Citrus Sinensis ID: 037911
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 609 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FND8 | 610 | Pentatricopeptide repeat- | yes | no | 0.955 | 0.954 | 0.557 | 0.0 | |
| Q9LFC5 | 729 | Pentatricopeptide repeat- | no | no | 0.883 | 0.737 | 0.263 | 9e-62 | |
| Q9FIX3 | 747 | Pentatricopeptide repeat- | no | no | 0.858 | 0.700 | 0.287 | 3e-60 | |
| Q0WVK7 | 741 | Pentatricopeptide repeat- | no | no | 0.926 | 0.761 | 0.251 | 1e-58 | |
| P0C894 | 761 | Putative pentatricopeptid | no | no | 0.725 | 0.580 | 0.316 | 4e-57 | |
| Q9LVQ5 | 1096 | Pentatricopeptide repeat- | no | no | 0.789 | 0.438 | 0.288 | 2e-55 | |
| O04491 | 607 | Putative pentatricopeptid | no | no | 0.801 | 0.803 | 0.291 | 2e-54 | |
| Q9ZQF1 | 627 | Pentatricopeptide repeat- | no | no | 0.686 | 0.666 | 0.304 | 7e-54 | |
| Q9LSL9 | 915 | Pentatricopeptide repeat- | no | no | 0.873 | 0.581 | 0.265 | 3e-53 | |
| O04504 | 606 | Pentatricopeptide repeat- | no | no | 0.852 | 0.856 | 0.272 | 5e-53 |
| >sp|Q9FND8|PP409_ARATH Pentatricopeptide repeat-containing protein At5g40400 OS=Arabidopsis thaliana GN=At5g40400 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 650 bits (1678), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/601 (55%), Positives = 438/601 (72%), Gaps = 19/601 (3%)
Query: 14 NFISKLAFSSFSSASSSYSLQIIQDSEHKSLSNPLYNFLPETQNPNKIVDLICSSLKKGD 73
N +S L F FSS SSS + + K + NPLYN LP++QNP+KIVD+ICS+L D
Sbjct: 3 NLVSNLRF--FSSYSSSIVPRC--SNIPKPILNPLYNLLPQSQNPSKIVDVICSTLNHSD 58
Query: 74 SHLTL--LQNDLKPLLPHLGAHEISRVLLRCQSDSVSALTFFNWVKNDLEIKPTSSNYCL 131
+ L L++++K L+PHLG EISRVLLR QSD+ A+TFF WVK DL +P NYCL
Sbjct: 59 YSVLLPNLRDEVKSLIPHLGYPEISRVLLRFQSDASRAITFFKWVKFDLGKRPNVGNYCL 118
Query: 132 IVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNW----------AYV 181
++HIL + KF AM+ LCEL+EL VDVF+ L+S T++CNW Y+
Sbjct: 119 LLHILVSSKKFPLAMQFLCELIELTSK-KEEVDVFRVLVSATDECNWDPVVFDMLVKGYL 177
Query: 182 KVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTH 241
K+GL+ E F+ FR+ LD GF S+V+CN LLNGLLKL+ ++ CWQVY M R+GI PNT+
Sbjct: 178 KLGLVEEGFRVFREVLDSGFSVSVVTCNHLLNGLLKLDLMEDCWQVYSVMCRVGIHPNTY 237
Query: 242 TFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIM 301
TFNILT+VFC + + +V+ FLEK+EEEGF+PDLVTYNTL+SSYC++GRL +AFYLY+IM
Sbjct: 238 TFNILTNVFCNDSNFREVDDFLEKMEEEGFEPDLVTYNTLVSSYCRRGRLKEAFYLYKIM 297
Query: 302 YRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKM 361
YRR V+PDLVTYT+L+ GLCK+G+VREAHQ FHRMV RG+ PD +SYNTLI+AYCKEG M
Sbjct: 298 YRRRVVPDLVTYTSLIKGLCKDGRVREAHQTFHRMVDRGIKPDCMSYNTLIYAYCKEGMM 357
Query: 362 QESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYL 421
Q+SK LL+EM+GN + PD FTC++IV+G+ +EGRLLSA+N VVEL+R V I ++ D+L
Sbjct: 358 QQSKKLLHEMLGNSVVPDRFTCKVIVEGFVREGRLLSAVNFVVELRRLKVDIPFEVCDFL 417
Query: 422 IVALCQDNRPFAATSLLER-IGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRN 480
IV+LCQ+ +PFAA LL+R I ++G+ E YN L+ESL +CD++ +AL+LK ++ ++N
Sbjct: 418 IVSLCQEGKPFAAKHLLDRIIEEEGHEAKPETYNNLIESLSRCDAIEEALVLKGKLKNQN 477
Query: 481 IKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAE 540
TYRALI C C IGR+ EA SLM EM +S + PDS IC L+ GYC E D +KAE
Sbjct: 478 QVLDAKTYRALIGCLCRIGRNREAESLMAEMFDSEVKPDSFICGALVYGYCKELDFDKAE 537
Query: 541 ALLGFFAKKFQIYDTESYNAVFNMFAEDG-DLSKLMELQKRFLRLGFAPNNLTCKYMIHS 599
LL FA +F+I+D ESYN++ E G K +ELQ+R RLGF PN LTCKY+I
Sbjct: 538 RLLSLFAMEFRIFDPESYNSLVKAVCETGCGYKKALELQERMQRLGFVPNRLTCKYLIQV 597
Query: 600 L 600
L
Sbjct: 598 L 598
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110 OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 238 bits (608), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 166/630 (26%), Positives = 283/630 (44%), Gaps = 92/630 (14%)
Query: 61 IVDLICSSLKKGDSHLTLLQNDLKPLLPHLGAHEISRVLLRCQSDSVSALTFFNWVKNDL 120
+V+ IC SLK+G+ N+++ L L + VL RC++D F + +
Sbjct: 54 LVEKICFSLKQGN-------NNVRNHLIRLNPLAVVEVLYRCRNDLTLGQRFVDQLGFHF 106
Query: 121 -EIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCN-- 177
K TS + ++HIL + + S A L ++ + +++ L S +C
Sbjct: 107 PNFKHTSLSLSAMIHILVRSGRLSDAQSCLLRMIR--RSGVSRLEIVNSLDSTFSNCGSN 164
Query: 178 --------WAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYE 229
YV+ +RE+ + F GF SI +CN L+ L+++ ++ W VY+
Sbjct: 165 DSVFDLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQ 224
Query: 230 EMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKG 289
E+ R G+ N +T NI+ + CK+G ++KV FL +++E+G PD+VTYNTLIS+Y KG
Sbjct: 225 EISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKG 284
Query: 290 RLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYN 349
+ +AF L M + P + TY T++NGLCK GK A ++F M+ GLSPD +Y
Sbjct: 285 LMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYR 344
Query: 350 TLIFAYCKEGKMQESKSLLYEMM---------------------GN-------------- 374
+L+ CK+G + E++ + +M GN
Sbjct: 345 SLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEA 404
Query: 375 GIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAA 434
G+ PD I++QGY ++G + A+NL E+ + G ++ Y+ ++ LC+ A
Sbjct: 405 GLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEA 464
Query: 435 TSLLERIGQDGYVP--------------------SLEI---------------YNELMES 459
L + + P ++E+ YN L++
Sbjct: 465 DKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDG 524
Query: 460 LCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPD 519
K + A + +MV + I P+ +Y L+ C G EA + DEM+ + P
Sbjct: 525 FGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPT 584
Query: 520 SQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQK 579
IC +I GYC + + E+ L + + D SYN + F + ++SK L K
Sbjct: 585 VMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVK 644
Query: 580 RF--LRLGFAPNNLTCKYMIHSLWKGMERK 607
+ + G P+ T ++H + + K
Sbjct: 645 KMEEEQGGLVPDVFTYNSILHGFCRQNQMK 674
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 233 bits (594), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 167/580 (28%), Positives = 271/580 (46%), Gaps = 57/580 (9%)
Query: 72 GDSHLTLLQN---DLKPLLPHLGAHEISRVLLRCQSDSVSALTFFNWVKNDLEIKPTSSN 128
D LT L+ L L + S +LL+ Q+D L F NW T
Sbjct: 25 ADKALTFLKRHPYQLHHLSANFTPEAASNLLLKSQNDQALILKFLNWANPHQFF--TLRC 82
Query: 129 YCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNW---------- 178
C+ +HIL + A + ++ D ++ VF+ L + C
Sbjct: 83 KCITLHILTKFKLYKTAQILAEDVAAKTLDDEYASLVFKSLQETYDLCYSTSSVFDLVVK 142
Query: 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLK-LNCIDQCWQVYEEMGRIGIC 237
+Y ++ LI ++ GF P ++S N +L+ ++ I V++EM +
Sbjct: 143 SYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVS 202
Query: 238 PNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYL 297
PN T+NIL FC G++D +K+E +G P++VTYNTLI YCK +++D F L
Sbjct: 203 PNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKL 262
Query: 298 YRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCK 357
R M + + P+L++Y ++NGLC+EG+++E + M RG S D V+YNTLI YCK
Sbjct: 263 LRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCK 322
Query: 358 EGKMQESKSLLYEMMGNGIYPDTFT--------CQ------------------------- 384
EG ++ + EM+ +G+ P T C+
Sbjct: 323 EGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERT 382
Query: 385 --IIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIG 442
+V G+ ++G + A ++ E+ G S S Y+ LI C + A ++LE +
Sbjct: 383 YTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMK 442
Query: 443 QDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSG 502
+ G P + Y+ ++ C+ V +AL +K EMV++ IKP TY +LI FC R+
Sbjct: 443 EKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTK 502
Query: 503 EAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVF 562
EA L +EML G+ PD LIN YCME D+ KA L +K + D +Y+ +
Sbjct: 503 EACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLI 562
Query: 563 NMFAEDGDLSKLMELQKRFLRLGF---APNNLTCKYMIHS 599
N + S+ E ++ L+L + P+++T +I +
Sbjct: 563 NGLNKQ---SRTREAKRLLLKLFYEESVPSDVTYHTLIEN 599
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 228 bits (581), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 157/624 (25%), Positives = 282/624 (45%), Gaps = 60/624 (9%)
Query: 24 FSSASSSYSLQIIQDSEHKSLSNPLYNFLPETQNPNKIVDLICSSLKKGDSHLTLLQNDL 83
FS S S + D+ +P + +T+ ++I ++I L++ + L+ L
Sbjct: 25 FSLQSRGLSFSTLTDTRPFPDYSPKKASVRDTEFVHQITNVI--KLRRAEP----LRRSL 78
Query: 84 KPLLPHLGAHEISRVLLRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFS 143
KP + VL++ + D L FF+W ++ + S C+++H+ +
Sbjct: 79 KPYECKFKTDHLIWVLMKIKCDYRLVLDFFDWARSRRDSNLES--LCIVIHLAVASKDLK 136
Query: 144 FAMKMLCELVELVK-DCPHSVDVFQDLISCTEDCNWA------------YVKVGLIRESF 190
A ++ E K + S F DL+ T +W V GL+RE+
Sbjct: 137 VAQSLISSFWERPKLNVTDSFVQFFDLLVYTYK-DWGSDPRVFDVFFQVLVDFGLLREAR 195
Query: 191 KTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQ--VYEEMGRIGICPNTHTFNILTH 248
+ F K L+ G S+ SCN L L K +C V+ E +G+C N ++NI+ H
Sbjct: 196 RVFEKMLNYGLVLSVDSCNVYLTRLSK-DCYKTATAIIVFREFPEVGVCWNVASYNIVIH 254
Query: 249 VFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRN--- 305
C+ G + + + L +E +G+ PD+++Y+T+++ YC+ G L+ + L +M R+
Sbjct: 255 FVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKP 314
Query: 306 --------------------------------VLPDLVTYTTLMNGLCKEGKVREAHQLF 333
+LPD V YTTL++G CK G +R A + F
Sbjct: 315 NSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFF 374
Query: 334 HRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKE 393
+ M R ++PD+++Y +I +C+ G M E+ L +EM G+ PD+ T ++ GY K
Sbjct: 375 YEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKA 434
Query: 394 GRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIY 453
G + A + + + G S + Y LI LC++ +A LL + + G P++ Y
Sbjct: 435 GHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTY 494
Query: 454 NELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLE 513
N ++ LCK ++ +A+ L E + TY L+ +C G +A ++ EML
Sbjct: 495 NSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLG 554
Query: 514 SGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSK 573
G+ P VL+NG+C+ + E LL + K + ++N++ + +L
Sbjct: 555 KGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKA 614
Query: 574 LMELQKRFLRLGFAPNNLTCKYMI 597
+ K G P+ T + ++
Sbjct: 615 ATAIYKDMCSRGVGPDGKTYENLV 638
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 223 bits (568), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 145/458 (31%), Positives = 217/458 (47%), Gaps = 16/458 (3%)
Query: 95 ISRVLLRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVE 154
+ RVL+ + D A FF W K + +YC++ HIL + A +L E+V
Sbjct: 111 VPRVLVELKEDPKLAFKFFKWSMTRNGFKHSVESYCIVAHILFCARMYYDANSVLKEMVL 170
Query: 155 LVKDCPHSVDVFQDLISCTEDCNWAY----------VKVGLIRESFKTFRKTLDVGFQPS 204
DC DVF L S C + + +G++ E+ + F K P
Sbjct: 171 SKADC----DVFDVLWSTRNVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPK 226
Query: 205 IVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLE 264
SCN LL+ KL D + +++M G P T+NI+ CK GDV+ G E
Sbjct: 227 TRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFE 286
Query: 265 KIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEG 324
+++ G PD VTYN++I + K GRL+D + M PD++TY L+N CK G
Sbjct: 287 EMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFG 346
Query: 325 KVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQ 384
K+ + + M GL P++VSY+TL+ A+CKEG MQ++ +M G+ P+ +T
Sbjct: 347 KLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYT 406
Query: 385 IIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQD 444
++ K G L A L E+ + GV + Y LI LC R A L ++
Sbjct: 407 SLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTA 466
Query: 445 GYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEA 504
G +P+L YN L+ K ++ AL L +E+ R IKP L Y I C + + A
Sbjct: 467 GVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAA 526
Query: 505 VSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEAL 542
+M+EM E G+ +S I L++ Y K N E L
Sbjct: 527 KVVMNEMKECGIKANSLIYTTLMDAYF--KSGNPTEGL 562
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LVQ5|PP432_ARATH Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 217 bits (553), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 143/496 (28%), Positives = 236/496 (47%), Gaps = 15/496 (3%)
Query: 109 ALTFFNWV--KNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVF 166
AL F WV + LE C+ HIL + A +L EL + S VF
Sbjct: 53 ALKFLKWVVKQPGLETDHIVQLVCITTHILVRARMYDPARHILKELSLM---SGKSSFVF 109
Query: 167 QDLISCTEDCN----------WAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLL 216
L++ CN Y++ G+I++S + FR GF PS+ +CN +L ++
Sbjct: 110 GALMTTYRLCNSNPSVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVV 169
Query: 217 KLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLV 276
K W +EM + ICP+ TFNIL +V C G +K + ++K+E+ G+ P +V
Sbjct: 170 KSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIV 229
Query: 277 TYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRM 336
TYNT++ YCKKGR A L M + V D+ TY L++ LC+ ++ + + L M
Sbjct: 230 TYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDM 289
Query: 337 VHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRL 396
R + P+ V+YNTLI + EGK+ + LL EM+ G+ P+ T ++ G+ EG
Sbjct: 290 RKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNF 349
Query: 397 LSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNEL 456
AL + ++ G++ S Y L+ LC++ A R+ ++G Y +
Sbjct: 350 KEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGM 409
Query: 457 MESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGM 516
++ LCK + +A++L +EM I P + TY ALI FC +GR A ++ + G+
Sbjct: 410 IDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGL 469
Query: 517 LPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLME 576
P+ I LI C + +A + + D ++N + + G +++ E
Sbjct: 470 SPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEE 529
Query: 577 LQKRFLRLGFAPNNLT 592
+ G PN ++
Sbjct: 530 FMRCMTSDGILPNTVS 545
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O04491|PPR26_ARATH Putative pentatricopeptide repeat-containing protein At1g09680 OS=Arabidopsis thaliana GN=At1g09680 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 214 bits (544), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 147/504 (29%), Positives = 232/504 (46%), Gaps = 16/504 (3%)
Query: 83 LKPLLPHLGAHEISRVL----LRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAW 138
++ +LP L H + ++ L S+ A FF ++ + + T Y ++ LA
Sbjct: 73 IRKVLPSLSVHHVVDLINHNPLSLPQRSIFA--FFKFISSQPGFRFTVETYFVLARFLAV 130
Query: 139 NNKFSFAMKMLCELVELVKDCPHSVDVFQDLIS--CTEDCNW-------AYVKVGLIRES 189
+ F+ A + L ELV K + VF L+ T C + Y +G I ++
Sbjct: 131 HEMFTEA-QSLIELVVSRKGKNSASSVFISLVEMRVTPMCGFLVDALMITYTDLGFIPDA 189
Query: 190 FKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHV 249
+ FR + F I C LL+ ++KLN W Y E+ G N + FNIL +
Sbjct: 190 IQCFRLSRKHRFDVPIRGCGNLLDRMMKLNPTGTIWGFYMEILDAGFPLNVYVFNILMNK 249
Query: 250 FCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPD 309
FCK G++ ++I + P +V++NTLI+ YCK G L++ F L M + PD
Sbjct: 250 FCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPD 309
Query: 310 LVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLY 369
+ TY+ L+N LCKE K+ AH LF M RGL P+ V + TLI + + G++ K
Sbjct: 310 VFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQ 369
Query: 370 EMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDN 429
+M+ G+ PD +V G+ K G L++A N+V + R G+ + Y LI C+
Sbjct: 370 KMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGG 429
Query: 430 RPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYR 489
A + + + Q+G ++ L+ +CK V DA EM+ IKP TY
Sbjct: 430 DVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYT 489
Query: 490 ALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKK 549
++ FC G + L+ EM G +P VL+NG C + A+ LL
Sbjct: 490 MMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNI 549
Query: 550 FQIYDTESYNAVFNMFAEDGDLSK 573
+ D +YN + + SK
Sbjct: 550 GVVPDDITYNTLLEGHHRHANSSK 573
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZQF1|PP152_ARATH Pentatricopeptide repeat-containing protein At2g15630, mitochondrial OS=Arabidopsis thaliana GN=At2g15630 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 212 bits (539), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 128/421 (30%), Positives = 207/421 (49%), Gaps = 3/421 (0%)
Query: 185 LIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFN 244
++ E+ + F + GF P +CN +L L +LN I+ W Y +M R+ I N +TFN
Sbjct: 170 MVDEAIECFYLMKEKGFYPKTETCNHILTLLSRLNRIENAWVFYADMYRMEIKSNVYTFN 229
Query: 245 ILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRR 304
I+ +V CK G + K GFL +E G P +VTYNTL+ + +GR+ A + M +
Sbjct: 230 IMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGRIEGARLIISEMKSK 289
Query: 305 NVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQES 364
PD+ TY +++ +C EG+ A ++ M GL PD VSYN LI G ++ +
Sbjct: 290 GFQPDMQTYNPILSWMCNEGR---ASEVLREMKEIGLVPDSVSYNILIRGCSNNGDLEMA 346
Query: 365 KSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVA 424
+ EM+ G+ P +T ++ G E ++ +A L+ E++ G+ + Y+ LI
Sbjct: 347 FAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNILING 406
Query: 425 LCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPS 484
CQ A +L + + DG P+ Y L+ LC+ + +A L +++V + +KP
Sbjct: 407 YCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEKVVGKGMKPD 466
Query: 485 LSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLG 544
L L+ C IG A SL+ EM + PD L+ G C E +A L+G
Sbjct: 467 LVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKFEEARELMG 526
Query: 545 FFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMIHSLWKGM 604
++ D SYN + + +++ GD ++ L LGF P LT ++ L K
Sbjct: 527 EMKRRGIKPDHISYNTLISGYSKKGDTKHAFMVRDEMLSLGFNPTLLTYNALLKGLSKNQ 586
Query: 605 E 605
E
Sbjct: 587 E 587
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 210 bits (534), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 158/594 (26%), Positives = 272/594 (45%), Gaps = 62/594 (10%)
Query: 46 NPLYNFLPETQNPN-KIVDLICSSLKKGDSHLTLLQNDLKPLLPHLGAHEISRVLLRCQS 104
+PL LPE ++ + + + S L K + H + LK ++ + +S L
Sbjct: 46 SPLLRNLPEEESDSMSVPHRLLSILSKPNWHKS---PSLKSMVSAISPSHVSS-LFSLDL 101
Query: 105 DSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVD 164
D +AL F +W+ + K + +Y ++ +L N K+ +++
Sbjct: 102 DPKTALNFSHWISQNPRYKHSVYSYASLLTLLINNGYVGVVFKIRLLMIK---------- 151
Query: 165 VFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSC-NFLLNGLLKLNCIDQ 223
SC + YV + L R+ K R L I+ C N LLN L + +D+
Sbjct: 152 ------SCDSVGDALYV-LDLCRKMNKDERFELKYKL---IIGCYNTLLNSLARFGLVDE 201
Query: 224 CWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLIS 283
QVY EM +CPN +T+N + + +CK G+V++ N ++ KI E G DPD TY +LI
Sbjct: 202 MKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIM 261
Query: 284 SYCKKGRLNDAFYLYRIMY----RRN-------------------------------VLP 308
YC++ L+ AF ++ M RRN P
Sbjct: 262 GYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFP 321
Query: 309 DLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLL 368
+ TYT L+ LC + EA L M G+ P+I +Y LI + C + K ++++ LL
Sbjct: 322 TVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELL 381
Query: 369 YEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQD 428
+M+ G+ P+ T ++ GY K G + A+++V ++ +S + Y+ LI C+
Sbjct: 382 GQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKS 441
Query: 429 NRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTY 488
N A +L ++ + +P + YN L++ C+ + A L M DR + P TY
Sbjct: 442 N-VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTY 500
Query: 489 RALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAK 548
++I C R EA L D + + G+ P+ + LI+GYC V++A +L
Sbjct: 501 TSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLS 560
Query: 549 KFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMIHSLWK 602
K + ++ ++NA+ + DG L + L+++ +++G P T +IH L K
Sbjct: 561 KNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLK 614
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O04504|PPR27_ARATH Pentatricopeptide repeat-containing protein At1g09820 OS=Arabidopsis thaliana GN=At1g09820 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 209 bits (532), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 149/546 (27%), Positives = 264/546 (48%), Gaps = 27/546 (4%)
Query: 61 IVDLICSSLKKGDSHLTLLQNDLKPLLPHLGAHEISRVLLRCQSDSVSALTFFNWVKNDL 120
I DLI K+ S L + D+ P +E+ R L+ + D L +++W+ +
Sbjct: 46 IADLI---EKQHWSKLGVHVTDINP-------NELFRQLISSELDPDLCLRYYSWLVKNS 95
Query: 121 EIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSV-DVFQDLISCTEDCN-- 177
+I + ++H LA ++S L V D H V +F + C C
Sbjct: 96 DISVSLELTFKLLHSLANAKRYSKIRSFLDGFVRNGSD--HQVHSIFHAISMCDNVCVNS 153
Query: 178 -------WAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEE 230
AY F+ F+++ G++ S +SC L+ LLK N VY+E
Sbjct: 154 IIADMLVLAYANNSRFELGFEAFKRSGYYGYKLSALSCKPLMIALLKENRSADVEYVYKE 213
Query: 231 MGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCK--- 287
M R I PN TFN++ + CK G ++K +E ++ G P++V+YNTLI YCK
Sbjct: 214 MIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGG 273
Query: 288 KGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVS 347
G++ A + + M +V P+L T+ L++G K+ + + ++F M+ + + P+++S
Sbjct: 274 NGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVIS 333
Query: 348 YNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQ 407
YN+LI C GK+ E+ S+ +M+ G+ P+ T ++ G+ K L AL++ ++
Sbjct: 334 YNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVK 393
Query: 408 RFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVA 467
G + +Y+ LI A C+ + +L E + ++G VP + YN L+ LC+ ++
Sbjct: 394 GQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIE 453
Query: 468 DALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLI 527
A L D++ + + P L T+ L+ +C G S +A L+ EM + G+ P +++
Sbjct: 454 AAKKLFDQLTSKGL-PDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVM 512
Query: 528 NGYCMEKDVNKAEALLGFFAKKFQI-YDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGF 586
GYC E ++ A + K+ ++ + SYN + +++ G L L L G
Sbjct: 513 KGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGL 572
Query: 587 APNNLT 592
PN +T
Sbjct: 573 VPNRIT 578
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 609 | ||||||
| 255560884 | 623 | pentatricopeptide repeat-containing prot | 0.968 | 0.947 | 0.653 | 0.0 | |
| 224141281 | 626 | predicted protein [Populus trichocarpa] | 0.944 | 0.918 | 0.668 | 0.0 | |
| 147838532 | 676 | hypothetical protein VITISV_038361 [Viti | 0.937 | 0.844 | 0.650 | 0.0 | |
| 297734265 | 660 | unnamed protein product [Vitis vinifera] | 0.921 | 0.85 | 0.658 | 0.0 | |
| 449450197 | 632 | PREDICTED: pentatricopeptide repeat-cont | 0.935 | 0.901 | 0.589 | 0.0 | |
| 449483905 | 636 | PREDICTED: pentatricopeptide repeat-cont | 0.934 | 0.894 | 0.588 | 0.0 | |
| 356513957 | 626 | PREDICTED: pentatricopeptide repeat-cont | 0.937 | 0.912 | 0.585 | 0.0 | |
| 357495705 | 846 | Pentatricopeptide repeat-containing prot | 0.986 | 0.710 | 0.566 | 0.0 | |
| 297805650 | 608 | binding protein [Arabidopsis lyrata subs | 0.950 | 0.952 | 0.565 | 0.0 | |
| 145358679 | 610 | pentatricopeptide repeat-containing prot | 0.955 | 0.954 | 0.557 | 0.0 |
| >gi|255560884|ref|XP_002521455.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223539354|gb|EEF40945.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 822 bits (2123), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/604 (65%), Positives = 486/604 (80%), Gaps = 14/604 (2%)
Query: 14 NFISKLAFSSFSSASSSYSLQIIQDSEHKSLSNPLYNFLPETQNPNKIVDLICSSLKKGD 73
N I+ + FS+ S L I DS +SLSNPLY+ LP+TQNPN IV+++ SSLK+ +
Sbjct: 11 NSITNSSNGRFSTQPPS-KLLAIPDSNSRSLSNPLYHLLPQTQNPNNIVNIVYSSLKQHN 69
Query: 74 SHLTLLQN---DLKPLLPHLGAHEISRVLLRCQSDSVSALTFFNWVKNDLEIKPTSSNYC 130
++ + L D+K LLPHLG EISRVLLRCQSDS+SALTFF+WVKNDL ++P+ NYC
Sbjct: 70 NNNSHLNLLQNDVKHLLPHLGTDEISRVLLRCQSDSISALTFFSWVKNDLGLQPSIQNYC 129
Query: 131 LIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNW----------AY 180
+VHILAW+ +F AMK L EL++LVKDC + DVFQ L+ C +DCNW AY
Sbjct: 130 FLVHILAWSKEFKEAMKFLTELIKLVKDCSFNEDVFQTLLFCCQDCNWDPVIFDMLVKAY 189
Query: 181 VKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNT 240
V+ G+I+E F TFRK ++VG PS++SCN LLNGLLKLN IDQCWQVY+EM R+GI PN+
Sbjct: 190 VREGMIKEGFTTFRKIVEVGCVPSVISCNCLLNGLLKLNRIDQCWQVYKEMARVGIHPNS 249
Query: 241 HTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRI 300
+TFNILTHVFC++GDVDKVN FLE++EEEGF+PD+VTYNTLIS YC+KGRL+DAFYLYRI
Sbjct: 250 YTFNILTHVFCQDGDVDKVNDFLERMEEEGFEPDIVTYNTLISCYCRKGRLDDAFYLYRI 309
Query: 301 MYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGK 360
MYRRNVLPDLV+YT LMNGLCKEGKVREAHQLFHRM+HRGL+PDIVS+NTLI YCKEGK
Sbjct: 310 MYRRNVLPDLVSYTALMNGLCKEGKVREAHQLFHRMIHRGLNPDIVSFNTLICGYCKEGK 369
Query: 361 MQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDY 420
M+ES+SLL+EM+G+GI PD TCQ++++GY KE R++SALNLVVEL+RFGV IS DIYDY
Sbjct: 370 MRESRSLLHEMIGSGICPDKVTCQVLIEGYRKEARIVSALNLVVELERFGVPISTDIYDY 429
Query: 421 LIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRN 480
L+V++C++ RPFAA SLL+RI Q GYVP +EIYN+L+ESLCK DS+ADALL+K EM RN
Sbjct: 430 LMVSICEEGRPFAAKSLLQRISQRGYVPGVEIYNKLIESLCKSDSIADALLVKSEMGHRN 489
Query: 481 IKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAE 540
IKPS TY+ALICC C RS EA SLM+EML+SGMLPD ICR L++ YC E+D+ KAE
Sbjct: 490 IKPSAITYKALICCLCRTSRSMEAESLMEEMLQSGMLPDPDICRALMHVYCKERDIGKAE 549
Query: 541 ALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMIHSL 600
LL FAK+FQI+D+ESYN + + ED D ++LMELQ R L++GFAPN T + MIH L
Sbjct: 550 TLLQTFAKEFQIFDSESYNTLVKTYCEDADATRLMELQDRMLKVGFAPNIQTFRQMIHGL 609
Query: 601 WKGM 604
WK M
Sbjct: 610 WKAM 613
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224141281|ref|XP_002324003.1| predicted protein [Populus trichocarpa] gi|222867005|gb|EEF04136.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 817 bits (2111), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/588 (66%), Positives = 483/588 (82%), Gaps = 13/588 (2%)
Query: 28 SSSYSLQIIQDSEHKSLSNPLYNFLPETQNPNKIVDLICSSLKKGDSHLTLLQND-LKPL 86
SSS SLQ IQ+S SLSNPLY+FLPE QNPN V+LI SSLK+ ++ LTLLQND +K L
Sbjct: 31 SSSSSLQTIQNSNSISLSNPLYSFLPENQNPNNFVNLIYSSLKRDNTQLTLLQNDDIKGL 90
Query: 87 LPHLGAHEISRVLLRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAM 146
+ HLGA+EISRVLLRCQSDSVSALTFFNWVKNDL +KP++ NYCLI+H+LAW+ +F AM
Sbjct: 91 IHHLGANEISRVLLRCQSDSVSALTFFNWVKNDLGLKPSTLNYCLILHVLAWSKEFEQAM 150
Query: 147 KMLCELVELVKDCPHSVDVFQDLISCTEDCNW----------AYVKVGLIRESFKTFRKT 196
K L EL+ LVKD DVFQ L C +DCNW AYVK G+I+E F+TF +
Sbjct: 151 KFLTELILLVKDTDE--DVFQCLFLCCQDCNWDPIIFDLLLKAYVKAGMIKEGFRTFMQI 208
Query: 197 LDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDV 256
L+VG+ PS+++CN+LLNGLLK N I CW VY EMGR+G+ PN++TFNILTH+FCK+GD+
Sbjct: 209 LEVGYVPSVIACNYLLNGLLKSNHIHLCWHVYGEMGRVGVIPNSYTFNILTHLFCKDGDI 268
Query: 257 DKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTL 316
DK+N FLEK+EEEGF+PD+VTYNTLI+ YC +GRL+DAFYLYRIMYRR VLPDLV+YT L
Sbjct: 269 DKMNDFLEKMEEEGFEPDIVTYNTLINGYCGRGRLSDAFYLYRIMYRRCVLPDLVSYTAL 328
Query: 317 MNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGI 376
MNGLCKEG+VREAHQL HRMVHRGL+PD+VSYNTLI YCKEGKM ESKSLLYEM+GNGI
Sbjct: 329 MNGLCKEGRVREAHQLLHRMVHRGLNPDVVSYNTLICGYCKEGKMLESKSLLYEMIGNGI 388
Query: 377 YPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATS 436
+PD+FTC++++QGY KEG L+SALNLVVEL++FGVSIS DIYDYL+ +LC+++RPFAA +
Sbjct: 389 FPDSFTCRVLIQGYRKEGWLISALNLVVELEKFGVSISPDIYDYLVASLCEEDRPFAAKT 448
Query: 437 LLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFC 496
LLER+ Q GY+P +EIYN+L+ESLCK D VADAL LK E+V NI P+L TY+ALI C C
Sbjct: 449 LLERMSQRGYIPHVEIYNKLIESLCKGDCVADALSLKAEIVVGNINPNLLTYKALIRCLC 508
Query: 497 GIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTE 556
+GRS EA LM+EML G+ PD +ICR +I+GYC EKD KAE+LL FAK+FQI+D+E
Sbjct: 509 RMGRSIEAEKLMEEMLHFGLQPDPEICRAMIHGYCREKDAGKAESLLVLFAKEFQIFDSE 568
Query: 557 SYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMIHSLWKGM 604
SY+ + + EDGD++K MELQ+R L++GFAPN+LTCKYMI L K +
Sbjct: 569 SYSTLVRIVCEDGDVAKFMELQERMLKVGFAPNSLTCKYMIDGLRKNV 616
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147838532|emb|CAN65388.1| hypothetical protein VITISV_038361 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 811 bits (2094), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/581 (65%), Positives = 473/581 (81%), Gaps = 10/581 (1%)
Query: 33 LQIIQDSEHKSLSNPLYNFLPETQNPNKIVDLICSSLKKGDSHLTLLQNDLKPLLPHLGA 92
LQ + S+ S+SN LY+ LP+TQNPN IV+LICS+LK+ +S+L LL ++ LLPHLGA
Sbjct: 86 LQTLNQSQTNSISNSLYHLLPQTQNPNNIVNLICSNLKQHNSNLALLHTEVNALLPHLGA 145
Query: 93 HEISRVLLRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCEL 152
EISRVLLRCQSDS +AL+FFNWVKNDL ++P++ NYC+IVH LAW+ FS A+K LCEL
Sbjct: 146 QEISRVLLRCQSDSFTALSFFNWVKNDLGLRPSTQNYCIIVHTLAWSRNFSQAIKFLCEL 205
Query: 153 VELVKDCPHSVDVFQDLISCTEDCNW----------AYVKVGLIRESFKTFRKTLDVGFQ 202
VELVKD DVF++LI CTEDCNW AY+++G +RE ++FR+ L VGF
Sbjct: 206 VELVKDDLPGEDVFKNLILCTEDCNWDPVVFDMLVKAYLRMGRVREGLRSFRRMLRVGFV 265
Query: 203 PSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGF 262
P++++ N+LLNGLLKLN D+CW+VYEEM R GI PN +TFNILTHV CK+GD KVN F
Sbjct: 266 PTVITSNYLLNGLLKLNYTDRCWEVYEEMERFGIAPNLYTFNILTHVLCKDGDTGKVNKF 325
Query: 263 LEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCK 322
LEK+EEEGFDPD+VTYNTLI+SYC+KGRL+DAFYLY+IMYRR V+PDLV+YT LMNGLCK
Sbjct: 326 LEKMEEEGFDPDIVTYNTLINSYCRKGRLDDAFYLYKIMYRRGVVPDLVSYTALMNGLCK 385
Query: 323 EGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFT 382
EG+VREAHQLFHRMVHRGLSPDIV+YNTLI YCKEGKMQES+SLL++M+ NGI PD+FT
Sbjct: 386 EGRVREAHQLFHRMVHRGLSPDIVTYNTLIHGYCKEGKMQESRSLLHDMIWNGISPDSFT 445
Query: 383 CQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIG 442
C ++V+GYGKEG+ LSALNLVVELQRFGVSIS+DIY YLIVALC++NRPFAA +LLER+
Sbjct: 446 CWVLVEGYGKEGKFLSALNLVVELQRFGVSISQDIYSYLIVALCRENRPFAAKNLLERMS 505
Query: 443 QDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSG 502
QDG+ LEIYNEL++S C+CD +A+ALLLK EMVD+ IKP+L+TYRA+J C + RS
Sbjct: 506 QDGHKXELEIYNELIKSFCQCDCIAEALLLKMEMVDKEIKPNLATYRAVJGCLSRLSRSM 565
Query: 503 EAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVF 562
E SL+ EM+ SG LPD +ICR L GYC E D++KAE+LL F AK+FQI+DTES+NA+
Sbjct: 566 EGESLVGEMVASGXLPDLEICRALFYGYCRENDIDKAESLLSFXAKEFQIHDTESFNALI 625
Query: 563 NMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMIHSLWKG 603
+ + GD+++ +E+Q L++G PN LTCKY+I LWK
Sbjct: 626 RITSAKGDIARSLEIQDMMLKMGLLPNPLTCKYVIDGLWKA 666
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297734265|emb|CBI15512.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 808 bits (2088), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/571 (65%), Positives = 470/571 (82%), Gaps = 10/571 (1%)
Query: 33 LQIIQDSEHKSLSNPLYNFLPETQNPNKIVDLICSSLKKGDSHLTLLQNDLKPLLPHLGA 92
LQ + S+ S+SN LY+ LP+TQNPN IV+LICS+LK+ +S+L LL ++ LLPHLGA
Sbjct: 41 LQTLNQSQTNSISNSLYHLLPQTQNPNNIVNLICSNLKQHNSNLALLHTEVNALLPHLGA 100
Query: 93 HEISRVLLRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCEL 152
EISRVLLRCQSDS +AL+FFNWVKNDL ++P++ NYC++VH LAW+ FS AMK LCEL
Sbjct: 101 QEISRVLLRCQSDSFTALSFFNWVKNDLGLRPSTQNYCIVVHTLAWSRNFSQAMKFLCEL 160
Query: 153 VELVKDCPHSVDVFQDLISCTEDCNW----------AYVKVGLIRESFKTFRKTLDVGFQ 202
VELVKD S DVF++LI CTEDCNW AY+++G +RE ++FR+ L VGF
Sbjct: 161 VELVKDDLPSEDVFKNLILCTEDCNWDPVVFDMLVKAYLRMGRVREGLRSFRRMLRVGFV 220
Query: 203 PSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGF 262
P++++ N+LLNGLLKLN D+CW+VYEEM R GI PN +TFNILTHV CK+GD KVN F
Sbjct: 221 PTVITSNYLLNGLLKLNYTDRCWEVYEEMERFGIAPNLYTFNILTHVLCKDGDTGKVNKF 280
Query: 263 LEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCK 322
LEK+EEEGFDPD+VTYNTLI+SYC+KGRL+DAFYLY+IMYRR V+PDLV+YT LMNGLCK
Sbjct: 281 LEKMEEEGFDPDIVTYNTLINSYCRKGRLDDAFYLYKIMYRRGVVPDLVSYTALMNGLCK 340
Query: 323 EGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFT 382
EG+VREAHQLFHRMVHRGLSPDIV+YNTLI YCKEGKMQES+SLL++M+ NGI PD+FT
Sbjct: 341 EGRVREAHQLFHRMVHRGLSPDIVTYNTLIHGYCKEGKMQESRSLLHDMIWNGISPDSFT 400
Query: 383 CQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIG 442
C ++V+GYGKEG+ LSALNLVVELQRFGVSIS+DIY YLIVALC++NRPFAA +LLER+
Sbjct: 401 CWVLVEGYGKEGKFLSALNLVVELQRFGVSISQDIYSYLIVALCRENRPFAAKNLLERMS 460
Query: 443 QDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSG 502
+DG+ P LEIYNEL++S C+CD +A+ALLLK EMVD+ IKP+L+TYRA+I C + RS
Sbjct: 461 KDGHKPELEIYNELIKSFCQCDCIAEALLLKMEMVDKEIKPNLATYRAVIGCLSRLSRSM 520
Query: 503 EAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVF 562
E SL+ EM+ SGMLPD +ICR L GYC E D++KAE+LL FFAK+FQI+DTES+NA+
Sbjct: 521 EGESLVGEMVASGMLPDLEICRALFYGYCRENDIDKAESLLSFFAKEFQIHDTESFNALI 580
Query: 563 NMFAEDGDLSKLMELQKRFLRLGFAPNNLTC 593
+ + GD+++ +E+Q L++G PN LTC
Sbjct: 581 RITSAKGDIARSLEIQDMMLKMGLLPNPLTC 611
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449450197|ref|XP_004142850.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40400-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 750 bits (1937), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/580 (58%), Positives = 461/580 (79%), Gaps = 10/580 (1%)
Query: 36 IQDSEHKSLSNPLYNFLPETQNPNKIVDLICSSLKKGDSHLTLLQNDLKPLLPHLGAHEI 95
I +SE K + NPLY+FLP+ QNP IV+L+ S LK + L LLQ+ +K L+PHLG +I
Sbjct: 42 IPESEAKLIVNPLYHFLPQNQNPFNIVELVSSHLKTNNPRLALLQSHIKELIPHLGHRQI 101
Query: 96 SRVLLRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVEL 155
S++LLRCQS+ VSAL FFNWVK DL+I+ +S NYCLI+HILAW+ +F AMK L EL+EL
Sbjct: 102 SKILLRCQSNFVSALAFFNWVKYDLDIRLSSHNYCLIIHILAWSRQFPLAMKFLSELIEL 161
Query: 156 VKDCPHSVDVFQDLISCTEDCNW----------AYVKVGLIRESFKTFRKTLDVGFQPSI 205
KD S DVFQ+L+ CTE CNW AYVK+ LI ES+ +F+K + +GF P++
Sbjct: 162 SKDVSSSEDVFQNLVLCTEHCNWNPVIFEMLIKAYVKLDLIHESYWSFKKMVKLGFVPNV 221
Query: 206 VSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEK 265
++CN +LNGL K+ QCW++YEEMGRIG+ N +TFNILT+V C++GDV+K+NGFLEK
Sbjct: 222 IACNCILNGLAKMKSDAQCWELYEEMGRIGVHSNAYTFNILTYVLCRDGDVNKINGFLEK 281
Query: 266 IEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGK 325
+EEEGFDPD+VTYNTLI SY ++GRL DAFYLY+IMYRR V+PDLV+YT+LM GLC+ G+
Sbjct: 282 MEEEGFDPDVVTYNTLIDSYVRRGRLEDAFYLYKIMYRRGVMPDLVSYTSLMRGLCRLGR 341
Query: 326 VREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQI 385
VREAHQLFHRM+ RG+ PD+V YNTLI AYCK+G +QE++SLL+EM+G GI+PD+FTC+I
Sbjct: 342 VREAHQLFHRMIDRGMDPDVVLYNTLIGAYCKDGMLQEARSLLHEMIGIGIHPDSFTCRI 401
Query: 386 IVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDG 445
+V+GYG+EGRL+SALNLVVE+Q+ GV+++ DIY YLI++LC+++RPFAA SLLERI +D
Sbjct: 402 LVEGYGREGRLISALNLVVEIQKLGVTVAHDIYKYLIISLCREDRPFAAKSLLERILEDS 461
Query: 446 YVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAV 505
+ P +IYN+L+ES C+ ++V++ALLLK EM++RN KP+ TY++LI C C I RS +
Sbjct: 462 FQPDSDIYNKLIESFCRSNNVSEALLLKLEMINRNYKPTTDTYKSLIHCMCEINRSVDGE 521
Query: 506 SLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMF 565
LM EM+ES ++PD +ICR L+NGYC E + +KAE+LL FAK FQ +D+ES+N++ ++
Sbjct: 522 GLMVEMVESEVIPDHEICRALVNGYCKEGNADKAESLLVSFAKDFQFFDSESFNSLVKVY 581
Query: 566 AEDGDLSKLMELQKRFLRLGFAPNNLTCKYMIHSLWKGME 605
+ G+ +KLMELQ R L+ GF PN+LTC+Y+IH +WK M
Sbjct: 582 RDVGNETKLMELQDRMLKAGFLPNSLTCRYIIHGIWKSMR 621
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449483905|ref|XP_004156728.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40400-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 749 bits (1933), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/579 (58%), Positives = 461/579 (79%), Gaps = 10/579 (1%)
Query: 36 IQDSEHKSLSNPLYNFLPETQNPNKIVDLICSSLKKGDSHLTLLQNDLKPLLPHLGAHEI 95
I +SE K + NPLY+FLP+ QNP IV+L+ S LK + L LLQ+ +K L+PHLG +I
Sbjct: 46 IPESEAKLIVNPLYHFLPQNQNPFNIVELVSSHLKTNNPRLALLQSHIKELIPHLGHRQI 105
Query: 96 SRVLLRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVEL 155
S++LLRCQS+ VSAL FFNWVK DL+I+ +S NYCLI+HILAW+ +F AMK L EL+EL
Sbjct: 106 SKILLRCQSNFVSALAFFNWVKYDLDIRLSSHNYCLIIHILAWSRQFPLAMKFLSELIEL 165
Query: 156 VKDCPHSVDVFQDLISCTEDCNW----------AYVKVGLIRESFKTFRKTLDVGFQPSI 205
KD S DVFQ+L+ CTE CNW AYVK+ LI ES+ +F+K + +GF P++
Sbjct: 166 SKDVSSSEDVFQNLVLCTEHCNWNPVIFEMLIKAYVKLDLIHESYWSFKKMVKLGFVPNV 225
Query: 206 VSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEK 265
++CN +LNGL K+ QCW++YEEMGRIG+ N +TFNILT+V C++GDV+K+NGFLEK
Sbjct: 226 IACNCILNGLAKMKSDAQCWELYEEMGRIGVHSNAYTFNILTYVLCRDGDVNKINGFLEK 285
Query: 266 IEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGK 325
+EEEGFDPD+VTYNTLI SY ++GRL DAFYLY+IMYRR V+PDLV+YT+LM GLC+ G+
Sbjct: 286 MEEEGFDPDVVTYNTLIDSYVRRGRLEDAFYLYKIMYRRGVMPDLVSYTSLMRGLCRLGR 345
Query: 326 VREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQI 385
VREAHQLFHRM+ RG+ PD+V YNTLI AYCK+G +QE++SLL+EM+G GI+PD+FTC+I
Sbjct: 346 VREAHQLFHRMIDRGMDPDVVLYNTLIGAYCKDGMLQEARSLLHEMIGIGIHPDSFTCRI 405
Query: 386 IVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDG 445
+V+GYG+EGRL+SALNLVVE+Q+ GV+++ DIY YLI++LC+++RPFAA SLLERI +D
Sbjct: 406 LVEGYGREGRLISALNLVVEIQKLGVTVAHDIYKYLIISLCREDRPFAAKSLLERILEDS 465
Query: 446 YVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAV 505
+ P +IYN+L+ES C+ ++V++ALLLK EM++RN KP+ TY++LI C C I RS +
Sbjct: 466 FQPDSDIYNKLIESFCRSNNVSEALLLKLEMINRNYKPTTDTYKSLIHCMCEINRSVDGE 525
Query: 506 SLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMF 565
LM EM+ES ++PD +ICR L+NGYC E + +KAE+LL FA+ FQ +D+ES+N++ ++
Sbjct: 526 GLMVEMVESEVIPDHEICRALVNGYCKEGNADKAESLLVSFAQDFQFFDSESFNSLVKVY 585
Query: 566 AEDGDLSKLMELQKRFLRLGFAPNNLTCKYMIHSLWKGM 604
+ G+ +KLMELQ R L+ GF PN+LTC+Y+IH +WK M
Sbjct: 586 RDVGNETKLMELQDRMLKAGFLPNSLTCRYIIHGIWKSM 624
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356513957|ref|XP_003525674.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40400-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 721 bits (1860), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/588 (58%), Positives = 450/588 (76%), Gaps = 17/588 (2%)
Query: 36 IQDSEHKSLSNPLYNFLPETQNPNKIVDLICSSLKKGDSHLTLLQN---DLKPLLPHLGA 92
+ DS KS +P YN LP TQNPN IV+LI S LK S+L+LL + D+K +LPH+G
Sbjct: 27 LHDSHSKSTLSPFYNLLPPTQNPNNIVNLISSILKHKSSNLSLLHSSNNDIKGILPHMGP 86
Query: 93 HEISRVLLRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCEL 152
HEISR+LLRCQSD S LTFFNWVKNDL I PT NYC+IVHILAW+ FS AM +L EL
Sbjct: 87 HEISRILLRCQSDHSSVLTFFNWVKNDLNITPTLHNYCVIVHILAWSRVFSHAMNLLSEL 146
Query: 153 VELVKD----CPHSVDVFQDLISCTEDCNW----------AYVKVGLIRESFKTFRKTLD 198
++LV+ P + ++++L+ CTEDCNW AYVK G++ + TFR+ ++
Sbjct: 147 IQLVEVEGVCVPPNDGIYENLVECTEDCNWNPAIFDMLIKAYVKAGMVEKGLATFRRNIE 206
Query: 199 VGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDK 258
F P++++CN LL+GL + N I QCW VYEEMGR+GI N +TFNI+THV CK+GD DK
Sbjct: 207 ACFIPNVIACNCLLSGLSRFNYIGQCWAVYEEMGRLGIHRNAYTFNIMTHVLCKDGDTDK 266
Query: 259 VNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMN 318
V FL+K+EEEGF+PDLVTYNTL++SYCKK RL DAFYLY+IMY R V+P+L+T+T LMN
Sbjct: 267 VTRFLDKMEEEGFEPDLVTYNTLVNSYCKKRRLEDAFYLYKIMYIRGVMPNLITHTVLMN 326
Query: 319 GLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYP 378
GLC+EGKV+EAHQLFH+MVHRG+ PD+VSYNTL+ YC+EGKMQ +SLL+EM+GNGI P
Sbjct: 327 GLCEEGKVKEAHQLFHQMVHRGIDPDVVSYNTLVSGYCREGKMQMCRSLLHEMIGNGICP 386
Query: 379 DTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLL 438
D+ TC++IV+G+ ++G+LLSALN VVEL+RF + I D+YDYLIVALC + RPFAA S L
Sbjct: 387 DSVTCRLIVEGFARDGKLLSALNTVVELKRFRIKIPEDLYDYLIVALCIEGRPFAARSFL 446
Query: 439 ERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGI 498
RI QDGY+P + YN+L+ESLCK ++V +AL+LK EMV R++ +L YRA+I C C +
Sbjct: 447 LRISQDGYMPKINTYNKLVESLCKFNNVEEALILKSEMVKRSMILNLVAYRAVISCLCRV 506
Query: 499 GRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESY 558
R+ EA L++EM+ SG+LPD +I R LINGYC E V+KA +LL FFA +FQ+YDTESY
Sbjct: 507 NRTLEAEGLLEEMVSSGILPDVEISRALINGYCEENKVDKAVSLLKFFANEFQVYDTESY 566
Query: 559 NAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMIHSLWKGMER 606
NAV +F + G++++L+ELQ + L++G+ N LTCKY+IH L K ME+
Sbjct: 567 NAVVKVFCDVGNVAELLELQDKLLKVGYVSNRLTCKYVIHGLQKAMEQ 614
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357495705|ref|XP_003618141.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355493156|gb|AES74359.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/621 (56%), Positives = 458/621 (73%), Gaps = 20/621 (3%)
Query: 5 SPKKQSFCINFISKLAFSSFSSASSSYSLQ-------IIQDSEHKSLSNPLYNFLPETQN 57
SP + F IS +S S + YS I+ DS+ +S+P YN LP T N
Sbjct: 10 SPAMKGFTFPRISNSIYSLSDSIFTKYSSFSSSSSSLILHDSDSNPISSPFYNLLPPTHN 69
Query: 58 PNKIVDLICSSLKKGDSHLTLLQNDLKPLLPHLGAHEISRVLLRCQSDSVSALTFFNWVK 117
PN IV+LI ++LK+ HL+ Q K +LPHLGAHEISRVL+R QSD+ SALTFFNWVK
Sbjct: 70 PNNIVNLISTALKQKSFHLSHFQTQFKTILPHLGAHEISRVLIRTQSDASSALTFFNWVK 129
Query: 118 NDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVK-DCPHSVDVFQDLISCTEDC 176
NDL + NYCLIVHIL WN F AMK+LCEL++L + DV++ LI CTEDC
Sbjct: 130 NDLRFTLSLQNYCLIVHILGWNQIFDQAMKLLCELIQLNNVNVVSYDDVYKCLIDCTEDC 189
Query: 177 NW----------AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQ 226
NW AYVK+G++ + +TF K ++ F P++V+CN LLNGL K+N I +CW+
Sbjct: 190 NWNPVIFDMLIKAYVKLGMVEKGLETFWKNVEGSFVPNVVACNCLLNGLSKINYIGECWE 249
Query: 227 VYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYC 286
VYEEMGR+GI N +TFNI+THV C+ GD DKVNGFLEK+EEEGF+PDLVTYN LI+ YC
Sbjct: 250 VYEEMGRLGIHRNGYTFNIMTHVLCREGDSDKVNGFLEKMEEEGFEPDLVTYNILINGYC 309
Query: 287 KKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIV 346
KK RL DAFYLY+IM R V+P+L++Y+ LMNGLCKEGK++EAHQLF++MV RG+ PD+V
Sbjct: 310 KKRRLEDAFYLYKIMGIRGVVPNLISYSALMNGLCKEGKIKEAHQLFNQMVQRGIDPDVV 369
Query: 347 SYNTLIFAYCKE-GKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVE 405
SYNTLI YCKE GKMQ +SLL+EM+G GI PD TC+I+ QGY +EG+LLSALN+V E
Sbjct: 370 SYNTLISGYCKEGGKMQMCRSLLHEMIGIGIRPDNVTCRIVFQGYTREGKLLSALNMVAE 429
Query: 406 LQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDG-YVPSLEIYNELMESLCKCD 464
LQRFG+ I ++YDYL+VALC++ RPFAA S L RI QDG YVP + Y +L ESLC +
Sbjct: 430 LQRFGIKIPENLYDYLLVALCKEGRPFAARSFLIRISQDGDYVPEMSTYIKLAESLCSFN 489
Query: 465 SVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICR 524
+V +AL+LK EM +++K +L+TY+A+I C C + R+ EA +L++EM+ G+LPD +I R
Sbjct: 490 NVEEALILKSEMAKKSMKLNLTTYKAIISCLCRVKRTSEAENLLEEMVSLGILPDLEIKR 549
Query: 525 VLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRL 584
LINGYC E DV+KA +LL FFAK+FQ+YDTESYNA+ +F E G++++LMELQ + +++
Sbjct: 550 ALINGYCEENDVDKAVSLLKFFAKEFQVYDTESYNAIVKVFCEVGNVAELMELQDKLVKI 609
Query: 585 GFAPNNLTCKYMIHSLWKGME 605
G+ PN+LTCKY+I L KGME
Sbjct: 610 GYVPNSLTCKYVIRGLQKGME 630
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297805650|ref|XP_002870709.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297316545|gb|EFH46968.1| binding protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 658 bits (1698), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/600 (56%), Positives = 442/600 (73%), Gaps = 21/600 (3%)
Query: 15 FISKLAFSSFSSASSSYSLQIIQDSEHKSLSNPLYNFLPETQNPNKIVDLICSSLKKGDS 74
+SKL F FSS+S I K + NPLYN LP+TQNPNKIVD+ICS+L D
Sbjct: 4 LVSKLRF--FSSSSIVPRCNNIP----KPILNPLYNLLPQTQNPNKIVDVICSTLNHRDH 57
Query: 75 HLTL--LQNDLKPLLPHLGAHEISRVLLRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLI 132
+ L L++++K L+PHLG EISRVLLR QSD+ ALTFF WVK DL +P NYCL+
Sbjct: 58 SVLLPNLRDEVKSLIPHLGYPEISRVLLRFQSDASRALTFFKWVKFDLGKRPNVGNYCLL 117
Query: 133 VHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNW----------AYVK 182
+HILA + KF AM+ LCEL+EL DVF L+S +++CNW Y+K
Sbjct: 118 LHILASSKKFPLAMQFLCELIELTSK-KEEEDVFSVLVSASDECNWDPVVFDMLVKGYLK 176
Query: 183 VGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHT 242
+GL+ + F TFRK +D GF+ S+V+CN LLNGLLKL+ ++ CWQVY M R+GI PNT+T
Sbjct: 177 LGLVEDGFSTFRKVIDSGFRVSVVTCNHLLNGLLKLDLMEDCWQVYNVMCRVGIHPNTYT 236
Query: 243 FNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMY 302
FNILT+VFC N + +V+ FLEK+EEEGF+PDLVTYNTL+SSYC++GRL +AFYLY+IMY
Sbjct: 237 FNILTNVFCNNSNYGEVDDFLEKMEEEGFEPDLVTYNTLVSSYCRRGRLKEAFYLYKIMY 296
Query: 303 RRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQ 362
RR V+PDLVTYT+L+ GLCK+G+VREAHQ FHRMV RG+ PD +SYNTLI+AYCKEG MQ
Sbjct: 297 RRRVVPDLVTYTSLIKGLCKDGRVREAHQTFHRMVDRGIKPDCMSYNTLIYAYCKEGMMQ 356
Query: 363 ESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLI 422
+SK LL+EM+GN + PD FTC++IV+G+ +EGRLL+A+N VVEL+R V I ++ D+LI
Sbjct: 357 QSKKLLHEMLGNSVVPDRFTCKVIVEGFVREGRLLAAVNFVVELRRLKVIIPIEVCDFLI 416
Query: 423 VALCQDNRPFAATSLLERIG-QDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNI 481
+LCQ+ +PFAA LLERI ++G+ E YN L+ESLC CD++ +AL+LK ++ ++N
Sbjct: 417 KSLCQEGKPFAAKHLLERISKEEGHEAKPETYNNLIESLCCCDAIEEALVLKGKLKNQNQ 476
Query: 482 KPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEA 541
+ TYRALI C C IGR+ EA SLM EML+S + PDS IC L+N YC E D +KAE+
Sbjct: 477 VLDVKTYRALIGCLCRIGRNREAESLMAEMLDSEVKPDSIICGALVNRYCKELDFDKAES 536
Query: 542 LLGFFAKKFQIYDTESYNAVFNMFAEDGD-LSKLMELQKRFLRLGFAPNNLTCKYMIHSL 600
LL FFA +F+I+DT SYN++ N E G K+++LQ+R RLGF PN+LTCKY+I L
Sbjct: 537 LLSFFAMEFRIFDTLSYNSLVNALCETGSGYDKVLDLQERMQRLGFVPNSLTCKYLIQVL 596
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|145358679|ref|NP_198856.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75171831|sp|Q9FND8.1|PP409_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g40400 gi|10178151|dbj|BAB11596.1| salt-inducible protein-like [Arabidopsis thaliana] gi|110742507|dbj|BAE99171.1| hypothetical protein [Arabidopsis thaliana] gi|332007160|gb|AED94543.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 650 bits (1678), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/601 (55%), Positives = 438/601 (72%), Gaps = 19/601 (3%)
Query: 14 NFISKLAFSSFSSASSSYSLQIIQDSEHKSLSNPLYNFLPETQNPNKIVDLICSSLKKGD 73
N +S L F FSS SSS + + K + NPLYN LP++QNP+KIVD+ICS+L D
Sbjct: 3 NLVSNLRF--FSSYSSSIVPRC--SNIPKPILNPLYNLLPQSQNPSKIVDVICSTLNHSD 58
Query: 74 SHLTL--LQNDLKPLLPHLGAHEISRVLLRCQSDSVSALTFFNWVKNDLEIKPTSSNYCL 131
+ L L++++K L+PHLG EISRVLLR QSD+ A+TFF WVK DL +P NYCL
Sbjct: 59 YSVLLPNLRDEVKSLIPHLGYPEISRVLLRFQSDASRAITFFKWVKFDLGKRPNVGNYCL 118
Query: 132 IVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNW----------AYV 181
++HIL + KF AM+ LCEL+EL VDVF+ L+S T++CNW Y+
Sbjct: 119 LLHILVSSKKFPLAMQFLCELIELTSK-KEEVDVFRVLVSATDECNWDPVVFDMLVKGYL 177
Query: 182 KVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTH 241
K+GL+ E F+ FR+ LD GF S+V+CN LLNGLLKL+ ++ CWQVY M R+GI PNT+
Sbjct: 178 KLGLVEEGFRVFREVLDSGFSVSVVTCNHLLNGLLKLDLMEDCWQVYSVMCRVGIHPNTY 237
Query: 242 TFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIM 301
TFNILT+VFC + + +V+ FLEK+EEEGF+PDLVTYNTL+SSYC++GRL +AFYLY+IM
Sbjct: 238 TFNILTNVFCNDSNFREVDDFLEKMEEEGFEPDLVTYNTLVSSYCRRGRLKEAFYLYKIM 297
Query: 302 YRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKM 361
YRR V+PDLVTYT+L+ GLCK+G+VREAHQ FHRMV RG+ PD +SYNTLI+AYCKEG M
Sbjct: 298 YRRRVVPDLVTYTSLIKGLCKDGRVREAHQTFHRMVDRGIKPDCMSYNTLIYAYCKEGMM 357
Query: 362 QESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYL 421
Q+SK LL+EM+GN + PD FTC++IV+G+ +EGRLLSA+N VVEL+R V I ++ D+L
Sbjct: 358 QQSKKLLHEMLGNSVVPDRFTCKVIVEGFVREGRLLSAVNFVVELRRLKVDIPFEVCDFL 417
Query: 422 IVALCQDNRPFAATSLLER-IGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRN 480
IV+LCQ+ +PFAA LL+R I ++G+ E YN L+ESL +CD++ +AL+LK ++ ++N
Sbjct: 418 IVSLCQEGKPFAAKHLLDRIIEEEGHEAKPETYNNLIESLSRCDAIEEALVLKGKLKNQN 477
Query: 481 IKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAE 540
TYRALI C C IGR+ EA SLM EM +S + PDS IC L+ GYC E D +KAE
Sbjct: 478 QVLDAKTYRALIGCLCRIGRNREAESLMAEMFDSEVKPDSFICGALVYGYCKELDFDKAE 537
Query: 541 ALLGFFAKKFQIYDTESYNAVFNMFAEDG-DLSKLMELQKRFLRLGFAPNNLTCKYMIHS 599
LL FA +F+I+D ESYN++ E G K +ELQ+R RLGF PN LTCKY+I
Sbjct: 538 RLLSLFAMEFRIFDPESYNSLVKAVCETGCGYKKALELQERMQRLGFVPNRLTCKYLIQV 597
Query: 600 L 600
L
Sbjct: 598 L 598
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 609 | ||||||
| TAIR|locus:2170538 | 610 | AT5G40400 "AT5G40400" [Arabido | 0.916 | 0.914 | 0.567 | 2.5e-175 | |
| TAIR|locus:2150024 | 729 | AT5G01110 [Arabidopsis thalian | 0.865 | 0.722 | 0.289 | 5.5e-61 | |
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.862 | 0.702 | 0.288 | 2.5e-58 | |
| TAIR|locus:2024301 | 606 | AT1G09820 "AT1G09820" [Arabido | 0.821 | 0.825 | 0.272 | 3e-53 | |
| TAIR|locus:2024367 | 607 | AT1G09680 "AT1G09680" [Arabido | 0.844 | 0.846 | 0.281 | 1e-52 | |
| TAIR|locus:2053552 | 627 | AT2G15630 "AT2G15630" [Arabido | 0.898 | 0.872 | 0.271 | 1.7e-52 | |
| TAIR|locus:2024296 | 598 | AT1G09900 "AT1G09900" [Arabido | 0.692 | 0.705 | 0.287 | 2.4e-51 | |
| TAIR|locus:2139732 | 566 | AT4G11690 [Arabidopsis thalian | 0.697 | 0.750 | 0.304 | 2.8e-50 | |
| TAIR|locus:1009023134 | 644 | AT1G12775 [Arabidopsis thalian | 0.735 | 0.695 | 0.281 | 3.6e-50 | |
| TAIR|locus:2166610 | 596 | AT5G38730 "AT5G38730" [Arabido | 0.844 | 0.862 | 0.266 | 2.5e-49 |
| TAIR|locus:2170538 AT5G40400 "AT5G40400" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1703 (604.5 bits), Expect = 2.5e-175, P = 2.5e-175
Identities = 325/573 (56%), Positives = 425/573 (74%)
Query: 42 KSLSNPLYNFLPETQNPNKIVDLICSSLKKGDSHLTL--LQNDLKPLLPHLGAHEISRVL 99
K + NPLYN LP++QNP+KIVD+ICS+L D + L L++++K L+PHLG EISRVL
Sbjct: 27 KPILNPLYNLLPQSQNPSKIVDVICSTLNHSDYSVLLPNLRDEVKSLIPHLGYPEISRVL 86
Query: 100 LRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDC 159
LR QSD+ A+TFF WVK DL +P NYCL++HIL + KF AM+ LCEL+EL
Sbjct: 87 LRFQSDASRAITFFKWVKFDLGKRPNVGNYCLLLHILVSSKKFPLAMQFLCELIELTSK- 145
Query: 160 PHSVDVFQDLISCTEDCNW----------AYVKVGLIRESFKTFRKTLDVGFQPSIVSCN 209
VDVF+ L+S T++CNW Y+K+GL+ E F+ FR+ LD GF S+V+CN
Sbjct: 146 KEEVDVFRVLVSATDECNWDPVVFDMLVKGYLKLGLVEEGFRVFREVLDSGFSVSVVTCN 205
Query: 210 FLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEE 269
LLNGLLKL+ ++ CWQVY M R+GI PNT+TFNILT+VFC + + +V+ FLEK+EEE
Sbjct: 206 HLLNGLLKLDLMEDCWQVYSVMCRVGIHPNTYTFNILTNVFCNDSNFREVDDFLEKMEEE 265
Query: 270 GFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREA 329
GF+PDLVTYNTL+SSYC++GRL +AFYLY+IMYRR V+PDLVTYT+L+ GLCK+G+VREA
Sbjct: 266 GFEPDLVTYNTLVSSYCRRGRLKEAFYLYKIMYRRRVVPDLVTYTSLIKGLCKDGRVREA 325
Query: 330 HQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQG 389
HQ FHRMV RG+ PD +SYNTLI+AYCKEG MQ+SK LL+EM+GN + PD FTC++IV+G
Sbjct: 326 HQTFHRMVDRGIKPDCMSYNTLIYAYCKEGMMQQSKKLLHEMLGNSVVPDRFTCKVIVEG 385
Query: 390 YGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERI-GQDGYVP 448
+ +EGRLLSA+N VVEL+R V I ++ D+LIV+LCQ+ +PFAA LL+RI ++G+
Sbjct: 386 FVREGRLLSAVNFVVELRRLKVDIPFEVCDFLIVSLCQEGKPFAAKHLLDRIIEEEGHEA 445
Query: 449 SLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLM 508
E YN L+ESL +CD++ +AL+LK ++ ++N TYRALI C C IGR+ EA SLM
Sbjct: 446 KPETYNNLIESLSRCDAIEEALVLKGKLKNQNQVLDAKTYRALIGCLCRIGRNREAESLM 505
Query: 509 DEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAED 568
EM +S + PDS IC L+ GYC E D +KAE LL FA +F+I+D ESYN++ E
Sbjct: 506 AEMFDSEVKPDSFICGALVYGYCKELDFDKAERLLSLFAMEFRIFDPESYNSLVKAVCET 565
Query: 569 G-DLSKLMELQKRFLRLGFAPNNLTCKYMIHSL 600
G K +ELQ+R RLGF PN LTCKY+I L
Sbjct: 566 GCGYKKALELQERMQRLGFVPNRLTCKYLIQVL 598
|
|
| TAIR|locus:2150024 AT5G01110 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
Identities = 159/549 (28%), Positives = 265/549 (48%)
Query: 61 IVDLICSSLKKGDSHLTLLQNDLKPLLPHLGAHEISRVLLRCQSDSVSALTFFNWVKNDL 120
+V+ IC SLK+G++++ +N L L P L E VL RC++D F + +
Sbjct: 54 LVEKICFSLKQGNNNV---RNHLIRLNP-LAVVE---VLYRCRNDLTLGQRFVDQLGFHF 106
Query: 121 -EIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNW- 178
K TS + ++HIL + + S A L ++ + +++ L S +C
Sbjct: 107 PNFKHTSLSLSAMIHILVRSGRLSDAQSCLLRMIR--RSGVSRLEIVNSLDSTFSNCGSN 164
Query: 179 ---------AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYE 229
YV+ +RE+ + F GF SI +CN L+ L+++ ++ W VY+
Sbjct: 165 DSVFDLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQ 224
Query: 230 EMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKG 289
E+ R G+ N +T NI+ + CK+G ++KV FL +++E+G PD+VTYNTLIS+Y KG
Sbjct: 225 EISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKG 284
Query: 290 RLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYN 349
+ +AF L M + P + TY T++NGLCK GK A ++F M+ GLSPD +Y
Sbjct: 285 LMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYR 344
Query: 350 TLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRF 409
+L+ CK+G + E++ + +M + PD ++ + + G L AL ++
Sbjct: 345 SLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEA 404
Query: 410 GVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADA 469
G+ IY LI C+ A +L + Q G + YN ++ LCK + +A
Sbjct: 405 GLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEA 464
Query: 470 LLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLING 529
L +EM +R + P T LI C +G A+ L +M E + D L++G
Sbjct: 465 DKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDG 524
Query: 530 YCMEKDVNKAEALLGFFAKKFQIYDTE-SYNAVFNMFAEDGDLSKLMELQKRFLRLGFAP 588
+ D++ A+ + K +I T SY+ + N G L++ + + P
Sbjct: 525 FGKVGDIDTAKEIWADMVSK-EILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKP 583
Query: 589 NNLTCKYMI 597
+ C MI
Sbjct: 584 TVMICNSMI 592
|
|
| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
Identities = 158/547 (28%), Positives = 266/547 (48%)
Query: 73 DSHLTLLQNDLKPL-LPHLGAH----EISRVLLRCQSDSVSALTFFNWVKNDLEIKPTSS 127
D LT L+ P L HL A+ S +LL+ Q+D L F NW N + T
Sbjct: 26 DKALTFLKRH--PYQLHHLSANFTPEAASNLLLKSQNDQALILKFLNWA-NPHQFF-TLR 81
Query: 128 NYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIR 187
C+ +HIL + A + ++ D ++ VF+ L + C L+
Sbjct: 82 CKCITLHILTKFKLYKTAQILAEDVAAKTLDDEYASLVFKSLQETYDLCYSTSSVFDLVV 141
Query: 188 ESFKTFR---KTLDV-------GFQPSIVSCNFLLNGLL--KLNCIDQCWQVYEEMGRIG 235
+S+ K L + GF P ++S N +L+ + K N I V++EM
Sbjct: 142 KSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRN-ISFAENVFKEMLESQ 200
Query: 236 ICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAF 295
+ PN T+NIL FC G++D +K+E +G P++VTYNTLI YCK +++D F
Sbjct: 201 VSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGF 260
Query: 296 YLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAY 355
L R M + + P+L++Y ++NGLC+EG+++E + M RG S D V+YNTLI Y
Sbjct: 261 KLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGY 320
Query: 356 CKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISR 415
CKEG ++ + EM+ +G+ P T ++ K G + A+ + +++ G+ +
Sbjct: 321 CKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNE 380
Query: 416 DIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDE 475
Y L+ Q A +L + +G+ PS+ YN L+ C + DA+ + ++
Sbjct: 381 RTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLED 440
Query: 476 MVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKD 535
M ++ + P + +Y ++ FC EA+ + EM+E G+ PD+ LI G+C ++
Sbjct: 441 MKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRR 500
Query: 536 VNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKY 595
+A L + D +Y A+ N + +GDL K ++L + G P+ +T
Sbjct: 501 TKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSV 560
Query: 596 MIHSLWK 602
+I+ L K
Sbjct: 561 LINGLNK 567
|
|
| TAIR|locus:2024301 AT1G09820 "AT1G09820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
Identities = 141/517 (27%), Positives = 254/517 (49%)
