.+.+++. ...| +...+..+..++...|++++|++.++++++.+|.++.++..++.+|.+.|++++|
T Consensus        81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A  160 (184)
T 3vtx_A           81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA  160 (184)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence            8899999999999999887 3334 5778888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhC
Q 037816          581 AKAIKRMKEM  590 (648)
Q Consensus       581 ~~~~~~m~~~  590 (648)
                      ++.+++..+.
T Consensus       161 ~~~~~~al~~  170 (184)
T 3vtx_A          161 VKYFKKALEK  170 (184)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhC
Confidence            9999999874

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.49  E-value=2.1e-12  Score=118.70  Aligned_cols=186  Identities=15%  Similarity=0.027  Sum_probs=77.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhC--
Q 037816          329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKC--  406 (648)
Q Consensus       329 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--  406 (648)
                      +...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++...+.. |.+...+..+..++...  
T Consensus        11 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~   88 (217)
T 2pl2_A           11 LGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYVALYR   88 (217)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhhh
Confidence            3333444444444444444443322 2223333333333333444444444443333332 22333344444444443  


Q ss_pred             ---------CCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc
Q 037816          407 ---------GDLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGL  474 (648)
Q Consensus       407 ---------g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~  474 (648)
                               |++++|+..|++..   +.+...|..+..++...|++++|+..|++..+..  .+...+..+..++...|+
T Consensus        89 ~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~  166 (217)
T 2pl2_A           89 QAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGR  166 (217)
T ss_dssp             TCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTC
T ss_pred             hhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCC
Confidence                     45555555544432   2234444445555555555555555555555544  444455555555555555


Q ss_pred             HHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHh
Q 037816          475 VNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIER  520 (648)
Q Consensus       475 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  520 (648)
                      +++|...|+++.+.  .+.+...+..+...+...|++++|.+.+++
T Consensus       167 ~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~  210 (217)
T 2pl2_A          167 LDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAAL  210 (217)
T ss_dssp             HHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC-------------
T ss_pred             HHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            55555555555442  122444455555555555555555555444

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.49  E-value=2.1e-12  Score=128.75  Aligned_cols=227  Identities=12%  Similarity=0.106  Sum_probs=195.2

Q ss_pred             HHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCC-HHHHHHHHhhcC---CCChhHHHHHHHH
Q 037816          358 PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGD-LEDSIKVFSRMA---PRNSVSWNSMIAA  433 (648)
Q Consensus       358 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~---~~~~~~~~~l~~~  433 (648)
                      ...|..+...+...|++++|...++.+++.. +.+..+|..+..++...|+ +++|+..|+++.   +.+...|..+..+
T Consensus        97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~  175 (382)
T 2h6f_A           97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL  175 (382)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            3556677778888999999999999999876 6678889999999999997 999999999876   4577899999999


Q ss_pred             HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhh-cCCHH
Q 037816          434 FARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR-AGLLI  512 (648)
Q Consensus       434 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~  512 (648)
                      +...|++++|+..|+++++.. +-+...|..+..++...|++++|+..++++.+.  -+-+...|+.+..+|.+ .|..+
T Consensus       176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~  252 (382)
T 2h6f_A          176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND  252 (382)
T ss_dssp             HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred             HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence            999999999999999999965 337889999999999999999999999999884  23478899999999999 66657


Q ss_pred             HH-----HHHHHhC-CCCC-CHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcC--------
Q 037816          513 EA-----RSFIERM-PVKP-DVLVWQALLGACSIHG--DSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSG--------  575 (648)
Q Consensus       513 ~A-----~~~~~~~-~~~p-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--------  575 (648)
                      +|     ++.+++. .+.| +...|..+...+...|  ++++|++.++++ +.+|+++.++..++.+|.+.|        
T Consensus       253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~  331 (382)
T 2h6f_A          253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE  331 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence            77     4777776 4555 4778888888888888  699999999998 889999999999999999875        


Q ss_pred             -ChHHHHHHHHHH-Hh
Q 037816          576 -RWKERAKAIKRM-KE  589 (648)
Q Consensus       576 -~~~~A~~~~~~m-~~  589 (648)
                       .+++|+++++++ .+
T Consensus       332 ~~~~~A~~~~~~l~~~  347 (382)
T 2h6f_A          332 DILNKALELCEILAKE  347 (382)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHH
Confidence             358999999998 55

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.49  E-value=6e-12  Score=116.27  Aligned_cols=205  Identities=11%  Similarity=0.029  Sum_probs=141.2

Q ss_pred             HHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHH
Q 037816          360 MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSMIAAFAR  436 (648)
Q Consensus       360 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~  436 (648)
                      .+..+...+...|+++.|...++.+.+.. +.+...+..+...|...|++++|...++++.   +.+..++..+...+..
T Consensus        10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~   88 (225)
T 2vq2_A           10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCG   88 (225)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            33444444444455555555554444432 3334455556666666666666666666543   2355667777777888


Q ss_pred             c-CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHH
Q 037816          437 H-GNGFKALELYEEMKLEGVEPT-DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEA  514 (648)
Q Consensus       437 ~-~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  514 (648)
                      . |++++|...++++.+.+..|+ ...+..+..++...|++++|...++++.+.  .+.+...+..+...|.+.|++++|
T Consensus        89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A  166 (225)
T 2vq2_A           89 RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDA  166 (225)
T ss_dssp             TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHH
Confidence            8 888888888888877333343 566777788888888888888888888774  233577888888888889999999


Q ss_pred             HHHHHhC-CCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHH
Q 037816          515 RSFIERM-PVK--PDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILM  567 (648)
Q Consensus       515 ~~~~~~~-~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l  567 (648)
                      .+.++++ ...  .+...+..+...+...|+.+.|..+++.+.+..|+++.....+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l  222 (225)
T 2vq2_A          167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL  222 (225)
T ss_dssp             HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence            9888887 323  3566677777778888999999999999988888887655443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.48  E-value=3.3e-13  Score=137.75  Aligned_cols=261  Identities=11%  Similarity=0.053  Sum_probs=173.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCcCH----HHHHHHHHHHhccCChhHHHHHHHHHHHh----C-CCCchhHHHHH
Q 037816          329 ILVGFAQNGFEEEAMQLFVKMVKAGIEIDP----NMVSAVLGVFGVDTSLGLGKQIHSLIIKS----D-FTSNPFVNNGL  399 (648)
Q Consensus       329 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l  399 (648)
                      +...+...|++++|+..|++..+.+. .+.    ..+..+...+...|+++.|...+++..+.    + .+.....+..+
T Consensus        54 ~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  132 (411)
T 4a1s_A           54 EGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL  132 (411)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence            33445555555566555555555421 122    24445555555566666666655554432    1 12233455666


Q ss_pred             HHHHHhCCCHHHHHHHHhhcCCC---------ChhHHHHHHHHHHHcCC-----------------hHHHHHHHHHHHHc
Q 037816          400 INMYSKCGDLEDSIKVFSRMAPR---------NSVSWNSMIAAFARHGN-----------------GFKALELYEEMKLE  453 (648)
Q Consensus       400 i~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~-----------------~~~A~~~~~~m~~~  453 (648)
                      ...|...|++++|...+++...-         ...++..+...|...|+                 +++|+..+++..+.
T Consensus       133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~  212 (411)
T 4a1s_A          133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL  212 (411)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence            66677777777777766654321         23466677777778888                 88888887776542


Q ss_pred             ----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHhhhcCCHHHHHHHHHhC-CC
Q 037816          454 ----GVEP-TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR----AEHYACVVDMVGRAGLLIEARSFIERM-PV  523 (648)
Q Consensus       454 ----~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~  523 (648)
                          +-.+ ...++..+...+...|++++|...+++..+...-.++    ...+..+...|...|++++|.+.+++. ..
T Consensus       213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  292 (411)
T 4a1s_A          213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL  292 (411)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence                1112 2346777778888999999999999888763111111    237788888999999999999998876 11


Q ss_pred             ---CCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------CccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816          524 ---KPD----VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS------PAPYILMANIYSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       524 ---~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  590 (648)
                         ..+    ..++..+...+...|++++|...++++++..+..      ..++..++.+|...|++++|.+++++..+.
T Consensus       293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  372 (411)
T 4a1s_A          293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL  372 (411)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence               111    4667888888999999999999999998764432      348889999999999999999999998763

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.48  E-value=1.6e-11  Score=117.49  Aligned_cols=223  Identities=9%  Similarity=-0.052  Sum_probs=167.3

Q ss_pred             ccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhc----cCChhHHHHHHHHHHHhCCCCchhHHHHH
Q 037816          324 VSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGV----DTSLGLGKQIHSLIIKSDFTSNPFVNNGL  399 (648)
Q Consensus       324 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  399 (648)
                      .++..+...+...|++++|+..|++..+.   .+...+..+...+..    .+++++|...+++..+.+   ++..+..+
T Consensus         7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l   80 (273)
T 1ouv_A            7 KELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL   80 (273)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence            34455555666666777777777666662   234555556666666    777777777777776665   55666677


Q ss_pred             HHHHHh----CCCHHHHHHHHhhcCC-CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 037816          400 INMYSK----CGDLEDSIKVFSRMAP-RNSVSWNSMIAAFAR----HGNGFKALELYEEMKLEGVEPTDVTFLSLLHACS  470 (648)
Q Consensus       400 i~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~  470 (648)
                      ...|..    .+++++|...|++..+ .+...+..+...|..    .+++++|+..|++..+.+   +...+..+...+.
T Consensus        81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~  157 (273)
T 1ouv_A           81 GNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYD  157 (273)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred             HHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHH
Confidence            777777    7888888887776653 356677778888888    889999999999988865   5566777777777


Q ss_pred             c----cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhh----cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHH--
Q 037816          471 H----VGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR----AGLLIEARSFIERM-PVKPDVLVWQALLGACSI--  539 (648)
Q Consensus       471 ~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~--  539 (648)
                      .    .+++++|...+++..+.    .+...+..+...|..    .+++++|.+.+++. ... +...+..+...|..  
T Consensus       158 ~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~l~~~~~~g~  232 (273)
T 1ouv_A          158 AGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-NGGGCFNLGAMQYNGE  232 (273)
T ss_dssp             HTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTS
T ss_pred             cCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcCC
Confidence            6    88999999999998874    256777888888888    99999999999887 333 36778888888888  


Q ss_pred             --cCChHHHHHHHHHHHhcCCCC
Q 037816          540 --HGDSEMGKYAAEKLFLAQPDS  560 (648)
Q Consensus       540 --~g~~~~A~~~~~~~~~~~p~~  560 (648)
                        .+++++|+..++++.+.+|++
T Consensus       233 ~~~~~~~~A~~~~~~a~~~~~~~  255 (273)
T 1ouv_A          233 GVTRNEKQAIENFKKGCKLGAKG  255 (273)
T ss_dssp             SSSCCSTTHHHHHHHHHHHTCHH
T ss_pred             CcccCHHHHHHHHHHHHHcCCHH
Confidence              899999999999999988865

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.47  E-value=1.5e-12  Score=132.45  Aligned_cols=95  Identities=9%  Similarity=-0.001  Sum_probs=51.4

Q ss_pred             chhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-C----cccHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCc-CH
Q 037816          291 DLCIESALMDMYSKCGSVEDAWQIFEFAEE--L-D----GVSMTVILVGFAQNGFEEEAMQLFVKMVKA----GIEI-DP  358 (648)
Q Consensus       291 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~  358 (648)
                      ....+..+...+...|++++|...|++..+  + +    ...+..+...+...|++++|...+++....    +..| ..
T Consensus         8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   87 (406)
T 3sf4_A            8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA   87 (406)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence            344455556666666777777766666543  2 1    124555566666666666666666665432    1111 12


Q ss_pred             HHHHHHHHHHhccCChhHHHHHHHHHH
Q 037816          359 NMVSAVLGVFGVDTSLGLGKQIHSLII  385 (648)
Q Consensus       359 ~~~~~ll~~~~~~~~~~~a~~~~~~~~  385 (648)
                      .++..+...+...|+++.|...++...
T Consensus        88 ~~~~~la~~~~~~g~~~~A~~~~~~al  114 (406)
T 3sf4_A           88 KASGNLGNTLKVLGNFDEAIVCCQRHL  114 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            344445555555566666665555544

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.46  E-value=1.5e-12  Score=128.43  Aligned_cols=260  Identities=13%  Similarity=0.092  Sum_probs=176.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCcC----HHHHHHHHHHHhccCChhHHHHHHHHHHHh----CCC-CchhHHHHHH
Q 037816          330 LVGFAQNGFEEEAMQLFVKMVKAGIEID----PNMVSAVLGVFGVDTSLGLGKQIHSLIIKS----DFT-SNPFVNNGLI  400 (648)
Q Consensus       330 i~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li  400 (648)
                      ...+...|++++|...|++..+.. +.+    ...+..+...+...|+++.|...++.....    +.+ ....++..+.
T Consensus        12 g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~   90 (338)
T 3ro2_A           12 GERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG   90 (338)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence            344555566666666666655542 112    234455555556666666666665554322    111 1244566667


Q ss_pred             HHHHhCCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHcCC--------------------hHHHHHHHHHHH
Q 037816          401 NMYSKCGDLEDSIKVFSRMAP-----RN----SVSWNSMIAAFARHGN--------------------GFKALELYEEMK  451 (648)
Q Consensus       401 ~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~m~  451 (648)
                      ..|...|++++|...+.+..+     ++    ..++..+...+...|+                    +++|...+++..
T Consensus        91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~  170 (338)
T 3ro2_A           91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL  170 (338)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence            777777777777777766531     11    2366677777888888                    888888887765


Q ss_pred             Hc----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC----ChhHHHHHHHHhhhcCCHHHHHHHHHhC-
Q 037816          452 LE----GVEP-TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP----RAEHYACVVDMVGRAGLLIEARSFIERM-  521 (648)
Q Consensus       452 ~~----~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-  521 (648)
                      +.    +..| ....+..+...+...|++++|...+++..+...-.+    ...++..+...|...|++++|.+.+++. 
T Consensus       171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  250 (338)
T 3ro2_A          171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL  250 (338)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            42    1112 234677778888899999999999998875311111    2347888889999999999999999876 


Q ss_pred             ---CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------CccHHHHHHHHHhcCChHHHHHHHHHHH
Q 037816          522 ---PVKPD----VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS------PAPYILMANIYSCSGRWKERAKAIKRMK  588 (648)
Q Consensus       522 ---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~  588 (648)
                         +..++    ..++..+...+...|++++|...++++++..|..      ..++..++.+|...|++++|.+++++..
T Consensus       251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  330 (338)
T 3ro2_A          251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL  330 (338)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence               11122    5567788888999999999999999998765432      3478899999999999999999999988


Q ss_pred             hC
Q 037816          589 EM  590 (648)
Q Consensus       589 ~~  590 (648)
                      +.
T Consensus       331 ~~  332 (338)
T 3ro2_A          331 EI  332 (338)
T ss_dssp             HC
T ss_pred             HH
Confidence            74

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.44  E-value=1.2e-12  Score=135.66  Aligned_cols=192  Identities=9%  Similarity=0.008  Sum_probs=162.7

Q ss_pred             CchhHHHHHHHHHHhCCCH-HHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037816          391 SNPFVNNGLINMYSKCGDL-EDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL  466 (648)
Q Consensus       391 ~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll  466 (648)
                      .+...+..+...|...|++ ++|++.|++..   +.+...|..+..+|...|++++|...|++..+.  .|+...+..+.
T Consensus       100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg  177 (474)
T 4abn_A          100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLS  177 (474)
T ss_dssp             CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHH
Confidence            4556666666777777777 77777776654   335678888888999999999999999999885  47788888888


Q ss_pred             HHHhcc---------CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhc--------CCHHHHHHHHHhC-CCCC---
Q 037816          467 HACSHV---------GLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA--------GLLIEARSFIERM-PVKP---  525 (648)
Q Consensus       467 ~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~-~~~p---  525 (648)
                      ..+...         |++++|...++++.+.  .+.+...|..+..+|...        |++++|++.|++. ...|   
T Consensus       178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~  255 (474)
T 4abn_A          178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS  255 (474)
T ss_dssp             HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred             HHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcc
Confidence            999998         9999999999999874  334788899999999988        9999999999988 5455   


Q ss_pred             -CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHH
Q 037816          526 -DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKR  586 (648)
Q Consensus       526 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  586 (648)
                       +...|..+..+|...|++++|+..++++++.+|.++.++..++.++...|++++|++.+++
T Consensus       256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~  317 (474)
T 4abn_A          256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK  317 (474)
T ss_dssp             GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence             6888999999999999999999999999999999999999999999999999999976544

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.43  E-value=2.5e-12  Score=123.08  Aligned_cols=218  Identities=10%  Similarity=-0.019  Sum_probs=179.8

Q ss_pred             hccCChhHHHHHHHHHHHhCC---CCchhHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHH
Q 037816          369 GVDTSLGLGKQIHSLIIKSDF---TSNPFVNNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFK  442 (648)
Q Consensus       369 ~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~  442 (648)
                      ...|++++|...++.+.+...   +.+..++..+...+...|++++|...|+++.   +.+..+|..+...|...|++++
T Consensus        16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~   95 (275)
T 1xnf_A           16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA   95 (275)
T ss_dssp             CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred             CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence            455789999999999987642   2346788899999999999999999999875   4468899999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-
Q 037816          443 ALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-  521 (648)
Q Consensus       443 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-  521 (648)
                      |...+++..+.. +.+...+..+..++...|++++|...++++.+.   .|+..........+...|++++|...+++. 
T Consensus        96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  171 (275)
T 1xnf_A           96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF  171 (275)
T ss_dssp             HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            999999999864 336788899999999999999999999999874   455445555556667789999999999776 


Q ss_pred             -CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC----CCccHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037816          522 -PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD----SPAPYILMANIYSCSGRWKERAKAIKRMKEMG  591 (648)
Q Consensus       522 -~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  591 (648)
                       ...++...+ .++..+...++.++|+..++++++..|.    ++.++..++.+|...|++++|...+++..+..
T Consensus       172 ~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  245 (275)
T 1xnf_A          172 EKSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN  245 (275)
T ss_dssp             HHSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             hcCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence             223333333 4667778888999999999999877663    36889999999999999999999999998754

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.43  E-value=8.6e-10  Score=117.36  Aligned_cols=217  Identities=9%  Similarity=0.036  Sum_probs=166.2

Q ss_pred             HHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHH-HHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhh
Q 037816          340 EEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGK-QIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSR  418 (648)
Q Consensus       340 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  418 (648)
                      +.+..+|++.... .+-+...|.....-+...|+.+.|. .+++..... +|.+...+-..+...-+.|+++.|.++|+.
T Consensus       326 ~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek  403 (679)
T 4e6h_A          326 ARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILS  403 (679)
T ss_dssp             HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            3455678777765 3556777777777777888888896 999998864 466777788888888999999999999987


Q ss_pred             cCC-------------CC------------hhHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhc-
Q 037816          419 MAP-------------RN------------SVSWNSMIAAFARHGNGFKALELYEEMKLE-GVEPTDVTFLSLLHACSH-  471 (648)
Q Consensus       419 ~~~-------------~~------------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~~~-  471 (648)
                      +..             |+            ...|...+....+.|+.+.|..+|.+..+. + .+....|...+..-.+ 
T Consensus       404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~  482 (679)
T 4e6h_A          404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHI  482 (679)
T ss_dssp             HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHh
Confidence            753             21            235777788888889999999999999876 2 1223334333222223 


Q ss_pred             cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHHHcCChHHH
Q 037816          472 VGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP----DVLVWQALLGACSIHGDSEMG  546 (648)
Q Consensus       472 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~A  546 (648)
                      .++.+.|..+|+...+.  ++.+...+...++.....|+.+.|..+|++. ...|    ....|...+..-.+.|+.+.+
T Consensus       483 ~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~  560 (679)
T 4e6h_A          483 SKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSV  560 (679)
T ss_dssp             TSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHH
T ss_pred             CCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            35689999999999985  4456777788899888999999999999997 3333    246688888888889999999


Q ss_pred             HHHHHHHHhcCCCCC
Q 037816          547 KYAAEKLFLAQPDSP  561 (648)
Q Consensus       547 ~~~~~~~~~~~p~~~  561 (648)
                      ..+.+++.+..|+++
T Consensus       561 ~~v~~R~~~~~P~~~  575 (679)
T 4e6h_A          561 RTLEKRFFEKFPEVN  575 (679)
T ss_dssp             HHHHHHHHHHSTTCC
T ss_pred             HHHHHHHHHhCCCCc
Confidence            999999999999875

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.41  E-value=1.6e-12  Score=132.24  Aligned_cols=297  Identities=12%  Similarity=0.009  Sum_probs=202.2

Q ss_pred             CCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHhccC-----C----
Q 037816          254 NPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSD---LCIESALMDMYSKCGSVEDAWQIFEFAEE-----L----  321 (648)
Q Consensus       254 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~----  321 (648)
                      .+....+......+...|++++|...++.+.+.+....   ..++..+...|...|++++|...+++...     .    
T Consensus         6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   85 (406)
T 3sf4_A            6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG   85 (406)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence            34455666777788999999999999999998742211   35788899999999999999999987643     1    


Q ss_pred             CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cC----HHHHHHHHHHHhccCC--------------------hhH
Q 037816          322 DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIE-ID----PNMVSAVLGVFGVDTS--------------------LGL  376 (648)
Q Consensus       322 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~ll~~~~~~~~--------------------~~~  376 (648)
                      ....+..+...+...|++++|...+++..+.... ++    ..++..+...+...|+                    ++.
T Consensus        86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~  165 (406)
T 3sf4_A           86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA  165 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence            2446777888999999999999999988753110 11    2244444555555555                    444


Q ss_pred             HHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCC--ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 037816          377 GKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPR--NSVSWNSMIAAFARHGNGFKALELYEEMKLEG  454 (648)
Q Consensus       377 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~  454 (648)
                      |...+.....                            ++.....+  ...++..+...|...|++++|...+++..+..
T Consensus       166 A~~~~~~al~----------------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  217 (406)
T 3sf4_A          166 AVDFYEENLS----------------------------LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA  217 (406)
T ss_dssp             HHHHHHHHHH----------------------------HHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH----------------------------HHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence            4444333221                            11111111  12356667777777788888888777766421


Q ss_pred             C-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC----ChhHHHHHHHHhhhcCCHHHHHHHHHhC----
Q 037816          455 V-EPT----DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP----RAEHYACVVDMVGRAGLLIEARSFIERM----  521 (648)
Q Consensus       455 ~-~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~----  521 (648)
                      . .++    ..++..+...+...|++++|...+++..+...-.+    ...++..+...|...|++++|.+.+++.    
T Consensus       218 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  297 (406)
T 3sf4_A          218 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA  297 (406)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence            0 122    23667777788888888888888888765311111    1557778888888999999998888876    


Q ss_pred             CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC------CCCccHHHHHHHHHhcCChH
Q 037816          522 PVKPD----VLVWQALLGACSIHGDSEMGKYAAEKLFLAQP------DSPAPYILMANIYSCSGRWK  578 (648)
Q Consensus       522 ~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~  578 (648)
                      +..++    ..++..+...|...|++++|...++++++..+      ....++..++.++...|+..
T Consensus       298 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  364 (406)
T 3sf4_A          298 QELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY  364 (406)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence            11122    55677888889999999999999999886532      23457778888888888764

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.37  E-value=6.3e-12  Score=128.19  Aligned_cols=270  Identities=14%  Similarity=0.018  Sum_probs=161.2

Q ss_pred             HHHHHhhccCChHHHHHHHHHHHHhcCCCch----hHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHHcC
Q 037816          262 SSVMACSGLQALCEGRQIHGILWKLALQSDL----CIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNG  337 (648)
Q Consensus       262 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~  337 (648)
                      .+...+...|++++|...++.+.+.+.. +.    .++..+...|...|++++|...+++..+.                
T Consensus        53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----------------  115 (411)
T 4a1s_A           53 LEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTL----------------  115 (411)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----------------
Confidence            3444555566666666666666554311 11    24455555555555555555555443220                


Q ss_pred             CHHHHHHHHHHHHHcCC-CcCHHHHHHHHHHHhccCChhHHHHHHHHHHHh----C-CCCchhHHHHHHHHHHhCCC---
Q 037816          338 FEEEAMQLFVKMVKAGI-EIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS----D-FTSNPFVNNGLINMYSKCGD---  408 (648)
Q Consensus       338 ~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~g~---  408 (648)
                                 ....+. +.....+..+...+...|+++.|...++.+.+.    + .+....++..+...|...|+   
T Consensus       116 -----------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  184 (411)
T 4a1s_A          116 -----------AKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLG  184 (411)
T ss_dssp             -----------HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----------HHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccc
Confidence                       000000 111233333444444444444444444443322    1 11123345555666666666   


Q ss_pred             --------------HHHHHHHHhhcCC-------C--ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HH
Q 037816          409 --------------LEDSIKVFSRMAP-------R--NSVSWNSMIAAFARHGNGFKALELYEEMKLEGV-EPT----DV  460 (648)
Q Consensus       409 --------------~~~A~~~~~~~~~-------~--~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~----~~  460 (648)
                                    +++|...+.+..+       +  ...++..+...|...|++++|...+++..+... .++    ..
T Consensus       185 ~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  264 (411)
T 4a1s_A          185 QRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERR  264 (411)
T ss_dssp             HHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             cccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence                          6666666554421       1  234677777888888888888888888765310 012    23


Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC----ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CC---CCC----HH
Q 037816          461 TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP----RAEHYACVVDMVGRAGLLIEARSFIERM-PV---KPD----VL  528 (648)
Q Consensus       461 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~----~~  528 (648)
                      .+..+...+...|++++|...+++..+...-..    ...++..+...|...|++++|.+.+++. ..   .++    ..
T Consensus       265 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  344 (411)
T 4a1s_A          265 ANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEAR  344 (411)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHH
Confidence            677788888999999999999988876311111    2567788889999999999999999877 11   112    44


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 037816          529 VWQALLGACSIHGDSEMGKYAAEKLFLAQPD  559 (648)
Q Consensus       529 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  559 (648)
                      ++..+..+|...|++++|...++++++..+.
T Consensus       345 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  375 (411)
T 4a1s_A          345 ACWSLGNAHSAIGGHERALKYAEQHLQLAXX  375 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence            6778888999999999999999999877653

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.36  E-value=2.5e-11  Score=108.31  Aligned_cols=167  Identities=13%  Similarity=0.112  Sum_probs=141.6

Q ss_pred             CchhHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037816          391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLH  467 (648)
Q Consensus       391 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~  467 (648)
                      .++.+|..+...|...|++++|+..|++..   +.+..+|..+..+|.+.|++++|...+.+..... +.+...+..+..
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~   81 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS   81 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence            356678888888999999999999998765   3467788889999999999999999999988764 345667777788


Q ss_pred             HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHH
Q 037816          468 ACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEM  545 (648)
Q Consensus       468 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~  545 (648)
                      .+...++++.|...+.+..+.  .+.+...+..+...|.+.|++++|++.|++. ...| +...|..+..+|.+.|++++
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence            889999999999999999874  3447888899999999999999999999988 4444 57889999999999999999


Q ss_pred             HHHHHHHHHhcCCCC
Q 037816          546 GKYAAEKLFLAQPDS  560 (648)
Q Consensus       546 A~~~~~~~~~~~p~~  560 (648)
                      |+..++++++.+|++
T Consensus       160 A~~~~~~al~~~p~~  174 (184)
T 3vtx_A          160 AVKYFKKALEKEEKK  174 (184)
T ss_dssp             HHHHHHHHHHTTHHH
T ss_pred             HHHHHHHHHhCCccC
Confidence            999999999999875

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.36  E-value=1.1e-11  Score=125.24  Aligned_cols=195  Identities=10%  Similarity=0.002  Sum_probs=115.1

Q ss_pred             hHHHHHHHHHHhCCCHHHHHHHHhhcCC-----C-----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----
Q 037816          394 FVNNGLINMYSKCGDLEDSIKVFSRMAP-----R-----NSVSWNSMIAAFARHGNGFKALELYEEMKLEGV-EPT----  458 (648)
Q Consensus       394 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~----  458 (648)
                      .++..+...|...|++++|...+.+..+     +     ...+++.+...|...|++++|+..+++..+... .++    
T Consensus       144 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  223 (383)
T 3ulq_A          144 EFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLM  223 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHH
Confidence            3445555555556665555555544321     1     123556666666777777777777766654210 011    


Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHhHHhc---CC-CCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CC-----CCC-H
Q 037816          459 DVTFLSLLHACSHVGLVNKGMEFLKSMTEVH---RI-SPRAEHYACVVDMVGRAGLLIEARSFIERM-PV-----KPD-V  527 (648)
Q Consensus       459 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-----~p~-~  527 (648)
                      ..++..+..+|...|++++|...+++..+..   +. +....++..+...|.+.|++++|.+.+++. .+     .|. .
T Consensus       224 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  303 (383)
T 3ulq_A          224 GRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYL  303 (383)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            1356666677777777777777777765510   12 224556667777777777777777777665 11     111 2


Q ss_pred             HHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037816          528 LVWQALLGACSIHGD---SEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKE  589 (648)
Q Consensus       528 ~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  589 (648)
                      ..+..+...+...|+   .++|+.++++. ...|....++..++.+|...|++++|.+++++..+
T Consensus       304 ~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          304 SEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             HHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            224455566666677   66666666655 22233445677778888888888888888877755

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.34  E-value=3.9e-10  Score=109.76  Aligned_cols=219  Identities=10%  Similarity=0.073  Sum_probs=148.0

Q ss_pred             HHHHHHHHHHHHcCCCcCHHHHHHHHHHHh-------ccCCh-------hHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 037816          340 EEAMQLFVKMVKAGIEIDPNMVSAVLGVFG-------VDTSL-------GLGKQIHSLIIKSDFTSNPFVNNGLINMYSK  405 (648)
Q Consensus       340 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~  405 (648)
                      ++|...|++..... +.+...|..+...+.       ..|++       ++|..++++..+.-.+.+...|..++..+.+
T Consensus        33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~  111 (308)
T 2ond_A           33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  111 (308)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence            56777777776643 345555655555543       34665       7777777777763224455677777777778


Q ss_pred             CCCHHHHHHHHhhcCC--C-Chh-HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-hccCcHHHHHH
Q 037816          406 CGDLEDSIKVFSRMAP--R-NSV-SWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHAC-SHVGLVNKGME  480 (648)
Q Consensus       406 ~g~~~~A~~~~~~~~~--~-~~~-~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~g~~~~A~~  480 (648)
                      .|++++|..+|+++.+  | +.. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|++++|..
T Consensus       112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~  190 (308)
T 2ond_A          112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK  190 (308)
T ss_dssp             TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence            8888888888877653  2 333 67777777778888888888888887754 23344443333222 23578888888


Q ss_pred             HHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 037816          481 FLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-P---VKP--DVLVWQALLGACSIHGDSEMGKYAAEKLF  554 (648)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  554 (648)
                      +|++..+.  .+.+...|..++..+.+.|++++|..+|++. .   ..|  ....|..++....+.|+.+.|..+++++.
T Consensus       191 ~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~  268 (308)
T 2ond_A          191 IFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF  268 (308)
T ss_dssp             HHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            88888764  2336777777888888888888888888777 2   244  35667777777777888888888888888


Q ss_pred             hcCCCCCc
Q 037816          555 LAQPDSPA  562 (648)
Q Consensus       555 ~~~p~~~~  562 (648)
                      +..|++..
T Consensus       269 ~~~p~~~~  276 (308)
T 2ond_A          269 TAFREEYE  276 (308)
T ss_dssp             HHTTTTTS
T ss_pred             HHcccccc
Confidence            88877543

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.34  E-value=2.2e-12  Score=125.86  Aligned_cols=235  Identities=11%  Similarity=0.086  Sum_probs=120.3

Q ss_pred             ccHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHh------CC-
Q 037816          324 VSMTVILVGFAQNGFEEEAMQLFVKMVKA-------GIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS------DF-  389 (648)
Q Consensus       324 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-  389 (648)
                      .++..+...+...|++++|..+++++.+.       ..+.....+..+...+...|++++|...++.+...      +. 
T Consensus        28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  107 (311)
T 3nf1_A           28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH  107 (311)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence            45666777788888888888888887663       22233445556666666666777666666665543      11 


Q ss_pred             CCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCC-CHHHH
Q 037816          390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE------GVEP-TDVTF  462 (648)
Q Consensus       390 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~------~~~p-~~~~~  462 (648)
                      +....++..+...|...|++++|...|                               ++..+.      +-.| ....+
T Consensus       108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~-------------------------------~~a~~~~~~~~~~~~~~~~~~~  156 (311)
T 3nf1_A          108 PAVAATLNNLAVLYGKRGKYKEAEPLC-------------------------------KRALEIREKVLGKDHPDVAKQL  156 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHH-------------------------------HHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCcHHHHHHHH-------------------------------HHHHHHHHHhcCCCChHHHHHH
Confidence            122334444445555555555555444                               444332      1111 12334


Q ss_pred             HHHHHHHhccCcHHHHHHHHHHhHHhc-----CCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhC-C---------CCCC
Q 037816          463 LSLLHACSHVGLVNKGMEFLKSMTEVH-----RISP-RAEHYACVVDMVGRAGLLIEARSFIERM-P---------VKPD  526 (648)
Q Consensus       463 ~~ll~~~~~~g~~~~A~~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---------~~p~  526 (648)
                      ..+...+...|++++|..+++++.+..     +..| ...++..+...|...|++++|.+.++++ .         ..+.
T Consensus       157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  236 (311)
T 3nf1_A          157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE  236 (311)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence            444555555555555555555554320     0011 2334555555555555555555555544 0         0111


Q ss_pred             -------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037816          527 -------VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKE  589 (648)
Q Consensus       527 -------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  589 (648)
                             ...+..+...+...+.+.++...++.+....|....++..++.+|...|++++|.+++++..+
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  306 (311)
T 3nf1_A          237 NKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR  306 (311)
T ss_dssp             -CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence                   111222223334455666666677777777777777888888888888888888888887765

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.33  E-value=4.1e-11  Score=106.74  Aligned_cols=161  Identities=16%  Similarity=0.049  Sum_probs=100.5

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhh
Q 037816          427 WNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG  506 (648)
Q Consensus       427 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~  506 (648)
                      |..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.  .+.+...+..+...+.
T Consensus        11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~   87 (186)
T 3as5_A           11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV   87 (186)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence            3334444445555555555555544322 224445555555555556666666666655542  2234555555666666


Q ss_pred             hcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHH
Q 037816          507 RAGLLIEARSFIERM-P-VKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAI  584 (648)
Q Consensus       507 ~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  584 (648)
                      ..|++++|.+.++++ . .+.+...+..+...+...|++++|...++++++..|.++.++..++.++...|++++|.+.+
T Consensus        88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  167 (186)
T 3as5_A           88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF  167 (186)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence            666666666666655 1 22345667777777778888888888888888888877778888888888888888888888


Q ss_pred             HHHHhC
Q 037816          585 KRMKEM  590 (648)
Q Consensus       585 ~~m~~~  590 (648)
                      +++.+.
T Consensus       168 ~~~~~~  173 (186)
T 3as5_A          168 KKANEL  173 (186)
T ss_dssp             HHHHHH
T ss_pred             HHHHHc
Confidence            877654

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.33  E-value=2.2e-11  Score=120.00  Aligned_cols=267  Identities=14%  Similarity=0.037  Sum_probs=160.2

Q ss_pred             HHHHHhhccCChHHHHHHHHHHHHhcCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHhccCC---------CcccHHHH
Q 037816          262 SSVMACSGLQALCEGRQIHGILWKLALQSD---LCIESALMDMYSKCGSVEDAWQIFEFAEEL---------DGVSMTVI  329 (648)
Q Consensus       262 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~l  329 (648)
                      .....+...|++++|...++.+.+......   ...+..+...|...|++++|.+.+++....         ....+..+
T Consensus        10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l   89 (338)
T 3ro2_A           10 LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL   89 (338)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence            344455666777777777777666532111   244555666666666666666665544320         12234444


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCC-CcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCC
Q 037816          330 LVGFAQNGFEEEAMQLFVKMVKAGI-EIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGD  408 (648)
Q Consensus       330 i~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  408 (648)
                      ...+...|++++|...+++..+... .++..                               ....++..+...|...|+
T Consensus        90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------------~~~~~~~~l~~~~~~~~~  138 (338)
T 3ro2_A           90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKV-------------------------------GEARALYNLGNVYHAKGK  138 (338)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-------------------------------HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHHHHHhcCch-------------------------------HHHHHHHHHHHHHHHcCc
Confidence            4455555555555555554433210 00100                               012244445555555555


Q ss_pred             --------------------HHHHHHHHhhcCC-------C--ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC
Q 037816          409 --------------------LEDSIKVFSRMAP-------R--NSVSWNSMIAAFARHGNGFKALELYEEMKLEGV-EPT  458 (648)
Q Consensus       409 --------------------~~~A~~~~~~~~~-------~--~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~  458 (648)
                                          +++|...+++...       +  ....+..+...+...|++++|...+++..+... .++
T Consensus       139 ~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~  218 (338)
T 3ro2_A          139 SFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD  218 (338)
T ss_dssp             TSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             ccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC
Confidence                                5555555544321       1  134566777788888888888888887764210 111


Q ss_pred             ----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC----ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CC---CCC
Q 037816          459 ----DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP----RAEHYACVVDMVGRAGLLIEARSFIERM-PV---KPD  526 (648)
Q Consensus       459 ----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~  526 (648)
                          ..++..+...+...|++++|...+++..+...-.+    ...++..+...|...|++++|...+++. ..   .++
T Consensus       219 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  298 (338)
T 3ro2_A          219 KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD  298 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Confidence                23677777888889999999999888765311111    2567778888999999999999988876 11   112


Q ss_pred             ----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 037816          527 ----VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD  559 (648)
Q Consensus       527 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  559 (648)
                          ..++..+...|...|++++|...++++++..+.
T Consensus       299 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  335 (338)
T 3ro2_A          299 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  335 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred             cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence                446778888899999999999999999887654

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.33  E-value=2.7e-09  Score=113.55  Aligned_cols=435  Identities=10%  Similarity=0.023  Sum_probs=231.5

Q ss_pred             CCCcchHHHHHHHHhccCCCcchhHHHHHHhhhcCCCCCcCcCCCCChHHHHHHHHHHHhcCCC---hhHHHHhhccCC-
Q 037816           41 LDNYVDISRLLSISAKEGHFHLGPSLHASFIKTFEPFDNQNVYNVPNATVIWNSLLSFYLKCDQ---MRNAVKLFDDMP-  116 (648)
Q Consensus        41 p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~-  116 (648)
                      |.|...+..++..+.+.+++..++.+|+.+...   +        |.+...|...+..-.+.|+   ++.+..+|+... 
T Consensus        63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~---f--------P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~  131 (679)
T 4e6h_A           63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR---F--------PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLS  131 (679)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---C--------TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTC
T ss_pred             cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH---C--------CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHH
Confidence            445566666777766667777777777777766   3        5556667777776666666   777777776654 


Q ss_pred             -C---CCcccHHHHHHHHHhcCCc--------hHHHHHHHHHHH-cCC-CCCcHhHHHHHHHHhhc---------cCChH
Q 037816          117 -M---RDTVSWNTMVSGFLRNGEF--------DMGFGFFKRSLE-LGF-YQLDQASFTIILSACDR---------SELSL  173 (648)
Q Consensus       117 -~---~~~~~y~~li~~~~~~g~~--------~~A~~~~~~m~~-~~~-~p~~~~~~~~ll~~~~~---------~~~~~  173 (648)
                       -   |++..|...+.-..+.++.        +.+.++|++... .|. .|+....|...+.....         .++.+
T Consensus       132 ~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~  211 (679)
T 4e6h_A          132 KELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQ  211 (679)
T ss_dssp             SSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHH
T ss_pred             hcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHH
Confidence             2   5555555555544444332        223356665443 254 45544355555444322         22345


Q ss_pred             HHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccCCCCcccHHHHHHHHHHCCCchHHHHHHHHHHh--C
Q 037816          174 VSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHL--G  251 (648)
Q Consensus       174 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~  251 (648)
                      .+..+++..+......-..+|......--..+. ..+.+++.+                 ...+++.|...+.++..  .
T Consensus       212 ~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e-----------------~~~~y~~Ar~~~~e~~~~~~  273 (679)
T 4e6h_A          212 YIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGE-----------------LSAQYMNARSLYQDWLNITK  273 (679)
T ss_dssp             HHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHH-----------------HHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHH
Confidence            556666665532111111222221111100000 001111100                 00112222222222110  0


Q ss_pred             CCC---------------C-----C---hhhHHHHHHHhhccC-------ChHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 037816          252 LIN---------------P-----N---SLTYLSSVMACSGLQ-------ALCEGRQIHGILWKLALQSDLCIESALMDM  301 (648)
Q Consensus       252 ~~~---------------p-----~---~~t~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  301 (648)
                      ++.               |     +   ...|...+..-...+       ..+.+..+|++.+.. .+.+..+|...+..
T Consensus       274 ~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~  352 (679)
T 4e6h_A          274 GLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANY  352 (679)
T ss_dssp             TCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHH
T ss_pred             hHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHH
Confidence            000               1     1   112222222222111       122344556666554 24456666666666


Q ss_pred             HHhcCCHHHHH-HHHHhccC--C-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---------CcC-----------
Q 037816          302 YSKCGSVEDAW-QIFEFAEE--L-DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGI---------EID-----------  357 (648)
Q Consensus       302 ~~~~~~~~~A~-~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---------~p~-----------  357 (648)
                      +...|+.++|. ++|++...  | +...|-..+...-..|+++.|.++|+++.....         .|+           
T Consensus       353 ~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~  432 (679)
T 4e6h_A          353 QGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSK  432 (679)
T ss_dssp             HHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccc
Confidence            66677766665 77766554  2 223344555566667777777777777665310         121           


Q ss_pred             -HHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhC-CCHHHHHHHHhhcC---CCChhHHHHHHH
Q 037816          358 -PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKC-GDLEDSIKVFSRMA---PRNSVSWNSMIA  432 (648)
Q Consensus       358 -~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~---~~~~~~~~~l~~  432 (648)
                       ...|...+....+.|..+.|..+|..+.+.-...+..+|...+..-.+. ++.+.|..+|+...   +.+...|...+.
T Consensus       433 ~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~  512 (679)
T 4e6h_A          433 LTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLD  512 (679)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence             2356666777777788888888888887651112233343333333344 44888888888765   345666777777


Q ss_pred             HHHHcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhc
Q 037816          433 AFARHGNGFKALELYEEMKLEGVEP--TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA  508 (648)
Q Consensus       433 ~~~~~~~~~~A~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  508 (648)
                      .....|+.+.|..+|++.......+  ....|...+.--...|+.+.+..+.+++.+.   .|+......+++-|.-.
T Consensus       513 fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~---~P~~~~~~~f~~ry~~~  587 (679)
T 4e6h_A          513 FLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK---FPEVNKLEEFTNKYKVL  587 (679)
T ss_dssp             HHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH---STTCCHHHHHHHHTCBT
T ss_pred             HHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCcHHHHHHHHhcCC
Confidence            7777888888888888888754222  2345666666667788888888888888875   35555555566665443

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.33  E-value=1e-10  Score=118.00  Aligned_cols=229  Identities=7%  Similarity=-0.036  Sum_probs=166.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHc----CCCc-CHHHHHHHHHHHhccCChhHHHHHHHHHHHhC--C----CCchhHHH
Q 037816          329 ILVGFAQNGFEEEAMQLFVKMVKA----GIEI-DPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD--F----TSNPFVNN  397 (648)
Q Consensus       329 li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~~~~~  397 (648)
                      ....+...|++++|+..|++..+.    +-.+ ...++..+...+...|+++.|...+.+..+.-  .    +....++.
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  188 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS  188 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            344566677777777777777653    1111 23456666677777777777777777666431  1    11234677


Q ss_pred             HHHHHHHhCCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC-CHHHHH
Q 037816          398 GLINMYSKCGDLEDSIKVFSRMAP-----RN----SVSWNSMIAAFARHGNGFKALELYEEMKLE----GVEP-TDVTFL  463 (648)
Q Consensus       398 ~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~~~~~  463 (648)
                      .+...|...|++++|...|++..+     ++    ..++..+...|...|++++|+..+++..+.    +..| ...++.
T Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  268 (383)
T 3ulq_A          189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF  268 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence            788888889999999888877642     11    247788889999999999999999998762    3323 456788


Q ss_pred             HHHHHHhccCcHHHHHHHHHHhHHhc---CCCCChhHHHHHHHHhhhcCC---HHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 037816          464 SLLHACSHVGLVNKGMEFLKSMTEVH---RISPRAEHYACVVDMVGRAGL---LIEARSFIERMPVKPD-VLVWQALLGA  536 (648)
Q Consensus       464 ~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~l~~~  536 (648)
                      .+...+...|++++|...+++..+..   +.+.....+..+...|...|+   +++|+.++++.+..|+ ...+..+...
T Consensus       269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~  348 (383)
T 3ulq_A          269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY  348 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            88999999999999999999987631   112223346778889999999   9999999999855544 4457778889


Q ss_pred             HHHcCChHHHHHHHHHHHhcC
Q 037816          537 CSIHGDSEMGKYAAEKLFLAQ  557 (648)
Q Consensus       537 ~~~~g~~~~A~~~~~~~~~~~  557 (648)
                      |...|++++|...++++++..
T Consensus       349 y~~~g~~~~A~~~~~~al~~~  369 (383)
T 3ulq_A          349 YHERKNFQKASAYFLKVEQVR  369 (383)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHH
Confidence            999999999999999998653

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.32  E-value=2.6e-11  Score=130.67  Aligned_cols=162  Identities=17%  Similarity=0.204  Sum_probs=141.5

Q ss_pred             ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHH
Q 037816          423 NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP-TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP-RAEHYAC  500 (648)
Q Consensus       423 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~  500 (648)
                      +..+|+.|...|.+.|++++|++.|++..+..  | +...+..+..++.+.|++++|+..|+++.+.   .| +...|..
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~n   82 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSN   82 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence            35678888888888999999999999888853  5 5678888889999999999999999998874   44 6788999


Q ss_pred             HHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChH
Q 037816          501 VVDMVGRAGLLIEARSFIERM-PVKPD-VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWK  578 (648)
Q Consensus       501 l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~  578 (648)
                      +..+|.+.|++++|++.|++. .+.|+ ...|..+..+|.+.|++++|++.|+++++++|+++.++..++.+|...|+++
T Consensus        83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~  162 (723)
T 4gyw_A           83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT  162 (723)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence            999999999999999999887 55564 7789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 037816          579 ERAKAIKRMKE  589 (648)
Q Consensus       579 ~A~~~~~~m~~  589 (648)
                      +|.+.++++.+
T Consensus       163 ~A~~~~~kal~  173 (723)
T 4gyw_A          163 DYDERMKKLVS  173 (723)
T ss_dssp             THHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988765

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.29  E-value=2e-09  Score=107.94  Aligned_cols=257  Identities=11%  Similarity=-0.016  Sum_probs=136.2

Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCCcCHH----HHHHHHHHHhccCChhHHHHHHHHHHHhCC-CCc----hhHHHHHHHHH
Q 037816          333 FAQNGFEEEAMQLFVKMVKAGIEIDPN----MVSAVLGVFGVDTSLGLGKQIHSLIIKSDF-TSN----PFVNNGLINMY  403 (648)
Q Consensus       333 ~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~  403 (648)
                      +...|++++|...+++........+..    .+..+...+...|+++.|...+++.....- ..+    ..++..+...+
T Consensus        24 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~  103 (373)
T 1hz4_A           24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL  103 (373)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence            334455555555555444432111111    223333344445555555555544432110 001    12234455556


Q ss_pred             HhCCCHHHHHHHHhhcCC----------C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC--C--CHHHHHHHHHH
Q 037816          404 SKCGDLEDSIKVFSRMAP----------R-NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVE--P--TDVTFLSLLHA  468 (648)
Q Consensus       404 ~~~g~~~~A~~~~~~~~~----------~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~--p--~~~~~~~ll~~  468 (648)
                      ...|++++|...+++...          + ....+..+...+...|++++|...+++..+....  +  ...++..+...
T Consensus       104 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~  183 (373)
T 1hz4_A          104 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC  183 (373)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Confidence            666666666666654421          1 1224445566666777777777777766653211  1  12455566666


Q ss_pred             HhccCcHHHHHHHHHHhHHhcCCCCChhHHH-----HHHHHhhhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHH
Q 037816          469 CSHVGLVNKGMEFLKSMTEVHRISPRAEHYA-----CVVDMVGRAGLLIEARSFIERM-PVKPD-----VLVWQALLGAC  537 (648)
Q Consensus       469 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~  537 (648)
                      +...|++++|...+++......-......+.     ..+..+...|++++|...+++. ...|.     ...+..+...+
T Consensus       184 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~  263 (373)
T 1hz4_A          184 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ  263 (373)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHH
Confidence            7777777777777777655311111111111     2233466777777777777776 22221     22455666677


Q ss_pred             HHcCChHHHHHHHHHHHhcCCCC------CccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037816          538 SIHGDSEMGKYAAEKLFLAQPDS------PAPYILMANIYSCSGRWKERAKAIKRMKE  589 (648)
Q Consensus       538 ~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  589 (648)
                      ...|++++|...++++.+..+..      ..++..++.++...|++++|...+++..+
T Consensus       264 ~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~  321 (373)
T 1hz4_A          264 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  321 (373)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            77778887777777776543221      13556667777777888888777777654

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.27  E-value=4.9e-10  Score=109.07  Aligned_cols=212  Identities=12%  Similarity=0.025  Sum_probs=171.5