Query: 90 LGAHEISRVLLRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKML 149
+ +E+ R L+ + D L +++W+ + +I + ++H LA ++S L
Sbjct: 65 INPNELFRQLISSELDPDLCLRYYSWLVKNSDISVSLELTFKLLHSLANAKRYSKIRSFL 124
Query: 150 CELVELVKDCPHSV-DVFQDLISCTEDC-N--------WAYVKVGLIRESFKTFRKTLDV 199
V D H V +F + C C N AY F+ F+++
Sbjct: 125 DGFVRNGSD--HQVHSIFHAISMCDNVCVNSIIADMLVLAYANNSRFELGFEAFKRSGYY 182
Query: 200 GFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKV 259
G++ S +SC L+ LLK N VY+EM R I PN TFN++ + CK G ++K
Sbjct: 183 GYKLSALSCKPLMIALLKENRSADVEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKA 242
Query: 260 NGFLEKIEEEGFDPDLVTYNTLISSYCK---KGRLNDAFYLYRIMYRRNVLPDLVTYTTL 316
+E ++ G P++V+YNTLI YCK G++ A + + M +V P+L T+ L
Sbjct: 243 RDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNIL 302
Query: 317 MNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGI 376
++G K+ + + ++F M+ + + P+++SYN+LI C GK+ E+ S+ +M+ G+
Sbjct: 303 IDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGV 362
Query: 377 YPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATS 436
P+ T ++ G+ K L AL++ ++ G + +Y+ LI A C+ + +
Sbjct: 363 QPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFA 422
Query: 437 LLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFC 496
L E + ++G VP + YN L+ LC+ ++ A L D++ + + P L T+ L+ +C
Sbjct: 423 LKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGL-PDLVTFHILMEGYC 481
Query: 497 GIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQI-YDT 555
G S +A L+ EM + G+ P +++ GYC E ++ A + K+ ++ +
Sbjct: 482 RKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNV 541
Query: 556 ESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLT 592
SYN + +++ G L L L G PN +T
Sbjct: 542 ASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRIT 578
|
|
| TAIR|locus:2024367 AT1G09680 "AT1G09680" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
Identities = 149/529 (28%), Positives = 241/529 (45%)
Query: 83 LKPLLPHLGAHEISRVLLR--CQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNN 140
++ +LP L H + ++ S FF ++ + + T Y ++ LA +
Sbjct: 73 IRKVLPSLSVHHVVDLINHNPLSLPQRSIFAFFKFISSQPGFRFTVETYFVLARFLAVHE 132
Query: 141 KFSFAMKMLCELVELVKDCPHSVDVFQDLISC--TEDCNW-------AYVKVGLIRESFK 191
F+ A ++ ELV K + VF L+ T C + Y +G I ++ +
Sbjct: 133 MFTEAQSLI-ELVVSRKGKNSASSVFISLVEMRVTPMCGFLVDALMITYTDLGFIPDAIQ 191
Query: 192 TFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFC 251
FR + F I C LL+ ++KLN W Y E+ G N + FNIL + FC
Sbjct: 192 CFRLSRKHRFDVPIRGCGNLLDRMMKLNPTGTIWGFYMEILDAGFPLNVYVFNILMNKFC 251
Query: 252 KNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLV 311
K G++ ++I + P +V++NTLI+ YCK G L++ F L M + PD+
Sbjct: 252 KEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVF 311
Query: 312 TYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEM 371
TY+ L+N LCKE K+ AH LF M RGL P+ V + TLI + + G++ K +M
Sbjct: 312 TYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKM 371
Query: 372 MGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRP 431
+ G+ PD +V G+ K G L++A N+V + R G+ + Y LI C+
Sbjct: 372 LSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDV 431
Query: 432 FAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRAL 491
A + + + Q+G ++ L+ +CK V DA EM+ IKP TY +
Sbjct: 432 ETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMM 491
Query: 492 ICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQ 551
+ FC G + L+ EM G +P VL+NG C + A+ LL
Sbjct: 492 MDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNIGV 551
Query: 552 IYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMIHSL 600
+ D +YN + + SK +QK +G + + K +++ L
Sbjct: 552 VPDDITYNTLLEGHHRHANSSKRY-IQKP--EIGIVADLASYKSIVNEL 597
|
|
| TAIR|locus:2053552 AT2G15630 "AT2G15630" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
Identities = 156/574 (27%), Positives = 264/574 (45%)
Query: 44 LSNPLYNFLPETQNPNKIVDLICSSLKKGDSHLTLLQNDLKPLLPHLGAHEISRVLLRCQ 103
LS+ PE+ P +++ S++ H+ +++ L P L +S LL
Sbjct: 29 LSSLAQTSTPESVLPPITSEILLESIRSSQWHI--VEHVADKLTPSL----VSTTLLSLV 82
Query: 104 SDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSV 163
A F N + DL + CL + +++ K S + L E+V +S+
Sbjct: 83 KTPNLAFNFVNHI--DL-YRLDFQTQCLAIAVIS---KLSSPKPVTQLLKEVVTSRKNSI 136
Query: 164 -DVFQDLISCTEDCNWAYV-----------KVGLIRESFKTFRKTLDVGFQPSIVSCNFL 211
++F +L+ + ++ ++ E+ + F + GF P +CN +
Sbjct: 137 RNLFDELVLAHDRLETKSTILFDLLVRCCCQLRMVDEAIECFYLMKEKGFYPKTETCNHI 196
Query: 212 LNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGF 271
L L +LN I+ W Y +M R+ I N +TFNI+ +V CK G + K GFL +E G
Sbjct: 197 LTLLSRLNRIENAWVFYADMYRMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMEVFGI 256
Query: 272 DPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQ 331
P +VTYNTL+ + +GR+ A + M + PD+ TY +++ +C EG+ A +
Sbjct: 257 KPTIVTYNTLVQGFSLRGRIEGARLIISEMKSKGFQPDMQTYNPILSWMCNEGR---ASE 313
Query: 332 LFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYG 391
+ M GL PD VSYN LI G ++ + + EM+ G+ P +T ++ G
Sbjct: 314 VLREMKEIGLVPDSVSYNILIRGCSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLF 373
Query: 392 KEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLE 451
E ++ +A L+ E++ G+ + Y+ LI CQ A +L + + DG P+
Sbjct: 374 MENKIEAAEILIREIREKGIVLDSVTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQF 433
Query: 452 IYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEM 511
Y L+ LC+ + +A L +++V + +KP L L+ C IG A SL+ EM
Sbjct: 434 TYTSLIYVLCRKNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEM 493
Query: 512 LESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDL 571
+ PD L+ G C E +A L+G ++ D SYN + + +++ GD
Sbjct: 494 DMMSINPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKGDT 553
Query: 572 SKLMELQKRFLRLGFAPNNLTCKYMIHSLWKGME 605
++ L LGF P LT ++ L K E
Sbjct: 554 KHAFMVRDEMLSLGFNPTLLTYNALLKGLSKNQE 587
|
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| TAIR|locus:2024296 AT1G09900 "AT1G09900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 533 (192.7 bits), Expect = 2.4e-51, P = 2.4e-51
Identities = 122/425 (28%), Positives = 208/425 (48%)
Query: 181 VKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNT 240
V+ G + E FK + G P I+ C L+ G +L + ++ E + G P+
Sbjct: 113 VRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDV 172
Query: 241 HTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRI 300
T+N++ +CK G++ N L ++ PD+VTYNT++ S C G+L A +
Sbjct: 173 ITYNVMISGYCKAGEI---NNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDR 229
Query: 301 MYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGK 360
M +R+ PD++TYT L+ C++ V A +L M RG +PD+V+YN L+ CKEG+
Sbjct: 230 MLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGR 289
Query: 361 MQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDY 420
+ E+ L +M +G P+ T II++ GR + A L+ ++ R G S S ++
Sbjct: 290 LDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNI 349
Query: 421 LIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRN 480
LI LC+ A +LE++ Q G P+ YN L+ CK + A+ + MV R
Sbjct: 350 LINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRG 409
Query: 481 IKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAE 540
P + TY ++ C G+ +AV +++++ G P +I+G KA
Sbjct: 410 CYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAI 469
Query: 541 ALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMIHSL 600
LL K DT +Y+++ + +G + + ++ F R+G PN +T ++ L
Sbjct: 470 KLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGL 529
Query: 601 WKGME 605
K +
Sbjct: 530 CKSRQ 534
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| TAIR|locus:2139732 AT4G11690 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
Identities = 136/447 (30%), Positives = 232/447 (51%)
Query: 103 QSDSVS-ALTFFN-WVKNDLEIKPTSSNYCL--IVHILAWNNKFSFAMKMLCELVELVKD 158
QS S++ ++++FN V N NY L +V ++N +SF + ++V
Sbjct: 106 QSQSLNLSISYFNEMVDNGFVPGSNCFNYLLTFVVGSSSFNQWWSFFNENKSKVV----- 160
Query: 159 CPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKL 218
+DV+ I C + G I +SF + + GF P++V L++G K
Sbjct: 161 ----LDVYSFGILIKGCC-----EAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKK 211
Query: 219 NCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGF--LEKIEEEGFDPDLV 276
I++ ++ EMG++G+ N T+ +L + KNG V K GF EK++E+G P+L
Sbjct: 212 GEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNG-VKK-QGFEMYEKMQEDGVFPNLY 269
Query: 277 TYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRM 336
TYN +++ CK GR DAF ++ M R V ++VTY TL+ GLC+E K+ EA+++ +M
Sbjct: 270 TYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQM 329
Query: 337 VHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRL 396
G++P++++YNTLI +C GK+ ++ SL ++ G+ P T I+V G+ ++G
Sbjct: 330 KSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDT 389
Query: 397 LSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNEL 456
A +V E++ G+ S+ Y LI + + A L + + G VP + Y+ L
Sbjct: 390 SGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVL 449
Query: 457 MESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGM 516
+ C + +A L MV++N +P+ Y +I +C G S A+ L+ EM E +
Sbjct: 450 IHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKEL 509
Query: 517 LPDSQICRVLINGYCMEKDVNKAEALL 543
P+ R +I C E+ +AE L+
Sbjct: 510 APNVASYRYMIEVLCKERKSKEAERLV 536
|
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| TAIR|locus:1009023134 AT1G12775 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
Identities = 130/461 (28%), Positives = 227/461 (49%)
Query: 141 KFSFAMKMLCELVELVKDCPHSVDVFQDLIS--CTEDCNWAYVKVGLIRESFKTFRKTLD 198
K S+A + ++++L + P +V +F L++ C E C + E+ + + ++
Sbjct: 138 KLSYAFSTMGKIMKLGYE-PDTV-IFNTLLNGLCLE-CR--------VSEALELVDRMVE 186
Query: 199 VGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDK 258
+G +P++++ N L+NGL + + + M G PN T+ + +V CK+G
Sbjct: 187 MGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTAL 246
Query: 259 VNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMN 318
L K+EE D V Y+ +I CK G L++AF L+ M + D++TY TL+
Sbjct: 247 AMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIG 306
Query: 319 GLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYP 378
G C G+ + +L M+ R +SP++V+++ LI ++ KEGK++E+ LL EMM GI P
Sbjct: 307 GFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAP 366
Query: 379 DTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLL 438
+T T ++ G+ KE RL A+ +V + G ++ LI C+ NR L
Sbjct: 367 NTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELF 426
Query: 439 ERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGI 498
+ G + + YN L++ C+ + A L EMV R ++P + +Y+ L+ C
Sbjct: 427 REMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDN 486
Query: 499 GRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESY 558
G +A+ + ++ +S M D I ++I+G C V+ A L K D +Y
Sbjct: 487 GELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAY 546
Query: 559 NAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMIHS 599
N + + LSK L ++ G AP+ LT +I +
Sbjct: 547 NIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRA 587
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| TAIR|locus:2166610 AT5G38730 "AT5G38730" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
Identities = 141/530 (26%), Positives = 252/530 (47%)
Query: 61 IVDLICSSLKKGD-SHLTLLQNDLKPLLPHLGAHEISRVLLRCQSDSVS-ALTFFNWVKN 118
I IC+++ KG+ ++ + D L + IS + L S + +FF W +
Sbjct: 13 IAQSICATVLKGNWKNILKHKVDSGLLKSAITTQVISELSLFSGYGGPSLSWSFFIWTDS 72
Query: 119 DLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLIS-CTED-- 175
K + + ++ IL + F A ++L +L + ++ S V + L+ +ED
Sbjct: 73 LPSSKHSLQSSWKMILILTKHKHFKTAHQLLDKLAQ--RELLSSPLVLRSLVGGVSEDPE 130
Query: 176 -----CNWA---YVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQV 227
+W Y K G+I +S F + G +P + +C LLN L+K D W++
Sbjct: 131 DVSHVFSWLMIYYAKAGMINDSIVVFEQIRSCGLKPHLQACTVLLNSLVKQRLTDTVWKI 190
Query: 228 YEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCK 287
+++M ++G+ N H +N+L H K+GD +K L ++EE+G PD+ TYNTLIS YCK
Sbjct: 191 FKKMVKLGVVANIHVYNVLVHACSKSGDPEKAEKLLSEMEEKGVFPDIFTYNTLISVYCK 250
Query: 288 KGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVS 347
K +A + M R V P++VTY + ++G +EG++REA +LF R + ++ + V+
Sbjct: 251 KSMHFEALSVQDRMERSGVAPNIVTYNSFIHGFSREGRMREATRLF-REIKDDVTANHVT 309
Query: 348 YNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQ 407
Y TLI YC+ + E+ L M G P T I++ ++GR+ A L+ E+
Sbjct: 310 YTTLIDGYCRMNDIDEALRLREVMESRGFSPGVVTYNSILRKLCEDGRIREANRLLTEMS 369
Query: 408 RFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVA 467
+ + LI A C+ +A + +++ + G + Y L+ CK +
Sbjct: 370 GKKIEPDNITCNTLINAYCKIEDMVSAVKVKKKMIESGLKLDMYSYKALIHGFCKVLELE 429
Query: 468 DALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLI 527
+A M+++ P +TY L+ F + E L++E + G+ D + R LI
Sbjct: 430 NAKEELFSMIEKGFSPGYATYSWLVDGFYNQNKQDEITKLLEEFEKRGLCADVALYRGLI 489
Query: 528 NGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMEL 577
C + V+ A+ L KK + D+ + + + G +++ L
Sbjct: 490 RRICKLEQVDYAKVLFESMEKKGLVGDSVIFTTMAYAYWRTGKVTEASAL 539
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FND8 | PP409_ARATH | No assigned EC number | 0.5574 | 0.9556 | 0.9540 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00017752001 | SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (643 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 609 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-21 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-20 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-19 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-19 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-16 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-12 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-10 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-10 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-10 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-10 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-10 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-08 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-08 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-07 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-07 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 7e-07 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 8e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-06 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-05 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 9e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 1e-04 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 98.0 bits (244), Expect = 4e-21
Identities = 87/343 (25%), Positives = 149/343 (43%), Gaps = 18/343 (5%)
Query: 221 IDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNT 280
+D ++V+ EM G+ N HTF L + G V K G + + PD V +N
Sbjct: 488 VDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNA 547
Query: 281 LISSYCKKGRLNDAFYLYRIMYRRN--VLPDLVTYTTLMNGLCKEGKV---REAHQLFHR 335
LIS+ + G ++ AF + M + PD +T LM G+V +E +Q+ H
Sbjct: 548 LISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE 607
Query: 336 MVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGR 395
+G +P++ Y + + ++G + S+ +M G+ PD +V G G
Sbjct: 608 YNIKG-TPEV--YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGD 664
Query: 396 LLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNE 455
L A ++ + ++ G+ + Y L+ A A L E I P++ N
Sbjct: 665 LDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNA 724
Query: 456 LMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEA-VSLM--DEML 512
L+ +LC+ + + AL + EM + P+ TY L R +A V L +
Sbjct: 725 LITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL---LVASERKDDADVGLDLLSQAK 781
Query: 513 ESGMLPDSQICRVLINGYCM---EKDVNKAEALLGFFAKKFQI 552
E G+ P+ +CR + G C+ EK E ++ F + + QI
Sbjct: 782 EDGIKPNLVMCRCIT-GLCLRRFEKACALGEPVVSFDSGRPQI 823
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Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 82.8 bits (206), Expect = 6e-20
Identities = 26/50 (52%), Positives = 38/50 (76%)
Query: 273 PDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCK 322
PD+VTYNTLI YCKKG++ +A L+ M +R + P++ TY+ L++GLCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 91.9 bits (228), Expect = 4e-19
Identities = 73/319 (22%), Positives = 130/319 (40%), Gaps = 37/319 (11%)
Query: 238 PNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYL 297
P TFN+L V + D+D L ++E G D Y TLIS+ K G+++ F +
Sbjct: 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV 494
Query: 298 YRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCK 357
+ M V ++ T+ L++G + G+V +A + M + + PD V +N LI A +
Sbjct: 495 FHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ 554
Query: 358 EGKMQESKSLLYEMMGNG--IYPDTFT--------CQ----------------------- 384
G + + +L EM I PD T
Sbjct: 555 SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTP 614
Query: 385 ----IIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLER 440
I V ++G AL++ ++++ GV + L+ A +L+
Sbjct: 615 EVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQD 674
Query: 441 IGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGR 500
+ G Y+ LM + + AL L +++ ++P++ST ALI C +
Sbjct: 675 ARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQ 734
Query: 501 SGEAVSLMDEMLESGMLPD 519
+A+ ++ EM G+ P+
Sbjct: 735 LPKALEVLSEMKRLGLCPN 753
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Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 80.1 bits (199), Expect = 7e-19
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 308 PDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCK 357
PD+VTY TL++G CK+GKV EA +LF+ M RG+ P++ +Y+ LI CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 82.6 bits (204), Expect = 2e-16
Identities = 54/225 (24%), Positives = 103/225 (45%), Gaps = 9/225 (4%)
Query: 180 YVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPN 239
Y K G I ++ R D + + V+ N +L G ++ +Y EM G+ +
Sbjct: 269 YSKCGDIEDA----RCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324
Query: 240 THTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYR 299
TF+I+ +F + ++ + GF D+V L+ Y K GR+ DA ++
Sbjct: 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFD 384
Query: 300 IMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEG 359
M R+N L+++ L+ G G+ +A ++F RM+ G++P+ V++ ++ A G
Sbjct: 385 RMPRKN----LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSG 440
Query: 360 KMQESKSLLYEMMGN-GIYPDTFTCQIIVQGYGKEGRLLSALNLV 403
++ + M N I P +++ G+EG L A ++
Sbjct: 441 LSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMI 485
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 73.8 bits (181), Expect = 1e-13
Identities = 76/304 (25%), Positives = 124/304 (40%), Gaps = 56/304 (18%)
Query: 254 GDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTY 313
V V +E GF+PD N ++ + K G L DA L+ M RN L ++
Sbjct: 140 RCVKAVYWH---VESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERN----LASW 192
Query: 314 TTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMG 373
T++ GL G REA LF M G + ++ ++ A G + + L ++
Sbjct: 193 GTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLK 252
Query: 374 NGIYPDTF-TCQII------------------------------VQGYGKEGRLLSALNL 402
G+ DTF +C +I + GY G AL L
Sbjct: 253 TGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCL 312
Query: 403 VVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQ--DGYVPS---LEIY--NE 455
E++ GVSI + + +I R F+ +LLE Q G + + L+I
Sbjct: 313 YYEMRDSGVSIDQFTFSIMI-------RIFSRLALLEHAKQAHAGLIRTGFPLDIVANTA 365
Query: 456 LMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESG 515
L++ K + DA + D M +N+ ++ ALI + GR +AV + + M+ G
Sbjct: 366 LVDLYSKWGRMEDARNVFDRMPRKNL----ISWNALIAGYGNHGRGTKAVEMFERMIAEG 421
Query: 516 MLPD 519
+ P+
Sbjct: 422 VAPN 425
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 62.4 bits (153), Expect = 1e-12
Identities = 17/50 (34%), Positives = 31/50 (62%)
Query: 203 PSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCK 252
P +V+ N L++G K +++ +++ EM + GI PN +T++IL CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 60.5 bits (148), Expect = 4e-12
Identities = 24/50 (48%), Positives = 34/50 (68%)
Query: 343 PDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGK 392
PD+V+YNTLI YCK+GK++E+ L EM GI P+ +T I++ G K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 59.7 bits (146), Expect = 8e-12
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 238 PNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCK 287
P+ T+N L +CK G V++ ++++ G P++ TY+ LI CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 1e-10
Identities = 49/232 (21%), Positives = 99/232 (42%), Gaps = 8/232 (3%)
Query: 180 YVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPN 239
V G RE+F FR+ + G + +L L Q++ + + G+ +
Sbjct: 199 LVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGD 258
Query: 240 THTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYR 299
T L ++ K GD++ + + E+ V +N++++ Y G +A LY
Sbjct: 259 TFVSCALIDMYSKCGDIEDARCVFDGMPEK----TTVAWNSMLAGYALHGYSEEALCLYY 314
Query: 300 IMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEG 359
M V D T++ ++ + + A Q ++ G DIV+ L+ Y K G
Sbjct: 315 EMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWG 374
Query: 360 KMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGV 411
+M+++++ +++ M + + ++ GYG GR A+ + + GV
Sbjct: 375 RMEDARN-VFDRMP---RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGV 422
|
Length = 697 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 54.7 bits (133), Expect = 4e-10
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 304 RNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMV 337
+ + PD+VTY TL++GLC+ G+V EA +L M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 5e-10
Identities = 83/368 (22%), Positives = 147/368 (39%), Gaps = 51/368 (13%)
Query: 180 YVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPN 239
+V+ G + ++ F K + + S N L+ G K D+ +Y M G+ P+
Sbjct: 131 FVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPD 186
Query: 240 THTF-----------------NILTHV--FCKNGDVDKVNGFLEKIEEEG--------FD 272
+TF + HV F DVD VN + + G FD
Sbjct: 187 VYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFD 246
Query: 273 P----DLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVRE 328
D +++N +IS Y + G + L+ M +V PDL+T T++++ G R
Sbjct: 247 RMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERL 306
Query: 329 AHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQ 388
++ +V G + D+ N+LI Y G E++ + M D + ++
Sbjct: 307 GREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMIS 362
Query: 389 GYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALC----QDNRPFAATSLLERIGQD 444
GY K G AL +++ VS +I +++ C + L ER G
Sbjct: 363 GYEKNGLPDKALETYALMEQDNVS-PDEITIASVLSACACLGDLDVGVKLHELAERKGLI 421
Query: 445 GYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEA 504
YV + N L+E KC + AL + + ++++ ++ ++I R EA
Sbjct: 422 SYVV---VANALIEMYSKCKCIDKALEVFHNIPEKDV----ISWTSIIAGLRLNNRCFEA 474
Query: 505 VSLMDEML 512
+ +ML
Sbjct: 475 LIFFRQML 482
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 6e-10
Identities = 58/264 (21%), Positives = 111/264 (42%), Gaps = 5/264 (1%)
Query: 202 QPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIG--ICPNTHTFNILTHVFCKNGDVDKV 259
+P V N L++ + +D+ + V EM I P+ T L G VD+
Sbjct: 539 KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRA 598
Query: 260 NGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNG 319
+ I E Y ++S +KG + A +Y M ++ V PD V ++ L++
Sbjct: 599 KEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDV 658
Query: 320 LCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPD 379
G + +A ++ +G+ VSY++L+ A +++ L ++ + P
Sbjct: 659 AGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT 718
Query: 380 TFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPF-AATSLL 438
T ++ + +L AL ++ E++R G+ + Y L+VA + LL
Sbjct: 719 VSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA-SERKDDADVGLDLL 777
Query: 439 ERIGQDGYVPSLEIYNELMESLCK 462
+ +DG P+L + + LC
Sbjct: 778 SQAKEDGIKPNLVMCRCIT-GLCL 800
|
Length = 1060 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 54.3 bits (132), Expect = 6e-10
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 270 GFDPDLVTYNTLISSYCKKGRLNDAFYLYRIM 301
G PD+VTYNTLI C+ GR+++A L M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 6e-09
Identities = 20/35 (57%), Positives = 26/35 (74%)
Query: 311 VTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDI 345
VTY TL++GLCK G+V EA +LF M RG+ PD+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 1e-08
Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 448 PSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFC 496
P + YN L++ CK V +AL L +EM R IKP++ TY LI C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 1e-08
Identities = 29/107 (27%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
Query: 274 DLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLF 333
D+V++N L++ Y G+ + A L+ M V PD VT+ +L+ + G V + + F
Sbjct: 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYF 612
Query: 334 HRMVHR-GLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPD 379
H M + ++P++ Y ++ + GK+ E+ + + +M I PD
Sbjct: 613 HSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPD 656
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 49.7 bits (120), Expect = 3e-08
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 483 PSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYC 531
P + TY LI +C G+ EA+ L +EM + G+ P+ +LI+G C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 49.3 bits (119), Expect = 3e-08
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 339 RGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEM 371
+GL PD+V+YNTLI C+ G++ E+ LL EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 3e-07
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 311 VTYTTLMNGLCKEGKVREAHQLFHRMVHRGL 341
VTY +L++G CK GK+ EA +LF M +G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 5e-07
Identities = 64/332 (19%), Positives = 118/332 (35%), Gaps = 45/332 (13%)
Query: 239 NTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDA-FYL 297
+TH N C +G +++ LE ++E D Y L C+ R + +
Sbjct: 50 STHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFR-LCEWKRAVEEGSRV 108
Query: 298 YRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCK 357
+ + +++ + G++ A +F +M R D+ S+N L+ Y K
Sbjct: 109 CSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPER----DLFSWNVLVGGYAK 164
Query: 358 EGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDI 417
G E+ L + M+ G+ PD +T +++ G L + + RF
Sbjct: 165 AGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRF-------- 216
Query: 418 YDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMV 477
G+ +++ N L+ KC V A L+ D M
Sbjct: 217 ---------------------------GFELDVDVVNALITMYVKCGDVVSARLVFDRMP 249
Query: 478 DRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVN 537
R+ ++ A+I + G E + L M E + PD +I+ + D
Sbjct: 250 RRDC----ISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDER 305
Query: 538 KAEALLGFFAKKFQIYDTESYNAVFNMFAEDG 569
+ G+ K D N++ M+ G
Sbjct: 306 LGREMHGYVVKTGFAVDVSVCNSLIQMYLSLG 337
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 7e-07
Identities = 85/403 (21%), Positives = 153/403 (37%), Gaps = 82/403 (20%)
Query: 163 VDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCID 222
VDV LI+ YVK G + + R D + +S N +++G +
Sbjct: 222 VDVVNALIT-------MYVKCGDV----VSARLVFDRMPRRDCISWNAMISGYFENGECL 270
Query: 223 QCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDV---DKVNGFLEKIEEEGFDPDLVTYN 279
+ +++ M + + P+ T + GD +++G++ K GF D+ N
Sbjct: 271 EGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVK---TGFAVDVSVCN 327
Query: 280 TLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHR 339
+LI Y G +A ++ M + D V++T +++G K G +A + + M
Sbjct: 328 SLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQD 383
Query: 340 GLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSA 399
+SPD ++ +++ A G + L G+ +++ Y K + A
Sbjct: 384 NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKA 443
Query: 400 LNLVVELQRFGVSISRDIYDYLIVALCQDNRPF---------------------AATSLL 438
L + + V IS + +I L +NR F AA S
Sbjct: 444 LEVFHNIPEKDV-IS---WTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSAC 499
Query: 439 ERIGQ------------------DGYVPSLEIYNELMESLCKCDSVADAL----LLKDEM 476
RIG DG++P N L++ +C + A + ++
Sbjct: 500 ARIGALMCGKEIHAHVLRTGIGFDGFLP-----NALLDLYVRCGRMNYAWNQFNSHEKDV 554
Query: 477 VDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPD 519
V NI L+ + G+ AV L + M+ESG+ PD
Sbjct: 555 VSWNI---------LLTGYVAHGKGSMAVELFNRMVESGVNPD 588
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 8e-07
Identities = 72/347 (20%), Positives = 132/347 (38%), Gaps = 62/347 (17%)
Query: 289 GRLNDAFYLYRIMYRRNVLP-DLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVS 347
GR +A L+ I+ TY L+ +R ++ + G PD
Sbjct: 101 GRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYM 160
Query: 348 YNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVEL- 406
N ++ + K G + +++ L EM + + I+ G G A L E+
Sbjct: 161 MNRVLLMHVKCGMLIDARRLFDEMPERNLA----SWGTIIGGLVDAGNYREAFALFREMW 216
Query: 407 QRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLE--IYNE------LME 458
+ + R +V L R A R GQ + L+ + + L++
Sbjct: 217 EDGSDAEPR----TFVVML----RASAGLGSA-RAGQQLHCCVLKTGVVGDTFVSCALID 267
Query: 459 SLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLP 518
KC + DA + D M ++ + + +++ + G S EA+ L EM +SG+
Sbjct: 268 MYSKCGDIEDARCVFDGMPEK----TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323
Query: 519 D----SQICRV----------------LI-NGYCMEKDVNKAEALLGFFAKKFQIYDTE- 556
D S + R+ LI G+ D+ AL+ ++K ++ D
Sbjct: 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGF--PLDIVANTALVDLYSKWGRMEDARN 381
Query: 557 -----------SYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLT 592
S+NA+ + G +K +E+ +R + G APN++T
Sbjct: 382 VFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVT 428
|
Length = 697 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 1e-06
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 276 VTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPD 309
VTYNTLI CK GR+ +A L++ M R + PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 3e-06
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 346 VSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDT 380
V+YNTLI CK G+++E+ L EM GI PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 3e-06
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 346 VSYNTLIFAYCKEGKMQESKSLLYEMMGNGI 376
V+YN+LI YCK GK++E+ L EM G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 6e-06
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 7/100 (7%)
Query: 191 KTFRKTLDV-------GFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTF 243
K ++K L++ +P++ + N L+ L + N + + +V EM R+G+CPNT T+
Sbjct: 698 KNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITY 757
Query: 244 NILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLIS 283
+IL + D D L + +E+G P+LV +
Sbjct: 758 SILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITG 797
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 60/311 (19%), Positives = 123/311 (39%), Gaps = 33/311 (10%)
Query: 200 GFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKV 259
GF + CN L+ L L + +V+ M + ++ + + KNG DK
Sbjct: 318 GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKA 373
Query: 260 NGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNG 319
+E++ PD +T +++S+ G L+ L+ + R+ ++ +V L+
Sbjct: 374 LETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEM 433
Query: 320 LCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPD 379
K + +A ++FH + + D++S+ ++I + E+ +M+ + P+
Sbjct: 434 YSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPN 488
Query: 380 TFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLE 439
+ T + + G L+ + + R G+ +L P A L
Sbjct: 489 SVTLIAALSACARIGALMCGKEIHAHVLRTGIGFD----GFL---------PNALLDLYV 535
Query: 440 RIGQDGYV--------PSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRAL 491
R G+ Y + +N L+ + A+ L + MV+ + P T+ +L
Sbjct: 536 RCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISL 595
Query: 492 ICCFCGIGRSG 502
+ C RSG
Sbjct: 596 L---CACSRSG 603
|
Length = 857 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 2e-05
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 276 VTYNTLISSYCKKGRLNDAFYLYRIMYRRNV 306
VTYN+LIS YCK G+L +A L++ M + V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 3e-05
Identities = 35/137 (25%), Positives = 56/137 (40%), Gaps = 7/137 (5%)
Query: 393 EGRLLSALNLVVELQRFGVSISRDI--YDYLIVALCQDNRPFAATSLLERIGQDGYVPSL 450
GR AL L E+ G + YD L+ A ++ + G+ P
Sbjct: 100 CGRHREALELF-EILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQ 158
Query: 451 EIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDE 510
+ N ++ KC + DA L DEM +RN L+++ +I G EA +L E
Sbjct: 159 YMMNRVLLMHVKCGMLIDARRLFDEMPERN----LASWGTIIGGLVDAGNYREAFALFRE 214
Query: 511 MLESGMLPDSQICRVLI 527
M E G + + V++
Sbjct: 215 MWEDGSDAEPRTFVVML 231
|
Length = 697 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 40.8 bits (97), Expect = 3e-05
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 235 GICPNTHTFNILTHVFCKNGDVDKVNGFLEKIE 267
G+ P+ T+N L C+ G VD+ L+++E
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 5e-05
Identities = 16/34 (47%), Positives = 18/34 (52%)
Query: 487 TYRALICCFCGIGRSGEAVSLMDEMLESGMLPDS 520
TY LI C GR EA+ L EM E G+ PD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 9e-05
Identities = 12/34 (35%), Positives = 14/34 (41%)
Query: 310 LVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSP 343
L TY L+ L K G A + M GL P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 1e-04
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 275 LVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLP 308
L TYN L+ + K G + A + M + P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 4e-04
Identities = 32/136 (23%), Positives = 59/136 (43%), Gaps = 18/136 (13%)
Query: 210 FLLNGLLKLNCIDQCWQVYEEMGRIGICPNTH--------TFNILTHVFCKNGDVDKVNG 261
FL N LL L Y GR+ N ++NIL + +G
Sbjct: 525 FLPNALLDL---------YVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVE 575
Query: 262 FLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRR-NVLPDLVTYTTLMNGL 320
++ E G +PD VT+ +L+ + + G + + M + ++ P+L Y +++ L
Sbjct: 576 LFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLL 635
Query: 321 CKEGKVREAHQLFHRM 336
+ GK+ EA+ ++M
Sbjct: 636 GRAGKLTEAYNFINKM 651
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.001
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 479 RNIKPSLSTYRALICCFCGIGRSGEAVSLMDEM 511
+ +KP + TY LI C GR EAV L+DEM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 241 HTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPD 274
T+N L CK G V++ ++++E G +PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 609 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.95 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.95 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.93 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.91 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.91 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.91 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.89 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.89 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.89 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.88 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.88 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.88 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.88 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.88 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.86 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.83 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.8 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.78 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.77 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.77 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.75 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.74 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.73 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.68 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.66 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.65 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.64 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.63 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.63 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.62 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.61 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.61 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.61 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.6 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.59 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.59 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.57 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.56 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.56 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.56 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.54 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.54 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.52 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.52 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.51 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.5 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.47 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.43 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.42 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.41 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.41 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.4 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.4 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.39 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.39 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.37 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.37 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.37 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.35 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.35 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.33 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.32 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.31 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.28 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.28 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.27 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.27 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.2 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.19 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.19 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.19 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.19 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.1 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.09 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.09 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.09 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.08 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.06 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.01 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.99 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.99 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.97 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.96 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.96 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.95 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.92 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.92 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.88 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.87 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.86 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.84 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.83 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.81 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.8 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.8 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.79 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.74 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.71 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.69 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.68 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.67 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.63 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.62 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.62 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.61 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.6 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.59 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.58 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.58 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.56 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.56 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.54 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.54 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.54 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.49 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.49 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.48 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.45 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.43 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.4 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.35 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.32 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.26 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.26 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.24 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.2 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.2 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.15 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.09 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.08 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.02 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.0 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.98 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.97 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.96 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.92 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.91 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.88 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.87 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.87 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.83 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.83 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.82 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.82 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.81 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.81 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.73 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.73 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.73 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.73 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.72 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.71 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.7 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.68 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.67 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.67 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.66 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.65 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.64 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.64 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.63 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.62 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.62 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.59 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.59 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.54 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.53 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.49 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.49 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.48 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.48 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.46 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.46 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.45 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.44 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.43 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.41 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.41 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.39 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.38 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.38 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.36 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.34 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.31 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.27 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.26 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.25 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.23 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.16 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.12 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.07 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.07 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.05 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 97.03 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.01 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.97 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 96.93 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.87 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.81 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.8 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.75 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.7 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.68 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.64 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.64 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.63 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.6 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.6 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.58 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.42 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.37 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.36 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.34 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.31 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.29 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.28 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.27 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.24 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.2 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.14 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.12 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 96.07 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.06 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.05 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.03 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.99 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.97 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.9 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.87 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.85 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.84 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.76 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.69 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.68 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.68 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.57 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.57 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.53 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.48 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.45 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.43 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.36 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.32 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.29 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.25 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.18 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 95.07 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.06 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.05 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.97 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.95 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.95 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.87 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.77 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.64 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.61 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.52 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.45 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.4 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.37 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.35 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.08 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.03 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.45 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.33 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 93.25 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.01 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.0 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.83 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 92.81 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.77 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 92.72 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 92.66 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 92.37 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 92.37 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 92.36 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.36 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 92.22 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 92.04 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 91.56 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 91.44 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 91.13 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 91.06 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 90.75 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 90.58 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 90.52 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 90.43 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 90.39 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 90.08 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 89.91 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 89.58 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 89.48 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 89.09 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 89.06 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 88.87 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 88.84 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 88.66 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 88.46 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 88.39 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 88.27 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 88.27 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 88.25 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 88.1 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 87.67 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 87.32 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 86.95 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 86.3 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 86.26 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 86.23 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 86.08 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 85.98 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 85.92 | |
| PRK09687 | 280 | putative lyase; Provisional | 85.88 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 85.77 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 85.1 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 84.79 | |
| PRK09687 | 280 | putative lyase; Provisional | 84.54 | |
| PF07575 | 566 | Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0 | 84.36 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 83.56 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 83.28 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 83.21 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 83.1 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 83.02 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 82.96 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 82.92 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 82.74 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 82.4 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 81.74 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 81.49 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 81.43 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 80.55 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 80.45 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-69 Score=573.08 Aligned_cols=497 Identities=18% Similarity=0.233 Sum_probs=467.6
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhc
Q 037911 93 HEISRVLLRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISC 172 (609)
Q Consensus 93 ~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 172 (609)
..++..+.+ .|+...|+++|+++.+..-..++...+..++..|.+.|..++|..+++.|.. ++..+|+.++.