Q ss_pred             hHHHHHHHHHHHhCCCCchhHHHHHHHHHH-------hCCCH-------HHHHHHHhhcCC---C-ChhHHHHHHHHHHH
Q 037816          375 GLGKQIHSLIIKSDFTSNPFVNNGLINMYS-------KCGDL-------EDSIKVFSRMAP---R-NSVSWNSMIAAFAR  436 (648)
Q Consensus       375 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~l~~~~~~  436 (648)
                      ++|..+|+.+.... +.++..|..++..+.       +.|++       ++|..+|++...   | +...|..++..+.+
T Consensus        33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~  111 (308)
T 2ond_A           33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  111 (308)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence            57778888888764 667778888877775       35886       899999987653   3 56689999999999


Q ss_pred             cCChHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhh-hcCCHHH
Q 037816          437 HGNGFKALELYEEMKLEGVEPT-DV-TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG-RAGLLIE  513 (648)
Q Consensus       437 ~~~~~~A~~~~~~m~~~~~~p~-~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~  513 (648)
                      .|++++|..+|++..+.  .|+ .. .|..+...+.+.|++++|..+|+++.+.  .+++...|...+.... ..|++++
T Consensus       112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~  187 (308)
T 2ond_A          112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV  187 (308)
T ss_dssp             TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred             cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence            99999999999999984  464 33 7888999999999999999999999873  2345555554444422 3699999


Q ss_pred             HHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCC-CCccHHHHHHHHHhcCChHHHHHHHHHH
Q 037816          514 ARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLA---QPD-SPAPYILMANIYSCSGRWKERAKAIKRM  587 (648)
Q Consensus       514 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m  587 (648)
                      |.++|++. ...| +...|..++..+.+.|++++|..+|+++++.   .|. ...+|..++..+.+.|++++|..+++++
T Consensus       188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a  267 (308)
T 2ond_A          188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR  267 (308)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99999988 3333 5788999999999999999999999999986   343 5568889999999999999999999999


Q ss_pred             HhCC
Q 037816          588 KEMG  591 (648)
Q Consensus       588 ~~~~  591 (648)
                      .+..
T Consensus       268 ~~~~  271 (308)
T 2ond_A          268 FTAF  271 (308)
T ss_dssp             HHHT
T ss_pred             HHHc
Confidence            8754

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.27  E-value=1.7e-11  Score=119.54  Aligned_cols=239  Identities=11%  Similarity=0.037  Sum_probs=150.8

Q ss_pred             CchhHHHHHHHHHHhcCCHHHHHHHHHhccC--------C---CcccHHHHHHHHHHcCCHHHHHHHHHHHHHc------
Q 037816          290 SDLCIESALMDMYSKCGSVEDAWQIFEFAEE--------L---DGVSMTVILVGFAQNGFEEEAMQLFVKMVKA------  352 (648)
Q Consensus       290 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------  352 (648)
                      .+..++..+...+...|++++|..+|+++.+        .   ....+..+...|...|++++|...+++....      
T Consensus        25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  104 (311)
T 3nf1_A           25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG  104 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence            3466788999999999999999999988765        1   2345777888999999999999999998764      


Q ss_pred             CC-CcCHHHHHHHHHHHhccCChhHHHHHHHHHHHh------CCC-CchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCCh
Q 037816          353 GI-EIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS------DFT-SNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNS  424 (648)
Q Consensus       353 ~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~  424 (648)
                      +- +....++..+...+...|++++|...++.+.+.      +.. .....+                            
T Consensus       105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~----------------------------  156 (311)
T 3nf1_A          105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQL----------------------------  156 (311)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH----------------------------
T ss_pred             CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHH----------------------------
Confidence            22 234567888889999999999999999887753      111 122233                            


Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc------CC
Q 037816          425 VSWNSMIAAFARHGNGFKALELYEEMKLE------GVEP-TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH------RI  491 (648)
Q Consensus       425 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~------~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~------~~  491 (648)
                         ..+...+...|++++|+..++++.+.      +..| ...++..+...+...|++++|...++++.+..      ..
T Consensus       157 ---~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  233 (311)
T 3nf1_A          157 ---NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSV  233 (311)
T ss_dssp             ---HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             ---HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence               34444455555555555555554432      1122 23355566666677777777777777665420      11


Q ss_pred             CC-C------hhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 037816          492 SP-R------AEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD  559 (648)
Q Consensus       492 ~~-~------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  559 (648)
                      .+ .      ...+..+...+...+.+.+|...++.. ...| +..++..+..+|...|++++|...++++++..|.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          234 DDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             ----CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred             CcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence            11 1      112222333344445555566666665 2233 3567888899999999999999999999887664

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.26  E-value=3.3e-10  Score=104.93  Aligned_cols=205  Identities=9%  Similarity=0.025  Sum_probs=140.8

Q ss_pred             cCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHH
Q 037816          356 IDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSMIA  432 (648)
Q Consensus       356 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~  432 (648)
                      .|+..+......+...|++++|...|+...+...+++...+..+..++...|++++|...|++..   +.+...|..+..
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~   84 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA   84 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence            45667777777888888888888888888877644666666668888888888888888887764   234567777888


Q ss_pred             HHHHcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC---hhHHHHHH
Q 037816          433 AFARHGNGFKALELYEEMKLEGVEPTD-------VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR---AEHYACVV  502 (648)
Q Consensus       433 ~~~~~~~~~~A~~~~~~m~~~~~~p~~-------~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~  502 (648)
                      +|...|++++|+..+++..+.. +.+.       ..|..+...+...|++++|...|+++.+   ..|+   ...+..+.
T Consensus        85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~  160 (228)
T 4i17_A           85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLG  160 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHH
Confidence            8888888888888888887753 2234       3466666777778888888888888865   3443   56666777


Q ss_pred             HHhhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHH
Q 037816          503 DMVGRAGLLIEARSFIERM-P-VKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIY  571 (648)
Q Consensus       503 ~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  571 (648)
                      ..|...|+.     .++++ . ...+...+....  ....+.+++|+..++++++..|+++.+...+..+.
T Consensus       161 ~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~  224 (228)
T 4i17_A          161 VLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK  224 (228)
T ss_dssp             HHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence            777655543     22222 1 112333343332  33446678999999999999999887777666543

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.26  E-value=1.3e-10  Score=116.86  Aligned_cols=194  Identities=13%  Similarity=0.012  Sum_probs=112.8

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHhhcCC-----C-----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC-CH
Q 037816          395 VNNGLINMYSKCGDLEDSIKVFSRMAP-----R-----NSVSWNSMIAAFARHGNGFKALELYEEMKLE----GVEP-TD  459 (648)
Q Consensus       395 ~~~~li~~~~~~g~~~~A~~~~~~~~~-----~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~  459 (648)
                      ++..+...|...|+++.|...+.+..+     +     ...+++.+...|...|++++|+..+++..+.    +-.+ ..
T Consensus       143 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  222 (378)
T 3q15_A          143 FHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIA  222 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            444555555566666555555544321     1     1235556666667777777777777665542    1111 12


Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC----CC--CCC-HHH
Q 037816          460 VTFLSLLHACSHVGLVNKGMEFLKSMTEVH---RISPRAEHYACVVDMVGRAGLLIEARSFIERM----PV--KPD-VLV  529 (648)
Q Consensus       460 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~--~p~-~~~  529 (648)
                      .++..+..++...|++++|...+++..+..   +.+....++..+...|.+.|++++|.+.+++.    ..  .|. ...
T Consensus       223 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  302 (378)
T 3q15_A          223 ISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKEL  302 (378)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            355666667777777777777777765510   12223556667777777777777777777765    11  122 233


Q ss_pred             HHHHHHHHHHcCC---hHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037816          530 WQALLGACSIHGD---SEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKE  589 (648)
Q Consensus       530 ~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  589 (648)
                      +..+...+...++   +.+|+..+++. ...|.....+..++..|...|++++|.+.+++..+
T Consensus       303 ~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          303 FLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            4444444555666   66666666652 22233345666778888888888888888777654

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.25  E-value=4.5e-10  Score=99.85  Aligned_cols=167  Identities=11%  Similarity=-0.023  Sum_probs=144.2

Q ss_pred             hHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 037816          394 FVNNGLINMYSKCGDLEDSIKVFSRMAP---RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACS  470 (648)
Q Consensus       394 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~  470 (648)
                      ..+..+...+...|++++|...++++.+   .+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus         9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~   87 (186)
T 3as5_A            9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV   87 (186)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence            4566678888899999999999998874   367788889999999999999999999998864 446788888999999


Q ss_pred             ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChHHHHH
Q 037816          471 HVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PV-KPDVLVWQALLGACSIHGDSEMGKY  548 (648)
Q Consensus       471 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~  548 (648)
                      ..|++++|...++++.+.  .+.+...+..+...+...|++++|.+.++++ .. ..+...+..+...+...|++++|..
T Consensus        88 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  165 (186)
T 3as5_A           88 QVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP  165 (186)
T ss_dssp             HHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999999999874  3457888999999999999999999999987 33 3357889999999999999999999


Q ss_pred             HHHHHHhcCCCCCcc
Q 037816          549 AAEKLFLAQPDSPAP  563 (648)
Q Consensus       549 ~~~~~~~~~p~~~~~  563 (648)
                      .++++++..|++...
T Consensus       166 ~~~~~~~~~~~~~~~  180 (186)
T 3as5_A          166 HFKKANELDEGASVE  180 (186)
T ss_dssp             HHHHHHHHHHCCCGG
T ss_pred             HHHHHHHcCCCchhh
Confidence            999999988877543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.24  E-value=2.3e-10  Score=106.00  Aligned_cols=189  Identities=10%  Similarity=-0.008  Sum_probs=115.6

Q ss_pred             CchhHHHHHHHHHHhCCCHHHHHHHHhhcC---C-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 037816          391 SNPFVNNGLINMYSKCGDLEDSIKVFSRMA---P-RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP-TDVTFLSL  465 (648)
Q Consensus       391 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l  465 (648)
                      .++..+......+...|++++|...|++..   + ++...+..+..++...|++++|+..+++..+..  | +...+..+
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l   82 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN--YNLANAYIGK   82 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CSHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC--cchHHHHHHH
Confidence            345566666667777777777777776553   2 455555556667777777777777777776643  4 34456666


Q ss_pred             HHHHhccCcHHHHHHHHHHhHHhcCCCCCh-------hHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC---HHHHHHHH
Q 037816          466 LHACSHVGLVNKGMEFLKSMTEVHRISPRA-------EHYACVVDMVGRAGLLIEARSFIERM-PVKPD---VLVWQALL  534 (648)
Q Consensus       466 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~  534 (648)
                      ..++...|++++|...+++..+.  .+.+.       ..|..+...+...|++++|++.|++. ...|+   ...|..+.
T Consensus        83 ~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~  160 (228)
T 4i17_A           83 SAAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG  160 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence            66677777777777777777653  12233       34566666666677777777777665 44554   34455555


Q ss_pred             HHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816          535 GACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       535 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  590 (648)
                      .+|...     +...++++....+.++..|...  .....|.+++|+..+++..+.
T Consensus       161 ~~~~~~-----~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l  209 (228)
T 4i17_A          161 VLFYNN-----GADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTL  209 (228)
T ss_dssp             HHHHHH-----HHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-----HHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhc
Confidence            555432     3344555555555543333322  233445669999999999874

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.19  E-value=6.5e-09  Score=104.40  Aligned_cols=227  Identities=10%  Similarity=0.015  Sum_probs=166.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCC-CcC----HHHHHHHHHHHhccCChhHHHHHHHHHHHhC--C---C-CchhHHH
Q 037816          329 ILVGFAQNGFEEEAMQLFVKMVKAGI-EID----PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSD--F---T-SNPFVNN  397 (648)
Q Consensus       329 li~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~---~-~~~~~~~  397 (648)
                      ....+...|++++|+..|++..+... .++    ..++..+...+...|+++.|...+....+..  .   . ....+++
T Consensus       107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  186 (378)
T 3q15_A          107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF  186 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence            34456677888888888887765311 122    3456667777778888888888877766421  1   1 1245677


Q ss_pred             HHHHHHHhCCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHH-----cCCCCCHHHHH
Q 037816          398 GLINMYSKCGDLEDSIKVFSRMAP-----RN----SVSWNSMIAAFARHGNGFKALELYEEMKL-----EGVEPTDVTFL  463 (648)
Q Consensus       398 ~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~-----~~~~p~~~~~~  463 (648)
                      .+...|...|++++|...|.+..+     ++    ..++..+..+|...|++++|+..+++..+     .. +....++.
T Consensus       187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~  265 (378)
T 3q15_A          187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF  265 (378)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence            788888899999998888876642     12    34677888899999999999999999876     33 22366788


Q ss_pred             HHHHHHhccCcHHHHHHHHHHhHHhcCC---CCChhHHHHHHHHhhhcCC---HHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 037816          464 SLLHACSHVGLVNKGMEFLKSMTEVHRI---SPRAEHYACVVDMVGRAGL---LIEARSFIERMPVKPD-VLVWQALLGA  536 (648)
Q Consensus       464 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~l~~~  536 (648)
                      .+...+...|++++|...+++..+...-   +.....+..+...|...|+   +.+|+..+++.+..|+ ...+..+...
T Consensus       266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~  345 (378)
T 3q15_A          266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAV  345 (378)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence            8889999999999999999999875222   1223456677778888888   9999999998754444 3456678888


Q ss_pred             HHHcCChHHHHHHHHHHHhc
Q 037816          537 CSIHGDSEMGKYAAEKLFLA  556 (648)
Q Consensus       537 ~~~~g~~~~A~~~~~~~~~~  556 (648)
                      |...|++++|...++++++.
T Consensus       346 y~~~g~~~~A~~~~~~al~~  365 (378)
T 3q15_A          346 FESSCHFEQAAAFYRKVLKA  365 (378)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHH
Confidence            99999999999999998753

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.19  E-value=6.4e-10  Score=115.11  Aligned_cols=209  Identities=11%  Similarity=0.017  Sum_probs=158.7

Q ss_pred             HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCCh-hHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHh
Q 037816          339 EEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSL-GLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFS  417 (648)
Q Consensus       339 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  417 (648)
                      +++++..+++..... +.+...+..+..++...|++ ++|...++.+.+.. +.+...+..+..+|...|++++|...|+
T Consensus        84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~  161 (474)
T 4abn_A           84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS  161 (474)
T ss_dssp             HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            455666666554432 34667777777778888888 88888888877765 4557778888888888888888888888


Q ss_pred             hcC--CCChhHHHHHHHHHHHc---------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc--------CcHHHH
Q 037816          418 RMA--PRNSVSWNSMIAAFARH---------GNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHV--------GLVNKG  478 (648)
Q Consensus       418 ~~~--~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--------g~~~~A  478 (648)
                      +..  .|+...+..+...|...         |++++|+..+++..+.. +.+...+..+..++...        |++++|
T Consensus       162 ~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A  240 (474)
T 4abn_A          162 GALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQA  240 (474)
T ss_dssp             HHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence            765  35567777778888888         88899999999888854 33577788888888887        889999


Q ss_pred             HHHHHHhHHhcCCC---CChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHH
Q 037816          479 MEFLKSMTEVHRIS---PRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEK  552 (648)
Q Consensus       479 ~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~  552 (648)
                      ...|+++.+.  -+   .+...|..+..+|...|++++|.+.|++. ...| +...+..+..++...|++++|+..+.+
T Consensus       241 ~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~  317 (474)
T 4abn_A          241 LSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK  317 (474)
T ss_dssp             HHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999988874  22   37788888889999999999999998887 4444 466678888888888888888765543

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.10  E-value=9.8e-10  Score=105.15  Aligned_cols=222  Identities=11%  Similarity=0.103  Sum_probs=152.4

Q ss_pred             hccCChhHHHHHHHHHHHh-------CCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC-----------CChhHHHHH
Q 037816          369 GVDTSLGLGKQIHSLIIKS-------DFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP-----------RNSVSWNSM  430 (648)
Q Consensus       369 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~l  430 (648)
                      ...|+++.|..++++..+.       ..+....++..+...|...|++++|...+++..+           ....++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            4567788888877776642       2234566788889999999999999998887641           134578888


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc-----CCCC-ChhH
Q 037816          431 IAAFARHGNGFKALELYEEMKLE------GVEP-TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH-----RISP-RAEH  497 (648)
Q Consensus       431 ~~~~~~~~~~~~A~~~~~~m~~~------~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-----~~~~-~~~~  497 (648)
                      ...|...|++++|...+++..+.      .-.| ...++..+...+...|++++|...++++.+..     ...| ...+
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            88999999999999999988764      1113 34567788888999999999999999887631     1122 4667


Q ss_pred             HHHHHHHhhhcCCHHHHHHHHHhC-C---------CCCC-HHHHHHHHHHHHHcCC------hHHHHHHHHHHHhcCCCC
Q 037816          498 YACVVDMVGRAGLLIEARSFIERM-P---------VKPD-VLVWQALLGACSIHGD------SEMGKYAAEKLFLAQPDS  560 (648)
Q Consensus       498 ~~~l~~~~~~~g~~~~A~~~~~~~-~---------~~p~-~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~p~~  560 (648)
                      +..+...|...|++++|.+.++++ .         ..+. ...|..+...+...+.      +..+...++......|..
T Consensus       172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (283)
T 3edt_B          172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV  251 (283)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence            888889999999999999988876 1         1222 2233333333333222      333333333333334555


Q ss_pred             CccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816          561 PAPYILMANIYSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       561 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  590 (648)
                      ..++..++.+|...|++++|.+++++..+.
T Consensus       252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            678999999999999999999999998763

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.09  E-value=5.7e-08  Score=97.29  Aligned_cols=258  Identities=11%  Similarity=-0.059  Sum_probs=124.5

Q ss_pred             HHHHHCCCchHHHHHHHHHHhCCCCCChh----hHHHHHHHhhccCChHHHHHHHHHHHHhcCC-Cc----hhHHHHHHH
Q 037816          230 SGLVQNQLYEEGLKLFVKMHLGLINPNSL----TYLSSVMACSGLQALCEGRQIHGILWKLALQ-SD----LCIESALMD  300 (648)
Q Consensus       230 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~  300 (648)
                      ..+...|++++|...+++........+..    .+..+...+...|+++.|...++...+.... .+    ..++..+..
T Consensus        22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~  101 (373)
T 1hz4_A           22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE  101 (373)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            34455666666666666655432111111    2333344455556666666666555442110 11    122344555


Q ss_pred             HHHhcCCHHHHHHHHHhccC-------C----CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----cCHHHHHHHH
Q 037816          301 MYSKCGSVEDAWQIFEFAEE-------L----DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIE----IDPNMVSAVL  365 (648)
Q Consensus       301 ~~~~~~~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~----p~~~~~~~ll  365 (648)
                      .+...|++++|.+.+++...       +    ....+..+...+...|++++|...+++.......    ....++..+.
T Consensus       102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la  181 (373)
T 1hz4_A          102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI  181 (373)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence            56666666666666655432       0    0112334555566666666666666666543211    1123445555


Q ss_pred             HHHhccCChhHHHHHHHHHHHhCCCCc-hhHHH-----HHHHHHHhCCCHHHHHHHHhhcCCCC-------hhHHHHHHH
Q 037816          366 GVFGVDTSLGLGKQIHSLIIKSDFTSN-PFVNN-----GLINMYSKCGDLEDSIKVFSRMAPRN-------SVSWNSMIA  432 (648)
Q Consensus       366 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~-----~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~l~~  432 (648)
                      ..+...|++++|...++......-.++ ...+.     ..+..+...|++++|...+++...+.       ...+..+..
T Consensus       182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~  261 (373)
T 1hz4_A          182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR  261 (373)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence            556666666666666666554311111 01111     12233556666666666666654321       112344455


Q ss_pred             HHHHcCChHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 037816          433 AFARHGNGFKALELYEEMKLE----GVEPTD-VTFLSLLHACSHVGLVNKGMEFLKSMTE  487 (648)
Q Consensus       433 ~~~~~~~~~~A~~~~~~m~~~----~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~  487 (648)
                      .+...|++++|...+++....    |..++. ..+..+..++...|+.++|...+++...
T Consensus       262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~  321 (373)
T 1hz4_A          262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  321 (373)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            555666666666666555431    111111 1333334445555555555555555443

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.08  E-value=8.1e-09  Score=97.69  Aligned_cols=205  Identities=12%  Similarity=0.071  Sum_probs=128.7

Q ss_pred             chhHHHHHHHHHHhCCCHHHHHHHHhhcCC--C-C---hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC-HHHHH
Q 037816          392 NPFVNNGLINMYSKCGDLEDSIKVFSRMAP--R-N---SVSWNSMIAAFARHGNGFKALELYEEMKLEGV-EPT-DVTFL  463 (648)
Q Consensus       392 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~-~~~~~  463 (648)
                      +...+-.+...+.+.|++++|...|+.+..  | +   ...+..+..+|.+.|++++|+..|++..+... .|. ...+.
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~   93 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY   93 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence            445555566666677777777777766642  2 2   34556666666777777777777777666421 111 33455


Q ss_pred             HHHHHHhc--------cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037816          464 SLLHACSH--------VGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLG  535 (648)
Q Consensus       464 ~ll~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~  535 (648)
                      .+..++..        .|++++|...|+++.+.  .+.+......+.......+..               ...+..+..
T Consensus        94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la~  156 (261)
T 3qky_A           94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRELRAKL---------------ARKQYEAAR  156 (261)
T ss_dssp             HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHH---------------HHHHHHHHH
T ss_pred             HHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHHHHHH---------------HHHHHHHHH
Confidence            55555655        66777777777776653  111222222221111100000               112456778


Q ss_pred             HHHHcCChHHHHHHHHHHHhcCCCCC---ccHHHHHHHHHhc----------CChHHHHHHHHHHHhCCCCCCCceeEEE
Q 037816          536 ACSIHGDSEMGKYAAEKLFLAQPDSP---APYILMANIYSCS----------GRWKERAKAIKRMKEMGVDKETGISWIE  602 (648)
Q Consensus       536 ~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~~~~~~~~~~  602 (648)
                      .|...|++++|+..++++++..|+++   .++..++.+|...          |++++|+..++++.+..  |        
T Consensus       157 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~--p--------  226 (261)
T 3qky_A          157 LYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF--P--------  226 (261)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC--T--------
T ss_pred             HHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC--C--------
Confidence            89999999999999999999999854   4788999999877          99999999999998743  2        


Q ss_pred             EcCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHh
Q 037816          603 IEKQVHSFVVDDKMHPQADTIHGVLAELLRLMID  636 (648)
Q Consensus       603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~  636 (648)
                                   .+|...+....+.++..++.+
T Consensus       227 -------------~~~~~~~a~~~l~~~~~~~~~  247 (261)
T 3qky_A          227 -------------DSPLLRTAEELYTRARQRLTE  247 (261)
T ss_dssp             -------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred             -------------CChHHHHHHHHHHHHHHHHHH
Confidence                         234556666666666666554

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.07  E-value=1.4e-09  Score=117.20  Aligned_cols=165  Identities=15%  Similarity=0.177  Sum_probs=138.9

Q ss_pred             CCchhHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 037816          390 TSNPFVNNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP-TDVTFLSL  465 (648)
Q Consensus       390 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l  465 (648)
                      |.+...++.|...|.+.|++++|++.|++..   +.+..+|..+..+|.+.|++++|+..|++..+..  | +...|..+
T Consensus         6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~~~a~~nL   83 (723)
T 4gyw_A            6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNM   83 (723)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence            3456778888888899999999999888765   3467788889999999999999999999998854  5 57788999


Q ss_pred             HHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCh
Q 037816          466 LHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPD-VLVWQALLGACSIHGDS  543 (648)
Q Consensus       466 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~  543 (648)
                      ..++...|++++|++.|+++.+.  -+-+...|..+..+|.+.|++++|++.|++. .+.|+ ...+..+..++...|++
T Consensus        84 g~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~  161 (723)
T 4gyw_A           84 GNTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW  161 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence            99999999999999999999874  2336788999999999999999999999988 55664 77888999999999999


Q ss_pred             HHHHHHHHHHHhcCC
Q 037816          544 EMGKYAAEKLFLAQP  558 (648)
Q Consensus       544 ~~A~~~~~~~~~~~p  558 (648)
                      ++|.+.++++++..|
T Consensus       162 ~~A~~~~~kal~l~~  176 (723)
T 4gyw_A          162 TDYDERMKKLVSIVA  176 (723)
T ss_dssp             TTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCh
Confidence            999999999876543

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.06  E-value=1.9e-08  Score=94.94  Aligned_cols=138  Identities=10%  Similarity=0.023  Sum_probs=59.9

Q ss_pred             HHHHhcCCHHHHHHHHHhccCCCccc-HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHH
Q 037816          300 DMYSKCGSVEDAWQIFEFAEELDGVS-MTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGK  378 (648)
Q Consensus       300 ~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~  378 (648)
                      +-..-.|++..++.-...+...+... -.-+.++|...|++...         ..-.|....+..+...+ ..+    +.
T Consensus        21 kn~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~   86 (310)
T 3mv2_B           21 KQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NI   86 (310)
T ss_dssp             HHHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CC
T ss_pred             HHHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HH
Confidence            34455677776666544443322221 12233556666655431         01123322333222222 111    33


Q ss_pred             HHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC-----CChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037816          379 QIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP-----RNSVSWNSMIAAFARHGNGFKALELYEEMKL  452 (648)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~  452 (648)
                      ..+++....+ +++...+..+..++...|++++|++++.+...     .+...+..++..+.+.|+.+.|.+.+++|.+
T Consensus        87 ~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~  164 (310)
T 3mv2_B           87 EELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN  164 (310)
T ss_dssp             HHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            4444444333 23333333444555555555555555554421     1233444445555555555555555555544

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.04  E-value=4.3e-09  Score=87.71  Aligned_cols=126  Identities=18%  Similarity=0.223  Sum_probs=77.4

Q ss_pred             HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHc
Q 037816          463 LSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PV-KPDVLVWQALLGACSIH  540 (648)
Q Consensus       463 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~  540 (648)
                      ..+...+...|++++|..+++++.+.  .+.+...+..+...+...|++++|...++++ .. +.+...+..+...+...
T Consensus         5 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~   82 (136)
T 2fo7_A            5 YNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ   82 (136)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence            33444445555555555555555442  1223444555555555555555555555554 11 22355566666777777


Q ss_pred             CChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816          541 GDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       541 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  590 (648)
                      |++++|...++++.+..|.++.++..++.++...|++++|.+.++++.+.
T Consensus        83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            77777777777777777777777777777777778888887777777653

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.03  E-value=3.8e-09  Score=101.76  Aligned_cols=216  Identities=11%  Similarity=0.006  Sum_probs=118.5

Q ss_pred             CHHHHHHHHHhccCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCcC-HHHHHHHHHHHhccCChhHHHHHH
Q 037816          307 SVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKA----GIEID-PNMVSAVLGVFGVDTSLGLGKQIH  381 (648)
Q Consensus       307 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~  381 (648)
                      ++++|...|+..           ...|...|++++|...|++..+.    |-+++ ..+|..+..++...|++++|...+
T Consensus        32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~  100 (292)
T 1qqe_A           32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL  100 (292)
T ss_dssp             HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            477777776553           56677778888888777776542    21111 234455555555555555555555


Q ss_pred             HHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHc-CChHHHHHHHHHHHHcCCC-CC-
Q 037816          382 SLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARH-GNGFKALELYEEMKLEGVE-PT-  458 (648)
Q Consensus       382 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~m~~~~~~-p~-  458 (648)
                      +...+.               +...|+...+           ..+++.+...|... |++++|+..|++..+.... .+ 
T Consensus       101 ~~Al~l---------------~~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~  154 (292)
T 1qqe_A          101 ENAIQI---------------FTHRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV  154 (292)
T ss_dssp             HHHHHH---------------HHHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHH---------------HHHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence            444321               1111221111           23455566666664 7777777777776652100 01 


Q ss_pred             ---HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-Ch-----hHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHH
Q 037816          459 ---DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP-RA-----EHYACVVDMVGRAGLLIEARSFIERM-PVKPDVL  528 (648)
Q Consensus       459 ---~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~  528 (648)
                         ..++..+...+...|++++|+..|+++.+. .... ..     ..+..+..++...|++++|...|++. .+.|+..
T Consensus       155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  233 (292)
T 1qqe_A          155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKS-SMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA  233 (292)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-HhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence               235666677777777777777777777663 2111 11     14566666777777777777777776 4444321


Q ss_pred             ------HHHHHHHHHH--HcCChHHHHHHHHHHHhcCCCC
Q 037816          529 ------VWQALLGACS--IHGDSEMGKYAAEKLFLAQPDS  560 (648)
Q Consensus       529 ------~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~p~~  560 (648)
                            .+..++.++.  ..+++++|+..|+++..++|..
T Consensus       234 ~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~  273 (292)
T 1qqe_A          234 DSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK  273 (292)
T ss_dssp             ----HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred             CcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence                  2333444443  3456777777776666666644

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.03  E-value=4.6e-09  Score=99.42  Aligned_cols=203  Identities=12%  Similarity=0.027  Sum_probs=146.0

Q ss_pred             CcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhCCCHHHHHHHHhhcCC--C----Chh
Q 037816          355 EIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSN---PFVNNGLINMYSKCGDLEDSIKVFSRMAP--R----NSV  425 (648)
Q Consensus       355 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~----~~~  425 (648)
                      +.+...+......+...|++++|...|+.+.+.. +.+   ...+..+..+|.+.|++++|...|+...+  |    ...
T Consensus        12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~   90 (261)
T 3qky_A           12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ   90 (261)
T ss_dssp             CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence            4456777788888999999999999999998865 333   67788899999999999999999998752  2    234


Q ss_pred             HHHHHHHHHHH--------cCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChh
Q 037816          426 SWNSMIAAFAR--------HGNGFKALELYEEMKLEGVEPTD-VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAE  496 (648)
Q Consensus       426 ~~~~l~~~~~~--------~~~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  496 (648)
                      .+..+..++..        .|++++|+..|++..+..  |+. .....+              ..+......     ...
T Consensus        91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~--------------~~~~~~~~~-----~~~  149 (261)
T 3qky_A           91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDAT--------------QKIRELRAK-----LAR  149 (261)
T ss_dssp             HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHH--------------HHHHHHHHH-----HHH
T ss_pred             HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHH--------------HHHHHHHHH-----HHH
Confidence            67777888888        999999999999999854  542 222111              111111110     112


Q ss_pred             HHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHc----------CChHHHHHHHHHHHhcCCCCC
Q 037816          497 HYACVVDMVGRAGLLIEARSFIERM-PVKPD----VLVWQALLGACSIH----------GDSEMGKYAAEKLFLAQPDSP  561 (648)
Q Consensus       497 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~~~  561 (648)
                      .+..+...|.+.|++++|+..|+++ ...|+    ...+..+..+|...          |++++|+..++++++..|+++
T Consensus       150 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  229 (261)
T 3qky_A          150 KQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP  229 (261)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence            2556778888899999999988887 33333    45677777778766          889999999999999999986


Q ss_pred             c---cHHHHHHHHHhcCChHH
Q 037816          562 A---PYILMANIYSCSGRWKE  579 (648)
Q Consensus       562 ~---~~~~l~~~~~~~g~~~~  579 (648)
                      .   +...+..++...|++++
T Consensus       230 ~~~~a~~~l~~~~~~~~~~~~  250 (261)
T 3qky_A          230 LLRTAEELYTRARQRLTELEG  250 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHhhh
Confidence            4   34445555544444443

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.00  E-value=2.6e-09  Score=102.92  Aligned_cols=201  Identities=11%  Similarity=0.034  Sum_probs=145.0

Q ss_pred             ChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC-------C--ChhHHHHHHHHHHHcCChHHH
Q 037816          373 SLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP-------R--NSVSWNSMIAAFARHGNGFKA  443 (648)
Q Consensus       373 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~l~~~~~~~~~~~~A  443 (648)
                      ++++|...+...               ...|...|++++|...|.+...       +  ...+|+.+..+|...|++++|
T Consensus        32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A   96 (292)
T 1qqe_A           32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA   96 (292)
T ss_dssp             HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence            477777776665               3457778888888888876542       1  145788889999999999999


Q ss_pred             HHHHHHHHHcCC---CCC--HHHHHHHHHHHhcc-CcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHhhhcCCHHH
Q 037816          444 LELYEEMKLEGV---EPT--DVTFLSLLHACSHV-GLVNKGMEFLKSMTEVHRISPR----AEHYACVVDMVGRAGLLIE  513 (648)
Q Consensus       444 ~~~~~~m~~~~~---~p~--~~~~~~ll~~~~~~-g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~  513 (648)
                      +..+++..+...   .+.  ..++..+...|... |++++|+..|++..+...-..+    ..++..+...|.+.|++++
T Consensus        97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~  176 (292)
T 1qqe_A           97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE  176 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence            999998875311   111  34778888889986 9999999999999874111111    4578889999999999999


Q ss_pred             HHHHHHhC-CCCCC---H-----HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcc-----HHHHHHHHH--hcCCh
Q 037816          514 ARSFIERM-PVKPD---V-----LVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP-----YILMANIYS--CSGRW  577 (648)
Q Consensus       514 A~~~~~~~-~~~p~---~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~  577 (648)
                      |+..|++. ...|+   .     ..|..+..++...|++++|+..++++++..|.....     +..++.++.  ..+++
T Consensus       177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~  256 (292)
T 1qqe_A          177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL  256 (292)
T ss_dssp             HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred             HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence            99999987 33332   1     256778888999999999999999999999876543     345566664  45778


Q ss_pred             HHHHHHHHHHH
Q 037816          578 KERAKAIKRMK  588 (648)
Q Consensus       578 ~~A~~~~~~m~  588 (648)
                      ++|+..|+++.
T Consensus       257 ~~A~~~~~~~~  267 (292)
T 1qqe_A          257 SEHCKEFDNFM  267 (292)
T ss_dssp             HHHHHHHTTSS
T ss_pred             HHHHHHhccCC
Confidence            88888876653

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.00  E-value=1.6e-08  Score=93.20  Aligned_cols=180  Identities=11%  Similarity=-0.003  Sum_probs=110.9

Q ss_pred             hHHHHHHHHHHhCCCHHHHHHHHhhcCC--CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH----HHHH
Q 037816          394 FVNNGLINMYSKCGDLEDSIKVFSRMAP--RN----SVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD----VTFL  463 (648)
Q Consensus       394 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~  463 (648)
                      ..+-.+...+.+.|++++|...|+++.+  |+    ...+..+..+|.+.|++++|+..|+++.+..  |+.    ..+.
T Consensus         5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~~   82 (225)
T 2yhc_A            5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVMY   82 (225)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHHH
Confidence            3444455666777777777777776642  21    2355566667777777777777777777643  321    1333


Q ss_pred             HHHHHHhc------------------cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCC
Q 037816          464 SLLHACSH------------------VGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKP  525 (648)
Q Consensus       464 ~ll~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p  525 (648)
                      .+..++..                  .|++++|...|+++.+.  .+-+............    ..      ...    
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~----~~------~~~----  146 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVF----LK------DRL----  146 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHH----HH------HHH----
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHH----HH------HHH----
Confidence            33333332                  34555555555555542  1112222211111000    00      000    


Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC---ccHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037816          526 DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSP---APYILMANIYSCSGRWKERAKAIKRMKEMGV  592 (648)
Q Consensus       526 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~  592 (648)
                       ......+...|.+.|++++|+..++++++..|+++   .++..++.+|.+.|++++|++.++.+...+.
T Consensus       147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~  215 (225)
T 2yhc_A          147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS  215 (225)
T ss_dssp             -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred             -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence             00113456678899999999999999999999876   5789999999999999999999999988654

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.99  E-value=8.8e-09  Score=98.41  Aligned_cols=198  Identities=11%  Similarity=0.047  Sum_probs=117.4

Q ss_pred             HHHHHHHHHHhccCChhHHHHHHHHHHHh------CC-CCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC-------C--
Q 037816          359 NMVSAVLGVFGVDTSLGLGKQIHSLIIKS------DF-TSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP-------R--  422 (648)
Q Consensus       359 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~--  422 (648)
                      .++..+...+...|++++|...++.+.+.      +- +....++..+...|...|++++|...|.+...       +  
T Consensus        44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  123 (283)
T 3edt_B           44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH  123 (283)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence            34444455555555555555555544432      11 22234555666666666666666666655431       1  


Q ss_pred             --ChhHHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc----
Q 037816          423 --NSVSWNSMIAAFARHGNGFKALELYEEMKLE------GVEP-TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH----  489 (648)
Q Consensus       423 --~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~------~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~----  489 (648)
                        ...++..+...|...|++++|...+++..+.      +-.| ...++..+...+...|++++|...++++.+..    
T Consensus       124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~  203 (283)
T 3edt_B          124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE  203 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence              2346677777888888888888888887764      1123 34567778888899999999999998887631    


Q ss_pred             --CCCC-ChhHHHHHHHHhhhcC------CHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 037816          490 --RISP-RAEHYACVVDMVGRAG------LLIEARSFIERMP-VKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLA  556 (648)
Q Consensus       490 --~~~~-~~~~~~~l~~~~~~~g------~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  556 (648)
                        ...+ ....+..+...+...+      .+.++...++... ..| ...++..+...|...|++++|...++++++.
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          204 FGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             SSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             CCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence              1122 3334444444333322      3455555555552 223 2556888889999999999999999998764

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.99  E-value=2.4e-08  Score=94.22  Aligned_cols=240  Identities=11%  Similarity=-0.010  Sum_probs=160.9

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCH
Q 037816          330 LVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDL  409 (648)
Q Consensus       330 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  409 (648)
                      ++-..-.|++..++.-..++   ...........+.+++...|+++..         ..-.|....+..+.. |...+  
T Consensus        20 ikn~fy~G~yq~~i~e~~~~---~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~--   84 (310)
T 3mv2_B           20 IKQNYYTGNFVQCLQEIEKF---SKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK--   84 (310)
T ss_dssp             HHHHHTTTCHHHHTHHHHTS---SCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT--
T ss_pred             HHHHHHhhHHHHHHHHHHhc---CccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc--
Confidence            34456678888887743332   1122233344455677666666531         112233334443333 33333  


Q ss_pred             HHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHh
Q 037816          410 EDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEP-TDVTFLSLLHACSHVGLVNKGMEFLKSM  485 (648)
Q Consensus       410 ~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~  485 (648)
                        |+..|++..   .++..++..+..++...|++++|++++.+....|..+ +...+..++..+.+.|+.+.|.+.+++|
T Consensus        85 --a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~  162 (310)
T 3mv2_B           85 --NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY  162 (310)
T ss_dssp             --CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             --HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence              667777655   2455556677888888999999999999887765322 4566777888899999999999999999


Q ss_pred             HHhcCCCC-----ChhHHHHHHHH--hhhcC--CHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 037816          486 TEVHRISP-----RAEHYACVVDM--VGRAG--LLIEARSFIERM-PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFL  555 (648)
Q Consensus       486 ~~~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  555 (648)
                      .+.   .|     +..+...|+.+  ....|  +..+|..+|+++ ...|+..+-..++.++...|++++|...++.+.+
T Consensus       163 ~~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~  239 (310)
T 3mv2_B          163 TNA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS  239 (310)
T ss_dssp             HHH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred             Hhc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            764   55     35555556655  33334  899999999998 4456644444555588888999999999988776


Q ss_pred             c----------CCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037816          556 A----------QPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMG  591 (648)
Q Consensus       556 ~----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  591 (648)
                      .          +|.++.++..++.+....|+  +|.++++++.+..
T Consensus       240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~  283 (310)
T 3mv2_B          240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD  283 (310)
T ss_dssp             HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred             hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence            5          48888888888888888887  8889999888754

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.98  E-value=1.8e-08  Score=83.90  Aligned_cols=131  Identities=18%  Similarity=0.230  Sum_probs=107.5

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHh
Q 037816          426 SWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMV  505 (648)
Q Consensus       426 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~  505 (648)
                      .|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|...++++.+.  .+.+...+..+...+
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~   79 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY   79 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence            46677788888899999999999888764 346777888888888899999999999998874  344677788888999


Q ss_pred             hhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 037816          506 GRAGLLIEARSFIERM-PVK-PDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD  559 (648)
Q Consensus       506 ~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  559 (648)
                      ...|++++|.+.++++ ... .+...+..+...+...|++++|...++++++..|.
T Consensus        80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A           80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence            9999999999999887 323 35777888888999999999999999999988875

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.96  E-value=4.9e-10  Score=95.85  Aligned_cols=139  Identities=9%  Similarity=0.025  Sum_probs=95.9

Q ss_pred             HHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHH
Q 037816          434 FARHGNGFKALELYEEMKLEGVEPT-DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLI  512 (648)
Q Consensus       434 ~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  512 (648)
                      +...|++++|+..+++....  .|+ ...+..+...|.+.|++++|.+.|++..+.  -+-+...|..+..+|.+.|+++
T Consensus         7 ~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~   82 (150)
T 4ga2_A            7 RRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTD   82 (150)
T ss_dssp             CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchH
Confidence            34456666776666665542  232 234455666777777777777777777663  2236677777777777777777


Q ss_pred             HHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHH-HHHHHHhcCCCCCccHHHHHHHHHhcCC
Q 037816          513 EARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKY-AAEKLFLAQPDSPAPYILMANIYSCSGR  576 (648)
Q Consensus       513 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~  576 (648)
                      +|+..|++. .+.| +...|..+...|.+.|++++|.. +++++++++|.++.+|.....++...|+
T Consensus        83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            777777776 4455 46677788888888888766554 4588888888888888888888877774

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.96  E-value=1.4e-08  Score=97.41  Aligned_cols=177  Identities=11%  Similarity=-0.021  Sum_probs=141.5

Q ss_pred             HHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 037816          409 LEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEV  488 (648)
Q Consensus       409 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~  488 (648)
                      .+.....+....+.+...+..+...+...|++++|...|++..+.. +-+...+..+...+...|++++|...++++...
T Consensus       102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~  180 (287)
T 3qou_A          102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ  180 (287)
T ss_dssp             HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred             HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence            3444555555555566677778888899999999999999998864 336678888889999999999999999998663


Q ss_pred             cCCCCChhHHHH-HHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--Ccc
Q 037816          489 HRISPRAEHYAC-VVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS--PAP  563 (648)
Q Consensus       489 ~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~  563 (648)
                         .|+...... ....+...|+.++|.+.+++. ...| +...+..+...+...|++++|+..++++++.+|.+  ..+
T Consensus       181 ---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a  257 (287)
T 3qou_A          181 ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT  257 (287)
T ss_dssp             ---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred             ---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence               454443332 233466778888888888877 4445 57888999999999999999999999999999988  789


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHh
Q 037816          564 YILMANIYSCSGRWKERAKAIKRMKE  589 (648)
Q Consensus       564 ~~~l~~~~~~~g~~~~A~~~~~~m~~  589 (648)
                      +..++.++...|+.++|...+++...
T Consensus       258 ~~~l~~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          258 RXTFQEILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            99999999999999999999887653

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.93  E-value=2.4e-09  Score=91.50  Aligned_cols=122  Identities=12%  Similarity=0.032  Sum_probs=104.0

Q ss_pred             HHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC
Q 037816          465 LLHACSHVGLVNKGMEFLKSMTEVHRISP-RAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHG  541 (648)
Q Consensus       465 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g  541 (648)
                      |...+...|++++|+..++....   ..| +...+..+...|.+.|++++|++.|++. .+.| +...|..+..+|...|
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~   79 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE   79 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            44556778899999999998864   344 5667778999999999999999999998 5555 5888999999999999


Q ss_pred             ChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHH-HHHHHh
Q 037816          542 DSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKA-IKRMKE  589 (648)
Q Consensus       542 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~  589 (648)
                      ++++|+..|+++++.+|.++.++..++.+|.+.|++++|.+. +++..+
T Consensus        80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~  128 (150)
T 4ga2_A           80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK  128 (150)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999887765 588766

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.93  E-value=7.7e-09  Score=112.05  Aligned_cols=169  Identities=9%  Similarity=-0.037  Sum_probs=91.0

Q ss_pred             HhCCCHHHHHHHHhhcC-----------CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 037816          404 SKCGDLEDSIKVFSRMA-----------PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHV  472 (648)
Q Consensus       404 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~  472 (648)
                      ...|++++|++.+++..           +.+...+..+..++...|++++|+..|++..+.+ +-+...+..+..++...
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~  480 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT  480 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence            44555555555555443           2234455555555566666666666666655532 22444555555555666


Q ss_pred             CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHH
Q 037816          473 GLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAA  550 (648)
Q Consensus       473 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~  550 (648)
                      |++++|...|+++.+.  .+.+...+..+..+|.+.|++++ ++.|++. ...| +...|..+..++.+.|++++|++.+
T Consensus       481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~  557 (681)
T 2pzi_A          481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL  557 (681)
T ss_dssp             TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            6666666666665542  12245555556666666666666 5555555 2233 3445555555666666666666666


Q ss_pred             HHHHhcCCCCCccHHHHHHHHHhcCC
Q 037816          551 EKLFLAQPDSPAPYILMANIYSCSGR  576 (648)
Q Consensus       551 ~~~~~~~p~~~~~~~~l~~~~~~~g~  576 (648)
                      +++++.+|.+..++..++.++...|+
T Consensus       558 ~~al~l~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          558 DEVPPTSRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred             HhhcccCcccHHHHHHHHHHHHccCC
Confidence            66666666655566666655554443

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.93  E-value=8.5e-08  Score=87.24  Aligned_cols=172  Identities=8%  Similarity=-0.059  Sum_probs=138.6

Q ss_pred             HHHHHhhcC-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC----cHHHHHHHHHHhH
Q 037816          412 SIKVFSRMA-PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVG----LVNKGMEFLKSMT  486 (648)
Q Consensus       412 A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g----~~~~A~~~~~~~~  486 (648)
                      |.+.|++.. ..++..+..|...|...+++++|+..|++..+.|   +...+..+...|.. +    ++++|..+|++..
T Consensus         5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~   80 (212)
T 3rjv_A            5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV   80 (212)
T ss_dssp             TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence            334444333 3466777778888888899999999999988865   56677777777777 6    8999999999997


Q ss_pred             HhcCCCCChhHHHHHHHHhhh----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHH----cCChHHHHHHHHHHH
Q 037816          487 EVHRISPRAEHYACVVDMVGR----AGLLIEARSFIERM-PVKPD---VLVWQALLGACSI----HGDSEMGKYAAEKLF  554 (648)
Q Consensus       487 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~~~  554 (648)
                      +.    -++..+..|...|..    .+++++|.+.|++. ...|.   +..+..|...|..    .+++++|+..++++.
T Consensus        81 ~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~  156 (212)
T 3rjv_A           81 EA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS  156 (212)
T ss_dssp             HT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred             HC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence            63    367778888888887    88999999999988 44453   7888889999988    889999999999999


Q ss_pred             hcCCCCCccHHHHHHHHHhc-C-----ChHHHHHHHHHHHhCCC
Q 037816          555 LAQPDSPAPYILMANIYSCS-G-----RWKERAKAIKRMKEMGV  592 (648)
Q Consensus       555 ~~~p~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~~~  592 (648)
                      +. |.++.++..++.+|... |     ++++|.+++++..+.|.
T Consensus       157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            88 66778999999999864 3     89999999999988774

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.88  E-value=2.2e-08  Score=106.51  Aligned_cols=160  Identities=9%  Similarity=0.008  Sum_probs=126.6

Q ss_pred             CCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 037816          406 CGDLEDSIKVFSRMAP---RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFL  482 (648)
Q Consensus       406 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~  482 (648)
                      .|++++|.+.|++..+   .+...|..+...+...|++++|.+.+++..+.. +.+...+..+..++...|++++|.+.+
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~   80 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL   80 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            4788999999998763   357789999999999999999999999999854 336788889999999999999999999


Q ss_pred             HHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc---CChHHHHHHHHHHHhcC
Q 037816          483 KSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIH---GDSEMGKYAAEKLFLAQ  557 (648)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~  557 (648)
                      ++..+.  .+.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+..++...   |+.++|.+.++++++.+
T Consensus        81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~  158 (568)
T 2vsy_A           81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG  158 (568)
T ss_dssp             HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred             HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence            999884  3346889999999999999999999999988 4444 577888899999999   99999999999999999


Q ss_pred             CCCCccHHHHH
Q 037816          558 PDSPAPYILMA  568 (648)
Q Consensus       558 p~~~~~~~~l~  568 (648)
                      |.+...|..++
T Consensus       159 p~~~~~~~~l~  169 (568)
T 2vsy_A          159 VGAVEPFAFLS  169 (568)
T ss_dssp             CCCSCHHHHTT
T ss_pred             CcccChHHHhC
Confidence            99988888776

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.87  E-value=4.4e-08  Score=88.88  Aligned_cols=128  Identities=9%  Similarity=0.032  Sum_probs=99.3

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhc
Q 037816          429 SMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA  508 (648)
Q Consensus       429 ~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  508 (648)
                      .+..+|.+.|++++|+..|++..+.. +-+...+..+..++...|++++|...|+++.+.  -+.+...+..+...|...
T Consensus        59 ~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~  135 (208)
T 3urz_A           59 ELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLT  135 (208)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence            38888999999999999999999864 336788888999999999999999999999874  233778888888888766