T Consensus 374 ~~~y~~l~r-~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~------pd~~Tyn~LL~- 445 (1060)
T PLN03218 374 IDAYNRLLR-DGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN------PTLSTFNMLMS- 445 (1060)
T ss_pred HHHHHHHHH-CcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC------CCHHHHHHHHH-
Confidence 344444433 4799999999999997544567888888999999999999999999887752 67899999999
Q ss_pred cccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 037911 173 TEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCK 252 (609)
Q Consensus 173 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 252 (609)
+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++
T Consensus 446 ------a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k 519 (1060)
T PLN03218 446 ------VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR 519 (1060)
T ss_pred ------HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhh--CCccCCHhhHHHHHHHHHhcCCHHHHH
Q 037911 253 NGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYR--RNVLPDLVTYTTLMNGLCKEGKVREAH 330 (609)
Q Consensus 253 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~p~~~~~~~ll~~~~~~~~~~~a~ 330 (609)
.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.
T Consensus 520 ~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~ 599 (1060)
T PLN03218 520 AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999986 678999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 037911 331 QLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFG 410 (609)
Q Consensus 331 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 410 (609)
++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|
T Consensus 600 elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G 679 (1060)
T PLN03218 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG 679 (1060)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 037911 411 VSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRA 490 (609)
Q Consensus 411 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 490 (609)
+.|+..+|+.++.+|++.|++++|.++|++|...|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.
T Consensus 680 ~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~s 759 (1060)
T PLN03218 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSI 759 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----c-------------------CCHHHHHHHHHHHH
Q 037911 491 LICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCM----E-------------------KDVNKAEALLGFFA 547 (609)
Q Consensus 491 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~~ 547 (609)
++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+ . +..+.|..+|++|.
T Consensus 760 LL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~ 839 (1060)
T PLN03218 760 LLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETI 839 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999876542 1 12467999999999
Q ss_pred HcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHhcc
Q 037911 548 KKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMIHSLWKG 603 (609)
Q Consensus 548 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 603 (609)
+.|+.||..+|+.++.+++..+....+..+++.|...+..|+..+|+++|+++++.
T Consensus 840 ~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~ 895 (1060)
T PLN03218 840 SAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY 895 (1060)
T ss_pred HCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC
Confidence 99999999999999999999999999999999999889999999999999998754
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-68 Score=564.50 Aligned_cols=484 Identities=18% Similarity=0.244 Sum_probs=454.9
Q ss_pred hHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCH
Q 037911 107 VSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLI 186 (609)
Q Consensus 107 ~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~ 186 (609)
..++...++... ..++...|..++..|++.|++++|+++|++|.+. +..+++..++..++. .|.+.|.+
T Consensus 354 ~~~~~~~~~~~~---~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~-gvv~~~~v~~~~li~-------~~~~~g~~ 422 (1060)
T PLN03218 354 ENSLAAYNGGVS---GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKR-GLLDMDKIYHAKFFK-------ACKKQRAV 422 (1060)
T ss_pred hhhHHHhccccC---CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhC-CCCCchHHHHHHHHH-------HHHHCCCH
Confidence 345555555443 3557888999999999999999999999999876 334566677778888 89999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 037911 187 RESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKI 266 (609)
Q Consensus 187 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 266 (609)
++|+.+|+.|.. |+..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 423 ~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM 498 (1060)
T PLN03218 423 KEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEM 498 (1060)
T ss_pred HHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 999999999874 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCC
Q 037911 267 EEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVH--RGLSPD 344 (609)
Q Consensus 267 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~--~g~~p~ 344 (609)
.+.|+.||..+|+.+|.+|++.|++++|+++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+ .|+.||
T Consensus 499 ~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD 578 (1060)
T PLN03218 499 VNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD 578 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999986 679999
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037911 345 IVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVA 424 (609)
Q Consensus 345 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 424 (609)
..+|+.+|.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+
T Consensus 579 ~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a 658 (1060)
T PLN03218 579 HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDV 658 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHH
Q 037911 425 LCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEA 504 (609)
Q Consensus 425 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 504 (609)
|++.|+.++|.+++++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|
T Consensus 659 ~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeA 738 (1060)
T PLN03218 659 AGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKA 738 (1060)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHh----c------------
Q 037911 505 VSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAE----D------------ 568 (609)
Q Consensus 505 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~------------ 568 (609)
.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|..||..+|+.++..|.+ .
T Consensus 739 lelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~ 818 (1060)
T PLN03218 739 LEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDS 818 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhc
Confidence 999999999999999999999999999999999999999999999999999999999876432 1
Q ss_pred -------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHhcccc
Q 037911 569 -------GDLSKLMELQKRFLRLGFAPNNLTCKYMIHSLWKGME 605 (609)
Q Consensus 569 -------g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 605 (609)
+..++|..+|++|++.|+.||..||+.+|.++++.+.
T Consensus 819 g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~ 862 (1060)
T PLN03218 819 GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHD 862 (1060)
T ss_pred cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccccc
Confidence 2246799999999999999999999999988877664
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-64 Score=534.43 Aligned_cols=469 Identities=16% Similarity=0.228 Sum_probs=444.2
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhh
Q 037911 92 AHEISRVLLRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLIS 171 (609)
Q Consensus 92 ~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 171 (609)
...++..+ ...++++.|+++|+|+....++.|+..+|+.++.++++.++++.|.+++..+.+. +..++..+++.++.
T Consensus 90 ~~~~i~~l-~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~--g~~~~~~~~n~Li~ 166 (697)
T PLN03081 90 LCSQIEKL-VACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESS--GFEPDQYMMNRVLL 166 (697)
T ss_pred HHHHHHHH-HcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCcchHHHHHHHH
Confidence 34445544 3457999999999999976678899999999999999999999999999999876 56678999999999
Q ss_pred ccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 037911 172 CTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFC 251 (609)
Q Consensus 172 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 251 (609)
.|.+.|++++|.++|++|.+ ||..+||.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+++
T Consensus 167 -------~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~ 235 (697)
T PLN03081 167 -------MHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASA 235 (697)
T ss_pred -------HHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHh
Confidence 99999999999999999974 8999999999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHH
Q 037911 252 KNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQ 331 (609)
Q Consensus 252 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 331 (609)
+.|..+.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|.. +|..+|+.++.+|++.|++++|.+
T Consensus 236 ~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~ 311 (697)
T PLN03081 236 GLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALC 311 (697)
T ss_pred cCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999975 489999999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 037911 332 LFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGV 411 (609)
Q Consensus 332 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 411 (609)
+|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+
T Consensus 312 lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--- 388 (697)
T PLN03081 312 LYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR--- 388 (697)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999964
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHH
Q 037911 412 SISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVD-RNIKPSLSTYRA 490 (609)
Q Consensus 412 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~ 490 (609)
+|..+|+.+|.+|++.|+.++|.++|++|...|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.
T Consensus 389 -~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~ 467 (697)
T PLN03081 389 -KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYAC 467 (697)
T ss_pred -CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHh
Confidence 688999999999999999999999999999999999999999999999999999999999999986 699999999999
Q ss_pred HHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcC
Q 037911 491 LICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIY-DTESYNAVFNMFAEDG 569 (609)
Q Consensus 491 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 569 (609)
++++|++.|++++|.+++++| ++.|+..+|+.|+.+|...|+++.|..+++++.+. .| +..+|..+++.|++.|
T Consensus 468 li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L~~~y~~~G 542 (697)
T PLN03081 468 MIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM--GPEKLNNYVVLLNLYNSSG 542 (697)
T ss_pred HHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--CCCCCcchHHHHHHHHhCC
Confidence 999999999999999999887 68999999999999999999999999999999755 44 5679999999999999
Q ss_pred CHHHHHHHHHHHHHcCCC
Q 037911 570 DLSKLMELQKRFLRLGFA 587 (609)
Q Consensus 570 ~~~~A~~~~~~m~~~g~~ 587 (609)
++++|.+++++|.+.|+.
T Consensus 543 ~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 543 RQAEAAKVVETLKRKGLS 560 (697)
T ss_pred CHHHHHHHHHHHHHcCCc
Confidence 999999999999999975
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-64 Score=549.33 Aligned_cols=474 Identities=17% Similarity=0.195 Sum_probs=241.3
Q ss_pred ChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhC
Q 037911 105 DSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVG 184 (609)
Q Consensus 105 ~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g 184 (609)
+...|+++|+.+. .||..+|+.++.+|++.|++++|.++|++|... +..|+..+|..++. ++...+
T Consensus 136 ~~~~A~~~f~~m~-----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~--g~~Pd~~t~~~ll~-------~~~~~~ 201 (857)
T PLN03077 136 ELVHAWYVFGKMP-----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWA--GVRPDVYTFPCVLR-------TCGGIP 201 (857)
T ss_pred ChHHHHHHHhcCC-----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCChhHHHHHHH-------HhCCcc
Confidence 4444444444443 234444444444444444444444444444432 33344444444444 444444
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 037911 185 LIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLE 264 (609)
Q Consensus 185 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 264 (609)
+++.+.+++..+.+.|+.|++.+||.|+.+|++.|++++|.++|++|.. ||..+|+.+|.+|++.|++++|.++|+
T Consensus 202 ~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~ 277 (857)
T PLN03077 202 DLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFF 277 (857)
T ss_pred chhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHH
Confidence 4444444444444444444444555555555555555555555555432 444455555555555555555555555
Q ss_pred HHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 037911 265 KIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPD 344 (609)
Q Consensus 265 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~ 344 (609)
+|.+.|+.||..+|+.++.++++.|+.+.|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .||
T Consensus 278 ~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d 353 (857)
T PLN03077 278 TMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKD 353 (857)
T ss_pred HHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCC
Confidence 5555555555555555555555555555555555555555555555555555555555555555555555543 234
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037911 345 IVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVA 424 (609)
Q Consensus 345 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 424 (609)
..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++++.+.+.|+.++..+++.++.+
T Consensus 354 ~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~ 433 (857)
T PLN03077 354 AVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEM 433 (857)
T ss_pred eeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 45555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHH
Q 037911 425 LCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEA 504 (609)
Q Consensus 425 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 504 (609)
|++.|++++|.++|++|.+ ++..+|+.+|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+.+.+
T Consensus 434 y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~ 508 (857)
T PLN03077 434 YSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCG 508 (857)
T ss_pred HHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHh
Confidence 5555555555555555432 2344455555555555555555555555543 2444444444333333333322222
Q ss_pred HHHHHHHHHCCC------------------------------CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC
Q 037911 505 VSLMDEMLESGM------------------------------LPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYD 554 (609)
Q Consensus 505 ~~~~~~~~~~~~------------------------------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 554 (609)
.+++..+.+.|+ .||..+|+.++.+|++.|+.++|.++|++|.+.|..||
T Consensus 509 ~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd 588 (857)
T PLN03077 509 KEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD 588 (857)
T ss_pred HHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Confidence 222222222222 23444455555555566666666666666666666666
Q ss_pred hhcHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCChhhHHHHHHHHhcccc
Q 037911 555 TESYNAVFNMFAEDGDLSKLMELQKRFL-RLGFAPNNLTCKYMIHSLWKGME 605 (609)
Q Consensus 555 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~ll~~~~~~~~ 605 (609)
..+|+.++.+|.+.|++++|.++|+.|. +.|+.||..+|+.+++.|+++|.
T Consensus 589 ~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~ 640 (857)
T PLN03077 589 EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGK 640 (857)
T ss_pred cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC
Confidence 6666666666666666666666666665 45666666666666666666554
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-63 Score=534.72 Aligned_cols=496 Identities=16% Similarity=0.215 Sum_probs=366.1
Q ss_pred CChHHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHH
Q 037911 90 LGAHEISRVLLRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDL 169 (609)
Q Consensus 90 ~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 169 (609)
.+.+.++..+.+ .|+++.|+++|+.+.. .|..||..+|+.++++++..+++..+.+++..+.+. +..++..+++.+
T Consensus 153 ~~~n~li~~~~~-~g~~~~A~~~f~~M~~-~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~n~L 228 (857)
T PLN03077 153 FSWNVLVGGYAK-AGYFDEALCLYHRMLW-AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRF--GFELDVDVVNAL 228 (857)
T ss_pred eEHHHHHHHHHh-CCCHHHHHHHHHHHHH-cCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHc--CCCcccchHhHH
Confidence 345566666544 4789999999999985 477787777766655555555555555555444433 233344444444
Q ss_pred hhccccchh------------------------HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 037911 170 ISCTEDCNW------------------------AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCW 225 (609)
Q Consensus 170 ~~~~~~~~~------------------------~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 225 (609)
+.++..++. +|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+.+.|.
T Consensus 229 i~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~ 308 (857)
T PLN03077 229 ITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGR 308 (857)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHH
Confidence 441000000 56666666666666666666666666666666666666666666666
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCC
Q 037911 226 QVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRN 305 (609)
Q Consensus 226 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 305 (609)
+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|+++|++|.+.|
T Consensus 309 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g 384 (857)
T PLN03077 309 EMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDN 384 (857)
T ss_pred HHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhC
Confidence 666666666666666666666666666666666666666664 3466666666666666666666666666666666
Q ss_pred ccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHH
Q 037911 306 VLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQI 385 (609)
Q Consensus 306 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 385 (609)
+.||..||+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.||.+|++.|++++|.++|++|.+ +|..+|+.
T Consensus 385 ~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~ 460 (857)
T PLN03077 385 VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTS 460 (857)
T ss_pred CCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666653 35666777
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 037911 386 IVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDS 465 (609)
Q Consensus 386 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 465 (609)
++.+|++.|+.++|+.+|++|.. ++.||..+|+.++.+|++.|+.+.+.+++..+.+.|+.++..+++.|+.+|++.|+
T Consensus 461 mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~ 539 (857)
T PLN03077 461 IIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGR 539 (857)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCC
Confidence 77777777777777777777764 46777777777777777777777777777777777777788888888888888899
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 037911 466 VADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGF 545 (609)
Q Consensus 466 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 545 (609)
+++|.++|+.+ .||..+|+.+|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.
T Consensus 540 ~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~ 614 (857)
T PLN03077 540 MNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHS 614 (857)
T ss_pred HHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHH
Confidence 99999888887 4899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH-HcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccccc
Q 037911 546 FA-KKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMIHSLWKGMER 606 (609)
Q Consensus 546 ~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 606 (609)
|. +.|+.|+..+|+.++++|++.|++++|.+++++| .+.||..+|++|+.++...++.
T Consensus 615 M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~ 673 (857)
T PLN03077 615 MEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNACRIHRHV 673 (857)
T ss_pred HHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCh
Confidence 99 6788999999999999999999999999999999 4899999999999999876654
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-61 Score=509.76 Aligned_cols=459 Identities=17% Similarity=0.216 Sum_probs=437.5
Q ss_pred CCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCC
Q 037911 123 KPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQ 202 (609)
Q Consensus 123 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 202 (609)
..+..+|+.++..+.+.|++++|.++|+.+... .+..++..+|..++. ++.+.++++.|.+++..|.+.|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~-~~~~~~~~t~~~ll~-------a~~~~~~~~~a~~l~~~m~~~g~~ 155 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAG-CPFTLPASTYDALVE-------ACIALKSIRCVKAVYWHVESSGFE 155 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhc-CCCCCCHHHHHHHHH-------HHHhCCCHHHHHHHHHHHHHhCCC
Confidence 456778999999999999999999999999865 345678899999999 999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 037911 203 PSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLI 282 (609)
Q Consensus 203 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 282 (609)
||..+||.++.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++
T Consensus 156 ~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll 231 (697)
T PLN03081 156 PDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVML 231 (697)
T ss_pred cchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHH
Confidence 9999999999999999999999999999964 899999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChH
Q 037911 283 SSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQ 362 (609)
Q Consensus 283 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 362 (609)
.++++.|..+.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+ +|..+|+.+|.+|++.|+++
T Consensus 232 ~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~ 307 (697)
T PLN03081 232 RASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSE 307 (697)
T ss_pred HHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999999999999999999999999999999964 59999999999999999999
Q ss_pred HHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 037911 363 ESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIG 442 (609)
Q Consensus 363 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 442 (609)
+|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.
T Consensus 308 eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~ 387 (697)
T PLN03081 308 EALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP 387 (697)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHH-CCCCCCHH
Q 037911 443 QDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLE-SGMLPDSQ 521 (609)
Q Consensus 443 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~ 521 (609)
+ ||..+||.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+ .|+.|+..
T Consensus 388 ~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~ 463 (697)
T PLN03081 388 R----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAM 463 (697)
T ss_pred C----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcc
Confidence 3 688999999999999999999999999999999999999999999999999999999999999986 59999999
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHH
Q 037911 522 ICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPN-NLTCKYMIHSL 600 (609)
Q Consensus 522 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~ 600 (609)
+|+.++++|++.|++++|.++++++ +..|+..+|++++.+|...|+++.|.++++++. ++.|+ ..+|..|+..|
T Consensus 464 ~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~--~~~p~~~~~y~~L~~~y 538 (697)
T PLN03081 464 HYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLY--GMGPEKLNNYVVLLNLY 538 (697)
T ss_pred chHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh--CCCCCCCcchHHHHHHH
Confidence 9999999999999999999998765 458999999999999999999999999999997 55675 56999999999
Q ss_pred hccccc
Q 037911 601 WKGMER 606 (609)
Q Consensus 601 ~~~~~~ 606 (609)
++.|..
T Consensus 539 ~~~G~~ 544 (697)
T PLN03081 539 NSSGRQ 544 (697)
T ss_pred HhCCCH
Confidence 998865
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-30 Score=289.65 Aligned_cols=513 Identities=14% Similarity=0.060 Sum_probs=340.1
Q ss_pred cCCChhhhhhhhhcCcCCCCChHHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHH
Q 037911 71 KGDSHLTLLQNDLKPLLPHLGAHEISRVLLRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLC 150 (609)
Q Consensus 71 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 150 (609)
+...+...++..+...+........++......|+++.|.++|+.+... .+.+...+..++..+...|++++|.+.++
T Consensus 344 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 421 (899)
T TIGR02917 344 RVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATEL--DPENAAARTQLGISKLSQGDPSEAIADLE 421 (899)
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 3334444444444444333333333444444456666666666666542 12244555555555555666666655555
Q ss_pred HHHHhhC-------------------------------CCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhC
Q 037911 151 ELVELVK-------------------------------DCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDV 199 (609)
Q Consensus 151 ~~~~~~~-------------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 199 (609)
.+.+..+ ..|.+..++..+.. .|...|++++|.+.|+++.+.
T Consensus 422 ~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~A~~~~~~a~~~ 494 (899)
T TIGR02917 422 TAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGA-------IYLGKGDLAKAREAFEKALSI 494 (899)
T ss_pred HHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHH-------HHHhCCCHHHHHHHHHHHHhh
Confidence 5554311 12233344444444 556666666666666666554
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHH
Q 037911 200 GFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYN 279 (609)
Q Consensus 200 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 279 (609)
. +.+...+..+...+...|++++|.+.|+++.+.+ +.+..++..+...+.+.|+.++|...++++.+.+ +.+...+.
T Consensus 495 ~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 571 (899)
T TIGR02917 495 E-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPAL 571 (899)
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHH
Confidence 3 3344455555666666666666666666665542 3345556666666666666666666666665543 23455566
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 037911 280 TLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEG 359 (609)
Q Consensus 280 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 359 (609)
.++..+.+.|++++|..+++++.+... .+...|..+...+...|++++|...|+.+.+.. +.+...+..+..++.+.|
T Consensus 572 ~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 649 (899)
T TIGR02917 572 ALAQYYLGKGQLKKALAILNEAADAAP-DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMK 649 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcC
Confidence 666677777777777777777665432 255667777777777777777777777776652 234556667777777777
Q ss_pred ChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 037911 360 KMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLE 439 (609)
Q Consensus 360 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 439 (609)
++++|..+++++.+.. +.+..++..++..+...|++++|..+++.+.+.+ +.+...+..+...+...|++++|...++
T Consensus 650 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 727 (899)
T TIGR02917 650 NYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYR 727 (899)
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 7777777777776642 2346667777777777777777777777777665 3466677777778888888888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCC
Q 037911 440 RIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPD 519 (609)
Q Consensus 440 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~ 519 (609)
.+...+ |+..++..++.++.+.|++++|.+.++.+.+... .+...+..+...|...|+.++|...|+++.+.. +.+
T Consensus 728 ~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~ 803 (899)
T TIGR02917 728 KALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHP-NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDN 803 (899)
T ss_pred HHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCC
Confidence 876654 3446666777888888888888888888877543 466777888888888888888888888888754 557
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 037911 520 SQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMIHS 599 (609)
Q Consensus 520 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 599 (609)
..++..++..+...|+ .+|..+++++.+.. +-+...+..++..+...|++++|.++++++++.+.. |..++..+...
T Consensus 804 ~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~ 880 (899)
T TIGR02917 804 AVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALA 880 (899)
T ss_pred HHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHH
Confidence 7788888888888888 77888888888653 334567788888999999999999999999987644 88888889999
Q ss_pred Hhccccc
Q 037911 600 LWKGMER 606 (609)
Q Consensus 600 ~~~~~~~ 606 (609)
+++.|+.
T Consensus 881 ~~~~g~~ 887 (899)
T TIGR02917 881 LLATGRK 887 (899)
T ss_pred HHHcCCH
Confidence 9988764
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-30 Score=290.50 Aligned_cols=459 Identities=11% Similarity=0.038 Sum_probs=401.4
Q ss_pred HHhcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchh
Q 037911 99 LLRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNW 178 (609)
Q Consensus 99 l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 178 (609)
.....++++.|+.+++.+... .+.++..|..++.++...|++++|.+.|+++++. .|.+...+..+..
T Consensus 440 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~la~------- 507 (899)
T TIGR02917 440 SYLRSGQFDKALAAAKKLEKK--QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSI---EPDFFPAAANLAR------- 507 (899)
T ss_pred HHHhcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhh---CCCcHHHHHHHHH-------
Confidence 344557788888888777652 4567889999999999999999999999999875 4556667777777
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDK 258 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (609)
.+...|++++|.+.|+++.+.+ +.+..++..+...+.+.|+.++|...++++.+.+ +.+...+..++..+.+.|++++
T Consensus 508 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 585 (899)
T TIGR02917 508 IDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKK 585 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHH
Confidence 8999999999999999999865 5678899999999999999999999999998764 4567788889999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037911 259 VNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVH 338 (609)
Q Consensus 259 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 338 (609)
|..+++.+.+.. +.+...|..+..++...|++++|+..|+++.+.+.. +...+..+...+.+.|++++|..+++++.+
T Consensus 586 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 663 (899)
T TIGR02917 586 ALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAITSLKRALE 663 (899)
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999998764 457889999999999999999999999999886543 677888999999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 037911 339 RGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIY 418 (609)
Q Consensus 339 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 418 (609)
.. +.+...+..++..+...|++++|..+++.+.+.+ +.+...+..+...+...|++++|+..++.+.+.+ |+..++
T Consensus 664 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~ 739 (899)
T TIGR02917 664 LK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNA 739 (899)
T ss_pred cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHH
Confidence 63 4457889999999999999999999999998875 4467788889999999999999999999999875 444778
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcC
Q 037911 419 DYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGI 498 (609)
Q Consensus 419 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 498 (609)
..+..++.+.|++++|...++++.... +.+...+..+...|.+.|++++|..+|+++.+... .+..++..+...+...
T Consensus 740 ~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~ 817 (899)
T TIGR02917 740 IKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP-DNAVVLNNLAWLYLEL 817 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhc
Confidence 889999999999999999999997654 56788999999999999999999999999998754 6778899999999999
Q ss_pred CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHH
Q 037911 499 GRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQ 578 (609)
Q Consensus 499 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 578 (609)
|+ .+|+.+++++.+.. +-+..++..+...+...|++++|.++++++.+.+. .+..++..++.++.+.|++++|.+++
T Consensus 818 ~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~ 894 (899)
T TIGR02917 818 KD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP-EAAAIRYHLALALLATGRKAEARKEL 894 (899)
T ss_pred Cc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99 88999999998753 44567788899999999999999999999998763 38889999999999999999999999
Q ss_pred HHHH
Q 037911 579 KRFL 582 (609)
Q Consensus 579 ~~m~ 582 (609)
++|+
T Consensus 895 ~~~~ 898 (899)
T TIGR02917 895 DKLL 898 (899)
T ss_pred HHHh
Confidence 9997
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-22 Score=223.51 Aligned_cols=462 Identities=14% Similarity=0.062 Sum_probs=283.8
Q ss_pred HHhcCCChhHHHHHHHHhhhcCCCCCCHH-hHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccch
Q 037911 99 LLRCQSDSVSALTFFNWVKNDLEIKPTSS-NYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCN 177 (609)
Q Consensus 99 l~~~~~~~~~A~~~f~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 177 (609)
+....|+++.|++.|+.+... .+++.. ............|++++|++.|+++.+. .|.+..+...+..
T Consensus 121 ll~~~g~~~eA~~~~~~~l~~--~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~---~P~~~~~~~~LA~------ 189 (1157)
T PRK11447 121 LLATTGRTEEALASYDKLFNG--APPELDLAVEYWRLVAKLPAQRPEAINQLQRLNAD---YPGNTGLRNTLAL------ 189 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHccC--CCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHh---CCCCHHHHHHHHH------
Confidence 345567888888888877753 222221 1111122223457788888888888765 4555666666666
Q ss_pred hHHHHhCCHHHHHHHHHHHHhCCC------------------CCC-HHHH------------------------------
Q 037911 178 WAYVKVGLIRESFKTFRKTLDVGF------------------QPS-IVSC------------------------------ 208 (609)
Q Consensus 178 ~~~~~~g~~~~A~~~~~~~~~~~~------------------~~~-~~~~------------------------------ 208 (609)
.+...|+.++|+..++++.+... .+. ...+
T Consensus 190 -ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp 268 (1157)
T PRK11447 190 -LLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADP 268 (1157)
T ss_pred -HHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCc
Confidence 78888999999999988754320 000 0000
Q ss_pred ----HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHhH-----
Q 037911 209 ----NFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDP-DLVTY----- 278 (609)
Q Consensus 209 ----~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~----- 278 (609)
......+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|+..|++..+..... ....+
T Consensus 269 ~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~ 347 (1157)
T PRK11447 269 AFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLK 347 (1157)
T ss_pred chHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHH
Confidence 011334567789999999999888753 3467888888889999999999999999988763221 11111
Q ss_pred -------HHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 037911 279 -------NTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTL 351 (609)
Q Consensus 279 -------~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 351 (609)
......+.+.|++++|+..|+++.+.... +...+..+...+...|++++|++.|+++.+.. +.+...+..+
T Consensus 348 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L 425 (1157)
T PRK11447 348 VNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGL 425 (1157)
T ss_pred hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 12234677889999999999999887543 56677788888999999999999999988752 1223333333
Q ss_pred HHH------------------------------------------HHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHH
Q 037911 352 IFA------------------------------------------YCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQG 389 (609)
Q Consensus 352 i~~------------------------------------------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (609)
... +...|++++|...+++.++... -+...+..+...
T Consensus 426 ~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~ 504 (1157)
T PRK11447 426 ANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQD 504 (1157)
T ss_pred HHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 332 3345666666666666665421 134455556666
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH---------HHHHHHHHHH
Q 037911 390 YGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSL---------EIYNELMESL 460 (609)
Q Consensus 390 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~l~~~~ 460 (609)
|.+.|++++|...++++.+... .+...+..+...+...++.++|...++.+......+.. ..+..+...+
T Consensus 505 ~~~~G~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l 583 (1157)
T PRK11447 505 LRQAGQRSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRL 583 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHH
Confidence 6666666666666666655432 23333333333444455555555555443211111111 0112233445
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 037911 461 CKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAE 540 (609)
Q Consensus 461 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 540 (609)
...|+.++|..+++. .+.+...+..+...+.+.|++++|+..|+++++.. +.+...+..++..+...|++++|.
T Consensus 584 ~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~ 657 (1157)
T PRK11447 584 RDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAAR 657 (1157)
T ss_pred HHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 555666666665551 12344455666677777777777777777777643 335666777777777777777777
Q ss_pred HHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037911 541 ALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRL 584 (609)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 584 (609)
+.++.+.+.. +.+...+..+..++...|++++|.+++++++..
T Consensus 658 ~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 658 AQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 7777666441 223345566667777777777777777777654
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-22 Score=222.99 Aligned_cols=506 Identities=12% Similarity=0.066 Sum_probs=373.2
Q ss_pred hhhccCCChhhhhhhhhcCcCCCCCh-HHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHH
Q 037911 67 SSLKKGDSHLTLLQNDLKPLLPHLGA-HEISRVLLRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFA 145 (609)
Q Consensus 67 ~~l~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 145 (609)
...++.+.+...++..+...++.... ......+....++++.|++.|+.+... .+.++..+..+..++...|++++|
T Consensus 123 ~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~--~P~~~~~~~~LA~ll~~~g~~~eA 200 (1157)
T PRK11447 123 ATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNAD--YPGNTGLRNTLALLLFSSGRRDEG 200 (1157)
T ss_pred HhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHccCCHHHH
Confidence 33345556666677777776665432 223344445568999999999999874 344678889999999999999999
Q ss_pred HHHHHHHHHhhCCC-----------------CCcHHhHHHHhhccc---------------------------cchhHHH
Q 037911 146 MKMLCELVELVKDC-----------------PHSVDVFQDLISCTE---------------------------DCNWAYV 181 (609)
Q Consensus 146 ~~~~~~~~~~~~~~-----------------~~~~~~~~~l~~~~~---------------------------~~~~~~~ 181 (609)
++.++++....... +.....+...+..+. .....+.
T Consensus 201 l~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~ 280 (1157)
T PRK11447 201 FAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAV 280 (1157)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHH
Confidence 99999886531100 000011111000000 0012577
Q ss_pred HhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH---HHH------------HHH
Q 037911 182 KVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNT---HTF------------NIL 246 (609)
Q Consensus 182 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~------------~~l 246 (609)
..|++++|+..|+++++.. +.+...+..+..++.+.|++++|+..|++..+.. |+. ..+ ...
T Consensus 281 ~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~--p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 281 DSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALD--PHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCccchhHHHHHHHhhhHHHHHHH
Confidence 8899999999999999865 4578899999999999999999999999998753 321 111 122
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHH-----------
Q 037911 247 THVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTT----------- 315 (609)
Q Consensus 247 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~----------- 315 (609)
...+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|++.|++..+.... +...+..
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~ 435 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPE 435 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHH
Confidence 456778999999999999999874 335677888899999999999999999999875432 2222222
Q ss_pred -------------------------------HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHH
Q 037911 316 -------------------------------LMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQES 364 (609)
Q Consensus 316 -------------------------------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 364 (609)
+...+...|++++|.+.|++..+.. +-+...+..+...|.+.|++++|
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 2334556799999999999998863 22566778889999999999999
Q ss_pred HHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH---------HHHHHHHHHHHhcCChHHHH
Q 037911 365 KSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISR---------DIYDYLIVALCQDNRPFAAT 435 (609)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~~ll~~~~~~~~~~~a~ 435 (609)
...++++.+.. +.+...+..+...+...++.++|+..++.+......+.. ..+......+...|+.++|.
T Consensus 515 ~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~ 593 (1157)
T PRK11447 515 DALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAE 593 (1157)
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHH
Confidence 99999998753 224555555566678899999999999876543222221 12334567788999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCC
Q 037911 436 SLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESG 515 (609)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 515 (609)
.+++. .+.+...+..+...+.+.|++++|+..|++..+... .+...+..++..+...|++++|++.++.+.+..
T Consensus 594 ~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P-~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~ 667 (1157)
T PRK11447 594 ALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP-GNADARLGLIEVDIAQGDLAAARAQLAKLPATA 667 (1157)
T ss_pred HHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence 98872 345667778899999999999999999999998653 467888999999999999999999999887642
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-C----ChhcHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCC
Q 037911 516 MLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQI-Y----DTESYNAVFNMFAEDGDLSKLMELQKRFLR-LGFAP 588 (609)
Q Consensus 516 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~g~~p 588 (609)
+.+..++..+..++...|++++|.++++.+...... + +...+..+...+...|++++|++.|++.+. .|+.|
T Consensus 668 -p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 668 -NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred -CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 334566777889999999999999999999875321 1 123566678889999999999999999874 34443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-22 Score=190.84 Aligned_cols=435 Identities=14% Similarity=0.150 Sum_probs=362.1
Q ss_pred cCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHH
Q 037911 102 CQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYV 181 (609)
Q Consensus 102 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 181 (609)
..||+.+|.+..+.+..+ .+-+......+-.++.+..+++.....-...++. .|.-.+.|..+.. .+-
T Consensus 60 q~gd~~~a~~h~nmv~~~--d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~---~~q~ae~ysn~aN-------~~k 127 (966)
T KOG4626|consen 60 QGGDYKQAEKHCNMVGQE--DPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK---NPQGAEAYSNLAN-------ILK 127 (966)
T ss_pred hccCHHHHHHHHhHhhcc--CCCcccceeeehhhhhcccchhhhhhhhhhhhhc---cchHHHHHHHHHH-------HHH
Confidence 457999999999988753 2334555566677778888888777666566544 5677889999988 899
Q ss_pred HhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHH-HHHHHHHHcCChHHHH
Q 037911 182 KVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFN-ILTHVFCKNGDVDKVN 260 (609)
Q Consensus 182 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~ 260 (609)
..|++++|+..++.+++.. +..+..|-.+..++...|+.+.|.+.|.+..+ +.|+..... .+...+-..|++++|.
T Consensus 128 erg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred HhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhH
Confidence 9999999999999999975 55788999999999999999999999999888 457665544 4555566689999999
Q ss_pred HHHHHHHHcCCCCC-HHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037911 261 GFLEKIEEEGFDPD-LVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHR 339 (609)
Q Consensus 261 ~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 339 (609)
.-+.+.++. .|. .+.|..|...+-.+|+...|++.|++..+.++. -...|-.|...|...+.+++|...+.+....
T Consensus 205 ~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l 281 (966)
T KOG4626|consen 205 ACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYLRALNL 281 (966)
T ss_pred HHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhc
Confidence 999988876 444 567999999999999999999999999886443 3578899999999999999999999998875
Q ss_pred CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH
Q 037911 340 GLSPD-IVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPD-TFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDI 417 (609)
Q Consensus 340 g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 417 (609)
.|+ ...+..+...|...|.++-|++.+++.++. .|+ ...|+.|..++-..|+..+|...+.+..... +--...
T Consensus 282 --rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hada 356 (966)
T KOG4626|consen 282 --RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADA 356 (966)
T ss_pred --CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHH
Confidence 444 677888888999999999999999999976 555 4679999999999999999999999998875 335778
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHh
Q 037911 418 YDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSL-STYRALICCFC 496 (609)
Q Consensus 418 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~li~~~~ 496 (609)
.+.+...+...|.+++|..++....+.. +--....+.|...|-++|++++|+..|++.+. ++|+. .+|+.+...|.
T Consensus 357 m~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~k 433 (966)
T KOG4626|consen 357 MNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYK 433 (966)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHH
Confidence 8899999999999999999999986653 23456788999999999999999999999987 55775 57999999999
Q ss_pred cCCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCh-hcHHHHHHHHH
Q 037911 497 GIGRSGEAVSLMDEMLESGMLPD-SQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDT-ESYNAVFNMFA 566 (609)
Q Consensus 497 ~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~ 566 (609)
..|+.+.|++.+.+++. +.|. ....+.|...|...|++.+|+.-++...+. .||. ..|..++.++-
T Consensus 434 e~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 434 EMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPDFPDAYCNLLHCLQ 501 (966)
T ss_pred HhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCCCchhhhHHHHHHH
Confidence 99999999999999996 4554 456889999999999999999999999977 6765 46666665543
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.1e-22 Score=188.31 Aligned_cols=433 Identities=15% Similarity=0.121 Sum_probs=354.3
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHH
Q 037911 129 YCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSC 208 (609)
Q Consensus 129 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 208 (609)
...+++-+.+.|+|.+|++.....-.. .|........+-. .+.+..+.+.....-....+.. +.-.++|
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~---d~t~~~~llll~a-------i~~q~~r~d~s~a~~~~a~r~~-~q~ae~y 119 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQE---DPTNTERLLLLSA-------IFFQGSRLDKSSAGSLLAIRKN-PQGAEAY 119 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhcc---CCCcccceeeehh-------hhhcccchhhhhhhhhhhhhcc-chHHHHH
Confidence 566788888999999999987655543 3333333333333 5666667776665555444432 5567799
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhH-HHHHHHHHh
Q 037911 209 NFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTY-NTLISSYCK 287 (609)
Q Consensus 209 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~ 287 (609)
..+.+.+-..|++++|+..|+.+.+.. +-....|..+..++...|+.+.|.+.|.+..+. .|+.... ..+...+-.
T Consensus 120 sn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka 196 (966)
T KOG4626|consen 120 SNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKA 196 (966)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHh
Confidence 999999999999999999999999853 335788999999999999999999999999876 4665543 334455566
Q ss_pred cCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCChHHHHH
Q 037911 288 KGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPD-IVSYNTLIFAYCKEGKMQESKS 366 (609)
Q Consensus 288 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~ 366 (609)
.|++++|..-|.+..+.... -...|+.|...+-..|++..|++.|++..+. .|+ ...|..|...|...+.+++|..
T Consensus 197 ~Grl~ea~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs 273 (966)
T KOG4626|consen 197 EGRLEEAKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVS 273 (966)
T ss_pred hcccchhHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHH
Confidence 89999999999888876432 3578999999999999999999999999875 555 4678899999999999999999
Q ss_pred HHHHHHHCCCccC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037911 367 LLYEMMGNGIYPD-TFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDG 445 (609)
Q Consensus 367 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 445 (609)
.+.+.... .|+ ...+..+...|...|.++-|+..+++..+..+ -=+..|+.+..++-..|+..+|...+.+.....
T Consensus 274 ~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P-~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~ 350 (966)
T KOG4626|consen 274 CYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQP-NFPDAYNNLANALKDKGSVTEAVDCYNKALRLC 350 (966)
T ss_pred HHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCC-CchHHHhHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 99998865 444 56677888889999999999999999998752 247899999999999999999999999987654
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCC-HHHH
Q 037911 446 YVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSL-STYRALICCFCGIGRSGEAVSLMDEMLESGMLPD-SQIC 523 (609)
Q Consensus 446 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~ 523 (609)
+......+.|...|...|.+++|..+|....+. .|.. ..++.|...|.+.|++++|+..|+++++ +.|+ ...|
T Consensus 351 -p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~ 425 (966)
T KOG4626|consen 351 -PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADAL 425 (966)
T ss_pred -CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHH
Confidence 446778899999999999999999999998874 3554 5689999999999999999999999995 6776 4578
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCh-hcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 037911 524 RVLINGYCMEKDVNKAEALLGFFAKKFQIYDT-ESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNN 590 (609)
Q Consensus 524 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 590 (609)
+.+...|-..|+.+.|...+.+.+.. .|.. ...+.|...|...|+..+|++-|++.++ ++||.
T Consensus 426 ~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDf 489 (966)
T KOG4626|consen 426 SNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDF 489 (966)
T ss_pred HhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCC
Confidence 99999999999999999999998865 4443 6789999999999999999999999994 57774
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3e-21 Score=192.45 Aligned_cols=305 Identities=15% Similarity=0.154 Sum_probs=173.3
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCC---HhhHHHHHHHHHhcCC
Q 037911 249 VFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPD---LVTYTTLMNGLCKEGK 325 (609)
Q Consensus 249 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~ll~~~~~~~~ 325 (609)
.+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...+.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3445555666666666655542 12334555555555555555555555555554321111 1234444555555555
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 037911 326 VREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVE 405 (609)
Q Consensus 326 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 405 (609)
+++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+....
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----------------------- 178 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE----------------------- 178 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH-----------------------
Confidence 555555555554431 22344455555555555555555555555544321111000
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 037911 406 LQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSL 485 (609)
Q Consensus 406 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 485 (609)
....+..+...+...|++++|...++++.... +.+...+..+...+.+.|++++|.++++++.+.+.....
T Consensus 179 --------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 249 (389)
T PRK11788 179 --------IAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLS 249 (389)
T ss_pred --------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHH
Confidence 01123334445555566666666666554432 233455666667777777777777777777764322223
Q ss_pred HHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHH
Q 037911 486 STYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMF 565 (609)
Q Consensus 486 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 565 (609)
.++..++.+|...|++++|...++++.+. .|+...+..++..+.+.|++++|.++++++.+. .|+...+..++..+
T Consensus 250 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~ 325 (389)
T PRK11788 250 EVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYH 325 (389)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHh
Confidence 45667777777777777777777777754 455556677777777777777787777777765 56776777766665
Q ss_pred Hh---cCCHHHHHHHHHHHHHcCCCCChh
Q 037911 566 AE---DGDLSKLMELQKRFLRLGFAPNNL 591 (609)
Q Consensus 566 ~~---~g~~~~A~~~~~~m~~~g~~p~~~ 591 (609)
.. .|+.++++.++++|+++++.|++.
T Consensus 326 ~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 326 LAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 54 457777777777777776666654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-18 Score=184.48 Aligned_cols=491 Identities=12% Similarity=-0.009 Sum_probs=268.5
Q ss_pred ccCCChhhhhhhhhcCcCCCCChHHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHH
Q 037911 70 KKGDSHLTLLQNDLKPLLPHLGAHEISRVLLRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKML 149 (609)
Q Consensus 70 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 149 (609)
++..+++..++..++..|.+......+..+....|++++|+..++.+.+. .+.|...+..+..+ +++++|..++
T Consensus 58 Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i----~~~~kA~~~y 131 (987)
T PRK09782 58 NDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI----PVEVKSVTTV 131 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh----ccChhHHHHH
Confidence 34557778888889988888766666667777889999999999999863 22345544444322 9999999999
Q ss_pred HHHHHhhCCCCCcHHhHHHHhhcc-ccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCChHHHHHH
Q 037911 150 CELVELVKDCPHSVDVFQDLISCT-EDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFL-LNGLLKLNCIDQCWQV 227 (609)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~ 227 (609)
+++++. .|.+.+++..+.... ......|.+. ++|.+.++ .......|+..+.... ...|.+.|++++|+++
T Consensus 132 e~l~~~---~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~l 204 (987)
T PRK09782 132 EELLAQ---QKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTL 204 (987)
T ss_pred HHHHHh---CCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHH
Confidence 999987 445556555554300 0000014444 33333333 2222223334444443 6777777777777777
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCc
Q 037911 228 YEEMGRIGICPNTHTFNILTHVFCK-NGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNV 306 (609)
Q Consensus 228 ~~~m~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 306 (609)
++++.+.+ +.+......|..+|.. .++ +++..+++. ..+.+...+..+...|.+.|+.++|.++++++.....
T Consensus 205 L~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~ 278 (987)
T PRK09782 205 YNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFT 278 (987)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCccccc
Confidence 77777664 3334445555556665 255 555555443 1224566666666677777777777666666533211
Q ss_pred c-CCHhhH------------------------------------------------------------------------
Q 037911 307 L-PDLVTY------------------------------------------------------------------------ 313 (609)
Q Consensus 307 ~-p~~~~~------------------------------------------------------------------------ 313 (609)
. |...+|
T Consensus 279 ~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 358 (987)
T PRK09782 279 TDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNK 358 (987)
T ss_pred CCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCch
Confidence 0 110000
Q ss_pred ---------------------HHHHHHHHhcCCHHHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHHc------------
Q 037911 314 ---------------------TTLMNGLCKEGKVREAHQLFHRMVHR-G-LSPDIVSYNTLIFAYCKE------------ 358 (609)
Q Consensus 314 ---------------------~~ll~~~~~~~~~~~a~~~~~~m~~~-g-~~p~~~~~~~li~~~~~~------------ 358 (609)
..+.-...+.|+.++|.++++..... + -.++......++..|.+.
T Consensus 359 ~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l 438 (987)
T PRK09782 359 AEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAIL 438 (987)
T ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHh
Confidence 00001122345555555555554431 0 111112222333333332
Q ss_pred ---------------------------------------------------CChHHHHHHHHHHHHCCCccCHHHHHHHH
Q 037911 359 ---------------------------------------------------GKMQESKSLLYEMMGNGIYPDTFTCQIIV 387 (609)
Q Consensus 359 ---------------------------------------------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 387 (609)
++.++|...+.+.... .|+......+.
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~--~Pd~~~~L~lA 516 (987)
T PRK09782 439 SKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQR--QPDAWQHRAVA 516 (987)
T ss_pred ccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHh--CCchHHHHHHH
Confidence 3444455544444433 23333222233
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 037911 388 QGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVA 467 (609)
Q Consensus 388 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 467 (609)
..+...|++++|+..++++... +|+...+..+..++.+.|++++|...++...... +.....+..+.....+.|+++
T Consensus 517 ~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~ 593 (987)
T PRK09782 517 YQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPE 593 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHH
Confidence 3334566666666666665443 2233334444555566666666666666665443 222222333333333446666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 037911 468 DALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFA 547 (609)
Q Consensus 468 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 547 (609)
+|...+++..+.. |+...+..+..++.+.|++++|+..++++.... +.+...+..+..++...|++++|+..++...
T Consensus 594 eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL 670 (987)
T PRK09782 594 LALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAH 670 (987)
T ss_pred HHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6666666666543 455666666666667777777777777766542 3344555666666666777777777776666
Q ss_pred HcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 037911 548 KKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNN 590 (609)
Q Consensus 548 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 590 (609)
+.. +-+...+..+..++...|++++|...+++.++. .|+.
T Consensus 671 ~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~ 710 (987)
T PRK09782 671 KGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQ 710 (987)
T ss_pred HhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCC
Confidence 542 223456666666777777777777777776633 4444
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.7e-19 Score=184.68 Aligned_cols=430 Identities=13% Similarity=-0.009 Sum_probs=238.4
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHH
Q 037911 128 NYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVS 207 (609)
Q Consensus 128 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 207 (609)
.+...+..+.+.|++++|+..|+++++. .| +...|..+.. +|.+.|++++|++.++++++.+ +.+..+
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~---~p-~~~~~~n~a~-------~~~~l~~~~~Ai~~~~~al~l~-p~~~~a 196 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC---KP-DPVYYSNRAA-------CHNALGDWEKVVEDTTAALELD-PDYSKA 196 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc---CC-chHHHHHHHH-------HHHHhCCHHHHHHHHHHHHHcC-CCCHHH
Confidence 3455677777788888888888887765 22 3455666666 6778888888888888887754 445667
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 037911 208 CNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCK 287 (609)
Q Consensus 208 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 287 (609)
|..+..++...|++++|+.-|......+- .+......++..+.. ..+........+.. +.+...+..+.. |..
T Consensus 197 ~~~~a~a~~~lg~~~eA~~~~~~~~~~~~-~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~ 269 (615)
T TIGR00990 197 LNRRANAYDGLGKYADALLDLTASCIIDG-FRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQ 269 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHH
Confidence 77777888888888888777766544321 111111112211111 12222222222221 112222222222 211
Q ss_pred cCCHhHHHHHHHHHhhCCccCC-HhhHHHHHHH---HHhcCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCCh
Q 037911 288 KGRLNDAFYLYRIMYRRNVLPD-LVTYTTLMNG---LCKEGKVREAHQLFHRMVHRG-LSP-DIVSYNTLIFAYCKEGKM 361 (609)
Q Consensus 288 ~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~---~~~~~~~~~a~~~~~~m~~~g-~~p-~~~~~~~li~~~~~~g~~ 361 (609)
....+....-+.+..+. .+. ...+..+... ....+++++|.+.|+...+.+ ..| +...+..+...+...|++
T Consensus 270 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~ 347 (615)
T TIGR00990 270 SFRPKPRPAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKH 347 (615)
T ss_pred HccCCcchhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCH
Confidence 11111111111111111 011 0111111111 122356677777777776653 122 334556666666667777
Q ss_pred HHHHHHHHHHHHCCCccC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 037911 362 QESKSLLYEMMGNGIYPD-TFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLER 440 (609)
Q Consensus 362 ~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 440 (609)
++|...+++.++. .|+ ...|..+...+...|++++|+..++++.+.. +-+...+..+...+...|++++|...+++
T Consensus 348 ~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~k 424 (615)
T TIGR00990 348 LEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQK 424 (615)
T ss_pred HHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7777777776654 233 4456666666777777777777777766654 23456666667777777777777777777
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCH
Q 037911 441 IGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDS 520 (609)
Q Consensus 441 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 520 (609)
..... +.+...+..+...+.+.|++++|+..|++..+.. +.+...++.+...+...|++++|++.|+++++..-..+.
T Consensus 425 al~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~ 502 (615)
T TIGR00990 425 SIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKP 502 (615)
T ss_pred HHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcccc
Confidence 65543 3345566666667777777777777777766542 123556666667777777777777777776653211011
Q ss_pred H------HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037911 521 Q------ICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRL 584 (609)
Q Consensus 521 ~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 584 (609)
. .++..+..+...|++++|.+++++..+.. +.+...+..++..+...|++++|+++|++..+.
T Consensus 503 ~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 503 MYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred ccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 0 11112222333577777777777766542 222345666777777777777777777776644
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.8e-18 Score=178.92 Aligned_cols=474 Identities=11% Similarity=0.015 Sum_probs=312.9
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhc
Q 037911 93 HEISRVLLRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISC 172 (609)
Q Consensus 93 ~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 172 (609)
..+.+.+....|+++.|+..|+.+.+. .+.+...+..++..|...|++++|+..+++.++. .|.+...+..+.
T Consensus 47 ~f~~a~~~~~~Gd~~~A~~~l~~Al~~--dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l---dP~n~~~~~~La-- 119 (987)
T PRK09782 47 RLDKALKAQKNNDEATAIREFEYIHQQ--VPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR---HPGDARLERSLA-- 119 (987)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CcccHHHHHHHH--
Confidence 345555666679999999999999973 2346889999999999999999999999999975 445555555443
Q ss_pred cccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--------HHhcCChHHHHHHHHHHhhCCCCCCHHHHH
Q 037911 173 TEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNG--------LLKLNCIDQCWQVYEEMGRIGICPNTHTFN 244 (609)
Q Consensus 173 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~--------~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 244 (609)
.+ +++++|..+++++.+.. +-+..++..+... |.+. ++|.+.++ .......|+..+..
T Consensus 120 ------~i---~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~ 185 (987)
T PRK09782 120 ------AI---PVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLR 185 (987)
T ss_pred ------Hh---ccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHH
Confidence 22 99999999999999865 4455566655555 5554 55555555 33322334455555
Q ss_pred HH-HHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh-cCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHh
Q 037911 245 IL-THVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCK-KGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCK 322 (609)
Q Consensus 245 ~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 322 (609)
.. ...|.+.|++++|++++.++.+.+ ..+......+..+|.. .++ +++..+++.. +.-+...+..+...+.+
T Consensus 186 L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~ 259 (987)
T PRK09782 186 TDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAY 259 (987)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHH
Confidence 55 899999999999999999999986 3355557777778887 366 8888886542 23478889999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHH------------------------------HHHHH------------------
Q 037911 323 EGKVREAHQLFHRMVHRGLS-PDIVSY------------------------------NTLIF------------------ 353 (609)
Q Consensus 323 ~~~~~~a~~~~~~m~~~g~~-p~~~~~------------------------------~~li~------------------ 353 (609)
.|+.++|.++++++...-.. |+..++ -.++.
T Consensus 260 ~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (987)
T PRK09782 260 RGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATL 339 (987)
T ss_pred CCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 99999999999887643111 111111 00011
Q ss_pred ---------------------------------------------HHHHcCChHHHHHHHHHHHHC-C-Ccc--------
Q 037911 354 ---------------------------------------------AYCKEGKMQESKSLLYEMMGN-G-IYP-------- 378 (609)
Q Consensus 354 ---------------------------------------------~~~~~g~~~~A~~~~~~~~~~-~-~~~-------- 378 (609)
...+.|+.++|.++++..... + ..+
T Consensus 340 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l 419 (987)
T PRK09782 340 PANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARL 419 (987)
T ss_pred CcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHH
Confidence 112345555555555544331 0 011
Q ss_pred --------------------------------------------------------CHHHHHHHHHHHHccCCHHHHHHH
Q 037911 379 --------------------------------------------------------DTFTCQIIVQGYGKEGRLLSALNL 402 (609)
Q Consensus 379 --------------------------------------------------------~~~~~~~l~~~~~~~~~~~~A~~~ 402 (609)
+...|..+..++.. ++.++|+..
T Consensus 420 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a 498 (987)
T PRK09782 420 ASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYA 498 (987)
T ss_pred HHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHH
Confidence 11222223333332 445556665
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037911 403 VVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIK 482 (609)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 482 (609)
+.+..... |+......+...+...|++++|...++++... +|+...+..+...+.+.|+.++|..++++..+.+.
T Consensus 499 ~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P- 573 (987)
T PRK09782 499 WLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGL- 573 (987)
T ss_pred HHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-
Confidence 55555442 34333333344455777888888877776443 33444455666777778888888888888776542
Q ss_pred CCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHH
Q 037911 483 PSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVF 562 (609)
Q Consensus 483 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 562 (609)
.+...+..+...+...|++++|...+++.++. .|+...+..+..++.+.|++++|...++...... +.+...++.+.
T Consensus 574 ~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG 650 (987)
T PRK09782 574 GDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALG 650 (987)
T ss_pred ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 22233333334444568888888888888853 5677788888888888899999998888888763 33446778888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChh-hHHHHHHHHhccc
Q 037911 563 NMFAEDGDLSKLMELQKRFLRLGFAPNNL-TCKYMIHSLWKGM 604 (609)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~ 604 (609)
.++...|++++|++.+++.++. .|+.. .+..+-..+.+.|
T Consensus 651 ~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lG 691 (987)
T PRK09782 651 YALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLD 691 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCC
Confidence 8888888999999888888854 55543 3333334444333
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-20 Score=186.12 Aligned_cols=300 Identities=15% Similarity=0.106 Sum_probs=164.1
Q ss_pred HHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHHcCCh
Q 037911 180 YVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPN---THTFNILTHVFCKNGDV 256 (609)
Q Consensus 180 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~g~~ 256 (609)
+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 445555555555555555543 23444555555555555555555555555554321111 13445555555566666
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCH----hhHHHHHHHHHhcCCHHHHHHH
Q 037911 257 DKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDL----VTYTTLMNGLCKEGKVREAHQL 332 (609)
Q Consensus 257 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~ 332 (609)
++|..+|+++.+.. +.+..+++.++..+.+.|++++|.+.++.+.+.+..++. ..+..+...+.+.|++++|...
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 66666666655432 234455555666666666666666666665554332211 1234455555666666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 037911 333 FHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVS 412 (609)
Q Consensus 333 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 412 (609)
|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......++..++.+|.+.|++++|...++++.+..
T Consensus 203 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-- 279 (389)
T PRK11788 203 LKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY-- 279 (389)
T ss_pred HHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 66665542 223445555556666666666666666666654222123445566666666666666666666666553
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHH
Q 037911 413 ISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCK---CDSVADALLLKDEMVDRNIKPSLS 486 (609)
Q Consensus 413 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~ 486 (609)
|+...+..++..+.+.|++++|...++++... .|+...++.++..+.. .|+.+++..+++++.+.+++|++.
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 34444456666666666666666666666443 3566666666655543 346666777777666655444443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-18 Score=172.28 Aligned_cols=512 Identities=12% Similarity=0.070 Sum_probs=382.0
Q ss_pred ccCCChhhhhhhhhcCcCCCCChHHHHHHHHhcCC---ChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHH
Q 037911 70 KKGDSHLTLLQNDLKPLLPHLGAHEISRVLLRCQS---DSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAM 146 (609)
Q Consensus 70 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~---~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 146 (609)
.....++..+++.+...|..+++...++++..... .+..++..+..+-.. .+.++...+.|.+-+.-.|++..++
T Consensus 213 ~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~--n~~nP~~l~~LAn~fyfK~dy~~v~ 290 (1018)
T KOG2002|consen 213 GMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKE--NNENPVALNHLANHFYFKKDYERVW 290 (1018)
T ss_pred cchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhh--cCCCcHHHHHHHHHHhhcccHHHHH
Confidence 34445666677777777766666667776654443 455788888777754 3457778889999999999999999
Q ss_pred HHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 037911 147 KMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQ 226 (609)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 226 (609)
.+.+.++......+.-..-|-.+.+ +|...|++++|...|.+..+..-.--+..+--|...+.+.|+.+.+..
T Consensus 291 ~la~~ai~~t~~~~~~aes~Y~~gR-------s~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~ 363 (1018)
T KOG2002|consen 291 HLAEHAIKNTENKSIKAESFYQLGR-------SYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKF 363 (1018)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHH-------HHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHH
Confidence 9999998763333344455667777 999999999999999999875422224455668899999999999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHcC----ChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHh
Q 037911 227 VYEEMGRIGICPNTHTFNILTHVFCKNG----DVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMY 302 (609)
Q Consensus 227 ~~~~m~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 302 (609)
.|+.+.+. .+.+..+..+|...|...+ ..++|..++.+..+.- +.|...|-.+...+-...- ..++..|....
T Consensus 364 ~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~-~~sL~~~~~A~ 440 (1018)
T KOG2002|consen 364 CFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDP-WASLDAYGNAL 440 (1018)
T ss_pred HHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcCh-HHHHHHHHHHH
Confidence 99999875 3455677778887787775 5677888888877663 4467778777777665544 44477776554
Q ss_pred ----hCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHHHcCChHHHHHHHH
Q 037911 303 ----RRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHR---GLSPDI------VSYNTLIFAYCKEGKMQESKSLLY 369 (609)
Q Consensus 303 ----~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---g~~p~~------~~~~~li~~~~~~g~~~~A~~~~~ 369 (609)
..+..+.....|.+...+...|++++|...|...... ...+|. .+-..+...+-..++.+.|.+.|.
T Consensus 441 d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk 520 (1018)
T KOG2002|consen 441 DILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYK 520 (1018)
T ss_pred HHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 3455577889999999999999999999999998765 223333 233345666667889999999999
Q ss_pred HHHHCCCccCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCC
Q 037911 370 EMMGNGIYPDTF-TCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQD-GYV 447 (609)
Q Consensus 370 ~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~ 447 (609)
.+++. .|..+ .|..++......+...+|...++...+.+ ..++..+..+...+.....+..|.+-+..+... ...
T Consensus 521 ~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~ 597 (1018)
T KOG2002|consen 521 SILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTK 597 (1018)
T ss_pred HHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccC
Confidence 99976 45543 35555444455678889999999988765 446667777777888888878888877766222 223
Q ss_pred CCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCC
Q 037911 448 PSLEIYNELMESLCK------------CDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESG 515 (609)
Q Consensus 448 ~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 515 (609)
+|..+.-.|.+.|.+ .+..++|+.+|.+++.... -|..+-+-+.-+++..|++++|..+|.+..+..
T Consensus 598 ~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dp-kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~ 676 (1018)
T KOG2002|consen 598 TDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDP-KNMYAANGIGIVLAEKGRFSEARDIFSQVREAT 676 (1018)
T ss_pred CchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCc-chhhhccchhhhhhhccCchHHHHHHHHHHHHH
Confidence 677777677765543 2457889999999887643 466777888888999999999999999998864
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 037911 516 MLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQ-IYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCK 594 (609)
Q Consensus 516 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 594 (609)
.-...+|..+.++|..+|++-.|+++|+...+... .-++.+...|.+++.+.|++.+|.+.....+.....-..+.||
T Consensus 677 -~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN 755 (1018)
T KOG2002|consen 677 -SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFN 755 (1018)
T ss_pred -hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhH
Confidence 33556788999999999999999999998887766 3456788999999999999999999999998664444455566
Q ss_pred HHHH
Q 037911 595 YMIH 598 (609)
Q Consensus 595 ~ll~ 598 (609)
..+.
T Consensus 756 ~a~v 759 (1018)
T KOG2002|consen 756 LALV 759 (1018)
T ss_pred HHHH
Confidence 5543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.89 E-value=4e-18 Score=178.80 Aligned_cols=425 Identities=13% Similarity=-0.001 Sum_probs=300.4
Q ss_pred HHHHhcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccc
Q 037911 97 RVLLRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDC 176 (609)
Q Consensus 97 ~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (609)
+......++++.|+..|+.++. ..|++..|..+..+|.+.|++++|+..++.+++. .|.....+..+..
T Consensus 134 G~~~~~~~~~~~Ai~~y~~al~---~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l---~p~~~~a~~~~a~----- 202 (615)
T TIGR00990 134 GNKAYRNKDFNKAIKLYSKAIE---CKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL---DPDYSKALNRRAN----- 202 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---CCCCHHHHHHHHH-----
Confidence 4455667899999999999986 4677889999999999999999999999999976 4667788888888
Q ss_pred hhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCh
Q 037911 177 NWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDV 256 (609)
Q Consensus 177 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 256 (609)
+|...|++++|+..|..+...+...+. ....++..+.. ..+.....+..+.. +.+...+..+.. +......
T Consensus 203 --a~~~lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~ 273 (615)
T TIGR00990 203 --AYDGLGKYADALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRP 273 (615)
T ss_pred --HHHHcCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccC
Confidence 899999999999999877654322222 22222222222 12222233332221 222222222222 2222121
Q ss_pred HHHHHHHHHHHHcCCCCC-HHhHHHHHHH---HHhcCCHhHHHHHHHHHhhCC-ccC-CHhhHHHHHHHHHhcCCHHHHH
Q 037911 257 DKVNGFLEKIEEEGFDPD-LVTYNTLISS---YCKKGRLNDAFYLYRIMYRRN-VLP-DLVTYTTLMNGLCKEGKVREAH 330 (609)
Q Consensus 257 ~~a~~~~~~~~~~~~~~~-~~~~~~li~~---~~~~g~~~~a~~~~~~~~~~~-~~p-~~~~~~~ll~~~~~~~~~~~a~ 330 (609)
+....-+....+. .+. ...+..+... ....+++++|++.|++..+.+ ..| ....|..+...+...|++++|.
T Consensus 274 ~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~ 351 (615)
T TIGR00990 274 KPRPAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEAL 351 (615)
T ss_pred Ccchhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHH
Confidence 1221112211111 111 1111111111 123468999999999998764 223 4556788888888999999999
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 037911 331 QLFHRMVHRGLSPD-IVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRF 409 (609)
Q Consensus 331 ~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 409 (609)
..+++..+. .|+ ...|..+...+...|++++|...|+++++.. +.+...|..+...+...|++++|+..|++..+.
T Consensus 352 ~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l 428 (615)
T TIGR00990 352 ADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL 428 (615)
T ss_pred HHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 999999876 444 5678888888999999999999999998763 335788889999999999999999999999887
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---
Q 037911 410 GVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLS--- 486 (609)
Q Consensus 410 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--- 486 (609)
.. .+...+..+..++.+.|++++|...+++..... +.+...++.+...+...|++++|++.|++..+.....+..
T Consensus 429 ~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~ 506 (615)
T TIGR00990 429 DP-DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMN 506 (615)
T ss_pred Cc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcccccccc
Confidence 53 356777788889999999999999999987653 4567889999999999999999999999988754221111
Q ss_pred ---HHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 037911 487 ---TYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKK 549 (609)
Q Consensus 487 ---~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 549 (609)
.++..+..+...|++++|.++++++.+.. +.+...+..++..+.+.|++++|.+.|++..+.
T Consensus 507 ~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 507 VLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 12222233444699999999999988754 334457888999999999999999999998865
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-17 Score=174.61 Aligned_cols=321 Identities=12% Similarity=0.045 Sum_probs=153.5
Q ss_pred CCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHH
Q 037911 103 QSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVK 182 (609)
Q Consensus 103 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 182 (609)
.|++..|+.+++.+... .+.++..+..++.++...|++++|...++++++. .|.+...+..+.. .+..
T Consensus 55 ~g~~~~A~~l~~~~l~~--~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~---~P~~~~a~~~la~-------~l~~ 122 (656)
T PRK15174 55 KDETDVGLTLLSDRVLT--AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAV---NVCQPEDVLLVAS-------VLLK 122 (656)
T ss_pred cCCcchhHHHhHHHHHh--CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh---CCCChHHHHHHHH-------HHHH
Confidence 35555555555555442 1223334444444444555555555555555543 3334444444444 5555
Q ss_pred hCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 037911 183 VGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGF 262 (609)
Q Consensus 183 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 262 (609)
.|++++|+..++++.+.. +.+...+..+...+...|++++|...++.+.... +.+...+..+ ..+...|++++|...
T Consensus 123 ~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 123 SKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHH
Confidence 555555555555555532 3334455555555555555555555555554322 1112222222 224455555555555
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHH----HHHHHHHHHH
Q 037911 263 LEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVRE----AHQLFHRMVH 338 (609)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~----a~~~~~~m~~ 338 (609)
++.+.+....++...+..+...+...|++++|+..+++..+.+.. +...+..+...+...|++++ |...|++..+
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 555544322222233333344555555555555555555544322 34444455555555555553 4555555554
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 037911 339 RGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIY 418 (609)
Q Consensus 339 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 418 (609)
.. +.+...+..+...+.+.|++++|...+++..+.. +.+...+..+...+.+.|++++|+..++++.+.+.. +...+
T Consensus 279 l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~ 355 (656)
T PRK15174 279 FN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSKWN 355 (656)
T ss_pred hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHH
Confidence 31 1234445555555555555555555555555432 112334444555555555555555555555544211 11222
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHH
Q 037911 419 DYLIVALCQDNRPFAATSLLERIG 442 (609)
Q Consensus 419 ~~ll~~~~~~~~~~~a~~~~~~~~ 442 (609)
..+..++...|++++|...+++..
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al 379 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYI 379 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 223444555555555555555553
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.3e-18 Score=177.76 Aligned_cols=363 Identities=14% Similarity=0.073 Sum_probs=281.3
Q ss_pred HhcCCChhHHHHHHHHhhhcCCCC-CCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchh
Q 037911 100 LRCQSDSVSALTFFNWVKNDLEIK-PTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNW 178 (609)
Q Consensus 100 ~~~~~~~~~A~~~f~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 178 (609)
...+.|++.---+|+...+..... .+..-...++..+.+.|++++|..+++..+.. .|........++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~---~p~~~~~l~~l~~------- 84 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLT---AKNGRDLLRRWVI------- 84 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHh---CCCchhHHHHHhh-------
Confidence 345667877666776665432222 24445566788888999999999999999876 5566666777766
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDK 258 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (609)
+....|++++|+..|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 85 ~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~e 162 (656)
T PRK15174 85 SPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQ 162 (656)
T ss_pred hHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHH
Confidence 7788999999999999999865 5667788888899999999999999999998752 4456778888999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037911 259 VNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVH 338 (609)
Q Consensus 259 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 338 (609)
|...++.+...... +...+..+ ..+...|++++|...++.+.+....++...+..+...+.+.|++++|...++++.+
T Consensus 163 A~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~ 240 (656)
T PRK15174 163 AISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALA 240 (656)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999988766322 33333333 34788999999999999988765444555556667788899999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHH----HHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 037911 339 RGLSPDIVSYNTLIFAYCKEGKMQE----SKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSIS 414 (609)
Q Consensus 339 ~g~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 414 (609)
.. +.+...+..+...+...|++++ |...+++..+.. +.+...+..+...+.+.|++++|+..+++..+... .+
T Consensus 241 ~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~ 317 (656)
T PRK15174 241 RG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DL 317 (656)
T ss_pred cC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CC
Confidence 64 3356778888899999999885 789999988763 23567888889999999999999999999888753 35
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037911 415 RDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRN 480 (609)
Q Consensus 415 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 480 (609)
...+..+..++.+.|++++|...++++..... .+...+..+..++...|+.++|...|++..+..
T Consensus 318 ~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P-~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 318 PYVRAMYARALRQVGQYTAASDEFVQLAREKG-VTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 66777788889999999999999988866532 223334445677888999999999999988754
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.1e-18 Score=169.40 Aligned_cols=514 Identities=12% Similarity=0.057 Sum_probs=325.8
Q ss_pred ChhhhhhhhhcCcCCCCChHHHHHHHHhcCCChhHHHHHHHHhhhc-CCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHH
Q 037911 74 SHLTLLQNDLKPLLPHLGAHEISRVLLRCQSDSVSALTFFNWVKND-LEIKPTSSNYCLIVHILAWNNKFSFAMKMLCEL 152 (609)
Q Consensus 74 ~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 152 (609)
.+...++..++..|++..+-.--..+.-..+|+..|+.+|..+... +...+++ ...+.+.+.+.|+.+.|+..|+.+
T Consensus 148 ~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~--rIgig~Cf~kl~~~~~a~~a~~ra 225 (1018)
T KOG2002|consen 148 DADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADV--RIGIGHCFWKLGMSEKALLAFERA 225 (1018)
T ss_pred HHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCc--cchhhhHHHhccchhhHHHHHHHH
Confidence 3445566778888888776666666777788999999999997753 3344443 334567788999999999999999
Q ss_pred HHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 037911 153 VELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMG 232 (609)
Q Consensus 153 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 232 (609)
++. .|....++..|.... -.+.....+..++..+...-... +-++.+.+.|.+.+.-.|++..++.+...+.
T Consensus 226 lqL---dp~~v~alv~L~~~~----l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai 297 (1018)
T KOG2002|consen 226 LQL---DPTCVSALVALGEVD----LNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAI 297 (1018)
T ss_pred Hhc---ChhhHHHHHHHHHHH----HHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 987 344555544443200 02223345666777777666543 4677778888888888888888888888876
Q ss_pred hCCCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccC
Q 037911 233 RIGIC--PNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDL--VTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLP 308 (609)
Q Consensus 233 ~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 308 (609)
..... .-...|-.+.++|-..|++++|..+|-+..+.. ++. ..+-.+...|.+.|+++.+...|+.+.+....
T Consensus 298 ~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~- 374 (1018)
T KOG2002|consen 298 KNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPN- 374 (1018)
T ss_pred HhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcc-
Confidence 64311 123457778888888888888888888777653 333 34455667888888888888888888765332
Q ss_pred CHhhHHHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH----HHCCCccCH
Q 037911 309 DLVTYTTLMNGLCKEG----KVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEM----MGNGIYPDT 380 (609)
Q Consensus 309 ~~~~~~~ll~~~~~~~----~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~ 380 (609)
+..+...|...|...+ ..+.|..++....+.- +.|...|-.+...+-.. +.-.++..|..+ ...+-.+.+
T Consensus 375 ~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~ 452 (1018)
T KOG2002|consen 375 NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPP 452 (1018)
T ss_pred hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCH
Confidence 4455555655555553 3455555555555442 33455555544444332 222224444332 233333555
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHHhcC----------------------
Q 037911 381 FTCQIIVQGYGKEGRLLSALNLVVELQRF---GVSISR------DIYDYLIVALCQDN---------------------- 429 (609)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~------~~~~~ll~~~~~~~---------------------- 429 (609)
...|.+...+...|++++|...|...... ...++. .+-..+...+-..+
T Consensus 453 E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ 532 (1018)
T KOG2002|consen 453 EVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDA 532 (1018)
T ss_pred HHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHH
Confidence 56666666666666666666666555433 111111 11112222222333
Q ss_pred ------------ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHh
Q 037911 430 ------------RPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDR-NIKPSLSTYRALICCFC 496 (609)
Q Consensus 430 ------------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~li~~~~ 496 (609)
...+|...+....... ..++..+..+...+.+...+..|.+-|....+. ...+|..+.-.|...|.
T Consensus 533 ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~ 611 (1018)
T KOG2002|consen 533 YLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYI 611 (1018)
T ss_pred HHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHH
Confidence 3345555555543322 234444555555666666666666655555433 22256666555655443
Q ss_pred c------------CCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHH
Q 037911 497 G------------IGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNM 564 (609)
Q Consensus 497 ~------------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 564 (609)
+ .+..++|+++|.++++.. +-|...-+.+.-+++..|++.+|..+|.+.++... -+..+|-.+.++
T Consensus 612 ~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~ 689 (1018)
T KOG2002|consen 612 QALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHC 689 (1018)
T ss_pred HHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHH
Confidence 2 245678888888888753 44677778899999999999999999999998742 356789999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCC-CCChhhHHHHHHHHhcccc
Q 037911 565 FAEDGDLSKLMELQKRFLRLGF-APNNLTCKYMIHSLWKGME 605 (609)
Q Consensus 565 ~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~~ 605 (609)
|..+|+|..|+++|+...+.-. .-+......|-.++.+++.
T Consensus 690 ~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~ 731 (1018)
T KOG2002|consen 690 YVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGK 731 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhh
Confidence 9999999999999999886544 4456666777777777664
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.8e-18 Score=181.41 Aligned_cols=422 Identities=12% Similarity=-0.010 Sum_probs=318.0
Q ss_pred CCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC
Q 037911 159 CPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICP 238 (609)
Q Consensus 159 ~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~ 238 (609)
.+.+.......+. .....|+.++|++++++..... +.+...+..+...+...|++++|.++|++..+.. +.
T Consensus 11 ~~~~~~~~~d~~~-------ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~ 81 (765)
T PRK10049 11 SALSNNQIADWLQ-------IALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQ 81 (765)
T ss_pred cCCCHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 3445555555555 7789999999999999998633 5667679999999999999999999999988752 44
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHH
Q 037911 239 NTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMN 318 (609)
Q Consensus 239 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 318 (609)
+...+..++..+...|++++|+..++++.+.. +.+.. +..+..++...|+.++|+..++++.+..+. +...+..+..
T Consensus 82 ~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~ 158 (765)
T PRK10049 82 NDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQ 158 (765)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 56777888889999999999999999998873 33455 888889999999999999999999987654 5666677888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH-----HcCCh---HHHHHHHHHHHHC-CCccCHH-H
Q 037911 319 GLCKEGKVREAHQLFHRMVHRGLSPDI------VSYNTLIFAYC-----KEGKM---QESKSLLYEMMGN-GIYPDTF-T 382 (609)
Q Consensus 319 ~~~~~~~~~~a~~~~~~m~~~g~~p~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~~~~~-~~~~~~~-~ 382 (609)
.+...+..++|++.++.... .|+. .....++.... ..+++ ++|+..++.+.+. ...|+.. .
T Consensus 159 ~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~ 235 (765)
T PRK10049 159 ALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATAD 235 (765)
T ss_pred HHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchH
Confidence 88889999999998886654 2321 11222222222 12233 7788889888854 2223221 1
Q ss_pred H----HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---CHHHHHH
Q 037911 383 C----QIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVP---SLEIYNE 455 (609)
Q Consensus 383 ~----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ 455 (609)
+ ...+..+...|++++|+..|+.+.+.+.+........+..++...|++++|...++++....... .......
T Consensus 236 ~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~ 315 (765)
T PRK10049 236 YQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELAD 315 (765)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHH
Confidence 1 11133456779999999999999987633122233335778999999999999999986543211 1345666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHH
Q 037911 456 LMESLCKCDSVADALLLKDEMVDRNI-----------KPS---LSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQ 521 (609)
Q Consensus 456 l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 521 (609)
+..++...|++++|..+++.+.+... .|+ ...+..+...+...|+.++|+++++++.... +-+..
T Consensus 316 L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~ 394 (765)
T PRK10049 316 LFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQG 394 (765)
T ss_pred HHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHH
Confidence 77788999999999999999987531 123 2345567778889999999999999998753 55677
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-hhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 037911 522 ICRVLINGYCMEKDVNKAEALLGFFAKKFQIYD-TESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMIHSL 600 (609)
Q Consensus 522 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 600 (609)
.+..++..+...|++++|++.+++.... .|+ ...+...+..+...|++++|.++++++++. .|+......+=..+
T Consensus 395 l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 395 LRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQRLARAR 470 (765)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 8899999999999999999999999976 454 567777788899999999999999999965 77777665554443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.5e-18 Score=179.91 Aligned_cols=406 Identities=11% Similarity=0.022 Sum_probs=201.4
Q ss_pred HHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 037911 133 VHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLL 212 (609)
Q Consensus 133 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll 212 (609)
+.+....|+.++|++++.++... .|.....+..+.. .+...|++++|++.++++++.. +.+...+..+.
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~~---~~~~a~~~~~lA~-------~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la 90 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRVH---MQLPARGYAAVAV-------AYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLI 90 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 33444444455554444444421 1223333344433 4444455555555555444432 22333444444
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHh
Q 037911 213 NGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLN 292 (609)
Q Consensus 213 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 292 (609)
..+...|++++|...+++..+. .+.+.. +..+..++...|+.++|+..++++.+.. +.+...+..+..++...|..+
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChH
Confidence 4444445555555555444443 122233 4444444444455555555555544432 112233333444444444444
Q ss_pred HHHHHHHHHhhCCccCCH------hhHHHHHHHHH-----hcCCH---HHHHHHHHHHHHC-CCCCCHH-HH----HHHH
Q 037911 293 DAFYLYRIMYRRNVLPDL------VTYTTLMNGLC-----KEGKV---REAHQLFHRMVHR-GLSPDIV-SY----NTLI 352 (609)
Q Consensus 293 ~a~~~~~~~~~~~~~p~~------~~~~~ll~~~~-----~~~~~---~~a~~~~~~m~~~-g~~p~~~-~~----~~li 352 (609)
+|+..++.... .|+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+ ...+
T Consensus 168 ~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l 244 (765)
T PRK10049 168 PALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRL 244 (765)
T ss_pred HHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHH
Confidence 45444443332 1110 00111111111 11122 4455555555532 1122211 11 0112
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCc-cCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhc
Q 037911 353 FAYCKEGKMQESKSLLYEMMGNGIY-PDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSI---SRDIYDYLIVALCQD 428 (609)
Q Consensus 353 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~ 428 (609)
.++...|++++|+..|+.+.+.+.. |+. ....+...|...|++++|+..|+++.+..... .......+..++...
T Consensus 245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~ 323 (765)
T PRK10049 245 GALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLES 323 (765)
T ss_pred HHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc
Confidence 2334445666666666665554321 221 11223445566666666666666655432111 123344444455666
Q ss_pred CChHHHHHHHHHHHhCC-----------CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037911 429 NRPFAATSLLERIGQDG-----------YVPS---LEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICC 494 (609)
Q Consensus 429 ~~~~~a~~~~~~~~~~~-----------~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 494 (609)
|++++|...++.+.... ..|+ ...+..+...+...|++++|+++++++..... .+...+..+...
T Consensus 324 g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P-~n~~l~~~lA~l 402 (765)
T PRK10049 324 ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAP-GNQGLRIDYASV 402 (765)
T ss_pred ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 66666666666554331 1123 23455666777788888888888888876532 345677777788
Q ss_pred HhcCCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHH
Q 037911 495 FCGIGRSGEAVSLMDEMLESGMLPD-SQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAV 561 (609)
Q Consensus 495 ~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 561 (609)
+...|++++|++.++++.+. .|+ ...+..++..+...|++++|+.+++.+.+. .|+......+
T Consensus 403 ~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~ 466 (765)
T PRK10049 403 LQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQRL 466 (765)
T ss_pred HHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 88888888888888888864 344 556666777788888888888888888876 5555433333
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.2e-17 Score=168.37 Aligned_cols=460 Identities=9% Similarity=0.025 Sum_probs=228.2
Q ss_pred CCChHHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCH--HhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhH
Q 037911 89 HLGAHEISRVLLRCQSDSVSALTFFNWVKNDLEIKPTS--SNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVF 166 (609)
Q Consensus 89 ~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 166 (609)
+........++...+|++..|+..|+.+.+. .|+. ..+ -++.++...|+.++|+..+++.+. ..+.....+
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~---~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~---p~n~~~~~l 105 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKA---GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQS---SMNISSRGL 105 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhh---CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhcc---CCCCCHHHH
Confidence 3334444445555556666666666666542 2221 122 555555666666666666666651 122233333
Q ss_pred HHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 037911 167 QDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNIL 246 (609)
Q Consensus 167 ~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 246 (609)
..+.. .|...|++++|+++|+++.+.. +.+...+..++..+...++.++|++.++++... .|+...+..+
T Consensus 106 lalA~-------ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~l 175 (822)
T PRK14574 106 ASAAR-------AYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTL 175 (822)
T ss_pred HHHHH-------HHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHH
Confidence 33343 4555666666666666666544 333455555555566666666666666666553 3444444333
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCH
Q 037911 247 THVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKV 326 (609)
Q Consensus 247 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 326 (609)
+..+...++..+|++.++++.+.. +-+...+..+..++.+.|-...|+++.++-. +.++-...... +.
T Consensus 176 ayL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p------~~f~~~~~~~l-----~~ 243 (822)
T PRK14574 176 SYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENP------NLVSAEHYRQL-----ER 243 (822)
T ss_pred HHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc------cccCHHHHHHH-----HH
Confidence 333333444444666666666553 2234455555566666666666655544322 11111000000 00
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCccCH-HHH----HHHHHHHHccCCHHHHH
Q 037911 327 REAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGN-GIYPDT-FTC----QIIVQGYGKEGRLLSAL 400 (609)
Q Consensus 327 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~-~~~----~~l~~~~~~~~~~~~A~ 400 (609)
+.|-+. ++.+..++..- - .+.--.+.|+.-++.+... +..|.. ..| .-.+-++...|++.+++
T Consensus 244 ~~~a~~----vr~a~~~~~~~----~---~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi 312 (822)
T PRK14574 244 DAAAEQ----VRMAVLPTRSE----T---ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLI 312 (822)
T ss_pred HHHHHH----Hhhcccccccc----h---hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHH
Confidence 000000 00000000000 0 0000123344444444331 111211 111 11233455566666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037911 401 NLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDG-----YVPSLEIYNELMESLCKCDSVADALLLKDE 475 (609)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 475 (609)
+.++.+...+.+....+-..+..+|...+++++|..+++.+.... ..++......|..++...+++++|..+++.
T Consensus 313 ~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~ 392 (822)
T PRK14574 313 KEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVN 392 (822)
T ss_pred HHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 666666666555555566666666666666666666666663321 122333345566666666666666666666
Q ss_pred HHHCCC-------------CCCHH-HHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 037911 476 MVDRNI-------------KPSLS-TYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEA 541 (609)
Q Consensus 476 ~~~~~~-------------~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 541 (609)
+.+... .||-. .+..++..+...|+..+|++.++++.... +-|......+...+...|.+.+|++
T Consensus 393 ~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~ 471 (822)
T PRK14574 393 YSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQ 471 (822)
T ss_pred HHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 665211 11222 23334455666677777777777776532 4466666667777777777777777
Q ss_pred HHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh
Q 037911 542 LLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLT 592 (609)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 592 (609)
.++..... .+-+..+....+.++...|++++|.++.+.+.+. .|+...
T Consensus 472 ~~k~a~~l-~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~~ 519 (822)
T PRK14574 472 ELKAVESL-APRSLILERAQAETAMALQEWHQMELLTDDVISR--SPEDIP 519 (822)
T ss_pred HHHHHhhh-CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--CCCchh
Confidence 77555543 1223345556666666667777777777666633 455443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.2e-16 Score=160.97 Aligned_cols=445 Identities=10% Similarity=0.042 Sum_probs=263.1
Q ss_pred CCChhhhhhhhhcCcCCCC-ChHHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHH
Q 037911 72 GDSHLTLLQNDLKPLLPHL-GAHEISRVLLRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLC 150 (609)
Q Consensus 72 ~~~~~~~l~~~l~~~~~~~-~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 150 (609)
...++..++..++..|.+. ....++.++ ...|+.++|+.+++.+.. ..+........++..+...|++++|+++|+
T Consensus 50 ~~~Al~~L~qaL~~~P~~~~av~dll~l~-~~~G~~~~A~~~~eka~~--p~n~~~~~llalA~ly~~~gdyd~Aiely~ 126 (822)
T PRK14574 50 TAPVLDYLQEESKAGPLQSGQVDDWLQIA-GWAGRDQEVIDVYERYQS--SMNISSRGLASAARAYRNEKRWDQALALWQ 126 (822)
T ss_pred HHHHHHHHHHHHhhCccchhhHHHHHHHH-HHcCCcHHHHHHHHHhcc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3567777888888777763 222444433 344899999999999882 123344444455778999999999999999
Q ss_pred HHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 037911 151 ELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEE 230 (609)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 230 (609)
++++. .|.+..++..++. .|...++.++|++.++++... .|+...+..++..+...++..+|++.+++
T Consensus 127 kaL~~---dP~n~~~l~gLa~-------~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ek 194 (822)
T PRK14574 127 SSLKK---DPTNPDLISGMIM-------TQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSE 194 (822)
T ss_pred HHHhh---CCCCHHHHHHHHH-------HHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 99976 5566777777777 899999999999999999885 46666665555555556667679999999
Q ss_pred HhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhH--HHHHHHHHhcC---------C---HhHHHH
Q 037911 231 MGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTY--NTLISSYCKKG---------R---LNDAFY 296 (609)
Q Consensus 231 m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g---------~---~~~a~~ 296 (609)
+.+.. +.+...+..+..++.+.|-...|.++..+-... +.+....+ ...+.-.++.+ + .+.|+.
T Consensus 195 ll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala 272 (822)
T PRK14574 195 AVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALA 272 (822)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH
Confidence 99863 446777788889999999999999887763321 11111111 00011111111 1 223333
Q ss_pred HHHHHhhC-CccCCH-h----hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 037911 297 LYRIMYRR-NVLPDL-V----TYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYE 370 (609)
Q Consensus 297 ~~~~~~~~-~~~p~~-~----~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 370 (609)
-++.+... +..|.. . ...-.+-++...|++.++++.|+.+...|.+.-..+-..+.++|...+++++|..+++.
T Consensus 273 ~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~ 352 (822)
T PRK14574 273 DYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSS 352 (822)
T ss_pred HHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 33333321 111211 1 11122334445555555555555555544332223444455555555555555555555
Q ss_pred HHHCC-----CccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037911 371 MMGNG-----IYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDG 445 (609)
Q Consensus 371 ~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 445 (609)
+.... ..++......|.-++...+++++|..+++.+.+. .|.. +..+... ...
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~--~p~~------~~~~~~~--------------~~~ 410 (822)
T PRK14574 353 LYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ--TPYQ------VGVYGLP--------------GKE 410 (822)
T ss_pred HhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCcE------EeccCCC--------------CCC
Confidence 54321 1112222344555555555555555555555442 1100 0000000 000
Q ss_pred CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHH
Q 037911 446 YVPSL-EIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICR 524 (609)
Q Consensus 446 ~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 524 (609)
..||- ..+..++..+...|++.+|++.++++..... -|......+...+...|.+.+|.+.++.+... -+-+..+..
T Consensus 411 pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP-~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l-~P~~~~~~~ 488 (822)
T PRK14574 411 PNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAP-ANQNLRIALASIYLARDLPRKAEQELKAVESL-APRSLILER 488 (822)
T ss_pred CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-CCccHHHHH
Confidence 11222 2334456667777888888888888876532 46667777778888888888888888666643 133445566
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHH
Q 037911 525 VLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYN 559 (609)
Q Consensus 525 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 559 (609)
..+.++...|++.+|..+.+.+.+. .|+.....
T Consensus 489 ~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~~~~ 521 (822)
T PRK14574 489 AQAETAMALQEWHQMELLTDDVISR--SPEDIPSQ 521 (822)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhh--CCCchhHH
Confidence 7777777888888888888877766 45544333
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=9e-16 Score=139.63 Aligned_cols=403 Identities=15% Similarity=0.149 Sum_probs=297.5
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--hH-HHHHHHHHHhhCC-------------------C
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNC--ID-QCWQVYEEMGRIG-------------------I 236 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~-~a~~~~~~m~~~~-------------------~ 236 (609)
-....|.++++.-+|+.|...|++.+...-..|+...+-.+. +- .-++-|-.|...| .
T Consensus 124 kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~ 203 (625)
T KOG4422|consen 124 KMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETL 203 (625)
T ss_pred HHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhc
Confidence 367899999999999999999988888776666654332221 11 1122222222211 2
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHH
Q 037911 237 CPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTL 316 (609)
Q Consensus 237 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 316 (609)
+-+..++.+||.++|+--..+.|.+++++-.....+.+..+||.+|.+-.-. ...+++.+|....+.||..|+|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHH
Confidence 4567899999999999999999999999998887788999999999654322 227899999999999999999999
Q ss_pred HHHHHhcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHH-HHHHHHHHHH----CCCcc----CHHHH
Q 037911 317 MNGLCKEGKVRE----AHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQE-SKSLLYEMMG----NGIYP----DTFTC 383 (609)
Q Consensus 317 l~~~~~~~~~~~----a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~----~~~~~----~~~~~ 383 (609)
+.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++.. +.++| |..-|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 999999998775 56788999999999999999999999999888644 5555555443 22333 34556
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 037911 384 QIIVQGYGKEGRLLSALNLVVELQRFG----VSIS---RDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNEL 456 (609)
Q Consensus 384 ~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 456 (609)
...+..|....+.+-|.++..-+.... +.++ ..-|..+..+.|+....+.-...++.+...-+.|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 777888888889888888776654431 2222 234666777888888888888999999888888999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC-CH--------hH-----HHHHH-------HHHHHCC
Q 037911 457 MESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIG-RS--------GE-----AVSLM-------DEMLESG 515 (609)
Q Consensus 457 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~--------~~-----A~~~~-------~~~~~~~ 515 (609)
+++..-.|.++-.-++|..++..|..-+...-..++..+++.. .. .. |..++ .++.+
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~-- 517 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA-- 517 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh--
Confidence 9999999999999999999998875555555555555555543 11 11 11111 12222
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCChhcHHH---HHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 037911 516 MLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQ-IYDTESYNA---VFNMFAEDGDLSKLMELQKRFLRLGFA 587 (609)
Q Consensus 516 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~---l~~~~~~~g~~~~A~~~~~~m~~~g~~ 587 (609)
..-.....+..+-.+.+.|..++|.+++..+.+.+. .|-....++ +++.-...+....|+..++-|...+..
T Consensus 518 ~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 518 QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch
Confidence 234455677777888999999999999999976665 455566674 445566778899999999999876544
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.3e-15 Score=133.11 Aligned_cols=408 Identities=14% Similarity=0.151 Sum_probs=290.4
Q ss_pred HhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccch--------h--------------HHHHhC
Q 037911 127 SNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCN--------W--------------AYVKVG 184 (609)
Q Consensus 127 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~--------------~~~~~g 184 (609)
++-+.++. +...|...++.-+|+.|... +.+.++.+-..+++.....+ | .-.+.|
T Consensus 117 ~~E~nL~k-mIS~~EvKDs~ilY~~m~~e--~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G 193 (625)
T KOG4422|consen 117 ETENNLLK-MISSREVKDSCILYERMRSE--NVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSG 193 (625)
T ss_pred cchhHHHH-HHhhcccchhHHHHHHHHhc--CCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccc
Confidence 34444443 34467777777777777764 45556665555544211100 0 111333
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 037911 185 LIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLE 264 (609)
Q Consensus 185 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 264 (609)
.+.+ -+|+. .+.+..+|..+|.++|+--..+.|.++|++......+.+..+||.+|.+-.-. ...+++.
T Consensus 194 ~vAd--L~~E~-----~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~ 262 (625)
T KOG4422|consen 194 AVAD--LLFET-----LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVA 262 (625)
T ss_pred cHHH--HHHhh-----cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHH
Confidence 3333 22222 35677899999999999999999999999998877789999999999864433 2278899
Q ss_pred HHHHcCCCCCHHhHHHHHHHHHhcCCHhH----HHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHH-HHHHHHHHHHC
Q 037911 265 KIEEEGFDPDLVTYNTLISSYCKKGRLND----AFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVRE-AHQLFHRMVHR 339 (609)
Q Consensus 265 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~-a~~~~~~m~~~ 339 (609)
+|......||..|+|+++.+..+.|+++. |++++.+|++.|+.|...+|..+|..+++.++..+ |..++.++...
T Consensus 263 EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ 342 (625)
T KOG4422|consen 263 EMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNS 342 (625)
T ss_pred HHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHh
Confidence 99999999999999999999999998765 56788999999999999999999999999988744 45555555432
Q ss_pred ----CCC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC----CccCH---HHHHHHHHHHHccCCHHHHHHHHH
Q 037911 340 ----GLS----PDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNG----IYPDT---FTCQIIVQGYGKEGRLLSALNLVV 404 (609)
Q Consensus 340 ----g~~----p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~ 404 (609)
.+. .|...|...+..|.+..+.+-|.++..-+.... +.|+. .-|..+....|+....+.-...|+
T Consensus 343 ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~ 422 (625)
T KOG4422|consen 343 LTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYE 422 (625)
T ss_pred hccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 245567778888889999998988876655321 23332 336777788899999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CH--------H-----HHH
Q 037911 405 ELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCD-SV--------A-----DAL 470 (609)
Q Consensus 405 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~--------~-----~A~ 470 (609)
.|.-.-.-|...+...++++..-.++++-.-+++..++..|..-+......++..+++.. .. . -|.
T Consensus 423 ~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aa 502 (625)
T KOG4422|consen 423 DLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAA 502 (625)
T ss_pred HhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHH
Confidence 998887788999999999999999998888888888877775544444444444455433 11 0 111
Q ss_pred HHHH-------HHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHccCCHHHH
Q 037911 471 LLKD-------EMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESG----MLPDSQICRVLINGYCMEKDVNKA 539 (609)
Q Consensus 471 ~~~~-------~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~~~~A 539 (609)
.+++ ++.... -.....+...-.+.+.|+.++|.+++..+.+.+ ..|......-+++...+.++...|
T Consensus 503 d~~e~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA 580 (625)
T KOG4422|consen 503 DIKEAYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQA 580 (625)
T ss_pred HHHHHHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHH
Confidence 1221 222223 345566666777889999999999999996543 234444555778888889999999
Q ss_pred HHHHHHHHHcC
Q 037911 540 EALLGFFAKKF 550 (609)
Q Consensus 540 ~~~~~~~~~~~ 550 (609)
..+++.+...+
T Consensus 581 ~~~lQ~a~~~n 591 (625)
T KOG4422|consen 581 IEVLQLASAFN 591 (625)
T ss_pred HHHHHHHHHcC
Confidence 99999997543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2e-15 Score=138.38 Aligned_cols=462 Identities=12% Similarity=0.085 Sum_probs=233.5
Q ss_pred ChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCc--HHhHHHHhhccccchhHHHH
Q 037911 105 DSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHS--VDVFQDLISCTEDCNWAYVK 182 (609)
Q Consensus 105 ~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~ 182 (609)
-..+|+..|+-..+...++..-..-..+.+++.+.++|.+|++++.-++...+....+ ..+.+.+.. .+.+
T Consensus 216 m~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigv-------tfiq 288 (840)
T KOG2003|consen 216 MTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGV-------TFIQ 288 (840)
T ss_pred HHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCe-------eEEe
Confidence 3456888888777655555444444556788888889999999988887664333222 223444444 6888
Q ss_pred hCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHH--------HHHHHHHHH--
Q 037911 183 VGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTF--------NILTHVFCK-- 252 (609)
Q Consensus 183 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~--------~~l~~~~~~-- 252 (609)
.|++++|+..|+...+. .|+..+--.|+-++.-.|+.++..+.|.+|+.....+|..-| ..|+.--.+
T Consensus 289 ~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd 366 (840)
T KOG2003|consen 289 AGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKND 366 (840)
T ss_pred cccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhH
Confidence 99999999999988875 366554433444444568888888889888765433333222 122221111
Q ss_pred -------cCC--hHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhc
Q 037911 253 -------NGD--VDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKE 323 (609)
Q Consensus 253 -------~g~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 323 (609)
.+. .++++-.-.+++.--+.|+-.. -.+-+++.++.-.-..+..+.. ..-...+.+.
T Consensus 367 ~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~------------g~dwcle~lk~s~~~~la~dle--i~ka~~~lk~ 432 (840)
T KOG2003|consen 367 HLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA------------GCDWCLESLKASQHAELAIDLE--INKAGELLKN 432 (840)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHhccccccchhc------------ccHHHHHHHHHhhhhhhhhhhh--hhHHHHHHhc
Confidence 111 1111111111111111111100 0111111111111000000000 0112234566
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--HcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHH
Q 037911 324 GKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYC--KEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALN 401 (609)
Q Consensus 324 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 401 (609)
|+++.|.++++-+.+..-..-...-+.|-..+. .-.++.+|..+-+..+... .-+......-...-...|++++|.+
T Consensus 433 ~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~ 511 (840)
T KOG2003|consen 433 GDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAE 511 (840)
T ss_pred cCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHH
Confidence 666666666666655422211112222211111 1234555555555444321 1122222222223344566666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 037911 402 LVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNI 481 (609)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 481 (609)
.+++....+.......|+. .-.+...|+.++|+..|-++..- +..+..+...+...|....+...|++++-+.... +
T Consensus 512 ~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-i 588 (840)
T KOG2003|consen 512 FYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-I 588 (840)
T ss_pred HHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-C
Confidence 6666665543322223322 22344556666666665554211 1234555555666666666666666666555443 3
Q ss_pred CCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHH
Q 037911 482 KPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAV 561 (609)
Q Consensus 482 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 561 (609)
+.|+..++.|...|-+.|+-..|.+++-+-.. -++-+..+...|...|....-+++|+.+|++..-. .|+..-|..+
T Consensus 589 p~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaali--qp~~~kwqlm 665 (840)
T KOG2003|consen 589 PNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALI--QPNQSKWQLM 665 (840)
T ss_pred CCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc--CccHHHHHHH
Confidence 34555666666666666666666666544433 23445566666666666666666666666655432 6666666655
Q ss_pred HHH-HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 037911 562 FNM-FAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMI 597 (609)
Q Consensus 562 ~~~-~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 597 (609)
+.. +.+.|++.+|+.+|+....+ ++-|.....-|+
T Consensus 666 iasc~rrsgnyqka~d~yk~~hrk-fpedldclkflv 701 (840)
T KOG2003|consen 666 IASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLV 701 (840)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHH
Confidence 533 34566666666666666543 333333333333
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3e-13 Score=134.91 Aligned_cols=470 Identities=15% Similarity=0.111 Sum_probs=326.4
Q ss_pred HhcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhH
Q 037911 100 LRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWA 179 (609)
Q Consensus 100 ~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 179 (609)
+-.+|+.+.|.+++..++++ .+.++..|..|..+|-..|+.+++...+--+... .|.+.+.|..+.. .
T Consensus 149 lfarg~~eeA~~i~~EvIkq--dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL---~p~d~e~W~~lad-------l 216 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQ--DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL---NPKDYELWKRLAD-------L 216 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc---CCCChHHHHHHHH-------H
Confidence 34569999999999999986 3567899999999999999999999987766654 4566677887777 7
Q ss_pred HHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHH----HHHHHHHHHcCC
Q 037911 180 YVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTF----NILTHVFCKNGD 255 (609)
Q Consensus 180 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~----~~l~~~~~~~g~ 255 (609)
..+.|.++.|.-.|.++++.. +++...+---+..|-+.|+...|.+.|.++....-+.|..-+ ...++.+...++
T Consensus 217 s~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~ 295 (895)
T KOG2076|consen 217 SEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNE 295 (895)
T ss_pred HHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhH
Confidence 789999999999999999976 556555556677888999999999999999876322222222 334566777788
Q ss_pred hHHHHHHHHHHHHc-CCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccC--------------------------
Q 037911 256 VDKVNGFLEKIEEE-GFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLP-------------------------- 308 (609)
Q Consensus 256 ~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-------------------------- 308 (609)
-+.|.+.++..... +-..+...++.++..|.+...++.|......+......+
T Consensus 296 ~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s 375 (895)
T KOG2076|consen 296 RERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELS 375 (895)
T ss_pred HHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCC
Confidence 89999988887763 223456678899999999999999999888877622222
Q ss_pred -CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHH
Q 037911 309 -DLVTYTTLMNGLCKEGKVREAHQLFHRMVHRG--LSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQI 385 (609)
Q Consensus 309 -~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 385 (609)
+... --++-++...+..+....+.....+.. ..-+...|.-+..+|...|++.+|+.+|..+......-+...|-.
T Consensus 376 ~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~ 454 (895)
T KOG2076|consen 376 YDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYK 454 (895)
T ss_pred ccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHH
Confidence 2222 122233444555555555555555555 334567788899999999999999999999998755557788999
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH--------hCCCCCCHHHHHHHH
Q 037911 386 IVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIG--------QDGYVPSLEIYNELM 457 (609)
Q Consensus 386 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~ 457 (609)
+..+|...|.+++|.+.|++..... +-+...-..+...+.+.|++++|.+.++.+. ..+..|+....-...
T Consensus 455 ~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~ 533 (895)
T KOG2076|consen 455 LARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRC 533 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHH
Confidence 9999999999999999999998875 3356667778888999999999999998863 223445556666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCC-----CCC-----------------CHHHHHHHHHHHhcCCCHhHHHHHHHHH----
Q 037911 458 ESLCKCDSVADALLLKDEMVDRN-----IKP-----------------SLSTYRALICCFCGIGRSGEAVSLMDEM---- 511 (609)
Q Consensus 458 ~~~~~~g~~~~A~~~~~~~~~~~-----~~p-----------------~~~~~~~li~~~~~~g~~~~A~~~~~~~---- 511 (609)
..+.+.|+.++-+.+-.+|+... +-| ........+.+-.+.++......-...-
T Consensus 534 d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~ 613 (895)
T KOG2076|consen 534 DILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFR 613 (895)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhh
Confidence 77888888887665555554311 101 1112222222222322221111111110
Q ss_pred --HHCCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCCh----hcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037911 512 --LESGMLPDS--QICRVLINGYCMEKDVNKAEALLGFFAKKFQ-IYDT----ESYNAVFNMFAEDGDLSKLMELQKRFL 582 (609)
Q Consensus 512 --~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~ 582 (609)
...++..+. ..+.-++.++++.|++++|..+...+..... ..+. ..-...+.+.+..+++..|...++.|.
T Consensus 614 ~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i 693 (895)
T KOG2076|consen 614 AVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVI 693 (895)
T ss_pred hhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 011222221 2356677888899999999999888776543 1122 123444566778899999999999887
Q ss_pred Hc
Q 037911 583 RL 584 (609)
Q Consensus 583 ~~ 584 (609)
..
T Consensus 694 ~~ 695 (895)
T KOG2076|consen 694 TQ 695 (895)
T ss_pred HH
Confidence 54
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.6e-13 Score=121.73 Aligned_cols=459 Identities=10% Similarity=0.099 Sum_probs=337.4
Q ss_pred hcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHH
Q 037911 101 RCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAY 180 (609)
Q Consensus 101 ~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 180 (609)
..+++.+.|..+|+.++. +...+...|...+..=.+++....|..+++.++... |.....+-..+- .=
T Consensus 84 esq~e~~RARSv~ERALd--vd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l---PRVdqlWyKY~y-------mE 151 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALD--VDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL---PRVDQLWYKYIY-------ME 151 (677)
T ss_pred HhHHHHHHHHHHHHHHHh--cccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc---chHHHHHHHHHH-------HH
Confidence 456788999999999985 345677788888999999999999999999999763 333444433332 34
Q ss_pred HHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 037911 181 VKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVN 260 (609)
Q Consensus 181 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 260 (609)
-..|++..|.++|++..+ ..|+..+|++.++.=.+.+.++.|..+|++.+- +.|++.+|--....-.+.|++..+.
T Consensus 152 E~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHH
Confidence 578999999999999987 479999999999999999999999999999987 4699999999998888999999999
Q ss_pred HHHHHHHHc-CC-CCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccC-CHhhHHHHHHHHHhcCCHHHHHHH-----
Q 037911 261 GFLEKIEEE-GF-DPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLP-DLVTYTTLMNGLCKEGKVREAHQL----- 332 (609)
Q Consensus 261 ~~~~~~~~~-~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~----- 332 (609)
.+|+...+. |- .-+...+.+....-..+..++.|.-+|+-.++.=+.- ....|......--+-|+.......
T Consensus 228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 999988765 21 1122334444444455677888999988887752221 133444444433344554333322
Q ss_pred ---HHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCH--HHHHHHHHH--------HHccCCHHHH
Q 037911 333 ---FHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDT--FTCQIIVQG--------YGKEGRLLSA 399 (609)
Q Consensus 333 ---~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~--------~~~~~~~~~A 399 (609)
++.+.+.+ +-|..+|-..+..-...|+.+...++|+..+.. ++|-. ..|...|-. =....+.+.+
T Consensus 308 k~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ert 385 (677)
T KOG1915|consen 308 KFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERT 385 (677)
T ss_pred hhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 23333332 447777777788888889999999999999975 44422 122222221 1356889999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHH----HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037911 400 LNLVVELQRFGVSISRDIYDYLIVAL----CQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDE 475 (609)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 475 (609)
.++++...+. ++....||..+--.| .++.+...|.+++...+ |..|...+|...|..-.+.+++|.+.++|+.
T Consensus 386 r~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEk 462 (677)
T KOG1915|consen 386 RQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEK 462 (677)
T ss_pred HHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999998884 455566666554444 46677788888888775 4578899999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC
Q 037911 476 MVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESG-MLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYD 554 (609)
Q Consensus 476 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 554 (609)
.++-+. -+..+|......-...|+.+.|..+|+-+++.. +......|.+.|+--...|.+++|..+++.+.+. .+.
T Consensus 463 fle~~P-e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h 539 (677)
T KOG1915|consen 463 FLEFSP-ENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQH 539 (677)
T ss_pred HHhcCh-HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--ccc
Confidence 999763 466788888877778999999999999998753 2223445677777777899999999999999977 444
Q ss_pred hhcHHHHHHHHH-----hcC-----------CHHHHHHHHHHHHH
Q 037911 555 TESYNAVFNMFA-----EDG-----------DLSKLMELQKRFLR 583 (609)
Q Consensus 555 ~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~m~~ 583 (609)
..+|-++..--. +.| ....|.++|+++..
T Consensus 540 ~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 540 VKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred chHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 556666554333 333 56678888888754
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.2e-13 Score=131.89 Aligned_cols=509 Identities=15% Similarity=0.078 Sum_probs=318.7
Q ss_pred ChhhhhhhhhcCcCCCCChHHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHH
Q 037911 74 SHLTLLQNDLKPLLPHLGAHEISRVLLRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELV 153 (609)
Q Consensus 74 ~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 153 (609)
.+...+...++..|.+.-|-..++.+...+||.++++.++--|.. -.+-|..-|..+.....+.|+++.|.-.|.+++
T Consensus 157 eA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH--L~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI 234 (895)
T KOG2076|consen 157 EAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH--LNPKDYELWKRLADLSEQLGNINQARYCYSRAI 234 (895)
T ss_pred HHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 455566788999999999989999999999999999999877764 234477999999999999999999999999999
Q ss_pred HhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHH----HHHHHHhcCChHHHHHHHH
Q 037911 154 ELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNF----LLNGLLKLNCIDQCWQVYE 229 (609)
Q Consensus 154 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----ll~~~~~~~~~~~a~~~~~ 229 (609)
+. .|++......-.. .|-+.|+...|.+.|.++.+...+.|..-... .++.+...++.+.|++.++
T Consensus 235 ~~---~p~n~~~~~ers~-------L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 235 QA---NPSNWELIYERSS-------LYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred hc---CCcchHHHHHHHH-------HHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 87 3455554444444 78899999999999999998764333333333 3455667777799999998
Q ss_pred HHhhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---------------------------CCCCCHHhHHHH
Q 037911 230 EMGRI-GICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEE---------------------------GFDPDLVTYNTL 281 (609)
Q Consensus 230 ~m~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------------------------~~~~~~~~~~~l 281 (609)
..... +-..+...+++++..+.+...++.+......+... +..++..+. .+
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl 383 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RL 383 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hH
Confidence 87652 22456677888999999999999998888777652 112222221 12
Q ss_pred HHHHHhcCCHhHHHHHHHHHhhCC--ccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 037911 282 ISSYCKKGRLNDAFYLYRIMYRRN--VLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEG 359 (609)
Q Consensus 282 i~~~~~~g~~~~a~~~~~~~~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 359 (609)
+-++.+....+....+.....+.+ +.-+...|..+..++...|++.+|+.+|..+......-+...|-.+..+|...|
T Consensus 384 ~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~ 463 (895)
T KOG2076|consen 384 MICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG 463 (895)
T ss_pred hhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence 223333333344444444444444 333566788888888999999999999998887755556778888888888889
Q ss_pred ChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHH--------CCCCCCHHHHHHHHHHHHhcCCh
Q 037911 360 KMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQR--------FGVSISRDIYDYLIVALCQDNRP 431 (609)
Q Consensus 360 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~~~ll~~~~~~~~~ 431 (609)
..++|.+.|+..+... +-+...--.|...+.+.|+.++|++.+..+.. .+..|...........+.+.|+.