Q ss_pred             CC--HHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 037816          509 GL--LIEARSFIERMPVKPDV--LVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS  560 (648)
Q Consensus       509 g~--~~~A~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~  560 (648)
                      |.  .+.+...++.. ..|++  ..+.....++...|++++|+..|+++++..|++
T Consensus       136 ~~~~~~~~~~~~~~~-~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  190 (208)
T 3urz_A          136 AEQEKKKLETDYKKL-SSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST  190 (208)
T ss_dssp             HHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred             hHHHHHHHHHHHHHH-hCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence            54  45566677766 24443  344455666778899999999999999999974

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.86  E-value=1.7e-08  Score=88.94  Aligned_cols=156  Identities=11%  Similarity=0.046  Sum_probs=96.6

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH-hhhc
Q 037816          430 MIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDM-VGRA  508 (648)
Q Consensus       430 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~  508 (648)
                      +...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+.   .|+...+..+... +...
T Consensus        12 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~   87 (176)
T 2r5s_A           12 QVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELHQQ   87 (176)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHHhh
Confidence            3444555555555555555554432 123445555555555666666666666655432   2222222221111 1111


Q ss_pred             CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--CccHHHHHHHHHhcCChHHHHHHH
Q 037816          509 GLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS--PAPYILMANIYSCSGRWKERAKAI  584 (648)
Q Consensus       509 g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~  584 (648)
                      +...+|.+.+++. ...| +...+..+..++...|++++|+..++++++.+|..  +.++..++.++...|+.++|...|
T Consensus        88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y  167 (176)
T 2r5s_A           88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY  167 (176)
T ss_dssp             HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred             cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence            2223355666655 3345 47778888888999999999999999999998865  558889999999999999999998


Q ss_pred             HHHHh
Q 037816          585 KRMKE  589 (648)
Q Consensus       585 ~~m~~  589 (648)
                      ++...
T Consensus       168 ~~al~  172 (176)
T 2r5s_A          168 RRQLY  172 (176)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87654

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.84  E-value=1.7e-08  Score=85.79  Aligned_cols=102  Identities=10%  Similarity=-0.034  Sum_probs=90.3

Q ss_pred             CCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHH
Q 037816          490 RISP-RAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYIL  566 (648)
Q Consensus       490 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~  566 (648)
                      .+.| +...+..+...+.+.|++++|++.|++. ...| +...|..+..+|...|++++|+..|+++++.+|+++.+|..
T Consensus        30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~  109 (151)
T 3gyz_A           30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH  109 (151)
T ss_dssp             CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence            3455 5667788888899999999999999988 4455 58889999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhCC
Q 037816          567 MANIYSCSGRWKERAKAIKRMKEMG  591 (648)
Q Consensus       567 l~~~~~~~g~~~~A~~~~~~m~~~~  591 (648)
                      ++.+|...|++++|+..|++..+..
T Consensus       110 lg~~~~~lg~~~eA~~~~~~al~l~  134 (151)
T 3gyz_A          110 TGQCQLRLKAPLKAKECFELVIQHS  134 (151)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            9999999999999999999998854

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.83  E-value=8.8e-08  Score=92.91  Aligned_cols=218  Identities=11%  Similarity=0.026  Sum_probs=145.3

Q ss_pred             cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhc-cCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHH
Q 037816          336 NGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGV-DTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIK  414 (648)
Q Consensus       336 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  414 (648)
                      .|++++|.+++++..+... ..          +.+ .++++.|...|..+               ...|...|++++|..
T Consensus         4 ~~~~~eA~~~~~~a~k~~~-~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~   57 (307)
T 2ifu_A            4 AQKISEAHEHIAKAEKYLK-TS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD   57 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHC-CC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHcc-cc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence            3556666666666554311 10          111 35566666655543               345666777777777


Q ss_pred             HHhhcCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC---CCC--HHHHHHHHHHHhccCcHHHHHH
Q 037816          415 VFSRMAP-----RN----SVSWNSMIAAFARHGNGFKALELYEEMKLEGV---EPT--DVTFLSLLHACSHVGLVNKGME  480 (648)
Q Consensus       415 ~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~---~p~--~~~~~~ll~~~~~~g~~~~A~~  480 (648)
                      .|.+...     .+    ..+|+.+...|...|++++|+..+++..+.-.   .|.  ..++..+...|.. |++++|+.
T Consensus        58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~  136 (307)
T 2ifu_A           58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH  136 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence            6665431     11    34677788888888999999999888765311   121  3467778888888 99999999


Q ss_pred             HHHHhHHhcCCCC----ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHHcCChHHHHH
Q 037816          481 FLKSMTEVHRISP----RAEHYACVVDMVGRAGLLIEARSFIERM-PV---KPD----VLVWQALLGACSIHGDSEMGKY  548 (648)
Q Consensus       481 ~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~~g~~~~A~~  548 (648)
                      .|++..+...-..    ...++..+...|.+.|++++|++.|++. .+   .++    ...+..++.++...|++++|+.
T Consensus       137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~  216 (307)
T 2ifu_A          137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK  216 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            9999876421111    2467888999999999999999999887 11   122    2356666777888899999999


Q ss_pred             HHHHHHhcCCCCCcc-----HHHHHHHHHhcCChHHHHH
Q 037816          549 AAEKLFLAQPDSPAP-----YILMANIYSCSGRWKERAK  582 (648)
Q Consensus       549 ~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~  582 (648)
                      .+++++ ..|.....     ...++.++ ..|+.+.+.+
T Consensus       217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence            999999 88875543     34455555 5677766655

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.78  E-value=3.6e-08  Score=95.64  Aligned_cols=195  Identities=9%  Similarity=-0.006  Sum_probs=148.5

Q ss_pred             cCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-CCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 037816          371 DTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSK-CGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEE  449 (648)
Q Consensus       371 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  449 (648)
                      .|++++|.+++++..+..-. .          +.+ .++++.|...|..           ....|...|++++|...+.+
T Consensus         4 ~~~~~eA~~~~~~a~k~~~~-~----------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~   61 (307)
T 2ifu_A            4 AQKISEAHEHIAKAEKYLKT-S----------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ   61 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHCC-C----------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHccc-c----------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence            46778888888887754311 1          122 5788888888765           45678889999999999998


Q ss_pred             HHHcCC---CC--CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC--CC--ChhHHHHHHHHhhhcCCHHHHHHHHHh
Q 037816          450 MKLEGV---EP--TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRI--SP--RAEHYACVVDMVGRAGLLIEARSFIER  520 (648)
Q Consensus       450 m~~~~~---~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~--~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~  520 (648)
                      ..+...   .+  -..+|..+...|...|++++|...|++..+.+.-  .+  ...++..+...|.. |++++|++.|++
T Consensus        62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~  140 (307)
T 2ifu_A           62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ  140 (307)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence            875311   11  1347888888999999999999999988764211  11  24578888999988 999999999988


Q ss_pred             C-CCCC---C----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC------ccHHHHHHHHHhcCChHHHHHHHHH
Q 037816          521 M-PVKP---D----VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSP------APYILMANIYSCSGRWKERAKAIKR  586 (648)
Q Consensus       521 ~-~~~p---~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~  586 (648)
                      . .+.|   +    ..++..+...|...|++++|+..++++++..|.+.      ..+..++.++...|++++|...+++
T Consensus       141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~  220 (307)
T 2ifu_A          141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE  220 (307)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            7 1111   1    45788888999999999999999999998766543      2667778888889999999999999


Q ss_pred             HH
Q 037816          587 MK  588 (648)
Q Consensus       587 m~  588 (648)
                      ..
T Consensus       221 al  222 (307)
T 2ifu_A          221 SY  222 (307)
T ss_dssp             HT
T ss_pred             Hh
Confidence            87

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.78  E-value=7.5e-07  Score=85.65  Aligned_cols=161  Identities=10%  Similarity=-0.044  Sum_probs=121.1

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHcCC-CCCHH----HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHH
Q 037816          429 SMIAAFARHGNGFKALELYEEMKLEGV-EPTDV----TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR----AEHYA  499 (648)
Q Consensus       429 ~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~----~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~  499 (648)
                      ..+..+...|++++|..++++..+... .|+..    .+..+...+...|++++|...++++.+...-.++    ..+++
T Consensus        80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~  159 (293)
T 3u3w_A           80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN  159 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence            346677888999999999999887431 12211    2334666677888999999999999873111222    23688


Q ss_pred             HHHHHhhhcCCHHHHHHHHHhC-----CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------CccH
Q 037816          500 CVVDMVGRAGLLIEARSFIERM-----PVKPD----VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS------PAPY  564 (648)
Q Consensus       500 ~l~~~~~~~g~~~~A~~~~~~~-----~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~  564 (648)
                      .+...|...|++++|...++++     ....+    ..++..+..+|.+.|++++|+..++++++..+..      ..+|
T Consensus       160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~  239 (293)
T 3u3w_A          160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY  239 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence            8999999999999999988877     11112    3467888899999999999999999998755332      5688


Q ss_pred             HHHHHHHHhcCC-hHHHHHHHHHHHh
Q 037816          565 ILMANIYSCSGR-WKERAKAIKRMKE  589 (648)
Q Consensus       565 ~~l~~~~~~~g~-~~~A~~~~~~m~~  589 (648)
                      ..++.+|.+.|+ +++|.+.+++...
T Consensus       240 ~~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          240 YQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            999999999995 6999999998764

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.77  E-value=2.6e-08  Score=84.75  Aligned_cols=97  Identities=11%  Similarity=0.060  Sum_probs=83.7

Q ss_pred             ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHH
Q 037816          494 RAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIY  571 (648)
Q Consensus       494 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  571 (648)
                      +...+..+...+.+.|++++|+..|++. ...| +...|..+..+|...|++++|+..++++++.+|+++.++..++.+|
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   99 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL   99 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence            5666777888888889999999988887 3344 6778888888999999999999999999999999999999999999


Q ss_pred             HhcCChHHHHHHHHHHHhC
Q 037816          572 SCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       572 ~~~g~~~~A~~~~~~m~~~  590 (648)
                      ...|++++|++.+++..+.
T Consensus       100 ~~~g~~~~A~~~~~~al~~  118 (148)
T 2vgx_A          100 LQXGELAEAESGLFLAQEL  118 (148)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHH
Confidence            9999999999999998774

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.77  E-value=1.1e-07  Score=101.18  Aligned_cols=146  Identities=10%  Similarity=-0.062  Sum_probs=85.2

Q ss_pred             CChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHH
Q 037816          372 TSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP---RNSVSWNSMIAAFARHGNGFKALELYE  448 (648)
Q Consensus       372 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~  448 (648)
                      |++++|...++++.+.. +.+...+..+...|...|++++|.+.|++..+   .+...+..+...|...|++++|.+.++
T Consensus         3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~   81 (568)
T 2vsy_A            3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ   81 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            56667777776666543 34456666677777777777777777766542   345566667777777777777777777


Q ss_pred             HHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhc---CCHHHHHHHHHhC
Q 037816          449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA---GLLIEARSFIERM  521 (648)
Q Consensus       449 ~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~  521 (648)
                      +..+.. +.+...+..+..++...|++++|.+.+++..+.  .+.+...+..+...+...   |+.++|.+.+++.
T Consensus        82 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a  154 (568)
T 2vsy_A           82 QASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA  154 (568)
T ss_dssp             HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred             HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence            776643 234566666777777777777777777777653  223556666677777777   7777777777666

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.76  E-value=2.2e-07  Score=89.40  Aligned_cols=163  Identities=9%  Similarity=-0.054  Sum_probs=121.6

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC--CCC--h
Q 037816          426 SWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD------VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRI--SPR--A  495 (648)
Q Consensus       426 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~------~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~--~~~--~  495 (648)
                      .+...+..+...|++++|.+.+.+..+.... ..      ..+..+...+...|++++|...+++..+...-  .+.  .
T Consensus        77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  155 (293)
T 2qfc_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL  155 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence            4445667788889999999999888775322 22      12334555667888999999999988753111  111  4


Q ss_pred             hHHHHHHHHhhhcCCHHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------C
Q 037816          496 EHYACVVDMVGRAGLLIEARSFIERM----PVKPD-----VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD------S  560 (648)
Q Consensus       496 ~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~  560 (648)
                      .+++.+...|...|++++|...+++.    ...|+     ..++..+..+|...|++++|+..++++++..+.      -
T Consensus       156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~  235 (293)
T 2qfc_A          156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI  235 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            47888999999999999999999876    11222     257888899999999999999999999865432      1


Q ss_pred             CccHHHHHHHHHhcCChHHH-HHHHHHHHh
Q 037816          561 PAPYILMANIYSCSGRWKER-AKAIKRMKE  589 (648)
Q Consensus       561 ~~~~~~l~~~~~~~g~~~~A-~~~~~~m~~  589 (648)
                      ..+|..++.+|.+.|++++| ...+++...
T Consensus       236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~  265 (293)
T 2qfc_A          236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            46788999999999999999 777888754

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.76  E-value=2.3e-07  Score=100.49  Aligned_cols=190  Identities=12%  Similarity=-0.016  Sum_probs=139.8

Q ss_pred             hccCChhHHHHHHHHHHH-------hCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcC
Q 037816          369 GVDTSLGLGKQIHSLIIK-------SDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSMIAAFARHG  438 (648)
Q Consensus       369 ~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~  438 (648)
                      ...|++++|.+.++.+..       ...+.+...+..+..+|...|++++|...|+++.   +.+...|..+..+|...|
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g  481 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG  481 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence            667788888888887771       1225566778888888889999999999988776   346778888888999999


Q ss_pred             ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHH
Q 037816          439 NGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFI  518 (648)
Q Consensus       439 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  518 (648)
                      ++++|+..|++..+.. +-+...+..+..++...|++++ ...|+++.+.  -+.+...|..+..+|.+.|++++|++.|
T Consensus       482 ~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~  557 (681)
T 2pzi_A          482 DYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRTL  557 (681)
T ss_dssp             CHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9999999999988854 2256778888888999999999 9999998874  2336778888999999999999999999


Q ss_pred             HhC-CCCCC-HHHHHHHHHHHHHcCC-----hHHHHHHHHHHHhcCCCCCc
Q 037816          519 ERM-PVKPD-VLVWQALLGACSIHGD-----SEMGKYAAEKLFLAQPDSPA  562 (648)
Q Consensus       519 ~~~-~~~p~-~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~p~~~~  562 (648)
                      +++ ...|+ ...+..+..++...++     .+...+..+......+.++.
T Consensus       558 ~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~  608 (681)
T 2pzi_A          558 DEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR  608 (681)
T ss_dssp             HTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred             HhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence            988 66776 4566677777666554     23333334444444444444

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.76  E-value=2.1e-07  Score=84.69  Aligned_cols=129  Identities=7%  Similarity=-0.112  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHh
Q 037816          426 SWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMV  505 (648)
Q Consensus       426 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~  505 (648)
                      .+..+...+...|++++|+..|++.    +.|+...+..+..++...|++++|...+++..+.  .+.+...+..+..+|
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~   81 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLY   81 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHH
Confidence            4455666777888888888888776    3567778888888888888888888888888764  234667777888888


Q ss_pred             hhcCCHHHHHHHHHhC-CCCCC-----------------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 037816          506 GRAGLLIEARSFIERM-PVKPD-----------------VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS  560 (648)
Q Consensus       506 ~~~g~~~~A~~~~~~~-~~~p~-----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~  560 (648)
                      ...|++++|.+.|++. ...|+                 ...+..+..++...|++++|...++++++..|.+
T Consensus        82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  154 (213)
T 1hh8_A           82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  154 (213)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence            8888888888888776 22221                 2567777778888888888888888888888775

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.75  E-value=5.8e-08  Score=79.86  Aligned_cols=94  Identities=9%  Similarity=0.037  Sum_probs=55.3

Q ss_pred             hHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHh
Q 037816          496 EHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSC  573 (648)
Q Consensus       496 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  573 (648)
                      ..+......|.+.|++++|++.|++. ...| +...|..+..+|.+.|++++|+..++++++.+|.++.+|..++.+|..
T Consensus        14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~   93 (126)
T 4gco_A           14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA   93 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence            34444555555566666666655554 2233 355555566666666666666666666666666666666666666666


Q ss_pred             cCChHHHHHHHHHHHh
Q 037816          574 SGRWKERAKAIKRMKE  589 (648)
Q Consensus       574 ~g~~~~A~~~~~~m~~  589 (648)
                      .|++++|++.|++..+
T Consensus        94 ~~~~~~A~~~~~~al~  109 (126)
T 4gco_A           94 MREWSKAQRAYEDALQ  109 (126)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            6666666666666555

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.74  E-value=1.9e-06  Score=82.24  Aligned_cols=217  Identities=9%  Similarity=0.021  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccC--ChhHHHHHHHHHHHhCCCCchhHHHHHHHHH----HhC---CCHH
Q 037816          340 EEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDT--SLGLGKQIHSLIIKSDFTSNPFVNNGLINMY----SKC---GDLE  410 (648)
Q Consensus       340 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~---g~~~  410 (648)
                      ++|+.++.+++... +-+...++.--..+...+  +++++..+++.+.... +.+..+|+.-...+    ...   ++++
T Consensus        50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~  127 (306)
T 3dra_A           50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPY  127 (306)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred             HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHH
Confidence            46666666666543 122233343333444444  5555555555555443 23333333322222    222   4444


Q ss_pred             HHHHHHhhcC---CCChhHHHHHHHHHHHcCChH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc------HHHHH
Q 037816          411 DSIKVFSRMA---PRNSVSWNSMIAAFARHGNGF--KALELYEEMKLEGVEPTDVTFLSLLHACSHVGL------VNKGM  479 (648)
Q Consensus       411 ~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~------~~~A~  479 (648)
                      +++.+++.+.   ++|..+|+.-.-.+.+.|+++  ++++.++++.+.. .-|...|+.-...+...+.      +++++
T Consensus       128 ~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl  206 (306)
T 3dra_A          128 REFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEEL  206 (306)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHH
Confidence            5555444443   224444444444444444444  5555555555433 2233444433333333333      44444


Q ss_pred             HHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 037816          480 EFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIE-ARSFIERM-PV----KPDVLVWQALLGACSIHGDSEMGKYAAEKL  553 (648)
Q Consensus       480 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  553 (648)
                      +.++++...  .+-|...|+.+...+.+.|+..+ +.++..++ ..    ..++..+..+..+|.+.|+.++|+++++.+
T Consensus       207 ~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l  284 (306)
T 3dra_A          207 NYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL  284 (306)
T ss_dssp             HHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence            444444432  12244444444444444443222 22333333 11    123334444444444444444444444444


Q ss_pred             Hh-cCCCCC
Q 037816          554 FL-AQPDSP  561 (648)
Q Consensus       554 ~~-~~p~~~  561 (648)
                      .+ .+|...
T Consensus       285 ~~~~Dpir~  293 (306)
T 3dra_A          285 KSKYNPIRS  293 (306)
T ss_dssp             HHTTCGGGH
T ss_pred             HhccChHHH
Confidence            43 344433

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.74  E-value=7.1e-06  Score=84.66  Aligned_cols=82  Identities=7%  Similarity=-0.040  Sum_probs=47.5

Q ss_pred             CChhHHHHhhccCC--CCCcccHHHHHHHHHhcCC-chHHHHHHHHHHHc-CCCCCcHhHHHHHHHHhhc----cCChHH
Q 037816          103 DQMRNAVKLFDDMP--MRDTVSWNTMVSGFLRNGE-FDMGFGFFKRSLEL-GFYQLDQASFTIILSACDR----SELSLV  174 (648)
Q Consensus       103 g~~~~A~~~~~~~~--~~~~~~y~~li~~~~~~g~-~~~A~~~~~~m~~~-~~~p~~~~~~~~ll~~~~~----~~~~~~  174 (648)
                      |+++.+..+|+...  .|+...|...+.-..+.+. .+....+|+..... |..|++...|..-+..+..    .++.+.
T Consensus        28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~  107 (493)
T 2uy1_A           28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK  107 (493)
T ss_dssp             TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence            66777777777655  3566666666665555542 34556666665543 4445444466666665442    345666


Q ss_pred             HHHHHHHHHH
Q 037816          175 SKMIHCLVYL  184 (648)
Q Consensus       175 a~~~~~~~~~  184 (648)
                      +..+++..+.
T Consensus       108 vR~iy~rAL~  117 (493)
T 2uy1_A          108 IRNGYMRALQ  117 (493)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            7777777765

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.74  E-value=2.9e-07  Score=84.69  Aligned_cols=185  Identities=12%  Similarity=-0.011  Sum_probs=131.0

Q ss_pred             CHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCC-C-chhHHHHHHHHHHhCCCHHHHHHHHhhcCC--C-Chh---HHH
Q 037816          357 DPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT-S-NPFVNNGLINMYSKCGDLEDSIKVFSRMAP--R-NSV---SWN  428 (648)
Q Consensus       357 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~---~~~  428 (648)
                      +...+..+...+...|++++|...|+.+.+.... + ....+..+..+|.+.|++++|...|+++.+  | +..   .+.
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            3445666677888999999999999999976422 1 235777889999999999999999998752  3 222   444


Q ss_pred             HHHHHHHH------------------cCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHhHHhc
Q 037816          429 SMIAAFAR------------------HGNGFKALELYEEMKLEGVEPTDV-TFLSLLHACSHVGLVNKGMEFLKSMTEVH  489 (648)
Q Consensus       429 ~l~~~~~~------------------~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~  489 (648)
                      .+..++..                  .|++++|...|+++.+..  |+.. .......          ...+...+.   
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~----------l~~~~~~~~---  147 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKR----------LVFLKDRLA---  147 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHH----------HHHHHHHHH---
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHH----------HHHHHHHHH---
Confidence            55555554                  578999999999999853  5432 2221111          001111111   


Q ss_pred             CCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc
Q 037816          490 RISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPD----VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPA  562 (648)
Q Consensus       490 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~  562 (648)
                            .....+...|.+.|++++|+..|+++ ...|+    ...+..+..++.+.|+.++|++.++.+....|++..
T Consensus       148 ------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~  219 (225)
T 2yhc_A          148 ------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE  219 (225)
T ss_dssp             ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred             ------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence                  11234677889999999999999988 33444    256788889999999999999999999888887654

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.72  E-value=5.7e-07  Score=81.48  Aligned_cols=183  Identities=13%  Similarity=0.009  Sum_probs=121.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHH-HHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhC
Q 037816          328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPN-MVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKC  406 (648)
Q Consensus       328 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~  406 (648)
                      .....+...|++++|+..|++..+..  |+.. .+.. . .   ....              ..........+..+|.+.
T Consensus         9 ~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~-~-~---~~~~--------------~~~~~~~~~~lg~~~~~~   67 (208)
T 3urz_A            9 QKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYW-T-N---VDKN--------------SEISSKLATELALAYKKN   67 (208)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHH-H-H---SCTT--------------SHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHH-h-h---hcch--------------hhhhHHHHHHHHHHHHHC
Confidence            34456778899999999999887753  4332 2211 0 0   0000              011122334578888899


Q ss_pred             CCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc--HHHHHHH
Q 037816          407 GDLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGL--VNKGMEF  481 (648)
Q Consensus       407 g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~--~~~A~~~  481 (648)
                      |++++|...|++..   +.+...+..+..++...|++++|+..|++..+.. +-+...+..+..++...|.  .+.+...
T Consensus        68 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~  146 (208)
T 3urz_A           68 RNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETD  146 (208)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            99999999998775   3467888899999999999999999999999864 3356778888877766554  3445555


Q ss_pred             HHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 037816          482 LKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPDVLVWQALLG  535 (648)
Q Consensus       482 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~  535 (648)
                      ++...   ...|....+.....++...|++++|...|++. ...|+......+.+
T Consensus       147 ~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~  198 (208)
T 3urz_A          147 YKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK  198 (208)
T ss_dssp             HC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred             HHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            55542   22333334445566777789999999999987 77888765554443

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.71  E-value=1.4e-07  Score=77.52  Aligned_cols=109  Identities=8%  Similarity=-0.072  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 037816          460 VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGAC  537 (648)
Q Consensus       460 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~  537 (648)
                      ..+......+.+.|++++|++.|++..+.  -+.+...|..+..+|.+.|++++|++.+++. .+.| +...|..+..++
T Consensus        14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~   91 (126)
T 4gco_A           14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL   91 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence            45667778888899999999999988774  3447888888899999999999999998887 4444 477899999999


Q ss_pred             HHcCChHHHHHHHHHHHhcCCCCCccHHHHHHH
Q 037816          538 SIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI  570 (648)
Q Consensus       538 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  570 (648)
                      ...|++++|+..|+++++.+|+++.++..+..+
T Consensus        92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~  124 (126)
T 4gco_A           92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRNC  124 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence            999999999999999999999999888887765

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.70  E-value=2.2e-07  Score=80.50  Aligned_cols=127  Identities=8%  Similarity=-0.028  Sum_probs=98.7

Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 037816          461 TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACS  538 (648)
Q Consensus       461 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~  538 (648)
                      .+..+...+...|++++|...+++..+.  .+.+...+..+...+...|++++|.+.+++. ...| +...+..+..++.
T Consensus        15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~   92 (166)
T 1a17_A           15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            4555666677778888888888877763  2336777777888888888888888888776 3333 5777888888999


Q ss_pred             HcCChHHHHHHHHHHHhcCCCCCccHHHHHHH--HHhcCChHHHHHHHHHHHh
Q 037816          539 IHGDSEMGKYAAEKLFLAQPDSPAPYILMANI--YSCSGRWKERAKAIKRMKE  589 (648)
Q Consensus       539 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~  589 (648)
                      ..|++++|+..++++++..|.+..++..+..+  +...|++++|++.+++...
T Consensus        93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A           93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence            99999999999999999999988877554444  7788999999999887654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.69  E-value=1.9e-07  Score=82.15  Aligned_cols=156  Identities=10%  Similarity=-0.016  Sum_probs=113.7

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-Hhc
Q 037816          396 NNGLINMYSKCGDLEDSIKVFSRMAP---RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHA-CSH  471 (648)
Q Consensus       396 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~-~~~  471 (648)
                      +..+...+...|++++|...|++..+   .+...+..+...+...|++++|+..+++..+..  |+...+..+... +..
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~   86 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ   86 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence            34456677888899999998888773   466778888888888999999999888877643  444333222211 122


Q ss_pred             cCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHHcCChHHHH
Q 037816          472 VGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPD---VLVWQALLGACSIHGDSEMGK  547 (648)
Q Consensus       472 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~g~~~~A~  547 (648)
                      .+....|...+++..+.  .+.+...+..+...+...|++++|...|+++ ...|+   ...+..+..++...|+.++|.
T Consensus        87 ~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~  164 (176)
T 2r5s_A           87 QAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA  164 (176)
T ss_dssp             HHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred             hcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence            22233467888888763  2336788888999999999999999999887 55554   557888888899999999999


Q ss_pred             HHHHHHHh
Q 037816          548 YAAEKLFL  555 (648)
Q Consensus       548 ~~~~~~~~  555 (648)
                      ..|++++.
T Consensus       165 ~~y~~al~  172 (176)
T 2r5s_A          165 SKYRRQLY  172 (176)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            98888754

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.69  E-value=1e-05  Score=83.52  Aligned_cols=366  Identities=10%  Similarity=-0.043  Sum_probs=204.8

Q ss_pred             cC-CchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCC-hhHH
Q 037816          133 NG-EFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGS-SSSG  210 (648)
Q Consensus       133 ~g-~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A  210 (648)
                      .| +.+.|..+|+++...-  |.               ++.+.+..+|+.....  .|+...|...+....+.++ .+..
T Consensus         7 ~~~~i~~aR~vyer~l~~~--P~---------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i   67 (493)
T 2uy1_A            7 MGVELSSPSAIMEHARRLY--MS---------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL   67 (493)
T ss_dssp             -----CCHHHHHHHHHHHH--HT---------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred             cCcchHHHHHHHHHHHHHC--CC---------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence            45 3677777777766531  21               7888888888888763  4688888888877776653 3444


Q ss_pred             HHHhcccCC------CCcccHHHHHHHHH----HCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhh---ccCChHHHH
Q 037816          211 RKVFGEMRV------RNVITWTAVISGLV----QNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS---GLQALCEGR  277 (648)
Q Consensus       211 ~~~~~~~~~------~~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~---~~~~~~~a~  277 (648)
                      ..+|+....      .+...|...+..+.    ..|+.+.+.++|++...  +++..  +..+-..|.   ...+...+.
T Consensus        68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~--~P~~~--~~~lw~~Y~~fE~~~~~~~~~  143 (493)
T 2uy1_A           68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ--TPMGS--LSELWKDFENFELELNKITGK  143 (493)
T ss_dssp             HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT--SCCTT--HHHHHHHHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh--Chhhh--HHHHHHHHHHHHHHhccccHH
Confidence            555554431      24455666555433    23566778888888876  22211  111111111   111122222


Q ss_pred             HHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC----CCcccHHHHHHHHHHcC-------CHHHHHHHH
Q 037816          278 QIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE----LDGVSMTVILVGFAQNG-------FEEEAMQLF  346 (648)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~-------~~~~a~~~~  346 (648)
                      .++.+..                     +.+..|..+++.+..    .+...|...+.--...+       ..+.+..+|
T Consensus       144 ~~~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~y  202 (493)
T 2uy1_A          144 KIVGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIH  202 (493)
T ss_dssp             HHHHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHH
T ss_pred             HHHHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHH
Confidence            2222211                     112222222222211    12223433333221110       034566788


Q ss_pred             HHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHH-HHHHHhhcC--C--
Q 037816          347 VKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLED-SIKVFSRMA--P--  421 (648)
Q Consensus       347 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~--~--  421 (648)
                      +++.... +.+...|...+.-+...|+.+.|..+++.....  |.+...+..    |....+.++ ...+.+...  .  
T Consensus       203 e~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~  275 (493)
T 2uy1_A          203 NYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAE  275 (493)
T ss_dssp             HHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC-----
T ss_pred             HHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccc
Confidence            8877753 555777777777777888999999999998887  444433332    222111111 111222111  0  


Q ss_pred             -----C---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-cCcHHHHHHHHHHhHHhcCCC
Q 037816          422 -----R---NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSH-VGLVNKGMEFLKSMTEVHRIS  492 (648)
Q Consensus       422 -----~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~g~~~~A~~~~~~~~~~~~~~  492 (648)
                           +   ....|...+....+.++.+.|..+|++. .. ...+...|......-.. .++.+.|..+|+...+.+  +
T Consensus       276 ~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~--~  351 (493)
T 2uy1_A          276 SAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH--P  351 (493)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--T
T ss_pred             hhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--C
Confidence                 1   1245666666666778889999999988 32 12344444332222122 336889999999988853  2


Q ss_pred             CChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 037816          493 PRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFL  555 (648)
Q Consensus       493 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  555 (648)
                      .++..+...++...+.|+.+.|..+|+++.  .....|...+..-...|+.+.+..+++++.+
T Consensus       352 ~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          352 DSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            345566777887888899999999999982  2467777777777778999988888888764

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.69  E-value=1.9e-07  Score=78.79  Aligned_cols=97  Identities=12%  Similarity=-0.007  Sum_probs=83.2

Q ss_pred             ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHH
Q 037816          494 RAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIY  571 (648)
Q Consensus       494 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  571 (648)
                      +...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++.+|.++.++..++.+|
T Consensus        17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   96 (142)
T 2xcb_A           17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH   96 (142)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence            4556667777888889999999888887 3344 5777888888999999999999999999999999999999999999


Q ss_pred             HhcCChHHHHHHHHHHHhC
Q 037816          572 SCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       572 ~~~g~~~~A~~~~~~m~~~  590 (648)
                      ...|++++|++.+++..+.
T Consensus        97 ~~~g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A           97 LQLGDLDGAESGFYSARAL  115 (142)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHh
Confidence            9999999999999998774

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.68  E-value=8.2e-07  Score=80.69  Aligned_cols=129  Identities=10%  Similarity=-0.010  Sum_probs=111.3

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcH
Q 037816          396 NNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLV  475 (648)
Q Consensus       396 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~  475 (648)
                      +..+...+...|++++|...|++..+++...|..+...|...|++++|+..+++..+.. +.+...+..+..++...|++
T Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~   87 (213)
T 1hh8_A            9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY   87 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence            44566778899999999999999988888999999999999999999999999999864 44678888999999999999


Q ss_pred             HHHHHHHHHhHHhcCCCCCh----------------hHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCH
Q 037816          476 NKGMEFLKSMTEVHRISPRA----------------EHYACVVDMVGRAGLLIEARSFIERM-PVKPDV  527 (648)
Q Consensus       476 ~~A~~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~  527 (648)
                      ++|...++++.+.  .+.+.                ..+..+..+|.+.|++++|.+.|++. ...|+.
T Consensus        88 ~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  154 (213)
T 1hh8_A           88 DLAIKDLKEALIQ--LRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  154 (213)
T ss_dssp             HHHHHHHHHHHHT--TTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHHHHHHh--CCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence            9999999999873  22233                78889999999999999999999998 666764

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.67  E-value=9.9e-07  Score=84.41  Aligned_cols=162  Identities=9%  Similarity=0.021  Sum_probs=99.7

Q ss_pred             CHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC--CChhHHH-HHHHH
Q 037816          357 DPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP--RNSVSWN-SMIAA  433 (648)
Q Consensus       357 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~-~l~~~  433 (648)
                      +...+..+...+...|+++.|...++.+.... |.+...+..+...+.+.|++++|...++++..  |+..... .....
T Consensus       116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~  194 (287)
T 3qou_A          116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE  194 (287)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence            34445555556666667777777766666554 44566677777777777788888777777753  3322221 12223


Q ss_pred             HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHH
Q 037816          434 FARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIE  513 (648)
Q Consensus       434 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  513 (648)
                      +...++.++|...+++..+.. +.+...+..+...+...|++++|...|.++.+...-..+...+..++..|...|+.++
T Consensus       195 l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~  273 (287)
T 3qou_A          195 LLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA  273 (287)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred             HHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence            555666667777777776653 3355666677777777777777777777776641111125566666666666666666


Q ss_pred             HHHHHHh
Q 037816          514 ARSFIER  520 (648)
Q Consensus       514 A~~~~~~  520 (648)
                      |...+++
T Consensus       274 a~~~~r~  280 (287)
T 3qou_A          274 LASXYRR  280 (287)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6665554

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.67  E-value=1.3e-05  Score=76.42  Aligned_cols=213  Identities=14%  Similarity=0.129  Sum_probs=167.6

Q ss_pred             ChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC--CHHHHHHHHhhcC---CCChhHHHHHHHHH----HHc---CCh
Q 037816          373 SLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCG--DLEDSIKVFSRMA---PRNSVSWNSMIAAF----ARH---GNG  440 (648)
Q Consensus       373 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~---~~~~~~~~~l~~~~----~~~---~~~  440 (648)
                      ..++|....+.+...+ |.+..+++.--..+...|  +++++++.++.+.   +.+..+|+.--..+    ...   +++
T Consensus        48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~  126 (306)
T 3dra_A           48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP  126 (306)
T ss_dssp             CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred             CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence            3457888888888776 556677888788888888  9999999999876   34566676655554    455   789


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHH--HHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCC------HH
Q 037816          441 FKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVN--KGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL------LI  512 (648)
Q Consensus       441 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~  512 (648)
                      ++++.+++++.+.. +-|...|+.-...+.+.|.++  ++++.++++.+.  -+-|-..|+.-...+.+.|+      ++
T Consensus       127 ~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~  203 (306)
T 3dra_A          127 YREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTID  203 (306)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred             HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHH
Confidence            99999999999865 447788887777777788887  999999999884  33477788777777777776      89


Q ss_pred             HHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhcC---CCCCccHHHHHHHHHhcCChHHHHHHHHH
Q 037816          513 EARSFIERM-PVKP-DVLVWQALLGACSIHGDS-EMGKYAAEKLFLAQ---PDSPAPYILMANIYSCSGRWKERAKAIKR  586 (648)
Q Consensus       513 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  586 (648)
                      ++++.++++ ...| |...|+.+...+.+.|+. +....+.+++.+.+   |.++.++..++.+|.+.|+.++|+++++.
T Consensus       204 eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~  283 (306)
T 3dra_A          204 EELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL  283 (306)
T ss_dssp             HHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence            999998887 3344 677888888888888874 44556777777665   78888999999999999999999999999


Q ss_pred             HHh
Q 037816          587 MKE  589 (648)
Q Consensus       587 m~~  589 (648)
                      +.+
T Consensus       284 l~~  286 (306)
T 3dra_A          284 LKS  286 (306)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            875

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.64  E-value=6.4e-08  Score=92.40  Aligned_cols=192  Identities=10%  Similarity=-0.003  Sum_probs=124.9

Q ss_pred             chhHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037816          392 NPFVNNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHA  468 (648)
Q Consensus       392 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~  468 (648)
                      +...+..+...+.+.|++++|...|++..   +.+...|..+..+|.+.|++++|+..+++..+.. +.+...+..+..+
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~   81 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC   81 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            34455666677777788888877777654   3366777778888888888888888888887743 2356677778888


Q ss_pred             HhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 037816          469 CSHVGLVNKGMEFLKSMTEVHRISP-RAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGDSEMGK  547 (648)
Q Consensus       469 ~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~  547 (648)
                      +...|++++|...|+++.+.   .| +...+...+....+..+...... .......++......+.. + ..|+.++|+
T Consensus        82 ~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~-l-~~~~~~~A~  155 (281)
T 2c2l_A           82 QLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTR-L-IAAEREREL  155 (281)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHH-H-HHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHH-H-HHHHHHHHH
Confidence            88888888888888887663   22 11111111221111111111111 122233344444433422 2 368999999


Q ss_pred             HHHHHHHhcCCCCCccHHHHHHHHHhc-CChHHHHHHHHHHHhC
Q 037816          548 YAAEKLFLAQPDSPAPYILMANIYSCS-GRWKERAKAIKRMKEM  590 (648)
Q Consensus       548 ~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~  590 (648)
                      +.++++++.+|++......+...+.+. +++++|.++|+++.+.
T Consensus       156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~  199 (281)
T 2c2l_A          156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK  199 (281)
T ss_dssp             TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred             HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            999999999998877777777777766 7789999999988653

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.63  E-value=4.6e-07  Score=73.96  Aligned_cols=115  Identities=17%  Similarity=0.179  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHH
Q 037816          459 DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PV-KPDVLVWQALLGA  536 (648)
Q Consensus       459 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~  536 (648)
                      ...+..+...+...|++++|...++++.+.  .+.+...+..+...+.+.|++++|...++++ .. ..+..++..+...
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~   86 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA   86 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence            445666667777777777777777777663  2335666777777777888888888777776 22 3356777888888


Q ss_pred             HHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcC
Q 037816          537 CSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSG  575 (648)
Q Consensus       537 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  575 (648)
                      +...|++++|...++++.+..|.++.++..++.++...|
T Consensus        87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            888999999999999999888988888888887776544

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.62  E-value=4.6e-06  Score=80.05  Aligned_cols=201  Identities=5%  Similarity=-0.086  Sum_probs=138.1

Q ss_pred             HHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhH---HHHHHHHHHhCCCHHHHHHHHhhcCCC
Q 037816          346 FVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFV---NNGLINMYSKCGDLEDSIKVFSRMAPR  422 (648)
Q Consensus       346 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~  422 (648)
                      +.++......|+..++..+...+...-         +.+.......+...   +...+..+...|++++|...+++....
T Consensus        34 ~s~~e~g~~~~~~~~l~~i~~~l~~~~---------~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~  104 (293)
T 3u3w_A           34 VSRIESGAVYPSMDILQGIAAKLQIPI---------IHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKK  104 (293)
T ss_dssp             HHHHHTTSCCCCHHHHHHHHHHHTCCT---------HHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHCCCCCCCHHHHHHHHHHhCcCH---------HHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence            334433334677777666666554321         11121111222222   223467788999999999999886532


Q ss_pred             ---Ch------hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 037816          423 ---NS------VSWNSMIAAFARHGNGFKALELYEEMKLEGVE-PT----DVTFLSLLHACSHVGLVNKGMEFLKSMTEV  488 (648)
Q Consensus       423 ---~~------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~-p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~  488 (648)
                         +.      ..+..+...+...|++++|+..+++..+.... ++    ..+++.+...|...|++++|...++++.+.
T Consensus       105 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  184 (293)
T 3u3w_A          105 EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQ  184 (293)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence               11      13334666677788999999999999984322 22    236888999999999999999999998752


Q ss_pred             c----CCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHcCC-hHHHHHHHHHHH
Q 037816          489 H----RISP-RAEHYACVVDMVGRAGLLIEARSFIERM-------PVKPD-VLVWQALLGACSIHGD-SEMGKYAAEKLF  554 (648)
Q Consensus       489 ~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~-~~~A~~~~~~~~  554 (648)
                      .    +..+ ...++..+...|.+.|++++|.+.+++.       +..+. ..+|..+..++.+.|+ +++|+..+++++
T Consensus       185 ~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al  264 (293)
T 3u3w_A          185 LEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            1    1112 3447888999999999999999999876       22222 6778889999999995 699999999987


Q ss_pred             h
Q 037816          555 L  555 (648)
Q Consensus       555 ~  555 (648)
                      .
T Consensus       265 ~  265 (293)
T 3u3w_A          265 F  265 (293)
T ss_dssp             H
T ss_pred             H
Confidence            5

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.62  E-value=3.8e-07  Score=75.53  Aligned_cols=116  Identities=9%  Similarity=-0.049  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 037816          459 DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGA  536 (648)
Q Consensus       459 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~  536 (648)
                      ...+..+...+...|++++|...+++..+.  .+.+...+..+...|...|++++|.+.+++. ...| +...+..+..+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~   93 (133)
T 2lni_A           16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA   93 (133)
T ss_dssp             HHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence            445555666666666666666666666542  2235566666666666777777777766665 2223 46677778888


Q ss_pred             HHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCC
Q 037816          537 CSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGR  576 (648)
Q Consensus       537 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  576 (648)
                      +...|++++|+..++++++..|.+..++..++.++...|+
T Consensus        94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence            8888999999999999988888888888888888877664

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.62  E-value=3.4e-07  Score=75.46  Aligned_cols=117  Identities=12%  Similarity=-0.046  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 037816          459 DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGA  536 (648)
Q Consensus       459 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~  536 (648)
                      ...+..+...+...|++++|...+++....  .+.+...+..+...+...|++++|.+.+++. ...| +...+..+..+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~   89 (131)
T 2vyi_A           12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA   89 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence            345566666777777788888777777663  2335667777777788888888888887776 3333 46778888888


Q ss_pred             HHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCCh
Q 037816          537 CSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRW  577 (648)
Q Consensus       537 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  577 (648)
                      +...|++++|...++++++..|.++.++..++.++...|++
T Consensus        90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999888899999988888875

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.59  E-value=1.5e-07  Score=82.81  Aligned_cols=120  Identities=7%  Similarity=0.059  Sum_probs=80.3

Q ss_pred             hccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHHcCCh--H
Q 037816          470 SHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGA-CSIHGDS--E  544 (648)
Q Consensus       470 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~-~~~~g~~--~  544 (648)
                      ...|++++|...+++..+.  .+.+...+..+...|...|++++|...|++. ...| +...+..+..+ +...|++  +
T Consensus        21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~   98 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA   98 (177)
T ss_dssp             C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred             hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence            3456666676777666653  2335566667777777777777777777666 2223 45566666666 6677777  8


Q ss_pred             HHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037816          545 MGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMG  591 (648)
Q Consensus       545 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  591 (648)
                      +|+..++++++..|.++.++..++.+|...|++++|...++++.+..
T Consensus        99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  145 (177)
T 2e2e_A           99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN  145 (177)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence            88888888888888777778888888888888888888888777643

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.55  E-value=4.8e-07  Score=88.73  Aligned_cols=94  Identities=13%  Similarity=-0.032  Sum_probs=81.6

Q ss_pred             hhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHH
Q 037816          495 AEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYS  572 (648)
Q Consensus       495 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  572 (648)
                      ...|..+..+|.+.|++++|++.+++. .+.| +...|..+..+|...|++++|+..|+++++.+|.+..++..++.++.
T Consensus       196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~  275 (336)
T 1p5q_A          196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ  275 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            467888888888899999999888887 4444 57788899999999999999999999999999999999999999999


Q ss_pred             hcCChHHH-HHHHHHHH
Q 037816          573 CSGRWKER-AKAIKRMK  588 (648)
Q Consensus       573 ~~g~~~~A-~~~~~~m~  588 (648)
                      ..|++++| ...+++|.
T Consensus       276 ~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          276 RIRRQLAREKKLYANMF  292 (336)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999 45666664

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.55  E-value=4.2e-07  Score=74.69  Aligned_cols=96  Identities=13%  Similarity=-0.015  Sum_probs=78.2

Q ss_pred             hhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHH
Q 037816          495 AEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYS  572 (648)
Q Consensus       495 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  572 (648)
                      ...+..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++.+|.++.++..++.++.
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   83 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI   83 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            345666777778888888888888776 3334 57778888888888899999999999999999988888999999999


Q ss_pred             hcCChHHHHHHHHHHHhC
Q 037816          573 CSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       573 ~~g~~~~A~~~~~~m~~~  590 (648)
                      ..|++++|++.+++..+.
T Consensus        84 ~~~~~~~A~~~~~~al~~  101 (126)
T 3upv_A           84 AVKEYASALETLDAARTK  101 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HHhCHHHHHHHHHHHHHh
Confidence            999999999998888764

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.53  E-value=5.8e-06  Score=74.98  Aligned_cols=158  Identities=11%  Similarity=0.024  Sum_probs=98.4

Q ss_pred             CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccC----ChhHHHHHHHHHHHhCCCCchhHHH
Q 037816          322 DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDT----SLGLGKQIHSLIIKSDFTSNPFVNN  397 (648)
Q Consensus       322 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~  397 (648)
                      ++..+..+...|...+++++|+..|++..+.|   +...+..+-..+.. +    +.++|..+++...+.|   ++..+.
T Consensus        17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~   89 (212)
T 3rjv_A           17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI   89 (212)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence            44455555556666666667777776666654   34445555555555 4    6777777777766554   445555


Q ss_pred             HHHHHHHh----CCCHHHHHHHHhhcCCCC-----hhHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 037816          398 GLINMYSK----CGDLEDSIKVFSRMAPRN-----SVSWNSMIAAFAR----HGNGFKALELYEEMKLEGVEPTDVTFLS  464 (648)
Q Consensus       398 ~li~~~~~----~g~~~~A~~~~~~~~~~~-----~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~  464 (648)
                      .|...|..    .+++++|...|++..+.+     ...+..|...|..    .+++++|...|++..+.  ..+...+..
T Consensus        90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~  167 (212)
T 3rjv_A           90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYW  167 (212)
T ss_dssp             HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHH
T ss_pred             HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHH
Confidence            66666655    667777777777765432     4666667777776    66777777777777765  133445555


Q ss_pred             HHHHHhcc-C-----cHHHHHHHHHHhHHh
Q 037816          465 LLHACSHV-G-----LVNKGMEFLKSMTEV  488 (648)
Q Consensus       465 ll~~~~~~-g-----~~~~A~~~~~~~~~~  488 (648)
                      |...|... |     ++++|..+|+...+.
T Consensus       168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~  197 (212)
T 3rjv_A          168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLE  197 (212)
T ss_dssp             HHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence            55555432 2     677777777777664

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.53  E-value=5.9e-07  Score=71.66  Aligned_cols=99  Identities=16%  Similarity=0.035  Sum_probs=83.9

Q ss_pred             ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--CCccHHHHHH
Q 037816          494 RAEHYACVVDMVGRAGLLIEARSFIERM-PVK-PDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD--SPAPYILMAN  569 (648)
Q Consensus       494 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~  569 (648)
                      +...+..+...+...|++++|...+++. ... .+...+..+..++...|++++|+..++++++..|.  +..++..++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~   84 (112)
T 2kck_A            5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD   84 (112)
T ss_dssp             STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence            4566777888888888888888888877 333 35777888888899999999999999999999999  8899999999


Q ss_pred             HHHhc-CChHHHHHHHHHHHhCCC
Q 037816          570 IYSCS-GRWKERAKAIKRMKEMGV  592 (648)
Q Consensus       570 ~~~~~-g~~~~A~~~~~~m~~~~~  592 (648)
                      ++... |++++|.+.+++..+...
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~p  108 (112)
T 2kck_A           85 ALRYIEGKEVEAEIAEARAKLEHH  108 (112)
T ss_dssp             HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred             HHHHHhCCHHHHHHHHHHHhhccc
Confidence            99999 999999999999887654

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.52  E-value=2.1e-06  Score=82.51  Aligned_cols=161  Identities=6%  Similarity=-0.086  Sum_probs=118.2

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHhhcCC---CCh------hHHHHHHHHHHHcCChHHHHHHHHHHHHcCC---CCC--HH
Q 037816          395 VNNGLINMYSKCGDLEDSIKVFSRMAP---RNS------VSWNSMIAAFARHGNGFKALELYEEMKLEGV---EPT--DV  460 (648)
Q Consensus       395 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~---~p~--~~  460 (648)
                      .+...+..+...|++++|.+.+.+..+   ...      ..+..+...+...|++++|+..+++..+...   .+.  ..
T Consensus        77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  156 (293)
T 2qfc_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            444566778888999999888875431   111      2334455667778899999999999876321   122  44


Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHhhhcCCHHHHHHHHHhC-CC------CC-CH
Q 037816          461 TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR-----AEHYACVVDMVGRAGLLIEARSFIERM-PV------KP-DV  527 (648)
Q Consensus       461 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~------~p-~~  527 (648)
                      +++.+...|...|++++|...++++.+.....|+     ..++..+...|.+.|++++|++.+++. .+      .. -.
T Consensus       157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~  236 (293)
T 2qfc_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG  236 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            7888889999999999999999998732111222     258888999999999999999999876 11      11 16


Q ss_pred             HHHHHHHHHHHHcCChHHH-HHHHHHHHh
Q 037816          528 LVWQALLGACSIHGDSEMG-KYAAEKLFL  555 (648)
Q Consensus       528 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~  555 (648)
                      .+|..+..+|...|++++| ...+++++.
T Consensus       237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~  265 (293)
T 2qfc_A          237 QLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            6788899999999999999 778888865

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.52  E-value=6.7e-07  Score=75.80  Aligned_cols=105  Identities=8%  Similarity=-0.086  Sum_probs=85.8

Q ss_pred             CCC-CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 037816          455 VEP-TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQ  531 (648)
Q Consensus       455 ~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~  531 (648)
                      +.| +...+..+...+.+.|++++|...|+++.+.  -+.+...|..+..+|...|++++|++.|++. .+.| ++..|.
T Consensus        31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~  108 (151)
T 3gyz_A           31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF  108 (151)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence            345 3446777778888999999999999999874  2347888889999999999999999999888 4445 467788


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 037816          532 ALLGACSIHGDSEMGKYAAEKLFLAQPDSP  561 (648)
Q Consensus       532 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~  561 (648)
                      .+..+|...|++++|+..|+++++..|+++
T Consensus       109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          109 HTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            899999999999999999999999988763

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.49  E-value=3e-07  Score=75.71  Aligned_cols=95  Identities=7%  Similarity=-0.030  Sum_probs=73.2

Q ss_pred             hHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc-------cHHH
Q 037816          496 EHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPA-------PYIL  566 (648)
Q Consensus       496 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~~  566 (648)
                      ..+..+...+.+.|++++|++.|++. .+.| +...|..+..+|...|++++|+..++++++..|.+..       +|..
T Consensus         9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~   88 (127)
T 4gcn_A            9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR   88 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence            34566777788888888888888776 4444 4667888888888888888888888888888776653       5667


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhC
Q 037816          567 MANIYSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       567 l~~~~~~~g~~~~A~~~~~~m~~~  590 (648)
                      ++.++...|++++|++.+++.++.
T Consensus        89 lg~~~~~~~~~~~A~~~~~kal~~  112 (127)
T 4gcn_A           89 AGNAFQKQNDLSLAVQWFHRSLSE  112 (127)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhh
Confidence            777888888899999888887663

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.49  E-value=2.1e-06  Score=74.32  Aligned_cols=107  Identities=16%  Similarity=0.003  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 037816          459 DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGA  536 (648)
Q Consensus       459 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~  536 (648)
                      ...+..+...+...|++++|+..|++..+.  .+.+...|..+..+|.+.|++++|+..|++. .+.| +...|..+..+
T Consensus        11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~   88 (164)
T 3sz7_A           11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA   88 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            445666666677777777777777777653  2235666666677777777777777776666 3333 35566666666


Q ss_pred             HHHcCChHHHHHHHHHHHhcCCCCCccHHHH
Q 037816          537 CSIHGDSEMGKYAAEKLFLAQPDSPAPYILM  567 (648)
Q Consensus       537 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l  567 (648)
                      |...|++++|+..++++++..|.+...+...
T Consensus        89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  119 (164)
T 3sz7_A           89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKR  119 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence            7777777777777777777777666644433

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.48  E-value=1.6e-06  Score=77.97  Aligned_cols=153  Identities=10%  Similarity=-0.008  Sum_probs=84.8

Q ss_pred             HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCC-ChhHHHHHHHHhhhcCCH
Q 037816          436 RHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVH---RISP-RAEHYACVVDMVGRAGLL  511 (648)
Q Consensus       436 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~  511 (648)
                      ..|++++|.++++.+.. ........+..+...+...|++++|...+++..+..   +..| ...++..+...|...|++
T Consensus         4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~   82 (203)
T 3gw4_A            4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW   82 (203)
T ss_dssp             ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence            34555555553333322 111233455555555566666666666666554411   1111 334555566666666666


Q ss_pred             HHHHHHHHhC-C---CCC-C----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--CC----CccHHHHHHHHHhcCC
Q 037816          512 IEARSFIERM-P---VKP-D----VLVWQALLGACSIHGDSEMGKYAAEKLFLAQP--DS----PAPYILMANIYSCSGR  576 (648)
Q Consensus       512 ~~A~~~~~~~-~---~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p--~~----~~~~~~l~~~~~~~g~  576 (648)
                      ++|.+.+++. .   ..+ +    ...+..+...+...|++++|+..++++++..+  .+    ..++..++.++...|+
T Consensus        83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  162 (203)
T 3gw4_A           83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN  162 (203)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence            6666666554 1   011 2    33456666777777888888887777765422  11    1235677778888888


Q ss_pred             hHHHHHHHHHHHh
Q 037816          577 WKERAKAIKRMKE  589 (648)
Q Consensus       577 ~~~A~~~~~~m~~  589 (648)
                      +++|.+.+++..+
T Consensus       163 ~~~A~~~~~~al~  175 (203)
T 3gw4_A          163 LLEAQQHWLRARD  175 (203)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            8888888777655

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.47  E-value=2.6e-07  Score=78.43  Aligned_cols=106  Identities=8%  Similarity=-0.114  Sum_probs=84.4

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 037816          458 TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLG  535 (648)
Q Consensus       458 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~  535 (648)
                      +...+..+...+...|++++|...|+++...  -+.+...|..+..+|...|++++|++.|++. ...| ++..+..+..
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~   97 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAE   97 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence            3445666777788888888998888888763  3347778888888888899999999888887 3444 4677888888


Q ss_pred             HHHHcCChHHHHHHHHHHHhcCCCCCccHH
Q 037816          536 ACSIHGDSEMGKYAAEKLFLAQPDSPAPYI  565 (648)
Q Consensus       536 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~  565 (648)
                      +|...|++++|+..++++++..|.++....
T Consensus        98 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  127 (148)
T 2vgx_A           98 CLLQXGELAEAESGLFLAQELIANXPEFXE  127 (148)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence            999999999999999999999988776543

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.47  E-value=1.3e-06  Score=72.79  Aligned_cols=98  Identities=10%  Similarity=0.024  Sum_probs=78.3

Q ss_pred             CChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHH
Q 037816          493 PRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI  570 (648)
Q Consensus       493 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  570 (648)
                      .+...+..+...+...|++++|...|++. ...| +...|..+..++...|++++|+..++++++..|.++.++..++.+
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~   86 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC   86 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence            35667777777778888888888877776 3333 467788888888888888888888888888888888888888888


Q ss_pred             HHhcCChHHHHHHHHHHHhC
Q 037816          571 YSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       571 ~~~~g~~~~A~~~~~~m~~~  590 (648)
                      |...|++++|+..+++..+.
T Consensus        87 ~~~~~~~~~A~~~~~~a~~~  106 (137)
T 3q49_B           87 QLEMESYDEAIANLQRAYSL  106 (137)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHH
Confidence            88888888888888888764

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.46  E-value=6.3e-07  Score=72.98  Aligned_cols=96  Identities=13%  Similarity=-0.002  Sum_probs=83.8

Q ss_pred             hHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHh
Q 037816          496 EHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSC  573 (648)
Q Consensus       496 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  573 (648)
                      ..+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++.+|.++.++..++.+|..
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~   97 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   97 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            34556777888999999999999988 4445 578888899999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHHhCC
Q 037816          574 SGRWKERAKAIKRMKEMG  591 (648)
Q Consensus       574 ~g~~~~A~~~~~~m~~~~  591 (648)
                      .|++++|+..+++..+..
T Consensus        98 ~g~~~~A~~~~~~al~~~  115 (121)
T 1hxi_A           98 EHNANAALASLRAWLLSQ  115 (121)
T ss_dssp             HHHHHHHHHHHHHHHC--
T ss_pred             cCCHHHHHHHHHHHHHhC
Confidence            999999999999987743

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.45  E-value=1.2e-06  Score=78.57  Aligned_cols=96  Identities=11%  Similarity=-0.046  Sum_probs=72.7

Q ss_pred             hHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHh
Q 037816          496 EHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSC  573 (648)
Q Consensus       496 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  573 (648)
                      ..+..+..+|.+.|++++|+..+++. ...| +...+..+..+|...|++++|+..++++++..|.++.++..++.++..
T Consensus        89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  168 (198)
T 2fbn_A           89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK  168 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence            56777788888888888888888877 3334 577888899999999999999999999999999999999999999999


Q ss_pred             cCChHHHH-HHHHHHHhCC
Q 037816          574 SGRWKERA-KAIKRMKEMG  591 (648)
Q Consensus       574 ~g~~~~A~-~~~~~m~~~~  591 (648)
                      .|+.+++. ..++.|...|
T Consensus       169 ~~~~~~~~~~~~~~~f~~~  187 (198)
T 2fbn_A          169 LKEARKKDKLTFGGMFDKG  187 (198)
T ss_dssp             HHHHHC-------------
T ss_pred             HHHHHHHHHHHHHHHhccc
Confidence            98888877 5666665544

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.44  E-value=1.5e-06  Score=76.31  Aligned_cols=127  Identities=10%  Similarity=0.059  Sum_probs=101.1

Q ss_pred             HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH-hhhcCCH--
Q 037816          435 ARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDM-VGRAGLL--  511 (648)
Q Consensus       435 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--  511 (648)
                      ...|++++|...+++..+.. +.+...+..+...+...|++++|...|+++.+.  .+.+...+..+..+ +...|++  
T Consensus        21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~   97 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMT   97 (177)
T ss_dssp             C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred             hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcch
Confidence            35678888999998888754 346778888889999999999999999999874  23467788888888 7788998  


Q ss_pred             HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccH
Q 037816          512 IEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPY  564 (648)
Q Consensus       512 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  564 (648)
                      ++|...++++ ...| +...+..+..++...|++++|+..++++++..|.++...
T Consensus        98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  152 (177)
T 2e2e_A           98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT  152 (177)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence            9999999887 4444 477788888999999999999999999999999986543

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.43  E-value=1.6e-06  Score=80.65  Aligned_cols=123  Identities=11%  Similarity=-0.066  Sum_probs=69.4

Q ss_pred             HHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHc
Q 037816          465 LLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDV----LVWQALLGACSIH  540 (648)
Q Consensus       465 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~~~~~l~~~~~~~  540 (648)
                      +...+...|++++|.+.|+.+...   .|+......+...+.+.|++++|+..|+.....|+.    ..+..+..++...
T Consensus       108 yA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~L  184 (282)
T 4f3v_A          108 FAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANL  184 (282)
T ss_dssp             HHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHC
Confidence            344455666666666666666431   232224444555666666666666666655222322    2455556666666


Q ss_pred             CChHHHHHHHHHHHhcC--CC-CCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816          541 GDSEMGKYAAEKLFLAQ--PD-SPAPYILMANIYSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       541 g~~~~A~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  590 (648)
                      |++++|+..|+++....  |. .+......+.++.+.|+.++|...|+++...
T Consensus       185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~  237 (282)
T 4f3v_A          185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT  237 (282)
T ss_dssp             TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            66666666666665332  22 2235556666666666666666666666553

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.42  E-value=2.9e-06  Score=68.26  Aligned_cols=108  Identities=12%  Similarity=0.027  Sum_probs=55.5

Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 037816          461 TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACS  538 (648)
Q Consensus       461 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~  538 (648)
                      .+..+...+...|++++|...+++....  .+.+...+..+...+...|++++|...+++. ...| +...+..+..++.
T Consensus         6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   83 (118)
T 1elw_A            6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE   83 (118)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            3444444455555555555555555442  1224444455555555555555555555544 2222 3445555555566


Q ss_pred             HcCChHHHHHHHHHHHhcCCCCCccHHHHHHH
Q 037816          539 IHGDSEMGKYAAEKLFLAQPDSPAPYILMANI  570 (648)
Q Consensus       539 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  570 (648)
                      ..|++++|...++++.+..|.++..+..++.+
T Consensus        84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  115 (118)
T 1elw_A           84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM  115 (118)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence            66666666666666666666655555444443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.42  E-value=2e-06  Score=69.19  Aligned_cols=98  Identities=13%  Similarity=0.095  Sum_probs=88.0

Q ss_pred             ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHH
Q 037816          494 RAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIY  571 (648)
Q Consensus       494 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  571 (648)
                      +...+..+...+...|++++|.+.+++. ...| +...+..+..++...|++++|...++++++..|.++.++..++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            3456778888999999999999999988 3344 6788888999999999999999999999999999999999999999


Q ss_pred             HhcCChHHHHHHHHHHHhCC
Q 037816          572 SCSGRWKERAKAIKRMKEMG  591 (648)
Q Consensus       572 ~~~g~~~~A~~~~~~m~~~~  591 (648)
                      ...|++++|.+.+++..+..
T Consensus        83 ~~~~~~~~A~~~~~~~~~~~  102 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLKHE  102 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHhhHHHHHHHHHHHHHcC
Confidence            99999999999999998753

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.42  E-value=6.3e-07  Score=75.14  Aligned_cols=91  Identities=19%  Similarity=0.065  Sum_probs=70.3

Q ss_pred             HHHHHhhhcCCHHHHHHHHHhC-CCCCC-------------HHHHHHHHHHHHHcCChHHHHHHHHHHHhc-------CC
Q 037816          500 CVVDMVGRAGLLIEARSFIERM-PVKPD-------------VLVWQALLGACSIHGDSEMGKYAAEKLFLA-------QP  558 (648)
Q Consensus       500 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~p  558 (648)
                      .....+.+.|++++|++.|++. .+.|+             ...|..+..++.+.|++++|+..++++++.       +|
T Consensus        16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p   95 (159)
T 2hr2_A           16 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ   95 (159)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC
Confidence            3344455555555555555544 22222             337888888999999999999999999999       99


Q ss_pred             CCCccH----HHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816          559 DSPAPY----ILMANIYSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       559 ~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~  590 (648)
                      ++...|    ...+.++...|++++|+..|++..+.
T Consensus        96 d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel  131 (159)
T 2hr2_A           96 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM  131 (159)
T ss_dssp             THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            999999    99999999999999999999998773

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.41  E-value=2.6e-06  Score=71.97  Aligned_cols=96  Identities=9%  Similarity=0.000  Sum_probs=57.6

Q ss_pred             ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHH
Q 037816          494 RAEHYACVVDMVGRAGLLIEARSFIERM-PVKPD----VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMA  568 (648)
Q Consensus       494 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~  568 (648)
                      +...+..+...+...|++++|.+.|++. ...|+    ...+..+..+|...|++++|+..++++++..|.++.++..++
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a  106 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS  106 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence            3444555555555666666666666555 44444    345555555666666666666666666666666666666666


Q ss_pred             HHHHhcCChHHHHHHHHHHHh
Q 037816          569 NIYSCSGRWKERAKAIKRMKE  589 (648)
Q Consensus       569 ~~~~~~g~~~~A~~~~~~m~~  589 (648)
                      .++...|++++|.+.+++..+
T Consensus       107 ~~~~~~~~~~~A~~~~~~al~  127 (148)
T 2dba_A          107 QALEKLGRLDQAVLDLQRCVS  127 (148)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHH
Confidence            666666666666666666654

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.40  E-value=1.8e-06  Score=71.34  Aligned_cols=98  Identities=9%  Similarity=0.026  Sum_probs=89.7

Q ss_pred             CChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHH
Q 037816          493 PRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI  570 (648)
Q Consensus       493 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  570 (648)
                      .+...+..+...+...|++++|.+.+++. ...| +...+..+..++...|++++|+..++++++..|.++.++..++.+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~   93 (133)
T 2lni_A           14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA   93 (133)
T ss_dssp             CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence            36778888999999999999999999988 5555 678889999999999999999999999999999999999999999


Q ss_pred             HHhcCChHHHHHHHHHHHhC
Q 037816          571 YSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       571 ~~~~g~~~~A~~~~~~m~~~  590 (648)
                      +...|++++|++.+++..+.
T Consensus        94 ~~~~~~~~~A~~~~~~~~~~  113 (133)
T 2lni_A           94 LEAMKDYTKAMDVYQKALDL  113 (133)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHh
Confidence            99999999999999998774

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.40  E-value=2e-06  Score=69.99  Aligned_cols=96  Identities=18%  Similarity=0.244  Sum_probs=87.4

Q ss_pred             hhHHHHHHHHhhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHH
Q 037816          495 AEHYACVVDMVGRAGLLIEARSFIERM-PVK-PDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYS  572 (648)
Q Consensus       495 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  572 (648)
                      ...+..+...+...|++++|.+.++++ ... .+...+..+...+...|++++|+..++++.+..|.++.++..++.++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   88 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            567888999999999999999999988 333 457888899999999999999999999999999999999999999999


Q ss_pred             hcCChHHHHHHHHHHHhC
Q 037816          573 CSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       573 ~~g~~~~A~~~~~~m~~~  590 (648)
                      ..|++++|.++++++.+.
T Consensus        89 ~~~~~~~A~~~~~~~~~~  106 (125)
T 1na0_A           89 KQGDYDEAIEYYQKALEL  106 (125)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHh
Confidence            999999999999999774

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.39  E-value=3e-06  Score=78.81  Aligned_cols=135  Identities=15%  Similarity=0.047  Sum_probs=96.5

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHh
Q 037816          428 NSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP--RAEHYACVVDMV  505 (648)
Q Consensus       428 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~  505 (648)
                      -.+...+...|++++|.++|+.+...+  |+......+...+.+.+++++|+..|+..... . .|  ....+..+..++
T Consensus       106 LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al  181 (282)
T 4f3v_A          106 MGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAA  181 (282)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHH
Confidence            345566777888888888887777644  65445555555678888888888888765431 1 12  134677788888


Q ss_pred             hhcCCHHHHHHHHHhC--CCC-CC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHH
Q 037816          506 GRAGLLIEARSFIERM--PVK-PD--VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILM  567 (648)
Q Consensus       506 ~~~g~~~~A~~~~~~~--~~~-p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l  567 (648)
                      ...|++++|++.|++.  +.. |.  ...+.....++.+.|+.++|...|+++...+|. +.+...|
T Consensus       182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL  247 (282)
T 4f3v_A          182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL  247 (282)
T ss_dssp             HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence            8999999999998887  211 43  345667777888999999999999999999987 5555444

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.39  E-value=2.7e-06  Score=76.46  Aligned_cols=152  Identities=11%  Similarity=-0.028  Sum_probs=91.5

Q ss_pred             hCCCHHHHHH---HHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhccCcHH
Q 037816          405 KCGDLEDSIK---VFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE----GVEP-TDVTFLSLLHACSHVGLVN  476 (648)
Q Consensus       405 ~~g~~~~A~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~g~~~  476 (648)
                      ..|++++|.+   .+..-.......+..+...+...|++++|...+++..+.    +..| ...++..+...+...|+++
T Consensus         4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~   83 (203)
T 3gw4_A            4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD   83 (203)
T ss_dssp             ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence            4566666666   443322234455666666677777777777777666541    1112 2345666666777777777


Q ss_pred             HHHHHHHHhHHhcCCCC-----ChhHHHHHHHHhhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCCh
Q 037816          477 KGMEFLKSMTEVHRISP-----RAEHYACVVDMVGRAGLLIEARSFIERM----PVKPD----VLVWQALLGACSIHGDS  543 (648)
Q Consensus       477 ~A~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~~  543 (648)
                      +|...+++..+...-.+     ....+..+...+...|++++|.+.+++.    ...++    ..++..+...+...|++
T Consensus        84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~  163 (203)
T 3gw4_A           84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL  163 (203)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence            77777777655311111     2345666777777788888877777665    11122    23356677778888888


Q ss_pred             HHHHHHHHHHHhc
Q 037816          544 EMGKYAAEKLFLA  556 (648)
Q Consensus       544 ~~A~~~~~~~~~~  556 (648)
                      ++|...++++++.
T Consensus       164 ~~A~~~~~~al~~  176 (203)
T 3gw4_A          164 LEAQQHWLRARDI  176 (203)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            8888888887654

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.38  E-value=5.7e-06  Score=71.39  Aligned_cols=128  Identities=11%  Similarity=-0.050  Sum_probs=94.8

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 037816          425 VSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDM  504 (648)
Q Consensus       425 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~  504 (648)
                      ..+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.  .+.+...+..+...
T Consensus        14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~   90 (166)
T 1a17_A           14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS   90 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence            355667777788888888888888887754 336777778888888888888888888888774  33467778888888


Q ss_pred             hhhcCCHHHHHHHHHhC-CCCC-CHHHHHH--HHHHHHHcCChHHHHHHHHHHHh
Q 037816          505 VGRAGLLIEARSFIERM-PVKP-DVLVWQA--LLGACSIHGDSEMGKYAAEKLFL  555 (648)
Q Consensus       505 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~  555 (648)
                      +...|++++|.+.+++. ...| +...+..  .+..+...|++++|+..+++...
T Consensus        91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A           91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence            88889999998888887 3333 3444433  33346778889999888887654

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.35  E-value=3.2e-06  Score=69.27  Aligned_cols=110  Identities=8%  Similarity=-0.116  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 037816          460 VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGAC  537 (648)
Q Consensus       460 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~  537 (648)
                      ..+..+...+...|++++|...|++..+.  .+.+...|..+..+|.+.|++++|+..+++. ...| +...|..+..++
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   82 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ   82 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            34555666677777777777777777663  2335677777777777778888887777776 3344 466778888888


Q ss_pred             HHcCChHHHHHHHHHHHhcC------CCCCccHHHHHHHH
Q 037816          538 SIHGDSEMGKYAAEKLFLAQ------PDSPAPYILMANIY  571 (648)
Q Consensus       538 ~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~  571 (648)
                      ...|++++|+..++++++..      |.+..+...+..+.
T Consensus        83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~  122 (126)
T 3upv_A           83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS  122 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence            88888888888888888888      77766666665544

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.35  E-value=2.4e-06  Score=71.85  Aligned_cols=108  Identities=11%  Similarity=-0.041  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 037816          460 VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGAC  537 (648)
Q Consensus       460 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~  537 (648)
                      ..+..+...+...|++++|...|+++...  -+.+...|..+..+|.+.|++++|+..|++. ...| ++..+..+..++
T Consensus        19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   96 (142)
T 2xcb_A           19 EQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH   96 (142)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence            34555566677778888888888887763  2336777777888888888888888888777 3334 456677788888


Q ss_pred             HHcCChHHHHHHHHHHHhcCCCCCccHHHHHH
Q 037816          538 SIHGDSEMGKYAAEKLFLAQPDSPAPYILMAN  569 (648)
Q Consensus       538 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~  569 (648)
                      ...|++++|+..++++++..|.++........
T Consensus        97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~  128 (142)
T 2xcb_A           97 LQLGDLDGAESGFYSARALAAAQPAHEALAAR  128 (142)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCcchHHHHHH
Confidence            99999999999999999988887766554433

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.33  E-value=5.4e-06  Score=71.63  Aligned_cols=94  Identities=16%  Similarity=-0.024  Sum_probs=50.5

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 037816          425 VSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDM  504 (648)
Q Consensus       425 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~  504 (648)
                      ..|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|+..+++..+.  .+.+...|..+..+
T Consensus        12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~   88 (164)
T 3sz7_A           12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLGLA   88 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence            344555555555555555555555555532 224445555555555555555555555555542  12245555555555


Q ss_pred             hhhcCCHHHHHHHHHhC
Q 037816          505 VGRAGLLIEARSFIERM  521 (648)
Q Consensus       505 ~~~~g~~~~A~~~~~~~  521 (648)
                      |...|++++|.+.|++.
T Consensus        89 ~~~~g~~~~A~~~~~~a  105 (164)
T 3sz7_A           89 RFDMADYKGAKEAYEKG  105 (164)
T ss_dssp             HHHTTCHHHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHH
Confidence            55555555555555554

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.32  E-value=4.1e-06  Score=68.77  Aligned_cols=97  Identities=16%  Similarity=0.126  Sum_probs=88.1

Q ss_pred             ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHH
Q 037816          494 RAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIY  571 (648)
Q Consensus       494 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  571 (648)
                      +...+..+...+...|++++|.+.+++. ...| +...+..+..++...|++++|+..++++++..|.++.++..++.++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   90 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL   90 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence            5667888899999999999999999987 3334 6788889999999999999999999999999999999999999999


Q ss_pred             HhcCChHHHHHHHHHHHhC
Q 037816          572 SCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       572 ~~~g~~~~A~~~~~~m~~~  590 (648)
                      ...|++++|.+.+++..+.
T Consensus        91 ~~~~~~~~A~~~~~~~~~~  109 (131)
T 2vyi_A           91 SSLNKHVEAVAYYKKALEL  109 (131)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHhc
Confidence            9999999999999999875

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.31  E-value=7.3e-05  Score=71.99  Aligned_cols=32  Identities=16%  Similarity=0.261  Sum_probs=24.4

Q ss_pred             CCCCccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037816          558 PDSPAPYILMANIYSCSGRWKERAKAIKRMKE  589 (648)
Q Consensus       558 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  589 (648)
                      +.++.+...++++|...|+.++|.++++.+.+
T Consensus       299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~  330 (349)
T 3q7a_A          299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLSS  330 (349)
T ss_dssp             SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence            45556777888888888888888888888754

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.31  E-value=0.00029  Score=67.86  Aligned_cols=231  Identities=11%  Similarity=0.025  Sum_probs=159.1

Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccC-ChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhC-C-CHH
Q 037816          334 AQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDT-SLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKC-G-DLE  410 (648)
Q Consensus       334 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~~  410 (648)
                      .+.+..++|+++++++.... +-+...++.--..+...+ .++++..+++.+.... +.+..+|+.-...+.+. + +++
T Consensus        65 ~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~  142 (349)
T 3q7a_A           65 AKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPV  142 (349)
T ss_dssp             HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCH
T ss_pred             HhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChH
Confidence            33445567888888887764 223444555445555566 4888888888888665 56666777666666665 6 788


Q ss_pred             HHHHHHhhcCC---CChhHHHHHHHHHHHcCChH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc-----
Q 037816          411 DSIKVFSRMAP---RNSVSWNSMIAAFARHGNGF--------KALELYEEMKLEGVEPTDVTFLSLLHACSHVGL-----  474 (648)
Q Consensus       411 ~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--------~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~-----  474 (648)
                      +++++++.+.+   +|..+|+.-.-.+.+.|.++        ++++.++++.+.. .-|...|+.....+.+.+.     
T Consensus       143 ~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~  221 (349)
T 3q7a_A          143 SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSS  221 (349)
T ss_dssp             HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccch
Confidence            99999988874   35666766555555555555        8999999999875 3477788887777777765     


Q ss_pred             --HHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCH--------------------HHHHHHHHhC-CC-------C
Q 037816          475 --VNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLL--------------------IEARSFIERM-PV-------K  524 (648)
Q Consensus       475 --~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~-~~-------~  524 (648)
                        ++++++.++++...  .+-|...|+.+-..+.+.|+.                    .+..++..++ +.       .
T Consensus       222 ~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (349)
T 3q7a_A          222 RSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPL  299 (349)
T ss_dssp             HHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCS
T ss_pred             HHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCC
Confidence              78899999988874  344778888777777776653                    4455555555 22       2


Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHHHH-hcCCCCCccHHHHHH
Q 037816          525 PDVLVWQALLGACSIHGDSEMGKYAAEKLF-LAQPDSPAPYILMAN  569 (648)
Q Consensus       525 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~~l~~  569 (648)
                      +.+..+..|+..|...|+.++|.++++.+. +.+|-....+...+.
T Consensus       300 ~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~  345 (349)
T 3q7a_A          300 PVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR  345 (349)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence            568888999999999999999999999997 567765555544433

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.31  E-value=4.2e-06  Score=72.18  Aligned_cols=64  Identities=8%  Similarity=0.074  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816          527 VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       527 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  590 (648)
                      ...|..+..+|.+.|++++|+..++++++.+|.++.+|..++.+|...|++++|+..+++..+.
T Consensus        63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            4567778888888999999999999999999998889999999999999999999999888774

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.30  E-value=7.6e-06  Score=77.90  Aligned_cols=189  Identities=10%  Similarity=-0.062  Sum_probs=118.1

Q ss_pred             HHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC---CChhHHHHHHHHH
Q 037816          358 PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP---RNSVSWNSMIAAF  434 (648)
Q Consensus       358 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~  434 (648)
                      ...+..+...+...|++++|...++.+.+.. +.+...+..+..+|.+.|++++|...+++..+   .+...+..+..+|
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   82 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            3445555555666666666666666666553 44667777888888888888888888887653   3567888888899


Q ss_pred             HHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHH
Q 037816          435 ARHGNGFKALELYEEMKLEGVEPTD-VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIE  513 (648)
Q Consensus       435 ~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  513 (648)
                      ...|++++|+..|++..+.+  |+. ..+...+....+   ...+... ...... ..+.+......+...+  .|+.++
T Consensus        83 ~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~-~~~~~~~i~~~l~~l~--~~~~~~  153 (281)
T 2c2l_A           83 LEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKKRW-NSIEER-RIHQESELHSYLTRLI--AAERER  153 (281)
T ss_dssp             HHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHHHH-HHHHHT-CCCCCCHHHHHHHHHH--HHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHHHH-HHHHHH-HHhhhHHHHHHHHHHH--HHHHHH
Confidence            99999999999998887643  311 111111111111   1111121 222222 4455665555554433  689999


Q ss_pred             HHHHHHhC-CCCCCHHHHHH-HHHHHHHc-CChHHHHHHHHHHHhc
Q 037816          514 ARSFIERM-PVKPDVLVWQA-LLGACSIH-GDSEMGKYAAEKLFLA  556 (648)
Q Consensus       514 A~~~~~~~-~~~p~~~~~~~-l~~~~~~~-g~~~~A~~~~~~~~~~  556 (648)
                      |.+.+++. ...|+...... +...+.+. +.+++|.++|+++.+.
T Consensus       154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~  199 (281)
T 2c2l_A          154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK  199 (281)
T ss_dssp             HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred             HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            99988887 66776544433 33334444 6788899999888753

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.28  E-value=1.1e-05  Score=67.92  Aligned_cols=113  Identities=9%  Similarity=-0.084  Sum_probs=81.1

Q ss_pred             CHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 037816          458 TDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR----AEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQ  531 (648)
Q Consensus       458 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~  531 (648)
                      +...+..+...+...|++++|...|++..+   ..|+    ...+..+...|...|++++|.+.+++. ...| +...+.
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  103 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY  103 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence            445566666666677777777777776654   2343    566667777777777777777777766 3333 467778


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHh
Q 037816          532 ALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSC  573 (648)
Q Consensus       532 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  573 (648)
                      .+..++...|++++|...++++++..|.+..++..+..+...
T Consensus       104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  145 (148)
T 2dba_A          104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP  145 (148)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence            888888999999999999999999999887777776665443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.28  E-value=2.4e-06  Score=70.33  Aligned_cols=90  Identities=11%  Similarity=0.072  Sum_probs=55.2

Q ss_pred             HHHHhhhcCCHHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---CccHHHHHHHHH
Q 037816          501 VVDMVGRAGLLIEARSFIERM-PVKPD-V---LVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS---PAPYILMANIYS  572 (648)
Q Consensus       501 l~~~~~~~g~~~~A~~~~~~~-~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~  572 (648)
                      +...+...|++++|.+.|+++ ...|+ .   ..+..+..++...|++++|+..++++++..|++   +.++..++.++.
T Consensus         8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~   87 (129)
T 2xev_A            8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY   87 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence            444555566666666666555 22222 1   355556666666677777777777776666666   455666666777


Q ss_pred             hcCChHHHHHHHHHHHhC
Q 037816          573 CSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       573 ~~g~~~~A~~~~~~m~~~  590 (648)
                      ..|++++|...++++.+.
T Consensus        88 ~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           88 GEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHH
Confidence            777777777777666553

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.27  E-value=5.7e-06  Score=68.83  Aligned_cols=101  Identities=7%  Similarity=-0.156  Sum_probs=76.5

Q ss_pred             CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 037816          457 PTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALL  534 (648)
Q Consensus       457 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~  534 (648)
                      .+...+..+...+...|++++|...|++....  .+.+...+..+..+|...|++++|...+++. ...| +...+..+.
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~   84 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG   84 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence            35666777777777888888888888877763  2335677777788888888888888888776 3334 467788888


Q ss_pred             HHHHHcCChHHHHHHHHHHHhcCCC
Q 037816          535 GACSIHGDSEMGKYAAEKLFLAQPD  559 (648)
Q Consensus       535 ~~~~~~g~~~~A~~~~~~~~~~~p~  559 (648)
                      .++...|++++|+..++++++..|+
T Consensus        85 ~~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           85 QCQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHChh
Confidence            8888889999999999988888776

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.24  E-value=1.9e-06  Score=77.33  Aligned_cols=96  Identities=9%  Similarity=-0.059  Sum_probs=78.5

Q ss_pred             hhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-----------------HHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 037816          495 AEHYACVVDMVGRAGLLIEARSFIERM-PVKPD-----------------VLVWQALLGACSIHGDSEMGKYAAEKLFLA  556 (648)
Q Consensus       495 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  556 (648)
                      ...+..+...+.+.|++++|.+.|++. ...|+                 ...+..+..+|...|++++|+..++++++.
T Consensus        38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  117 (198)
T 2fbn_A           38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI  117 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            344555666666777777777777665 22221                 267888889999999999999999999999


Q ss_pred             CCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816          557 QPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       557 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  590 (648)
                      .|.++.++..++.+|...|++++|++.+++..+.
T Consensus       118 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  151 (198)
T 2fbn_A          118 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL  151 (198)
T ss_dssp             STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999774

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.22  E-value=0.00024  Score=68.08  Aligned_cols=177  Identities=11%  Similarity=0.077  Sum_probs=93.5

Q ss_pred             HHHHHHHhhcC---CCChhHHHHHHHHHHHcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCc-HHHHHHHHH
Q 037816          410 EDSIKVFSRMA---PRNSVSWNSMIAAFARHG--NGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGL-VNKGMEFLK  483 (648)
Q Consensus       410 ~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~-~~~A~~~~~  483 (648)
                      ++++.+++.+.   +.+..+|+.-.-.+.+.+  .+++++.+++++.+.. +-|...|+.-...+...|. ++++++.++
T Consensus        91 ~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~  169 (331)
T 3dss_A           91 KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTD  169 (331)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence            34444444432   234444544444444444  2555666666655543 2244444444444444444 455556655


Q ss_pred             HhHHhcCCCCChhHHHHHHHHhhhc--------------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc-------
Q 037816          484 SMTEVHRISPRAEHYACVVDMVGRA--------------GLLIEARSFIERM-PVKP-DVLVWQALLGACSIH-------  540 (648)
Q Consensus       484 ~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~-------  540 (648)
                      ++.+.  .+-|...|+.....+.+.              +.++++++.+++. ...| |...|+.+-..+.+.       
T Consensus       170 ~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~  247 (331)
T 3dss_A          170 SLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELS  247 (331)
T ss_dssp             HHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCC
T ss_pred             HHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccc
Confidence            55553  222444444444443333              3355666666555 2233 344555444443333       


Q ss_pred             ----CChHHHHHHHHHHHhcCCCCCccHHHHHHH---HHhcCChHHHHHHHHHHHh
Q 037816          541 ----GDSEMGKYAAEKLFLAQPDSPAPYILMANI---YSCSGRWKERAKAIKRMKE  589 (648)
Q Consensus       541 ----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~---~~~~g~~~~A~~~~~~m~~  589 (648)
                          +.++++++.++++++..|++..++..++..   ....|..++...++.++.+
T Consensus       248 ~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~  303 (331)
T 3dss_A          248 VEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA  303 (331)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence                357788888888888888876555444432   2245777788888888876

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.20  E-value=4.9e-06  Score=68.35  Aligned_cols=96  Identities=10%  Similarity=0.038  Sum_probs=78.3

Q ss_pred             hhHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-------CccHH
Q 037816          495 AEHYACVVDMVGRAGLLIEARSFIERM-PV-KPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS-------PAPYI  565 (648)
Q Consensus       495 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~  565 (648)
                      ...+..+...+...|++++|...+++. .. +.+...+..+...+...|++++|+..++++++..|.+       ..++.
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            345666777788888888888888776 22 3357778888888999999999999999998887765       67888


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhC
Q 037816          566 LMANIYSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       566 ~l~~~~~~~g~~~~A~~~~~~m~~~  590 (648)
                      .++.++...|++++|.+.+++..+.
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~~~~  108 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKSLAE  108 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHh
Confidence            9999999999999999999998774

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.20  E-value=1.2e-06  Score=70.80  Aligned_cols=82  Identities=13%  Similarity=0.152  Sum_probs=48.9

Q ss_pred             cCCHHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHH
Q 037816          508 AGLLIEARSFIERM-PV---KP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAK  582 (648)
Q Consensus       508 ~g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~  582 (648)
                      .|++++|+..|++. ..   .| +...+..+..+|...|++++|+..++++++..|+++.++..++.++...|++++|++
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~   82 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE   82 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence            35555566665555 33   13 234455666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHh
Q 037816          583 AIKRMKE  589 (648)
Q Consensus       583 ~~~~m~~  589 (648)
                      .+++..+
T Consensus        83 ~~~~al~   89 (117)
T 3k9i_A           83 LLLKIIA   89 (117)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6666655

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.19  E-value=6.9e-06  Score=65.25  Aligned_cols=100  Identities=11%  Similarity=0.040  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHH
Q 037816          460 VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP---DVLVWQALLG  535 (648)
Q Consensus       460 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~  535 (648)
                      ..+..+...+...|++++|...++++.+.  .+.+...+..+...+...|++++|.+.+++. ...|   +...+..+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~   84 (112)
T 2kck_A            7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD   84 (112)
T ss_dssp             TGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence            34445555666666666666666666653  2234556666666777777777777777665 3333   4666777777


Q ss_pred             HHHHc-CChHHHHHHHHHHHhcCCCCC
Q 037816          536 ACSIH-GDSEMGKYAAEKLFLAQPDSP  561 (648)
Q Consensus       536 ~~~~~-g~~~~A~~~~~~~~~~~p~~~  561 (648)
                      ++... |++++|++.++++....|.++
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           85 ALRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence            77778 888888888888887777654

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.18  E-value=1.7e-05  Score=65.12  Aligned_cols=103  Identities=10%  Similarity=0.001  Sum_probs=70.9

Q ss_pred             HHHHHhccCcHHHHHHHHHHhHHhcCCCCCh---hHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHH
Q 037816          465 LLHACSHVGLVNKGMEFLKSMTEVHRISPRA---EHYACVVDMVGRAGLLIEARSFIERM-PVKPD----VLVWQALLGA  536 (648)
Q Consensus       465 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~  536 (648)
                      +...+...|++++|...|+++.+.  .+.+.   ..+..+..+|.+.|++++|...|++. ...|+    ...+..+..+
T Consensus         8 ~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~   85 (129)
T 2xev_A            8 VAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS   85 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence            445566677777777777777663  12223   46666777777777777777777776 22333    5567777888


Q ss_pred             HHHcCChHHHHHHHHHHHhcCCCCCccHHHHHH
Q 037816          537 CSIHGDSEMGKYAAEKLFLAQPDSPAPYILMAN  569 (648)
Q Consensus       537 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~  569 (648)
                      +...|++++|+..++++++..|+++.+......
T Consensus        86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~  118 (129)
T 2xev_A           86 QYGEGKNTEAQQTLQQVATQYPGSDAARVAQER  118 (129)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence            888899999999999998888887655444433

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.18  E-value=3.9e-06  Score=86.47  Aligned_cols=117  Identities=9%  Similarity=-0.032  Sum_probs=90.1

Q ss_pred             HHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChH
Q 037816          467 HACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSE  544 (648)
Q Consensus       467 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~  544 (648)
                      ..+.+.|++++|.+.++++.+.  .+.+...+..+..+|.+.|++++|++.+++. ...| +...|..+..+|...|+++
T Consensus        14 ~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~   91 (477)
T 1wao_1           14 NDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR   91 (477)
T ss_dssp             SSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence            3456778888888888888763  2335777888888888888888888888877 4444 4677888888899999999


Q ss_pred             HHHHHHHHHHhcCCCCCccHHHHHHH--HHhcCChHHHHHHHH
Q 037816          545 MGKYAAEKLFLAQPDSPAPYILMANI--YSCSGRWKERAKAIK  585 (648)
Q Consensus       545 ~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~  585 (648)
                      +|++.++++++..|.+..++..++.+  +.+.|++++|++.++
T Consensus        92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            99999999999999988888888887  788899999998887

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.17  E-value=1.1e-05  Score=69.05  Aligned_cols=128  Identities=12%  Similarity=0.035  Sum_probs=75.3

Q ss_pred             HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHhhhcCCHHHHHHHHHhC----CCCCC----HHH
Q 037816          462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPR----AEHYACVVDMVGRAGLLIEARSFIERM----PVKPD----VLV  529 (648)
Q Consensus       462 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~  529 (648)
                      +..+...+...|++++|...+++..+...-.++    ..++..+...|...|++++|.+.+++.    ...++    ...
T Consensus        12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~   91 (164)
T 3ro3_A           12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS   91 (164)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence            334444444555555555555544432100011    124455555566666666666655554    10111    345


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhcCCC------CCccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037816          530 WQALLGACSIHGDSEMGKYAAEKLFLAQPD------SPAPYILMANIYSCSGRWKERAKAIKRMKE  589 (648)
Q Consensus       530 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  589 (648)
                      +..+...+...|++++|+..++++++..+.      ...++..++.++...|++++|.+.+++..+
T Consensus        92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A           92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            666677778888888888888887754321      235677888888899999999988888765

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.17  E-value=1.9e-05  Score=81.02  Aligned_cols=95  Identities=12%  Similarity=0.024  Sum_probs=76.7

Q ss_pred             hhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHH
Q 037816          495 AEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYS  572 (648)
Q Consensus       495 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  572 (648)
                      ...|..+..+|.+.|++++|+..++++ .+.| +...|..+..+|...|++++|+..|+++++++|.+..++..++.++.
T Consensus       317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~  396 (457)
T 1kt0_A          317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK  396 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            467778888888999999999988887 3344 57788899999999999999999999999999999999999999999


Q ss_pred             hcCChHHHHH-HHHHHHh
Q 037816          573 CSGRWKERAK-AIKRMKE  589 (648)
Q Consensus       573 ~~g~~~~A~~-~~~~m~~  589 (648)
                      +.|+++++.. .+++|..
T Consensus       397 ~~~~~~~a~~~~~~~~f~  414 (457)
T 1kt0_A          397 KAKEHNERDRRIYANMFK  414 (457)
T ss_dssp             HHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            9999998874 4565544

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.17  E-value=1.4e-05  Score=65.47  Aligned_cols=107  Identities=8%  Similarity=-0.017  Sum_probs=60.3

Q ss_pred             HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CC----CCC----HHHHHH
Q 037816          462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PV----KPD----VLVWQA  532 (648)
Q Consensus       462 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~~~  532 (648)
                      +..+...+...|++++|...+++..+.  .+.+...+..+...|...|++++|...+++. ..    .++    ..++..
T Consensus         7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (131)
T 1elr_A            7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence            344444455555555555555555442  1224445555555555555555555555554 11    122    455666


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHH
Q 037816          533 LLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIY  571 (648)
Q Consensus       533 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  571 (648)
                      +..++...|++++|...++++++..| ++.....+..+.
T Consensus        85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~  122 (131)
T 1elr_A           85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE  122 (131)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence            77777777888888888888777776 455555554443

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.16  E-value=1.9e-05  Score=80.49  Aligned_cols=164  Identities=9%  Similarity=-0.104  Sum_probs=115.5

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHH----HHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCC-Chh
Q 037816          426 SWNSMIAAFARHGNGFKALELYEEMKLEG-VEPTDV----TFLSLLHACSHVGLVNKGMEFLKSMTEVH---RISP-RAE  496 (648)
Q Consensus       426 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~----~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~~-~~~  496 (648)
                      .+..+...|...|++++|.+.+.++.+.- ..++..    ..+.+-..+...|+++.|..+++......   +..+ ...
T Consensus        57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  136 (434)
T 4b4t_Q           57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS  136 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence            35667888888888888888888776521 112221    22333344456788999998888775421   2222 355


Q ss_pred             HHHHHHHHhhhcCCHHHHHHHHHhC-----C--CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---CCC----C
Q 037816          497 HYACVVDMVGRAGLLIEARSFIERM-----P--VKPD-VLVWQALLGACSIHGDSEMGKYAAEKLFLAQ---PDS----P  561 (648)
Q Consensus       497 ~~~~l~~~~~~~g~~~~A~~~~~~~-----~--~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---p~~----~  561 (648)
                      ++..+...|...|++++|..++++.     +  .+|. ..++..++..|...|++++|..+++++....   +.+    .
T Consensus       137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  216 (434)
T 4b4t_Q          137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA  216 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred             HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence            7788899999999999999998876     1  1222 4567888889999999999999999987543   222    2


Q ss_pred             ccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037816          562 APYILMANIYSCSGRWKERAKAIKRMKE  589 (648)
Q Consensus       562 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~  589 (648)
                      ..+..++..+...|++++|...+.+..+
T Consensus       217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          217 ELDLMSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             HHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            4566777888889999999988877754

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.14  E-value=7.7e-06  Score=66.39  Aligned_cols=97  Identities=11%  Similarity=0.044  Sum_probs=62.7

Q ss_pred             HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc
Q 037816          463 LSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIH  540 (648)
Q Consensus       463 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~  540 (648)
                      ..+...+.+.|++++|...++++.+.  -+.+...+..+..++...|++++|+..|++. ...| +...+..+..++...
T Consensus        21 ~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           21 MEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            33445566677777777777777663  2336666677777777777777777777766 4444 456677777778888


Q ss_pred             CChHHHHHHHHHHHhcCCCCC
Q 037816          541 GDSEMGKYAAEKLFLAQPDSP  561 (648)
Q Consensus       541 g~~~~A~~~~~~~~~~~p~~~  561 (648)
                      |++++|+..++++++.+|.+.
T Consensus        99 g~~~~A~~~~~~al~~~P~~~  119 (121)
T 1hxi_A           99 HNANAALASLRAWLLSQPQYE  119 (121)
T ss_dssp             HHHHHHHHHHHHHHC------
T ss_pred             CCHHHHHHHHHHHHHhCcCCC
Confidence            888888888888887777653

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.14  E-value=0.00042  Score=66.40  Aligned_cols=193  Identities=9%  Similarity=0.017  Sum_probs=128.9

Q ss_pred             hhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC--CHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCC-hHHHHHHH
Q 037816          374 LGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCG--DLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGN-GFKALELY  447 (648)
Q Consensus       374 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~-~~~A~~~~  447 (648)
                      ++.+..+++.+.... |-+..+|+.-.-++.+.|  .+++++.+++.+.   +.|..+|+.-.-.+...|. ++++++.+
T Consensus        90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~  168 (331)
T 3dss_A           90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT  168 (331)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence            455666666666544 456666666655666666  3778888877765   4466777777667777777 58888888


Q ss_pred             HHHHHcCCCCCHHHHHHHHHHHhcc--------------CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhc-----
Q 037816          448 EEMKLEGVEPTDVTFLSLLHACSHV--------------GLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA-----  508 (648)
Q Consensus       448 ~~m~~~~~~p~~~~~~~ll~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----  508 (648)
                      +++.+.. +-|...|+.....+...              +.++++++.++.....  .+-|...|+.+-..+.+.     
T Consensus       169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~  245 (331)
T 3dss_A          169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCE  245 (331)
T ss_dssp             HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGG
T ss_pred             HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccc
Confidence            8888865 33666666555444333              4578888888888764  233677776665555554     


Q ss_pred             ------CCHHHHHHHHHhC-CCCCCHHHHHHHHHHH-----HHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHH
Q 037816          509 ------GLLIEARSFIERM-PVKPDVLVWQALLGAC-----SIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIY  571 (648)
Q Consensus       509 ------g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  571 (648)
                            +.++++++.++++ ...||. .|..+..+.     ...|..++....+.++.+++|....-|..+...+
T Consensus       246 ~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~  319 (331)
T 3dss_A          246 LSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF  319 (331)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence                  4578888888888 556664 343322222     2357788999999999999999877777665544

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.10  E-value=1.6e-05  Score=78.71  Aligned_cols=90  Identities=9%  Similarity=-0.080  Sum_probs=80.0

Q ss_pred             ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHH
Q 037816          494 RAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIY  571 (648)
Q Consensus       494 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  571 (648)
                      +..+|..+..+|.+.|++++|++.+++. ...| +...|..+..+|...|++++|+..++++++..|.+..++..+..++
T Consensus       272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~  351 (370)
T 1ihg_A          272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK  351 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            5677888999999999999999999988 5556 4778888999999999999999999999999999999999999999


Q ss_pred             HhcCChHHHHHH
Q 037816          572 SCSGRWKERAKA  583 (648)
Q Consensus       572 ~~~g~~~~A~~~  583 (648)
                      ...++.+++.+.
T Consensus       352 ~~~~~~~~a~k~  363 (370)
T 1ihg_A          352 QKIKAQKDKEKA  363 (370)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHH
Confidence            999988887653

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.09  E-value=3.8e-05  Score=75.10  Aligned_cols=129  Identities=12%  Similarity=-0.009  Sum_probs=99.6

Q ss_pred             ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHhccCcHHHHHHHHHHhH
Q 037816          423 NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPT----------------DVTFLSLLHACSHVGLVNKGMEFLKSMT  486 (648)
Q Consensus       423 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~----------------~~~~~~ll~~~~~~g~~~~A~~~~~~~~  486 (648)
                      +...+..+...|.+.|++++|+..|++..+..  |+                ...|..+..++.+.|++++|+..++++.
T Consensus       146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al  223 (336)
T 1p5q_A          146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL  223 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34566677777888888888888888887754  33                4778888888889999999999999988