T Consensus 464 e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~ 542 (895)
T KOG2076|consen 464 EYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKR 542 (895)
T ss_pred hHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhH
Confidence 9999999998888652 22444555666777888899988888887542 12333444444444555555554
Q ss_pred HHHHHHHHHHHhC-----CC-----------------CC---------------------------------------CH
Q 037911 432 FAATSLLERIGQD-----GY-----------------VP---------------------------------------SL 450 (609)
Q Consensus 432 ~~a~~~~~~~~~~-----~~-----------------~~---------------------------------------~~ 450 (609)
++-+.....|... -+ .- +.
T Consensus 543 E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsi 622 (895)
T KOG2076|consen 543 EEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSI 622 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcH
Confidence 4422221111000 00 00 00
Q ss_pred ----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHH---HH-HHHHHHHhcCCCHhHHHHHHHHHHHC-CC--CC
Q 037911 451 ----EIYNELMESLCKCDSVADALLLKDEMVDRNI-KPSLS---TY-RALICCFCGIGRSGEAVSLMDEMLES-GM--LP 518 (609)
Q Consensus 451 ----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~---~~-~~li~~~~~~g~~~~A~~~~~~~~~~-~~--~p 518 (609)
..+.-++.++++.+++++|+.+...+.+... .-+.. .+ ...+.+.+..+++..|...++.|+.. +. .|
T Consensus 623 ddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~ 702 (895)
T KOG2076|consen 623 DDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDV 702 (895)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhh
Confidence 1223455566666677777766666654321 11111 11 22334455667777777777666653 11 11
Q ss_pred -CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 037911 519 -DSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMI 597 (609)
Q Consensus 519 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 597 (609)
-...|+.......+.|+-.--.+.+..+......-++..+......+...+.+..|+..+-+.... .||...++.+|
T Consensus 703 ~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~--~pd~Pl~nl~l 780 (895)
T KOG2076|consen 703 YQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQ--NPDSPLINLCL 780 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHh--CCCCcHHHHHH
Confidence 112233333334444332222333322222211111223333334456677888888877777644 78877777666
Q ss_pred H
Q 037911 598 H 598 (609)
Q Consensus 598 ~ 598 (609)
.
T Consensus 781 g 781 (895)
T KOG2076|consen 781 G 781 (895)
T ss_pred H
Confidence 4
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.4e-12 Score=121.43 Aligned_cols=388 Identities=13% Similarity=0.076 Sum_probs=245.1
Q ss_pred HHHhCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChH
Q 037911 180 YVKVGLIRESFKTFRKTLDVGFQP--SIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVD 257 (609)
Q Consensus 180 ~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 257 (609)
+-+.|.+--+..+....+..|+.- --.+|+.-...|.+.+.++-|..+|....+. ++-+...|...+..--..|..+
T Consensus 489 ~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~E 567 (913)
T KOG0495|consen 489 CEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRE 567 (913)
T ss_pred HhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHH
Confidence 334444444444444444444322 1234555555666666666666666666553 2334455555555555556677
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037911 258 KVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMV 337 (609)
Q Consensus 258 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 337 (609)
+...+|++....- +-....|......+-..|+...|..++.+..+.... +...|-..+.....+..++.|..+|.+..
T Consensus 568 sl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar 645 (913)
T KOG0495|consen 568 SLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKAR 645 (913)
T ss_pred HHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHh
Confidence 7777777666552 223344555555666677777777777777766544 56667777777777777777777777766
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH
Q 037911 338 HRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDT-FTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRD 416 (609)
Q Consensus 338 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 416 (609)
.. .|+..+|..-+..---.++.++|.+++++.++. .|+. ..|..+.+.+-+.++.+.|.+.|..-.+. ++-...
T Consensus 646 ~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ip 720 (913)
T KOG0495|consen 646 SI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIP 720 (913)
T ss_pred cc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCch
Confidence 53 455566655555555567777777777777664 3443 44666666677777777777766655443 233344
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 037911 417 IYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFC 496 (609)
Q Consensus 417 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 496 (609)
.|..+...--+.|.+..|..++++....+ +.+...|...|++-.+.|+.+.|..+..+.++. ++-+...|..-|....
T Consensus 721 LWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~ 798 (913)
T KOG0495|consen 721 LWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEP 798 (913)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhcc
Confidence 55555555566667777777777775554 446677777777777777777777777666654 3234455666666655
Q ss_pred cCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCh-hcHHHHHHHHHhcCCHHHHH
Q 037911 497 GIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDT-ESYNAVFNMFAEDGDLSKLM 575 (609)
Q Consensus 497 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~ 575 (609)
+.++-..+...+++. .-|+..+..+...+....++++|++.|...++. .||. .+|.-+...+...|.-++-.
T Consensus 799 ~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~--d~d~GD~wa~fykfel~hG~eed~k 871 (913)
T KOG0495|consen 799 RPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK--DPDNGDAWAWFYKFELRHGTEEDQK 871 (913)
T ss_pred CcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc--CCccchHHHHHHHHHHHhCCHHHHH
Confidence 555544444444333 446777778888888888999999999998876 4444 67888888888899888888
Q ss_pred HHHHHHHHc
Q 037911 576 ELQKRFLRL 584 (609)
Q Consensus 576 ~~~~~m~~~ 584 (609)
++++++...
T Consensus 872 ev~~~c~~~ 880 (913)
T KOG0495|consen 872 EVLKKCETA 880 (913)
T ss_pred HHHHHHhcc
Confidence 888888743
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.3e-11 Score=118.84 Aligned_cols=439 Identities=13% Similarity=0.050 Sum_probs=320.8
Q ss_pred CChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 037911 140 NKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLN 219 (609)
Q Consensus 140 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 219 (609)
.+.++|+.++..+++- +|.+.+.+. +|++..-++.|.+++++..+. ++.+...|......=-.+|
T Consensus 390 E~~~darilL~rAvec---cp~s~dLwl-----------AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ng 454 (913)
T KOG0495|consen 390 EEPEDARILLERAVEC---CPQSMDLWL-----------ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANG 454 (913)
T ss_pred cChHHHHHHHHHHHHh---ccchHHHHH-----------HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcC
Confidence 3444566666666654 445555443 677888899999999999874 5778888888877777889
Q ss_pred ChHHHHHHHHH----HhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHhHHHHHHHHHhcCCHhH
Q 037911 220 CIDQCWQVYEE----MGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPD--LVTYNTLISSYCKKGRLND 293 (609)
Q Consensus 220 ~~~~a~~~~~~----m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~ 293 (609)
+.+...++.++ +...|+..+...|-.=...|-..|..-.+..+....+..|+.-. -.+|+.-...|.+.+.++-
T Consensus 455 n~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~c 534 (913)
T KOG0495|consen 455 NVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIEC 534 (913)
T ss_pred CHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHH
Confidence 99988888765 45678888888888888888888999889998888887776532 4578888888999999999
Q ss_pred HHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037911 294 AFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMG 373 (609)
Q Consensus 294 a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 373 (609)
|..+|...++.-+. +...|......--..|..+....+|++.... ++.....|-....-+-..|++..|..++....+
T Consensus 535 arAVya~alqvfp~-k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~ 612 (913)
T KOG0495|consen 535 ARAVYAHALQVFPC-KKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFE 612 (913)
T ss_pred HHHHHHHHHhhccc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 99999888875433 5567777666666778888888888888876 333444555555666678899999999888887
Q ss_pred CCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 037911 374 NGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIY 453 (609)
Q Consensus 374 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 453 (609)
... .+...|..-+..-..+..++.|..+|.+.... .++...|..-+....-.+..++|.+++++..+. ++.-...|
T Consensus 613 ~~p-nseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~ 688 (913)
T KOG0495|consen 613 ANP-NSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLW 688 (913)
T ss_pred hCC-CcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHH
Confidence 633 26677888888888888899999988887765 567777777777777778888888888877654 23345667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 037911 454 NELMESLCKCDSVADALLLKDEMVDRNIKPS-LSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCM 532 (609)
Q Consensus 454 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 532 (609)
..+...+-+.++++.|.+.|..-.+. + |+ ...|-.+...--+.|.+-.|..++++..-.+ +-+...|...+..-.+
T Consensus 689 lmlGQi~e~~~~ie~aR~aY~~G~k~-c-P~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR 765 (913)
T KOG0495|consen 689 LMLGQIEEQMENIEMAREAYLQGTKK-C-PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELR 765 (913)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhcccc-C-CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHH
Confidence 77778888888888888777655443 2 44 3455555566666778888888888877654 4466677777888888
Q ss_pred cCCHHHHHHHHHHHHHcC-----------------------------CCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037911 533 EKDVNKAEALLGFFAKKF-----------------------------QIYDTESYNAVFNMFAEDGDLSKLMELQKRFLR 583 (609)
Q Consensus 533 ~g~~~~A~~~~~~~~~~~-----------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 583 (609)
.|+.+.|..++.+..+.. +.-|+.+.-++...+....++++|.+.|.+.++
T Consensus 766 ~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk 845 (913)
T KOG0495|consen 766 AGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVK 845 (913)
T ss_pred cCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 888887777666555431 133455566677778888899999999999996
Q ss_pred cCCCCC-hhhHHHHHHHHhccc
Q 037911 584 LGFAPN-NLTCKYMIHSLWKGM 604 (609)
Q Consensus 584 ~g~~p~-~~~~~~ll~~~~~~~ 604 (609)
. .|| -.+|.-+..-....|
T Consensus 846 ~--d~d~GD~wa~fykfel~hG 865 (913)
T KOG0495|consen 846 K--DPDNGDAWAWFYKFELRHG 865 (913)
T ss_pred c--CCccchHHHHHHHHHHHhC
Confidence 5 444 355655555554444
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.4e-13 Score=122.62 Aligned_cols=411 Identities=14% Similarity=0.120 Sum_probs=225.3
Q ss_pred CChhHHHHHHHHhhhcCCCCCCHH----hHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhH
Q 037911 104 SDSVSALTFFNWVKNDLEIKPTSS----NYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWA 179 (609)
Q Consensus 104 ~~~~~A~~~f~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 179 (609)
..+.+|++||+.+..+-. ..+-. ..+.+...+.+.|.+++|+..|+..++. .|.-...++.++ .
T Consensus 251 r~fskaikfyrmaldqvp-sink~~rikil~nigvtfiq~gqy~dainsfdh~m~~---~pn~~a~~nl~i--------~ 318 (840)
T KOG2003|consen 251 REFSKAIKFYRMALDQVP-SINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE---APNFIAALNLII--------C 318 (840)
T ss_pred hhHHHHHHHHHHHHhhcc-ccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh---CccHHhhhhhhh--------h
Confidence 578899999999996521 11222 2333444567889999999999999976 334445565555 5
Q ss_pred HHHhCCHHHHHHHHHHHHhCCCCC------------CHHHHHHHH-----HHHHhcCC--hHHHHHHHHHHhhCCCCCCH
Q 037911 180 YVKVGLIRESFKTFRKTLDVGFQP------------SIVSCNFLL-----NGLLKLNC--IDQCWQVYEEMGRIGICPNT 240 (609)
Q Consensus 180 ~~~~g~~~~A~~~~~~~~~~~~~~------------~~~~~~~ll-----~~~~~~~~--~~~a~~~~~~m~~~~~~~~~ 240 (609)
+.-.|+.++..+.|.+|+.....+ +....|.-+ .-+-+.+. .++++-.--+++.--+.|+.
T Consensus 319 ~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~f 398 (840)
T KOG2003|consen 319 AFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDF 398 (840)
T ss_pred heecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccch
Confidence 677899999999999998643222 333333222 11222111 12222222222222223331
Q ss_pred H-----HHHH----------------HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH-HHh-cCCHhHHHHH
Q 037911 241 H-----TFNI----------------LTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISS-YCK-KGRLNDAFYL 297 (609)
Q Consensus 241 ~-----~~~~----------------l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~-~g~~~~a~~~ 297 (609)
. .... -..-+.+.|+++.|+++++-+.+..-+.-...-+.|-.. |.+ ..++.+|.++
T Consensus 399 a~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqy 478 (840)
T KOG2003|consen 399 AAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQY 478 (840)
T ss_pred hcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHH
Confidence 1 0000 012245667777777776666554322222222222222 222 2245556555
Q ss_pred HHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCc
Q 037911 298 YRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIY 377 (609)
Q Consensus 298 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 377 (609)
-+.....+.. +....+.-.+....+|++++|.+.|++.......-....|| +.-.+-..|++++|++.|-++... +.
T Consensus 479 ad~aln~dry-n~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~ 555 (840)
T KOG2003|consen 479 ADIALNIDRY-NAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LL 555 (840)
T ss_pred HHHHhccccc-CHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HH
Confidence 5554433211 22222222233344667777777777776552111112222 122345667777777777665432 12
Q ss_pred cCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 037911 378 PDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELM 457 (609)
Q Consensus 378 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 457 (609)
.+......+...|--..+...|++++.+.... ++-|+.+...+...|-+.|+-..|.+..-+-- .-++.+..+...|.
T Consensus 556 nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsy-ryfp~nie~iewl~ 633 (840)
T KOG2003|consen 556 NNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSY-RYFPCNIETIEWLA 633 (840)
T ss_pred hhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcc-cccCcchHHHHHHH
Confidence 24555666666666677777777777665443 34466677777777777776555555433221 12355666666677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 037911 458 ESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALIC-CFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEK 534 (609)
Q Consensus 458 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 534 (609)
..|....-+++|+.+|++..- +.|+..-|..|+. ++.+.|++++|+.+|+.... .++-|...+.-|++.+...|
T Consensus 634 ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr-kfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 634 AYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-hCccchHHHHHHHHHhcccc
Confidence 777776777777777766543 4477777776663 34456777777777777655 35556666666666665555
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.6e-11 Score=113.63 Aligned_cols=387 Identities=13% Similarity=0.052 Sum_probs=277.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHhH
Q 037911 200 GFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPD-LVTY 278 (609)
Q Consensus 200 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~ 278 (609)
+...|...+-.....+.+.|....|...|.+.... .+-.-..|.-|..... + ++........+ ..| ...-
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~lit---~----~e~~~~l~~~l-~~~~h~M~ 229 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELIT---D----IEILSILVVGL-PSDMHWMK 229 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhhc---h----HHHHHHHHhcC-cccchHHH
Confidence 33455555445555667788899999999887654 3445555554444322 1 22222222221 211 1111
Q ss_pred H-HHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHH
Q 037911 279 N-TLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGL--SPDIVSYNTLIFAY 355 (609)
Q Consensus 279 ~-~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~ 355 (609)
. -+..++-.....+++++-.+.....|..-+...-+....+.....|+++|+.+|+++.+... .-|..+|..++..-
T Consensus 230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~ 309 (559)
T KOG1155|consen 230 KFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH
Confidence 1 12345666667888888888888888765555556666667788899999999999998731 12677888776443
Q ss_pred HHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 037911 356 CKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAAT 435 (609)
Q Consensus 356 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 435 (609)
..+- .+..+.+-.-.--+--+.|+..+.+-|+-.++.++|..+|+...+.+. -....|+.+.+-|...++...|.
T Consensus 310 --~~~s--kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 310 --NDKS--KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred --hhhH--HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHH
Confidence 3322 222222211111123456788889999999999999999999999873 36778888899999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCC
Q 037911 436 SLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESG 515 (609)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 515 (609)
.-++...+-. +.|-..|-.|.++|.-.+...-|+-+|++..+... .|...|.+|..+|.+.++.++|++.|..+...|
T Consensus 385 ~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP-nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 385 ESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKP-NDSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 9999998765 66889999999999999999999999999988642 578899999999999999999999999999866
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC---CCCCh---hcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 037911 516 MLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKF---QIYDT---ESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPN 589 (609)
Q Consensus 516 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 589 (609)
..+...+..|.+.|-+.++.++|...+++.++.. ...+. ..-.-|..-+.+.+++++|..+....... .+.
T Consensus 463 -dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e 539 (559)
T KOG1155|consen 463 -DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETE 539 (559)
T ss_pred -ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--Cch
Confidence 4467889999999999999999999998877632 11222 22233556678899999999887777633 677
Q ss_pred hhhHHHHHHHHhcccc
Q 037911 590 NLTCKYMIHSLWKGME 605 (609)
Q Consensus 590 ~~~~~~ll~~~~~~~~ 605 (609)
..--+.|++.+.+.+.
T Consensus 540 ~eeak~LlReir~~~~ 555 (559)
T KOG1155|consen 540 CEEAKALLREIRKIQA 555 (559)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 7777888888776654
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-12 Score=130.02 Aligned_cols=259 Identities=10% Similarity=0.032 Sum_probs=149.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCC
Q 037911 318 NGLCKEGKVREAHQLFHRMVHRGLSPDIV--SYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGR 395 (609)
Q Consensus 318 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 395 (609)
..+...|+.+.|.+++.+..+. .|+.. ........+...|+++.|...++.+.+.. +-+...+..+...+...|+
T Consensus 126 ~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d 202 (409)
T TIGR00540 126 EAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGA 202 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhh
Confidence 3444445555555555544433 12221 12222344444555555555555554442 1133444445555555555
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHH-HHHHHH---HhcCChHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHH
Q 037911 396 LLSALNLVVELQRFGVSISRDIYD-YLIVAL---CQDNRPFAATSLLERIGQDG---YVPSLEIYNELMESLCKCDSVAD 468 (609)
Q Consensus 396 ~~~A~~~~~~~~~~~~~~~~~~~~-~ll~~~---~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~ 468 (609)
+++|.+.+..+.+.+.. +...+. ....++ ...+..+++...+..+.... .+.+...+..+...+...|+.++
T Consensus 203 ~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~ 281 (409)
T TIGR00540 203 WQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDS 281 (409)
T ss_pred HHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHH
Confidence 55555555555544322 222111 111111 11122122233333332221 12477888888889999999999
Q ss_pred HHHHHHHHHHCCCCCCHHH---HHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCCHHHHHHHH
Q 037911 469 ALLLKDEMVDRNIKPSLST---YRALICCFCGIGRSGEAVSLMDEMLESGMLPDS--QICRVLINGYCMEKDVNKAEALL 543 (609)
Q Consensus 469 A~~~~~~~~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~ 543 (609)
|.+++++..+.. ||... ...........++.+.+.+.++...+.. +-|+ ....++.+.+.+.|++++|.+.|
T Consensus 282 A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~l 358 (409)
T TIGR00540 282 AQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAF 358 (409)
T ss_pred HHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHH
Confidence 999999988764 44332 1112222334578888899998888642 3344 56778999999999999999999
Q ss_pred HHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037911 544 GFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLR 583 (609)
Q Consensus 544 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 583 (609)
+........|+...+..+...+.+.|+.++|.++|++.+.
T Consensus 359 e~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 359 KNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9533333378888888999999999999999999998753
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3e-12 Score=126.27 Aligned_cols=252 Identities=10% Similarity=0.038 Sum_probs=151.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHH
Q 037911 321 CKEGKVREAHQLFHRMVHRGLSPDIVSYN--TLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLS 398 (609)
Q Consensus 321 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 398 (609)
.+.|+++.|...+.++.+. .|+...+. .....+...|+++.|...++++.+.. +-+......+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHH
Confidence 4444555555555544442 23322221 11333444455555555555544432 1133444444455555555555
Q ss_pred HHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037911 399 ALNLVVELQRFGVSISR-------DIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALL 471 (609)
Q Consensus 399 A~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 471 (609)
|.+++..+.+.+...+. ..|..++.......+.+.....++.+... .+.++.....+...+...|+.++|.+
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 55555555444322111 11222222222223334444555554222 24577778888888888899999998
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 037911 472 LKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQ 551 (609)
Q Consensus 472 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 551 (609)
++++..+.. |+.... ++.+....++.+++.+..+...+.. +-|...+..+...|.+.|++++|.+.|+...+.
T Consensus 285 ~L~~~l~~~--~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~-- 357 (398)
T PRK10747 285 IILDGLKRQ--YDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ-- 357 (398)
T ss_pred HHHHHHhcC--CCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--
Confidence 888887743 454322 2333445688888998888888643 445667788888999999999999999988876
Q ss_pred CCChhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037911 552 IYDTESYNAVFNMFAEDGDLSKLMELQKRFLR 583 (609)
Q Consensus 552 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 583 (609)
.|+...+..+..++.+.|+.++|.+++++.+.
T Consensus 358 ~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 358 RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 78888888888899999999999998888764
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-09 Score=101.46 Aligned_cols=439 Identities=8% Similarity=0.011 Sum_probs=323.6
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCC
Q 037911 125 TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPS 204 (609)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 204 (609)
+...|-..++-=..++++..|..+|+.++.. ...+...+...+. .=.+...+..|..++++++..-...|
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdv---d~r~itLWlkYae-------~Emknk~vNhARNv~dRAvt~lPRVd 141 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDV---DYRNITLWLKYAE-------FEMKNKQVNHARNVWDRAVTILPRVD 141 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc---ccccchHHHHHHH-------HHHhhhhHhHHHHHHHHHHHhcchHH
Confidence 4456666666667788999999999999864 2345556666666 66788999999999999987532222
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 037911 205 IVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISS 284 (609)
Q Consensus 205 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 284 (609)
. .|--.+..=-..|++..|.++|++-.+ ..|+...|.+.|+.-.+.+.++.|..+++...-- .|++.+|--....
T Consensus 142 q-lWyKY~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarF 216 (677)
T KOG1915|consen 142 Q-LWYKYIYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARF 216 (677)
T ss_pred H-HHHHHHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHH
Confidence 2 344444444567999999999999887 5799999999999999999999999999999865 6999999999999
Q ss_pred HHhcCCHhHHHHHHHHHhhC-Cc-cCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCC
Q 037911 285 YCKKGRLNDAFYLYRIMYRR-NV-LPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPD--IVSYNTLIFAYCKEGK 360 (609)
Q Consensus 285 ~~~~g~~~~a~~~~~~~~~~-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~ 360 (609)
-.++|....|..+|+...+. |- .-+...+.+...--.++..++.|.-+|+-..++ ++.+ ...|......--+-|+
T Consensus 217 E~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd 295 (677)
T KOG1915|consen 217 EEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGD 295 (677)
T ss_pred HHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcc
Confidence 99999999999999988763 11 112334444444445677889999999988876 3323 3445555544445666
Q ss_pred hHHHHHH--------HHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH------HHH---HHHH
Q 037911 361 MQESKSL--------LYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRD------IYD---YLIV 423 (609)
Q Consensus 361 ~~~A~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------~~~---~ll~ 423 (609)
.....+. ++.++..+ +.|..+|--.++.-...|+.+...++|++....-++.... +|- ..+-
T Consensus 296 ~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYaly 374 (677)
T KOG1915|consen 296 KEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALY 374 (677)
T ss_pred hhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHH
Confidence 5443332 34444442 4577888888888888999999999999998764322211 111 1111
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC
Q 037911 424 ALCQDNRPFAATSLLERIGQDGYVPSLEIYN----ELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIG 499 (609)
Q Consensus 424 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 499 (609)
.-....+.+.+.++++..++. ++-...|+. .......++.++..|.+++...+. .-|...+|...|..-.+.+
T Consensus 375 eEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~ 451 (677)
T KOG1915|consen 375 EELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLR 451 (677)
T ss_pred HHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHh
Confidence 223467778888899888662 233334443 344445678999999999988764 4588999999999999999
Q ss_pred CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCChhcHHHHHHHHHhcCCHHHHHHHH
Q 037911 500 RSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQ-IYDTESYNAVFNMFAEDGDLSKLMELQ 578 (609)
Q Consensus 500 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 578 (609)
++|....+|++.++-+ +-+-.+|......-...|+.+.|..+|..++.... ......|.+.|+--...|.++.|..++
T Consensus 452 efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LY 530 (677)
T KOG1915|consen 452 EFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALY 530 (677)
T ss_pred hHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHH
Confidence 9999999999999765 44677888888888889999999999999986532 112356777888778899999999999
Q ss_pred HHHHHc
Q 037911 579 KRFLRL 584 (609)
Q Consensus 579 ~~m~~~ 584 (609)
+++++.
T Consensus 531 erlL~r 536 (677)
T KOG1915|consen 531 ERLLDR 536 (677)
T ss_pred HHHHHh
Confidence 999965
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.8e-11 Score=113.25 Aligned_cols=308 Identities=16% Similarity=0.122 Sum_probs=152.4
Q ss_pred CCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhcccc--------------chh--------H
Q 037911 122 IKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTED--------------CNW--------A 179 (609)
Q Consensus 122 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------~~~--------~ 179 (609)
...|..-+.....++.+.|..+.|+..|.+.+.. .|-....|..|..+... ..| +
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~---~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a 236 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR---YPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKA 236 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc---CCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHH
Confidence 3456666677777778888888888887777754 33444444444331100 000 3
Q ss_pred HHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCChH
Q 037911 180 YVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGI--CPNTHTFNILTHVFCKNGDVD 257 (609)
Q Consensus 180 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~l~~~~~~~g~~~ 257 (609)
|....+.++++.-.+.....|++-+...-+....+.-...++++|+.+|+++.+... -.|..+|..++- .+..+-.
T Consensus 237 ~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~~~~sk 314 (559)
T KOG1155|consen 237 YQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HHhhhHH
Confidence 444445555555555555555444444434444444444555555555555554320 013344444432 2221111
Q ss_pred HHHHHHHH-HHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037911 258 KVNGFLEK-IEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRM 336 (609)
Q Consensus 258 ~a~~~~~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 336 (609)
+..+.+ ....+ +--+.|...+.+-|.-.++.++|...|++.++.+.. ....|+.+.+-|....+...|.+-++..
T Consensus 315 --Ls~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 315 --LSYLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred --HHHHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 111111 00000 112234444444555555555555555555555433 3455555555555555555555555555
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH
Q 037911 337 VHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRD 416 (609)
Q Consensus 337 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 416 (609)
.+-+ +.|-..|-.|..+|.-.+...-|+-.|++..+-. +-|...|.+|.++|.+.++.++|++.|......| ..+..
T Consensus 391 vdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~ 467 (559)
T KOG1155|consen 391 VDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGS 467 (559)
T ss_pred HhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchH
Confidence 5542 3355555555555555555555555555555431 2244555555555555555555555555555544 22445
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHH
Q 037911 417 IYDYLIVALCQDNRPFAATSLLERI 441 (609)
Q Consensus 417 ~~~~ll~~~~~~~~~~~a~~~~~~~ 441 (609)
.+..+...+-+.++..+|...+++.
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~ 492 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKY 492 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 5555555555555555555554443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.8e-12 Score=125.58 Aligned_cols=251 Identities=11% Similarity=0.047 Sum_probs=113.6
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHhHH--HHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHH
Q 037911 251 CKNGDVDKVNGFLEKIEEEGFDPDLVTYN--TLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVRE 328 (609)
Q Consensus 251 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 328 (609)
.+.|+++.|...+.++.+. .|+...+. .....+...|+++.|...++++.+..+. +......+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHH
Confidence 4444455555555444433 22222111 1233444445555555555554444322 33444444445555555555
Q ss_pred HHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHH
Q 037911 329 AHQLFHRMVHRGLSPDI-------VSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALN 401 (609)
Q Consensus 329 a~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 401 (609)
|.+++..+.+.+..++. ..|..++.......+.+...++++.+.+. .+.+......+...+...|+.++|.+
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 55555555444322111 01112222222222333333333333221 12244444555555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 037911 402 LVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNI 481 (609)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 481 (609)
++++..+. .++.... ++.+....++++++.+.++...+.. +.|...+..+...+.+.+++++|.+.|+...+.
T Consensus 285 ~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~-- 357 (398)
T PRK10747 285 IILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ-- 357 (398)
T ss_pred HHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--
Confidence 55555442 2222111 1222223355555555555554332 334445555566666666666666666666553
Q ss_pred CCCHHHHHHHHHHHhcCCCHhHHHHHHHHHH
Q 037911 482 KPSLSTYRALICCFCGIGRSGEAVSLMDEML 512 (609)
Q Consensus 482 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 512 (609)
.|+..++..+...+.+.|+.++|.+++++..
T Consensus 358 ~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 358 RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2555555566666666666666666666554
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.61 E-value=5e-12 Score=125.50 Aligned_cols=288 Identities=11% Similarity=-0.024 Sum_probs=135.1
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HhHHHHHHHHHhcCCHhH
Q 037911 217 KLNCIDQCWQVYEEMGRIGICPNT-HTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDL--VTYNTLISSYCKKGRLND 293 (609)
Q Consensus 217 ~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~ 293 (609)
..|+++.|.+.+.+..+. .|+. ..+-....+....|+.+.|.+.+.+..+.. |+. ...-.....+...|+++.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHH
Confidence 356666666666665543 2332 222333455556666666666666665542 332 223334556666667777
Q ss_pred HHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HHcCChHHHHHHHHH
Q 037911 294 AFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAY---CKEGKMQESKSLLYE 370 (609)
Q Consensus 294 a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~---~~~g~~~~A~~~~~~ 370 (609)
|...++.+.+..+. +...+..+...+...|++++|.+++..+.+.+..+.......-..++ ...+..+++.+.+..
T Consensus 172 Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 172 ARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 77777666665443 44556666666667777777777777666664332221111111111 112222222333333
Q ss_pred HHHCCC---ccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcCChHHHHHHHHHHHhCC
Q 037911 371 MMGNGI---YPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIV--ALCQDNRPFAATSLLERIGQDG 445 (609)
Q Consensus 371 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~ 445 (609)
+.+... +.+...+..+...+...|+.++|.+++++..+.........+. ++. .....++...+.+.++...+..
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP-LCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH-HHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 333211 1255556666666666666666666666666653221111000 111 1112233334444444433221
Q ss_pred CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHH
Q 037911 446 YVPSL--EIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEM 511 (609)
Q Consensus 446 ~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 511 (609)
+.+. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++.
T Consensus 330 -p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 330 -DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred -CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1122 3333444444444555555554443222222244444444444444445555554444443
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.2e-12 Score=117.02 Aligned_cols=219 Identities=14% Similarity=0.048 Sum_probs=113.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHH
Q 037911 323 EGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNL 402 (609)
Q Consensus 323 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 402 (609)
.|+.-+|..-|+..++....++ ..|..+..+|....+.++....|++..+.+. -|..+|..-.+.+.-.+++++|..=
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHHHHH
Confidence 4555666666666665432222 1255555556666666666666666655432 2455555555555566666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037911 403 VVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIK 482 (609)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 482 (609)
|++.+..++ -+...|.-+.-+..+.+++.++...|++.+.. ++..+..|+.....+...++++.|.+.|+..++....
T Consensus 417 F~Kai~L~p-e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 417 FQKAISLDP-ENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHhhcCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 666655531 13334444444445555666666666665443 3445556666666666666666666666665543211
Q ss_pred -----CCHHH--HHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 037911 483 -----PSLST--YRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFA 547 (609)
Q Consensus 483 -----p~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 547 (609)
.+... -..++.. .=.+++..|+++++++++.. +-....|.+|...-.+.|+.++|+++|++..
T Consensus 495 ~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred cccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 01111 1111111 11255666666666665432 1123345566666666666666666665554
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.5e-15 Score=139.89 Aligned_cols=260 Identities=16% Similarity=0.124 Sum_probs=98.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccC
Q 037911 316 LMNGLCKEGKVREAHQLFHRMVHRGLSP-DIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEG 394 (609)
Q Consensus 316 ll~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 394 (609)
+...+.+.|++++|+++++.......+| |...|..+...+...++++.|...++++...+.. +...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 3455556666666666664433332112 2333333444444566666666666666654322 34445555555 5666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 037911 395 RLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQ-DGYVPSLEIYNELMESLCKCDSVADALLLK 473 (609)
Q Consensus 395 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 473 (609)
++++|..++....+. .+++..+..++..+...++++++..+++.+.. ...+.+...|..+...+.+.|+.++|++.+
T Consensus 92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 666666666555443 23445555666666677777777777766532 223456777788888888888888888888
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 037911 474 DEMVDRNIKP-SLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQI 552 (609)
Q Consensus 474 ~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 552 (609)
++.++.. | |......++..+...|+.+++.++++...+.. +.|+..+..+..++...|+.++|...+++..+.. +
T Consensus 170 ~~al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 170 RKALELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 8888754 5 46667778888888888888888887776643 4556677788888888888888888888888752 4
Q ss_pred CChhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037911 553 YDTESYNAVFNMFAEDGDLSKLMELQKRFLR 583 (609)
Q Consensus 553 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 583 (609)
.|+.....+..++...|+.++|.++.++..+
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 4677778888888888888888888877653
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.2e-15 Score=138.95 Aligned_cols=261 Identities=18% Similarity=0.176 Sum_probs=85.5
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 037911 131 LIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNF 210 (609)
Q Consensus 131 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 210 (609)
.++..+.+.|++++|++++.+.... ...|.+...+..+.. .....|++++|+..++++.+.+ +-++..+..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~-~~~~~~~~~~~~~a~-------La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~ 83 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQK-IAPPDDPEYWRLLAD-------LAWSLGDYDEAIEAYEKLLASD-KANPQDYER 83 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccc-ccccccccccccccc-------cccccccccccccccccccccc-ccccccccc
Confidence 4466677777777777777554433 112334444444444 4556677777777777776654 224555555
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHHhHHHHHHHHHhcC
Q 037911 211 LLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEG-FDPDLVTYNTLISSYCKKG 289 (609)
Q Consensus 211 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g 289 (609)
++.. ...+++++|.+++++..+. .++...+..++..+...++++++.++++.+.... .+.+...|..+...+.+.|
T Consensus 84 l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G 160 (280)
T PF13429_consen 84 LIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLG 160 (280)
T ss_dssp -------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCC
T ss_pred cccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC
Confidence 5555 5667777777776665443 2445555666666777777777777777765432 2345556666667777777
Q ss_pred CHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 037911 290 RLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLY 369 (609)
Q Consensus 290 ~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 369 (609)
+.++|++.+++..+..+. |......++..+...|+.+++.+++....+.. +.|...+..+..++...|+.++|+.+++
T Consensus 161 ~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~ 238 (280)
T PF13429_consen 161 DPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLE 238 (280)
T ss_dssp HHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccc
Confidence 777777777777765433 45566666777777777777666666665542 3344556666777777777777777777
Q ss_pred HHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 037911 370 EMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVEL 406 (609)
Q Consensus 370 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 406 (609)
+..+.. +.|......+..++...|+.++|..+.++.
T Consensus 239 ~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 239 KALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHS-TT-HHHHHHHHHHHT---------------
T ss_pred cccccc-cccccccccccccccccccccccccccccc
Confidence 766542 235666666677777777777777666554
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2e-11 Score=113.68 Aligned_cols=220 Identities=13% Similarity=0.067 Sum_probs=158.4
Q ss_pred HHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 037911 356 CKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAAT 435 (609)
Q Consensus 356 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 435 (609)
.-.|+.-.|..-|+..++....+ ...|-.+...|...++.++-...|.+....+. -++.+|..-.+.+.-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHHH
Confidence 34578888888888887764332 22277777778888888888888888888763 36777888888888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCC
Q 037911 436 SLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESG 515 (609)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 515 (609)
.-|++.+... +.+...|-.+..+..+.+.+++++..|++.+++ ++--+..|+.....+...+++++|.+.|+.+++.
T Consensus 415 aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L- 491 (606)
T KOG0547|consen 415 ADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL- 491 (606)
T ss_pred HHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh-
Confidence 8888887654 345666777777777888888888888888876 4345577888888888888888888888888763
Q ss_pred CCCC-------HH--HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037911 516 MLPD-------SQ--ICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLR 583 (609)
Q Consensus 516 ~~p~-------~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 583 (609)
.|+ .. +-..++-.- -.+++..|.+++.+..+.. +.....|..|...-.+.|+.++|+++|++...
T Consensus 492 -E~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 492 -EPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred -ccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 232 21 222222222 2378888888888888652 11225688888888888888888888887653
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.3e-11 Score=107.46 Aligned_cols=302 Identities=16% Similarity=0.116 Sum_probs=193.6
Q ss_pred CChHHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHH--hHH
Q 037911 90 LGAHEISRVLLRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVD--VFQ 167 (609)
Q Consensus 90 ~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--~~~ 167 (609)
++...+.++=.....++++|.+.|-.+.+ ..+-+.++...|.+.+.+.|..+.|+.+.+.+.+. ++.+.... ...
T Consensus 35 lsr~Yv~GlNfLLs~Q~dKAvdlF~e~l~--~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~ 111 (389)
T COG2956 35 LSRDYVKGLNFLLSNQPDKAVDLFLEMLQ--EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQ 111 (389)
T ss_pred ccHHHHhHHHHHhhcCcchHHHHHHHHHh--cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 34445555544556788899999988875 23446777788899999999999999999988876 33332222 334
Q ss_pred HHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH----HHH
Q 037911 168 DLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNT----HTF 243 (609)
Q Consensus 168 ~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~ 243 (609)
.+.+ -|...|-++.|.++|..+.+.| .--..+...|+..|-..++|++|+++-+++.+.+-.+.. ..|
T Consensus 112 qL~~-------Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfy 183 (389)
T COG2956 112 QLGR-------DYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFY 183 (389)
T ss_pred HHHH-------HHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHH
Confidence 4555 7888888888888888888754 334556777888888888888888888888775433321 233
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhc
Q 037911 244 NILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKE 323 (609)
Q Consensus 244 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 323 (609)
.-|...+....+++.|..++++..+.+ +.++..--.+.+.+...|+++.|.+.++...+.++.--..+...|..+|...
T Consensus 184 CELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~l 262 (389)
T COG2956 184 CELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQL 262 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHh
Confidence 444444555677777788777777653 1133333445567777788888888887777765544445566677777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHc---cCCHHHHH
Q 037911 324 GKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGK---EGRLLSAL 400 (609)
Q Consensus 324 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~ 400 (609)
|+.++....+..+.+... ....-..+-..-....-.+.|...+.+-+.. .|+...+..++..... .|...+.+
T Consensus 263 g~~~~~~~fL~~~~~~~~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL 338 (389)
T COG2956 263 GKPAEGLNFLRRAMETNT--GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESL 338 (389)
T ss_pred CCHHHHHHHHHHHHHccC--CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhH
Confidence 777777777777776532 2222223333323333345555555444443 5777777777765533 23345555
Q ss_pred HHHHHHH
Q 037911 401 NLVVELQ 407 (609)
Q Consensus 401 ~~~~~~~ 407 (609)
..++.|.
T Consensus 339 ~~lr~mv 345 (389)
T COG2956 339 DLLRDMV 345 (389)
T ss_pred HHHHHHH
Confidence 5555554
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.8e-11 Score=111.67 Aligned_cols=289 Identities=10% Similarity=-0.006 Sum_probs=222.8
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHH
Q 037911 309 DLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQ 388 (609)
Q Consensus 309 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 388 (609)
+......-.+-+...+++.+..++.+...+. .++....+..-|.++...|+..+-..+-.++.+. .+-...+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 4455555566677888999999999998886 3556666766777888999988888888888875 3446688999988
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 037911 389 GYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVAD 468 (609)
Q Consensus 389 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 468 (609)
.|...|+..+|.++|.+....+.. =...|-.....|.-.|..++|...+....+.- +....-+--+.--|.+.++.+-
T Consensus 321 YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHH
Confidence 888889999999999988765422 24567788888988898899988877663221 1111112224445778899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHC--CCC----CCHHHHHHHHHHHHccCCHHHHHHH
Q 037911 469 ALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLES--GML----PDSQICRVLINGYCMEKDVNKAEAL 542 (609)
Q Consensus 469 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~----p~~~~~~~l~~~~~~~g~~~~A~~~ 542 (609)
|.++|.+..... +-|+..++-+.......+.+.+|..+|+..... .+. --..+++.|+.+|.+.+.+++|+..
T Consensus 399 Ae~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 399 AEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 999999988753 246777888887777889999999999988731 111 1334688999999999999999999
Q ss_pred HHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHhcccc
Q 037911 543 LGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMIHSLWKGME 605 (609)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 605 (609)
+++..... +.+..++.+++-.|...|+++.|+..|.+.+ .+.||..+...++......++
T Consensus 478 ~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~aie~~~ 537 (611)
T KOG1173|consen 478 YQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAIEDSE 537 (611)
T ss_pred HHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHHHhhh
Confidence 99988653 6678899999999999999999999999999 779999999999887665543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.9e-11 Score=106.84 Aligned_cols=286 Identities=16% Similarity=0.181 Sum_probs=160.7
Q ss_pred CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH------HhHHHHHHHHHhcCCHh
Q 037911 219 NCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDL------VTYNTLISSYCKKGRLN 292 (609)
Q Consensus 219 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~ 292 (609)
++.++|.++|-+|.+.. +-+..+.-.|.+.|-+.|.+|.|+.+.+.+.+. ||. .....|..-|...|-+|
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 44455555555554421 122233334445555555555555555555443 221 12333445555566666
Q ss_pred HHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCChHHHHHHH
Q 037911 293 DAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDI----VSYNTLIFAYCKEGKMQESKSLL 368 (609)
Q Consensus 293 ~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~ 368 (609)
.|+++|..+.+.+.- -......|+..|-...+|++|+++-+++.+.|-.+.. ..|--|...+....+++.|..++
T Consensus 125 RAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 125 RAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 666666665553321 2344455666666666666666666665554332221 23333444444556677777777
Q ss_pred HHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 037911 369 YEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVP 448 (609)
Q Consensus 369 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 448 (609)
.+..+.+.+ ....--.+.+.....|+++.|.+.++...+.+..--+.+...+..+|...|++.+....+.++.+....+
T Consensus 204 ~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 204 KKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred HHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 777665322 3344445566677777777777777777777665566677777778888888777777777775543333
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc---CCCHhHHHHHHHHHHHC
Q 037911 449 SLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCG---IGRSGEAVSLMDEMLES 514 (609)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~ 514 (609)
..-..+...-....-.+.|..++.+-+.+ +|+...+..+|..... .|...+...+++.|+..
T Consensus 283 --~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 283 --DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred --cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 33333444444445555666555554443 2888888888876543 35566667777777654
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.3e-11 Score=108.15 Aligned_cols=292 Identities=13% Similarity=0.107 Sum_probs=201.3
Q ss_pred cCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 037911 288 KGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSL 367 (609)
Q Consensus 288 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 367 (609)
.|+|.+|+++..+-.+.+-. ....|..-..+.-..|+.+.+-+++.+.-+.--.++...+-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 56777777777666555444 33445555566666777777777777776653344555555666666677777777777
Q ss_pred HHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHH
Q 037911 368 LYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISR-------DIYDYLIVALCQDNRPFAATSLLER 440 (609)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~ 440 (609)
++++.+.+. -+........++|.+.|++.....++.++.+.+.--+. .++..+++-....+..+.-...++.
T Consensus 176 v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 777666542 24556666777777777777777777777776654443 2444555544444443444445555
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCH
Q 037911 441 IGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDS 520 (609)
Q Consensus 441 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 520 (609)
.... .+.++..-..++.-+.++|+.++|.++..+..+++..|+ ...+ -.+.+-++.+.-++..++-.+. .+-++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~-~~~l~~~d~~~l~k~~e~~l~~-h~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRL-IPRLRPGDPEPLIKAAEKWLKQ-HPEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHH-HhhcCCCCchHHHHHHHHHHHh-CCCCh
Confidence 5222 345666777888889999999999999999988876555 2222 2345677888777777777663 34566
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 037911 521 QICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPN 589 (609)
Q Consensus 521 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 589 (609)
..+.+|...|.+.+.+.+|...|+...+. .|+...|+.+.+++.+.|+..+|.+.+++.+..-..|+
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 88899999999999999999999988776 78889999999999999999999999988875544444
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.5e-10 Score=110.31 Aligned_cols=462 Identities=16% Similarity=0.175 Sum_probs=280.6
Q ss_pred ChhhhhhhhhcCcCCCCChHHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHH
Q 037911 74 SHLTLLQNDLKPLLPHLGAHEISRVLLRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELV 153 (609)
Q Consensus 74 ~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 153 (609)
..+..+++.|+..+.+-..--+.++.+.+-|+-+.|....+...+ +...+..+|+.+.-.+....+|++|++.|..+.
T Consensus 25 kgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr--~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl 102 (700)
T KOG1156|consen 25 KGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLR--NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNAL 102 (700)
T ss_pred hHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhc--cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 345556777888888888888889889999999999999988875 456688999999999999999999999999999
Q ss_pred HhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 037911 154 ELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGR 233 (609)
Q Consensus 154 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 233 (609)
.. .+.+..++..+.- ...+.|+++.....-.++.+.. +.....|..+..+..-.|+...|..+.++..+
T Consensus 103 ~~---~~dN~qilrDlsl-------LQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~ 171 (700)
T KOG1156|consen 103 KI---EKDNLQILRDLSL-------LQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEK 171 (700)
T ss_pred hc---CCCcHHHHHHHHH-------HHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 75 4577888888766 6788999999998888888754 34455778888888888999999999998876
Q ss_pred CC-CCCCHHHHHHHH------HHHHHcCChHHHHHHHHHHHHcCCCCCHH-hHHHHHHHHHhcCCHhHHHHHHHHHhhCC
Q 037911 234 IG-ICPNTHTFNILT------HVFCKNGDVDKVNGFLEKIEEEGFDPDLV-TYNTLISSYCKKGRLNDAFYLYRIMYRRN 305 (609)
Q Consensus 234 ~~-~~~~~~~~~~l~------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 305 (609)
.. ..|+...+.... ....+.|.+++|.+.+...... ..|-. .-..-...+.+.++.++|..++..++..+
T Consensus 172 t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn 249 (700)
T KOG1156|consen 172 TQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN 249 (700)
T ss_pred hhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC
Confidence 53 246666554332 2344567777777776665433 12222 22334456677788888888888887764
Q ss_pred ccCCHhhHHH-HHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHH-HHHHHHcCChHHHHHHHHHHHHCCCccCHHH
Q 037911 306 VLPDLVTYTT-LMNGLCKEGKVREAH-QLFHRMVHRGLSPDIVSYNTL-IFAYCKEGKMQESKSLLYEMMGNGIYPDTFT 382 (609)
Q Consensus 306 ~~p~~~~~~~-ll~~~~~~~~~~~a~-~~~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 382 (609)
||...|.. +..++.+-.+.-++. .+|....+. .|....-..+ ++......-.+....++..+++.|+++-.
T Consensus 250 --Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf-- 323 (700)
T KOG1156|consen 250 --PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVF-- 323 (700)
T ss_pred --chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchh--
Confidence 44444443 333443333333333 555554443 1111111111 11111111123334455555666654422
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH--HHHHHHH
Q 037911 383 CQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIY--NELMESL 460 (609)
Q Consensus 383 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~ 460 (609)
..+...|-.....+ +++++.. .|...+. ..|. ....+ ...--+|....| -.++..+
T Consensus 324 -~dl~SLyk~p~k~~----~le~Lvt--------~y~~~L~---~~~~----f~~~D--~~~~E~PttllWt~y~laqh~ 381 (700)
T KOG1156|consen 324 -KDLRSLYKDPEKVA----FLEKLVT--------SYQHSLS---GTGM----FNFLD--DGKQEPPTTLLWTLYFLAQHY 381 (700)
T ss_pred -hhhHHHHhchhHhH----HHHHHHH--------HHHhhcc---cccC----CCccc--ccccCCchHHHHHHHHHHHHH
Confidence 22222221111111 1111100 0000000 0000 00000 000014444444 4466778
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 037911 461 CKCDSVADALLLKDEMVDRNIKPSLS-TYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKA 539 (609)
Q Consensus 461 ~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 539 (609)
-+.|+++.|..+.+..+++. |+.. -|..=.+.+...|++++|...+++..+.. .+|..+-.--+....+.++.++|
T Consensus 382 D~~g~~~~A~~yId~AIdHT--PTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA 458 (700)
T KOG1156|consen 382 DKLGDYEVALEYIDLAIDHT--PTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEA 458 (700)
T ss_pred HHcccHHHHHHHHHHHhccC--chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHH
Confidence 88888888888888887753 5443 34444477788889999998888888765 45666555667777788888888
Q ss_pred HHHHHHHHHcCC-CC----Ch-hcHHHH--HHHHHhcCCHHHHHHHHHHH
Q 037911 540 EALLGFFAKKFQ-IY----DT-ESYNAV--FNMFAEDGDLSKLMELQKRF 581 (609)
Q Consensus 540 ~~~~~~~~~~~~-~~----~~-~~~~~l--~~~~~~~g~~~~A~~~~~~m 581 (609)
.++.....+.|. .. +. -+|-.+ +.+|.++|++..|++-|...
T Consensus 459 ~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 459 EEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 888888887763 10 11 112222 35677788777776544443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.2e-10 Score=106.44 Aligned_cols=287 Identities=11% Similarity=0.083 Sum_probs=140.2
Q ss_pred HhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 037911 182 KVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNG 261 (609)
Q Consensus 182 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 261 (609)
..|++..|.+...+..+.+ +-....|..-..+--+.|+.+.+-..+.+..+.--.++...+-.........|+.+.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 4566666666666655544 222223333444455556666666666665543212333444444555555566666665
Q ss_pred HHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCH-------hhHHHHHHHHHhcCCHHHHHHHHH
Q 037911 262 FLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDL-------VTYTTLMNGLCKEGKVREAHQLFH 334 (609)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~ 334 (609)
-++++.+.+ +.+........++|.+.|++.....++..+.+.|.--+. .+|..+++-....+..+.-...|+
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 555555543 224445555556666666666666666666555543222 133333333333333333333333
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 037911 335 RMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSIS 414 (609)
Q Consensus 335 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 414 (609)
..... ..-+...-.+++.-+.+.|+.++|.++..+.. +.+.++.
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~L-----------------------------------k~~~D~~ 297 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDAL-----------------------------------KRQWDPR 297 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHH-----------------------------------HhccChh
Confidence 33222 12223333333444444444444444444444 4333322
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037911 415 RDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICC 494 (609)
Q Consensus 415 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 494 (609)
-...-.+.+-+++..-.+..++..... +.++..+.+|...|.+.+.|.+|.+.|+...+. .|+..+|+.+.++
T Consensus 298 ----L~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~ 370 (400)
T COG3071 298 ----LCRLIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADA 370 (400)
T ss_pred ----HHHHHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHH
Confidence 111112233344444444444443221 223355666666666666666666666655553 3666666666666
Q ss_pred HhcCCCHhHHHHHHHHHHH
Q 037911 495 FCGIGRSGEAVSLMDEMLE 513 (609)
Q Consensus 495 ~~~~g~~~~A~~~~~~~~~ 513 (609)
+.+.|+..+|.++.++...
T Consensus 371 ~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 371 LDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHcCChHHHHHHHHHHHH
Confidence 6666666666666666553
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.5e-12 Score=122.22 Aligned_cols=282 Identities=12% Similarity=0.033 Sum_probs=143.4
Q ss_pred ChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhc
Q 037911 141 KFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVG--FQPSIVSCNFLLNGLLKL 218 (609)
Q Consensus 141 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~ 218 (609)
+..+|...|+.+... .+....+...+.+ +|...+++++|.++|+.+.+.. ...+.+.|.+.+..+-+
T Consensus 334 ~~~~A~~~~~klp~h---~~nt~wvl~q~Gr-------ayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~- 402 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH---HYNTGWVLSQLGR-------AYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD- 402 (638)
T ss_pred HHHHHHHHHHhhHHh---cCCchHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh-
Confidence 344555555553322 2333344555555 5666666666666666655432 11244555555544322
Q ss_pred CChHHHHHHH-HHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHhHHHHHHHHHhcCCHhHHHH
Q 037911 219 NCIDQCWQVY-EEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDP-DLVTYNTLISSYCKKGRLNDAFY 296 (609)
Q Consensus 219 ~~~~~a~~~~-~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~ 296 (609)
+-++..+ +++... -+-.+.+|..+.++|.-+++.+.|++.|++..+. .| ...+|+.+..-+.....+|.|..
T Consensus 403 ---~v~Ls~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~ 476 (638)
T KOG1126|consen 403 ---EVALSYLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMK 476 (638)
T ss_pred ---hHHHHHHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHH
Confidence 1122222 122221 1234556666666666666666666666665554 22 44555555555556666666666
Q ss_pred HHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 037911 297 LYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGI 376 (609)
Q Consensus 297 ~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 376 (609)
.|+..+..... +-.+|..+...|.+.++++.|+-.|+...+.+ +-+.+....+...+-+.|+.++|+.+++++.....