Q ss_pred             HhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHH-HHHHHHHHh
Q 037816          487 EVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMG-KYAAEKLFL  555 (648)
Q Consensus       487 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~  555 (648)
                      +.  .+.+...+..+..+|...|++++|+..|+++ .+.| +...+..+..++...|+.++| ...+++++.
T Consensus       224 ~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~  293 (336)
T 1p5q_A          224 EL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE  293 (336)
T ss_dssp             HH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Hh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            74  2347788888889999999999999998887 4445 466788888888888888888 446666653

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.06  E-value=9.6e-06  Score=79.48  Aligned_cols=148  Identities=10%  Similarity=-0.064  Sum_probs=79.1

Q ss_pred             hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 037816          424 SVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVD  503 (648)
Q Consensus       424 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~  503 (648)
                      ...+..+...+.+.|++++|+..|++..+.  .|+...       +...++.+++...+.           ...|..+..
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~  238 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA  238 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence            345666667777788888888888887764  354432       223344444332221           136778888


Q ss_pred             HhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHH-hcCChHHH
Q 037816          504 MVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYS-CSGRWKER  580 (648)
Q Consensus       504 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~~A  580 (648)
                      +|.+.|++++|+..+++. ...| +...|..+..+|...|++++|+..|+++++..|.++.++..+..+.. ..+..+++
T Consensus       239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a  318 (338)
T 2if4_A          239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ  318 (338)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            888999999999988887 4444 57778888888999999999999999999999998888888887744 45677788


Q ss_pred             HHHHHHHHhCC
Q 037816          581 AKAIKRMKEMG  591 (648)
Q Consensus       581 ~~~~~~m~~~~  591 (648)
                      ...|++|....
T Consensus       319 ~~~~~~~l~~~  329 (338)
T 2if4_A          319 KEMYKGIFKGK  329 (338)
T ss_dssp             -----------
T ss_pred             HHHHHHhhCCC
Confidence            88888886643

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.05  E-value=4e-05  Score=78.91  Aligned_cols=114  Identities=11%  Similarity=-0.050  Sum_probs=50.1

Q ss_pred             HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHH
Q 037816          435 ARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEA  514 (648)
Q Consensus       435 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  514 (648)
                      .+.|++++|++.+++..+.. +.+...+..+..++.+.|++++|...++++.+.  .+.+...+..+..+|...|++++|
T Consensus        17 ~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~eA   93 (477)
T 1wao_1           17 FKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFRAA   93 (477)
T ss_dssp             TTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHH
Confidence            34455555555555554432 123444555555555555555555555555441  122444555555555555555555


Q ss_pred             HHHHHhC-CCCCC-HHHHHHHHHH--HHHcCChHHHHHHHH
Q 037816          515 RSFIERM-PVKPD-VLVWQALLGA--CSIHGDSEMGKYAAE  551 (648)
Q Consensus       515 ~~~~~~~-~~~p~-~~~~~~l~~~--~~~~g~~~~A~~~~~  551 (648)
                      .+.+++. ...|+ ...+..+..+  +.+.|++++|++.++
T Consensus        94 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           94 LRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            5555544 11221 1222222222  445555555555555

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.05  E-value=5.4e-05  Score=61.92  Aligned_cols=60  Identities=10%  Similarity=-0.056  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 037816          427 WNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTE  487 (648)
Q Consensus       427 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~  487 (648)
                      +..+...+.+.|++++|+..|++.++.. +-+...|..+..+|...|++++|+..+++..+
T Consensus        11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~   70 (127)
T 4gcn_A           11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVE   70 (127)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence            3334444455555555555555544432 11334444444455555555555555554443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.02  E-value=1.3e-05  Score=69.00  Aligned_cols=78  Identities=13%  Similarity=-0.030  Sum_probs=62.5

Q ss_pred             ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC-ccHHHHHHH
Q 037816          494 RAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSP-APYILMANI  570 (648)
Q Consensus       494 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~  570 (648)
                      +...|..+..+|.+.|++++|+..+++. .+.| +...|..+..+|...|++++|+..++++++++|.++ .+...+..+
T Consensus        62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~  141 (162)
T 3rkv_A           62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV  141 (162)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            4567888888899999999999988887 4444 477888899999999999999999999999999987 444444444


Q ss_pred             H
Q 037816          571 Y  571 (648)
Q Consensus       571 ~  571 (648)
                      .
T Consensus       142 ~  142 (162)
T 3rkv_A          142 T  142 (162)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.99  E-value=0.0001  Score=75.09  Aligned_cols=158  Identities=11%  Similarity=0.008  Sum_probs=117.8

Q ss_pred             HHHHHcCChHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh
Q 037816          432 AAFARHGNGFKALELYEEMKLEGVEPT----------------DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRA  495 (648)
Q Consensus       432 ~~~~~~~~~~~A~~~~~~m~~~~~~p~----------------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  495 (648)
                      ..+.+.|++++|++.|.++.+......                ...+..+...|...|++++|.+.+..+.+..+-.++.
T Consensus        12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~   91 (434)
T 4b4t_Q           12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS   91 (434)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence            445677888888888888876432111                1246778899999999999999999987643322322


Q ss_pred             ----hHHHHHHHHhhhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------
Q 037816          496 ----EHYACVVDMVGRAGLLIEARSFIERM-------PVKPD-VLVWQALLGACSIHGDSEMGKYAAEKLFLAQ------  557 (648)
Q Consensus       496 ----~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------  557 (648)
                          .+.+.+...+...|++++|.++++..       +..+. ..++..+...+...|++++|..+++++....      
T Consensus        92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~  171 (434)
T 4b4t_Q           92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK  171 (434)
T ss_dssp             HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence                23444555666789999999988776       22333 5677888999999999999999999987532      


Q ss_pred             CCCCccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037816          558 PDSPAPYILMANIYSCSGRWKERAKAIKRMKE  589 (648)
Q Consensus       558 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  589 (648)
                      |....++..++.+|...|++++|..++++...
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~  203 (434)
T 4b4t_Q          172 PSLVDVHLLESKVYHKLRNLAKSKASLTAART  203 (434)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            22345888999999999999999999998765

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.99  E-value=2.3e-05  Score=65.60  Aligned_cols=102  Identities=12%  Similarity=-0.032  Sum_probs=72.0

Q ss_pred             HHHHHhccCcHHHHHHHHHHhHHhcCCCCC-------------hhHHHHHHHHhhhcCCHHHHHHHHHhC-CC-------
Q 037816          465 LLHACSHVGLVNKGMEFLKSMTEVHRISPR-------------AEHYACVVDMVGRAGLLIEARSFIERM-PV-------  523 (648)
Q Consensus       465 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-------  523 (648)
                      ....+...|++++|+..|++..+.   .|+             ...|..+..++.+.|++++|+..+++. .+       
T Consensus        17 ~G~~l~~~g~~eeAi~~Y~kAL~l---~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~   93 (159)
T 2hr2_A           17 DAQRQLVAGEYDEAAANCRRAMEI---SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL   93 (159)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHH---HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhh---CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence            334445555555555555555542   121             226777777777777777777777665 44       


Q ss_pred             CCC-HHHH----HHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHH
Q 037816          524 KPD-VLVW----QALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMAN  569 (648)
Q Consensus       524 ~p~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~  569 (648)
                      .|+ ...|    .....++...|++++|+..|++++++.|.+..++..+..
T Consensus        94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~  144 (159)
T 2hr2_A           94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKER  144 (159)
T ss_dssp             TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHH
T ss_pred             CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence            776 5567    888999999999999999999999999998877655543

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.98  E-value=5.5e-06  Score=66.85  Aligned_cols=92  Identities=14%  Similarity=0.059  Sum_probs=65.0

Q ss_pred             cCcHHHHHHHHHHhHHhcC--CCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHH
Q 037816          472 VGLVNKGMEFLKSMTEVHR--ISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGK  547 (648)
Q Consensus       472 ~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~  547 (648)
                      .|++++|+..|+++.+. +  -+.+...+..+..+|...|++++|++.|++. ...| +...+..+..++...|++++|+
T Consensus         3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            46677777777777652 2  1225667777778888888888888888777 3334 4667778888888889999999


Q ss_pred             HHHHHHHhcCCCCCccH
Q 037816          548 YAAEKLFLAQPDSPAPY  564 (648)
Q Consensus       548 ~~~~~~~~~~p~~~~~~  564 (648)
                      ..++++++..|.++...
T Consensus        82 ~~~~~al~~~p~~~~~~   98 (117)
T 3k9i_A           82 ELLLKIIAETSDDETIQ   98 (117)
T ss_dssp             HHHHHHHHHHCCCHHHH
T ss_pred             HHHHHHHHhCCCcHHHH
Confidence            99998888888876543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.96  E-value=3.6e-05  Score=65.76  Aligned_cols=132  Identities=14%  Similarity=0.032  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC----Chh
Q 037816          426 SWNSMIAAFARHGNGFKALELYEEMKLEGV-EPT----DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP----RAE  496 (648)
Q Consensus       426 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~  496 (648)
                      ++..+...+...|++++|+..+++..+... .++    ..++..+...+...|++++|...+++..+...-.+    ...
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   90 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ   90 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence            344455555666666666666665553210 011    13455566666777777777777777654211111    144


Q ss_pred             HHHHHHHHhhhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 037816          497 HYACVVDMVGRAGLLIEARSFIERM-------PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQ  557 (648)
Q Consensus       497 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  557 (648)
                      .+..+...+...|++++|.+.+++.       +..+ ...++..+...+...|++++|...++++++..
T Consensus        91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  159 (164)
T 3ro3_A           91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS  159 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence            5666777777778877777777665       1111 13456677778888899999999998887653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.96  E-value=0.00033  Score=73.40  Aligned_cols=169  Identities=10%  Similarity=0.042  Sum_probs=135.4

Q ss_pred             CHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC-
Q 037816          408 DLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGN----------GFKALELYEEMKLEGVEPTDVTFLSLLHACSHVG-  473 (648)
Q Consensus       408 ~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g-  473 (648)
                      ..++|.+.++.+.   +.+..+|+.--.++...|+          ++++++.++++.+.. +-+..+|..-...+.+.+ 
T Consensus        44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~  122 (567)
T 1dce_A           44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE  122 (567)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred             CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence            3456777777765   3355667766666666666          899999999999865 347778888888888888 


Q ss_pred             -cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc---------
Q 037816          474 -LVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG-LLIEARSFIERM-PVKP-DVLVWQALLGACSIH---------  540 (648)
Q Consensus       474 -~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---------  540 (648)
                       +++++++.++++.+.  -+-+...|+.-...+.+.| .++++++.++++ ...| |...|+.....+...         
T Consensus       123 ~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~  200 (567)
T 1dce_A          123 PNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ  200 (567)
T ss_dssp             CCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred             ccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence             779999999999884  2347888888888888888 899999999988 5555 577788877776663         


Q ss_pred             -----CChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHH
Q 037816          541 -----GDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKE  579 (648)
Q Consensus       541 -----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~  579 (648)
                           +.++++++.+++++..+|.+..+|..+..++.+.|++++
T Consensus       201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred             ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence                 557999999999999999999999999999999988655

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.95  E-value=3.8e-05  Score=59.70  Aligned_cols=65  Identities=18%  Similarity=0.195  Sum_probs=60.7

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816          526 DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       526 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  590 (648)
                      +...+..+..+|...|++++|+..++++++.+|.++.+|..++.+|...|++++|++.+++..+.
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l   70 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV   70 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            57788889999999999999999999999999999999999999999999999999999998764

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.94  E-value=3.1e-06  Score=67.37  Aligned_cols=93  Identities=10%  Similarity=0.026  Sum_probs=73.0

Q ss_pred             ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------CccHH
Q 037816          494 RAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS------PAPYI  565 (648)
Q Consensus       494 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~  565 (648)
                      +...+..+...+.+.|++++|++.|++. ...| +...+..+..++...|++++|+..++++++..|.+      ..++.
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            4556777778888888888888888877 3334 57778888888999999999999999999999988      66777


Q ss_pred             HHHHHHHhcCChHHHHHHHHH
Q 037816          566 LMANIYSCSGRWKERAKAIKR  586 (648)
Q Consensus       566 ~l~~~~~~~g~~~~A~~~~~~  586 (648)
                      .++.++...|++++|++.+++
T Consensus        83 ~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           83 RLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHHhHhhhHhHHHH
Confidence            788888877777776655443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.92  E-value=4.2e-05  Score=78.34  Aligned_cols=65  Identities=5%  Similarity=-0.027  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037816          527 VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMG  591 (648)
Q Consensus       527 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  591 (648)
                      ...|..+..+|.+.|++++|+..++++++.+|.+..+|..++.+|...|++++|+..|++..+..
T Consensus       317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~  381 (457)
T 1kt0_A          317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN  381 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            46788899999999999999999999999999999999999999999999999999999998853

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.88  E-value=6.3e-05  Score=74.50  Aligned_cols=113  Identities=6%  Similarity=-0.011  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 037816          459 DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKP-DVLVWQALLGAC  537 (648)
Q Consensus       459 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~  537 (648)
                      ...+..+...+.+.|++++|...|+++.+..   +..          ......+++.      ...| +...|..+..+|
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~----------~~~~~~~~~~------~~~~~~~~~~~nla~~~  283 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGS----------RAAAEDADGA------KLQPVALSCVLNIGACK  283 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHH----------HHHSCHHHHG------GGHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcC----------ccccChHHHH------HHHHHHHHHHHHHHHHH
Confidence            3456666777778888888888888776520   100          0001111111      1222 356788889999


Q ss_pred             HHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816          538 SIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       538 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  590 (648)
                      .+.|++++|+..++++++.+|.++.++..++.+|...|++++|++.+++..+.
T Consensus       284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l  336 (370)
T 1ihg_A          284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI  336 (370)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999874

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.87  E-value=8.7e-05  Score=75.85  Aligned_cols=123  Identities=12%  Similarity=0.091  Sum_probs=92.3

Q ss_pred             HhccCcHHHHHHHHHHhHHhcC--CCC----ChhHHHHHHHHhhhcCCHHHHHHHHHhC---------CCCCC-HHHHHH
Q 037816          469 CSHVGLVNKGMEFLKSMTEVHR--ISP----RAEHYACVVDMVGRAGLLIEARSFIERM---------PVKPD-VLVWQA  532 (648)
Q Consensus       469 ~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~  532 (648)
                      +...|++++|..++++..+...  +.|    ...+++.|..+|...|++++|+.++++.         +..|+ ..+++.
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  398 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR  398 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            4567788888877777655311  111    3556778888888888888888877765         23344 556888


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHh-----cCCCCCc---cHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037816          533 LLGACSIHGDSEMGKYAAEKLFL-----AQPDSPA---PYILMANIYSCSGRWKERAKAIKRMKEMG  591 (648)
Q Consensus       533 l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  591 (648)
                      |...|...|++++|+.+++++++     ++|+.+.   +...+..++...|++++|...+.++++.-
T Consensus       399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999975     4566554   45678888889999999999999998743

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.87  E-value=3.5e-05  Score=75.44  Aligned_cols=150  Identities=10%  Similarity=0.012  Sum_probs=81.2

Q ss_pred             hhHHHHHHHHHHhCCCHHHHHHHHhhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 037816          393 PFVNNGLINMYSKCGDLEDSIKVFSRMAP--RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACS  470 (648)
Q Consensus       393 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~  470 (648)
                      ...+..+...+.+.|++++|...|.+...  ++...       +...++.+++...+.          ...|..+..++.
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~  241 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI  241 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence            45577788888999999999999988653  22211       122333333332221          136777888889


Q ss_pred             ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH-HHHcCChHHHH
Q 037816          471 HVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPD-VLVWQALLGA-CSIHGDSEMGK  547 (648)
Q Consensus       471 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~-~~~~g~~~~A~  547 (648)
                      +.|++++|+..++++.+.  .+.+...|..+..+|...|++++|...|++. .+.|+ ...+..+... ....+..+.+.
T Consensus       242 ~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~  319 (338)
T 2if4_A          242 KLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK  319 (338)
T ss_dssp             TTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred             HcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999874  2347788899999999999999999999988 56665 3344444444 23456778888


Q ss_pred             HHHHHHHhcCCCCC
Q 037816          548 YAAEKLFLAQPDSP  561 (648)
Q Consensus       548 ~~~~~~~~~~p~~~  561 (648)
                      ..|++++...|.++
T Consensus       320 ~~~~~~l~~~p~~~  333 (338)
T 2if4_A          320 EMYKGIFKGKDEGG  333 (338)
T ss_dssp             --------------
T ss_pred             HHHHHhhCCCCCCC
Confidence            89999998888764

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.82  E-value=7.4e-05  Score=56.59  Aligned_cols=82  Identities=18%  Similarity=0.206  Sum_probs=61.3

Q ss_pred             ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHH
Q 037816          494 RAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIY  571 (648)
Q Consensus       494 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  571 (648)
                      +...+..+...+...|++++|...+++. ...| +...+..+..++...|++++|+..++++++..|.++.++..++.++
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~   87 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK   87 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            3455666777777777777777777766 2233 4667777888888888888888888888888888888888888777


Q ss_pred             HhcC
Q 037816          572 SCSG  575 (648)
Q Consensus       572 ~~~g  575 (648)
                      ...|
T Consensus        88 ~~~g   91 (91)
T 1na3_A           88 QKQG   91 (91)
T ss_dssp             HHHC
T ss_pred             HhcC
Confidence            6554

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.81  E-value=9.4e-05  Score=59.15  Aligned_cols=78  Identities=10%  Similarity=0.044  Sum_probs=62.2

Q ss_pred             HHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816          513 EARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       513 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  590 (648)
                      +|++.|++. ...| +...+..+..++...|++++|+..++++++..|.+..++..++.+|...|++++|...+++..+.
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~   82 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA   82 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            345555555 3444 46778888888888899999999999988888888888888888898999999999888888663

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.70  E-value=0.00032  Score=58.17  Aligned_cols=112  Identities=7%  Similarity=-0.051  Sum_probs=75.4

Q ss_pred             CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHH
Q 037816          473 GLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSI----HGDSEMGKY  548 (648)
Q Consensus       473 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~  548 (648)
                      +++++|..+|++..+. + .|..  .  |...|...+.+++|.+.|++.-..-++..+..|...|..    .+++++|+.
T Consensus         9 ~d~~~A~~~~~~aa~~-g-~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~   82 (138)
T 1klx_A            9 KDLKKAIQYYVKACEL-N-EMFG--C--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQ   82 (138)
T ss_dssp             HHHHHHHHHHHHHHHT-T-CTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             cCHHHHHHHHHHHHcC-C-CHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence            3566666667666653 3 2222  2  566666666666677777666222456666777777776    678888888


Q ss_pred             HHHHHHhcCCCCCccHHHHHHHHHh----cCChHHHHHHHHHHHhCCC
Q 037816          549 AAEKLFLAQPDSPAPYILMANIYSC----SGRWKERAKAIKRMKEMGV  592 (648)
Q Consensus       549 ~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~  592 (648)
                      .++++.+.  .++.++..++.+|..    .+++++|.+++++..+.|.
T Consensus        83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~  128 (138)
T 1klx_A           83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  128 (138)
T ss_dssp             HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence            88887765  456677788888877    7788888888888877664

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.63  E-value=0.00031  Score=53.31  Aligned_cols=69  Identities=14%  Similarity=0.003  Sum_probs=61.1

Q ss_pred             CCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037816          524 KPDVLVWQALLGACSIHGD---SEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGV  592 (648)
Q Consensus       524 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~  592 (648)
                      .+|+..+..+..++...++   .++|..+++++++.+|+++.+...++..+...|++++|+..|+++.+...
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p   74 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND   74 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            4567788888888765555   79999999999999999999999999999999999999999999988654

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.63  E-value=3.4e-05  Score=64.43  Aligned_cols=84  Identities=13%  Similarity=0.084  Sum_probs=62.4

Q ss_pred             cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcC
Q 037816          508 AGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGD----------SEMGKYAAEKLFLAQPDSPAPYILMANIYSCSG  575 (648)
Q Consensus       508 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  575 (648)
                      .+++++|.+.+++. ...| +...|..+..++...++          +++|+..|+++++++|++..+|..++.+|...|
T Consensus        15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg   94 (158)
T 1zu2_A           15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA   94 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence            34455555555554 2233 34555555555555443          679999999999999999999999999999875


Q ss_pred             -----------ChHHHHHHHHHHHhCC
Q 037816          576 -----------RWKERAKAIKRMKEMG  591 (648)
Q Consensus       576 -----------~~~~A~~~~~~m~~~~  591 (648)
                                 ++++|++.|++..+..
T Consensus        95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~  121 (158)
T 1zu2_A           95 FLTPDETEAKHNFDLATQFFQQAVDEQ  121 (158)
T ss_dssp             HHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ccCcchhhhhccHHHHHHHHHHHHHhC
Confidence                       8999999999998843

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.62  E-value=0.00017  Score=57.01  Aligned_cols=67  Identities=13%  Similarity=0.055  Sum_probs=61.8

Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037816          525 PDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMG  591 (648)
Q Consensus       525 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  591 (648)
                      ++...+..+...+...|++++|+..++++++..|.++.++..++.++...|++++|++.+++..+..
T Consensus         2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   68 (111)
T 2l6j_A            2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT   68 (111)
T ss_dssp             THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            3456788888999999999999999999999999999999999999999999999999999998753

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.51  E-value=0.0013  Score=68.98  Aligned_cols=149  Identities=9%  Similarity=0.025  Sum_probs=122.9

Q ss_pred             CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCc----------HHHHHHHHHHhHHhcCCCCChhHHHHHHHHhh
Q 037816          438 GNGFKALELYEEMKLEGVEP-TDVTFLSLLHACSHVGL----------VNKGMEFLKSMTEVHRISPRAEHYACVVDMVG  506 (648)
Q Consensus       438 ~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~  506 (648)
                      ...++|++.++++...+  | +...|+.--.++...|+          +++++..++.+.+.  .+-+..+|..-..++.
T Consensus        43 ~~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~  118 (567)
T 1dce_A           43 ELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLS  118 (567)
T ss_dssp             CCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence            34678899999999855  6 45566665555555666          89999999999884  3448888988888899


Q ss_pred             hcC--CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhc-------
Q 037816          507 RAG--LLIEARSFIERM-PVKP-DVLVWQALLGACSIHG-DSEMGKYAAEKLFLAQPDSPAPYILMANIYSCS-------  574 (648)
Q Consensus       507 ~~g--~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-------  574 (648)
                      +.|  +++++++.++++ ...| +...|+.-..++.+.| .++++++.++++++.+|.+..+|...+.++.+.       
T Consensus       119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~  198 (567)
T 1dce_A          119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG  198 (567)
T ss_dssp             TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred             HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence            999  779999999999 4444 6788988888888888 899999999999999999999999999998874       


Q ss_pred             -------CChHHHHHHHHHHHhC
Q 037816          575 -------GRWKERAKAIKRMKEM  590 (648)
Q Consensus       575 -------g~~~~A~~~~~~m~~~  590 (648)
                             ++++++++.+++....
T Consensus       199 ~~~~~~~~~~~eel~~~~~ai~~  221 (567)
T 1dce_A          199 PQGRLPENVLLKELELVQNAFFT  221 (567)
T ss_dssp             SCCSSCHHHHHHHHHHHHHHHHH
T ss_pred             ccccccHHHHHHHHHHHHHHHhh
Confidence                   5679999999888763

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.46  E-value=0.00069  Score=55.88  Aligned_cols=65  Identities=9%  Similarity=-0.050  Sum_probs=41.5

Q ss_pred             CCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcC-C-CCCccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037816          525 PDVLVWQALLGACSIHG---DSEMGKYAAEKLFLAQ-P-DSPAPYILMANIYSCSGRWKERAKAIKRMKE  589 (648)
Q Consensus       525 p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  589 (648)
                      ++..+...+..++.+.+   +.++++.+++.+.+.. | .+...++.++-+|.+.|++++|+++++.+.+
T Consensus        30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~   99 (152)
T 1pc2_A           30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ   99 (152)
T ss_dssp             CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            55666666666666665   4556666666666665 4 3455666666666677777777777666655

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=97.45  E-value=9e-05  Score=72.40  Aligned_cols=395  Identities=10%  Similarity=0.067  Sum_probs=251.9

Q ss_pred             hHHHHHHHHHHHhcCCChhHHHHhhccCCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhh
Q 037816           88 ATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACD  167 (648)
Q Consensus        88 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~  167 (648)
                      .+.+|+.|..+..+.|.+.+|++.|=+  ..|+..|..+|.+..+.|.+++-+.++...++..-.|.   .=+.|+-+|+
T Consensus        53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~---IDteLi~ayA  127 (624)
T 3lvg_A           53 EPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY---VETELIFALA  127 (624)
T ss_dssp             CCCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTT---TTHHHHHHHH
T ss_pred             CccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc---cHHHHHHHHH
Confidence            456899999999999999999887744  45778899999999999999999999988777654443   3467888898


Q ss_pred             ccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccC------------------------CCCcc
Q 037816          168 RSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR------------------------VRNVI  223 (648)
Q Consensus       168 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------------------------~~~~~  223 (648)
                      +.+++.+.+.+.       -.|+..-...+.+-|...|.++.|.-+|..+.                        ..++.
T Consensus       128 k~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~k  200 (624)
T 3lvg_A          128 KTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR  200 (624)
T ss_dssp             TSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSC
T ss_pred             hhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence            888776544433       14666666777888888888888888887764                        13678


Q ss_pred             cHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcC-CCchhHHHHHHHHH
Q 037816          224 TWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLAL-QSDLCIESALMDMY  302 (648)
Q Consensus       224 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~  302 (648)
                      +|..+-.+|...+.+.-|.-.--.+.-   .||  ....++.-|-..|.+++-+.+++...  |+ .....+++.|.-.|
T Consensus       201 tWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaILY  273 (624)
T 3lvg_A          201 TWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILY  273 (624)
T ss_dssp             SHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHHH
Confidence            999999999999998877655444431   122  22345555777788888777776655  32 34566788888888


Q ss_pred             HhcCCHHHHHHHHHhccC-----------CCcccHHHHHHHHHHcCCHHHHHHHH-------------HHHHHcCCCcCH
Q 037816          303 SKCGSVEDAWQIFEFAEE-----------LDGVSMTVILVGFAQNGFEEEAMQLF-------------VKMVKAGIEIDP  358 (648)
Q Consensus       303 ~~~~~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~~~~~~a~~~~-------------~~m~~~~~~p~~  358 (648)
                      ++- ++++..+.++..-.           .....|.-++-.|.+-.+++.|....             .+....  ..+.
T Consensus       274 sKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~K--VaN~  350 (624)
T 3lvg_A          274 SKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANV  350 (624)
T ss_dssp             HSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGG--CSCS
T ss_pred             Hhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHH--cchH
Confidence            776 45555555544332           14456777777787777777665321             010000  1233


Q ss_pred             HHHHH---------------HHHHHhccCChhHHHHHHHHHHHh----------CCCCchhHHHHHHHHHHhCCCHHHHH
Q 037816          359 NMVSA---------------VLGVFGVDTSLGLGKQIHSLIIKS----------DFTSNPFVNNGLINMYSKCGDLEDSI  413 (648)
Q Consensus       359 ~~~~~---------------ll~~~~~~~~~~~a~~~~~~~~~~----------~~~~~~~~~~~li~~~~~~g~~~~A~  413 (648)
                      ..|-.               |+.++...=+..++.+++...-..          .-..+..+-.++-+.|....+++.-+
T Consensus       351 EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR  430 (624)
T 3lvg_A          351 ELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALR  430 (624)
T ss_dssp             HHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHH
Confidence            33333               333333333333333333321100          01123344556666777777766555


Q ss_pred             HHHhhcCC------------CChhHHHH-HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 037816          414 KVFSRMAP------------RNSVSWNS-MIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGME  480 (648)
Q Consensus       414 ~~~~~~~~------------~~~~~~~~-l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~  480 (648)
                      ...+....            ....-|.. ....|.++++|.+++.+.++         ...|.-.|.....+|+.+-|.+
T Consensus       431 ~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~Kk---------DklykDAietAa~S~~~elaee  501 (624)
T 3lvg_A          431 TSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKK---------DSLYKDAMQYASESKDTELAEE  501 (624)
T ss_dssp             HTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSST---------TCCTTGGGTTTTTCCCTTHHHH
T ss_pred             HHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHHh---------cccHHHHHHHHHHcCCHHHHHH
Confidence            44443322            12222222 23445666777776654322         1223445666788899999999


Q ss_pred             HHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHH
Q 037816          481 FLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSF  517 (648)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  517 (648)
                      +++-..+.    -+...|...+-.|...=+++-++++
T Consensus       502 LL~yFv~~----g~~EcF~a~LytCYdLlrpDvVlEl  534 (624)
T 3lvg_A          502 LLQWFLQE----EKRECFGACLFTCYDLLRPDVVLET  534 (624)
T ss_dssp             HHHHHHHH----CSTHHHHHHHHHTSSSSSCHHHHHH
T ss_pred             HHHHHHHc----CchHHHHHHHHHHhhccChHHHHHH
Confidence            99988875    3566777788888888888888876

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.44  E-value=0.00041  Score=52.30  Aligned_cols=64  Identities=19%  Similarity=0.279  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816          527 VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       527 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  590 (648)
                      ...+..+...+...|++++|+..++++++..|.++.++..++.++...|++++|++.+++..+.
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~   72 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL   72 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            5567788889999999999999999999999999999999999999999999999999999874

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.42  E-value=0.00011  Score=61.34  Aligned_cols=50  Identities=16%  Similarity=0.105  Sum_probs=35.5

Q ss_pred             HHHHHHHHhC-CCCCC-HHHHHHHHHHHHHc-----------CChHHHHHHHHHHHhcCCCCC
Q 037816          512 IEARSFIERM-PVKPD-VLVWQALLGACSIH-----------GDSEMGKYAAEKLFLAQPDSP  561 (648)
Q Consensus       512 ~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~p~~~  561 (648)
                      ++|+..|++. .+.|+ ...|..+..+|...           |++++|++.|+++++++|++.
T Consensus        63 ~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~  125 (158)
T 1zu2_A           63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT  125 (158)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence            4566666555 44443 45566666666554           589999999999999999974

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.41  E-value=0.00022  Score=72.88  Aligned_cols=114  Identities=10%  Similarity=-0.001  Sum_probs=87.4

Q ss_pred             HhhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHh-----cCCCC---CccHH
Q 037816          504 MVGRAGLLIEARSFIERM---------PVKPD-VLVWQALLGACSIHGDSEMGKYAAEKLFL-----AQPDS---PAPYI  565 (648)
Q Consensus       504 ~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~---~~~~~  565 (648)
                      .+...|++++|+.++++.         ...|+ ..+++.|..+|...|++++|+.+++++++     ..|+.   ..+++
T Consensus       318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  397 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM  397 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            456789999999988776         12233 56789999999999999999999999975     34444   45788


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhCCCCCCCceeEEEEcCEEEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 037816          566 LMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMI  635 (648)
Q Consensus       566 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~  635 (648)
                      .++.+|..+|++++|+.++++..+.-.                  ......||...++...+.+...+|.
T Consensus       398 nLa~~~~~~G~~~eA~~~~~~Al~i~~------------------~~lG~~Hp~~~~~~~~l~~~~~e~~  449 (490)
T 3n71_A          398 RAGLTNWHAGHIEVGHGMICKAYAILL------------------VTHGPSHPITKDLEAMRMQTEMELR  449 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHH------------------HHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHH------------------HHhCCCChHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999876211                  0123578999888877776665443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.37  E-value=0.00063  Score=54.16  Aligned_cols=80  Identities=15%  Similarity=0.036  Sum_probs=51.5

Q ss_pred             HHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 037816          478 GMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFL  555 (648)
Q Consensus       478 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  555 (648)
                      |...|++..+.  .+.+...+..+...|...|++++|+..|++. ...| +...|..+..++...|++++|+..++++++
T Consensus         4 a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            4 ITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             HHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            45555555441  2235566666667777777777777777665 3333 356677777777777888888887777777


Q ss_pred             cCCC
Q 037816          556 AQPD  559 (648)
Q Consensus       556 ~~p~  559 (648)
                      ..|.
T Consensus        82 ~~~~   85 (115)
T 2kat_A           82 AAQS   85 (115)
T ss_dssp             HHHH
T ss_pred             hccc
Confidence            6654

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.32  E-value=0.00043  Score=69.67  Aligned_cols=115  Identities=10%  Similarity=0.062  Sum_probs=84.8

Q ss_pred             HHhhhcCCHHHHHHHHHhC------CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHh-----cCCCC---CccH
Q 037816          503 DMVGRAGLLIEARSFIERM------PVKPD----VLVWQALLGACSIHGDSEMGKYAAEKLFL-----AQPDS---PAPY  564 (648)
Q Consensus       503 ~~~~~~g~~~~A~~~~~~~------~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~---~~~~  564 (648)
                      ..+.+.|++++|++++++.      -+.|+    ..+++.|..+|...|++++|+.+++++++     ..|..   ...+
T Consensus       295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l  374 (429)
T 3qwp_A          295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV  374 (429)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred             HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence            3445667777777777655      11222    45688888889999999999999998874     23443   3578


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCceeEEEEcCEEEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 037816          565 ILMANIYSCSGRWKERAKAIKRMKEMGVDKETGISWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMI  635 (648)
Q Consensus       565 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~  635 (648)
                      +.++.+|..+|++++|+.++++..+--.                  ..-...||...++...+.+...+|.
T Consensus       375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~------------------~~lG~~Hp~~~~~~~~l~~~~~e~~  427 (429)
T 3qwp_A          375 MKVGKLQLHQGMFPQAMKNLRLAFDIMR------------------VTHGREHSLIEDLILLLEECDANIR  427 (429)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHH------------------HHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHH------------------HhcCCCChHHHHHHHHHHHHHHHHh
Confidence            8999999999999999999999866210                  0123589999999988888888775

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.28  E-value=0.0036  Score=51.70  Aligned_cols=113  Identities=13%  Similarity=-0.048  Sum_probs=92.7

Q ss_pred             cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhh----cCCHH
Q 037816          437 HGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR----AGLLI  512 (648)
Q Consensus       437 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~  512 (648)
                      .+++++|+..|++..+.| .|+..    +...|...+.+++|.++|++..+.    -++..+..|...|..    .++++
T Consensus         8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~   78 (138)
T 1klx_A            8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLR   78 (138)
T ss_dssp             HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred             ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHH
Confidence            356889999999999988 44444    667777778889999999999874    467778888888888    88999


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCC
Q 037816          513 EARSFIERMPVKPDVLVWQALLGACSI----HGDSEMGKYAAEKLFLAQP  558 (648)
Q Consensus       513 ~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p  558 (648)
                      +|.+.|++.-..-++..+..|...|..    .++.++|+..++++.+...
T Consensus        79 ~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~  128 (138)
T 1klx_A           79 KAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  128 (138)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence            999999988323577888889889988    8999999999999988754

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=97.26  E-value=0.029  Score=44.29  Aligned_cols=141  Identities=10%  Similarity=0.011  Sum_probs=111.8

Q ss_pred             HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHH
Q 037816          434 FARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIE  513 (648)
Q Consensus       434 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  513 (648)
                      +.-.|..++..++..+....   .+..-|+.+|--....-+-+-..++++.+-+-+.+              ..+|++..
T Consensus        17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKr   79 (172)
T 1wy6_A           17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKS   79 (172)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHH
T ss_pred             HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHH
Confidence            34568888999999888863   46677888887777778888888888888653322              34677777


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 037816          514 ARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVD  593 (648)
Q Consensus       514 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~  593 (648)
                      ....+-.++  .+...++..+.....+|.-++-.+++..++..++.++.....++.+|.+.|+..+|.+++++..+.|++
T Consensus        80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k  157 (172)
T 1wy6_A           80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK  157 (172)
T ss_dssp             HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence            777777663  345667778888999999999999999988888888999999999999999999999999999999874

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.22  E-value=0.00081  Score=61.81  Aligned_cols=86  Identities=20%  Similarity=0.192  Sum_probs=72.5

Q ss_pred             HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHHc-----CChHHHHHHHHHHHhcCCCC-CccHHHHHHHHHhc-CChHH
Q 037816          511 LIEARSFIERM-PVKPD---VLVWQALLGACSIH-----GDSEMGKYAAEKLFLAQPDS-PAPYILMANIYSCS-GRWKE  579 (648)
Q Consensus       511 ~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~  579 (648)
                      ..+|...+++. .+.|+   ...|..+...|...     |+.++|.++|+++++++|+. ..++..+++.+++. |+.++
T Consensus       179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~  258 (301)
T 3u64_A          179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG  258 (301)
T ss_dssp             HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence            45666666666 56676   66788888888884     99999999999999999975 99999999999985 99999


Q ss_pred             HHHHHHHHHhCCCCCCC
Q 037816          580 RAKAIKRMKEMGVDKET  596 (648)
Q Consensus       580 A~~~~~~m~~~~~~~~~  596 (648)
                      |.+.+++.+....+.+|
T Consensus       259 a~~~L~kAL~a~p~~~P  275 (301)
T 3u64_A          259 FDEALDRALAIDPESVP  275 (301)
T ss_dssp             HHHHHHHHHHCCGGGCS
T ss_pred             HHHHHHHHHcCCCCCCC
Confidence            99999999998776433

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.19  E-value=0.00035  Score=53.88  Aligned_cols=79  Identities=15%  Similarity=0.083  Sum_probs=56.8

Q ss_pred             HHHHhhhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCCh
Q 037816          501 VVDMVGRAGLLIEARSFIERM-PVKP-DVL-VWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRW  577 (648)
Q Consensus       501 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  577 (648)
                      ....+.+.|++++|.+.+++. ...| +.. .+..+..++...|++++|+..++++++.+|.++.++..        +.+
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~   77 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV   77 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence            345667778888888888776 3344 456 77778888888889999999999988888888766632        445


Q ss_pred             HHHHHHHHHH
Q 037816          578 KERAKAIKRM  587 (648)
Q Consensus       578 ~~A~~~~~~m  587 (648)
                      .++...+++.
T Consensus        78 ~~a~~~~~~~   87 (99)
T 2kc7_A           78 MDILNFYNKD   87 (99)
T ss_dssp             HHHHHHHCCT
T ss_pred             HHHHHHHHHH
Confidence            5555555544

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=97.16  E-value=3.7e-05  Score=75.07  Aligned_cols=238  Identities=9%  Similarity=0.022  Sum_probs=159.9

Q ss_pred             CChhHHHHHHHHhHhcCChhHHHHHhcccCCCCcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhh
Q 037816          189 EEVTVGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACS  268 (648)
Q Consensus       189 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~  268 (648)
                      ..+.+|+.|..+..+.+++.+|.+-|=+.  .|...|..+|....+.|.+++-+..+.-.++..-.|.  .=+.|+-+|+
T Consensus        52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~--IDteLi~ayA  127 (624)
T 3lvg_A           52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY--VETELIFALA  127 (624)
T ss_dssp             CCCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTT--TTHHHHHHHH
T ss_pred             CCccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc--cHHHHHHHHH
Confidence            34567888888988888888887766443  4666788999999999999999998887776543343  3457888999


Q ss_pred             ccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC------------------------CCcc
Q 037816          269 GLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE------------------------LDGV  324 (648)
Q Consensus       269 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------------------------~~~~  324 (648)
                      +.+++.+-++++.       .|+..-...+.+-|...|.++.|.-+|..+..                        .++.
T Consensus       128 k~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~k  200 (624)
T 3lvg_A          128 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR  200 (624)
T ss_dssp             TSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSC
T ss_pred             hhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence            9888776554442       35555556677778888888888877766542                        3778


Q ss_pred             cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 037816          325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYS  404 (648)
Q Consensus       325 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  404 (648)
                      +|..+-.+|...+++.-|.-.--.++-+   |  .....++..|-..|.+++...+++.-.... .....+++-|.-.|+
T Consensus       201 tWKeV~~ACvd~~EfrLAqicGLniIvh---a--deL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYs  274 (624)
T 3lvg_A          201 TWKEVCFACVDGKEFRLAQMCGLHIVVH---A--DELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS  274 (624)
T ss_dssp             SHHHHTHHHHHSCTTTTTTHHHHHHHCC---S--SCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCchHHHHHHHhcchhccc---H--HHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHH
Confidence            8999999999988877665443333321   1  112234555667777777777776655322 456677777777777


Q ss_pred             hCCCHHHHHHHHhhcCC----C-------ChhHHHHHHHHHHHcCChHHHH
Q 037816          405 KCGDLEDSIKVFSRMAP----R-------NSVSWNSMIAAFARHGNGFKAL  444 (648)
Q Consensus       405 ~~g~~~~A~~~~~~~~~----~-------~~~~~~~l~~~~~~~~~~~~A~  444 (648)
                      +- ++++..+.++..-.    |       ....|.-++-.|.+-.+++.|.
T Consensus       275 KY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~  324 (624)
T 3lvg_A          275 KF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI  324 (624)
T ss_dssp             SS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred             hc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence            65 34444444433221    1       4556777777777777777664

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.11  E-value=0.012  Score=56.46  Aligned_cols=138  Identities=14%  Similarity=0.042  Sum_probs=70.9

Q ss_pred             CCChhHHHHHHHHHHH--cC---ChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhc---cC-----cHHHHHHHHHHhH
Q 037816          421 PRNSVSWNSMIAAFAR--HG---NGFKALELYEEMKLEGVEPT-DVTFLSLLHACSH---VG-----LVNKGMEFLKSMT  486 (648)
Q Consensus       421 ~~~~~~~~~l~~~~~~--~~---~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~---~g-----~~~~A~~~~~~~~  486 (648)
                      +.+...|...+.+...  .+   +..+|..+|++..+..  |+ ...+..+..++..   .+     ........++...
T Consensus       191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD--P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~  268 (372)
T 3ly7_A          191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS--PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV  268 (372)
T ss_dssp             CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence            3466667666655432  22   3578888888888854  65 3445444444321   00     0111111111111


Q ss_pred             HhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 037816          487 EVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS  560 (648)
Q Consensus       487 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~  560 (648)
                      .....+.++.+|..+...+...|++++|...++++ ...|+...|..+...+.-.|+.++|.+.+++++.++|..
T Consensus       269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~  343 (372)
T 3ly7_A          269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA  343 (372)
T ss_dssp             TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred             hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            10112335555555555555556666666666665 334555555555555666666666666666666666654

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.10  E-value=0.0011  Score=51.01  Aligned_cols=59  Identities=24%  Similarity=0.376  Sum_probs=54.7

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHhcCCCCCc-cHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037816          533 LLGACSIHGDSEMGKYAAEKLFLAQPDSPA-PYILMANIYSCSGRWKERAKAIKRMKEMG  591 (648)
Q Consensus       533 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  591 (648)
                      ....+...|++++|+..++++++..|.++. ++..++.+|...|++++|++.+++..+..
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~   65 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN   65 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            456788999999999999999999999999 99999999999999999999999998754

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.08  E-value=0.00071  Score=67.91  Aligned_cols=82  Identities=15%  Similarity=0.064  Sum_probs=60.6

Q ss_pred             cCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHh-----cCCCC---CccHHHHHH
Q 037816          508 AGLLIEARSFIERM---------PVKPD-VLVWQALLGACSIHGDSEMGKYAAEKLFL-----AQPDS---PAPYILMAN  569 (648)
Q Consensus       508 ~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~---~~~~~~l~~  569 (648)
                      .|++++|+.++++.         +..|+ ..+++.|..+|...|++++|+.+++++++     ..|+.   ...++.++.
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~  390 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR  390 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            45666666666554         12233 45678888888889999999998888874     23443   356888999


Q ss_pred             HHHhcCChHHHHHHHHHHHh
Q 037816          570 IYSCSGRWKERAKAIKRMKE  589 (648)
Q Consensus       570 ~~~~~g~~~~A~~~~~~m~~  589 (648)
                      +|..+|++++|+.++++..+
T Consensus       391 ~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          391 LYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhccCHHHHHHHHHHHHH
Confidence            99999999999999998866

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=96.96  E-value=0.003  Score=48.68  Aligned_cols=64  Identities=16%  Similarity=0.207  Sum_probs=35.1

Q ss_pred             ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 037816          423 NSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTE  487 (648)
Q Consensus       423 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~  487 (648)
                      +...+..+...|...|++++|+..|++..+.. +.+...|..+..++...|++++|...+++..+
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            34445555555555666666666666655543 12344555555555666666666666655544

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=96.75  E-value=0.7  Score=48.33  Aligned_cols=113  Identities=9%  Similarity=-0.027  Sum_probs=60.8

Q ss_pred             ChHHHHHHHHHHHHcCCCCCHHH----HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHH
Q 037816          439 NGFKALELYEEMKLEGVEPTDVT----FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEA  514 (648)
Q Consensus       439 ~~~~A~~~~~~m~~~~~~p~~~~----~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  514 (648)
                      +.+.|...+....+.. ..+...    ...+.......+...++...+......   .++.....-.+....+.|+++.|
T Consensus       229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a  304 (618)
T 1qsa_A          229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGL  304 (618)
T ss_dssp             CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred             CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHH
Confidence            6677777777776543 223322    222333334444344555555554332   23333333344444566888888


Q ss_pred             HHHHHhCCCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 037816          515 RSFIERMPVKP--DVLVWQALLGACSIHGDSEMGKYAAEKLFL  555 (648)
Q Consensus       515 ~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  555 (648)
                      ...|+.|+..+  ...-.-=+.+++...|+.++|..+|+++..
T Consensus       305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (618)
T ss_dssp             HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            88888773322  222222344566677888888887777764

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.68  E-value=0.0054  Score=61.52  Aligned_cols=92  Identities=11%  Similarity=-0.018  Sum_probs=58.6

Q ss_pred             cCcHHHHHHHHHHhHHhc--CCCC----ChhHHHHHHHHhhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHH
Q 037816          472 VGLVNKGMEFLKSMTEVH--RISP----RAEHYACVVDMVGRAGLLIEARSFIERM---------PVKPD-VLVWQALLG  535 (648)
Q Consensus       472 ~g~~~~A~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~  535 (648)
                      .|++++|..++++..+..  -+.|    ...+++.|..+|...|++++|+.++++.         +..|+ ..+++.|..
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~  390 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR  390 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            355666666666554421  1111    2355666777777777777777766655         23344 455888888


Q ss_pred             HHHHcCChHHHHHHHHHHHh-----cCCCCCcc
Q 037816          536 ACSIHGDSEMGKYAAEKLFL-----AQPDSPAP  563 (648)
Q Consensus       536 ~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~  563 (648)
                      .|...|++++|+.+++++++     .+|+.|.+
T Consensus       391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~  423 (433)
T 3qww_A          391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI  423 (433)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred             HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence            89999999999999888875     45665533

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.62  E-value=0.01  Score=46.91  Aligned_cols=65  Identities=8%  Similarity=-0.071  Sum_probs=28.5

Q ss_pred             CCHHHHHHHHHHHHHcCChHH---HHHHHHHHHhcC-C-CCCccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037816          525 PDVLVWQALLGACSIHGDSEM---GKYAAEKLFLAQ-P-DSPAPYILMANIYSCSGRWKERAKAIKRMKE  589 (648)
Q Consensus       525 p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  589 (648)
                      |+..+--.+.+++.+..+...   ++.+++.+.+.. | ........++-++.+.|+|++|+++++.+++
T Consensus        33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~  102 (126)
T 1nzn_A           33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ  102 (126)
T ss_dssp             CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            333343344444444433222   444444444433 2 2233444444555555555555555555444

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.59  E-value=0.1  Score=57.59  Aligned_cols=46  Identities=13%  Similarity=-0.007  Sum_probs=25.4

Q ss_pred             HHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Q 037816          302 YSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKM  349 (648)
Q Consensus       302 ~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m  349 (648)
                      ....|+++.|.++.+.+.  +...|..+...+.+.++++.|.+.|.++
T Consensus       662 ~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          662 ALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            344555665555554442  3345555666666666666666666554

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.59  E-value=0.013  Score=58.84  Aligned_cols=99  Identities=12%  Similarity=0.025  Sum_probs=67.5

Q ss_pred             HHHHhccCcHHHHHHHHHHhHHhc--CCCC----ChhHHHHHHHHhhhcCCHHHHHHHHHhC---------CCCCC-HHH
Q 037816          466 LHACSHVGLVNKGMEFLKSMTEVH--RISP----RAEHYACVVDMVGRAGLLIEARSFIERM---------PVKPD-VLV  529 (648)
Q Consensus       466 l~~~~~~g~~~~A~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~  529 (648)
                      +..+...|++++|..++++..+..  -+.|    ...+++.|..+|...|++++|+.++++.         +..|+ ..+
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            334455677777777777776421  1112    2456777777788888888888777765         23344 456


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHh-----cCCCCCccH
Q 037816          530 WQALLGACSIHGDSEMGKYAAEKLFL-----AQPDSPAPY  564 (648)
Q Consensus       530 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~  564 (648)
                      ++.|...|...|++++|+.+++++++     .+|+.|.+-
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~  413 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIE  413 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence            88888999999999999999999875     456665443

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=96.54  E-value=0.018  Score=55.31  Aligned_cols=134  Identities=14%  Similarity=0.094  Sum_probs=94.1

Q ss_pred             CCCCHHHHHHHHHHH--hcc---CcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHhhh---cC-----C---HHHHHHH
Q 037816          455 VEPTDVTFLSLLHAC--SHV---GLVNKGMEFLKSMTEVHRISPR-AEHYACVVDMVGR---AG-----L---LIEARSF  517 (648)
Q Consensus       455 ~~p~~~~~~~ll~~~--~~~---g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~g-----~---~~~A~~~  517 (648)
                      .+.+...|...+++.  ...   .+..+|..+|+++.+.   .|+ ...+..+..+|.-   .+     .   ...+.+.
T Consensus       190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a  266 (372)
T 3ly7_A          190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN  266 (372)
T ss_dssp             SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence            345667777777664  332   3467899999999874   564 4455544444421   11     1   1122222


Q ss_pred             HHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037816          518 IERM-PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGV  592 (648)
Q Consensus       518 ~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~  592 (648)
                      ...+ ....++.+|..+...+...|++++|+..+++++.++|. ...|..++.++.-.|++++|.+.+++......
T Consensus       267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P  341 (372)
T 3ly7_A          267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRP  341 (372)
T ss_dssp             HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred             HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            2223 23457888888888888889999999999999999964 56778999999999999999999999988654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.48  E-value=0.064  Score=59.23  Aligned_cols=166  Identities=14%  Similarity=0.087  Sum_probs=101.0

Q ss_pred             HHHhcCCchHHHH-HHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCCh
Q 037816          129 GFLRNGEFDMGFG-FFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSS  207 (648)
Q Consensus       129 ~~~~~g~~~~A~~-~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  207 (648)
                      .....+++++|.+ ++..+      |+.. ....++..+...|..+.|..+.+         +..   .-.......|++
T Consensus       608 ~~~~~~~~~~a~~~~l~~i------~~~~-~~~~~~~~l~~~~~~~~a~~~~~---------~~~---~~f~~~l~~~~~  668 (814)
T 3mkq_A          608 TLTLRGEIEEAIENVLPNV------EGKD-SLTKIARFLEGQEYYEEALNISP---------DQD---QKFELALKVGQL  668 (814)
T ss_dssp             HHHHTTCHHHHHHHTGGGC------CCHH-HHHHHHHHHHHTTCHHHHHHHCC---------CHH---HHHHHHHHHTCH
T ss_pred             HHHHhCCHHHHHHHHHhcC------CchH-HHHHHHHHHHhCCChHHheecCC---------Ccc---hheehhhhcCCH
Confidence            3345677777765 44221      1011 33556666666677666665432         111   113345678999


Q ss_pred             hHHHHHhcccCCCCcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhc
Q 037816          208 SSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLA  287 (648)
Q Consensus       208 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~  287 (648)
                      +.|.++.+.+.  +...|..+...+.+.|+++.|.+.|..+..         |..+...+...++.+...++.+.....|
T Consensus       669 ~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~  737 (814)
T 3mkq_A          669 TLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG  737 (814)
T ss_dssp             HHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            99999988775  446899999999999999999999998854         4455555555666666655555544443


Q ss_pred             CCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHHcCCHHHHHHHHHH
Q 037816          288 LQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVK  348 (648)
Q Consensus       288 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  348 (648)
                      .      ++.-..+|.+.|++++|.++                  |.+.+++++|..+-+.
T Consensus       738 ~------~~~A~~~~~~~g~~~~a~~~------------------~~~~~~~~~A~~lA~~  774 (814)
T 3mkq_A          738 K------FNLAFNAYWIAGDIQGAKDL------------------LIKSQRFSEAAFLGST  774 (814)
T ss_dssp             C------HHHHHHHHHHHTCHHHHHHH------------------HHHTTCHHHHHHHHHH
T ss_pred             c------hHHHHHHHHHcCCHHHHHHH------------------HHHcCChHHHHHHHHH
Confidence            1      23333445566666666655                  4455666666665443

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.38  E-value=0.087  Score=42.40  Aligned_cols=92  Identities=5%  Similarity=-0.013  Sum_probs=68.3

Q ss_pred             CCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcCCC-CCccHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCce
Q 037816          523 VKPDVLVWQALLGACSIHG---DSEMGKYAAEKLFLAQPD-SPAPYILMANIYSCSGRWKERAKAIKRMKEMGVDKETGI  598 (648)
Q Consensus       523 ~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~  598 (648)
                      ..|+..+--.+.+++.+..   +..+++.+++.+.+..|. .......++-++.+.|+|++|+++.+.+++         
T Consensus        35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~---------  105 (144)
T 1y8m_A           35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE---------  105 (144)
T ss_dssp             TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH---------
T ss_pred             CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh---------
Confidence            3567777777777777775   455788888888887774 345777888889999999999999998877         


Q ss_pred             eEEEEcCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHhcCcc
Q 037816          599 SWIEIEKQVHSFVVDDKMHPQADTIHGVLAELLRLMIDEGYV  640 (648)
Q Consensus       599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~g~~  640 (648)
                                       .+|.+.+....-..+.++|.+.|+.
T Consensus       106 -----------------~eP~n~QA~~Lk~~Ie~~i~kdGli  130 (144)
T 1y8m_A          106 -----------------HERNNKQVGALKSMVEDKIQKETLK  130 (144)
T ss_dssp             -----------------TCCCCHHHHHHHHHHHHHHHHTTTT
T ss_pred             -----------------cCCCcHHHHHHHHHHHHHHHHhchh
Confidence                             3466666666666667777777764

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.37  E-value=0.018  Score=44.56  Aligned_cols=42  Identities=21%  Similarity=0.161  Sum_probs=35.2

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHH
Q 037816          526 DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILM  567 (648)
Q Consensus       526 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l  567 (648)
                      ....+..|..++.+.|+++.|+.+++++++..|.++.+...+
T Consensus        45 ~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~   86 (104)
T 2v5f_A           45 KVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL   86 (104)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence            466788888999999999999999999999999987665554

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.28  E-value=0.025  Score=42.59  Aligned_cols=69  Identities=10%  Similarity=-0.057  Sum_probs=51.0

Q ss_pred             CCChhHHHHHHHHhhhcCC---HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 037816          492 SPRAEHYACVVDMVGRAGL---LIEARSFIERM-PVKPD-VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS  560 (648)
Q Consensus       492 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~  560 (648)
                      +.++..+..+..++...++   .++|..++++. ...|+ +.....+...+.+.|++++|+..|+++++.+|++
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            3466677777777654444   67888888777 44554 6667777788888899999999999998888883

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=95.95  E-value=0.025  Score=46.62  Aligned_cols=87  Identities=11%  Similarity=-0.059  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHHcCChHHHH
Q 037816          475 VNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAG---LLIEARSFIERM-PVK-P--DVLVWQALLGACSIHGDSEMGK  547 (648)
Q Consensus       475 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~A~  547 (648)
                      ...+.+-|.+..+. + .++..+...+..++++.+   +.++++.++++. ... |  +...+-.|.-+|.+.|++++|.
T Consensus        14 l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~   91 (152)
T 1pc2_A           14 LLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL   91 (152)
T ss_dssp             HHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence            33444445544442 2 245555556666666665   444666666655 222 4  2455666777889999999999


Q ss_pred             HHHHHHHhcCCCCCcc
Q 037816          548 YAAEKLFLAQPDSPAP  563 (648)
Q Consensus       548 ~~~~~~~~~~p~~~~~  563 (648)
                      ++++.+++.+|++..+
T Consensus        92 ~y~~~lL~ieP~n~QA  107 (152)
T 1pc2_A           92 KYVRGLLQTEPQNNQA  107 (152)
T ss_dssp             HHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHhcCCCCHHH
Confidence            9999999999988543

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=95.69  E-value=0.042  Score=42.45  Aligned_cols=65  Identities=11%  Similarity=-0.039  Sum_probs=54.8

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------CCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816          526 DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQ-------PDSPAPYILMANIYSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       526 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  590 (648)
                      +..-...+...+.+.|+++.|+..++++++..       +..+.++..++.++.+.|++++|..+++++.+.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l   75 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            44556678889999999999999999998643       234567999999999999999999999999773

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.36  E-value=0.68  Score=39.14  Aligned_cols=103  Identities=10%  Similarity=0.043  Sum_probs=64.1

Q ss_pred             HHhHhcCChhHHHHHhcccCCCCcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHH
Q 037816          199 TSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQ  278 (648)
Q Consensus       199 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~  278 (648)
                      ......|+++.|.++.+.+  .+...|..|.+.....|+++-|.+.|.....         +..+.-.|...|+.+...+
T Consensus        13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k   81 (177)
T 3mkq_B           13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK   81 (177)
T ss_dssp             HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence            3455677888887777665  3455788888888888888888888877754         4444445555666666555


Q ss_pred             HHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 037816          279 IHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFA  318 (648)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  318 (648)
                      +-+.....|-      ++.-...+...|+++++.++|.+.
T Consensus        82 la~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B           82 MQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG  115 (177)
T ss_dssp             HHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence            5444444331      233444455566666666665543

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=95.29  E-value=0.092  Score=41.66  Aligned_cols=68  Identities=6%  Similarity=-0.019  Sum_probs=48.7

Q ss_pred             CCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCC-CCccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037816          522 PVKPDVLVWQALLGACSIHGD---SEMGKYAAEKLFLAQPD-SPAPYILMANIYSCSGRWKERAKAIKRMKE  589 (648)
Q Consensus       522 ~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  589 (648)
                      +-.|+..+--.+.+++.+..+   ..+++.+++.+.+..|. ....+..++-++.+.|++++|+++.+.+.+
T Consensus        35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~  106 (134)
T 3o48_A           35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE  106 (134)
T ss_dssp             GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred             CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            335666666666677776653   45677788888777763 356677788888888888888888888766

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=94.94  E-value=0.22  Score=39.31  Aligned_cols=90  Identities=10%  Similarity=-0.112  Sum_probs=59.1

Q ss_pred             cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHHcCChHHH
Q 037816          474 LVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIE---ARSFIERM-PVK-P--DVLVWQALLGACSIHGDSEMG  546 (648)
Q Consensus       474 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~A  546 (648)
                      ....+.+-|.+.... +. ++..+--.+..++++......   ++.+++.. ... |  .....-.|.-++.+.|++++|
T Consensus        16 ~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A   93 (126)
T 1nzn_A           16 DLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA   93 (126)
T ss_dssp             HHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence            344455555555443 32 666666666677777665554   66777666 222 3  233445566788999999999


Q ss_pred             HHHHHHHHhcCCCCCccHH
Q 037816          547 KYAAEKLFLAQPDSPAPYI  565 (648)
Q Consensus       547 ~~~~~~~~~~~p~~~~~~~  565 (648)
                      .+.++.+++..|.+..+..
T Consensus        94 ~~~~~~lL~~eP~n~QA~~  112 (126)
T 1nzn_A           94 LKYVRGLLQTEPQNNQAKE  112 (126)
T ss_dssp             HHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHH
Confidence            9999999999999864443

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=94.89  E-value=5.5  Score=43.45  Aligned_cols=248  Identities=9%  Similarity=-0.032  Sum_probs=129.8

Q ss_pred             HHHHhcCCHHHHHHHHHhccCC----Ccc--cHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-------CcCHHHHHHHHH
Q 037816          300 DMYSKCGSVEDAWQIFEFAEEL----DGV--SMTVILVGFAQNGFEEEAMQLFVKMVKAGI-------EIDPNMVSAVLG  366 (648)
Q Consensus       300 ~~~~~~~~~~~A~~~~~~~~~~----~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-------~p~~~~~~~ll~  366 (648)
                      -+....|+.+++..+++.....    +..  .-..+.-+.+..|..+++..++.......-       .+....-..+--
T Consensus       382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL  461 (963)
T 4ady_A          382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI  461 (963)
T ss_dssp             HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred             hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence            3456778888888888776542    111  122334456666666678887777655321       011111222222


Q ss_pred             HH--hccCChhHHHHHHHHHHHhCCCCch--hHHHHHHHHHHhCCCHHHHHHHHhhcCC-CC--hhHHHHHHHHHHHcCC
Q 037816          367 VF--GVDTSLGLGKQIHSLIIKSDFTSNP--FVNNGLINMYSKCGDLEDSIKVFSRMAP-RN--SVSWNSMIAAFARHGN  439 (648)
Q Consensus       367 ~~--~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~--~~~~~~l~~~~~~~~~  439 (648)
                      ++  ...++. ++...+..+....- +..  ..--+|...+.-.|+-+....++..+.+ .+  +.-.-.+.-++...|+
T Consensus       462 Gla~~GS~~e-ev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~  539 (963)
T 4ady_A          462 GLAAMGSANI-EVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGR  539 (963)
T ss_dssp             HHHSTTCCCH-HHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC
T ss_pred             HHHhcCCCCH-HHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC
Confidence            23  233333 44444444443221 111  1122334445567777777777765432 22  2223333444557789


Q ss_pred             hHHHHHHHHHHHHcCCCCCHH-HHH---HHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHH
Q 037816          440 GFKALELYEEMKLEGVEPTDV-TFL---SLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEAR  515 (648)
Q Consensus       440 ~~~A~~~~~~m~~~~~~p~~~-~~~---~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  515 (648)
                      .+.+..+++.+...   .+.. -|.   .+.-+|+..|+.....+++..+...  ...+..-...+.-++...|+.+.+.
T Consensus       540 ~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~  614 (963)
T 4ady_A          540 QELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVP  614 (963)
T ss_dssp             GGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred             hHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHH
Confidence            88888888888763   2332 232   3345678899988777788888763  2333333333444445567766666


Q ss_pred             HHHHhCCCCCCHHH--HHHHHHHHHHcCCh-HHHHHHHHHHH
Q 037816          516 SFIERMPVKPDVLV--WQALLGACSIHGDS-EMGKYAAEKLF  554 (648)
Q Consensus       516 ~~~~~~~~~p~~~~--~~~l~~~~~~~g~~-~~A~~~~~~~~  554 (648)
                      ++++.+....|+.+  -..+.-+....|.. .+++..+..+.
T Consensus       615 rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~  656 (963)
T 4ady_A          615 RIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT  656 (963)
T ss_dssp             HHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence            77665522223333  23333333334432 55666666664

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=94.81  E-value=1.6  Score=36.87  Aligned_cols=44  Identities=20%  Similarity=0.489  Sum_probs=20.9

Q ss_pred             hCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 037816          405 KCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEM  450 (648)
Q Consensus       405 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m  450 (648)
                      ..|+++.|.++.+.+  .+...|..|.......|+++-|.+.|.+.
T Consensus        17 ~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~   60 (177)
T 3mkq_B           17 EYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQ   60 (177)
T ss_dssp             HTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             hcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence            444444444444433  23444555555555555555555554443

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=94.62  E-value=0.15  Score=41.31  Aligned_cols=53  Identities=11%  Similarity=0.019  Sum_probs=30.2

Q ss_pred             CChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 037816          541 GDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVD  593 (648)
Q Consensus       541 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~  593 (648)
                      +|.++|.++|+.++.....=+.++...+..-.++|+...|.+++.+....+.+
T Consensus        74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k  126 (161)
T 4h7y_A           74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV  126 (161)
T ss_dssp             HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred             cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence            56666666666665543333444555555555666666666666666655543

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=94.55  E-value=0.065  Score=49.31  Aligned_cols=82  Identities=13%  Similarity=0.151  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHhhhc-----CCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHHc-CC
Q 037816          475 VNKGMEFLKSMTEVHRISPR---AEHYACVVDMVGRA-----GLLIEARSFIERM-PVKPD--VLVWQALLGACSIH-GD  542 (648)
Q Consensus       475 ~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~-g~  542 (648)
                      ...|...++++.+   +.|+   ...|..|...|...     |+.++|.+.|++. .+.|+  ..++......++.. |+
T Consensus       179 l~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd  255 (301)
T 3u64_A          179 VHAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN  255 (301)
T ss_dssp             HHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred             HHHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence            3445555555544   3443   44566666666663     6777777777766 45552  55566666666663 77


Q ss_pred             hHHHHHHHHHHHhcCCC
Q 037816          543 SEMGKYAAEKLFLAQPD  559 (648)
Q Consensus       543 ~~~A~~~~~~~~~~~p~  559 (648)
                      .+.|.+.+++++...|.
T Consensus       256 ~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          256 RAGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHHHHCCGG
T ss_pred             HHHHHHHHHHHHcCCCC
Confidence            77777777777776655

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=93.60  E-value=0.62  Score=49.71  Aligned_cols=54  Identities=17%  Similarity=0.047  Sum_probs=49.7

Q ss_pred             HHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHH
Q 037816          535 GACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMK  588 (648)
Q Consensus       535 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  588 (648)
                      ..|...|+++.|+.+.+++...-|.+-.+|..|+.+|...|+|+.|+-.++.+.
T Consensus       345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence            446778999999999999999999999999999999999999999999998873

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.50  E-value=3.7  Score=41.10  Aligned_cols=114  Identities=7%  Similarity=-0.042  Sum_probs=59.1

Q ss_pred             CCchHHHHHHHHHHHcC----CCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHH-hCCCCChhHHHHHHH----HhHhc
Q 037816          134 GEFDMGFGFFKRSLELG----FYQLDQASFTIILSACDRSELSLVSKMIHCLVYL-CGYEEEVTVGNALIT----SYFKC  204 (648)
Q Consensus       134 g~~~~A~~~~~~m~~~~----~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~----~~~~~  204 (648)
                      |++++|++.+-.+.+..    -.+........++..|...++++........+.+ .|..+..  ...++.    .....
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~~  107 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKSS  107 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhcC
Confidence            56777877776655431    1122233677788888888888887776665543 3322221  222332    22222


Q ss_pred             CChh--HHHHHhcccC---CCCc-------ccHHHHHHHHHHCCCchHHHHHHHHHH
Q 037816          205 GSSS--SGRKVFGEMR---VRNV-------ITWTAVISGLVQNQLYEEGLKLFVKMH  249 (648)
Q Consensus       205 g~~~--~A~~~~~~~~---~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~  249 (648)
                      ...+  .-..+.+...   ..-.       .....|...+...|++.+|.+++..+.
T Consensus       108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~  164 (445)
T 4b4t_P          108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQ  164 (445)
T ss_dssp             CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            2222  2222333222   1111       112455666777777777777777774

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=92.82  E-value=6.2  Score=36.96  Aligned_cols=167  Identities=8%  Similarity=0.052  Sum_probs=97.0

Q ss_pred             HHHHHHHHhHhcCChhHHHHHhcccCCCCcccHHHHHHHHHHCCCchHHHHH----HHHHHhCCCCCChhhHHHHHHHhh
Q 037816          193 VGNALITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKL----FVKMHLGLINPNSLTYLSSVMACS  268 (648)
Q Consensus       193 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~----~~~m~~~~~~p~~~t~~~ll~~~~  268 (648)
                      .|.++..-|.+.+++++|.+++..           -...+.+.|+...|-++    .+...+.+++++......++..+.
T Consensus        35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~  103 (312)
T 2wpv_A           35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA  103 (312)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            456667778888888888877532           23445667777666554    455566788888877777777665


Q ss_pred             ccCChH-HHHHHHHHHH----HhcC--CCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHHc---CC
Q 037816          269 GLQALC-EGRQIHGILW----KLAL--QSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQN---GF  338 (648)
Q Consensus       269 ~~~~~~-~a~~~~~~~~----~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---~~  338 (648)
                      ....-+ .-.++.+.+.    +.|-  .-++.....+...|.+.+++.+|...|-.-...+...+..++.-+...   |.
T Consensus       104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~  183 (312)
T 2wpv_A          104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE  183 (312)
T ss_dssp             TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence            533211 1233333333    3332  236677888899999999999998877533222344444444333332   33


Q ss_pred             HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 037816          339 EEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLII  385 (648)
Q Consensus       339 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  385 (648)
                      ..++--              ..-.. +--+...++...|..+++...
T Consensus       184 ~~e~dl--------------f~~Ra-VL~yL~l~n~~~A~~~~~~f~  215 (312)
T 2wpv_A          184 DSTVAE--------------FFSRL-VFNYLFISNISFAHESKDIFL  215 (312)
T ss_dssp             HHHHHH--------------HHHHH-HHHHHHTTBHHHHHHHHHHHH
T ss_pred             cchHHH--------------HHHHH-HHHHHHhcCHHHHHHHHHHHH
Confidence            222211              11112 223445678888888777654

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=92.79  E-value=0.48  Score=38.48  Aligned_cols=107  Identities=14%  Similarity=0.045  Sum_probs=60.3

Q ss_pred             CHHHHHHHHHHHhccCcH------HHHHHHHHHhHHhcCCCCChh-HHHHHHH------HhhhcCCHHHHHHHHHhC---
Q 037816          458 TDVTFLSLLHACSHVGLV------NKGMEFLKSMTEVHRISPRAE-HYACVVD------MVGRAGLLIEARSFIERM---  521 (648)
Q Consensus       458 ~~~~~~~ll~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~g~~~~A~~~~~~~---  521 (648)
                      |..+|-..+....+.|+.      ++.+++|+++..  .++|+.. .|...|.      .+...++.++|.++|+.+   
T Consensus        12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~   89 (161)
T 4h7y_A           12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN   89 (161)
T ss_dssp             SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            334444444444444444      555566666555  3555321 1111111      122336777777777766   


Q ss_pred             CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHH
Q 037816          522 PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILM  567 (648)
Q Consensus       522 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l  567 (648)
                      .-+- ...|......-.++|+...|.+++.+++.+.|.+...+...
T Consensus        90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a  134 (161)
T 4h7y_A           90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIA  134 (161)
T ss_dssp             CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHH
T ss_pred             hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHH
Confidence            1111 56666666666788999999999999999888765444433

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=92.60  E-value=3.2  Score=32.97  Aligned_cols=141  Identities=11%  Similarity=0.044  Sum_probs=92.6

Q ss_pred             HHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHH
Q 037816          232 LVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDA  311 (648)
Q Consensus       232 ~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  311 (648)
                      +.-.|..++..++..+....   .+..-|+.++.-....-+-+-..++++.   -|--.|..          .+|++...
T Consensus        17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~---IGkiFDis----------~C~NlKrV   80 (172)
T 1wy6_A           17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDK---IGSYFDLD----------KCQNLKSV   80 (172)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHH---HGGGSCGG----------GCSCTHHH
T ss_pred             HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHH---HhhhcCcH----------hhhcHHHH
Confidence            44568888888888887652   4556677777666555555544444433   33333332          23344444


Q ss_pred             HHHHHhccCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCC
Q 037816          312 WQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT  390 (648)
Q Consensus       312 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  390 (648)
                      ...+-.+.. +....+..+..+..+|+-++-.+++..+.. +.+|++.....+..+|.+.|+..++.+++.++-+.|++
T Consensus        81 i~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k  157 (172)
T 1wy6_A           81 VECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK  157 (172)
T ss_dssp             HHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence            443333322 334456667788889999998888888644 34788888899999999999999999999888888754

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=92.50  E-value=14  Score=40.27  Aligned_cols=469  Identities=11%  Similarity=0.047  Sum_probs=222.1

Q ss_pred             HHHHHHHHhccCCCcchhHHHHHHhhhcCC-CCCcCcCCCC-----ChHHHHHHHHHHHhcCCCh--------hHHHHhh
Q 037816           47 ISRLLSISAKEGHFHLGPSLHASFIKTFEP-FDNQNVYNVP-----NATVIWNSLLSFYLKCDQM--------RNAVKLF  112 (648)
Q Consensus        47 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~--------~~A~~~~  112 (648)
                      ...++.-|...+...+|..+.-+..+.  - +++-....+.     .-..++..++.++-..-..        +-+.++|
T Consensus       148 v~~iv~~cl~hnae~~AvdLalE~erL--D~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~p~~fr~~vLr~l~~Iy  225 (963)
T 4ady_A          148 FERMIEKCLKASELKLALGIALEGYRL--DIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSFDFL  225 (963)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTTCH--HHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHhhH--HHHHHHHHhhccccccccHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHH
Confidence            577888899999998888776655432  1 0000000000     1124444455544333222        2356666


Q ss_pred             ccCCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHhhccCChHHHHHHHHHHHHh-------
Q 037816          113 DDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSACDRSELSLVSKMIHCLVYLC-------  185 (648)
Q Consensus       113 ~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------  185 (648)
                      .++..|   -|-.+++++.+.++.+.+.++|+.+...   .+....|...... .+.+.-.-...+.+.+...       
T Consensus       226 ~k~~~~---dy~~a~~~ai~LnD~~li~~if~~l~~~---~d~l~ayQiAFdL-~~~~~Q~fL~~v~~~l~~~e~~~kL~  298 (963)
T 4ady_A          226 MNMPNC---DYLTLNKVVVNLNDAGLALQLFKKLKEE---NDEGLSAQIAFDL-VSSASQQLLEILVTELTAQGYDPALL  298 (963)
T ss_dssp             HHSSSC---CHHHHHHHHHHHTCHHHHHHHHHHHHTT---CCHHHHHHHHHHH-HHHSCHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HhCCch---hHHHHHHHHHHcCCHHHHHHHHHHHHhc---ccHHHHHHHHHHH-hcccchHHHHHHHHhccccchhHHHH
Confidence            666433   4778888899999999999999998742   2333233332222 2222111111121111110       


Q ss_pred             CC---CCChhHHHHHHHHhHhcCC--hhHHHHHhcccCCCCcc--cHHHHHHHHHHCCCchHH-HHHH-HHHHhCCCCCC
Q 037816          186 GY---EEEVTVGNALITSYFKCGS--SSSGRKVFGEMRVRNVI--TWTAVISGLVQNQLYEEG-LKLF-VKMHLGLINPN  256 (648)
Q Consensus       186 ~~---~~~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a-~~~~-~~m~~~~~~p~  256 (648)
                      .+   ......|..++.   +.+.  ...-..+=..+..++..  +-..+.+++...|--... +... ..+.+.   -+
T Consensus       299 ~ILsg~~~~~Lyl~FL~---~~n~~d~~~l~~~K~~ld~r~s~~~~A~~f~Naf~naG~~~D~~l~~~~~Wl~k~---~~  372 (963)
T 4ady_A          299 NILSGLPTCDYYNTFLL---NNKNIDIGLLNKSKSSLDGKFSLFHTAVSVANGFMHAGTTDNSFIKANLPWLGKA---QN  372 (963)
T ss_dssp             HHTTSHHHHHHHHHHHH---HHCCCCHHHHHHHHHHSCTTSHHHHHHHHHHHHHHTTTTCCCHHHHHCHHHHHHC---CT
T ss_pred             HHhCCCChHHHHHHHHH---hccccchhhHHHHHhhhcchhhHHHHHHHHHHHHHhCCCCcchhhhcchhhhhcc---ch
Confidence            00   111222222222   2221  11111110111112211  122455667766644322 2211 112111   11


Q ss_pred             hhhHHH-HHHHhhccCChHHHHHHHHHHHHhc--CCCchhHHHHHHHHHHhcCCHHHHHHHHHhccC-CC--------c-
Q 037816          257 SLTYLS-SVMACSGLQALCEGRQIHGILWKLA--LQSDLCIESALMDMYSKCGSVEDAWQIFEFAEE-LD--------G-  323 (648)
Q Consensus       257 ~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~--------~-  323 (648)
                      -.-+.+ .--+....|+.+++..++...+..+  -.+....-..+.-+...+|..+++.+++..... .+        . 
T Consensus       373 ~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~  452 (963)
T 4ady_A          373 WAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDV  452 (963)
T ss_dssp             HHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHH
T ss_pred             HHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHH
Confidence            111211 2224456677777777666544321  122233444555556666666667776655432 22        1 


Q ss_pred             -ccHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCcCHHHHH--HHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHH
Q 037816          324 -VSMTVILVGFAQNGF-EEEAMQLFVKMVKAGIEIDPNMVS--AVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGL  399 (648)
Q Consensus       324 -~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  399 (648)
                       ..-.++.-+++..|. -+++.+.+..+....- +......  .+-..+...|+.+....++..+.+..   +..+...+
T Consensus       453 ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~a  528 (963)
T 4ady_A          453 LLHGASLGIGLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGL  528 (963)
T ss_dssp             HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHH
Confidence             111223333333332 2456666666655321 1111122  22333557777777788877776532   22333333


Q ss_pred             HHH--HHhCCCHHHHHHHHhhcCC-CC-hhHHH---HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 037816          400 INM--YSKCGDLEDSIKVFSRMAP-RN-SVSWN---SMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHV  472 (648)
Q Consensus       400 i~~--~~~~g~~~~A~~~~~~~~~-~~-~~~~~---~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~  472 (648)
                      ..+  +.-.|+.+.+..+++.+.. .+ ..-|.   ++.-+|+..|+.....++++.+.+.. ..+......+.-++...
T Consensus       529 algLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~  607 (963)
T 4ady_A          529 AVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLL  607 (963)
T ss_dssp             HHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTS
T ss_pred             HHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhcc
Confidence            333  3366777777777666542 23 22333   23446677888777777888887642 22222223333344455


Q ss_pred             CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCH-HHHHHHHHhCCCCCCHHHHHHHHHHH
Q 037816          473 GLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLL-IEARSFIERMPVKPDVLVWQALLGAC  537 (648)
Q Consensus       473 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~p~~~~~~~l~~~~  537 (648)
                      |+.+.+.++++.+.+  ...|....-..+.-+....|.. .+|.+++..+...+|..+-...+.++
T Consensus       608 g~~e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~AL  671 (963)
T 4ady_A          608 RDYTTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIAL  671 (963)
T ss_dssp             SSCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence            666666777766655  2345554444444444444443 67777888774455555544444343

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=91.77  E-value=0.38  Score=47.42  Aligned_cols=69  Identities=20%  Similarity=0.206  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCCc
Q 037816          529 VWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKE-----MGVDKETG  597 (648)
Q Consensus       529 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~  597 (648)
                      ....++.++...|++++++..++.+...+|-+...+..++.+|.+.|+..+|++.|++..+     .|+.|.+.
T Consensus       173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~  246 (388)
T 2ff4_A          173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT  246 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence            3455667788899999999999999999999999999999999999999999999998754     58888764

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=90.65  E-value=1.8  Score=35.88  Aligned_cols=123  Identities=11%  Similarity=0.036  Sum_probs=59.6

Q ss_pred             cCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh-------hHHHHHHHHhhhcCCHHHHHHHHHhC--
Q 037816          453 EGVEPTDV--TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRA-------EHYACVVDMVGRAGLLIEARSFIERM--  521 (648)
Q Consensus       453 ~~~~p~~~--~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~--  521 (648)
                      .|+.|...  ++..-+..+...|.++.|+-+.+.+....+.+|+.       .++..+.+++...|++.+|...|++.  
T Consensus        12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq   91 (167)
T 3ffl_A           12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ   91 (167)
T ss_dssp             ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            34455333  33344555666777777776666654432233331       24455666666666666666666654  


Q ss_pred             --CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHH
Q 037816          522 --PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRM  587 (648)
Q Consensus       522 --~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m  587 (648)
                        +.-+ +..+...+.    .......       -. ..+.+...-..++.+|.+.|++++|+.+++.+
T Consensus        92 ~~k~l~k~~s~~~~~~----~~ss~p~-------s~-~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I  148 (167)
T 3ffl_A           92 QKKALSKTSKVRPSTG----NSASTPQ-------SQ-CLPSEIEVKYKLAECYTVLKQDKDAIAILDGI  148 (167)
T ss_dssp             HHHCC--------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred             HHHHHhcCCCcccccc----ccCCCcc-------cc-cccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence              1101 110000000    0000000       00 01223356778999999999999999998865

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=90.51  E-value=12  Score=35.37  Aligned_cols=168  Identities=14%  Similarity=0.124  Sum_probs=105.7

Q ss_pred             hHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHH----HHHHHcCCCCCHHHHHHHHHHH
Q 037816          394 FVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELY----EEMKLEGVEPTDVTFLSLLHAC  469 (648)
Q Consensus       394 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~----~~m~~~~~~p~~~~~~~ll~~~  469 (648)
                      .+|.++..-|.+.+++++|.+++..           -...+.+.|+...|.++.    +-..+.++++|......++..+
T Consensus        36 Q~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~  104 (336)
T 3lpz_A           36 QETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL  104 (336)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            3556677778889999999988743           234456677776666555    4455678888888888888777


Q ss_pred             hccCc--HHHHHHHHHHhHH---hcCCCC--ChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 037816          470 SHVGL--VNKGMEFLKSMTE---VHRISP--RAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHGD  542 (648)
Q Consensus       470 ~~~g~--~~~A~~~~~~~~~---~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~  542 (648)
                      .....  .+. ..+++++.+   +.|-.|  ++.....+...|.+.|++.+|...|= .+..+.+..+..++..+...+.
T Consensus       105 ~~~~~~~p~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~  182 (336)
T 3lpz_A          105 RLFQPGEPVR-KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDE  182 (336)
T ss_dssp             TTSCTTCHHH-HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSC
T ss_pred             HhCCCCCcHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcC
Confidence            55442  111 222222221   113223  78888899999999999999998884 3444444666556555544433


Q ss_pred             hHHHHHHHHHHHhcCCCCCccHH-HHHHHHHhcCChHHHHHHHHHHHh
Q 037816          543 SEMGKYAAEKLFLAQPDSPAPYI-LMANIYSCSGRWKERAKAIKRMKE  589 (648)
Q Consensus       543 ~~~A~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~  589 (648)
                                     |.+...|. ..+--|.-.|+...|...++...+
T Consensus       183 ---------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~  215 (336)
T 3lpz_A          183 ---------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS  215 (336)
T ss_dssp             ---------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ---------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence                           22222222 233346677899999888777664

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=89.84  E-value=13  Score=34.81  Aligned_cols=168  Identities=10%  Similarity=0.050  Sum_probs=101.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHHcCCHHHHHHH----HHHHHHcCCCcCHHHHHHHHHHHhc
Q 037816          295 ESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQL----FVKMVKAGIEIDPNMVSAVLGVFGV  370 (648)
Q Consensus       295 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~~~~p~~~~~~~ll~~~~~  370 (648)
                      |.++..-|.+.+++++|.+++..-           ...+.+.|++..|.++    ++-..+.+++++......++..+..
T Consensus        36 ~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~  104 (312)
T 2wpv_A           36 LRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE  104 (312)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence            345556688888999988886542           3346677887766664    4555567899999888888888765


Q ss_pred             cCChh-HHHHHHHHHH----HhC--CCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHc---CCh
Q 037816          371 DTSLG-LGKQIHSLII----KSD--FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARH---GNG  440 (648)
Q Consensus       371 ~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~---~~~  440 (648)
                      ...-+ .-..+.+.++    +.|  -.-++.....+...|.+.|++.+|+..|-.-...+...+..++.-+...   |..
T Consensus       105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~  184 (312)
T 2wpv_A          105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIED  184 (312)
T ss_dssp             CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCH
T ss_pred             CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCc
Confidence            43211 1234444444    232  2247788889999999999999999877532222344444443333222   222


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 037816          441 FKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEV  488 (648)
Q Consensus       441 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~  488 (648)
                      .++-              ...-..+ -.|...|+...|..+++...+.
T Consensus       185 ~e~d--------------lf~~RaV-L~yL~l~n~~~A~~~~~~f~~~  217 (312)
T 2wpv_A          185 STVA--------------EFFSRLV-FNYLFISNISFAHESKDIFLER  217 (312)
T ss_dssp             HHHH--------------HHHHHHH-HHHHHTTBHHHHHHHHHHHHHH
T ss_pred             chHH--------------HHHHHHH-HHHHHhcCHHHHHHHHHHHHHH
Confidence            2211              1111122 2345667888898888877653

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.46  E-value=7.9  Score=38.70  Aligned_cols=182  Identities=11%  Similarity=0.134  Sum_probs=116.3

Q ss_pred             CCHHHHHHHHhhcCC---------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----hccC
Q 037816          407 GDLEDSIKVFSRMAP---------RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHAC----SHVG  473 (648)
Q Consensus       407 g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~----~~~g  473 (648)
                      |++++|.+.+-.+.+         ........++..|...|+++...+.+.-+.+..-.. ......+++.+    ....
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~  108 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSK  108 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCC
Confidence            678888887754431         234567778899999999999988887766532222 22233344333    2222


Q ss_pred             cHH--HHHHHHHHhHHhc--CCCC---ChhHHHHHHHHhhhcCCHHHHHHHHHhC-----CCCCC---HHHHHHHHHHHH
Q 037816          474 LVN--KGMEFLKSMTEVH--RISP---RAEHYACVVDMVGRAGLLIEARSFIERM-----PVKPD---VLVWQALLGACS  538 (648)
Q Consensus       474 ~~~--~A~~~~~~~~~~~--~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~---~~~~~~l~~~~~  538 (648)
                      ..+  .-..+.+......  .+-.   .......|...|...|++.+|.+++..+     +..+.   ...+...++.|.
T Consensus       109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l  188 (445)
T 4b4t_P          109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI  188 (445)
T ss_dssp             TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            222  2222222221100  0111   2234467889999999999999999987     22222   345666678899


Q ss_pred             HcCChHHHHHHHHHHHh---cCCCCC----ccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037816          539 IHGDSEMGKYAAEKLFL---AQPDSP----APYILMANIYSCSGRWKERAKAIKRMKE  589 (648)
Q Consensus       539 ~~g~~~~A~~~~~~~~~---~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~  589 (648)
                      ..+|+.+|..+++++..   ..+.++    ..+...+..+...++|.+|-+.|..+.+
T Consensus       189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~  246 (445)
T 4b4t_P          189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ  246 (445)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            99999999999999742   223222    4667888888899999999888877754

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=89.23  E-value=4.5  Score=30.16  Aligned_cols=60  Identities=17%  Similarity=0.087  Sum_probs=46.0

Q ss_pred             CHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHH
Q 037816          510 LLIEARSFIERM---PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMAN  569 (648)
Q Consensus       510 ~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~  569 (648)
                      +.-+..+-++.+   ..-|++....+.+++|.+.+|+..|+++++.+.....+...+|..+++
T Consensus        25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq   87 (109)
T 1v54_E           25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ   87 (109)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence            344444444443   678999999999999999999999999999998766555566776654

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=88.05  E-value=2.4  Score=31.53  Aligned_cols=64  Identities=14%  Similarity=0.242  Sum_probs=51.1

Q ss_pred             ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 037816          439 NGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDM  504 (648)
Q Consensus       439 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~  504 (648)
                      +.-++.+-++.+....+-|++......+++|.+.+++..|.++++.++.+.  .+...+|..+++-
T Consensus        25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~lqE   88 (109)
T 1v54_E           25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQE   88 (109)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHHHH
Confidence            444666777777788899999999999999999999999999999998853  3445667776643

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=87.31  E-value=8.5  Score=43.96  Aligned_cols=64  Identities=5%  Similarity=-0.144  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc-----cHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816          527 VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPA-----PYILMANIYSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       527 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~m~~~  590 (648)
                      ..-|..++..+.+.+.++.++++.+.+++..+.+..     .|..+...+...|++++|...+-.+.+.
T Consensus       899 ~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~  967 (1139)
T 4fhn_B          899 SCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT  967 (1139)
T ss_dssp             HHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH
Confidence            345667777788888888888888888765543322     5667778888888888888888777554

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=87.12  E-value=2  Score=34.02  Aligned_cols=70  Identities=10%  Similarity=-0.005  Sum_probs=41.4

Q ss_pred             CChhHHHHHHHHhhhcCCH---HHHHHHHHhC-CCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc
Q 037816          493 PRAEHYACVVDMVGRAGLL---IEARSFIERM-PVKP--DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPA  562 (648)
Q Consensus       493 ~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~  562 (648)
                      |+..+--.+..++++..+.   .+++.++++. ...|  ....+-.|.-++.+.|++++|.++.+.+++..|.|..
T Consensus        38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q  113 (134)
T 3o48_A           38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ  113 (134)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred             CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence            3444444444555554432   3455555544 2223  2444555666788888888888888888888888753

>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A

Probab=86.91  E-value=33  Score=35.98  Aligned_cols=20  Identities=20%  Similarity=0.037  Sum_probs=14.3

Q ss_pred             hhcCCHHHHHHHHHhCCCCC
Q 037816          506 GRAGLLIEARSFIERMPVKP  525 (648)
Q Consensus       506 ~~~g~~~~A~~~~~~~~~~p  525 (648)
                      ...|+++.|++.+++.++-|
T Consensus       549 ~~~g~~~~AL~~i~~L~llP  568 (661)
T 2qx5_A          549 YFNKQWQETLSQMELLDLLP  568 (661)
T ss_dssp             HHTTCHHHHHHHHHHTSCSC
T ss_pred             HHcCCHHHHHHHHHhCCCCC
Confidence            56777777777777775555

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=86.02  E-value=3.5  Score=33.17  Aligned_cols=71  Identities=10%  Similarity=0.003  Sum_probs=46.6

Q ss_pred             CCChhHHHHHHHHhhhcCCH---HHHHHHHHhC-CCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc
Q 037816          492 SPRAEHYACVVDMVGRAGLL---IEARSFIERM-PVKP--DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPA  562 (648)
Q Consensus       492 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~  562 (648)
                      .|+..+--.+..++++..+.   .+++.++++. ...|  .....-.|.-++.+.|++++|.++.+.+++..|.|..
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q  112 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ  112 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence            34555555555566555543   3455555555 2233  2344455666899999999999999999999999853

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=85.80  E-value=12  Score=42.82  Aligned_cols=163  Identities=9%  Similarity=0.011  Sum_probs=89.8

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChh
Q 037816          296 SALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLG  375 (648)
Q Consensus       296 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~  375 (648)
                      ..++..+.+.+..+-+.++...... ++..--.+..++...|++++|.+.|++... |+..+....          ....
T Consensus       816 ~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~----------~~~~  883 (1139)
T 4fhn_B          816 TELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQF----------AVLR  883 (1139)
T ss_dssp             HHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSC----------SSHH
T ss_pred             HHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhh----------hhhc
Confidence            3455666677777777766555443 443344566778888999999998876521 221110000          0000


Q ss_pred             HHHHHHHHHHHhC--CCCchhHHHHHHHHHHhCCCHHHHHHHHhhc----CCCC----hhHHHHHHHHHHHcCChHHHHH
Q 037816          376 LGKQIHSLIIKSD--FTSNPFVNNGLINMYSKCGDLEDSIKVFSRM----APRN----SVSWNSMIAAFARHGNGFKALE  445 (648)
Q Consensus       376 ~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~----~~~~~~l~~~~~~~~~~~~A~~  445 (648)
                      .    +..+....  ...-..-|.-++..+.+.+.++.+.++-...    .+.+    ...|..+.+++...|++++|..
T Consensus       884 ~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~  959 (1139)
T 4fhn_B          884 E----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHV  959 (1139)
T ss_dssp             H----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGH
T ss_pred             c----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHH
Confidence            0    01111110  1112234555666666666666665554322    1222    1257778888888888888888


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHhccCcHH
Q 037816          446 LYEEMKLEGVEPTDVTFLSLLHACSHVGLVN  476 (648)
Q Consensus       446 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~  476 (648)
                      .+-.+.....  -...+..|+..+|..|..+
T Consensus       960 aL~~~pd~~~--r~~cLr~LV~~lce~~~~~  988 (1139)
T 4fhn_B          960 ALMVLSTTPL--KKSCLLDFVNQLTKQGKIN  988 (1139)
T ss_dssp             HHHHHHHSSS--CHHHHHHHHHHHHHHCCHH
T ss_pred             HHHhCCCHHH--HHHHHHHHHHHHHhCCChh
Confidence            8877766432  3455666777666666544

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=85.62  E-value=9.2  Score=28.37  Aligned_cols=86  Identities=9%  Similarity=-0.050  Sum_probs=56.9

Q ss_pred             ChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 037816          272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVK  351 (648)
Q Consensus       272 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  351 (648)
                      .-++|..|-+.+...+.  ...+-.+-+..+...|++++|..+.+...-||..+|-+|-.  .+.|..+++...+.++..
T Consensus        22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~   97 (116)
T 2p58_C           22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR   97 (116)
T ss_dssp             CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence            45566666666655543  33333444556677888999988888888888888876654  366777777777777766


Q ss_pred             cCCCcCHHHHH
Q 037816          352 AGIEIDPNMVS  362 (648)
Q Consensus       352 ~~~~p~~~~~~  362 (648)
                      .| .|....|.
T Consensus        98 sg-~p~~q~Fa  107 (116)
T 2p58_C           98 SQ-DPRIQTFV  107 (116)
T ss_dssp             CC-CHHHHHHH
T ss_pred             CC-CHHHHHHH
Confidence            65 45444443

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=85.46  E-value=8.6  Score=28.48  Aligned_cols=87  Identities=10%  Similarity=-0.062  Sum_probs=58.1

Q ss_pred             ChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 037816          272 ALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVK  351 (648)
Q Consensus       272 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  351 (648)
                      .-++|..|-+.+...+.  ...+-.+-+..+...|++++|..+.+...-||..+|-+|-.  .+.|..+++...+.++..
T Consensus        21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~   96 (115)
T 2uwj_G           21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG   96 (115)
T ss_dssp             CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence            45566666666655543  33333444556677888999988888888888888876654  477777888888877777


Q ss_pred             cCCCcCHHHHHH
Q 037816          352 AGIEIDPNMVSA  363 (648)
Q Consensus       352 ~~~~p~~~~~~~  363 (648)
                      .| .|....|..
T Consensus        97 sg-~p~~q~Fa~  107 (115)
T 2uwj_G           97 SS-DPALADFAA  107 (115)
T ss_dssp             CS-SHHHHHHHH
T ss_pred             CC-CHHHHHHHH
Confidence            66 455544443

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=84.92  E-value=6.1  Score=38.71  Aligned_cols=69  Identities=12%  Similarity=0.102  Sum_probs=46.0

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHh----cCCCCChhH
Q 037816          428 NSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEV----HRISPRAEH  497 (648)
Q Consensus       428 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~  497 (648)
                      ..++..+...|++++|+..+..+.... +-+...+..+|.++...|+..+|++.|+...+.    .|+.|+..+
T Consensus       175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l  247 (388)
T 2ff4_A          175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  247 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence            335556667777777777777776643 346677777777777777777777777776442    355665544

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=84.60  E-value=31  Score=33.56  Aligned_cols=162  Identities=10%  Similarity=-0.020  Sum_probs=0.0

Q ss_pred             hHHHHHHHHHHhCCCHHHHHHHHhhcCC--------CChhHHHHHHHHHHH-cCChHHHHHHHHHHHHcCCCCCHHHHH-
Q 037816          394 FVNNGLINMYSKCGDLEDSIKVFSRMAP--------RNSVSWNSMIAAFAR-HGNGFKALELYEEMKLEGVEPTDVTFL-  463 (648)
Q Consensus       394 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~-~~~~~~A~~~~~~m~~~~~~p~~~~~~-  463 (648)
                      .....|...|.+.|+.++..+++....+        ........++..+.. .+..+.-.++..+..+-.-.-...-+. 
T Consensus        20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~   99 (394)
T 3txn_A           20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ   99 (394)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             ----HHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHhhhcCCHHHHHHHHHhC-----CCCCCHHHH
Q 037816          464 ----SLLHACSHVGLVNKGMEFLKSMTEVHRISPR----AEHYACVVDMVGRAGLLIEARSFIERM-----PVKPDVLVW  530 (648)
Q Consensus       464 ----~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~~~~~  530 (648)
                          .++..|...|++.+|..++.++.+...-..+    ..++..-++.|...|++.++...+...     .+.|++...
T Consensus       100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~  179 (394)
T 3txn_A          100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ  179 (394)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH


Q ss_pred             HHHHHH----HH-HcCChHHHHHHHHHHHh
Q 037816          531 QALLGA----CS-IHGDSEMGKYAAEKLFL  555 (648)
Q Consensus       531 ~~l~~~----~~-~~g~~~~A~~~~~~~~~  555 (648)
                      ..+-.+    +. ..+++..|-..|-++.+
T Consensus       180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~  209 (394)
T 3txn_A          180 GALDLQSGILHAADERDFKTAFSYFYEAFE  209 (394)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHhccCHHHHHHHHHHHHh

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=84.29  E-value=28  Score=32.82  Aligned_cols=166  Identities=16%  Similarity=0.126  Sum_probs=101.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHHcCCHHHHHHHH----HHHHHcCCCcCHHHHHHHHHHHhcc
Q 037816          296 SALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLF----VKMVKAGIEIDPNMVSAVLGVFGVD  371 (648)
Q Consensus       296 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~----~~m~~~~~~p~~~~~~~ll~~~~~~  371 (648)
                      .++..-|.+.+++++|.+++..-           ...+.+.|+...+.++-    +-..+.++++|..+...++..+...
T Consensus        39 RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~  107 (336)
T 3lpz_A           39 RLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLF  107 (336)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence            45556688889999988876432           33466777776665554    5556678899998888888888766


Q ss_pred             CChh-HHHHHHHHHH----HhC--CCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHH
Q 037816          372 TSLG-LGKQIHSLII----KSD--FTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKAL  444 (648)
Q Consensus       372 ~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  444 (648)
                      ..-+ .-..+.+.++    +.|  -.-++.....+...|.+.+++.+|+.-|-.-..+....|..++.-+...+...+  
T Consensus       108 ~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e--  185 (336)
T 3lpz_A          108 QPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT--  185 (336)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG--
T ss_pred             CCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc--
Confidence            5422 1133344443    233  345677888899999999999999988853222233455444433333222111  


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 037816          445 ELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTE  487 (648)
Q Consensus       445 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~  487 (648)
                                  ++...-..++ .|...++...|..+++...+
T Consensus       186 ------------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~  215 (336)
T 3lpz_A          186 ------------APLYCARAVL-PYLLVANVRAANTAYRIFTS  215 (336)
T ss_dssp             ------------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred             ------------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence                        1222222233 35556788888887776654

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=84.01  E-value=10  Score=29.99  Aligned_cols=50  Identities=16%  Similarity=0.090  Sum_probs=41.9

Q ss_pred             hCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHH
Q 037816          520 RMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMAN  569 (648)
Q Consensus       520 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~  569 (648)
                      .+.+-|++....+.+++|.+.+|+..|+++++.+.....+...+|..+++
T Consensus        81 ~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq  130 (152)
T 2y69_E           81 GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ  130 (152)
T ss_dssp             TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred             ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence            34678999999999999999999999999999998776555667776654