T Consensus 477 ~fr~Al~~~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~ 554 (638)
T KOG1126|consen 477 SFRKALGVDPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP 554 (638)
T ss_pred HHHhhhcCCch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC
Confidence 66655543222 23334445555666666666666666655542 11334444445555566666666666666554432
Q ss_pred ccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037911 377 YPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQ 443 (609)
Q Consensus 377 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 443 (609)
+ |+..--..+..+...+++++|+..++++++.- +-+...+..+...|.+.|+.+.|..-|.-+.+
T Consensus 555 k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 555 K-NPLCKYHRASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred C-CchhHHHHHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 2 33333344445555566666666666665542 22344455555566666665666555554433
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.3e-12 Score=121.04 Aligned_cols=197 Identities=15% Similarity=0.033 Sum_probs=92.0
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHH
Q 037911 310 LVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSP-DIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQ 388 (609)
Q Consensus 310 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 388 (609)
..+|.++.++|.-.++.+.|++.|++..+. .| ...+|+.+..-+....++|.|...|+..+.... -+...|.-+.-
T Consensus 421 PesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~-rhYnAwYGlG~ 497 (638)
T KOG1126|consen 421 PESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP-RHYNAWYGLGT 497 (638)
T ss_pred cHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc-hhhHHHHhhhh
Confidence 345555555555555555555555555443 22 344444444444455555555555555443210 01122333344
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 037911 389 GYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVAD 468 (609)
Q Consensus 389 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 468 (609)
.|.+.++++.|.-.|+++.+.+ +.+.+....+...+-+.|+.++|+.++++....... ++..--.-+..+...+++++
T Consensus 498 vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~e 575 (638)
T KOG1126|consen 498 VYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVE 575 (638)
T ss_pred heeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHH
Confidence 4555555555555555555444 224444444445555555555555555555333322 22222223333444455555
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCCHhHHHHHHHHHHH
Q 037911 469 ALLLKDEMVDRNIKPS-LSTYRALICCFCGIGRSGEAVSLMDEMLE 513 (609)
Q Consensus 469 A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 513 (609)
|+..++++++. .|+ ...+..+...|.+.|+.+.|+.-|--|.+
T Consensus 576 al~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 576 ALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 55555555542 233 23344444555555555555555555543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.8e-10 Score=99.42 Aligned_cols=178 Identities=14% Similarity=0.159 Sum_probs=119.2
Q ss_pred CChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHh
Q 037911 104 SDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKV 183 (609)
Q Consensus 104 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 183 (609)
.|+..|..+++.... .+......+-..++..+.+.|++++|...+..+.+. .. .+..+...+.- .+.-.
T Consensus 36 rDytGAislLefk~~-~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~--~~~el~vnLAc-------c~FyL 104 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLN-LDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DD--APAELGVNLAC-------CKFYL 104 (557)
T ss_pred ccchhHHHHHHHhhc-cchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CC--CCcccchhHHH-------HHHHH
Confidence 588899999888773 333334456667888999999999999999988864 22 23333333333 56678
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 037911 184 GLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFL 263 (609)
Q Consensus 184 g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 263 (609)
|.+.+|..+-.+.. .++..-..|.+.-.+.++-++-..+.+.+... ...--+|.......-.+.+|++++
T Consensus 105 g~Y~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvY 174 (557)
T KOG3785|consen 105 GQYIEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVY 174 (557)
T ss_pred HHHHHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHH
Confidence 89999988776542 23333344556666778877777777766542 233334555555556788999999
Q ss_pred HHHHHcCCCCCHHhHHHHH-HHHHhcCCHhHHHHHHHHHhhC
Q 037911 264 EKIEEEGFDPDLVTYNTLI-SSYCKKGRLNDAFYLYRIMYRR 304 (609)
Q Consensus 264 ~~~~~~~~~~~~~~~~~li-~~~~~~g~~~~a~~~~~~~~~~ 304 (609)
..+... .|+-...|.-+ -+|.+..-++-+.++++-....
T Consensus 175 krvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 175 KRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred HHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 998876 45656666554 4666777778888887777654
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.51 E-value=8.5e-11 Score=117.23 Aligned_cols=432 Identities=12% Similarity=0.086 Sum_probs=246.3
Q ss_pred cCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHh
Q 037911 119 DLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLD 198 (609)
Q Consensus 119 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 198 (609)
..|+.|+..+|..+|.-|+..|+.+.|- +|.-|.- +..|....+|+.++. +..+.++.+.+.
T Consensus 18 ~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~--ksLpv~e~vf~~lv~-------sh~~And~Enpk-------- 79 (1088)
T KOG4318|consen 18 ISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEI--KSLPVREGVFRGLVA-------SHKEANDAENPK-------- 79 (1088)
T ss_pred HhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhc--ccccccchhHHHHHh-------cccccccccCCC--------
Confidence 4688999999999999999999999887 7766654 366788889999988 677778877775
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHH---HHHHHHHHh----hCCCC-CCHHHH-------------HHHHHHHHHcCChH
Q 037911 199 VGFQPSIVSCNFLLNGLLKLNCIDQ---CWQVYEEMG----RIGIC-PNTHTF-------------NILTHVFCKNGDVD 257 (609)
Q Consensus 199 ~~~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~m~----~~~~~-~~~~~~-------------~~l~~~~~~~g~~~ 257 (609)
.|...+|..|+.+|.+.|++.. +.+.++... ..|+- |..+.+ ...+....-.|-++
T Consensus 80 ---ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwa 156 (1088)
T KOG4318|consen 80 ---EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWA 156 (1088)
T ss_pred ---CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHH
Confidence 5888999999999999999755 222222221 12211 111110 11222233334444
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC-CHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037911 258 KVNGFLEKIEEEGFDPDLVTYNTLISSYCKKG-RLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRM 336 (609)
Q Consensus 258 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 336 (609)
.+++++..+....... + ...+++-..... .+++-..+.+...+ .|+..+|..+++.....|+++.|..++.+|
T Consensus 157 qllkll~~~Pvsa~~~-p--~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~em 230 (1088)
T KOG4318|consen 157 QLLKLLAKVPVSAWNA-P--FQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEM 230 (1088)
T ss_pred HHHHHHhhCCcccccc-h--HHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 4444444433221110 0 011122222211 22333322222222 478888888888888888888888888888
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHH-----------------
Q 037911 337 VHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSA----------------- 399 (609)
Q Consensus 337 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A----------------- 399 (609)
.+.|++.+.+-|-.|+-+ .++...+..+++-|.+.|+.|+..|+...+-.+..+|....+
T Consensus 231 ke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsa 307 (1088)
T KOG4318|consen 231 KEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSA 307 (1088)
T ss_pred HHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHH
Confidence 888888888877777765 677888888888888888888888877766665553321111
Q ss_pred -------HHHH------------HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCCHHHHHHHH
Q 037911 400 -------LNLV------------VELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQD---GYVPSLEIYNELM 457 (609)
Q Consensus 400 -------~~~~------------~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~ 457 (609)
.+.+ .+..-.|+.....+|........ .|+-++..++...+... -...++..|..++
T Consensus 308 a~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~h-Qgk~e~veqlvg~l~npt~r~s~~~V~a~~~~l 386 (1088)
T KOG4318|consen 308 ACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLRH-QGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALL 386 (1088)
T ss_pred HhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHHH-cCCCchHHHHHhhhcCCccccCcchHHHHHHHH
Confidence 1111 11111233334444443333322 45445555555555211 1112334444444
Q ss_pred HHHHhcCCHHHHHHHHH--HHHHC---------------CCCCCH----------------------------HHHHHHH
Q 037911 458 ESLCKCDSVADALLLKD--EMVDR---------------NIKPSL----------------------------STYRALI 492 (609)
Q Consensus 458 ~~~~~~g~~~~A~~~~~--~~~~~---------------~~~p~~----------------------------~~~~~li 492 (609)
.-|.+.-+..-...++. +.+.. ...||. ..-+.++
T Consensus 387 rqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~ 466 (1088)
T KOG4318|consen 387 RQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLH 466 (1088)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHH
Confidence 44433211111111110 00000 001111 1122333
Q ss_pred HHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC--CCChhcHHHHHHHHHhcCC
Q 037911 493 CCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQ--IYDTESYNAVFNMFAEDGD 570 (609)
Q Consensus 493 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~ 570 (609)
..++..-+..+++..-+.....- -+ ..|..|++-++...+.+.|..+.++...... ..|..-+..+.+.+.+.+.
T Consensus 467 l~l~se~n~lK~l~~~ekye~~l-f~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~ 543 (1088)
T KOG4318|consen 467 LTLNSEYNKLKILCDEEKYEDLL-FA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAI 543 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHH
Confidence 33444444444443333322211 11 4578888888888889999888887764322 3455668888899999999
Q ss_pred HHHHHHHHHHHHHc
Q 037911 571 LSKLMELQKRFLRL 584 (609)
Q Consensus 571 ~~~A~~~~~~m~~~ 584 (609)
..++.++++++.+.
T Consensus 544 l~dl~tiL~e~ks~ 557 (1088)
T KOG4318|consen 544 LYDLSTILYEDKSS 557 (1088)
T ss_pred HHHHHHHHhhhhHH
Confidence 99999999998863
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.3e-09 Score=100.91 Aligned_cols=426 Identities=14% Similarity=0.102 Sum_probs=264.7
Q ss_pred HHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 037911 136 LAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGL 215 (609)
Q Consensus 136 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 215 (609)
+...++|...+++.+.+++.. |...++....+- .+...|+-++|....+.....+ ..+.+.|..+.-.+
T Consensus 17 ~yE~kQYkkgLK~~~~iL~k~---~eHgeslAmkGL-------~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~ 85 (700)
T KOG1156|consen 17 CYETKQYKKGLKLIKQILKKF---PEHGESLAMKGL-------TLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHhHHHHHHHHHHhC---CccchhHHhccc-------hhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHH
Confidence 345567777788888887653 333343333333 5667888888888888777644 45666788777777
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHH
Q 037911 216 LKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAF 295 (609)
Q Consensus 216 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 295 (609)
....++++|++.|......+ +.|...+.-+.-.-++.|+++.....-....+.. +.....|..+..++.-.|+...|.
T Consensus 86 R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~ 163 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMAL 163 (700)
T ss_pred hhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888888888887754 4456677766666677788777777766666552 224556777778888888888888
Q ss_pred HHHHHHhhCC-ccCCHhhHHHHH------HHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCChHHHHHH
Q 037911 296 YLYRIMYRRN-VLPDLVTYTTLM------NGLCKEGKVREAHQLFHRMVHRGLSPDIV-SYNTLIFAYCKEGKMQESKSL 367 (609)
Q Consensus 296 ~~~~~~~~~~-~~p~~~~~~~ll------~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~ 367 (609)
.++++..+.. -.|+...|.... ....+.|..++|.+.+..-... ..|.. .-..-...+.+.+++++|..+
T Consensus 164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~ 241 (700)
T KOG1156|consen 164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKV 241 (700)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHH
Confidence 8888887653 234544443322 3445677788888777665543 12222 223445566788888999999
Q ss_pred HHHHHHCCCccCHHHHHHHHH-HHHccCCHHHHH-HHHHHHHHCCCCCCHHHHHHH-HHHHHhcCChHHHHHHHHHHHhC
Q 037911 368 LYEMMGNGIYPDTFTCQIIVQ-GYGKEGRLLSAL-NLVVELQRFGVSISRDIYDYL-IVALCQDNRPFAATSLLERIGQD 444 (609)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~ 444 (609)
+..++.. .||...|...+. ++.+-.+..+++ .+|....+.- |.......+ +..+....-.+.....+......
T Consensus 242 y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y--~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~K 317 (700)
T KOG1156|consen 242 YRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY--PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSK 317 (700)
T ss_pred HHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC--cccccchhccHHHhCcchhHHHHHHHHHHHhhc
Confidence 9888876 466655555444 443344444444 5555554431 111111111 11111111123333455556666
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCC----------CCCCHHHHH--HHHHHHhcCCCHhHHHHHH
Q 037911 445 GYVPSLEIYNELMESLCKCDSVADALLLKDEMV----DRN----------IKPSLSTYR--ALICCFCGIGRSGEAVSLM 508 (609)
Q Consensus 445 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~----------~~p~~~~~~--~li~~~~~~g~~~~A~~~~ 508 (609)
|+++ ++..+...|-.-...+-..++.-.+. ..| -.|....|. .++..+-+.|+++.|..++
T Consensus 318 g~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yI 394 (700)
T KOG1156|consen 318 GVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYI 394 (700)
T ss_pred CCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 6553 23333333322221111111111111 111 135555554 4567788999999999999
Q ss_pred HHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037911 509 DEMLESGMLPDS-QICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGF 586 (609)
Q Consensus 509 ~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 586 (609)
+.+++ ..|+. ..|..-.+.+...|++++|..+++...+.. .+|...=..-+.-..++++.++|.++.....+.|.
T Consensus 395 d~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 395 DLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 99995 45664 456677788999999999999999998664 44554444667777889999999999999988775
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.4e-08 Score=96.76 Aligned_cols=452 Identities=13% Similarity=0.103 Sum_probs=287.8
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCH
Q 037911 126 SSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSI 205 (609)
Q Consensus 126 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 205 (609)
+..|...+..+..+|+...-+..|+.++... .......++.-.+. .....|-.+-++.++++.++. ++
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraL-pvtqH~rIW~lyl~-------Fv~~~~lPets~rvyrRYLk~----~P 169 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRAL-PVTQHDRIWDLYLK-------FVESHGLPETSIRVYRRYLKV----AP 169 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-chHhhccchHHHHH-------HHHhCCChHHHHHHHHHHHhc----CH
Confidence 4466677777888888888888888888662 22344556666665 556777788899999998873 34
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCC------CCCCHHHHHHHHHHHHHcCChH---HHHHHHHHHHHcCCCCC--
Q 037911 206 VSCNFLLNGLLKLNCIDQCWQVYEEMGRIG------ICPNTHTFNILTHVFCKNGDVD---KVNGFLEKIEEEGFDPD-- 274 (609)
Q Consensus 206 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~------~~~~~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~-- 274 (609)
..-+-.+..+++.+++++|-+.+....... .+.+-..|.-+.+...+.-+.- ....++..+... -+|
T Consensus 170 ~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~ 247 (835)
T KOG2047|consen 170 EAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQL 247 (835)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHH
Confidence 446777888889999999998888875422 1334455665555555543322 233344444432 344
Q ss_pred HHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhc----------------C------CHHHHHHH
Q 037911 275 LVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKE----------------G------KVREAHQL 332 (609)
Q Consensus 275 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~----------------~------~~~~a~~~ 332 (609)
...|.+|.+.|.+.|.+++|.++|++....- .+..-|+.+.+.|+.- + +++-.+.-
T Consensus 248 g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~ 325 (835)
T KOG2047|consen 248 GFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMAR 325 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHH
Confidence 3468999999999999999999999887642 2344455555544321 1 12333344
Q ss_pred HHHHHHCCC-----------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccC------HHHHHHHHHHHHccCC
Q 037911 333 FHRMVHRGL-----------SPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPD------TFTCQIIVQGYGKEGR 395 (609)
Q Consensus 333 ~~~m~~~g~-----------~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~ 395 (609)
|+.+...+. +.++..|..-+.. ..|+..+....+.++.+. +.|. ...|..+.+.|-..|+
T Consensus 326 ~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~ 402 (835)
T KOG2047|consen 326 FESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGD 402 (835)
T ss_pred HHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCc
Confidence 444443310 1123333333322 356777778888887764 3332 2457888889999999
Q ss_pred HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-----------------CHHHHHH
Q 037911 396 LLSALNLVVELQRFGVSIS---RDIYDYLIVALCQDNRPFAATSLLERIGQDGYVP-----------------SLEIYNE 455 (609)
Q Consensus 396 ~~~A~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----------------~~~~~~~ 455 (609)
++.|..+|++..+...+-- ..+|......-.+..+++.|.++++......-.| +...|..
T Consensus 403 l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~ 482 (835)
T KOG2047|consen 403 LDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSM 482 (835)
T ss_pred HHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHH
Confidence 9999999999888754422 3455555566667778888888888873322111 2345666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHc--
Q 037911 456 LMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPD-SQICRVLINGYCM-- 532 (609)
Q Consensus 456 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~-- 532 (609)
.++..-..|-++....+|+++++..+ .++........-+-...-++++.+.|++-+..--.|+ ..+|+..+.-+.+
T Consensus 483 y~DleEs~gtfestk~vYdriidLri-aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ry 561 (835)
T KOG2047|consen 483 YADLEESLGTFESTKAVYDRIIDLRI-ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRY 561 (835)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHh
Confidence 66666677888999999999988765 2333222222334456678899999988776422343 3456666666554
Q ss_pred -cCCHHHHHHHHHHHHHcCCCCChh--cHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh--hhHHHHHHH
Q 037911 533 -EKDVNKAEALLGFFAKKFQIYDTE--SYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNN--LTCKYMIHS 599 (609)
Q Consensus 533 -~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~ 599 (609)
..+++.|..+|+++.+ +++|... .|-.....=-+.|....|++++++.... +.+.. ..||+.|.-
T Consensus 562 gg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~k 631 (835)
T KOG2047|consen 562 GGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKK 631 (835)
T ss_pred cCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHH
Confidence 2468999999999997 5555432 2333333334578888999999997643 44442 456766653
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1e-07 Score=92.56 Aligned_cols=472 Identities=10% Similarity=0.068 Sum_probs=303.8
Q ss_pred hcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHH
Q 037911 101 RCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAY 180 (609)
Q Consensus 101 ~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 180 (609)
-.+++...-...|+.++......--...|-..+......+-.+.+..+++..++. .+..-...+. .+
T Consensus 113 ~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~------~P~~~eeyie-------~L 179 (835)
T KOG2047|consen 113 IKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV------APEAREEYIE-------YL 179 (835)
T ss_pred HhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc------CHHHHHHHHH-------HH
Confidence 3456666677777777765544445566777788888888888888888888865 2223444555 67
Q ss_pred HHhCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCChH---HHHHHHHHHhhCCCCCC--HHHHHHHHHH
Q 037911 181 VKVGLIRESFKTFRKTLDVG------FQPSIVSCNFLLNGLLKLNCID---QCWQVYEEMGRIGICPN--THTFNILTHV 249 (609)
Q Consensus 181 ~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~~~~~---~a~~~~~~m~~~~~~~~--~~~~~~l~~~ 249 (609)
++.++.++|-+.+...+... .+.+-..|+-+-+...++.+.- ....+++.+..+ -+| ...|++|...
T Consensus 180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADY 257 (835)
T ss_pred HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHH
Confidence 79999999999998876422 2445556777777776654433 234455555442 345 4678999999
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc----------------C------CHhHHHHHHHHHhhCCc-
Q 037911 250 FCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKK----------------G------RLNDAFYLYRIMYRRNV- 306 (609)
Q Consensus 250 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------------g------~~~~a~~~~~~~~~~~~- 306 (609)
|.+.|.+++|..+|++.... ..++.-|..+.++|+.- | +++-.+.-|+.+.+...
T Consensus 258 YIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~ 335 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPL 335 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccch
Confidence 99999999999999998765 23444444444444421 1 12223333444433211
Q ss_pred ----------cCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHHcCChHHHHHHHHH
Q 037911 307 ----------LPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPD------IVSYNTLIFAYCKEGKMQESKSLLYE 370 (609)
Q Consensus 307 ----------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~ 370 (609)
.-++..|..-.. +..|+..+....+.+..+. +.|. ...|..+...|-..|+++.|..+|++
T Consensus 336 ~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifek 412 (835)
T KOG2047|consen 336 LLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEK 412 (835)
T ss_pred HHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 112333333222 3356677888888888775 3332 24678888999999999999999999
Q ss_pred HHHCCCccC---HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC-----------------CHHHHHHHHHHHHhcCC
Q 037911 371 MMGNGIYPD---TFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSI-----------------SRDIYDYLIVALCQDNR 430 (609)
Q Consensus 371 ~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----------------~~~~~~~ll~~~~~~~~ 430 (609)
..+-..+-- ..+|..-...=.+..+++.|+++.+......-.+ +...|...++..-..|-
T Consensus 413 a~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gt 492 (835)
T KOG2047|consen 413 ATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGT 492 (835)
T ss_pred hhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 987532211 2345555555667888999999988876643221 12345566666667788
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhc---CCCHhHHHH
Q 037911 431 PFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSL-STYRALICCFCG---IGRSGEAVS 506 (609)
Q Consensus 431 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~li~~~~~---~g~~~~A~~ 506 (609)
++....+++++.+..+. ++...-.....+-.+.-++++.++|++-+..-..|+. ..|+..+.-+.+ ...++.|..
T Consensus 493 festk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRd 571 (835)
T KOG2047|consen 493 FESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARD 571 (835)
T ss_pred HHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 78888888988766544 3333333333455567788999998876665444555 457776655443 357899999
Q ss_pred HHHHHHHCCCCCCHHHHHHH--HHHHHccCCHHHHHHHHHHHHHcCCCCCh--hcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037911 507 LMDEMLESGMLPDSQICRVL--INGYCMEKDVNKAEALLGFFAKKFQIYDT--ESYNAVFNMFAEDGDLSKLMELQKRFL 582 (609)
Q Consensus 507 ~~~~~~~~~~~p~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~ 582 (609)
+|+++++ |.+|...-+.-| ...--+.|-...|..++++.... ..+.. ..||..|.--...=-.....++|++++
T Consensus 572 LFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaI 649 (835)
T KOG2047|consen 572 LFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAI 649 (835)
T ss_pred HHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Confidence 9999998 776654432222 23333568889999999997754 22222 568887765544333556678888888
Q ss_pred HcCCCCChhhHHHHH
Q 037911 583 RLGFAPNNLTCKYMI 597 (609)
Q Consensus 583 ~~g~~p~~~~~~~ll 597 (609)
+. -||...-.+.|
T Consensus 650 e~--Lp~~~~r~mcl 662 (835)
T KOG2047|consen 650 ES--LPDSKAREMCL 662 (835)
T ss_pred Hh--CChHHHHHHHH
Confidence 55 67766655544
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=8e-11 Score=104.11 Aligned_cols=226 Identities=11% Similarity=0.074 Sum_probs=186.0
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDK 258 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (609)
.|.+.|.+.+|.+.|+..++. .|-+.+|..|-.+|.+..+...|+.++.+-.+. ++-|+....-+.+.+-..++.++
T Consensus 232 CylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~~~~~ 308 (478)
T KOG1129|consen 232 CYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAMEQQED 308 (478)
T ss_pred HHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHHhHHH
Confidence 799999999999999998875 577888999999999999999999999998774 33344444567778888899999
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037911 259 VNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVH 338 (609)
Q Consensus 259 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 338 (609)
|.++++...+.. +.++.....+...|.-.++.+-|+..|+++++.|+. +...|+.+.-+|.-.+++|-++.-|.+...
T Consensus 309 a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAls 386 (478)
T KOG1129|consen 309 ALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALS 386 (478)
T ss_pred HHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHh
Confidence 999999988763 345667777777888889999999999999999987 888899998888889999999999998887
Q ss_pred CCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 037911 339 RGLSPD--IVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFG 410 (609)
Q Consensus 339 ~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 410 (609)
.-..|+ ..+|..+.......||+..|.+.|+-.+.++. -+...++.|.-.-.+.|++++|..++.......
T Consensus 387 tat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 387 TATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-QHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred hccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc-chHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 644444 35677777778888999999999998887642 256778888888889999999999998877654
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.7e-10 Score=119.15 Aligned_cols=258 Identities=10% Similarity=0.066 Sum_probs=177.4
Q ss_pred CChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchh--HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 037911 140 NKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNW--AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLK 217 (609)
Q Consensus 140 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 217 (609)
+.+++|...|+++++. .|.....+..+..++..... .+...+++++|...++++++.+ +.+..++..+..++..
T Consensus 275 ~~~~~A~~~~~~Al~l---dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~ 350 (553)
T PRK12370 275 YSLQQALKLLTQCVNM---SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTI 350 (553)
T ss_pred HHHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 4578899999999876 44555555444332211100 1224567899999999999876 5677888888888889
Q ss_pred cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHH
Q 037911 218 LNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYL 297 (609)
Q Consensus 218 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 297 (609)
.|++++|...|++..+.+ +.+...+..+...+...|++++|...+++..+.... +...+..++..+...|++++|+..
T Consensus 351 ~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 351 HSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred ccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHH
Confidence 999999999999998864 345677888888999999999999999999887422 223334445556778899999999
Q ss_pred HHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHC-C
Q 037911 298 YRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPD-IVSYNTLIFAYCKEGKMQESKSLLYEMMGN-G 375 (609)
Q Consensus 298 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~ 375 (609)
+++..+....-+...+..+...+...|+.++|...+.++... .|+ ....+.+...|+..| +.|...++.+.+. .
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~ 504 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQ 504 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhh
Confidence 999876532224555777888888999999999999887654 334 334455555667666 4777777776653 1
Q ss_pred CccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 037911 376 IYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFG 410 (609)
Q Consensus 376 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 410 (609)
..+....+ +-..+.-.|+.+.+..+ +++.+.+
T Consensus 505 ~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 505 RIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 12222222 33344555666666655 7776654
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.5e-10 Score=114.81 Aligned_cols=219 Identities=10% Similarity=0.034 Sum_probs=158.9
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHH
Q 037911 217 KLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFY 296 (609)
Q Consensus 217 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 296 (609)
..+++++|...+++..+.+ +.+...+..+...+...|++++|...+++..+.+ +.+...+..+...+...|++++|+.
T Consensus 316 ~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~ 393 (553)
T PRK12370 316 KQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQ 393 (553)
T ss_pred cchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4567899999999998864 4467788888889999999999999999999875 3356778888999999999999999
Q ss_pred HHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 037911 297 LYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGI 376 (609)
Q Consensus 297 ~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 376 (609)
.+++..+.++. +...+..++..+...|++++|...++++.+...+-+...+..+..++...|+.++|...+.++...
T Consensus 394 ~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~-- 470 (553)
T PRK12370 394 TINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ-- 470 (553)
T ss_pred HHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--
Confidence 99999987654 333334445557778999999999999887532224555777888888999999999999998765
Q ss_pred ccC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037911 377 YPD-TFTCQIIVQGYGKEGRLLSALNLVVELQRFG-VSISRDIYDYLIVALCQDNRPFAATSLLERIGQDG 445 (609)
Q Consensus 377 ~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 445 (609)
.|+ ....+.+...|...| ++|...++.+.+.. ..+.. +......+.-.|+ .+...+++++.+.+
T Consensus 471 ~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~--~~~~~~~~~~~g~-~~~~~~~~~~~~~~ 536 (553)
T PRK12370 471 EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNN--PGLLPLVLVAHGE-AIAEKMWNKFKNED 536 (553)
T ss_pred cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcC--chHHHHHHHHHhh-hHHHHHHHHhhccc
Confidence 333 344555666677777 47777777765531 11111 1124445555666 44444457775544
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.7e-11 Score=116.85 Aligned_cols=273 Identities=14% Similarity=0.148 Sum_probs=165.2
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 037911 192 TFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGF 271 (609)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 271 (609)
++-.+...|+.|+.++|..++.-||..|+.+.|- +|.-|.-...+.+...|+.++.+....++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 3445555666677777777777777777766666 6666665555666666666666666666655554
Q ss_pred CCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHH
Q 037911 272 DPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMV-HRGLSPDIVSYNT 350 (609)
Q Consensus 272 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-~~g~~p~~~~~~~ 350 (609)
.|...+|..|..+|...||+.. |+...+ -...+...+...|.......++..+. ..+..||..+
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n--- 144 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN--- 144 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---
Confidence 4556667777777776666544 222221 11122333444444444444443322 1234445433
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 037911 351 LIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKE-GRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDN 429 (609)
Q Consensus 351 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 429 (609)
.+....-.|.++.+++++..+...... .+ ....++-+... ..+++-..+.+...+ .+++.+|..++.+-...|
T Consensus 145 ~illlv~eglwaqllkll~~~Pvsa~~-~p--~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag 218 (1088)
T KOG4318|consen 145 AILLLVLEGLWAQLLKLLAKVPVSAWN-AP--FQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAG 218 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCccccc-ch--HHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcC
Confidence 333344556677777776555322111 11 11123333322 234444444444333 478888888888888888
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCC
Q 037911 430 RPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGR 500 (609)
Q Consensus 430 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 500 (609)
+.+.|..++.+|.+.|++.+..-|..|+-+ .++..-++.+.+.|.+.|+.|+..|+...+..+..+|.
T Consensus 219 ~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 219 DVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred chhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 888888888889888888888777777655 67788888888888888888888888877776666555
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.4e-08 Score=99.63 Aligned_cols=45 Identities=13% Similarity=0.154 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHH
Q 037911 535 DVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKR 580 (609)
Q Consensus 535 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 580 (609)
=+++|.++++-+.... ..+..+|..-...|.+.|++--|++.+.+
T Consensus 472 PLe~A~kfl~pL~~~a-~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 472 PLEEAMKFLKPLLELA-PDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHHHHHHHHHHHHhC-ccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 4677888887777663 33557788888888888888777776553
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-08 Score=97.41 Aligned_cols=446 Identities=13% Similarity=0.061 Sum_probs=279.7
Q ss_pred hcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhC---CCCCcH-H------hH----
Q 037911 101 RCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVK---DCPHSV-D------VF---- 166 (609)
Q Consensus 101 ~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~-~------~~---- 166 (609)
-..+++..|....+.-. -...+..+....+.++.+..+|++|..++........ ..+.+. . ..
T Consensus 60 ~~~~~y~ra~~lit~~~---le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~ 136 (611)
T KOG1173|consen 60 YLGRQYERAAHLITTYK---LEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLM 136 (611)
T ss_pred HhhhHHHHHHHHHHHhh---hhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCccccccc
Confidence 34456666666654432 2355788888889999999999999998873211100 001110 0 00
Q ss_pred HHH-hhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC----CCCHH
Q 037911 167 QDL-ISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGI----CPNTH 241 (609)
Q Consensus 167 ~~l-~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~----~~~~~ 241 (609)
..+ ...+-.-+-.|.....+++|...|.++.. .|+..+..+...... ..-.+.+.++-+..... .-+..
T Consensus 137 ~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~----~D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e 210 (611)
T KOG1173|consen 137 INLESSICYLRGKVYVALDNREEARDKYKEALL----ADAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVE 210 (611)
T ss_pred ccchhceeeeeeehhhhhccHHHHHHHHHHHHh----cchhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHH
Confidence 000 00000000167777778888888888765 333333333222111 11122222222222111 11222
Q ss_pred HHHHHHHHH-HHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHH
Q 037911 242 TFNILTHVF-CKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGL 320 (609)
Q Consensus 242 ~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~ 320 (609)
....+.... ++.-+ +.....-++-.-.+..-+......-..-+...+++.+.+++++...+..+ +....+..-|.++
T Consensus 211 ~l~~lyel~~~k~~n-~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dp-fh~~~~~~~ia~l 288 (611)
T KOG1173|consen 211 RLEILYELKLCKNRN-EESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDP-FHLPCLPLHIACL 288 (611)
T ss_pred HHHHHHHhhhhhhcc-ccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCC-CCcchHHHHHHHH
Confidence 222222211 11100 01111111111112344556666666777888999999999999887643 3555666667788
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccC-HHHHHHHHHHHHccCCHHHH
Q 037911 321 CKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPD-TFTCQIIVQGYGKEGRLLSA 399 (609)
Q Consensus 321 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A 399 (609)
...|+..+-..+=..+.+. .+....+|-++...|...|+..+|.+.|.+.... .|. ...|-.....|.-.|..++|
T Consensus 289 ~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQA 365 (611)
T KOG1173|consen 289 YELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQA 365 (611)
T ss_pred HHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHH
Confidence 8888888777777777776 3445678888888888889999999999887754 222 35688888999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037911 400 LNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDR 479 (609)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 479 (609)
+..+...-+.- +-...-+-.+.--|.+.++..-|.+.|....... +.|+...+-+.-.....+.+.+|..+|+..+..
T Consensus 366 maaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ 443 (611)
T KOG1173|consen 366 MAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEV 443 (611)
T ss_pred HHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHH
Confidence 99888776642 1122223334445677788888888888876543 557778888887777789999999999887632
Q ss_pred --CC---CC-CHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC
Q 037911 480 --NI---KP-SLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIY 553 (609)
Q Consensus 480 --~~---~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 553 (609)
.+ ++ -..+++.|.++|.+.+.+++|+..+++.+... +-+..++.++.-.|...|+++.|.+.|.+.... .|
T Consensus 444 ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p 520 (611)
T KOG1173|consen 444 IKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALAL--KP 520 (611)
T ss_pred hhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CC
Confidence 11 11 33567888899999999999999999998753 557888999999999999999999999988855 67
Q ss_pred ChhcHHHHHHHH
Q 037911 554 DTESYNAVFNMF 565 (609)
Q Consensus 554 ~~~~~~~l~~~~ 565 (609)
|-.+-..++..+
T Consensus 521 ~n~~~~~lL~~a 532 (611)
T KOG1173|consen 521 DNIFISELLKLA 532 (611)
T ss_pred ccHHHHHHHHHH
Confidence 665555555433
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.8e-10 Score=103.12 Aligned_cols=198 Identities=15% Similarity=0.077 Sum_probs=102.8
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCH
Q 037911 126 SSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSI 205 (609)
Q Consensus 126 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 205 (609)
...+..++..+...|++++|...++++++. .|.+...+..+.. .|...|++++|.+.+++..+.. +.+.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~-------~~~~~~~~~~A~~~~~~al~~~-~~~~ 99 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEH---DPDDYLAYLALAL-------YYQQLGELEKAEDSFRRALTLN-PNNG 99 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcccHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHhhC-CCCH
Confidence 455566666666666676666666666654 2344455555554 5666666666666666666543 3344
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 037911 206 VSCNFLLNGLLKLNCIDQCWQVYEEMGRIGI-CPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISS 284 (609)
Q Consensus 206 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 284 (609)
..+..+...+...|++++|.+.+++...... ......+..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 100 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 178 (234)
T TIGR02521 100 DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAEL 178 (234)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHH
Confidence 4555555666666666666666666554211 1122334444445555555555555555554432 1123344444455
Q ss_pred HHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037911 285 YCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRM 336 (609)
Q Consensus 285 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 336 (609)
+...|++++|...+++..+.. ..+...+..+...+...|+.++|..+.+.+
T Consensus 179 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 179 YYLRGQYKDARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 555555555555555544431 113333334444444445555554444443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.7e-10 Score=110.16 Aligned_cols=261 Identities=19% Similarity=0.184 Sum_probs=163.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHC-----CC-c
Q 037911 311 VTYTTLMNGLCKEGKVREAHQLFHRMVHR-----GL-SPDIV-SYNTLIFAYCKEGKMQESKSLLYEMMGN-----GI-Y 377 (609)
Q Consensus 311 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----g~-~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~-~ 377 (609)
.+...+...|...|+++.|+.+++...+. |. .|... ..+.+...|...+++++|..+|++++.. |- .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 44555667777777777777777766543 21 12222 2233556677777777777777776542 11 1
Q ss_pred c-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHH
Q 037911 378 P-DTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSL-EIYNE 455 (609)
Q Consensus 378 ~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ 455 (609)
| -..+++.|..+|.+.|++++|..+++...+ ++++... ...|.+ ..++.
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~----------------------------I~~~~~~-~~~~~v~~~l~~ 330 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALE----------------------------IYEKLLG-ASHPEVAAQLSE 330 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHH----------------------------HHHHhhc-cChHHHHHHHHH
Confidence 1 124456666667777777777766644332 2222110 111222 23455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHhcCCCHhHHHHHHHHHHHCC----C--CC-CHH
Q 037911 456 LMESLCKCDSVADALLLKDEMVDR---NIKPS----LSTYRALICCFCGIGRSGEAVSLMDEMLESG----M--LP-DSQ 521 (609)
Q Consensus 456 l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~--~p-~~~ 521 (609)
++..++..+++++|..+++...+. -+.++ ..+++.|...|...|++++|.+++++++... - .+ ...
T Consensus 331 ~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~ 410 (508)
T KOG1840|consen 331 LAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGK 410 (508)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhH
Confidence 666677778888888887765532 11222 3468888899999999999999998887631 1 11 245
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHc----CC-CCCh-hcHHHHHHHHHhcCCHHHHHHHHHHHHH---c---CCCCC
Q 037911 522 ICRVLINGYCMEKDVNKAEALLGFFAKK----FQ-IYDT-ESYNAVFNMFAEDGDLSKLMELQKRFLR---L---GFAPN 589 (609)
Q Consensus 522 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~---~---g~~p~ 589 (609)
.++.+...|.+.+++.+|.++|...... |. .|++ .+|..|+..|...|++++|.++.+.... . +..|+
T Consensus 411 ~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~ 490 (508)
T KOG1840|consen 411 PLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPT 490 (508)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 6788888999999988888888754432 22 3444 5788999999999999999999887762 1 24555
Q ss_pred hhhHHHHHHHH
Q 037911 590 NLTCKYMIHSL 600 (609)
Q Consensus 590 ~~~~~~ll~~~ 600 (609)
..........+
T Consensus 491 ~~~~~~~~~~~ 501 (508)
T KOG1840|consen 491 VEDEKLRLADL 501 (508)
T ss_pred hhHHHHhhhHH
Confidence 55555444443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.8e-08 Score=92.93 Aligned_cols=28 Identities=7% Similarity=0.213 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 037911 242 TFNILTHVFCKNGDVDKVNGFLEKIEEE 269 (609)
Q Consensus 242 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 269 (609)
+...-...+.+.|++++|..+|+.+.+.
T Consensus 112 ll~L~AQvlYrl~~ydealdiY~~L~kn 139 (652)
T KOG2376|consen 112 LLELRAQVLYRLERYDEALDIYQHLAKN 139 (652)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3333444455555555555555555443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.2e-10 Score=101.53 Aligned_cols=199 Identities=12% Similarity=0.088 Sum_probs=122.3
Q ss_pred HHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHH
Q 037911 163 VDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHT 242 (609)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 242 (609)
...+..+.. .|...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...
T Consensus 31 ~~~~~~la~-------~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~ 101 (234)
T TIGR02521 31 AKIRVQLAL-------GYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDV 101 (234)
T ss_pred HHHHHHHHH-------HHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHH
Confidence 444555555 6777788888888887777653 3456666677777777777777777777776643 334556
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHH
Q 037911 243 FNILTHVFCKNGDVDKVNGFLEKIEEEGFD-PDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLC 321 (609)
Q Consensus 243 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~ 321 (609)
+..+...+...|++++|.+.+++....... .....+..+...+...|++++|.+.+++..+.... +...+..+...+.
T Consensus 102 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~ 180 (234)
T TIGR02521 102 LNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYY 180 (234)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHH
Confidence 666666777777777777777776654211 12334555556666666666666666666654322 3445555666666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 037911 322 KEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMM 372 (609)
Q Consensus 322 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 372 (609)
..|++++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+.
T Consensus 181 ~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 181 LRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 666666666666666554 22344444455555556666666666555544
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.5e-09 Score=92.56 Aligned_cols=426 Identities=12% Similarity=0.073 Sum_probs=266.6
Q ss_pred HHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037911 134 HILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLN 213 (609)
Q Consensus 134 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 213 (609)
.-+...+++..|+.+++--.........+...| +.- .|...|++++|+..+..+.+.. .++...+..|..
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lW--ia~-------C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAc 99 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLW--IAH-------CYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLAC 99 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHH--HHH-------HHHhhccHHHHHHHHHHHhccC-CCCcccchhHHH
Confidence 334556788999998877664311111222222 222 6889999999999999988754 677777777887
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhH
Q 037911 214 GLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLND 293 (609)
Q Consensus 214 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 293 (609)
.+.-.|.+.+|..+-.+.. .+.-.-..|++.-.+.++-++...+.+.+.+. ..---+|.+.....-.+++
T Consensus 100 c~FyLg~Y~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQe 169 (557)
T KOG3785|consen 100 CKFYLGQYIEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQE 169 (557)
T ss_pred HHHHHHHHHHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHH
Confidence 7778899999998876642 34445556677777888887777777666542 2223344455555567899
Q ss_pred HHHHHHHHhhCCccCCHhhHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCChHHHHHHH---
Q 037911 294 AFYLYRIMYRRNVLPDLVTYTT-LMNGLCKEGKVREAHQLFHRMVHRGLSPDIV-SYNTLIFAYCKEGKMQESKSLL--- 368 (609)
Q Consensus 294 a~~~~~~~~~~~~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~--- 368 (609)
|+++|+.....+ |+-...|. +.-+|.+..-++-+.++++-..+. .||.. ..|.......+.=+-..|..-.
T Consensus 170 AIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~l 245 (557)
T KOG3785|consen 170 AIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKEL 245 (557)
T ss_pred HHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHH
Confidence 999999998763 34444444 334566777788888888887775 44543 3333332222221111111111
Q ss_pred -----------HHHHHCCC------------ccC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 037911 369 -----------YEMMGNGI------------YPD-----TFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDY 420 (609)
Q Consensus 369 -----------~~~~~~~~------------~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 420 (609)
+.+.+++. -|. +..-..|+-.|.+.++.++|..+.+++.- .++.-|-.
T Consensus 246 adN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P----ttP~Eyil 321 (557)
T KOG3785|consen 246 ADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP----TTPYEYIL 321 (557)
T ss_pred HhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC----CChHHHHH
Confidence 12222210 011 12223445557889999999998877542 23333322
Q ss_pred HHHHHHhcCC-------hHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037911 421 LIVALCQDNR-------PFAATSLLERIGQDGYVPSL-EIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALI 492 (609)
Q Consensus 421 ll~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 492 (609)
-.-.+...|+ ..-|...|+-...++..-|. .--..+..++.-..++++++-+++.+...-...|...+ .+.
T Consensus 322 Kgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~A 400 (557)
T KOG3785|consen 322 KGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLA 400 (557)
T ss_pred HHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHH
Confidence 2223333333 23344455555444443332 22344556666678899999999888876443444444 467
Q ss_pred HHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChh-cHHHHHHHHHhcCCH
Q 037911 493 CCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTE-SYNAVFNMFAEDGDL 571 (609)
Q Consensus 493 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~ 571 (609)
.+++..|++.+|.++|-.+....++.+......|.++|.+.++.+.|.+++-++.. ..+.. ....+..-|.+.|.+
T Consensus 401 QAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eF 477 (557)
T KOG3785|consen 401 QAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEF 477 (557)
T ss_pred HHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999987665565555557788999999999999887755441 22333 344455778899999
Q ss_pred HHHHHHHHHHHHcCCCCChhhH
Q 037911 572 SKLMELQKRFLRLGFAPNNLTC 593 (609)
Q Consensus 572 ~~A~~~~~~m~~~g~~p~~~~~ 593 (609)
--|.+.|+.+... .|+..-|
T Consensus 478 yyaaKAFd~lE~l--DP~pEnW 497 (557)
T KOG3785|consen 478 YYAAKAFDELEIL--DPTPENW 497 (557)
T ss_pred HHHHHhhhHHHcc--CCCcccc
Confidence 9999999998854 5655554
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.6e-07 Score=83.48 Aligned_cols=309 Identities=15% Similarity=0.073 Sum_probs=220.3
Q ss_pred CCCHHhHHHHHH--HHHhcCCHhHHHHHHHHHhhCC-ccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-H
Q 037911 272 DPDLVTYNTLIS--SYCKKGRLNDAFYLYRIMYRRN-VLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIV-S 347 (609)
Q Consensus 272 ~~~~~~~~~li~--~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~ 347 (609)
.|...+....+. +.+..++-..|...+-.+.... ..-|+.....+.+.+...|+.++|...|+..... .|+.. .
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~ 268 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEA 268 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--Chhhhhh
Confidence 333333333443 3344555555555554444332 3346777888999999999999999999988764 33322 1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 037911 348 YNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQ 427 (609)
Q Consensus 348 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 427 (609)
.......+.+.|+.++...+...+.... .-+...|-.-+......+++..|+.+.++..+.+. -+...+-.-...+..
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~ 346 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIA 346 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHh
Confidence 2222233457788888888888776542 12334455555566678899999999999887752 345556666678889
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHhc-CCCHhHHH
Q 037911 428 DNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALI-CCFCG-IGRSGEAV 505 (609)
Q Consensus 428 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li-~~~~~-~g~~~~A~ 505 (609)
.+++.+|.-.|+...... +-+..+|..|+.+|...|++.+|.-.-+..... ...+..+.+.+. ..+.. -.--++|.
T Consensus 347 ~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred ccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHH
Confidence 999999999999886543 457889999999999999999999887776643 224556666553 33333 33447899
Q ss_pred HHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037911 506 SLMDEMLESGMLPDS-QICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRL 584 (609)
Q Consensus 506 ~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 584 (609)
++++...+ +.|+. ...+.+...|...|..+.++.+++..... .+|....+.|.+.+...+.+++|...|...+..
T Consensus 425 kf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 425 KFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 99999885 45664 35677888899999999999999998876 889999999999999999999999999999844
Q ss_pred CCCCChhh
Q 037911 585 GFAPNNLT 592 (609)
Q Consensus 585 g~~p~~~~ 592 (609)
.|+...
T Consensus 501 --dP~~~~ 506 (564)
T KOG1174|consen 501 --DPKSKR 506 (564)
T ss_pred --CccchH
Confidence 565543
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.9e-12 Score=83.62 Aligned_cols=50 Identities=24% Similarity=0.487 Sum_probs=47.7
Q ss_pred CChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHhc
Q 037911 553 YDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMIHSLWK 602 (609)
Q Consensus 553 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 602 (609)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+++|++|||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999986
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.8e-10 Score=98.38 Aligned_cols=234 Identities=12% Similarity=0.020 Sum_probs=165.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 037911 349 NTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQD 428 (609)
Q Consensus 349 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 428 (609)
+.+..+|.+.|.+.+|.+.++..++. .|-+.||..|-+.|.+..+++.|+.++.+-.+.- +-++....-+.+.+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 56677777777777777777777665 4566677777777777777777777777766652 23444444556667777
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHH
Q 037911 429 NRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLM 508 (609)
Q Consensus 429 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 508 (609)
++.+++.++++...+.. +.++.....+...|.-.++.+.|+.+|+++.+.|+ -++..|..+.-+|.-.+++|-++..|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 77778888887775553 44566666666677777888888888888888776 56677777777777788888888888
Q ss_pred HHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037911 509 DEMLESGMLPD--SQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGF 586 (609)
Q Consensus 509 ~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 586 (609)
+++...--.|+ ..+|-.+.......||+..|.+.|+...... .-+...++.|.-.-.+.|++++|..++..... +
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s--~ 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS--V 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh--h
Confidence 88776543343 3456667777778888888888888777542 22346778887777788888888888887763 3
Q ss_pred CCCh
Q 037911 587 APNN 590 (609)
Q Consensus 587 ~p~~ 590 (609)
.|+.
T Consensus 459 ~P~m 462 (478)
T KOG1129|consen 459 MPDM 462 (478)
T ss_pred Cccc
Confidence 5553
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.3e-08 Score=101.54 Aligned_cols=129 Identities=17% Similarity=0.135 Sum_probs=101.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037911 452 IYNELMESLCKCDSVADALLLKDEMVDRNIKPS-LSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGY 530 (609)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 530 (609)
++..+...|-..|++++|+++.++.+++. |+ +..|..-...+.+.|++++|.+.++.+.... .-|..+-+-.+..+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHH
Confidence 44666788889999999999999999865 55 5667777889999999999999999999876 34777778888999
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCChh------c--HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037911 531 CMEKDVNKAEALLGFFAKKFQIYDTE------S--YNAVFNMFAEDGDLSKLMELQKRFLR 583 (609)
Q Consensus 531 ~~~g~~~~A~~~~~~~~~~~~~~~~~------~--~~~l~~~~~~~g~~~~A~~~~~~m~~ 583 (609)
.+.|++++|.+++....+.+..|-.. . ....+.+|.+.|++..|++.|....+
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999988766422211 1 24456789999999999876665543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.5e-09 Score=101.46 Aligned_cols=249 Identities=18% Similarity=0.202 Sum_probs=141.3
Q ss_pred CCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhC-----C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 037911 159 CPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDV-----G-FQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMG 232 (609)
Q Consensus 159 ~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 232 (609)
.|.-..++..+.. .|...|++++|+.+++..++. | ..|.+.+.
T Consensus 195 ~P~~~~~~~~La~-------~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~------------------------ 243 (508)
T KOG1840|consen 195 DPERLRTLRNLAE-------MYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASM------------------------ 243 (508)
T ss_pred CchHHHHHHHHHH-------HHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHH------------------------
Confidence 3555556666666 899999999999999988763 1 01111111
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-----CCC-C-CHHhHHHHHHHHHhcCCHhHHHHHHHHHhhC-
Q 037911 233 RIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEE-----GFD-P-DLVTYNTLISSYCKKGRLNDAFYLYRIMYRR- 304 (609)
Q Consensus 233 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~-~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~- 304 (609)
.+.+...|...+++++|..+|+++... |-. | -..+++.|..+|.+.|++++|...+++..+.
T Consensus 244 ----------l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~ 313 (508)
T KOG1840|consen 244 ----------LNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIY 313 (508)
T ss_pred ----------HHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 112344444445555555544444321 111 1 1234555555566666655555555444321
Q ss_pred ----Cc-cCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 037911 305 ----NV-LPDL-VTYTTLMNGLCKEGKVREAHQLFHRMVHR---GLSP----DIVSYNTLIFAYCKEGKMQESKSLLYEM 371 (609)
Q Consensus 305 ----~~-~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---g~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~ 371 (609)
+. .|.+ ..++.+...++..+++++|..+++...+. -..+ -..+++.|...|...|++++|.++++++
T Consensus 314 ~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~a 393 (508)
T KOG1840|consen 314 EKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKA 393 (508)
T ss_pred HHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 11 1122 23455666777778888888777765442 0111 2356788888888888888888888877
Q ss_pred HHCC----C--cc-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037911 372 MGNG----I--YP-DTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQD 444 (609)
Q Consensus 372 ~~~~----~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 444 (609)
+... - .+ ....++.|...|.+.+++.+|..+|.+... +. .....
T Consensus 394 i~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~----------------------------i~-~~~g~ 444 (508)
T KOG1840|consen 394 IQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD----------------------------IM-KLCGP 444 (508)
T ss_pred HHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH----------------------------HH-HHhCC
Confidence 6431 1 11 123455566666666666666666643321 22 11112
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037911 445 GYVPSLEIYNELMESLCKCDSVADALLLKDEMV 477 (609)
Q Consensus 445 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 477 (609)
+.+....+|..|...|.+.|++++|+++.+.+.
T Consensus 445 ~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 445 DHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred CCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 223345677888888888888888888877665
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.4e-08 Score=94.89 Aligned_cols=406 Identities=13% Similarity=0.036 Sum_probs=240.7
Q ss_pred CcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH
Q 037911 161 HSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNT 240 (609)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 240 (609)
.+..+|..+.- +....|+++.+-+.|++.... .-.....|+.+...+...|.-..|..++++-....-.|+.
T Consensus 321 nd~ai~d~Lt~-------al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~ 392 (799)
T KOG4162|consen 321 NDAAIFDHLTF-------ALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSD 392 (799)
T ss_pred chHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCc
Confidence 45666666655 677778888888888777652 2344556777777777777777777777765443222333
Q ss_pred H-HHHHHHHHHHH-cCChHHHHHHHHHHHHc--CC--CCCHHhHHHHHHHHHhc-----------CCHhHHHHHHHHHhh
Q 037911 241 H-TFNILTHVFCK-NGDVDKVNGFLEKIEEE--GF--DPDLVTYNTLISSYCKK-----------GRLNDAFYLYRIMYR 303 (609)
Q Consensus 241 ~-~~~~l~~~~~~-~g~~~~a~~~~~~~~~~--~~--~~~~~~~~~li~~~~~~-----------g~~~~a~~~~~~~~~ 303 (609)
. .+-..-..|.+ .+.+++++.+-.+.... +. ......|..+.-+|... ....++++.+++..+
T Consensus 393 ~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~ 472 (799)
T KOG4162|consen 393 ISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ 472 (799)
T ss_pred chHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh
Confidence 3 33323333333 25566666665555541 11 12233444444444321 124667777777776
Q ss_pred CCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCccCHHH
Q 037911 304 RNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGN-GIYPDTFT 382 (609)
Q Consensus 304 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~ 382 (609)
.+.. |......+.--|+..++++.|.+..++..+.+-.-+...|..|.-.+...+++.+|+.+.+...+. |. |...
T Consensus 473 ~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l 549 (799)
T KOG4162|consen 473 FDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVL 549 (799)
T ss_pred cCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhh
Confidence 5443 222222333445667778888888888777655556777777777777777888888777766543 11 1111
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHC----------------------------CCCCCHHHHHHHHHHHHhcCChHHH
Q 037911 383 CQIIVQGYGKEGRLLSALNLVVELQRF----------------------------GVSISRDIYDYLIVALCQDNRPFAA 434 (609)
Q Consensus 383 ~~~l~~~~~~~~~~~~A~~~~~~~~~~----------------------------~~~~~~~~~~~ll~~~~~~~~~~~a 434 (609)
...-+..-..-++.++|+.....+... ...-...++..+.......+. .+
T Consensus 550 ~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~--~~ 627 (799)
T KOG4162|consen 550 MDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLK--SA 627 (799)
T ss_pred chhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhh--hc
Confidence 111111112234444443332222110 011112233333222221111 11
Q ss_pred HHHHHHHHhCCCC--CC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHH
Q 037911 435 TSLLERIGQDGYV--PS------LEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVS 506 (609)
Q Consensus 435 ~~~~~~~~~~~~~--~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 506 (609)
..-.. +...... |+ ...|......+.+.+..++|...+.+..... ......|......+...|..++|.+
T Consensus 628 ~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~ 705 (799)
T KOG4162|consen 628 GSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKE 705 (799)
T ss_pred ccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHH
Confidence 00000 1111111 22 3355666777888899999988888776642 2345567777777888999999999
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHH--HHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037911 507 LMDEMLESGMLPD-SQICRVLINGYCMEKDVNKAEA--LLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLR 583 (609)
Q Consensus 507 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 583 (609)
.|..+... .|+ .....++..++.+.|+..-|.. ++..+.+.+ +.+...|..+...+.+.|+.+.|.+.|....+
T Consensus 706 af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 706 AFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 99999864 454 5577899999999998777777 999998775 55778999999999999999999999998875
Q ss_pred c
Q 037911 584 L 584 (609)
Q Consensus 584 ~ 584 (609)
.
T Consensus 783 L 783 (799)
T KOG4162|consen 783 L 783 (799)
T ss_pred h
Confidence 4
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.3e-11 Score=81.09 Aligned_cols=47 Identities=51% Similarity=0.882 Sum_probs=19.8
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037911 309 DLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAY 355 (609)
Q Consensus 309 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 355 (609)
|..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.1e-07 Score=85.40 Aligned_cols=445 Identities=15% Similarity=0.116 Sum_probs=253.9
Q ss_pred cCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHH
Q 037911 102 CQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYV 181 (609)
Q Consensus 102 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 181 (609)
..+++++|++..+.+.. ..+.+...+..-+-++.+.+.|++|.++.+.-... .......|.-.- ...