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=83.60  E-value=20  Score=30.71  Aligned_cols=49  Identities=10%  Similarity=0.051  Sum_probs=22.1

Q ss_pred             ChHHHHHHHHHHHhcCCChhHHHHhhccCCCCCcccHHHHHHHHHhcCC
Q 037816           87 NATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGE  135 (648)
Q Consensus        87 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~  135 (648)
                      ++..+-...+.++.+.|+.+....+.+.+..++...-...+.++...|+
T Consensus        26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~   74 (201)
T 3ltj_A           26 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGD   74 (201)
T ss_dssp             SCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence            3444444444444444443434444444444444444444445544444

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=82.79  E-value=7  Score=32.41  Aligned_cols=26  Identities=4%  Similarity=-0.130  Sum_probs=14.3

Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHhH
Q 037816          461 TFLSLLHACSHVGLVNKGMEFLKSMT  486 (648)
Q Consensus       461 ~~~~ll~~~~~~g~~~~A~~~~~~~~  486 (648)
                      ++..+.+++...+++.+|...|++..
T Consensus        65 ~l~~ladalf~~~eyrrA~~~y~qAL   90 (167)
T 3ffl_A           65 LLVYHADSLFHDKEYRNAVSKYTMAL   90 (167)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            34444555555666666666665543

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=82.76  E-value=27  Score=31.65  Aligned_cols=120  Identities=14%  Similarity=0.037  Sum_probs=68.2

Q ss_pred             HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChh----HHHHHHHHhhhc
Q 037816          433 AFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAE----HYACVVDMVGRA  508 (648)
Q Consensus       433 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~  508 (648)
                      .+.+.|+.++|++....-++.. +-|...-..++..+|-.|++++|.+-++...+.   .|+..    +|..+|.+=.  
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~aE~--   79 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQ--   79 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHH--
T ss_pred             HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHHHH--
Confidence            4456777888887777777654 336666666777788888888888777777653   34332    3333332211  


Q ss_pred             CCHHHHHHHHHhC---C-CCCCHHHHHHHHHHH--HHcCChHHHHHHHHHHHhcCCCCCc
Q 037816          509 GLLIEARSFIERM---P-VKPDVLVWQALLGAC--SIHGDSEMGKYAAEKLFLAQPDSPA  562 (648)
Q Consensus       509 g~~~~A~~~~~~~---~-~~p~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~p~~~~  562 (648)
                        ..  .++|.--   + +.....-...++.+.  ...|+.++|.++-+++.+.-|..+.
T Consensus        80 --~R--~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G  135 (273)
T 1zbp_A           80 --AR--KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF  135 (273)
T ss_dssp             --HH--HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred             --HH--HHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence              00  0122111   0 111222334444443  3458888888888888777766554

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=82.74  E-value=49  Score=34.48  Aligned_cols=338  Identities=8%  Similarity=-0.076  Sum_probs=174.9

Q ss_pred             CChHHHHHHHHHHHhcCCChhHHHHhhccCCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHH
Q 037816           86 PNATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSA  165 (648)
Q Consensus        86 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~  165 (648)
                      |.....-+.-+..+.+.+++...+.++.. ...+...--....+....|+..+|......+-..|... .. .+..++..
T Consensus        69 p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~-p~-~c~~l~~~  145 (618)
T 1qsa_A           69 PPARTLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQ-PN-ACDKLFSV  145 (618)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCC-CT-HHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-cH-HHHHHHHH
Confidence            44556667778888899999999998887 42344333345677788899888888888888777322 22 56666666


Q ss_pred             hhccCChHHHH--HHHHHHHHhC-----------CCCChh-HHHHHHHHhHhcCChhHHHHHhcccCCCCcc---cHHHH
Q 037816          166 CDRSELSLVSK--MIHCLVYLCG-----------YEEEVT-VGNALITSYFKCGSSSSGRKVFGEMRVRNVI---TWTAV  228 (648)
Q Consensus       166 ~~~~~~~~~a~--~~~~~~~~~~-----------~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l  228 (648)
                      +...|.+....  .=.+.+...|           ++++.. ....++..+   .+...+....... .++..   .+...
T Consensus       146 ~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~---~~p~~~~~~~~~~-~~~~~~~~~~~~~  221 (618)
T 1qsa_A          146 WRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLA---NNPNTVLTFARTT-GATDFTRQMAAVA  221 (618)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHH---HCGGGHHHHHHHS-CCCHHHHHHHHHH
T ss_pred             HHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHH---hChHhHHHHHhcc-CCChhhHHHHHHH
Confidence            66554332221  1111111111           111111 011111111   1112222222111 11111   11112


Q ss_pred             HHHHHHCCCchHHHHHHHHHHhCCCCCChhhH----HHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHh
Q 037816          229 ISGLVQNQLYEEGLKLFVKMHLGLINPNSLTY----LSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSK  304 (648)
Q Consensus       229 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  304 (648)
                      +.-+.+ .+++.|...|....... ..+....    ..+.......+...++...+.......  .+.....-.+....+
T Consensus       222 ~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr  297 (618)
T 1qsa_A          222 FASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALG  297 (618)
T ss_dssp             HHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHH
T ss_pred             HHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHH
Confidence            233333 37899999998886433 2233222    223333344453555555555543332  333334444555667


Q ss_pred             cCCHHHHHHHHHhccCCC---cccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHH
Q 037816          305 CGSVEDAWQIFEFAEELD---GVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIH  381 (648)
Q Consensus       305 ~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~  381 (648)
                      .|+++.|...|+.|....   ....--+..++...|+.++|..+|+.+...   .+  .|..+..  .+.|..-..    
T Consensus       298 ~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~~--fYg~lAa--~~Lg~~~~~----  366 (618)
T 1qsa_A          298 TGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--FYPMVAA--QRIGEEYEL----  366 (618)
T ss_dssp             HTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--HHHHHHH--HHTTCCCCC----
T ss_pred             CCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CC--hHHHHHH--HHcCCCCCC----
Confidence            899999999999998742   222333556778899999999999998642   22  2333321  122211000    


Q ss_pred             HHHHHhCCCCc-h-----hHHHHHHHHHHhCCCHHHHHHHHhhcCC-CChhHHHHHHHHHHHcCChHHHHHHHH
Q 037816          382 SLIIKSDFTSN-P-----FVNNGLINMYSKCGDLEDSIKVFSRMAP-RNSVSWNSMIAAFARHGNGFKALELYE  448 (648)
Q Consensus       382 ~~~~~~~~~~~-~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~  448 (648)
                         .....++. .     ......+..+...|....|...+..+.+ .+......+.......|.++.++....
T Consensus       367 ---~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~  437 (618)
T 1qsa_A          367 ---KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATI  437 (618)
T ss_dssp             ---CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ---CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence               00000010 0     0111234556778888888887776543 333333344444456677777665543

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=82.49  E-value=5.5  Score=31.49  Aligned_cols=63  Identities=14%  Similarity=0.234  Sum_probs=50.8

Q ss_pred             hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 037816          440 GFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDM  504 (648)
Q Consensus       440 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~  504 (648)
                      .-+..+-++.+...++-|++......+++|.+.+++..|.++|+-++.+  ..+...+|..+++-
T Consensus        69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lqE  131 (152)
T 2y69_E           69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQE  131 (152)
T ss_dssp             HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHHH
Confidence            3456666777777889999999999999999999999999999999885  44456677777643

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=80.60  E-value=7.6  Score=41.48  Aligned_cols=127  Identities=13%  Similarity=0.113  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHhCCC-HHHHHHHHhhcCCCCh--hHH--HHHHHHHHHcC-ChHHHHHHHHHHHHc------CCCC-CHHH
Q 037816          395 VNNGLINMYSKCGD-LEDSIKVFSRMAPRNS--VSW--NSMIAAFARHG-NGFKALELYEEMKLE------GVEP-TDVT  461 (648)
Q Consensus       395 ~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~--~~~--~~l~~~~~~~~-~~~~A~~~~~~m~~~------~~~p-~~~~  461 (648)
                      ....++..+...++ .+.|..+|+++...++  ..+  ..++..+...+ +--+|.+++.+..+.      ...+ +...
T Consensus       250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~  329 (754)
T 4gns_B          250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS  329 (754)
T ss_dssp             HHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred             HHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence            34455555555666 4778888887764322  222  22222222222 233566666665431      1222 1110


Q ss_pred             -----H-HHHH----HHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCC
Q 037816          462 -----F-LSLL----HACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPV  523 (648)
Q Consensus       462 -----~-~~ll----~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  523 (648)
                           + ..|+    .-|...|+++.|+.+-++....  .+-+..+|..|..+|...|+++.|+-.++.++.
T Consensus       330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScPm  399 (754)
T 4gns_B          330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMPR  399 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred             ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCCC
Confidence                 0 1122    3355678888888888888762  334678888888888888888888888888853

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	648
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.002

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (101), Expect = 5e-05
 Identities = 27/200 (13%), Positives = 61/200 (30%), Gaps = 8/200 (4%)

Query: 392 NPFVNNGLINMYSKCGDLEDSIKVFSR---MAPRNSVSWNSMIAAFARHGNGFKALELYE 448
                + L  +++  G++  +I  F +   + P    ++ ++           +A+  Y 
Sbjct: 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYL 227

Query: 449 EMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRA 508
                          +L       GL++  ++  +   E+    P A  Y  + + +   
Sbjct: 228 RALSLSPNHAV-VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDA--YCNLANALKEK 284

Query: 509 GLLIEARSFIER--MPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYIL 566
           G + EA                    L       G+ E       K     P+  A +  
Sbjct: 285 GSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSN 344

Query: 567 MANIYSCSGRWKERAKAIKR 586
           +A++    G+ +E     K 
Sbjct: 345 LASVLQQQGKLQEALMHYKE 364

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 40/348 (11%), Positives = 87/348 (25%), Gaps = 15/348 (4%)

Query: 232 LVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSD 291
             Q +  +              NP      S+ +     +       I      L L+ D
Sbjct: 43  HFQCRRLDRSAHFSTLAIK--QNPLLAEAYSN-LGNVYKERGQLQEAIEHYRHALRLKPD 99

Query: 292 LCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVK 351
                  +          +       +       +  +             ++       
Sbjct: 100 FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYL 159

Query: 352 AGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKS--DFTSNPFVNNGLINMYSKCGDL 409
             IE  PN   A   +  V  + G          K+     +       L N+  +    
Sbjct: 160 KAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIF 219

Query: 410 EDSIKVFSR---MAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLL 466
           + ++  + R   ++P ++V   ++   +   G    A++ Y   +   ++P        L
Sbjct: 220 DRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYR--RAIELQPHFPDAYCNL 277

Query: 467 HACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMV-GRAGLLIEARSFIER-MPVK 524
                        E         R+ P        +  +    G + EA     + + V 
Sbjct: 278 ANALK--EKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF 335

Query: 525 PDVLVWQALLGACSIH-GDSEMGKYAAEKLFLAQPDSPAPYILMANIY 571
           P+     + L +     G  +      ++     P     Y  M N  
Sbjct: 336 PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 383

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	648
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.9
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.9
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.58
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.56
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.15
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.09
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.06
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.01
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.01
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.01
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.99
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.99
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.95
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.79
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.62
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.59
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.58
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.54
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.54
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.54
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.53
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.48
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.45
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.42
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.36
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.35
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.34
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.33
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.28
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.24
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.19
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.12
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.11
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.1
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.09
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.07
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.04
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.01
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.99
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.98
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.9
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.83
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.82
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.72
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.7
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.64
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.54
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.44
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.37
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.33
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.32
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.25
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.18
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.14
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	96.84
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	96.74
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	95.87
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	95.46
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	93.56
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	92.6
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	92.2
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	92.08
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	89.23
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	87.61

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.3e-20  Score=188.43  Aligned_cols=247  Identities=14%  Similarity=0.106  Sum_probs=198.2

Q ss_pred             cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 037816          325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYS  404 (648)
Q Consensus       325 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  404 (648)
                      ............+....+...+.+..... +.+...+..+...+...|+.+.|...++...+.. +.+...+..+...+.
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~  214 (388)
T d1w3ba_         137 VRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLK  214 (388)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             ccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhh
Confidence            33444455556666677777766666543 3445666667777778888888888887777654 455667778888888


Q ss_pred             hCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 037816          405 KCGDLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEF  481 (648)
Q Consensus       405 ~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~  481 (648)
                      ..|++++|...+....   ..+...+..+...+.+.|++++|+..|++..+.. +-+..++..+..++...|++++|.+.
T Consensus       215 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~  293 (388)
T d1w3ba_         215 EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDC  293 (388)
T ss_dssp             TTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             ccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            8888888888887654   3466777888888999999999999999988854 23567888889999999999999999


Q ss_pred             HHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 037816          482 LKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPD-VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD  559 (648)
Q Consensus       482 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  559 (648)
                      ++.....  .+.+...+..+...+.+.|++++|++.|++. ...|+ ..++..+..+|...|++++|+..++++++.+|+
T Consensus       294 ~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~  371 (388)
T d1w3ba_         294 YNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT  371 (388)
T ss_dssp             HHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred             HHhhhcc--CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            9998873  5567888899999999999999999999987 66665 677888999999999999999999999999999


Q ss_pred             CCccHHHHHHHHHhcCC
Q 037816          560 SPAPYILMANIYSCSGR  576 (648)
Q Consensus       560 ~~~~~~~l~~~~~~~g~  576 (648)
                      ++.+|..++.+|.+.|+
T Consensus       372 ~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         372 FADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             CHHHHHHHHHHHHHTCC
T ss_pred             CHHHHHHHHHHHHHcCC
Confidence            99999999999988885

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.8e-20  Score=185.08  Aligned_cols=354  Identities=14%  Similarity=0.077  Sum_probs=277.0

Q ss_pred             HHHHHHCCCchHHHHHHHHHHhCCCCC-ChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCC
Q 037816          229 ISGLVQNQLYEEGLKLFVKMHLGLINP-NSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGS  307 (648)
Q Consensus       229 i~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  307 (648)
                      ...+.+.|++++|++.|+++.+.  .| +...+..+...+...|++++|...++.+.+.. +.+..++..+..+|.+.|+
T Consensus         6 a~~~~~~G~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~   82 (388)
T d1w3ba_           6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ   82 (388)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcc
Confidence            34556667777777777777553  24 34456666666777777777777777776654 3455677788888888888


Q ss_pred             HHHHHHHHHhccCC---CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHH
Q 037816          308 VEDAWQIFEFAEEL---DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLI  384 (648)
Q Consensus       308 ~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~  384 (648)
                      +++|.+.+......   +...+..........+....+........... .................+....+...+...
T Consensus        83 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (388)
T d1w3ba_          83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA  161 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHh
Confidence            88888888777653   22333344445555666666666666655554 334444445555666777788888877777


Q ss_pred             HHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH
Q 037816          385 IKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVT  461 (648)
Q Consensus       385 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~  461 (648)
                      .... +.+...+..+...+...|++++|...+++..   +.+...|..+...+...|++++|+..+++....+ +.+...
T Consensus       162 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~  239 (388)
T d1w3ba_         162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV  239 (388)
T ss_dssp             HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred             hccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHH
Confidence            7654 5566788888999999999999999998764   3467789999999999999999999999998865 456778


Q ss_pred             HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHH
Q 037816          462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM--PVKPDVLVWQALLGACSI  539 (648)
Q Consensus       462 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~  539 (648)
                      +..+...+...|++++|...|+++.+.  .+.+..++..+...+...|++++|.+.++..  ..+.+...+..+...+..
T Consensus       240 ~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  317 (388)
T d1w3ba_         240 HGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE  317 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHH
Confidence            888889999999999999999999873  3447788999999999999999999999987  334567888899999999


Q ss_pred             cCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816          540 HGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       540 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  590 (648)
                      .|++++|+..++++++..|+++.++..++.+|...|++++|++.+++..+.
T Consensus       318 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l  368 (388)
T d1w3ba_         318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI  368 (388)
T ss_dssp             TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999998763

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.1e-13  Score=133.89  Aligned_cols=241  Identities=12%  Similarity=-0.005  Sum_probs=170.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC
Q 037816          328 VILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCG  407 (648)
Q Consensus       328 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  407 (648)
                      .....+.+.|++++|+..|++..+.. +-+..+|..+..++...|+++.|...+..+.+.. |.+...+..+...|...|
T Consensus        24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~  101 (323)
T d1fcha_          24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES  101 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence            35566888889999999998888764 3356677777777777778888877777777654 345566666666777777


Q ss_pred             CHHHHHHHHhhcCC--CCh-hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 037816          408 DLEDSIKVFSRMAP--RNS-VSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKS  484 (648)
Q Consensus       408 ~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~  484 (648)
                      ++++|.+.++....  |+. ..+.......                    ...+.......+..+...+.+.+|...+.+
T Consensus       102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  161 (323)
T d1fcha_         102 LQRQACEILRDWLRYTPAYAHLVTPAEEGA--------------------GGAGLGPSKRILGSLLSDSLFLEVKELFLA  161 (323)
T ss_dssp             CHHHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccchhhHHHhccchHHHHHhhhhhh--------------------hhcccccchhhHHHHHHhhHHHHHHHHHHH
Confidence            77777766665431  110 0000000000                    000001111122233455677788888888


Q ss_pred             hHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc
Q 037816          485 MTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPA  562 (648)
Q Consensus       485 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~  562 (648)
                      +.+...-.++..++..+...+...|++++|+..+++. ...| +...|..+..++...|++++|++.++++++.+|.++.
T Consensus       162 al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  241 (323)
T d1fcha_         162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR  241 (323)
T ss_dssp             HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHH
Confidence            8765333446777888899999999999999999987 4444 4778889999999999999999999999999999999


Q ss_pred             cHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816          563 PYILMANIYSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       563 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~  590 (648)
                      ++..++.+|.+.|++++|++.|++.++.
T Consensus       242 a~~~lg~~~~~~g~~~~A~~~~~~al~l  269 (323)
T d1fcha_         242 SRYNLGISCINLGAHREAVEHFLEALNM  269 (323)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            9999999999999999999999998873

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=3e-13  Score=130.71  Aligned_cols=266  Identities=11%  Similarity=-0.024  Sum_probs=197.0

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhccCC---CcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccC
Q 037816          296 SALMDMYSKCGSVEDAWQIFEFAEEL---DGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDT  372 (648)
Q Consensus       296 ~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~  372 (648)
                      -.....+.+.|++++|...|+.+.+.   ++.+|..+..++...|++++|...|.+..+.. +-+...+..+...+...|
T Consensus        23 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~  101 (323)
T d1fcha_          23 FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES  101 (323)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence            34667789999999999999998763   45678889999999999999999999998864 446778888889999999


Q ss_pred             ChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037816          373 SLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKL  452 (648)
Q Consensus       373 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~  452 (648)
                      +++.|.+.++.+...... ............                ...+.......+..+...+.+.+|...+.+..+
T Consensus       102 ~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~  164 (323)
T d1fcha_         102 LQRQACEILRDWLRYTPA-YAHLVTPAEEGA----------------GGAGLGPSKRILGSLLSDSLFLEVKELFLAAVR  164 (323)
T ss_dssp             CHHHHHHHHHHHHHTSTT-TGGGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccchhhHHHhccc-hHHHHHhhhhhh----------------hhcccccchhhHHHHHHhhHHHHHHHHHHHHHH
Confidence            999999999998865421 111100000000                000111111122334455667888888888876


Q ss_pred             cCC-CCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHH
Q 037816          453 EGV-EPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLV  529 (648)
Q Consensus       453 ~~~-~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~  529 (648)
                      ... .++...+..+...+...|++++|...+++....  .+-+...|..+...|.+.|++++|.+.|++. ...| +...
T Consensus       165 ~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a  242 (323)
T d1fcha_         165 LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRS  242 (323)
T ss_dssp             HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HhhcccccccchhhHHHHHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHH
Confidence            432 235677888888999999999999999999874  2346888999999999999999999999987 4455 4778


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcc-----------HHHHHHHHHhcCChHHHH
Q 037816          530 WQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP-----------YILMANIYSCSGRWKERA  581 (648)
Q Consensus       530 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----------~~~l~~~~~~~g~~~~A~  581 (648)
                      |..+..+|.+.|++++|+..|+++++..|.+...           +..+..++...|+.+.+.
T Consensus       243 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~  305 (323)
T d1fcha_         243 RYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG  305 (323)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            9999999999999999999999999988876543           445666777777766554

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.15  E-value=4.8e-09  Score=101.79  Aligned_cols=194  Identities=10%  Similarity=-0.009  Sum_probs=121.3

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHhhcC-------CC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC----CCCHH
Q 037816          396 NNGLINMYSKCGDLEDSIKVFSRMA-------PR----NSVSWNSMIAAFARHGNGFKALELYEEMKLEGV----EPTDV  460 (648)
Q Consensus       396 ~~~li~~~~~~g~~~~A~~~~~~~~-------~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~----~p~~~  460 (648)
                      +..+...+...|++..+...+....       .+    ....+..+...+...|+++.+...+........    .....
T Consensus        94 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  173 (366)
T d1hz4a_          94 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ  173 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHH
Confidence            3344455566666666665554432       11    112444556667777888888777777665321    12234


Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-----ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-----CHHH
Q 037816          461 TFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP-----RAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-----DVLV  529 (648)
Q Consensus       461 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-----~~~~  529 (648)
                      .+......+...+++..+...+.+......-..     ....+..+...+...|++++|...+++. ...|     ....
T Consensus       174 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  253 (366)
T d1hz4a_         174 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ  253 (366)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHH
Confidence            455555666777777777777766654321111     1234555666777888888888888776 2221     2445


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHh------cCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037816          530 WQALLGACSIHGDSEMGKYAAEKLFL------AQPDSPAPYILMANIYSCSGRWKERAKAIKRMKE  589 (648)
Q Consensus       530 ~~~l~~~~~~~g~~~~A~~~~~~~~~------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  589 (648)
                      +..+..++...|++++|...+++++.      ..|....++..++.+|.+.|++++|.+.+++..+
T Consensus       254 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~  319 (366)
T d1hz4a_         254 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  319 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            56677778888888888888887763      2244456777888888888888888888887755

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.09  E-value=1.4e-09  Score=100.55  Aligned_cols=221  Identities=9%  Similarity=-0.036  Sum_probs=136.9

Q ss_pred             HHHHHHHHHHHHHcCC-Cc--CHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHH
Q 037816          339 EEEAMQLFVKMVKAGI-EI--DPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKV  415 (648)
Q Consensus       339 ~~~a~~~~~~m~~~~~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  415 (648)
                      .+.++..+++...... .+  ...++..+..++.+.|+++.|...|+...+.. |.++.+|..+..+|.+.|++++|+..
T Consensus        15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~   93 (259)
T d1xnfa_          15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEA   93 (259)
T ss_dssp             HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhh
Confidence            3455555555554321 11  12345555666777777777777777777664 55677788888888888888888888


Q ss_pred             HhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC
Q 037816          416 FSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRIS  492 (648)
Q Consensus       416 ~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~  492 (648)
                      |+++.   +.+..++..+..+|...|++++|...+++..+.. +.+......+..++.+.+..+.+..+......   ..
T Consensus        94 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  169 (259)
T d1xnfa_          94 FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK---SD  169 (259)
T ss_dssp             HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---SC
T ss_pred             hhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc---cc
Confidence            88765   3356678888888888999999999999888754 23444444444445555555555555554443   22


Q ss_pred             CChhHHHHHHHHhhhcCC----HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHH
Q 037816          493 PRAEHYACVVDMVGRAGL----LIEARSFIERM-PVKPD-VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYI  565 (648)
Q Consensus       493 ~~~~~~~~l~~~~~~~g~----~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~  565 (648)
                      +....+. ++..+.....    .+.+...+... ...|+ ..+|..+...+...|++++|+..|++++..+|++...|.
T Consensus       170 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  247 (259)
T d1xnfa_         170 KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR  247 (259)
T ss_dssp             CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred             hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence            2222222 2223222222    22222222211 11232 345667888899999999999999999999998765554

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.06  E-value=1.4e-08  Score=98.29  Aligned_cols=283  Identities=8%  Similarity=-0.051  Sum_probs=172.8

Q ss_pred             HHHHhcCCHHHHHHHHHhccC--CC------cccHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcC----HHHHHHHHH
Q 037816          300 DMYSKCGSVEDAWQIFEFAEE--LD------GVSMTVILVGFAQNGFEEEAMQLFVKMVKAGI-EID----PNMVSAVLG  366 (648)
Q Consensus       300 ~~~~~~~~~~~A~~~~~~~~~--~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll~  366 (648)
                      ..+...|++++|.+++++..+  |+      ...+..+..++...|++++|+..|++..+... .++    ...+..+..
T Consensus        20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   99 (366)
T d1hz4a_          20 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE   99 (366)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence            344455555555555554432  11      11344455556666666666666666543210 011    223444455


Q ss_pred             HHhccCChhHHHHHHHHHHH----hCCCCc---hhHHHHHHHHHHhCCCHHHHHHHHhhcCC--------CChhHHHHHH
Q 037816          367 VFGVDTSLGLGKQIHSLIIK----SDFTSN---PFVNNGLINMYSKCGDLEDSIKVFSRMAP--------RNSVSWNSMI  431 (648)
Q Consensus       367 ~~~~~~~~~~a~~~~~~~~~----~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~  431 (648)
                      .+...|++..+...+.....    .+.+..   ...+..+...+...|+++.+...+.....        .....+..+.
T Consensus       100 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (366)
T d1hz4a_         100 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI  179 (366)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence            56666777777766655442    111111   23445566777888888888887766531        1233455566


Q ss_pred             HHHHHcCChHHHHHHHHHHHHc--CCCCC----HHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC--ChhHHHHHHH
Q 037816          432 AAFARHGNGFKALELYEEMKLE--GVEPT----DVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP--RAEHYACVVD  503 (648)
Q Consensus       432 ~~~~~~~~~~~A~~~~~~m~~~--~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~  503 (648)
                      ..+...++...+...+.+....  .....    ...+..+...+...|+++.|...++.......-.+  ....+..+..
T Consensus       180 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~  259 (366)
T d1hz4a_         180 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR  259 (366)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence            6777888888888888776542  11121    22345556677888999999999998865311111  2345566788


Q ss_pred             HhhhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---------CccHHH
Q 037816          504 MVGRAGLLIEARSFIERM-------PVKPD-VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS---------PAPYIL  566 (648)
Q Consensus       504 ~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---------~~~~~~  566 (648)
                      .+...|++++|...+++.       +..|+ ...+..+..+|...|++++|++.+++++++.+..         ...+..
T Consensus       260 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~  339 (366)
T d1hz4a_         260 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQ  339 (366)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHH
Confidence            999999999999998876       33343 4567778888999999999999999998764332         123344


Q ss_pred             HHHHHHhcCChHHHHH
Q 037816          567 MANIYSCSGRWKERAK  582 (648)
Q Consensus       567 l~~~~~~~g~~~~A~~  582 (648)
                      +...+...|+.+++.+
T Consensus       340 ~~~~l~~~~~l~e~e~  355 (366)
T d1hz4a_         340 QLRQLIQLNTLPELEQ  355 (366)
T ss_dssp             HHHHHHHTTCSCHHHH
T ss_pred             HHHHHHhcCCChHHHH
Confidence            5555666677666654

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=4.2e-09  Score=100.03  Aligned_cols=226  Identities=11%  Similarity=0.125  Sum_probs=136.9

Q ss_pred             HHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC-CHHHHHHHHhhcC---CCChhHHHHHHHHH
Q 037816          359 NMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCG-DLEDSIKVFSRMA---PRNSVSWNSMIAAF  434 (648)
Q Consensus       359 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~l~~~~  434 (648)
                      ..++.+-..+.+.+..++|.++++.+++.. |-+...|+....++...| ++++|+..++...   +.+..+|..+...+
T Consensus        44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~  122 (315)
T d2h6fa1          44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV  122 (315)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHH
Confidence            344555555666777777777777777765 555666666666666655 3677777776654   34566777777777


Q ss_pred             HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCC----
Q 037816          435 ARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL----  510 (648)
Q Consensus       435 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----  510 (648)
                      .+.|++++|+..++++.+.. +-+...|..+...+...|++++|++.++++.+.  -+.+...|+.+...+.+.|.    
T Consensus       123 ~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~--~p~n~~a~~~r~~~l~~~~~~~~~  199 (315)
T d2h6fa1         123 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDR  199 (315)
T ss_dssp             HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred             HhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--CCccHHHHHHHHHHHHHccccchh
Confidence            77777777777777777643 235667777777777777777777777777663  12255566655555554443    


Q ss_pred             --HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC--ccHHHHHHHHHhc--CChHHHHH
Q 037816          511 --LIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSP--APYILMANIYSCS--GRWKERAK  582 (648)
Q Consensus       511 --~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~--~~~~~l~~~~~~~--g~~~~A~~  582 (648)
                        +++|++.+.+. ...| +...|..+...+. ....+++...++.+.+..|...  ..+..++.+|...  +..+.+..
T Consensus       200 ~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~  278 (315)
T d2h6fa1         200 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKED  278 (315)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred             hhhHHhHHHHHHHHHhCCCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence              45666666555 3344 3555555544433 3335566666666666665533  3334455555432  45555555


Q ss_pred             HHHHHHh
Q 037816          583 AIKRMKE  589 (648)
Q Consensus       583 ~~~~m~~  589 (648)
                      .+++..+
T Consensus       279 ~~~ka~~  285 (315)
T d2h6fa1         279 ILNKALE  285 (315)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555543

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=7.5e-09  Score=98.25  Aligned_cols=224  Identities=9%  Similarity=0.089  Sum_probs=160.2

Q ss_pred             cHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccC-ChhHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 037816          325 SMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDT-SLGLGKQIHSLIIKSDFTSNPFVNNGLINMY  403 (648)
Q Consensus       325 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~  403 (648)
                      .++.+...+.+.+.+++|+++++++++.. +-+...|+....++...| ++++|...++.+.+.. +-+..+|..+...+
T Consensus        45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~  122 (315)
T d2h6fa1          45 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV  122 (315)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHH
Confidence            45666777888899999999999999864 445566677777777765 5899999999988876 66788888888999


Q ss_pred             HhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC------c
Q 037816          404 SKCGDLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVG------L  474 (648)
Q Consensus       404 ~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g------~  474 (648)
                      .+.|++++|+..+.++.   +.+...|..+...+...|++++|+..++++.+.+ +-+...|+.+...+.+.+      .
T Consensus       123 ~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~~~  201 (315)
T d2h6fa1         123 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAV  201 (315)
T ss_dssp             HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred             HhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchhhh
Confidence            99999999999998876   4578889999999999999999999999999865 335667776655554433      4


Q ss_pred             HHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHc--CChHHHHH
Q 037816          475 VNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM----PVKPDVLVWQALLGACSIH--GDSEMGKY  548 (648)
Q Consensus       475 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~--g~~~~A~~  548 (648)
                      +++|+..+.++.+.  .+.+...|..+...+...| .+++.+.++..    +...+...+..++..|...  ++.+.+..
T Consensus       202 ~~~ai~~~~~al~~--~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~  278 (315)
T d2h6fa1         202 LEREVQYTLEMIKL--VPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKED  278 (315)
T ss_dssp             HHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred             hHHhHHHHHHHHHh--CCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            67888888888774  2336777777776665544 45666666554    2223455555665555332  33344444


Q ss_pred             HHHHHH
Q 037816          549 AAEKLF  554 (648)
Q Consensus       549 ~~~~~~  554 (648)
                      .++++.
T Consensus       279 ~~~ka~  284 (315)
T d2h6fa1         279 ILNKAL  284 (315)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.01  E-value=2.7e-10  Score=110.03  Aligned_cols=231  Identities=7%  Similarity=-0.057  Sum_probs=170.6

Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccC--ChhHHHHHHHHHHHhCCCCchhHH-HHHHHHHHhCCCHH
Q 037816          334 AQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDT--SLGLGKQIHSLIIKSDFTSNPFVN-NGLINMYSKCGDLE  410 (648)
Q Consensus       334 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~  410 (648)
                      ...|++++|+..+++..+.. +-+...+..+..++...+  +++.+...+..+.... +++...+ ......+...+.++
T Consensus        84 ~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~  161 (334)
T d1dcea1          84 ESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPA  161 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHH
T ss_pred             HHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccH
Confidence            34556788888998888764 445566666666655554  4788888898888875 3444444 44556777889999


Q ss_pred             HHHHHHhhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 037816          411 DSIKVFSRMAP---RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTE  487 (648)
Q Consensus       411 ~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~  487 (648)
                      +|+..++.+..   .+...|+.+...+...|++++|...+.+..+.  .|+.   ..+...+...+..+++...+.....
T Consensus       162 ~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~  236 (334)
T d1dcea1         162 EELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLL  236 (334)
T ss_dssp             HHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHH
Confidence            99999998874   36778888999999999988887666554442  1222   1233344555666778888887766


Q ss_pred             hcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHH
Q 037816          488 VHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPD-VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYI  565 (648)
Q Consensus       488 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~  565 (648)
                        .-+++...+..++..+...|+..+|...+.+. ...|+ ...+..+..++...|++++|++.++++++.+|.+...|.
T Consensus       237 --~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~  314 (334)
T d1dcea1         237 --GRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD  314 (334)
T ss_dssp             --SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             --hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHH
Confidence              34556667777888888899999999999887 55553 566788888899999999999999999999999888888


Q ss_pred             HHHHHHHh
Q 037816          566 LMANIYSC  573 (648)
Q Consensus       566 ~l~~~~~~  573 (648)
                      .+...+.-
T Consensus       315 ~L~~~~~~  322 (334)
T d1dcea1         315 DLRSKFLL  322 (334)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhH
Confidence            88777653

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.99  E-value=4e-08  Score=93.00  Aligned_cols=186  Identities=10%  Similarity=0.081  Sum_probs=126.7

Q ss_pred             ChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCC--C-C-hhHHHHHHHHHHHcCChHHHHHHHH
Q 037816          373 SLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAP--R-N-SVSWNSMIAAFARHGNGFKALELYE  448 (648)
Q Consensus       373 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~-~~~~~~l~~~~~~~~~~~~A~~~~~  448 (648)
                      ..+.+..+++..++...+.+...+...+..+.+.|+++.|..+|+.+..  | + ...|...+..+.+.|+.+.|.++|+
T Consensus        79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~  158 (308)
T d2onda1          79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK  158 (308)
T ss_dssp             HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            3466777777777655566666777777777788888888888877642  2 2 3357777777777888888888888


Q ss_pred             HHHHcCCCCCHHHHHHHHHH-HhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC----CC
Q 037816          449 EMKLEGVEPTDVTFLSLLHA-CSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM----PV  523 (648)
Q Consensus       449 ~m~~~~~~p~~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~  523 (648)
                      ++.+.+ +.+...|...... +...|+.+.|..+|+.+.+.  .+.+...|...++.+.+.|++++|..+|++.    +.
T Consensus       159 ~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~  235 (308)
T d2onda1         159 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL  235 (308)
T ss_dssp             HHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred             HHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence            877654 2233333333322 34457778888888888763  3446677777888888888888888888776    23


Q ss_pred             CCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 037816          524 KPD--VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSP  561 (648)
Q Consensus       524 ~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~  561 (648)
                      .|+  ...|...+..-...|+.+.+..+++++.+..|.+.
T Consensus       236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~  275 (308)
T d2onda1         236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY  275 (308)
T ss_dssp             CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence            332  44677777766777888888888888777777653

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.99  E-value=2e-09  Score=99.54  Aligned_cols=214  Identities=11%  Similarity=-0.035  Sum_probs=147.7

Q ss_pred             hhHHHHHHHHHHHhCC-CC--chhHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHHHHcCChHHHHHHH
Q 037816          374 LGLGKQIHSLIIKSDF-TS--NPFVNNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSMIAAFARHGNGFKALELY  447 (648)
Q Consensus       374 ~~~a~~~~~~~~~~~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~  447 (648)
                      .+.+..-++++..... .+  ...++..+..+|.+.|++++|+..|++..   +.++.+|+.+..+|.+.|++++|+..|
T Consensus        15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~   94 (259)
T d1xnfa_          15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAF   94 (259)
T ss_dssp             HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhh
Confidence            3444445555554322 11  23466677889999999999999999875   457889999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC
Q 037816          448 EEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPD  526 (648)
Q Consensus       448 ~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~  526 (648)
                      ++..+.. +-+..++..+..++...|++++|...++...+.  .+.+......+...+.+.+..+.+..+.... ...++
T Consensus        95 ~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (259)
T d1xnfa_          95 DSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKE  171 (259)
T ss_dssp             HHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCC
T ss_pred             hHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchh
Confidence            9999864 235667888899999999999999999999874  2334444444555556666555555444443 11222


Q ss_pred             HHHHHHHHHHHH----HcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037816          527 VLVWQALLGACS----IHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMG  591 (648)
Q Consensus       527 ~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  591 (648)
                      ...+. ++..+.    ..+..+.+...+.......|....+|..++.+|...|++++|++.|++..+..
T Consensus       172 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  239 (259)
T d1xnfa_         172 QWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN  239 (259)
T ss_dssp             STHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             hhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence            22222 122221    12234444444444445556666788999999999999999999999998743

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.95  E-value=5.3e-08  Score=92.17  Aligned_cols=182  Identities=12%  Similarity=0.012  Sum_probs=144.7

Q ss_pred             CCHHHHHHHHhhcC----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 037816          407 GDLEDSIKVFSRMA----PRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFL  482 (648)
Q Consensus       407 g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~  482 (648)
                      +..++|..+|++..    +.+...|...+..+.+.|+++.|..+|+++.+.........|...+..+.+.|+++.|.++|
T Consensus        78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~  157 (308)
T d2onda1          78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF  157 (308)
T ss_dssp             HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence            34577888887653    34566788888889999999999999999997542233557888999999999999999999


Q ss_pred             HHhHHhcCCCCChhHHHHHHHH-hhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 037816          483 KSMTEVHRISPRAEHYACVVDM-VGRAGLLIEARSFIERM--PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPD  559 (648)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  559 (648)
                      +++.+.  .+.+...|...... +...|+.+.|..+|+.+  ....+...|...+..+...|+++.|..+|++++...|.
T Consensus       158 ~~al~~--~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~  235 (308)
T d2onda1         158 KKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL  235 (308)
T ss_dssp             HHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred             HHHHHh--CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence            999873  33455556555544 34468999999999998  33345788999999999999999999999999998776


Q ss_pred             CCc----cHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816          560 SPA----PYILMANIYSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       560 ~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~  590 (648)
                      ++.    +|...+..-...|+.+.+..+++++.+.
T Consensus       236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~  270 (308)
T d2onda1         236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA  270 (308)
T ss_dssp             CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            543    6777888778889999999999998764

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.79  E-value=6e-09  Score=100.28  Aligned_cols=244  Identities=9%  Similarity=-0.021  Sum_probs=171.3

Q ss_pred             CCHHHHHHHHHHHHHcCCCcCHHH-HH---HHHHHHh-------ccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 037816          337 GFEEEAMQLFVKMVKAGIEIDPNM-VS---AVLGVFG-------VDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSK  405 (648)
Q Consensus       337 ~~~~~a~~~~~~m~~~~~~p~~~~-~~---~ll~~~~-------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~  405 (648)
                      +..++|++++++..+..  |+..+ |+   .++..+.       ..|.+++|..+++.+.+.. +.+...+..+..++..
T Consensus        43 ~~~~~al~~~~~~l~~~--P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~  119 (334)
T d1dcea1          43 ELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSR  119 (334)
T ss_dssp             CCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred             cccHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHH
Confidence            33477888888777643  54432 22   2222222       3344677888888887765 5566677767666666


Q ss_pred             CC--CHHHHHHHHhhcC---CCChhHHHH-HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHH
Q 037816          406 CG--DLEDSIKVFSRMA---PRNSVSWNS-MIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGM  479 (648)
Q Consensus       406 ~g--~~~~A~~~~~~~~---~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~  479 (648)
                      .+  ++++|...+.++.   +++...+.. ....+...+.+++|+..++++.+.+ +-+...|..+...+...|++++|.
T Consensus       120 ~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~  198 (334)
T d1dcea1         120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSG  198 (334)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred             hccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHH
Confidence            55  4788888888764   345555543 4456667889999999999888865 336778888888888888888776


Q ss_pred             HHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 037816          480 EFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM--PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQ  557 (648)
Q Consensus       480 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  557 (648)
                      ..++...+.   .|+   ...+...+...+..+++...+...  ...++...+..+...+...|+.++|...+.+..+.+
T Consensus       199 ~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  272 (334)
T d1dcea1         199 PQGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPEN  272 (334)
T ss_dssp             SCCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHhHHh---HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence            666555442   111   112233445556666777766665  223344456666777888899999999999999999


Q ss_pred             CCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816          558 PDSPAPYILMANIYSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       558 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  590 (648)
                      |.+..++..++.+|...|++++|++++++..+.
T Consensus       273 p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l  305 (334)
T d1dcea1         273 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV  305 (334)
T ss_dssp             HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999774

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.62  E-value=1e-07  Score=83.77  Aligned_cols=117  Identities=6%  Similarity=-0.191  Sum_probs=81.3

Q ss_pred             CCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHH
Q 037816          457 PTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPD-VLVWQALL  534 (648)
Q Consensus       457 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~  534 (648)
                      |+...+......+.+.|++++|+..|+++.+.  -+.++..|..+..+|.+.|++++|+..|++. .+.|+ ...|..+.
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg   79 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG   79 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence            66666777777777788888888888777763  2336677777777777777777777777776 55564 66677777


Q ss_pred             HHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcC
Q 037816          535 GACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSG  575 (648)
Q Consensus       535 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  575 (648)
                      .+|...|++++|+..+++++++.|.+...+...+..+...+
T Consensus        80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~~  120 (201)
T d2c2la1          80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA  120 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence            77777777777777777777777665555544444444433

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=2e-07  Score=73.35  Aligned_cols=89  Identities=15%  Similarity=0.116  Sum_probs=68.7

Q ss_pred             HHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHH
Q 037816          502 VDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKE  579 (648)
Q Consensus       502 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~  579 (648)
                      ...+.+.|++++|+..|++. ...| +...|..+..+|...|++++|+..++++++.+|.++.+|..++.++...|++++
T Consensus        10 g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~   89 (117)
T d1elwa_          10 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEE   89 (117)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHH
Confidence            45667777888888777776 3334 466677777888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHhC
Q 037816          580 RAKAIKRMKEM  590 (648)
Q Consensus       580 A~~~~~~m~~~  590 (648)
                      |+..+++..+.
T Consensus        90 A~~~~~~a~~~  100 (117)
T d1elwa_          90 AKRTYEEGLKH  100 (117)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHh
Confidence            88888887763

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=1.4e-06  Score=75.25  Aligned_cols=141  Identities=9%  Similarity=-0.048  Sum_probs=102.4

Q ss_pred             HHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHH
Q 037816          400 INMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGM  479 (648)
Q Consensus       400 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~  479 (648)
                      ...+...|+++.|++.|.++.+++..+|..+..+|...|++++|++.|++.++.+ +.+...|..+..++.+.|++++|.
T Consensus        12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~   90 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI   90 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHH
Confidence            3456788899999999998888888888888899999999999999999988865 336778888888889999999999


Q ss_pred             HHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 037816          480 EFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPD-VLVWQALLGACSIHGDSEMGKYAAEKLFLAQP  558 (648)
Q Consensus       480 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p  558 (648)
                      ..|++....  .+.+...      .|...|.           ..+++ ..++..+..++.+.|++++|.+.++++++..|
T Consensus        91 ~~~~kAl~~--~~~n~~~------~~~~~~~-----------~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~  151 (192)
T d1hh8a_          91 KDLKEALIQ--LRGNQLI------DYKILGL-----------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS  151 (192)
T ss_dssp             HHHHHHHHT--TTTCSEE------ECGGGTB-----------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHh--CccCchH------HHHHhhh-----------hcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            988888762  2222110      0000000           01111 23455667778888999999999988888887


Q ss_pred             CC
Q 037816          559 DS  560 (648)
Q Consensus       559 ~~  560 (648)
                      ..
T Consensus       152 ~~  153 (192)
T d1hh8a_         152 EP  153 (192)
T ss_dssp             SG
T ss_pred             Cc
Confidence            65

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=4.6e-07  Score=71.20  Aligned_cols=105  Identities=12%  Similarity=0.019  Sum_probs=86.5

Q ss_pred             HHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC
Q 037816          465 LLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGD  542 (648)
Q Consensus       465 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~  542 (648)
                      -...+...|++++|+..|+++.+.  -+.+...|..+..+|.+.|++++|++.+++. .+.| ++..|..+..++...|+
T Consensus         9 ~g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~   86 (117)
T d1elwa_           9 KGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR   86 (117)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccC
Confidence            345677888999999999988874  3447778888888999999999999988887 3334 57888899999999999


Q ss_pred             hHHHHHHHHHHHhcCCCCCccHHHHHHHH
Q 037816          543 SEMGKYAAEKLFLAQPDSPAPYILMANIY  571 (648)
Q Consensus       543 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  571 (648)
                      +++|+..++++++.+|.++.++..+..+-
T Consensus        87 ~~~A~~~~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          87 FEEAKRTYEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             HHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence            99999999999999999988887776654

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.54  E-value=9.8e-08  Score=74.49  Aligned_cols=90  Identities=12%  Similarity=0.011  Sum_probs=81.5

Q ss_pred             HHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCC
Q 037816          499 ACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGR  576 (648)
Q Consensus       499 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  576 (648)
                      -.+...+.+.|++++|+..|++. ...| +...|..+..++.+.|++++|+..++++++.+|.++.++..++.+|...|+
T Consensus        20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~   99 (112)
T d1hxia_          20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN   99 (112)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence            34567788999999999999998 4455 588899999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHH
Q 037816          577 WKERAKAIKRMK  588 (648)
Q Consensus       577 ~~~A~~~~~~m~  588 (648)
                      +++|.+.+++.+
T Consensus       100 ~~~A~~~l~~~l  111 (112)
T d1hxia_         100 ANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999999863

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=1.1e-06  Score=76.10  Aligned_cols=120  Identities=8%  Similarity=0.033  Sum_probs=95.4

Q ss_pred             HHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHH
Q 037816          468 ACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEM  545 (648)
Q Consensus       468 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~  545 (648)
                      .+...|+++.|++.|.++     .+|++.+|..+..+|...|++++|++.|++. .+.| +...|..+..+|.+.|++++
T Consensus        14 ~~~~~~d~~~Al~~~~~i-----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~   88 (192)
T d1hh8a_          14 LAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDL   88 (192)
T ss_dssp             HHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHCCCHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHH
Confidence            456778888888888754     2467777888888888888888888888887 4445 47778888888999999999


Q ss_pred             HHHHHHHHHhcCCCCC----------------ccHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037816          546 GKYAAEKLFLAQPDSP----------------APYILMANIYSCSGRWKERAKAIKRMKEMGV  592 (648)
Q Consensus       546 A~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~  592 (648)
                      |+..|++++...|.+.                .++..++.++.+.|++++|.+.+++..+...
T Consensus        89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~  151 (192)
T d1hh8a_          89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS  151 (192)
T ss_dssp             HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            9999999887655543                3467889999999999999999999877543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.53  E-value=1.6e-07  Score=82.38  Aligned_cols=96  Identities=7%  Similarity=-0.078  Sum_probs=74.1

Q ss_pred             CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHH
Q 037816          422 RNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP-RAEHYAC  500 (648)
Q Consensus       422 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~  500 (648)
                      |+...+......|.+.|++++|+..|.+.++.. +.+...|..+..+|.+.|++++|+..|+++.+   +.| +...|..
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~---l~p~~~~a~~~   77 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE---LDGQSVKAHFF   77 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SCTTCHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH---hCCCcHHHHHH
Confidence            444555666778888888888888888888754 34667788888888888888888888888864   445 6777888


Q ss_pred             HHHHhhhcCCHHHHHHHHHhC
Q 037816          501 VVDMVGRAGLLIEARSFIERM  521 (648)
Q Consensus       501 l~~~~~~~g~~~~A~~~~~~~  521 (648)
                      +..+|.+.|++++|+..|+++
T Consensus        78 lg~~~~~l~~~~~A~~~~~~a   98 (201)
T d2c2la1          78 LGQCQLEMESYDEAIANLQRA   98 (201)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHH
Confidence            888888888888888888876

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=8.3e-07  Score=74.26  Aligned_cols=106  Identities=9%  Similarity=-0.032  Sum_probs=65.0

Q ss_pred             HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc
Q 037816          463 LSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIH  540 (648)
Q Consensus       463 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~  540 (648)
                      ......|.+.|++++|...|+++.+.  -+.+...|..+..+|...|++++|.+.|+++ ...| +...|..++.++...
T Consensus        14 ~~~gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~   91 (159)
T d1a17a_          14 KTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL   91 (159)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHc
Confidence            33445566666677777777666653  2335666666666666666666666666665 3333 345666666666666


Q ss_pred             CChHHHHHHHHHHHhcCCCCCccHHHHHHH
Q 037816          541 GDSEMGKYAAEKLFLAQPDSPAPYILMANI  570 (648)
Q Consensus       541 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  570 (648)
                      |++++|+..+++++...|.++.++..+..+
T Consensus        92 g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~  121 (159)
T d1a17a_          92 GKFRAALRDYETVVKVKPHDKDAKMKYQEC  121 (159)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            666666666666666666666655555444