T Consensus 24 ~~~e~e~a~k~~~Kil~--~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~---~~~~~~~fEKAY--------c~Y 90 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILS--IVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL---LVINSFFFEKAY--------CEY 90 (652)
T ss_pred cchHHHHHHHHHHHHHh--cCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh---hhcchhhHHHHH--------HHH
Confidence 45789999999998885 23556777777788899999999998654432211 001111122221 567
Q ss_pred HhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChHHHH
Q 037911 182 KVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICP-NTHTFNILTHVFCKNGDVDKVN 260 (609)
Q Consensus 182 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~ 260 (609)
+.++.++|+..++-.. +.+..+...-...+-+.|++++|..+|+.+.+.+.+. +...-..++.+ +-.-.+.
T Consensus 91 rlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~----~a~l~~~ 162 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV----AAALQVQ 162 (652)
T ss_pred HcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH----HHhhhHH
Confidence 9999999999998322 2334466666778889999999999999998765321 11111122211 1101111
Q ss_pred HHHHHHHHcCCCCC--HHhHHHHHHHHHhcCCHhHHHHHHHHHhhCC-------------ccCCH-hhHHHHHHHHHhcC
Q 037911 261 GFLEKIEEEGFDPD--LVTYNTLISSYCKKGRLNDAFYLYRIMYRRN-------------VLPDL-VTYTTLMNGLCKEG 324 (609)
Q Consensus 261 ~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-------------~~p~~-~~~~~ll~~~~~~~ 324 (609)
+.+.. ...|+ -..+-.....+...|++.+|+++++...+.+ +.-.. ..-..|.-.+-..|
T Consensus 163 -~~q~v---~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~G 238 (652)
T KOG2376|consen 163 -LLQSV---PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQG 238 (652)
T ss_pred -HHHhc---cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhc
Confidence 12222 22221 2223333456778999999999999883211 11011 11234455667889
Q ss_pred CHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCChH-HHHHHHHHHHHC-----------CCccCHHHHHHHHH
Q 037911 325 KVREAHQLFHRMVHRGLSPDI----VSYNTLIFAYCKEGKMQ-ESKSLLYEMMGN-----------GIYPDTFTCQIIVQ 388 (609)
Q Consensus 325 ~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~-~A~~~~~~~~~~-----------~~~~~~~~~~~l~~ 388 (609)
+.++|..++...++... +|. +.-|.|+..-....-++ .++..++..... .-.-...--+.++.
T Consensus 239 qt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~ 317 (652)
T KOG2376|consen 239 QTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLA 317 (652)
T ss_pred chHHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998753 343 23344443321111111 122222222111 00001111122222
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 037911 389 GYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALC--QDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSV 466 (609)
Q Consensus 389 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 466 (609)
.|. +..+.+.++...... ......+..++.... +...+..+..++....+........+....+......|++
T Consensus 318 l~t--nk~~q~r~~~a~lp~---~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~ 392 (652)
T KOG2376|consen 318 LFT--NKMDQVRELSASLPG---MSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNP 392 (652)
T ss_pred HHh--hhHHHHHHHHHhCCc---cCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCH
Confidence 222 223333333322211 222334444444332 2234567777777775554444456667777888889999
Q ss_pred HHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHC--CCCCCHHHH----HHHHHHHHc
Q 037911 467 ADALLLKD--------EMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLES--GMLPDSQIC----RVLINGYCM 532 (609)
Q Consensus 467 ~~A~~~~~--------~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~----~~l~~~~~~ 532 (609)
+.|.+++. .+.+.+..|- +...+...+.+.++.+.|..++.+++.. .-.+..... ..++..-.+
T Consensus 393 ~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr 470 (652)
T KOG2376|consen 393 EVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLR 470 (652)
T ss_pred HHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHh
Confidence 99999998 5555444444 4455666677778877788888777642 112222333 333333446
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHH
Q 037911 533 EKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRF 581 (609)
Q Consensus 533 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 581 (609)
.|+.++|..+++++.+.. ++|..+..-++.+|++. +.+.|..+-+.+
T Consensus 471 ~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 471 HGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred cCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 799999999999999753 66778888888888876 567777665544
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.9e-08 Score=93.82 Aligned_cols=196 Identities=13% Similarity=0.038 Sum_probs=100.3
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCH
Q 037911 126 SSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSI 205 (609)
Q Consensus 126 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 205 (609)
+..|..+..++...|++++|...|+++++. .|.....+..+.. .|...|++++|+..|++.++.. +.+.
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l---~P~~~~a~~~lg~-------~~~~~g~~~~A~~~~~~Al~l~-P~~~ 132 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALAL---RPDMADAYNYLGI-------YLTQAGNFDAAYEAFDSVLELD-PTYN 132 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc---CCCCHHHHHHHHH-------HHHHCCCHHHHHHHHHHHHHhC-CCCH
Confidence 344666666666667777776666666654 3455566666665 6666677777777666666643 3345
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 037911 206 VSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSY 285 (609)
Q Consensus 206 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 285 (609)
.+|..+..++...|++++|.+.|++..+. .|+..........+...++.++|...+++..... .++...+ .+ ..
T Consensus 133 ~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~~--~~ 206 (296)
T PRK11189 133 YAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-NI--VE 206 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-HH--HH
Confidence 55666666666666666666666666553 2332211111222233455666666665543321 2222111 11 12
Q ss_pred HhcCCHhHHHHHHHHHhh---CCc--cC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037911 286 CKKGRLNDAFYLYRIMYR---RNV--LP-DLVTYTTLMNGLCKEGKVREAHQLFHRMVHR 339 (609)
Q Consensus 286 ~~~g~~~~a~~~~~~~~~---~~~--~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 339 (609)
...|+...+ +.++.+.+ ..+ .| ...+|..+...+.+.|++++|...|++..+.
T Consensus 207 ~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 207 FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 223343332 23333321 111 00 1234555556666666666666666666554
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.4e-07 Score=90.06 Aligned_cols=273 Identities=10% Similarity=0.026 Sum_probs=152.1
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCC
Q 037911 125 TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPS 204 (609)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 204 (609)
....|..+...+...|+.+++.+.+....+..+.............. .+...|++++|.+.+++..+.. +.+
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~-------~~~~~g~~~~A~~~~~~~l~~~-P~~ 76 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEAL-------SAWIAGDLPKALALLEQLLDDY-PRD 76 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHHHC-CCc
Confidence 35566666667777777777777776666553322222222211122 5677888888888888887753 344
Q ss_pred HHHHHH---HHHHHHhcCChHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHH
Q 037911 205 IVSCNF---LLNGLLKLNCIDQCWQVYEEMGRIGICPN-THTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNT 280 (609)
Q Consensus 205 ~~~~~~---ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 280 (609)
...+.. ........+..+.+.+.++... ...|+ ......+...+...|++++|...+++..+.. +.+...+..
T Consensus 77 ~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~ 153 (355)
T cd05804 77 LLALKLHLGAFGLGDFSGMRDHVARVLPLWA--PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHA 153 (355)
T ss_pred HHHHHHhHHHHHhcccccCchhHHHHHhccC--cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHH
Confidence 444442 1111122344555555554411 12233 3444456667778888888888888888764 334566777
Q ss_pred HHHHHHhcCCHhHHHHHHHHHhhCCcc-CCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHH
Q 037911 281 LISSYCKKGRLNDAFYLYRIMYRRNVL-PDL--VTYTTLMNGLCKEGKVREAHQLFHRMVHRGL-SPDIVSY-N--TLIF 353 (609)
Q Consensus 281 li~~~~~~g~~~~a~~~~~~~~~~~~~-p~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~-~--~li~ 353 (609)
+..++...|++++|...+++....... |+. ..|..+...+...|++++|..++++...... .+..... + .++.
T Consensus 154 la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 233 (355)
T cd05804 154 VAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLW 233 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHH
Confidence 778888888888888888887764321 222 2345677778888888888888888754321 1111111 1 2222
Q ss_pred HHHHcCChHHHHHH--HHHHHHCCC--ccCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 037911 354 AYCKEGKMQESKSL--LYEMMGNGI--YPDTFTCQIIVQGYGKEGRLLSALNLVVELQR 408 (609)
Q Consensus 354 ~~~~~g~~~~A~~~--~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 408 (609)
-+...|....+.++ +........ ............++...|+.++|..++..+..
T Consensus 234 ~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~ 292 (355)
T cd05804 234 RLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKG 292 (355)
T ss_pred HHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 33334433333332 111111000 00111222445556667777777777766654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.6e-07 Score=91.87 Aligned_cols=409 Identities=13% Similarity=0.051 Sum_probs=246.2
Q ss_pred CCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCC
Q 037911 122 IKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGF 201 (609)
Q Consensus 122 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~ 201 (609)
+.-++..|..+.-++.+.|+|..+.+.|++.... .-.....|..+.. .|...|.-..|+.+++......-
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~---~~~~~e~w~~~al-------s~saag~~s~Av~ll~~~~~~~~ 388 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF---SFGEHERWYQLAL-------SYSAAGSDSKAVNLLRESLKKSE 388 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh---hhhhHHHHHHHHH-------HHHHhccchHHHHHHHhhccccc
Confidence 3446677777777777888888888888777643 2234455555555 67777777788888777665443
Q ss_pred CC-CHHHHHHHHHHHHh-cCChHHHHHHHHHHhhC--CC--CCCHHHHHHHHHHHHHc-----------CChHHHHHHHH
Q 037911 202 QP-SIVSCNFLLNGLLK-LNCIDQCWQVYEEMGRI--GI--CPNTHTFNILTHVFCKN-----------GDVDKVNGFLE 264 (609)
Q Consensus 202 ~~-~~~~~~~ll~~~~~-~~~~~~a~~~~~~m~~~--~~--~~~~~~~~~l~~~~~~~-----------g~~~~a~~~~~ 264 (609)
.| ++..+-..-..|.+ .+.+++++++-.+.... +. ......|..+.-+|... ....++++.++
T Consensus 389 ~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale 468 (799)
T KOG4162|consen 389 QPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALE 468 (799)
T ss_pred CCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHH
Confidence 33 44444444444443 35566666555555441 11 12233444444444321 22457777777
Q ss_pred HHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC
Q 037911 265 KIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHR-GLSP 343 (609)
Q Consensus 265 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~~p 343 (609)
+..+.+.. |+.+...+.--|+..++++.|.+..++..+.+..-+...|..|.-.+...+++.+|+.+.+...+. |.
T Consensus 469 ~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~-- 545 (799)
T KOG4162|consen 469 EAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD-- 545 (799)
T ss_pred HHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--
Confidence 77766422 333333334456677788888888888877755557777877777777888888888877776543 11
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC---------------------C-------CccCHHHHHHHHHHHHccCC
Q 037911 344 DIVSYNTLIFAYCKEGKMQESKSLLYEMMGN---------------------G-------IYPDTFTCQIIVQGYGKEGR 395 (609)
Q Consensus 344 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------------------~-------~~~~~~~~~~l~~~~~~~~~ 395 (609)
|......-+..-...++.++++.....++.- | ..-...++..+...... +
T Consensus 546 N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~--~ 623 (799)
T KOG4162|consen 546 NHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS--Q 623 (799)
T ss_pred hhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh--h
Confidence 1111111111112234444444433332210 0 00011222222211110 0
Q ss_pred HHHHHHHHHHHHHCCCC--CC------HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 037911 396 LLSALNLVVELQRFGVS--IS------RDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVA 467 (609)
Q Consensus 396 ~~~A~~~~~~~~~~~~~--~~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 467 (609)
.+.+..-.. +...-.. |+ ...+......+.+.+..+++...+.+..... +-....|......+...|.++
T Consensus 624 ~~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~ 701 (799)
T KOG4162|consen 624 LKSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLE 701 (799)
T ss_pred hhhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhH
Confidence 000000000 1111111 12 2234455567778888788888887775443 556777888888888999999
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCCHhHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 037911 468 DALLLKDEMVDRNIKPS-LSTYRALICCFCGIGRSGEAVS--LMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLG 544 (609)
Q Consensus 468 ~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 544 (609)
+|.+.|......+ |+ +.....+..++.+.|+..-|.. ++.++.+.+ +.+...|-.+...+.+.|+.+.|.+.|.
T Consensus 702 EA~~af~~Al~ld--P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 702 EAKEAFLVALALD--PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQ 778 (799)
T ss_pred HHHHHHHHHHhcC--CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHH
Confidence 9999999888754 54 4678888999999999888888 999999876 5678899999999999999999999999
Q ss_pred HHHHcC
Q 037911 545 FFAKKF 550 (609)
Q Consensus 545 ~~~~~~ 550 (609)
...+..
T Consensus 779 aa~qLe 784 (799)
T KOG4162|consen 779 AALQLE 784 (799)
T ss_pred HHHhhc
Confidence 887654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.8e-08 Score=83.57 Aligned_cols=199 Identities=15% Similarity=0.081 Sum_probs=160.4
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDK 258 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (609)
.|...|++..|..-++++++.+ +.+..+|..+...|.+.|+.+.|.+-|++..... +-+..+.|.-...+|..|++++
T Consensus 44 ~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg~~~e 121 (250)
T COG3063 44 GYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQGRPEE 121 (250)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCCChHH
Confidence 7999999999999999999875 5567788889999999999999999999988753 4567888888889999999999
Q ss_pred HHHHHHHHHHcCCC-CCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037911 259 VNGFLEKIEEEGFD-PDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMV 337 (609)
Q Consensus 259 a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 337 (609)
|...|++......- --..+|..+.-+..+.|+.+.|.+.|++.++.... ...+...+.....+.|++-.|...++...
T Consensus 122 A~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~ 200 (250)
T COG3063 122 AMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYLERYQ 200 (250)
T ss_pred HHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 99999998875221 22457888888888999999999999998887554 45566778888889999999999998888
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHH
Q 037911 338 HRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTC 383 (609)
Q Consensus 338 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 383 (609)
..+. ++..+.-..|..-...|+-+.+-++=..+... .|...-|
T Consensus 201 ~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~ 243 (250)
T COG3063 201 QRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEY 243 (250)
T ss_pred hccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHH
Confidence 7765 78888878888888889988888777666654 4554443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.3e-08 Score=92.04 Aligned_cols=221 Identities=13% Similarity=0.091 Sum_probs=141.4
Q ss_pred CCChhHHHHHHHHHHHhhCCCCC-cHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 037911 139 NNKFSFAMKMLCELVELVKDCPH-SVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLK 217 (609)
Q Consensus 139 ~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 217 (609)
.+..+.++..+.+++...+..+. ....+..+.. .|.+.|+.++|+..|++.++.. +.+...|+.+...+..
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~-------~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~ 110 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGV-------LYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQ 110 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHH-------HHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 34556677777777754222222 2345555555 7888899999999998888865 5567888888888888
Q ss_pred cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHH
Q 037911 218 LNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYL 297 (609)
Q Consensus 218 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 297 (609)
.|++++|.+.|++..+.. +-+..++..+..++...|++++|.+.++...+. .|+..............++.++|...
T Consensus 111 ~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~ 187 (296)
T PRK11189 111 AGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKEN 187 (296)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHH
Confidence 999999999888887742 234667777888888888999998888888876 34332222222334456778888888
Q ss_pred HHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CC--C-CCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 037911 298 YRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHR---GL--S-PDIVSYNTLIFAYCKEGKMQESKSLLYEM 371 (609)
Q Consensus 298 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---g~--~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 371 (609)
|++..... .|+...+ .+ .....|+..++ +.+..+.+. .. . .....|..+...+.+.|++++|...|++.
T Consensus 188 l~~~~~~~-~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~A 262 (296)
T PRK11189 188 LKQRYEKL-DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLA 262 (296)
T ss_pred HHHHHhhC-CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 86655332 2222222 22 22334554443 344444422 10 1 12346777777777888888888888887
Q ss_pred HHCC
Q 037911 372 MGNG 375 (609)
Q Consensus 372 ~~~~ 375 (609)
++.+
T Consensus 263 l~~~ 266 (296)
T PRK11189 263 LANN 266 (296)
T ss_pred HHhC
Confidence 7653
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.3e-06 Score=75.11 Aligned_cols=305 Identities=10% Similarity=0.010 Sum_probs=215.5
Q ss_pred CCCCHHHHHHHHHHHHHc--CChHHHHHHHHHHHHc-CCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhh
Q 037911 236 ICPNTHTFNILTHVFCKN--GDVDKVNGFLEKIEEE-GFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVT 312 (609)
Q Consensus 236 ~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 312 (609)
++|+..+....+.+++.. ++-..+...+-.+... -++-|+.....+...+...|+.++|+..|++..-.++. +...
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~ 268 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEA 268 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhh
Confidence 445555555555555544 4444444444433333 23556778889999999999999999999998765332 2222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHc
Q 037911 313 YTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGK 392 (609)
Q Consensus 313 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 392 (609)
...-.-.+.+.|+.+....+...+.... .-....|-.-........+++.|+.+-++.++.+ +.+...+-.-...+..
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~ 346 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIA 346 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHh
Confidence 2222334567888888888877776541 1223334334444556788999999999888653 2245556666778889
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH-HHH-HhcCCHHHHH
Q 037911 393 EGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELM-ESL-CKCDSVADAL 470 (609)
Q Consensus 393 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~-~~~g~~~~A~ 470 (609)
.|+.++|.-.|+..+... +.+...|.-++..|...|++.+|...-...... ++.+..+...+. ..+ ..-.--++|.
T Consensus 347 ~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred ccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHH
Confidence 999999999999988875 357889999999999999999998877665332 244555555552 222 2233457888
Q ss_pred HHHHHHHHCCCCCCH-HHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 037911 471 LLKDEMVDRNIKPSL-STYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKK 549 (609)
Q Consensus 471 ~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 549 (609)
++++..... .|+. .+.+.+...+...|+.++++.++++... ..||....+.|.+.+...+.+.+|.+.|......
T Consensus 425 kf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 425 KFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 888887764 3664 3456666788899999999999999985 4789999999999999999999999999988865
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.4e-07 Score=87.29 Aligned_cols=304 Identities=13% Similarity=0.069 Sum_probs=177.2
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCC-HHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHH---
Q 037911 93 HEISRVLLRCQSDSVSALTFFNWVKNDLEIKPT-SSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQD--- 168 (609)
Q Consensus 93 ~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~--- 168 (609)
...++.+....+++..+.+.+..+........+ ..........+...|++++|.+.++++++. .|.+...+..
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~---~P~~~~a~~~~~~ 85 (355)
T cd05804 9 HAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD---YPRDLLALKLHLG 85 (355)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHhHH
Confidence 344455555566777766666666543322333 233334455667889999999999988876 3444444331
Q ss_pred HhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 037911 169 LISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTH 248 (609)
Q Consensus 169 l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 248 (609)
... .....|....+.+.++... ...+........+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 86 ~~~-------~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~ 156 (355)
T cd05804 86 AFG-------LGDFSGMRDHVARVLPLWA-PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAH 156 (355)
T ss_pred HHH-------hcccccCchhHHHHHhccC-cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 111 1123455555555555421 1222333444556678888999999999999998864 445677888888
Q ss_pred HHHHcCChHHHHHHHHHHHHcCC-CCCH--HhHHHHHHHHHhcCCHhHHHHHHHHHhhCCc-cCCHhhH-H--HHHHHHH
Q 037911 249 VFCKNGDVDKVNGFLEKIEEEGF-DPDL--VTYNTLISSYCKKGRLNDAFYLYRIMYRRNV-LPDLVTY-T--TLMNGLC 321 (609)
Q Consensus 249 ~~~~~g~~~~a~~~~~~~~~~~~-~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~-~--~ll~~~~ 321 (609)
++...|++++|...+++...... .++. ..|..+...+...|++++|+.++++...... .+..... + .++..+.
T Consensus 157 i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 236 (355)
T cd05804 157 VLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLE 236 (355)
T ss_pred HHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHH
Confidence 99999999999999998876532 1222 2455677888999999999999999864332 1112111 1 2233333
Q ss_pred hcCCHHHHHHH--HHHHHHCCCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCcc--------CHHHHHHHHHH
Q 037911 322 KEGKVREAHQL--FHRMVHRGLS--PDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYP--------DTFTCQIIVQG 389 (609)
Q Consensus 322 ~~~~~~~a~~~--~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--------~~~~~~~l~~~ 389 (609)
..|..+.+.++ .......... ...........++...|+.++|..+++.+....... .........-.
T Consensus 237 ~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~ 316 (355)
T cd05804 237 LAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALY 316 (355)
T ss_pred hcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHH
Confidence 44433333332 1111111101 111122245666778899999999998886532110 11111222234
Q ss_pred HHccCCHHHHHHHHHHHHH
Q 037911 390 YGKEGRLLSALNLVVELQR 408 (609)
Q Consensus 390 ~~~~~~~~~A~~~~~~~~~ 408 (609)
+...|+.++|++.+.....
T Consensus 317 ~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 317 AFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5677888888888776654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.1e-06 Score=82.15 Aligned_cols=406 Identities=16% Similarity=0.062 Sum_probs=222.9
Q ss_pred hcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHH
Q 037911 101 RCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAY 180 (609)
Q Consensus 101 ~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 180 (609)
-..||++.|+..|..++.- .++|...|.--..+|+..|+|++|.+=-.+.++. .|..+..|..... ++
T Consensus 13 ~s~~d~~~ai~~~t~ai~l--~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l---~p~w~kgy~r~Ga-------a~ 80 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIML--SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL---NPDWAKGYSRKGA-------AL 80 (539)
T ss_pred cccccHHHHHHHHHHHHcc--CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc---CCchhhHHHHhHH-------HH
Confidence 3457888888888888752 2347777878888888888888887765555544 5667788888887 78
Q ss_pred HHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC-hHHH
Q 037911 181 VKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGD-VDKV 259 (609)
Q Consensus 181 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~-~~~a 259 (609)
.-.|++++|+..|.+-++.. +.+...++.+..++ ..+.+. +.. .-+...+..+..--...+- .+.+
T Consensus 81 ~~lg~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~----~~~~~~-----~~~---~~~p~~~~~l~~~p~t~~~~~~~~ 147 (539)
T KOG0548|consen 81 FGLGDYEEAILAYSEGLEKD-PSNKQLKTGLAQAY----LEDYAA-----DQL---FTKPYFHEKLANLPLTNYSLSDPA 147 (539)
T ss_pred HhcccHHHHHHHHHHHhhcC-CchHHHHHhHHHhh----hHHHHh-----hhh---ccCcHHHHHhhcChhhhhhhccHH
Confidence 88888888888888887754 44455556666655 111111 111 1122222222211100000 1111
Q ss_pred H-HHHHHHHHcCCCCCHHhHH---HHHHHHHhcCCHhHH-HHHHHHHh-hCCccC---------C-------------Hh
Q 037911 260 N-GFLEKIEEEGFDPDLVTYN---TLISSYCKKGRLNDA-FYLYRIMY-RRNVLP---------D-------------LV 311 (609)
Q Consensus 260 ~-~~~~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~a-~~~~~~~~-~~~~~p---------~-------------~~ 311 (609)
. .+++.+... +-++..|. .++.+.......+.- +..-..+. ..+..| . ..
T Consensus 148 ~~~~l~~~~~~--p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~ 225 (539)
T KOG0548|consen 148 YVKILEIIQKN--PTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAH 225 (539)
T ss_pred HHHHHHHhhcC--cHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhh
Confidence 1 222222211 11111111 122211111000000 00000000 000111 0 11
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHH-------H
Q 037911 312 TYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTC-------Q 384 (609)
Q Consensus 312 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-------~ 384 (609)
-...+.++..+..+++.|.+.+....+.. -+..-++....+|...|.+.+....-+...+.|.. ....| .
T Consensus 226 ~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~ 302 (539)
T KOG0548|consen 226 KEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALA 302 (539)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHH
Confidence 23456677777888888888888887764 45666677777788888887777766666655422 11222 2
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhc
Q 037911 385 IIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSL-EIYNELMESLCKC 463 (609)
Q Consensus 385 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~ 463 (609)
.+..+|.+.++++.|+..|.+.......|+.. .+....+++....+...-.+ |.. .-...-...+.+.
T Consensus 303 r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~ 371 (539)
T KOG0548|consen 303 RLGNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKK 371 (539)
T ss_pred HhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhc
Confidence 23446666778888888888766554333221 12222233333333332221 211 1122225556677
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 037911 464 DSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALL 543 (609)
Q Consensus 464 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 543 (609)
|++..|++.|.+++..+ +-|...|....-+|.+.|.+..|+.-.+..++.. ++....|..=..++....++++|.+.|
T Consensus 372 gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay 449 (539)
T KOG0548|consen 372 GDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAY 449 (539)
T ss_pred cCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888765 2456778888888888888888887777777542 223334444455555566777788777
Q ss_pred HHHHHc
Q 037911 544 GFFAKK 549 (609)
Q Consensus 544 ~~~~~~ 549 (609)
.+..+.
T Consensus 450 ~eale~ 455 (539)
T KOG0548|consen 450 QEALEL 455 (539)
T ss_pred HHHHhc
Confidence 777754
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.09 E-value=6e-07 Score=79.05 Aligned_cols=323 Identities=14% Similarity=0.148 Sum_probs=145.8
Q ss_pred HHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHH-H
Q 037911 133 VHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNF-L 211 (609)
Q Consensus 133 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l 211 (609)
+..+.+..+|.+|++++....++ .|.+......+.- .|....++.+|-..++++-.. .|...-|.. -
T Consensus 17 iy~lI~d~ry~DaI~~l~s~~Er---~p~~rAgLSlLgy-------CYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~ 84 (459)
T KOG4340|consen 17 VYRLIRDARYADAIQLLGSELER---SPRSRAGLSLLGY-------CYYRLQEFALAAECYEQLGQL--HPELEQYRLYQ 84 (459)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhc---CccchHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHH
Confidence 33344444555555555444433 2223333444443 444555555555555555432 233333321 2
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH--HHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 037911 212 LNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNIL--THVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKG 289 (609)
Q Consensus 212 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l--~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 289 (609)
...+-+.+.+.+|+.+...|... ++...-..- .......+++..+..++++....| +..+.+.......+.|
T Consensus 85 AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykeg 158 (459)
T KOG4340|consen 85 AQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEG 158 (459)
T ss_pred HHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccc
Confidence 23344445555555555544331 111111111 111223344555555554443221 2333333333444555
Q ss_pred CHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-------------CCH-----------
Q 037911 290 RLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLS-------------PDI----------- 345 (609)
Q Consensus 290 ~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~-------------p~~----------- 345 (609)
+++.|++-|+...+.+-......|+..+. +.+.|+++.|++...++.++|+. ||+
T Consensus 159 qyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~ 237 (459)
T KOG4340|consen 159 QYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQ 237 (459)
T ss_pred cHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHH
Confidence 55555555555544322223344443332 23344555555555555544321 111
Q ss_pred ----HHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 037911 346 ----VSYNTLIFAYCKEGKMQESKSLLYEMMGN-GIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDY 420 (609)
Q Consensus 346 ----~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 420 (609)
..+|.-...+.+.|+++.|.+-+-.|.-+ ....|++|.+.+.-. ...+++.+..+-+.-+.+.++ -...||..
T Consensus 238 Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFAN 315 (459)
T KOG4340|consen 238 SALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFAN 315 (459)
T ss_pred HHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHH
Confidence 11222233345677777777777666422 223466666554322 223445455555555555543 45677777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037911 421 LIVALCQDNRPFAATSLLERIGQDGY-VPSLEIYNELMESLCKCDSVADALLLKDEM 476 (609)
Q Consensus 421 ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 476 (609)
++-.||++.-++-|..++-+-....+ -.+...|+.|=....-.-..++|++-++.+
T Consensus 316 lLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 316 LLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred HHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 77788887777777776655321111 123334443322222334555555544443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.5e-07 Score=78.68 Aligned_cols=199 Identities=15% Similarity=0.014 Sum_probs=125.6
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHH
Q 037911 128 NYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVS 207 (609)
Q Consensus 128 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 207 (609)
...-+.-.|...|++..|.+-++++++. .|.....+..+.. .|.+.|..+.|.+.|++++... +.+-.+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~---DPs~~~a~~~~A~-------~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdV 105 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH---DPSYYLAHLVRAH-------YYQKLGENDLADESYRKALSLA-PNNGDV 105 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcccHHHHHHHHH-------HHHHcCChhhHHHHHHHHHhcC-CCccch
Confidence 3444555666667777777777777654 4455555555555 6667777777777777776654 445556
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 037911 208 CNFLLNGLLKLNCIDQCWQVYEEMGRIG-ICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYC 286 (609)
Q Consensus 208 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 286 (609)
.|.....+|..|++++|...|++....- ..--..+|..+.-+..+.|+++.|.+.|++..+.. +-...+.-.+.....
T Consensus 106 LNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~ 184 (250)
T COG3063 106 LNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHY 184 (250)
T ss_pred hhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHH
Confidence 6666667777777777777777665531 11124566666666667777777777777766653 223445556666677
Q ss_pred hcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037911 287 KKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHR 339 (609)
Q Consensus 287 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 339 (609)
+.|++-.|...++.....+. ++....-..|+..-..|+.+.+.++=.++.+.
T Consensus 185 ~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 185 KAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred hcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 77777777777777766554 56666666666666777776666655555543
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.2e-06 Score=81.00 Aligned_cols=64 Identities=16% Similarity=0.062 Sum_probs=49.5
Q ss_pred cCCChhHHHHHHHHhhhcCCCCC-CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhh
Q 037911 102 CQSDSVSALTFFNWVKNDLEIKP-TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLIS 171 (609)
Q Consensus 102 ~~~~~~~A~~~f~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 171 (609)
..++++.|++==...++ ..| -+..|.....++.-.|+|++|+.-|.+-++. .|.+...+..+..
T Consensus 48 ~~~~~~~al~da~k~~~---l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~---d~~n~~L~~gl~~ 112 (539)
T KOG0548|consen 48 SLGSYEKALKDATKTRR---LNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEK---DPSNKQLKTGLAQ 112 (539)
T ss_pred HHhhHHHHHHHHHHHHh---cCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhc---CCchHHHHHhHHH
Confidence 34677777765544443 455 5789999999999999999999999999865 5677777777776
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.6e-05 Score=81.68 Aligned_cols=384 Identities=15% Similarity=0.161 Sum_probs=234.1
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCC
Q 037911 125 TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPS 204 (609)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 204 (609)
|++.-...+.++...+-..+-++++++++-.......+...-+.++- -+-.-+.....+..+++...+ .|+
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiL--------tAikad~trVm~YI~rLdnyD-a~~ 1053 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLIL--------TAIKADRTRVMEYINRLDNYD-APD 1053 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHH--------HHhhcChHHHHHHHHHhccCC-chh
Confidence 45555555666666666666666666665432222222222233322 112223333444444443322 122
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 037911 205 IVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISS 284 (609)
Q Consensus 205 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 284 (609)
+.......+-+++|..+|++.. .+....+.|+. .-+.++.|.++-++.. .+..|..+..+
T Consensus 1054 ------ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakA 1113 (1666)
T KOG0985|consen 1054 ------IAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKA 1113 (1666)
T ss_pred ------HHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHH
Confidence 2233445556677777777642 34445555544 3356666666665543 45678888888
Q ss_pred HHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHH
Q 037911 285 YCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQES 364 (609)
Q Consensus 285 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 364 (609)
-.+.|.+.+|++-|-+.. |...|..+++...+.|.+++-.+++....+..-.|... ..||-+|++.++..+.
T Consensus 1114 QL~~~~v~dAieSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~el 1185 (1666)
T KOG0985|consen 1114 QLQGGLVKDAIESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTEL 1185 (1666)
T ss_pred HHhcCchHHHHHHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHH
Confidence 888888888887775432 66788889999999999999888887777765555544 4678888888887776
Q ss_pred HHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037911 365 KSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQD 444 (609)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 444 (609)
.+++ ..||......+.+-|...+.++.|.-+|.. ...|..+...+...|++..|...-++.
T Consensus 1186 E~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA--- 1246 (1666)
T KOG0985|consen 1186 EEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA--- 1246 (1666)
T ss_pred HHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc---
Confidence 6554 347777788888888888888888877754 345777888888888877777655443
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCC-CCHHHH
Q 037911 445 GYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGML-PDSQIC 523 (609)
Q Consensus 445 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~ 523 (609)
.+..+|..+-.+|...+.+.-|. |-..++.....-...++..|...|-+++.+.+++... |+. .....|
T Consensus 1247 ---ns~ktWK~VcfaCvd~~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L--GLERAHMgmf 1316 (1666)
T KOG0985|consen 1247 ---NSTKTWKEVCFACVDKEEFRLAQ-----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL--GLERAHMGMF 1316 (1666)
T ss_pred ---cchhHHHHHHHHHhchhhhhHHH-----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh--chhHHHHHHH
Confidence 35677888888887766655442 3333333445556777888888888888888887766 332 233445
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCC-------ChhcHHHHHHHHHhcCCHHHHH
Q 037911 524 RVLINGYCMEKDVNKAEALLGFFAKKFQIY-------DTESYNAVFNMFAEDGDLSKLM 575 (609)
Q Consensus 524 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~A~ 575 (609)
+-|.-.|.+- ++++..+-++.....-..| ....|+.++-.|.+-..++.|.
T Consensus 1317 TELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1317 TELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred HHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 5555555543 3344444443333211111 1234666666666666666553
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.1e-05 Score=79.07 Aligned_cols=392 Identities=14% Similarity=0.172 Sum_probs=212.1
Q ss_pred CChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhh--------CCCCCcHHhHHHHhhcccc
Q 037911 104 SDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELV--------KDCPHSVDVFQDLISCTED 175 (609)
Q Consensus 104 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~ 175 (609)
|+-+.|.+-.+... +-..|..|++.+.+.++.+-|.-.+-.|.... ...+.....-..+
T Consensus 742 G~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAv------ 808 (1416)
T KOG3617|consen 742 GSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAV------ 808 (1416)
T ss_pred ccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHH------
Confidence 56666665554443 56789999999999888888776665553220 1112122222222
Q ss_pred chhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 037911 176 CNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGD 255 (609)
Q Consensus 176 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 255 (609)
.-...|.+++|+.+|++-.+. ..|=..|-..|.+++|.++-+.--+. . =..||..-..-+-..++
T Consensus 809 ---LAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRi--H-Lr~Tyy~yA~~Lear~D 873 (1416)
T KOG3617|consen 809 ---LAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRI--H-LRNTYYNYAKYLEARRD 873 (1416)
T ss_pred ---HHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccce--e-hhhhHHHHHHHHHhhcc
Confidence 346889999999999988763 34445666789999999887653332 1 23455556666667788
Q ss_pred hHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 037911 256 VDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHR 335 (609)
Q Consensus 256 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 335 (609)
.+.|++.|++.... --..+..|. .++.....+.+.+. |...|.=...-+-..|+.|.|+.+|..
T Consensus 874 i~~AleyyEK~~~h----afev~rmL~------e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 874 IEAALEYYEKAGVH----AFEVFRMLK------EYPKQIEQYVRRKR------DESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred HHHHHHHHHhcCCh----HHHHHHHHH------hChHHHHHHHHhcc------chHHHHHHHHHHhcccchHHHHHHHHH
Confidence 88888888764311 111111111 11222222222222 233344344444566777777777776
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH
Q 037911 336 MVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISR 415 (609)
Q Consensus 336 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 415 (609)
.+. |-+++...|-.|+.++|-++-++- -|...+..+.+.|-..|++.+|...|.+.+.
T Consensus 938 A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa------- 995 (1416)
T KOG3617|consen 938 AKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA------- 995 (1416)
T ss_pred hhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-------
Confidence 553 455666777778888877766543 2556677777888888888888877766543
Q ss_pred HHHHHHHHHHHhcC---------------ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-----
Q 037911 416 DIYDYLIVALCQDN---------------RPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDE----- 475 (609)
Q Consensus 416 ~~~~~ll~~~~~~~---------------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~----- 475 (609)
+...|+.|-.++ +.-.|.+.|++. |. -+...+..|-+.|.+.+|+++--+
T Consensus 996 --fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~ 1065 (1416)
T KOG3617|consen 996 --FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFS 1065 (1416)
T ss_pred --HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccH
Confidence 222222222221 112222333332 10 122234456667777776654211
Q ss_pred ---HH--HCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 037911 476 ---MV--DRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKF 550 (609)
Q Consensus 476 ---~~--~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 550 (609)
++ +.....|+...+.-.+-++...++++|..++-...+. ...+.. |+..++.-..++-+.|.-..
T Consensus 1066 aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~---------~~Alql-C~~~nv~vtee~aE~mTp~K 1135 (1416)
T KOG3617|consen 1066 ALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREF---------SGALQL-CKNRNVRVTEEFAELMTPTK 1135 (1416)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---------HHHHHH-HhcCCCchhHHHHHhcCcCc
Confidence 11 1222345666666666677777777777776655431 112222 22223333333333332111
Q ss_pred -CCCCh----hcHHHHHHHHHhcCCHHHHHHHHHHH
Q 037911 551 -QIYDT----ESYNAVFNMFAEDGDLSKLMELQKRF 581 (609)
Q Consensus 551 -~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m 581 (609)
..|+. .....+...|.++|.+..|-+-|.+.
T Consensus 1136 d~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1136 DDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred CCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 12222 23455556666666666665555444
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.4e-06 Score=82.61 Aligned_cols=168 Identities=18% Similarity=0.135 Sum_probs=98.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 037911 352 IFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRP 431 (609)
Q Consensus 352 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 431 (609)
+.+......|.+|+.+++.+.... ....-|..+.+.|...|+++.|.++|.+. ..++-.|.+|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 444455667777777777766552 22334566667777777777777777543 2345566777777777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHH
Q 037911 432 FAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEM 511 (609)
Q Consensus 432 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 511 (609)
++|.++-++.. |.......|-+-..-+-++|++.+|+++|-.+.+ |+. .|..|-+.|..+..+++.++-
T Consensus 808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~~-----aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PDK-----AIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----chH-----HHHHHHhhCcchHHHHHHHHh
Confidence 77777665543 2233445555555556667777777766644332 432 345566666666666666554
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 037911 512 LESGMLPDSQICRVLINGYCMEKDVNKAEALLG 544 (609)
Q Consensus 512 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 544 (609)
.. ..-..|...+..-+-..|++..|..-|-
T Consensus 877 h~---d~l~dt~~~f~~e~e~~g~lkaae~~fl 906 (1636)
T KOG3616|consen 877 HG---DHLHDTHKHFAKELEAEGDLKAAEEHFL 906 (1636)
T ss_pred Ch---hhhhHHHHHHHHHHHhccChhHHHHHHH
Confidence 21 1112344455556666666666666553
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.6e-06 Score=85.43 Aligned_cols=457 Identities=11% Similarity=-0.009 Sum_probs=239.5
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHH--H
Q 037911 92 AHEISRVLLRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQD--L 169 (609)
Q Consensus 92 ~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~--l 169 (609)
+-..++.+.+..-|...|.+.|+.+..- ..-+..++....+.|++..+++.|..+.-..-+. .+-....++- .
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeL--Datdaeaaaa~adtyae~~~we~a~~I~l~~~qk---a~a~~~k~nW~~r 568 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFEL--DATDAEAAAASADTYAEESTWEEAFEICLRAAQK---APAFACKENWVQR 568 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC--CchhhhhHHHHHHHhhccccHHHHHHHHHHHhhh---chHHHHHhhhhhc
Confidence 3445566655555777788888877641 2336777788888888888888888774333322 1111111111 2
Q ss_pred hhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH-HHHHHHHH
Q 037911 170 ISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNT-HTFNILTH 248 (609)
Q Consensus 170 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~l~~ 248 (609)
.- .|...++...|+.-|+...+.. +.|...|..++.+|.+.|++..|.++|.+.... .|+. ..---...
T Consensus 569 G~-------yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~y~~fk~A~ 638 (1238)
T KOG1127|consen 569 GP-------YYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLSKYGRFKEAV 638 (1238)
T ss_pred cc-------cccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHhHHHHHHHHH
Confidence 22 6778888899999998888765 567788888999999999999999999887763 3432 22222334
Q ss_pred HHHHcCChHHHHHHHHHHHHcC------CCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhh-------CCccCCHhhHHH
Q 037911 249 VFCKNGDVDKVNGFLEKIEEEG------FDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYR-------RNVLPDLVTYTT 315 (609)
Q Consensus 249 ~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-------~~~~p~~~~~~~ 315 (609)
..|..|.+.+|+..+..+.... ..--..++-.+...+.-.|-..+|.+.+++-++ ....-+...|-.
T Consensus 639 ~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~ 718 (1238)
T KOG1127|consen 639 MECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIV 718 (1238)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 4667788888888888776531 111122333333333334444444444444332 111112222222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh---H---HHHHHHHHHHHCCCccCHHHHHHHHHH
Q 037911 316 LMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKM---Q---ESKSLLYEMMGNGIYPDTFTCQIIVQG 389 (609)
Q Consensus 316 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~---~---~A~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (609)
+- .|..+|-... .. .|+......+..-.-..+.. + -+.+.+-.-++. .-+..+|..++..
T Consensus 719 as----------dac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl--~~~~~~WyNLGin 784 (1238)
T KOG1127|consen 719 AS----------DACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSL--AIHMYPWYNLGIN 784 (1238)
T ss_pred Hh----------HHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHH--hhccchHHHHhHH
Confidence 22 2223333322 11 22322222222212222221 1 111111111111 1123344444443
Q ss_pred HHc------c--CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 037911 390 YGK------E--GRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLC 461 (609)
Q Consensus 390 ~~~------~--~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 461 (609)
|.+ . .+...|+..+.+..+.. .-+..+++.+.-. ...|++.-+...|-+-.... +....+|..+.-.+.
T Consensus 785 ylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l 861 (1238)
T KOG1127|consen 785 YLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVL 861 (1238)
T ss_pred HHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEE
Confidence 332 1 12246777777766553 2244455544433 44455555554444433222 345567777777788
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHH--H--CCCCCCHHHHHHHHHHHHccCCHH
Q 037911 462 KCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEML--E--SGMLPDSQICRVLINGYCMEKDVN 537 (609)
Q Consensus 462 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~--~~~~p~~~~~~~l~~~~~~~g~~~ 537 (609)
+..+++.|...|.......+ .|...|-.........|+.-++..+|..-. . .|-.++...|-.........|+.+
T Consensus 862 ~n~d~E~A~~af~~~qSLdP-~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e 940 (1238)
T KOG1127|consen 862 ENQDFEHAEPAFSSVQSLDP-LNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIE 940 (1238)
T ss_pred ecccHHHhhHHHHhhhhcCc-hhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchH
Confidence 88888888888888776542 344555555444556677777777776521 1 132344443333333334455544
Q ss_pred HHHHH----------HHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037911 538 KAEAL----------LGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFL 582 (609)
Q Consensus 538 ~A~~~----------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 582 (609)
+-+.. ++..... .+-+...|...+...-+.+.+.+|.++..+..
T Consensus 941 ~~I~t~~ki~sAs~al~~yf~~-~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 941 ESINTARKISSASLALSYYFLG-HPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred HHHHHhhhhhhhHHHHHHHHhc-CcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 43322 2233322 12233566666666667777777776666554
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1e-05 Score=90.43 Aligned_cols=336 Identities=11% Similarity=0.012 Sum_probs=182.5
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC--C----CCC--HHHHHHHHHHH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIG--I----CPN--THTFNILTHVF 250 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~----~~~--~~~~~~l~~~~ 250 (609)
.....|+++.+..+++.+.......+..........+...|++++|...+......- . .+. ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 455667777766666654211111122222334444556778888887777664320 0 011 11222233445
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCC----HHhHHHHHHHHHhcCCHhHHHHHHHHHhhC----Cc-cCCHhhHHHHHHHHH
Q 037911 251 CKNGDVDKVNGFLEKIEEEGFDPD----LVTYNTLISSYCKKGRLNDAFYLYRIMYRR----NV-LPDLVTYTTLMNGLC 321 (609)
Q Consensus 251 ~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~p~~~~~~~ll~~~~ 321 (609)
...|++++|...+++....-...+ ....+.+...+...|++++|...+++.... |. .....++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 567888888888877665311111 123455556667788888888887777642 11 111234445566677
Q ss_pred hcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCcc--CHHHHHHHHHHH
Q 037911 322 KEGKVREAHQLFHRMVHR----GLS--P-DIVSYNTLIFAYCKEGKMQESKSLLYEMMGN--GIYP--DTFTCQIIVQGY 390 (609)
Q Consensus 322 ~~~~~~~a~~~~~~m~~~----g~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~--~~~~~~~l~~~~ 390 (609)
..|++++|...+++.... |.. + ....+..+...+...|++++|...+++.... ...+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 788888888877776542 211 1 1223444555566678888888877776542 1111 123344455566
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCC-HHHH-----HHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHH
Q 037911 391 GKEGRLLSALNLVVELQRFGVSIS-RDIY-----DYLIVALCQDNRPFAATSLLERIGQDGYVPS---LEIYNELMESLC 461 (609)
Q Consensus 391 ~~~~~~~~A~~~~~~~~~~~~~~~-~~~~-----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~ 461 (609)
...|++++|...+........... ...+ ...+..+...|+.+.+...+........... ...+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 777888888887777644210000 0000 1112334456676777776655432211111 111344566677
Q ss_pred hcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhcCCCHhHHHHHHHHHHHC
Q 037911 462 KCDSVADALLLKDEMVDR----NIKPS-LSTYRALICCFCGIGRSGEAVSLMDEMLES 514 (609)
Q Consensus 462 ~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 514 (609)
..|+.++|...+++.... |...+ ..+...+..++.+.|+.++|...+.++.+.
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 778888888877776542 22121 234455556677788888888888887764
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.9e-06 Score=91.73 Aligned_cols=337 Identities=11% Similarity=0.010 Sum_probs=209.9
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCc------cCCH--hhHHHHHHHH
Q 037911 249 VFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNV------LPDL--VTYTTLMNGL 320 (609)
Q Consensus 249 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~------~p~~--~~~~~ll~~~ 320 (609)
.....|+++.+...++.+.......+..........+...|++++|...+....+.-- .+.. .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3445677777777776653221111222333444556678999999999887754210 1111 1222233455
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHC----CC-ccCHHHHHHHHHHHH
Q 037911 321 CKEGKVREAHQLFHRMVHRGLSPDI----VSYNTLIFAYCKEGKMQESKSLLYEMMGN----GI-YPDTFTCQIIVQGYG 391 (609)
Q Consensus 321 ~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~ 391 (609)
...|++++|...+++..+.-...+. ...+.+...+...|++++|...+++.... |. .....++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6789999999999988763111121 23455666677899999999999887643 11 111234556667788
Q ss_pred ccCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCC--CHHHHHHHHHHH
Q 037911 392 KEGRLLSALNLVVELQRF----GVS--I-SRDIYDYLIVALCQDNRPFAATSLLERIGQD--GYVP--SLEIYNELMESL 460 (609)
Q Consensus 392 ~~~~~~~A~~~~~~~~~~----~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~--~~~~~~~l~~~~ 460 (609)
..|++++|...+++.... +.. + ....+..+...+...|++++|...+.+.... ...+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 899999999988876542 211 1 2233445566677789999999888776321 1112 234455566778
Q ss_pred HhcCCHHHHHHHHHHHHHCCC-CCCHHHH-----HHHHHHHhcCCCHhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHH
Q 037911 461 CKCDSVADALLLKDEMVDRNI-KPSLSTY-----RALICCFCGIGRSGEAVSLMDEMLESGMLPD---SQICRVLINGYC 531 (609)
Q Consensus 461 ~~~g~~~~A~~~~~~~~~~~~-~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~ 531 (609)
...|++++|...+.+...... ......+ ...+..+...|+.+.|..++........... ...+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 889999999999888754210 0111111 1122344557899999999877654221111 112456777888
Q ss_pred ccCCHHHHHHHHHHHHHcC----CCCC-hhcHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037911 532 MEKDVNKAEALLGFFAKKF----QIYD-TESYNAVFNMFAEDGDLSKLMELQKRFLRLG 585 (609)
Q Consensus 532 ~~g~~~~A~~~~~~~~~~~----~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 585 (609)
..|+.++|...++...... ...+ ..+...+..++...|+.++|.+.+.++++..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999998877542 1211 2456667788899999999999999998754
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.2e-06 Score=72.88 Aligned_cols=388 Identities=14% Similarity=0.117 Sum_probs=238.2
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHH-HHHHHHHcCChH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNI-LTHVFCKNGDVD 257 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-l~~~~~~~g~~~ 257 (609)
.+.+..++++|++++..-.+.. +.+......|..+|-...++..|-+.|+++... .|...-|.. -...+.+.+.+.
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~A 95 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYA 95 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccH
Confidence 4578889999999998887764 447777888888999999999999999999874 566665543 345677889999
Q ss_pred HHHHHHHHHHHcCCCCCHHh--HHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 037911 258 KVNGFLEKIEEEGFDPDLVT--YNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHR 335 (609)
Q Consensus 258 ~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 335 (609)
.|+.+...|.+. ++... ...-.......+++..+..++++....| +..+.+.......+.|+++.|.+-|+.
T Consensus 96 DALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqa 169 (459)
T KOG4340|consen 96 DALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQA 169 (459)
T ss_pred HHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHH
Confidence 999999988753 22221 2212223446788888998888876433 445555555666799999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCcc-------------C------HH---------HHHHHH
Q 037911 336 MVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYP-------------D------TF---------TCQIIV 387 (609)
Q Consensus 336 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-------------~------~~---------~~~~l~ 387 (609)
..+-+---....|+..+ +..+.|+.+.|++...+++++|++- | .. .+|.-.
T Consensus 170 AlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKa 248 (459)
T KOG4340|consen 170 ALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKA 248 (459)
T ss_pred HHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhh
Confidence 98864333455676554 4557899999999999998876531 1 11 122222
Q ss_pred HHHHccCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 037911 388 QGYGKEGRLLSALNLVVELQRF-GVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSV 466 (609)
Q Consensus 388 ~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 466 (609)
..+.+.++++.|.+.+.+|.-+ .-..|+.|...+.-.= ..+++.+..+-+.-+...+. -...||..++-.||+..-+
T Consensus 249 AIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf 326 (459)
T KOG4340|consen 249 AIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYF 326 (459)
T ss_pred hhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHH
Confidence 3356788899998888887433 2244666665543322 23445555555555544443 3457788888899999989
Q ss_pred HHHHHHHHHHHHCCCC-CCHHHHHHHHHHHh-cCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC---HHHHHH
Q 037911 467 ADALLLKDEMVDRNIK-PSLSTYRALICCFC-GIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKD---VNKAEA 541 (609)
Q Consensus 467 ~~A~~~~~~~~~~~~~-p~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~ 541 (609)
+-|-.++.+-.....+ .+...|+ +++++. ..-..++|.+-++.+... +.-.......-+.--...++ +..|.+
T Consensus 327 ~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~-l~~kLRklAi~vQe~r~~~dd~a~R~ai~ 404 (459)
T KOG4340|consen 327 DLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGM-LTEKLRKLAIQVQEARHNRDDEAIRKAVN 404 (459)
T ss_pred hHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 8888877543221110 1223333 333332 345566666655554321 00000000011111111111 112222
Q ss_pred HHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037911 542 LLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRL 584 (609)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 584 (609)
-+++..+. -..+..+-.+.|++..++..+.++|..-.+.
T Consensus 405 ~Yd~~LE~----YLPVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 405 EYDETLEK----YLPVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 22332222 1122344455677888999999999887743
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.7e-06 Score=81.38 Aligned_cols=389 Identities=13% Similarity=0.083 Sum_probs=212.9
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 037911 130 CLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCN 209 (609)
Q Consensus 130 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 209 (609)
...++.+...|+-++|.++ .. .+.+.+.. |. .|.+.|..-.|......=.+ +..|.....
T Consensus 593 ~sy~q~l~dt~qd~ka~el----k~------sdgd~laa-iq-------lyika~~p~~a~~~a~n~~~--l~~de~il~ 652 (1636)
T KOG3616|consen 593 RSYLQALMDTGQDEKAAEL----KE------SDGDGLAA-IQ-------LYIKAGKPAKAARAALNDEE--LLADEEILE 652 (1636)
T ss_pred HHHHHHHHhcCchhhhhhh----cc------ccCccHHH-HH-------HHHHcCCchHHHHhhcCHHH--hhccHHHHH
Confidence 3445666777777766543 11 12233333 33 68888888777665432221 234555555
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCC----------------------CCCCHHHH-HHHHHHHHHcCChHHHHHHHHHH
Q 037911 210 FLLNGLLKLNCIDQCWQVYEEMGRIG----------------------ICPNTHTF-NILTHVFCKNGDVDKVNGFLEKI 266 (609)
Q Consensus 210 ~ll~~~~~~~~~~~a~~~~~~m~~~~----------------------~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~ 266 (609)
.+..++.+..-+++|-.+|+++.... ++..+.+. .....-+...|+++.|+..|-+.
T Consensus 653 ~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea 732 (1636)
T KOG3616|consen 653 HIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEA 732 (1636)
T ss_pred HHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHh
Confidence 56666666555666666665553210 00000000 00011111222333332222211
Q ss_pred HHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 037911 267 EEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIV 346 (609)
Q Consensus 267 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 346 (609)
. ..-..+.+......|.+|+.+++.+.+... -..-|..+...|+..|+++.|.++|.+.-
T Consensus 733 ~---------~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~--------- 792 (1636)
T KOG3616|consen 733 N---------CLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD--------- 792 (1636)
T ss_pred h---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------
Confidence 1 112233455566778888888887776533 33456777888899999999998887542
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 037911 347 SYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALC 426 (609)
Q Consensus 347 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 426 (609)
.++-.|.+|.+.|+|++|.++-.+.. |.......|..-..-+-+.|++.+|.++|-.+.. |+ ..|.+|-
T Consensus 793 ~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmyd 861 (1636)
T KOG3616|consen 793 LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYD 861 (1636)
T ss_pred hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHH
Confidence 34567888999999999988876654 4444556676667777788888888877744332 22 3567778
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHH
Q 037911 427 QDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVS 506 (609)
Q Consensus 427 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 506 (609)
+.|..++.+++.++..... -..|...+..-+-..|++..|+.-|-+..+ |..-+..|...+.+++|.+
T Consensus 862 k~~~~ddmirlv~k~h~d~---l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayr 929 (1636)
T KOG3616|consen 862 KHGLDDDMIRLVEKHHGDH---LHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYR 929 (1636)
T ss_pred hhCcchHHHHHHHHhChhh---hhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHH
Confidence 8888777777776653221 123444556666677777777776654432 3333444444444444444
Q ss_pred HHHHHH------------HCCCCCCH--------HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHH
Q 037911 507 LMDEML------------ESGMLPDS--------QICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFA 566 (609)
Q Consensus 507 ~~~~~~------------~~~~~p~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 566 (609)
+-+.-- ...+--+. -.+..-++..+..+.++-|.++-+...+.. -..+.-.+..-+.