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=1.2e-06  Score=73.31  Aligned_cols=104  Identities=11%  Similarity=-0.019  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhh
Q 037816          427 WNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVG  506 (648)
Q Consensus       427 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~  506 (648)
                      +......|.+.|++++|+..|++..+.. +-+...|..+..+|...|++++|...|+++.+.  .+.+...|..++.+|.
T Consensus        13 l~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~p~~~~a~~~~g~~~~   89 (159)
T d1a17a_          13 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNM   89 (159)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHH--cccchHHHHHHHHHHH
Confidence            4455667788888888888888888864 336677788888888888888888888888774  2336678888888888


Q ss_pred             hcCCHHHHHHHHHhC-CCCCC-HHHHHHH
Q 037816          507 RAGLLIEARSFIERM-PVKPD-VLVWQAL  533 (648)
Q Consensus       507 ~~g~~~~A~~~~~~~-~~~p~-~~~~~~l  533 (648)
                      ..|++++|.+.+++. ...|+ ...+..+
T Consensus        90 ~~g~~~eA~~~~~~a~~~~p~~~~~~~~l  118 (159)
T d1a17a_          90 ALGKFRAALRDYETVVKVKPHDKDAKMKY  118 (159)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            888888888888887 44454 3333333

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.42  E-value=1.6e-06  Score=80.79  Aligned_cols=189  Identities=12%  Similarity=0.045  Sum_probs=123.9

Q ss_pred             HHHHHHhCCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC---CC--CHHHHHH
Q 037816          399 LINMYSKCGDLEDSIKVFSRMAP-----RN----SVSWNSMIAAFARHGNGFKALELYEEMKLEGV---EP--TDVTFLS  464 (648)
Q Consensus       399 li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~---~p--~~~~~~~  464 (648)
                      ....|...|++++|.+.|.+..+     .+    ..+|..+..+|.+.|++++|...+++..+...   .+  ...++..
T Consensus        43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  122 (290)
T d1qqea_          43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE  122 (290)
T ss_dssp             HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence            35567777888888777776542     11    34677788888888999999888887654211   11  1334555


Q ss_pred             HHHHHh-ccCcHHHHHHHHHHhHHhc---CCCC-ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-------C-HHHH
Q 037816          465 LLHACS-HVGLVNKGMEFLKSMTEVH---RISP-RAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-------D-VLVW  530 (648)
Q Consensus       465 ll~~~~-~~g~~~~A~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-------~-~~~~  530 (648)
                      +...|. ..|++++|.+.+++..+..   +.++ ...++..+...|...|++++|.+.|+++ ...|       . ...+
T Consensus       123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~  202 (290)
T d1qqea_         123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF  202 (290)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred             HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence            666664 4699999999998876531   1111 2445778889999999999999999886 1111       1 1223


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc-----cHHHHHHHHHh--cCChHHHHHHHHHH
Q 037816          531 QALLGACSIHGDSEMGKYAAEKLFLAQPDSPA-----PYILMANIYSC--SGRWKERAKAIKRM  587 (648)
Q Consensus       531 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-----~~~~l~~~~~~--~g~~~~A~~~~~~m  587 (648)
                      ...+..+...|+++.|...++++.+..|.-+.     ....++.++..  .+++++|+..|+++
T Consensus       203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~  266 (290)
T d1qqea_         203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF  266 (290)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            44555677889999999999999988875433     34556666654  35688888877654

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=1.1e-06  Score=69.21  Aligned_cols=106  Identities=13%  Similarity=-0.049  Sum_probs=81.5

Q ss_pred             HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCC---HHHHHHHHHhC-CCCCCH---HHHHHHHH
Q 037816          463 LSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL---LIEARSFIERM-PVKPDV---LVWQALLG  535 (648)
Q Consensus       463 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p~~---~~~~~l~~  535 (648)
                      ..+++.+...+++++|.+.|++..+.  -+.++.++..+..++.+.++   +++|+++++++ ...|++   .+|..+..
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~   80 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV   80 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence            34677778888899999999988873  34477888888888877554   45688888887 444443   36778888


Q ss_pred             HHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHH
Q 037816          536 ACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANI  570 (648)
Q Consensus       536 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  570 (648)
                      +|.+.|++++|+..|+++++.+|++..+......+
T Consensus        81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I  115 (122)
T d1nzna_          81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI  115 (122)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence            99999999999999999999999987666555433

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=3.4e-06  Score=71.14  Aligned_cols=85  Identities=12%  Similarity=-0.039  Sum_probs=72.0

Q ss_pred             hHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHh
Q 037816          496 EHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSC  573 (648)
Q Consensus       496 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  573 (648)
                      .+|+.+..+|.+.|++++|+..+++. .+.| ++..|..+..+|...|++++|+..|+++++++|+++.+...+..+..+
T Consensus        63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  142 (170)
T d1p5qa1          63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR  142 (170)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            35667888899999999999999887 5555 688889999999999999999999999999999999999888888776


Q ss_pred             cCChHHH
Q 037816          574 SGRWKER  580 (648)
Q Consensus       574 ~g~~~~A  580 (648)
                      .+...+.
T Consensus       143 ~~~~~~~  149 (170)
T d1p5qa1         143 IRRQLAR  149 (170)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6655544

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.34  E-value=3.3e-06  Score=78.58  Aligned_cols=173  Identities=8%  Similarity=-0.016  Sum_probs=130.0

Q ss_pred             CHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhccCcHHHHHHHH
Q 037816          408 DLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLE----GVEPT-DVTFLSLLHACSHVGLVNKGMEFL  482 (648)
Q Consensus       408 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~  482 (648)
                      ++++|.++|.           .....|...|++++|.+.|.+..+.    +-.++ ..+|..+..+|.+.|++++|...+
T Consensus        32 ~~~~Aa~~y~-----------~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~  100 (290)
T d1qqea_          32 KFEEAADLCV-----------QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL  100 (290)
T ss_dssp             HHHHHHHHHH-----------HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cHHHHHHHHH-----------HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence            4667766654           4567888999999999999988763    21222 357888899999999999999999


Q ss_pred             HHhHHhcCCCC----ChhHHHHHHHHhhh-cCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHcCChHHHHHH
Q 037816          483 KSMTEVHRISP----RAEHYACVVDMVGR-AGLLIEARSFIERM-------PVKPD-VLVWQALLGACSIHGDSEMGKYA  549 (648)
Q Consensus       483 ~~~~~~~~~~~----~~~~~~~l~~~~~~-~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~  549 (648)
                      ++..+...-..    ...++..+...|.. .|++++|++.+++.       +..+. ..++..+...+...|++++|+..
T Consensus       101 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~  180 (290)
T d1qqea_         101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI  180 (290)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHH
Confidence            98765321111    24556677777754 69999999999876       11111 44577788899999999999999


Q ss_pred             HHHHHhcCCCCCc-------cHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037816          550 AEKLFLAQPDSPA-------PYILMANIYSCSGRWKERAKAIKRMKEMG  591 (648)
Q Consensus       550 ~~~~~~~~p~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  591 (648)
                      ++++....|.++.       .+...+.++...|+++.|.+.+++..+..
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~  229 (290)
T d1qqea_         181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED  229 (290)
T ss_dssp             HHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-
T ss_pred             HHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            9999988877653       34566777888999999999999987653

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=4.9e-06  Score=70.16  Aligned_cols=110  Identities=5%  Similarity=-0.064  Sum_probs=79.7

Q ss_pred             HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 037816          462 FLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERMPVKPDVLVWQALLGACSIHG  541 (648)
Q Consensus       462 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g  541 (648)
                      +......+.+.|++++|+..|.+........+....               .-......+    -..+|+.+..+|.+.|
T Consensus        16 l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~---------------~~~~~~~~~----~~~~~~nla~~y~k~~   76 (170)
T d1p5qa1          16 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSN---------------EEAQKAQAL----RLASHLNLAMCHLKLQ   76 (170)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCS---------------HHHHHHHHH----HHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccch---------------HHHhhhchh----HHHHHHHHHHHHHhhh
Confidence            444455677777777777777777653221111000               000000000    1245677888899999


Q ss_pred             ChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816          542 DSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       542 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  590 (648)
                      ++++|+..++++++.+|.++.++..++.+|...|++++|+..|++..+.
T Consensus        77 ~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  125 (170)
T d1p5qa1          77 AFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL  125 (170)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999884

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.28  E-value=7.8e-06  Score=67.46  Aligned_cols=63  Identities=10%  Similarity=0.008  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816          528 LVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       528 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  590 (648)
                      .+|..+..+|.+.|++++|+..++++++.+|.+..+|..++.++...|++++|+..|++..+.
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l  130 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL  130 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence            466778888999999999999999999999999999999999999999999999999998774

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=2.4e-06  Score=67.14  Aligned_cols=92  Identities=9%  Similarity=-0.025  Sum_probs=78.0

Q ss_pred             HHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcCCCC--CccHHHHHHHH
Q 037816          499 ACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHG---DSEMGKYAAEKLFLAQPDS--PAPYILMANIY  571 (648)
Q Consensus       499 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~  571 (648)
                      ..++..+...+++++|.+.|++. ...| ++.++..+..++.+.+   ++++|+.+++++++.+|.+  ..++..++.+|
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            45778888999999999999998 4444 5788888988887654   5567999999999988765  34889999999


Q ss_pred             HhcCChHHHHHHHHHHHhC
Q 037816          572 SCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       572 ~~~g~~~~A~~~~~~m~~~  590 (648)
                      .+.|++++|++.++++++.
T Consensus        83 ~~~g~~~~A~~~~~~aL~~  101 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQT  101 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHh
Confidence            9999999999999999884

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.19  E-value=0.0002  Score=65.08  Aligned_cols=224  Identities=9%  Similarity=-0.049  Sum_probs=131.0

Q ss_pred             cccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhc----cCChhHHHHHHHHHHHhCCCCchhHHHH
Q 037816          323 GVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGV----DTSLGLGKQIHSLIIKSDFTSNPFVNNG  398 (648)
Q Consensus       323 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~  398 (648)
                      +..+..|...+...+++++|++.|++..+.|   +...+..|-..+..    ..+...+..++....+.+          
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~----------   68 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----------   68 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc----------
Confidence            3445556666667777777777777776655   23333333333322    334444444444444333          


Q ss_pred             HHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----h
Q 037816          399 LINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFAR----HGNGFKALELYEEMKLEGVEPTDVTFLSLLHAC----S  470 (648)
Q Consensus       399 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~----~  470 (648)
                                              +......+...+..    ..+.+.|...++...+.|..   .....+...+    .
T Consensus        69 ------------------------~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~  121 (265)
T d1ouva_          69 ------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKV  121 (265)
T ss_dssp             ------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSS
T ss_pred             ------------------------ccchhhccccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCc
Confidence                                    22222222222222    34566677777766665521   1111121111    2


Q ss_pred             ccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCC
Q 037816          471 HVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR----AGLLIEARSFIERMPVKPDVLVWQALLGACSI----HGD  542 (648)
Q Consensus       471 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~  542 (648)
                      .......+...+.....    ..+...+..|...|..    ..+...+...++......+......+...|..    ..+
T Consensus       122 ~~~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d  197 (265)
T d1ouva_         122 VTRDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKN  197 (265)
T ss_dssp             SCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCC
T ss_pred             ccchhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccc
Confidence            34456666666666544    2355556666666654    44666777777766223466666667666665    568


Q ss_pred             hHHHHHHHHHHHhcCCCCCccHHHHHHHHHh----cCChHHHHHHHHHHHhCCC
Q 037816          543 SEMGKYAAEKLFLAQPDSPAPYILMANIYSC----SGRWKERAKAIKRMKEMGV  592 (648)
Q Consensus       543 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~  592 (648)
                      +++|+..|+++.+.+  ++..+..|+.+|.+    ..++++|.++|++..+.|.
T Consensus       198 ~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~  249 (265)
T d1ouva_         198 FKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA  249 (265)
T ss_dssp             HHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred             hhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence            999999999998875  45688889998876    3489999999999988774

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=6e-06  Score=65.75  Aligned_cols=92  Identities=11%  Similarity=0.070  Sum_probs=76.0

Q ss_pred             HHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcc-------HHHHH
Q 037816          498 YACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP-------YILMA  568 (648)
Q Consensus       498 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-------~~~l~  568 (648)
                      +..+...|.+.|++++|++.|++. .+.| +...+..+..+|.+.|++++|+..++++++.+|.++..       |..++
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg   86 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG   86 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence            445677888899999999999887 4444 57788889999999999999999999999998887764       45566


Q ss_pred             HHHHhcCChHHHHHHHHHHHh
Q 037816          569 NIYSCSGRWKERAKAIKRMKE  589 (648)
Q Consensus       569 ~~~~~~g~~~~A~~~~~~m~~  589 (648)
                      ..+...+++++|++.+++...
T Consensus        87 ~~~~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          87 NSYFKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHh
Confidence            677888899999999988765

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.11  E-value=2.9e-05  Score=65.05  Aligned_cols=93  Identities=11%  Similarity=-0.002  Sum_probs=74.3

Q ss_pred             hHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHh
Q 037816          496 EHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSC  573 (648)
Q Consensus       496 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  573 (648)
                      .+|..+..+|.+.|++++|+..+++. .+.| +...|..+..++...|++++|+..|+++++++|+++.+...+..+...
T Consensus        65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  144 (168)
T d1kt1a1          65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK  144 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            34666788889999999999999887 4344 577888889999999999999999999999999999888888888777


Q ss_pred             cCChHH-HHHHHHHHH
Q 037816          574 SGRWKE-RAKAIKRMK  588 (648)
Q Consensus       574 ~g~~~~-A~~~~~~m~  588 (648)
                      .+...+ ..+.+.+|-
T Consensus       145 ~~~~~e~~kk~~~~~f  160 (168)
T d1kt1a1         145 AKEHNERDRRTYANMF  160 (168)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHH
Confidence            665543 445555553

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.10  E-value=3e-05  Score=64.95  Aligned_cols=63  Identities=5%  Similarity=-0.040  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816          528 LVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       528 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  590 (648)
                      .+|..+..+|.+.|++++|+..++++++++|.+..+|..++.++...|++++|+..|+++.+.
T Consensus        65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l  127 (168)
T d1kt1a1          65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV  127 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            346667788999999999999999999999999999999999999999999999999999874

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.09  E-value=1.3e-05  Score=67.56  Aligned_cols=86  Identities=7%  Similarity=-0.116  Sum_probs=68.3

Q ss_pred             ChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHH
Q 037816          494 RAEHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIY  571 (648)
Q Consensus       494 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  571 (648)
                      ....+..+..+|.+.|++++|+..++++ .+.| +...|..+..++...|++++|+..|+++++++|++..++..+..+.
T Consensus        76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~  155 (169)
T d1ihga1          76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK  155 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            4556777888888999999999988887 5555 4777888888999999999999999999999999888888877766


Q ss_pred             HhcCChHH
Q 037816          572 SCSGRWKE  579 (648)
Q Consensus       572 ~~~g~~~~  579 (648)
                      .+.....+
T Consensus       156 ~~l~~~~~  163 (169)
T d1ihga1         156 QKIKAQKD  163 (169)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55444433

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.07  E-value=1.6e-05  Score=66.92  Aligned_cols=64  Identities=8%  Similarity=0.014  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816          527 VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       527 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  590 (648)
                      ...|..+..++.+.|++++|+..++++++++|.++.+|..++.+|.+.|++++|++.|++..+.
T Consensus        77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l  140 (169)
T d1ihga1          77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI  140 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence            4567778888999999999999999999999999999999999999999999999999999884

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.04  E-value=0.00072  Score=62.63  Aligned_cols=218  Identities=9%  Similarity=0.003  Sum_probs=122.1

Q ss_pred             ChHHHHHHHHHHHhcCCChhHHHHhhccCCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCcHhHHHHHHHHh
Q 037816           87 NATVIWNSLLSFYLKCDQMRNAVKLFDDMPMRDTVSWNTMVSGFLRNGEFDMGFGFFKRSLELGFYQLDQASFTIILSAC  166 (648)
Q Consensus        87 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~~ll~~~  166 (648)
                      |+..--..+...|-+.|.++.|..+|..+..     |..++..+.+.+++..|.+.+.+..       ...+|..+...|
T Consensus        12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d-----~~rl~~~~v~l~~~~~avd~~~k~~-------~~~~~k~~~~~l   79 (336)
T d1b89a_          12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFAC   79 (336)
T ss_dssp             C----------------CTTTHHHHHHHTTC-----HHHHHHHHHTTTCHHHHHHHHHHHT-------CHHHHHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC-----HHHHHHHHHhhccHHHHHHHHHHcC-------CHHHHHHHHHHH
Confidence            4444445566778888999999999987664     7888888899999999888876542       222777778887


Q ss_pred             hccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhHhcCChhHHHHHhcccC---CCCcccHHHHHHHHHHCCCchHHHH
Q 037816          167 DRSELSLVSKMIHCLVYLCGYEEEVTVGNALITSYFKCGSSSSGRKVFGEMR---VRNVITWTAVISGLVQNQLYEEGLK  243 (648)
Q Consensus       167 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~  243 (648)
                      ........+..     .......+......++..|-..|.++....+++...   ..+...++.++..|++.+ +++..+
T Consensus        80 ~~~~e~~la~i-----~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e  153 (336)
T d1b89a_          80 VDGKEFRLAQM-----CGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMRE  153 (336)
T ss_dssp             HHTTCHHHHHH-----TTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHH
T ss_pred             HhCcHHHHHHH-----HHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHH
Confidence            77665544321     122233455555677788888888888888887653   334556777777777653 344444


Q ss_pred             HHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCc
Q 037816          244 LFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDG  323 (648)
Q Consensus       244 ~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  323 (648)
                      .++..      .+......+++.|.+.+-+                      ..++-.|.+.|+++.|..+.-.-. ++.
T Consensus       154 ~l~~~------s~~y~~~k~~~~c~~~~l~----------------------~elv~Ly~~~~~~~~A~~~~i~~~-~~~  204 (336)
T d1b89a_         154 HLELF------WSRVNIPKVLRAAEQAHLW----------------------AELVFLYDKYEEYDNAIITMMNHP-TDA  204 (336)
T ss_dssp             HHHHH------STTSCHHHHHHHHHTTTCH----------------------HHHHHHHHHTTCHHHHHHHHHHST-TTT
T ss_pred             HHHhc------cccCCHHHHHHHHHHcCCh----------------------HHHHHHHHhcCCHHHHHHHHHHcc-hhh
Confidence            44332      1122223344444444433                      335556667777776665542211 123


Q ss_pred             ccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 037816          324 VSMTVILVGFAQNGFEEEAMQLFVKMVK  351 (648)
Q Consensus       324 ~~~~~li~~~~~~~~~~~a~~~~~~m~~  351 (648)
                      ......+..+.+..+++...+......+
T Consensus       205 ~~~~~f~e~~~k~~N~e~~~~~i~~yL~  232 (336)
T d1b89a_         205 WKEGQFKDIITKVANVELYYRAIQFYLE  232 (336)
T ss_dssp             CCHHHHHHHHHHCSSTHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHccCChHHHHHHHHHHHH
Confidence            3345566667777777666666655554

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.01  E-value=2.5e-05  Score=64.23  Aligned_cols=77  Identities=12%  Similarity=-0.073  Sum_probs=67.0

Q ss_pred             hHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHH
Q 037816          496 EHYACVVDMVGRAGLLIEARSFIERM-PVKP-DVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYS  572 (648)
Q Consensus       496 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  572 (648)
                      .+|..+..+|.+.|++++|++.+++. .+.| +..+|..+..++...|++++|+..|+++++++|.+..+...+..+..
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  146 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN  146 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            46777889999999999999999987 4455 58899999999999999999999999999999999888777766543

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.99  E-value=0.0045  Score=57.10  Aligned_cols=250  Identities=7%  Similarity=-0.027  Sum_probs=107.7

Q ss_pred             CCcccHHHHHHHHHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHH
Q 037816          220 RNVITWTAVISGLVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALM  299 (648)
Q Consensus       220 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  299 (648)
                      +|..-...+.+-|.+.|.++.|..+|..+..         |..++..+.+.+++..|.++....      .+..+|..+.
T Consensus        12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~   76 (336)
T d1b89a_          12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC   76 (336)
T ss_dssp             C----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHH
Confidence            4444445566667778888888888876643         555666666666666655554322      2344555555


Q ss_pred             HHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHH
Q 037816          300 DMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQ  379 (648)
Q Consensus       300 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~  379 (648)
                      ..+.+.....-|.-+ ......++.....++..|-..|.+++...+++..... -.++...++.++..+++.+. +   +
T Consensus        77 ~~l~~~~e~~la~i~-~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~-~---k  150 (336)
T d1b89a_          77 FACVDGKEFRLAQMC-GLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKP-Q---K  150 (336)
T ss_dssp             HHHHHTTCHHHHHHT-TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH-H---H
T ss_pred             HHHHhCcHHHHHHHH-HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh-H---H
Confidence            555555544333111 1111122233344555556666666666666554322 13444455555555555322 1   1


Q ss_pred             HHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH
Q 037816          380 IHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMAPRNSVSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTD  459 (648)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~  459 (648)
                      +.+.+...+...+.   ..++..|-+.+-                  |..++-.|.+.|++++|..+.   .+  ..++.
T Consensus       151 l~e~l~~~s~~y~~---~k~~~~c~~~~l------------------~~elv~Ly~~~~~~~~A~~~~---i~--~~~~~  204 (336)
T d1b89a_         151 MREHLELFWSRVNI---PKVLRAAEQAHL------------------WAELVFLYDKYEEYDNAIITM---MN--HPTDA  204 (336)
T ss_dssp             HHHHHHHHSTTSCH---HHHHHHHHTTTC------------------HHHHHHHHHHTTCHHHHHHHH---HH--STTTT
T ss_pred             HHHHHHhccccCCH---HHHHHHHHHcCC------------------hHHHHHHHHhcCCHHHHHHHH---HH--cchhh
Confidence            22222221111111   112222222222                  344445555566666654432   22  12333


Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC
Q 037816          460 VTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM  521 (648)
Q Consensus       460 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  521 (648)
                      .....++..+.+.++.+...++.....+.     ++...+.++......-+..+..+.+++-
T Consensus       205 ~~~~~f~e~~~k~~N~e~~~~~i~~yL~~-----~p~~i~~lL~~v~~~~d~~r~V~~~~k~  261 (336)
T d1b89a_         205 WKEGQFKDIITKVANVELYYRAIQFYLEF-----KPLLLNDLLMVLSPRLDHTRAVNYFSKV  261 (336)
T ss_dssp             CCHHHHHHHHHHCSSTHHHHHHHHHHHHH-----CGGGHHHHHHHHGGGCCHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHccCChHHHHHHHHHHHHc-----CHHHHHHHHHHhccCCCHHHHHHHHHhc
Confidence            33334455555555655555555544432     2333455555555555555555555443

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.98  E-value=2.1e-05  Score=66.43  Aligned_cols=118  Identities=16%  Similarity=0.110  Sum_probs=84.6

Q ss_pred             HHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCH-HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChH
Q 037816          466 LHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLL-IEARSFIERMPVKPDVLVWQALLGACSIHGDSE  544 (648)
Q Consensus       466 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~  544 (648)
                      .......|++++|.+.|.+....+.-.+-..        +. .+.+ ..-..-++..    ....+..+..++...|+++
T Consensus        18 g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~--------~~-~~~w~~~~r~~l~~~----~~~a~~~la~~~~~~g~~~   84 (179)
T d2ff4a2          18 GVHAAAAGRFEQASRHLSAALREWRGPVLDD--------LR-DFQFVEPFATALVED----KVLAHTAKAEAEIACGRAS   84 (179)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG--------GT-TSTTHHHHHHHHHHH----HHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCccccccc--------Cc-chHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCCch
Confidence            3456788899999998888876421111000        00 0111 1111111111    2456777889999999999


Q ss_pred             HHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCC
Q 037816          545 MGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKE-----MGVDKET  596 (648)
Q Consensus       545 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~  596 (648)
                      +|+..++++++.+|.+...|..++.+|...|++++|++.|+++.+     .|+.|.+
T Consensus        85 ~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~  141 (179)
T d2ff4a2          85 AVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP  141 (179)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred             HHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCH
Confidence            999999999999999999999999999999999999999999854     5777664

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=1.4e-06  Score=87.90  Aligned_cols=146  Identities=8%  Similarity=-0.041  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHH--HhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHhhhcCCHHHHHHH
Q 037816          441 FKALELYEEMKLEGVEPTDVTFLSLLHA--CSHVGLVNKGMEFLKSMTEVHRISP-RAEHYACVVDMVGRAGLLIEARSF  517 (648)
Q Consensus       441 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~--~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~  517 (648)
                      ..+.+.++...+....++..-....+..  ....+.++.++..++...   ++.| +...+..+...+.+.|+.++|...
T Consensus        66 ~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~---~l~~~~~~~~~~lg~~~~~~~~~~~A~~~  142 (497)
T d1ya0a1          66 KNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVF---NVDLPCRVKSSQLGIISNKQTHTSAIVKP  142 (497)
T ss_dssp             HHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC----------------------------------
T ss_pred             HHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCChhhHHHHHHhHHHHHhCCCHHHHHHH
Confidence            4455555555543333332222111111  122344555554444442   3333 555666777777777777777766


Q ss_pred             HHhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816          518 IERMPVKPD-VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       518 ~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  590 (648)
                      +++. +.++ ..++..+...+...|++++|+..|+++++.+|++..+|+.++.++...|++.+|+..|.+....
T Consensus       143 ~~~a-l~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~  215 (497)
T d1ya0a1         143 QSSS-CSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV  215 (497)
T ss_dssp             CCHH-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred             HHHH-hCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence            6554 1111 2456667777778888888888888888888888888888888888888888888888777653

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.83  E-value=0.008  Score=53.83  Aligned_cols=95  Identities=17%  Similarity=0.040  Sum_probs=66.0

Q ss_pred             chhHHHHHHHHHHhcCCHHHHHHHHHhccC-CCcccHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 037816          291 DLCIESALMDMYSKCGSVEDAWQIFEFAEE-LDGVSMTVILVGFAQ----NGFEEEAMQLFVKMVKAGIEIDPNMVSAVL  365 (648)
Q Consensus       291 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll  365 (648)
                      |+..+..|...+...+++++|+++|++..+ .+..++..|...|..    ..+...|...+......+.+   .....+.
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~---~a~~~l~   77 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYS---NGCHLLG   77 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccccc---chhhccc
Confidence            345667788888899999999999998865 356666667777766    56888999999888876632   2222222


Q ss_pred             HHH----hccCChhHHHHHHHHHHHhC
Q 037816          366 GVF----GVDTSLGLGKQIHSLIIKSD  388 (648)
Q Consensus       366 ~~~----~~~~~~~~a~~~~~~~~~~~  388 (648)
                      ..+    ....+.+.|...++...+.|
T Consensus        78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g  104 (265)
T d1ouva_          78 NLYYSGQGVSQNTNKALQYYSKACDLK  104 (265)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             cccccccccchhhHHHHHHHhhhhhhh
Confidence            222    23456677777777777665

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.82  E-value=6.6e-05  Score=57.76  Aligned_cols=87  Identities=9%  Similarity=-0.101  Sum_probs=43.4

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCC
Q 037816          431 IAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGL  510 (648)
Q Consensus       431 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  510 (648)
                      ...+.+.|++++|+..|++..+.. +-+...|..+..++.+.|++++|+..+++..+.  .+.+...+..+...|...|+
T Consensus        23 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~la~~y~~~g~   99 (112)
T d1hxia_          23 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEHN   99 (112)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhccccccccc--ccccccchHHHHHHHHHCCC
Confidence            334445555555555555555532 113445555555555555555555555555442  12244455555555555555


Q ss_pred             HHHHHHHHHh
Q 037816          511 LIEARSFIER  520 (648)
Q Consensus       511 ~~~A~~~~~~  520 (648)
                      +++|.+.+++
T Consensus       100 ~~~A~~~l~~  109 (112)
T d1hxia_         100 ANAALASLRA  109 (112)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5555555443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.72  E-value=7.1e-05  Score=61.72  Aligned_cols=87  Identities=20%  Similarity=0.042  Sum_probs=62.8

Q ss_pred             HhhhcCCHHHHHHHHHhC----CCCCC----------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---------
Q 037816          504 MVGRAGLLIEARSFIERM----PVKPD----------VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS---------  560 (648)
Q Consensus       504 ~~~~~g~~~~A~~~~~~~----~~~p~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---------  560 (648)
                      .+...|++++|++.|++.    +..|+          ..+|+.+..+|...|++++|+..++++++..|..         
T Consensus        18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~   97 (156)
T d2hr2a1          18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK   97 (156)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence            344555555555555554    11121          3567788888999999999999999888654321         


Q ss_pred             --CccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816          561 --PAPYILMANIYSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       561 --~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  590 (648)
                        ..++..++.+|...|++++|++.|++..+.
T Consensus        98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l  129 (156)
T d2hr2a1          98 LWISAVYSRALALDGLGRGAEAMPEFKKVVEM  129 (156)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence              236788999999999999999999998763

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.70  E-value=4e-05  Score=62.24  Aligned_cols=44  Identities=9%  Similarity=0.075  Sum_probs=33.2

Q ss_pred             ChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037816          542 DSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGV  592 (648)
Q Consensus       542 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~  592 (648)
                      .+++|.+.|+++++.+|++...+..+...       ..|.+++.+..+.|+
T Consensus       101 ~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ka~~~~~e~~k~~~  144 (145)
T d1zu2a1         101 NFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AKAPQLHAEAYKQGL  144 (145)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HTHHHHHHHHHHSSS
T ss_pred             hHHHhhhhhhcccccCCCHHHHHHHHHHH-------HHHHHHHHHHHHHhc
Confidence            46889999999999999987666665444       466777777777664

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=0.00029  Score=55.52  Aligned_cols=58  Identities=16%  Similarity=0.019  Sum_probs=32.7

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 037816          429 SMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTE  487 (648)
Q Consensus       429 ~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~  487 (648)
                      .+...+.+.|++++|+..|.+.++.+ +.+...+..+..+|.+.|++++|...++++.+
T Consensus         9 ~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   66 (128)
T d1elra_           9 ELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIE   66 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHH
Confidence            34445555666666666666665543 22455555555666666666666666666544

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=0.00016  Score=53.51  Aligned_cols=70  Identities=16%  Similarity=0.076  Sum_probs=51.3

Q ss_pred             HHHHHhhhcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHH
Q 037816          500 CVVDMVGRAGLLIEARSFIERM--------PVKPD-VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMAN  569 (648)
Q Consensus       500 ~l~~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~  569 (648)
                      .+...+.+.|++++|...|++.        ...++ ..++..+..++.+.|++++|+..++++++.+|+++.++..+..
T Consensus        10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~   88 (95)
T d1tjca_          10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKY   88 (95)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence            4455555666666665555544        11222 5678889999999999999999999999999999888877754

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.44  E-value=0.0002  Score=64.46  Aligned_cols=127  Identities=13%  Similarity=-0.053  Sum_probs=88.1

Q ss_pred             HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHhhhcCCHHH
Q 037816          435 ARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISP-RAEHYACVVDMVGRAGLLIE  513 (648)
Q Consensus       435 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~  513 (648)
                      .+.|++++|+..+++.++.. +-|...+..+...++..|++++|...++...+.   .| +...+..+...+...+..++
T Consensus         7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARKD   82 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccccHH
Confidence            45788999999999988864 336788888889999999999999999998774   45 45555555555555555555


Q ss_pred             HHHHHHhC--CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHH
Q 037816          514 ARSFIERM--PVKPD-VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYI  565 (648)
Q Consensus       514 A~~~~~~~--~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~  565 (648)
                      +..-....  ...|+ ...+......+...|+.++|.+.++++.+..|..+..++
T Consensus        83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~  137 (264)
T d1zbpa1          83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN  137 (264)
T ss_dssp             HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred             HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcccc
Confidence            44332222  11232 233344455677889999999999999998888765543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.37  E-value=7.6e-05  Score=60.50  Aligned_cols=50  Identities=10%  Similarity=0.092  Sum_probs=43.7

Q ss_pred             CChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCC-----------hHHHHHHHHHHHhC
Q 037816          541 GDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGR-----------WKERAKAIKRMKEM  590 (648)
Q Consensus       541 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~m~~~  590 (648)
                      +.+++|+..++++++++|+++.+|..++.+|...|+           +++|.+.|++..+.
T Consensus        55 ~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l  115 (145)
T d1zu2a1          55 QMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE  115 (145)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc
Confidence            456889999999999999999999999999987664           68899999988773

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.33  E-value=0.0012  Score=53.93  Aligned_cols=93  Identities=12%  Similarity=0.001  Sum_probs=58.6

Q ss_pred             HHhccCcHHHHHHHHHHhHHhcCCCCC----------hhHHHHHHHHhhhcCCHHHHHHHHHhC--------CCCCC---
Q 037816          468 ACSHVGLVNKGMEFLKSMTEVHRISPR----------AEHYACVVDMVGRAGLLIEARSFIERM--------PVKPD---  526 (648)
Q Consensus       468 ~~~~~g~~~~A~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~---  526 (648)
                      .+...|++++|++.|++..+...-.|+          ...|+.+..+|.+.|++++|.+.+++.        ...++   
T Consensus        18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~   97 (156)
T d2hr2a1          18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK   97 (156)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence            344556666666666666543211121          245666677777777777776666554        12222   


Q ss_pred             --HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 037816          527 --VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS  560 (648)
Q Consensus       527 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~  560 (648)
                        ...+..+..+|...|++++|+..|++++++.|..
T Consensus        98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          98 LWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence              2246667888999999999999999998876543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=0.0009  Score=49.21  Aligned_cols=63  Identities=10%  Similarity=-0.052  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-------CccHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037816          528 LVWQALLGACSIHGDSEMGKYAAEKLFLAQPDS-------PAPYILMANIYSCSGRWKERAKAIKRMKEM  590 (648)
Q Consensus       528 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  590 (648)
                      ..+-.+...+.+.|+++.|+..++++++..|.+       ..++..++.++.+.|++++|++.++++++.
T Consensus         6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l   75 (95)
T d1tjca_           6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (95)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence            344567888999999999999999998776543       346889999999999999999999999874

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.25  E-value=0.0028  Score=52.87  Aligned_cols=72  Identities=11%  Similarity=0.094  Sum_probs=52.7

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHH----hcCCCCChhH
Q 037816          425 VSWNSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTE----VHRISPRAEH  497 (648)
Q Consensus       425 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~  497 (648)
                      ..+..+...+...|++++|+..++++.+.. +-+...|..++.++...|+.++|++.|+++.+    ..|+.|+..+
T Consensus        68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          68 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence            456667777888888888888888887754 33677788888888888888888888887643    2377776654

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.18  E-value=0.00015  Score=65.16  Aligned_cols=121  Identities=10%  Similarity=0.083  Sum_probs=85.9

Q ss_pred             HhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChHHH
Q 037816          469 CSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIEARSFIERM-PVKPD-VLVWQALLGACSIHGDSEMG  546 (648)
Q Consensus       469 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A  546 (648)
                      ..+.|++++|+..+++..+  .-+.+...+..+...|+..|++++|.+.++.. ...|+ ...+..+...+...+..+++
T Consensus         6 aL~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a   83 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF   83 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence            4567999999999999988  34558999999999999999999999999998 56665 44444444444433333332


Q ss_pred             HHHHHHHHh-cCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037816          547 KYAAEKLFL-AQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMG  591 (648)
Q Consensus       547 ~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  591 (648)
                      ......... ..|++...+...+..+...|++++|.+.++++.+..
T Consensus        84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~  129 (264)
T d1zbpa1          84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR  129 (264)
T ss_dssp             TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence            222111111 224344455666778889999999999999987753

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.00013  Score=73.02  Aligned_cols=108  Identities=12%  Similarity=-0.010  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCHHHHHHHHhhcC---CCChhHHHHHHHHH
Q 037816          358 PNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFTSNPFVNNGLINMYSKCGDLEDSIKVFSRMA---PRNSVSWNSMIAAF  434 (648)
Q Consensus       358 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~  434 (648)
                      ...+..+...+.+.|+.+.|...+.......   ....+..+...+...|++++|...|.+..   +.+..+|+.|...+
T Consensus       120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~  196 (497)
T d1ya0a1         120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILA  196 (497)
T ss_dssp             -----------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence            3444455555556666666665555444322   12345556666666677777776666554   23455666666666


Q ss_pred             HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037816          435 ARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHAC  469 (648)
Q Consensus       435 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~  469 (648)
                      ...|+..+|+..|.+..... +|-..++..|...+
T Consensus       197 ~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~  230 (497)
T d1ya0a1         197 SSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKAL  230 (497)
T ss_dssp             HHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHH
Confidence            66777777776666666543 34555555555544

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=96.84  E-value=0.24  Score=47.77  Aligned_cols=54  Identities=11%  Similarity=-0.069  Sum_probs=27.9

Q ss_pred             HHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 037816          299 MDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAG  353 (648)
Q Consensus       299 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  353 (648)
                      +..+.+.++++.....+..-+ .+...-.....+....|+...|...+..+-..|
T Consensus        79 l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~  132 (450)
T d1qsaa1          79 VNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG  132 (450)
T ss_dssp             HHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred             HHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence            444555666655444332211 122223345556666777777776666655443

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=96.74  E-value=0.063  Score=39.84  Aligned_cols=141  Identities=10%  Similarity=0.012  Sum_probs=109.8

Q ss_pred             HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhhcCCHHH
Q 037816          434 FARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGRAGLLIE  513 (648)
Q Consensus       434 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  513 (648)
                      +.-.|..++..+++.+....   .+..-|+.+|--....-+-+...++++.+-+-+.+.              .++++..
T Consensus        12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls--------------~C~Nlk~   74 (161)
T d1wy6a1          12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKS   74 (161)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHH
T ss_pred             HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCch--------------hhhcHHH
Confidence            45578889999999888863   466778888877778888888888888886644333              3455555


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 037816          514 ARSFIERMPVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKAIKRMKEMGVD  593 (648)
Q Consensus       514 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~  593 (648)
                      ....+-.++  .+...++..+.....+|.-+.-.++++.+++.+..+|.....++.+|.+.|...++-+++.+..+.|++
T Consensus        75 vv~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K  152 (161)
T d1wy6a1          75 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK  152 (161)
T ss_dssp             HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence            555555552  345566777888899999999999999988888888899999999999999999999999999998863

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.87  E-value=0.034  Score=41.93  Aligned_cols=65  Identities=6%  Similarity=-0.003  Sum_probs=38.6

Q ss_pred             CCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcCCCCC-ccHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037816          525 PDVLVWQALLGACSIHG---DSEMGKYAAEKLFLAQPDSP-APYILMANIYSCSGRWKERAKAIKRMKE  589 (648)
Q Consensus       525 p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~  589 (648)
                      |...+--...+++.++.   +.++|+.+++.+.+.+|.+. ..+..++-+|.+.|++++|.++++++++
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~  101 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE  101 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence            34444444555555443   34566666666666666543 4556666666666777777666666655

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=95.46  E-value=0.087  Score=40.82  Aligned_cols=82  Identities=7%  Similarity=-0.098  Sum_probs=51.5

Q ss_pred             CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHh----cCChHHH
Q 037816          509 GLLIEARSFIERMPVKPDVLVWQALLGACSI----HGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSC----SGRWKER  580 (648)
Q Consensus       509 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A  580 (648)
                      .+.++|.+.+++....-++.....|...|..    ..+.++|.++|+++.+..  ++.+...|+..|..    ..+.++|
T Consensus        37 ~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A  114 (133)
T d1klxa_          37 INKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQA  114 (133)
T ss_dssp             SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred             cCHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHH
Confidence            4555666666555112234444445444443    346778888888877654  34567777777765    3578888


Q ss_pred             HHHHHHHHhCCC
Q 037816          581 AKAIKRMKEMGV  592 (648)
Q Consensus       581 ~~~~~~m~~~~~  592 (648)
                      .+++++..+.|.
T Consensus       115 ~~~~~~Aa~~G~  126 (133)
T d1klxa_         115 VKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHCCC
Confidence            888888887774

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=93.56  E-value=0.53  Score=36.01  Aligned_cols=113  Identities=14%  Similarity=-0.022  Sum_probs=74.1

Q ss_pred             CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhh----cCCHHH
Q 037816          438 GNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR----AGLLIE  513 (648)
Q Consensus       438 ~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~  513 (648)
                      .++++|+.+|++..+.|. +..  ...|.  .....+.++|..++++..+. |   ++.....|...|..    ..+.++
T Consensus         7 kd~~~A~~~~~kaa~~g~-~~a--~~~l~--~~~~~~~~~a~~~~~~aa~~-g---~~~a~~~Lg~~y~~g~~~~~d~~~   77 (133)
T d1klxa_           7 KDLKKAIQYYVKACELNE-MFG--CLSLV--SNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLRK   77 (133)
T ss_dssp             HHHHHHHHHHHHHHHTTC-TTH--HHHHH--TCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred             cCHHHHHHHHHHHHHCCC-hhh--hhhhc--cccccCHHHHHHHHhhhhcc-c---chhhhhhHHHhhhhccccchhhHH
Confidence            367788888888887762 222  22222  23456788888888888763 3   44455556665554    457889


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCC
Q 037816          514 ARSFIERMPVKPDVLVWQALLGACSI----HGDSEMGKYAAEKLFLAQPD  559 (648)
Q Consensus       514 A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~  559 (648)
                      |.++|++.-..-++.....|...|..    ..+.++|..+++++.+....
T Consensus        78 A~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~  127 (133)
T d1klxa_          78 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE  127 (133)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCH
Confidence            99999887222345566666666665    45889999999998776543

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.60  E-value=0.42  Score=35.70  Aligned_cols=71  Identities=10%  Similarity=-0.034  Sum_probs=48.4

Q ss_pred             CChhHHHHHHHHhhhcC---CHHHHHHHHHhC-CCCC-C-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCcc
Q 037816          493 PRAEHYACVVDMVGRAG---LLIEARSFIERM-PVKP-D-VLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAP  563 (648)
Q Consensus       493 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  563 (648)
                      |+..+--....++++..   +.++++.++++. ...| + ...+-.|.-+|.+.|++++|...++++++.+|.+..+
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA  109 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV  109 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHH
Confidence            34444444555555443   455677777776 2234 3 3466677778999999999999999999999998544

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=92.20  E-value=4.9  Score=37.94  Aligned_cols=349  Identities=9%  Similarity=-0.027  Sum_probs=195.5

Q ss_pred             HHHHhHhcCChhHHHHHhcccCCCCcccHHHHHHHHHHCCCchHHHHHHHHHHhCC-CCCChhhHHHHHHHhhccCChHH
Q 037816          197 LITSYFKCGSSSSGRKVFGEMRVRNVITWTAVISGLVQNQLYEEGLKLFVKMHLGL-INPNSLTYLSSVMACSGLQALCE  275 (648)
Q Consensus       197 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~~~~~~  275 (648)
                      .+..+.+.++++.....+..-+ .+...-.....+....|+..+|.+.+..+-..| ..|+                  .
T Consensus        78 ~l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~------------------~  138 (450)
T d1qsaa1          78 FVNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPN------------------A  138 (450)
T ss_dssp             HHHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCT------------------H
T ss_pred             HHHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCch------------------H
Confidence            3455667777777776664322 233333456677788899888888887774433 2222                  2


Q ss_pred             HHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 037816          276 GRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDAWQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIE  355 (648)
Q Consensus       276 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~  355 (648)
                      +..+++.+.+.|. .+...+-.-+......|+...|..+...+...........+.....   ...+.....   .  ..
T Consensus       139 c~~l~~~~~~~~~-lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~---p~~~~~~~~---~--~~  209 (450)
T d1qsaa1         139 CDKLFSVWRASGK-QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFAR---T--TG  209 (450)
T ss_dssp             HHHHHHHHHHTTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHH---H--SC
T ss_pred             HHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhC---hHhHHHHHh---c--CC
Confidence            3334444444443 3333333455566677888888888887765444444444444322   222222211   1  12


Q ss_pred             cCHHHHHHHHHHHhc--cCChhHHHHHHHHHHHhCCCCchhHHHH----HHHHHHhCCCHHHHHHHHhhcC--CCChhHH
Q 037816          356 IDPNMVSAVLGVFGV--DTSLGLGKQIHSLIIKSDFTSNPFVNNG----LINMYSKCGDLEDSIKVFSRMA--PRNSVSW  427 (648)
Q Consensus       356 p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~----li~~~~~~g~~~~A~~~~~~~~--~~~~~~~  427 (648)
                      ++......+..++.+  ..+.+.+..++........... .-...    +...+...+..+.+...+....  ..+....
T Consensus       210 ~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  288 (450)
T d1qsaa1         210 ATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNE-DQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLI  288 (450)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHH
T ss_pred             CChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccH-HHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHH
Confidence            333333333333332  2467777777777665432222 22222    2222234456677766665443  2344433


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHhhh
Q 037816          428 NSMIAAFARHGNGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVDMVGR  507 (648)
Q Consensus       428 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  507 (648)
                      .-.+......+++..+...+..|... ......-.--+..++...|+.+.|...|..+..    .++  .|..|...-  
T Consensus       289 ~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~----~~~--fYG~LAa~~--  359 (450)
T d1qsaa1         289 ERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ----QRG--FYPMVAAQR--  359 (450)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SCS--HHHHHHHHH--
T ss_pred             HHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc----CCC--hHHHHHHHH--
Confidence            44455566778999999888877532 122344455677889999999999999999854    233  455443221  


Q ss_pred             cCCHHHHHHHHHhCCCCCC-HHHH---HHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHHHHHhcCChHHHHHH
Q 037816          508 AGLLIEARSFIERMPVKPD-VLVW---QALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMANIYSCSGRWKERAKA  583 (648)
Q Consensus       508 ~g~~~~A~~~~~~~~~~p~-~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  583 (648)
                      .|..-.. . .......++ ...-   ..-+..+...|....|...+..+.+..  ++.-...++....+.|.++.|+..
T Consensus       360 Lg~~~~~-~-~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI~a  435 (450)
T d1qsaa1         360 IGEEYEL-K-IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQA  435 (450)
T ss_dssp             TTCCCCC-C-CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCCCCCC-C-cCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHHHHH
Confidence            1210000 0 000011111 1111   122455778899999999998887643  355777888999999999999987


Q ss_pred             HHHH
Q 037816          584 IKRM  587 (648)
Q Consensus       584 ~~~m  587 (648)
                      ..+.
T Consensus       436 ~~~~  439 (450)
T d1qsaa1         436 TIAG  439 (450)
T ss_dssp             HHHT
T ss_pred             HHHH
Confidence            7665

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=92.08  E-value=1.6  Score=32.18  Aligned_cols=141  Identities=11%  Similarity=0.050  Sum_probs=88.7

Q ss_pred             HHHCCCchHHHHHHHHHHhCCCCCChhhHHHHHHHhhccCChHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCHHHH
Q 037816          232 LVQNQLYEEGLKLFVKMHLGLINPNSLTYLSSVMACSGLQALCEGRQIHGILWKLALQSDLCIESALMDMYSKCGSVEDA  311 (648)
Q Consensus       232 ~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  311 (648)
                      +...|..++..+++.+....   .+..-|+.++.-....-+-+-..++++.+   |-..|..          .++++...
T Consensus        12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~I---G~~FDls----------~C~Nlk~v   75 (161)
T d1wy6a1          12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKI---GSYFDLD----------KCQNLKSV   75 (161)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHH---GGGSCGG----------GCSCTHHH
T ss_pred             HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHH---hhhcCch----------hhhcHHHH
Confidence            45567788888888777552   45556777776665555555554444433   3222221          22233333


Q ss_pred             HHHHHhccCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhccCChhHHHHHHHHHHHhCCC
Q 037816          312 WQIFEFAEELDGVSMTVILVGFAQNGFEEEAMQLFVKMVKAGIEIDPNMVSAVLGVFGVDTSLGLGKQIHSLIIKSDFT  390 (648)
Q Consensus       312 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  390 (648)
                      ...+-.+.. +....+..+..+..+|+-+.-.++++.+.+.+ +|++.....+..+|.+.|...++.+++.++-+.|.+
T Consensus        76 v~C~~~~n~-~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K  152 (161)
T d1wy6a1          76 VECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGEK  152 (161)
T ss_dssp             HHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHhcc-hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence            332222221 33344556677888888888888888877644 788888888889999999999998888888877753

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.23  E-value=2.2  Score=29.78  Aligned_cols=60  Identities=17%  Similarity=0.087  Sum_probs=45.3

Q ss_pred             CHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCccHHHHHH
Q 037816          510 LLIEARSFIERM---PVKPDVLVWQALLGACSIHGDSEMGKYAAEKLFLAQPDSPAPYILMAN  569 (648)
Q Consensus       510 ~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~  569 (648)
                      +.-++.+-++.+   ..-|++....+.+++|.+.+|+..|+++++.+......+...|..+.+
T Consensus        21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yilq   83 (105)
T d1v54e_          21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ   83 (105)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            344444444444   677999999999999999999999999999998666445567766544

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.61  E-value=1.3  Score=30.94  Aligned_cols=63  Identities=14%  Similarity=0.256  Sum_probs=50.4

Q ss_pred             ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 037816          439 NGFKALELYEEMKLEGVEPTDVTFLSLLHACSHVGLVNKGMEFLKSMTEVHRISPRAEHYACVVD  503 (648)
Q Consensus       439 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~  503 (648)
                      +.-++.+-+..+....+-|++....+.+++|.+.+++..|.++++.++.+  ..++...|..+++
T Consensus        21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K--~~~~k~~y~yilq   83 (105)
T d1v54e_          21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ   83 (105)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCcHHHHHHHHH
Confidence            44466677777777888999999999999999999999999999999875  3345667776654