T Consensus 930 iaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k---~~~vhlk~a~~le 1006 (1636)
T KOG3616|consen 930 IAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK---MGEVHLKLAMFLE 1006 (1636)
T ss_pred HHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc---CccchhHHhhhhh
Confidence 322110 00000010 012233344455566666666655554331 1223344555567
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 037911 567 EDGDLSKLMELQKRFLRL 584 (609)
Q Consensus 567 ~~g~~~~A~~~~~~m~~~ 584 (609)
..|++++|.+.|-+..+.
T Consensus 1007 degk~edaskhyveaikl 1024 (1636)
T KOG3616|consen 1007 DEGKFEDASKHYVEAIKL 1024 (1636)
T ss_pred hccchhhhhHhhHHHhhc
Confidence 788888888887776643
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.5e-05 Score=78.51 Aligned_cols=153 Identities=14% Similarity=0.136 Sum_probs=87.3
Q ss_pred HHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHh-------hCCCCCcHHhHHH
Q 037911 96 SRVLLRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVEL-------VKDCPHSVDVFQD 168 (609)
Q Consensus 96 ~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~~~ 168 (609)
+.-+.+.+|.++.|+++-+. ...-|-..+|+..+.-+...++.+.|++.|++.-.. -...|+....|..
T Consensus 832 lNKlyQs~g~w~eA~eiAE~----~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~ 907 (1416)
T KOG3617|consen 832 LNKLYQSQGMWSEAFEIAET----KDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVR 907 (1416)
T ss_pred HHHHHHhcccHHHHHHHHhh----ccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHH
Confidence 33455566677766655432 222345567777777788888888888888764211 0111222221111
Q ss_pred Hhhccccchh---HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHH
Q 037911 169 LISCTEDCNW---AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNI 245 (609)
Q Consensus 169 l~~~~~~~~~---~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 245 (609)
-.+-..-..| ..-..|+.+.|+.+|..+.+ |-++.+..|-.|+.++|-++-++- -|......
T Consensus 908 ~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYh 972 (1416)
T KOG3617|consen 908 RKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYH 972 (1416)
T ss_pred hccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHH
Confidence 1000000011 23356677777777766553 566667777777777777776652 34555556
Q ss_pred HHHHHHHcCChHHHHHHHHHHH
Q 037911 246 LTHVFCKNGDVDKVNGFLEKIE 267 (609)
Q Consensus 246 l~~~~~~~g~~~~a~~~~~~~~ 267 (609)
|.+.|-..|++.+|+.+|.+..
T Consensus 973 laR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 973 LARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHhhhhHHHHHHHHHHHHHH
Confidence 7777777788877777776653
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.3e-05 Score=70.75 Aligned_cols=317 Identities=12% Similarity=0.075 Sum_probs=160.1
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCC
Q 037911 125 TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPS 204 (609)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 204 (609)
+..-..-+...+...|++.+|+.-|..+++. .|.+-.++..-.. .|...|+-.-|+.-+.+.++. +||
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~---dp~~Y~aifrRaT-------~yLAmGksk~al~Dl~rVlel--KpD 104 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG---DPNNYQAIFRRAT-------VYLAMGKSKAALQDLSRVLEL--KPD 104 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC---CchhHHHHHHHHH-------HHhhhcCCccchhhHHHHHhc--Ccc
Confidence 4455556677777788888888888877753 3333222222222 677888888888888888774 455
Q ss_pred HHHH-HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 037911 205 IVSC-NFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLIS 283 (609)
Q Consensus 205 ~~~~-~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 283 (609)
-..- -.-...+.+.|.+++|..=|+.+.+.. |+..+- .++.+-+..+.+ .......+.
T Consensus 105 F~~ARiQRg~vllK~Gele~A~~DF~~vl~~~--~s~~~~-------------~eaqskl~~~~e------~~~l~~ql~ 163 (504)
T KOG0624|consen 105 FMAARIQRGVVLLKQGELEQAEADFDQVLQHE--PSNGLV-------------LEAQSKLALIQE------HWVLVQQLK 163 (504)
T ss_pred HHHHHHHhchhhhhcccHHHHHHHHHHHHhcC--CCcchh-------------HHHHHHHHhHHH------HHHHHHHHH
Confidence 4322 223346677888888888888877643 322111 011111111000 011111222
Q ss_pred HHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHH
Q 037911 284 SYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQE 363 (609)
Q Consensus 284 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 363 (609)
.+...|+...|+.....+++..+ .|...|..-..+|...|++..|+.-++...+.. .-+...+.-+-..+...|+.+.
T Consensus 164 s~~~~GD~~~ai~~i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~ 241 (504)
T KOG0624|consen 164 SASGSGDCQNAIEMITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAEN 241 (504)
T ss_pred HHhcCCchhhHHHHHHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHH
Confidence 34445666666666666655432 255555555566666666666655555544432 1233344444455555666666
Q ss_pred HHHHHHHHHHCCCccCHHHHHHH-------------HHHHHccCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHh
Q 037911 364 SKSLLYEMMGNGIYPDTFTCQII-------------VQGYGKEGRLLSALNLVVELQRFGVSISR---DIYDYLIVALCQ 427 (609)
Q Consensus 364 A~~~~~~~~~~~~~~~~~~~~~l-------------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~ll~~~~~ 427 (609)
++...++-++. .||...+-.. +......++|.++++-.+...+....... ..+..+-.++..
T Consensus 242 sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~ 319 (504)
T KOG0624|consen 242 SLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYRE 319 (504)
T ss_pred HHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccc
Confidence 66666555543 3333221110 11123344555555555555444322111 122233334444
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037911 428 DNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDR 479 (609)
Q Consensus 428 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 479 (609)
.+++.+|++...+..... +.|..++-.-..+|.-...+++|+.-|+...+.
T Consensus 320 d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 320 DEQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred cCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 555555555555554432 223555555555555555556666555555554
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.5e-05 Score=81.87 Aligned_cols=408 Identities=11% Similarity=0.010 Sum_probs=208.3
Q ss_pred hhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 037911 142 FSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCI 221 (609)
Q Consensus 142 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 221 (609)
...|...|-..++. .+.-...|..+.. .|....+...|.+.|+++.+.+ ..+...+..+.+.|++..++
T Consensus 474 ~~~al~ali~alrl---d~~~apaf~~LG~-------iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~w 542 (1238)
T KOG1127|consen 474 SALALHALIRALRL---DVSLAPAFAFLGQ-------IYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTW 542 (1238)
T ss_pred HHHHHHHHHHHHhc---ccchhHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccH
Confidence 34444444444433 2333445555555 5666667777777787777765 45666777777778888888
Q ss_pred HHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHH
Q 037911 222 DQCWQVYEEMGRIG-ICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRI 300 (609)
Q Consensus 222 ~~a~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 300 (609)
+.|..+.-..-+.. ...-..-|....-.|.+.++...|+.-|+...... +.|...|..++.+|...|++..|+++|.+
T Consensus 543 e~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~k 621 (1238)
T KOG1127|consen 543 EEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTK 621 (1238)
T ss_pred HHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhh
Confidence 87777743332211 00011222223334566677777777777776653 33566777777888888888888888877
Q ss_pred HhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH--
Q 037911 301 MYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHR------GLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMM-- 372 (609)
Q Consensus 301 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-- 372 (609)
.....+. +...---.....|..|.+.+|...+..+... +..--..++-.+...+.-.|=..+|.+++++-+
T Consensus 622 As~LrP~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~ 700 (1238)
T KOG1127|consen 622 ASLLRPL-SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIES 700 (1238)
T ss_pred hHhcCcH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 7654322 1121112233446677777777777766542 111112223222222333333333333333322
Q ss_pred -----HCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh--HH----HHHHHHHH
Q 037911 373 -----GNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRP--FA----ATSLLERI 441 (609)
Q Consensus 373 -----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~--~~----a~~~~~~~ 441 (609)
.+....+...|-.+.+ |..+|.... .. .|+......+..-+...+.. .+ +.+.+-.
T Consensus 701 f~~~l~h~~~~~~~~Wi~asd----------ac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~- 767 (1238)
T KOG1127|consen 701 FIVSLIHSLQSDRLQWIVASD----------ACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIA- 767 (1238)
T ss_pred HHHHHHHhhhhhHHHHHHHhH----------HHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhH-
Confidence 2211112222222222 222222222 11 12222222222112222211 01 0010000
Q ss_pred HhCCCCCCHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHH
Q 037911 442 GQDGYVPSLEIYNELMESLCK--------CDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLE 513 (609)
Q Consensus 442 ~~~~~~~~~~~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 513 (609)
......+..+|..++..|.+ ..+...|+..+...++.. ..+..+|+.|.-. ...|++.-|...|-+...
T Consensus 768 -hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~ 844 (1238)
T KOG1127|consen 768 -HLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRF 844 (1238)
T ss_pred -HHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhh
Confidence 00111123334444433333 123345677777666542 1456667766654 666788878777777665
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHH
Q 037911 514 SGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKR 580 (609)
Q Consensus 514 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 580 (609)
.. +....+|..+.-.+.+..+++-|...|....... +.|...|--........|+.-++..+|.-
T Consensus 845 se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 845 SE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred cc-ccchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 42 4456677778888888888888888888777442 23445555555555567777777777655
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.5e-07 Score=86.02 Aligned_cols=248 Identities=17% Similarity=0.152 Sum_probs=120.7
Q ss_pred HhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 037911 286 CKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESK 365 (609)
Q Consensus 286 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 365 (609)
.-.|++..++.-.+ ........+......+.+++...|+.+.++ .++.... .|.......+...+...++-+.+.
T Consensus 12 fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp HCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHH
Confidence 33456666554444 211111112333444555666666655432 2332222 444444443333332223334444
Q ss_pred HHHHHHHHCCCcc-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037911 366 SLLYEMMGNGIYP-DTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQD 444 (609)
Q Consensus 366 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 444 (609)
.-+++........ +..........+...|++++|++++... .+.......+.++.+.++++.|.+.++.|.+.
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~ 160 (290)
T PF04733_consen 87 EELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI 160 (290)
T ss_dssp HHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4443333222221 2222222233455566777776666432 24455555666666667767776666666543
Q ss_pred CCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCH
Q 037911 445 GYVPSLEIYNELMESLCK----CDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDS 520 (609)
Q Consensus 445 ~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 520 (609)
. .| .+...+..++.. .+.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.++++++.+.+ +-+.
T Consensus 161 ~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~ 235 (290)
T PF04733_consen 161 D--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDP 235 (290)
T ss_dssp S--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHH
T ss_pred C--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCH
Confidence 2 22 233333333332 23567777777776554 34566666777777777777777777777766543 3345
Q ss_pred HHHHHHHHHHHccCCH-HHHHHHHHHHHHc
Q 037911 521 QICRVLINGYCMEKDV-NKAEALLGFFAKK 549 (609)
Q Consensus 521 ~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~ 549 (609)
.++..++.+....|+. +.+.+++.++...
T Consensus 236 d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 236 DTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 5555666666666665 5566666666654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.7e-05 Score=70.39 Aligned_cols=197 Identities=13% Similarity=0.091 Sum_probs=117.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHH---HHHHHhcCCHhHHHHHHHHHhhCCccCCHhh-HH
Q 037911 239 NTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTL---ISSYCKKGRLNDAFYLYRIMYRRNVLPDLVT-YT 314 (609)
Q Consensus 239 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~-~~ 314 (609)
++.-.--+...+...|++..|+.-|...++. |+..|.++ ...|...|+...|+.-+...++. +||-.. --
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARi 110 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARI 110 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHH
Confidence 3444455677777888888888888887764 33344443 45677788888888888888775 455322 22
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HH------------HHHHHHHHHHcCChHHHHHHHHHHHHCCCccCH
Q 037911 315 TLMNGLCKEGKVREAHQLFHRMVHRGLSPDI--VS------------YNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDT 380 (609)
Q Consensus 315 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~------------~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 380 (609)
.-...+.+.|.++.|..-|+...+.....+. .. ....+..+...|+...|+.....+++.. +-|.
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda 189 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDA 189 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchh
Confidence 2334667888888888888888876321110 11 1122333445566666666666666541 2244
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037911 381 FTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQ 443 (609)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 443 (609)
..+..-..+|...|++..|+.=++...+..- -+..++..+-..+...|+.+.++..+++..+
T Consensus 190 ~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 190 SLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 5555556666666666666665555554432 2444455555566666666666666665544
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.83 E-value=0.00014 Score=70.04 Aligned_cols=149 Identities=14% Similarity=0.182 Sum_probs=105.6
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcCCCHhHHHHHHHHH
Q 037911 433 AATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKP-SLSTYRALICCFCGIGRSGEAVSLMDEM 511 (609)
Q Consensus 433 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~ 511 (609)
.....+.++...-...-..+|-.+++...+..-++.|..+|.+..+.+..+ ++...++++..+| .++..-|.++|+--
T Consensus 349 ~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLG 427 (656)
T KOG1914|consen 349 KVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELG 427 (656)
T ss_pred hhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHH
Confidence 333444554322222233456777777777788888888998888776666 6667777777665 47778888888877
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCh--hcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037911 512 LESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDT--ESYNAVFNMFAEDGDLSKLMELQKRFLR 583 (609)
Q Consensus 512 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 583 (609)
.+. ..-++......++.+...++-..|..+|+.....+..++. ..|..++.-=..-|+...+.++-+++..
T Consensus 428 Lkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 428 LKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 653 3344555567778888888888888899888877554443 6788888888888888888888877764
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.81 E-value=0.0003 Score=72.72 Aligned_cols=231 Identities=15% Similarity=0.191 Sum_probs=136.6
Q ss_pred CChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHh
Q 037911 104 SDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKV 183 (609)
Q Consensus 104 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 183 (609)
-|+...+++.+.+-+ +... .++.+...++-+++|..+|...- .+......++. .-
T Consensus 1034 ad~trVm~YI~rLdn---yDa~-----~ia~iai~~~LyEEAF~ifkkf~-------~n~~A~~VLie----------~i 1088 (1666)
T KOG0985|consen 1034 ADRTRVMEYINRLDN---YDAP-----DIAEIAIENQLYEEAFAIFKKFD-------MNVSAIQVLIE----------NI 1088 (1666)
T ss_pred cChHHHHHHHHHhcc---CCch-----hHHHHHhhhhHHHHHHHHHHHhc-------ccHHHHHHHHH----------Hh
Confidence 466666766665542 1111 13445556666777777766543 23445555554 45
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 037911 184 GLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFL 263 (609)
Q Consensus 184 g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 263 (609)
+..+.|.+.-++.- .+..|..+..+-.+.|.+.+|++-|-+. .|...|.-++....+.|.+++...++
T Consensus 1089 ~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL 1156 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYL 1156 (1666)
T ss_pred hhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHH
Confidence 56666666655543 3346777777777777777777765442 45666777777777777777777777
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 037911 264 EKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSP 343 (609)
Q Consensus 264 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p 343 (609)
....+..-+|.+ =..||-+|++.+++.+..+++ ..||......+.+-|...|.++.|.-+|...
T Consensus 1157 ~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v------- 1220 (1666)
T KOG0985|consen 1157 LMARKKVREPYI--DSELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV------- 1220 (1666)
T ss_pred HHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh-------
Confidence 776666544443 345677777777766554443 1346666666666677777777666665533
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCC
Q 037911 344 DIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGR 395 (609)
Q Consensus 344 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 395 (609)
..|..|...+...|++..|.+.-++.- +..||..+-.+|...+.
T Consensus 1221 --SN~a~La~TLV~LgeyQ~AVD~aRKAn------s~ktWK~VcfaCvd~~E 1264 (1666)
T KOG0985|consen 1221 --SNFAKLASTLVYLGEYQGAVDAARKAN------STKTWKEVCFACVDKEE 1264 (1666)
T ss_pred --hhHHHHHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHhchhh
Confidence 335556666666666666655443332 34445554444444433
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.80 E-value=1e-05 Score=76.43 Aligned_cols=204 Identities=10% Similarity=0.078 Sum_probs=119.0
Q ss_pred CCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 037911 139 NNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVG-LIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLK 217 (609)
Q Consensus 139 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 217 (609)
.++.++|+....++++. .|.+..++..-.. .+...| ++++++..++++.+.. +.+..+|+....++.+
T Consensus 50 ~e~serAL~lt~~aI~l---nP~~ytaW~~R~~-------iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~ 118 (320)
T PLN02789 50 DERSPRALDLTADVIRL---NPGNYTVWHFRRL-------CLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEK 118 (320)
T ss_pred CCCCHHHHHHHHHHHHH---CchhHHHHHHHHH-------HHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHH
Confidence 34556677777777665 3344444444333 344555 4677777777777654 4455566655555555
Q ss_pred cCCh--HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc---CC--
Q 037911 218 LNCI--DQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKK---GR-- 290 (609)
Q Consensus 218 ~~~~--~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~-- 290 (609)
.|+. +++.++++++.+.. +-|..+|+....++...|+++++++.++++++.+.. |..+|+.....+.+. |.
T Consensus 119 l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 119 LGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred cCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccccc
Confidence 5542 55677776766543 345667777777777777777777777777776533 555666655544443 22
Q ss_pred --HhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 037911 291 --LNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKE----GKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCK 357 (609)
Q Consensus 291 --~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~----~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 357 (609)
.++.++...+++...+. |...|+.+...+... +...+|.+.+.+..+.+ ..+......|+..|+.
T Consensus 197 ~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 197 AMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred ccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 24566666666665444 666777666666552 33455666666655532 2345556666666654
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.80 E-value=0.00018 Score=69.27 Aligned_cols=435 Identities=11% Similarity=0.073 Sum_probs=251.9
Q ss_pred CCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCC
Q 037911 123 KPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQ 202 (609)
Q Consensus 123 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 202 (609)
+-|..+|..|++-+..+ -+++++..+++++. ..|.++.++...++ .-.+..+++....+|.+.+.. .
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~---~FP~s~r~W~~yi~-------~El~skdfe~VEkLF~RCLvk--v 83 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVN---VFPSSPRAWKLYIE-------RELASKDFESVEKLFSRCLVK--V 83 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhc---cCCCCcHHHHHHHH-------HHHHhhhHHHHHHHHHHHHHH--H
Confidence 34788888888877766 88888888888874 46677777777777 777888888888888887764 3
Q ss_pred CCHHHHHHHHHHHHh-cCChHH----HHHHHHHH-hhCCCCCC-HHHHHHHHHH---------HHHcCChHHHHHHHHHH
Q 037911 203 PSIVSCNFLLNGLLK-LNCIDQ----CWQVYEEM-GRIGICPN-THTFNILTHV---------FCKNGDVDKVNGFLEKI 266 (609)
Q Consensus 203 ~~~~~~~~ll~~~~~-~~~~~~----a~~~~~~m-~~~~~~~~-~~~~~~l~~~---------~~~~g~~~~a~~~~~~~ 266 (609)
.++..|...+.---+ .|+... ..+.|+-. .+.|..+- ...|+.-+.. |....+++...++++++
T Consensus 84 LnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqra 163 (656)
T KOG1914|consen 84 LNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRA 163 (656)
T ss_pred hhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHH
Confidence 556677766654433 222222 22223322 33343322 1223322222 33445667777777777
Q ss_pred HHcCCCCCHHhHH------HHHHH-------HHhcCCHhHHHHHHHHHhh--CCccCCHhh---------------HHHH
Q 037911 267 EEEGFDPDLVTYN------TLISS-------YCKKGRLNDAFYLYRIMYR--RNVLPDLVT---------------YTTL 316 (609)
Q Consensus 267 ~~~~~~~~~~~~~------~li~~-------~~~~g~~~~a~~~~~~~~~--~~~~p~~~~---------------~~~l 316 (609)
....+.-=...|+ .-|+. --+...+..|.+++++... +|...+..+ |..+
T Consensus 164 l~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~ 243 (656)
T KOG1914|consen 164 LVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNW 243 (656)
T ss_pred hcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHH
Confidence 6542110011121 11111 1123346677777777653 332211111 3333
Q ss_pred HHHHHhcCC--------HHHHHHHHHHHH-HCCCCCCHHHHH-----HHHHHHHHcCC-------hHHHHHHHHHHHHCC
Q 037911 317 MNGLCKEGK--------VREAHQLFHRMV-HRGLSPDIVSYN-----TLIFAYCKEGK-------MQESKSLLYEMMGNG 375 (609)
Q Consensus 317 l~~~~~~~~--------~~~a~~~~~~m~-~~g~~p~~~~~~-----~li~~~~~~g~-------~~~A~~~~~~~~~~~ 375 (609)
|.---.++- -....-++++.. -.+..|+..... ..-+.+...|+ .+++..+++..++.-
T Consensus 244 I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l 323 (656)
T KOG1914|consen 244 IKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGL 323 (656)
T ss_pred HHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence 322111110 011122222222 223344432211 11122333444 345556666555432
Q ss_pred CccCHHHHHHHHHHHH---ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHH
Q 037911 376 IYPDTFTCQIIVQGYG---KEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVP-SLE 451 (609)
Q Consensus 376 ~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~ 451 (609)
..-+..+|..+.+.-- +.++.+...+.++++......--..+|...++.-.+...+..|..+|.+..+.+..+ ++.
T Consensus 324 ~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVf 403 (656)
T KOG1914|consen 324 LKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVF 403 (656)
T ss_pred HHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhh
Confidence 2223333443333211 112356666777777665433344567778887777777799999999997766666 788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCC--HHHHHHHHHH
Q 037911 452 IYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPD--SQICRVLING 529 (609)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~ 529 (609)
++++++..||. ++.+-|.++|+--..+ ...++.--...++-+...++-..|..+|++.+..++.|+ ..+|..++..
T Consensus 404 Va~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~y 481 (656)
T KOG1914|consen 404 VAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEY 481 (656)
T ss_pred HHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHH
Confidence 89999998886 8899999999876544 213344445677778889999999999999998866655 4689999999
Q ss_pred HHccCCHHHHHHHHHHHHHcCC---CCChhcHHHHHHHHHhcCCHH
Q 037911 530 YCMEKDVNKAEALLGFFAKKFQ---IYDTESYNAVFNMFAEDGDLS 572 (609)
Q Consensus 530 ~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~ 572 (609)
-..-|+++.+.++-+++..... .+....-..+++.|.-.+.+.
T Consensus 482 ES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 482 ESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred HHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccccc
Confidence 9999999999999887765432 222234455556665555443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.4e-07 Score=83.82 Aligned_cols=254 Identities=14% Similarity=0.042 Sum_probs=168.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHH
Q 037911 319 GLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLS 398 (609)
Q Consensus 319 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 398 (609)
-+.-.|++..++.-.+ .....-..+......+.+++...|+.+.++ .++... -.|.......+...+...++-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~-~~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKS-SSPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TT-SSCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccC-CChhHHHHHHHHHHHhCccchHH
Confidence 3445688888776555 222211223344556778888889877544 333333 36677777666666655566677
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037911 399 ALNLVVELQRFGVSIS-RDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMV 477 (609)
Q Consensus 399 A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 477 (609)
++.-+++........+ .........++...|++++|++++++. .+.......+..|.+.++++.|.+.++.|.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7666665544433322 333333345666789999998888653 467778888999999999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHH----hcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC
Q 037911 478 DRNIKPSLSTYRALICCF----CGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIY 553 (609)
Q Consensus 478 ~~~~~p~~~~~~~li~~~----~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 553 (609)
+.+ .|.. ...+..++ ...+.+.+|..+|+++.+ ...+++.+++.+..++...|++++|.+++.+..... +.
T Consensus 159 ~~~--eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~-~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~ 233 (290)
T PF04733_consen 159 QID--EDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSD-KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PN 233 (290)
T ss_dssp CCS--CCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHC-CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CC
T ss_pred hcC--CcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cC
Confidence 753 4543 33344333 234579999999999876 457889999999999999999999999999988653 44
Q ss_pred ChhcHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCh
Q 037911 554 DTESYNAVFNMFAEDGDL-SKLMELQKRFLRLGFAPNN 590 (609)
Q Consensus 554 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~g~~p~~ 590 (609)
++.+...++.+....|+. +.+.+++.++... .|+.
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~--~p~h 269 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS--NPNH 269 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH--TTTS
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh--CCCC
Confidence 567777788888888888 6677888888754 5554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.2e-06 Score=82.77 Aligned_cols=251 Identities=14% Similarity=0.055 Sum_probs=168.4
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDK 258 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (609)
.+.+.|++.+|.-.|+..++.+ |-+..+|-.|...-..+++-..|+..+++..+.. +-|......|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 4678888888888888888765 5677888888888888888888888888887753 3456677777778888888888
Q ss_pred HHHHHHHHHHcCCC--------CCHHhHHHHHHHHHhcCCHhHHHHHHHHHh-hCCccCCHhhHHHHHHHHHhcCCHHHH
Q 037911 259 VNGFLEKIEEEGFD--------PDLVTYNTLISSYCKKGRLNDAFYLYRIMY-RRNVLPDLVTYTTLMNGLCKEGKVREA 329 (609)
Q Consensus 259 a~~~~~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-~~~~~p~~~~~~~ll~~~~~~~~~~~a 329 (609)
|...++..+....+ ++...-+. ..+.....+....++|-++. ..+..+|...+..|.-.|--.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 88888877654210 00000000 11222233444555555554 344446777777788788888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCH-HHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 037911 330 HQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDT-FTCQIIVQGYGKEGRLLSALNLVVELQR 408 (609)
Q Consensus 330 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 408 (609)
...|+..+... +-|...||.|...++...+.++|+.-|.+.++. .|+. .....|.-+|...|.+++|.+.|-....
T Consensus 450 iDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 88888888753 336678888888888888888888888888865 5553 4455666678888888888887765432
Q ss_pred C---------CCCCCHHHHHHHHHHHHhcCChHHHHH
Q 037911 409 F---------GVSISRDIYDYLIVALCQDNRPFAATS 436 (609)
Q Consensus 409 ~---------~~~~~~~~~~~ll~~~~~~~~~~~a~~ 436 (609)
. ...++..+|.+|=.++.-.++.+-+..
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 1 122345566666666666666553443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.2e-06 Score=77.54 Aligned_cols=190 Identities=13% Similarity=0.055 Sum_probs=119.7
Q ss_pred CCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCC
Q 037911 123 KPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQ 202 (609)
Q Consensus 123 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 202 (609)
......+..++..+...|++++|...+++++...+..+.....+..+.. .|...|++++|+..++++.+....
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~-------~~~~~~~~~~A~~~~~~~l~~~p~ 102 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAY-------AYYKSGDYAEAIAAADRFIRLHPN 102 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHH-------HHHhcCCHHHHHHHHHHHHHHCcC
Confidence 3467777888888888888888888888888764333333345555665 788888888888888888774421
Q ss_pred CCH--HHHHHHHHHHHhc--------CChHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 037911 203 PSI--VSCNFLLNGLLKL--------NCIDQCWQVYEEMGRIGICPNT-HTFNILTHVFCKNGDVDKVNGFLEKIEEEGF 271 (609)
Q Consensus 203 ~~~--~~~~~ll~~~~~~--------~~~~~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 271 (609)
... .++..+..++... |+.++|.+.|+++.+. .|+. ..+..+.... . ... ..
T Consensus 103 ~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~-~---~~~------~~----- 165 (235)
T TIGR03302 103 HPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMD-Y---LRN------RL----- 165 (235)
T ss_pred CCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHH-H---HHH------HH-----
Confidence 111 2344444455443 6678888888888764 2432 2222221110 0 000 00
Q ss_pred CCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCcc-C-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037911 272 DPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVL-P-DLVTYTTLMNGLCKEGKVREAHQLFHRMVHR 339 (609)
Q Consensus 272 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 339 (609)
......+...|.+.|++++|+..+++..+.... | ....+..+..++.+.|++++|..+++.+...
T Consensus 166 ---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 166 ---AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred ---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 001124556678888888888888888765321 2 3467778888888888888888888877664
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.7e-05 Score=73.62 Aligned_cols=208 Identities=10% Similarity=0.054 Sum_probs=143.1
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCh-
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLN-CIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDV- 256 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~- 256 (609)
.+...++.++|+...+++++.. +-+..+|+.-..++...| .+++++..++++.+.. +-+..+|+.....+.+.|+.
T Consensus 46 ~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchh
Confidence 3445667788899999988865 455667777777777777 5789999999888753 34555676665556666653
Q ss_pred -HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhc---CC----HHH
Q 037911 257 -DKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKE---GK----VRE 328 (609)
Q Consensus 257 -~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~---~~----~~~ 328 (609)
+++..+++++.+.. +-+..+|+....++...|+++++++.++++++.++. |..+|+.....+.+. |. .++
T Consensus 124 ~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 124 ANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred hHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHH
Confidence 67788888888775 347788888888888889999999999999987766 667777766555544 22 245
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----CChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHc
Q 037911 329 AHQLFHRMVHRGLSPDIVSYNTLIFAYCKE----GKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGK 392 (609)
Q Consensus 329 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 392 (609)
......+++... +-|...|+.+...+... +...+|.+.+.+..+.+ ..+......|+..|+.
T Consensus 202 el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 202 ELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 666666666552 33566777777666652 34456777777766543 2355666777777764
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.9e-06 Score=79.92 Aligned_cols=255 Identities=14% Similarity=0.088 Sum_probs=158.4
Q ss_pred HHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 037911 133 VHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLL 212 (609)
Q Consensus 133 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll 212 (609)
...+.++|+..+|.-.|+..++. .|...+.+..|.. .....++-..|+..+++..+.. +.|..+.-.|.
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkq---dP~haeAW~~LG~-------~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLA 360 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQ---DPQHAEAWQKLGI-------TQAENENEQNAISALRRCLELD-PTNLEALMALA 360 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhh---ChHHHHHHHHhhh-------HhhhccchHHHHHHHHHHHhcC-CccHHHHHHHH
Confidence 44556677777777777777754 5666777777766 6677777777777777777765 45666777777
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCC-----C---CHHHHHHHHHHHHHcCChHHHHHHHHHHH-HcCCCCCHHhHHHHHH
Q 037911 213 NGLLKLNCIDQCWQVYEEMGRIGIC-----P---NTHTFNILTHVFCKNGDVDKVNGFLEKIE-EEGFDPDLVTYNTLIS 283 (609)
Q Consensus 213 ~~~~~~~~~~~a~~~~~~m~~~~~~-----~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~li~ 283 (609)
-.|...|.-..|.+.+++-+....+ + +...-.. ..+.....+....++|-++. ..+..+|..+...|.-
T Consensus 361 VSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGV 438 (579)
T KOG1125|consen 361 VSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGV 438 (579)
T ss_pred HHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHH
Confidence 7777777777777777766432200 0 0000000 01111222334444444443 3343466777777777
Q ss_pred HHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCChH
Q 037911 284 SYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDI-VSYNTLIFAYCKEGKMQ 362 (609)
Q Consensus 284 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~ 362 (609)
.|.-.|++++|.+.|+..+...+. |...||-|...++...+.++|+..|++.++. .|+- .+...|.-.|...|.++
T Consensus 439 Ly~ls~efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~yk 515 (579)
T KOG1125|consen 439 LYNLSGEFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYK 515 (579)
T ss_pred HHhcchHHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHH
Confidence 777788888888888888776544 6777888888888888888888888888774 5553 34444566677788888
Q ss_pred HHHHHHHHHHHC---------CCccCHHHHHHHHHHHHccCCHHHHHHHH
Q 037911 363 ESKSLLYEMMGN---------GIYPDTFTCQIIVQGYGKEGRLLSALNLV 403 (609)
Q Consensus 363 ~A~~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 403 (609)
+|.+.|-..+.. +..++...|..|=.++.-.++.|-+.+..
T Consensus 516 EA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 516 EAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 888777665421 12223456666656666666666444433
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.67 E-value=0.00077 Score=69.17 Aligned_cols=451 Identities=14% Similarity=0.047 Sum_probs=242.9
Q ss_pred CChhHHHHHHHHhhhcCCCCCCHHhHHHH-HHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHH
Q 037911 104 SDSVSALTFFNWVKNDLEIKPTSSNYCLI-VHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVK 182 (609)
Q Consensus 104 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 182 (609)
+++.+|+.-.....+++ |+.....++ +-.+.+.|+.++|..+++..-.. .+.+..+...+.. .|.+
T Consensus 23 ~qfkkal~~~~kllkk~---Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~---~~~D~~tLq~l~~-------~y~d 89 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKH---PNALYAKVLKALSLFRLGKGDEALKLLEALYGL---KGTDDLTLQFLQN-------VYRD 89 (932)
T ss_pred HHHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccC---CCCchHHHHHHHH-------HHHH
Confidence 57889999888888753 333222211 33457889999999877776543 3346677777776 7899
Q ss_pred hCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC-------
Q 037911 183 VGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGD------- 255 (609)
Q Consensus 183 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~------- 255 (609)
.|+.++|+.+|++.... -|+......+..+|.+.+.+.+-.++--+|-+. ++-+.+.|=+++..+...-.
T Consensus 90 ~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~ 166 (932)
T KOG2053|consen 90 LGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLD 166 (932)
T ss_pred HhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCccccc
Confidence 99999999999998875 467777777778888888877655554444442 34455565556655544311
Q ss_pred ---hHHHHHHHHHHHHcC-CCCCHHhHHHHHHHHHhcCCHhHHHHHHH-HHhhCCccCCHhhHHHHHHHHHhcCCHHHHH
Q 037911 256 ---VDKVNGFLEKIEEEG-FDPDLVTYNTLISSYCKKGRLNDAFYLYR-IMYRRNVLPDLVTYTTLMNGLCKEGKVREAH 330 (609)
Q Consensus 256 ---~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~-~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 330 (609)
..-|...++.+.+.+ .--+..-...-...+-..|++++|++++. ...+.-..-+...-+--+..+...+++.+..
T Consensus 167 ~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~ 246 (932)
T KOG2053|consen 167 PILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELF 246 (932)
T ss_pred chhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHH
Confidence 234556666666554 11122222223345556788888988883 3333333334444455667778888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHH----------------HcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHH---H
Q 037911 331 QLFHRMVHRGLSPDIVSYNTLIFAYC----------------KEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGY---G 391 (609)
Q Consensus 331 ~~~~~m~~~g~~p~~~~~~~li~~~~----------------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~ 391 (609)
++-.++...|.. | |...+..++ ..+..+...+..++..... ....|-+-+.++ .
T Consensus 247 ~l~~~Ll~k~~D-d---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~ 319 (932)
T KOG2053|consen 247 ELSSRLLEKGND-D---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLARLELDKRYK 319 (932)
T ss_pred HHHHHHHHhCCc-c---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc---ccCcHHHHHHHHHHhc
Confidence 888888887532 2 322222211 1111222222222222211 111122222222 3
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CCHH---HHHHHHHHHHhcCC-
Q 037911 392 KEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYV--PSLE---IYNELMESLCKCDS- 465 (609)
Q Consensus 392 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~---~~~~l~~~~~~~g~- 465 (609)
.-|+.+++.-.|-+- .|..| .|..=+..|...=..+.-..++......... .+.. .+...+..-.-.|.
T Consensus 320 ~~gd~ee~~~~y~~k--fg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~ 394 (932)
T KOG2053|consen 320 LIGDSEEMLSYYFKK--FGDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLY 394 (932)
T ss_pred ccCChHHHHHHHHHH--hCCCc---HhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhcc
Confidence 446666655443221 12121 2222233333333334444455544222111 1111 12222222222332
Q ss_pred ----HHHHHHHHHHHH---HCC------CCCCHH---------HHHHHHHHHhcCCCHh---HHHHHHHHHHHCCCCCCH
Q 037911 466 ----VADALLLKDEMV---DRN------IKPSLS---------TYRALICCFCGIGRSG---EAVSLMDEMLESGMLPDS 520 (609)
Q Consensus 466 ----~~~A~~~~~~~~---~~~------~~p~~~---------~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~p~~ 520 (609)
-+.-..++.+.. ++| .-|+.. +-+.|++.+.+.++.. +|+-+++.-.... +-|.
T Consensus 395 ~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf 473 (932)
T KOG2053|consen 395 EKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNF 473 (932)
T ss_pred ccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccH
Confidence 233334443332 223 223322 2355666777776654 4555566555432 3345
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037911 521 QICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRL 584 (609)
Q Consensus 521 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 584 (609)
.+--.++..|+-.|-+..|.++++.+--+.+.-|...|. +...+...|++..+...++...+.
T Consensus 474 ~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkf 536 (932)
T KOG2053|consen 474 QTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKF 536 (932)
T ss_pred HHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHHHHH
Confidence 555677888888888888888888777655544443332 334556678888888888777643
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.8e-06 Score=82.66 Aligned_cols=234 Identities=14% Similarity=0.077 Sum_probs=174.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHH
Q 037911 311 VTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGY 390 (609)
Q Consensus 311 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 390 (609)
..-..+...+...|-...|..+|++.. .|..+|.+|+..|+..+|..+..+..++ +||...|..+.+..
T Consensus 399 q~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVL 467 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhc
Confidence 334566777888899999999998765 4667888999999999999998888874 78888888888888
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037911 391 GKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADAL 470 (609)
Q Consensus 391 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 470 (609)
....-+++|.++.+..... .-..+.....+.+++.++.+.++.-.+.+ +....+|-.+..+..+.+++..|.
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHH
Confidence 7777788888888764332 22233333445678888888888775544 446678888888888889999999
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 037911 471 LLKDEMVDRNIKPS-LSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKK 549 (609)
Q Consensus 471 ~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 549 (609)
+.|....... || ...||.+-.+|.+.++-.+|...+.++.+.+ .-+..+|...+....+-|.+++|.+.+..+...
T Consensus 540 ~aF~rcvtL~--Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 540 KAFHRCVTLE--PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHHhhcC--CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 9888877643 54 4679999999999999999999999998876 445667777777888889999999888877654
Q ss_pred CC-CCChhcHHHHHHHHH
Q 037911 550 FQ-IYDTESYNAVFNMFA 566 (609)
Q Consensus 550 ~~-~~~~~~~~~l~~~~~ 566 (609)
.. ..|..+...++....
T Consensus 617 ~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 617 RKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred hhhcccchhhHHHHHHHH
Confidence 33 224555555554443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.9e-08 Score=56.96 Aligned_cols=29 Identities=31% Similarity=0.636 Sum_probs=11.1
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 037911 237 CPNTHTFNILTHVFCKNGDVDKVNGFLEK 265 (609)
Q Consensus 237 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 265 (609)
.||..||+.||++||+.|++++|.++|++
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 33333333333333333333333333333
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.9e-05 Score=82.45 Aligned_cols=149 Identities=9% Similarity=0.039 Sum_probs=127.8
Q ss_pred CCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCC
Q 037911 121 EIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVG 200 (609)
Q Consensus 121 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 200 (609)
.+.+++..+..|+.+..+.|.+++|..+++.+.+. .|........+.. .+.+.+++++|+..+++..+..
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~---~Pd~~~a~~~~a~-------~L~~~~~~eeA~~~~~~~l~~~ 150 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR---FPDSSEAFILMLR-------GVKRQQGIEAGRAEIELYFSGG 150 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh---CCCcHHHHHHHHH-------HHHHhccHHHHHHHHHHHhhcC
Confidence 36788999999999999999999999999999976 6777888888887 8999999999999999999876
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHH
Q 037911 201 FQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNT 280 (609)
Q Consensus 201 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 280 (609)
+.+....+.+..++.+.|++++|..+|+++...+ +-+..++..+...+.+.|+.++|...|++..+.. .+....|+.
T Consensus 151 -p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~ 227 (694)
T PRK15179 151 -SSSAREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTR 227 (694)
T ss_pred -CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHH
Confidence 5677778888899999999999999999999743 4458899999999999999999999999988762 334455554
Q ss_pred HH
Q 037911 281 LI 282 (609)
Q Consensus 281 li 282 (609)
++
T Consensus 228 ~~ 229 (694)
T PRK15179 228 RL 229 (694)
T ss_pred HH
Confidence 44
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.0011 Score=67.96 Aligned_cols=234 Identities=13% Similarity=0.089 Sum_probs=158.0
Q ss_pred hhHHHHHhhhccCC--ChhhhhhhhhcCcCCCCChHHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHH
Q 037911 60 KIVDLICSSLKKGD--SHLTLLQNDLKPLLPHLGAHEISRVLLRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILA 137 (609)
Q Consensus 60 ~~~~~~~~~l~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~ 137 (609)
..++-|+..++..+ .++....+.++.+|..+.+..+.+......|..+.|+..++.... .+ ..|..+...+..+|.
T Consensus 11 rr~rpi~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~-~~-~~D~~tLq~l~~~y~ 88 (932)
T KOG2053|consen 11 RRLRPIYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYG-LK-GTDDLTLQFLQNVYR 88 (932)
T ss_pred HHHhHHHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhcc-CC-CCchHHHHHHHHHHH
Confidence 34555666555432 455666677888888877777777777777899999987776653 22 348899999999999
Q ss_pred hCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 037911 138 WNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLK 217 (609)
Q Consensus 138 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 217 (609)
+.|++++|..+|+.+... .|. ......++. +|++.+++.+-.++--++-+ .++.+...+=+++..+.+
T Consensus 89 d~~~~d~~~~~Ye~~~~~---~P~-eell~~lFm-------ayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilq 156 (932)
T KOG2053|consen 89 DLGKLDEAVHLYERANQK---YPS-EELLYHLFM-------AYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQ 156 (932)
T ss_pred HHhhhhHHHHHHHHHHhh---CCc-HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHH
Confidence 999999999999999965 444 666666666 89998888776666555555 234555555566665554
Q ss_pred cCC----------hHHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHH-HHHHcCCCCCHHhHHHHHHHH
Q 037911 218 LNC----------IDQCWQVYEEMGRIG-ICPNTHTFNILTHVFCKNGDVDKVNGFLE-KIEEEGFDPDLVTYNTLISSY 285 (609)
Q Consensus 218 ~~~----------~~~a~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~~li~~~ 285 (609)
... ..-|...++.+.+.+ -.-+..-...-...+...|.+++|.+++. ...+.-..-+...-+--+..+
T Consensus 157 s~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dll 236 (932)
T KOG2053|consen 157 SIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLL 236 (932)
T ss_pred hccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 211 234666777766543 21222222233344567788999999984 444433333455556677888
Q ss_pred HhcCCHhHHHHHHHHHhhCCcc
Q 037911 286 CKKGRLNDAFYLYRIMYRRNVL 307 (609)
Q Consensus 286 ~~~g~~~~a~~~~~~~~~~~~~ 307 (609)
...+++.+..++-.++...|..
T Consensus 237 k~l~~w~~l~~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 237 KLLNRWQELFELSSRLLEKGND 258 (932)
T ss_pred HHhcChHHHHHHHHHHHHhCCc
Confidence 8899999999999998887653
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.1e-05 Score=78.24 Aligned_cols=209 Identities=16% Similarity=0.131 Sum_probs=158.1
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDK 258 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (609)
.+...|-...|+.+|+++. .|.-++.+|+..|+.++|..+..+..++ +||...|..+.+.....--+++
T Consensus 407 ll~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yEk 475 (777)
T KOG1128|consen 407 LLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYEK 475 (777)
T ss_pred HHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHHH
Confidence 7888899999999998765 5677888888888888888888877763 6888888888877766666788
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037911 259 VNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVH 338 (609)
Q Consensus 259 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 338 (609)
|.++.+....+ +-..+.......++++++.+.|+.-.+.+.- -..+|-.+..+..+.+++..|.+.|.....
T Consensus 476 awElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av~aF~rcvt 547 (777)
T KOG1128|consen 476 AWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAVKAFHRCVT 547 (777)
T ss_pred HHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHHHHHHHHhh
Confidence 88887765432 1122222233478888888888887765432 456777788888888899999998888876
Q ss_pred CCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 037911 339 RGLSP-DIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRF 409 (609)
Q Consensus 339 ~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 409 (609)
. .| +...||.+-.+|.+.++-.+|...+.+..+-+ .-+...|...+-...+.|.+++|++.+.++...
T Consensus 548 L--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 548 L--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred c--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 4 44 45778999999999999999999998888776 345566777777778888888888888877553
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.6e-05 Score=81.14 Aligned_cols=205 Identities=10% Similarity=0.038 Sum_probs=108.3
Q ss_pred HHhHHHHHHHHHhcCCHhHHHHHHHHHhhC-CccC---CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 037911 275 LVTYNTLISSYCKKGRLNDAFYLYRIMYRR-NVLP---DLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNT 350 (609)
Q Consensus 275 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 350 (609)
...|-..|......++.++|.++.++.+.. ++.- -...|.++++.-..-|.-+...++|+++.+. --....|..
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~~ 1535 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHLK 1535 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHHH
Confidence 445666666666666666666666666542 1110 1234555555555555555666666666553 112344556
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcC
Q 037911 351 LIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVS-ISRDIYDYLIVALCQDN 429 (609)
Q Consensus 351 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~ 429 (609)
|...|.+.+.+++|.++++.|.++ ..-....|...+..+.+.++-+.|..++.+..+.-.. -........+..-.+.|
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence 666666666666666666666654 2234455666666666666666666666655543211 01222333334444555
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 037911 430 RPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKP 483 (609)
Q Consensus 430 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 483 (609)
+.+.+..+|+...... +.....|+..++.-.++|+.+.+..+|+++...++.|
T Consensus 1615 DaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred CchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 5555555555554432 3344555555555555555555555555555554433
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.4e-05 Score=69.78 Aligned_cols=151 Identities=17% Similarity=0.118 Sum_probs=63.4
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDK 258 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (609)
.+.-.|+-+.+..+....... .+.+....+..+....+.|++..|...+.+..... ++|...|+.+.-+|.+.|+++.
T Consensus 75 a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~ 152 (257)
T COG5010 75 ALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDE 152 (257)
T ss_pred HHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhH
Confidence 344444444444444433221 12333333334444444444444444444443321 3444444444444444444444
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 037911 259 VNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLF 333 (609)
Q Consensus 259 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 333 (609)
|..-|.+..+.- .-+...+|.+...+.-.|+.+.|..++......+.. |...-..+.......|++++|..+.
T Consensus 153 Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 153 ARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred HHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 444444444331 112334444444444444444444444444433222 3333334444444444444444443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.58 E-value=9.7e-06 Score=70.83 Aligned_cols=161 Identities=14% Similarity=0.107 Sum_probs=124.9
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 037911 130 CLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCN 209 (609)
Q Consensus 130 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 209 (609)
..+...+...|+-+....+...... ..+.+..+....+. ...+.|++.+|+..|+++.... ++|...|+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~---~~~~d~~ll~~~gk-------~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~ 138 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI---AYPKDRELLAAQGK-------NQIRNGNFGEAVSVLRKAARLA-PTDWEAWN 138 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc---cCcccHHHHHHHHH-------HHHHhcchHHHHHHHHHHhccC-CCChhhhh
Confidence 5666777777777777777766553 34566666766777 7888999999999999888765 78888899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 037911 210 FLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKG 289 (609)
Q Consensus 210 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 289 (609)
.+.-+|.+.|+++.|..-|.+..+. ..-+....+.|.-.+.-.|+.+.|+.++......+ .-|..+-..+.......|
T Consensus 139 ~lgaaldq~Gr~~~Ar~ay~qAl~L-~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g 216 (257)
T COG5010 139 LLGAALDQLGRFDEARRAYRQALEL-APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQG 216 (257)
T ss_pred HHHHHHHHccChhHHHHHHHHHHHh-ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcC
Confidence 9999999999999999988888774 23456677788888888899999999988887764 336777788888888899
Q ss_pred CHhHHHHHHHHHhh
Q 037911 290 RLNDAFYLYRIMYR 303 (609)
Q Consensus 290 ~~~~a~~~~~~~~~ 303 (609)
++++|.++-..-..
T Consensus 217 ~~~~A~~i~~~e~~ 230 (257)
T COG5010 217 DFREAEDIAVQELL 230 (257)
T ss_pred ChHHHHhhcccccc
Confidence 99998887655443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.56 E-value=6.1e-05 Score=80.28 Aligned_cols=227 Identities=12% Similarity=0.120 Sum_probs=122.1
Q ss_pred CCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 037911 159 CPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDV-GFQP---SIVSCNFLLNGLLKLNCIDQCWQVYEEMGRI 234 (609)
Q Consensus 159 ~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 234 (609)
.|.+.-.|...+. .....++.++|.+++++++.. +++- -...|.++++.-...|.-+...++|+++.+.
T Consensus 1454 sPNSSi~WI~YMa-------f~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy 1526 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMA-------FHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY 1526 (1710)
T ss_pred CCCcchHHHHHHH-------HHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh
Confidence 3444444555554 455555555555555555431 1111 1124555555555556666666666666653
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccC-CHhhH
Q 037911 235 GICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLP-DLVTY 313 (609)
Q Consensus 235 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~ 313 (609)
...-..|..|...|.+.+.+++|.++++.|.+. +.-....|...+..+.++.+-+.|..++.+..+.=++- .....
T Consensus 1527 --cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~I 1603 (1710)
T KOG1070|consen 1527 --CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFI 1603 (1710)
T ss_pred --cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHH
Confidence 222344556666666666666666666666654 12345566666666666666666666666665431110 12222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCH--HHHHHHHHHHH
Q 037911 314 TTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDT--FTCQIIVQGYG 391 (609)
Q Consensus 314 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~ 391 (609)
...+..-.+.|+.+.+..+|+..... .+.-...|+..|++-.+.|+.+.+..+|++++..++.|-- ..|...+..=-
T Consensus 1604 skfAqLEFk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk 1682 (1710)
T KOG1070|consen 1604 SKFAQLEFKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEK 1682 (1710)
T ss_pred HHHHHHHhhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHH
Confidence 33333444566666666666666654 2334556666666666666666666777666666554432 23444444333
Q ss_pred ccCCH
Q 037911 392 KEGRL 396 (609)
Q Consensus 392 ~~~~~ 396 (609)
+.|+-
T Consensus 1683 ~~Gde 1687 (1710)
T KOG1070|consen 1683 SHGDE 1687 (1710)
T ss_pred hcCch
Confidence 44443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.1e-05 Score=73.96 Aligned_cols=181 Identities=12% Similarity=0.055 Sum_probs=123.8
Q ss_pred HHHhcCCChhHHHHHHHHhhhcCCCCC-CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccc
Q 037911 98 VLLRCQSDSVSALTFFNWVKNDLEIKP-TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDC 176 (609)
Q Consensus 98 ~l~~~~~~~~~A~~~f~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (609)
......++++.|...|+.+.......+ ...++..++.++...|++++|...++++++..++.+.....+..+..
T Consensus 41 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~----- 115 (235)
T TIGR03302 41 KEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGL----- 115 (235)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHH-----
Confidence 344566899999999999986432222 23578889999999999999999999999875544443334444444
Q ss_pred hhHHHHh--------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 037911 177 NWAYVKV--------GLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTH 248 (609)
Q Consensus 177 ~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 248 (609)
.+... |++++|++.|+++.+.. +.+...+..+..... .. .... .....+..
T Consensus 116 --~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~------~~~~--------~~~~~~a~ 174 (235)
T TIGR03302 116 --SNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LR------NRLA--------GKELYVAR 174 (235)
T ss_pred --HHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HH------HHHH--------HHHHHHHH
Confidence 45444 78999999999998754 223333332221111 00 0000 11124566
Q ss_pred HHHHcCChHHHHHHHHHHHHcCC--CCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhC
Q 037911 249 VFCKNGDVDKVNGFLEKIEEEGF--DPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRR 304 (609)
Q Consensus 249 ~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 304 (609)
.+.+.|++++|...++...+... +.....+..+..++.+.|++++|...++.+...
T Consensus 175 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 175 FYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 78889999999999999887621 123567888899999999999999998888765
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.00023 Score=62.46 Aligned_cols=249 Identities=14% Similarity=0.129 Sum_probs=158.6
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDK 258 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (609)
.|.-.|.+..++..-+..... +.++..--.+-++|...|++..... +... |-.|.......+.......++.++
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~---eI~~-~~~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVIS---EIKE-GKATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccc---cccc-ccCChHHHHHHHHHHhhCcchhHH
Confidence 566677777777665554432 2344444455667777777654433 2222 113334444444444444555444
Q ss_pred HH-HHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037911 259 VN-GFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMV 337 (609)
Q Consensus 259 a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 337 (609)
-+ ++.+.+.......+......-...|++.|++++|++..+... +......=...+.+..+++-|.+.++.|.
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq 164 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQ 164 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 445555554333343444444567889999999999887622 33344444556678889999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 037911 338 HRGLSPDIVSYNTLIFAYCK----EGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSI 413 (609)
Q Consensus 338 ~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 413 (609)
+.. +..|.+.|..++.+ .+++.+|.-+|++|-++ ..|+..+.+....++...|++++|..++++.......
T Consensus 165 ~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~- 239 (299)
T KOG3081|consen 165 QID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK- 239 (299)
T ss_pred ccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-
Confidence 752 55666666666653 45688999999999874 5788888898899999999999999999998887644
Q ss_pred CHHHHHHHHHHHHhcCChHHH-HHHHHHHHhC
Q 037911 414 SRDIYDYLIVALCQDNRPFAA-TSLLERIGQD 444 (609)
Q Consensus 414 ~~~~~~~ll~~~~~~~~~~~a-~~~~~~~~~~ 444 (609)
++.+...++..-...|...++ .+.+..+...
T Consensus 240 dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 240 DPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 566666666655556654443 3455555443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=7.1e-05 Score=78.99 Aligned_cols=170 Identities=12% Similarity=0.086 Sum_probs=112.3
Q ss_pred CCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCC
Q 037911 124 PTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQP 203 (609)
Q Consensus 124 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 203 (609)
.+...+..|+..+...|++++|.+++++.++. .|.....|-.+.- .+.+.++..++..+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~---~P~~i~~yy~~G~-------l~~q~~~~~~~~lv----------- 87 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE---HKKSISALYISGI-------LSLSRRPLNDSNLL----------- 87 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCcceehHHHHHH-------HHHhhcchhhhhhh-----------
Confidence 37888889999998999999999999977765 3334444433333 45666665555444
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 037911 204 SIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLIS 283 (609)
Q Consensus 204 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 283 (609)
.++.......++..+..++..|... .-+...+..+..+|-+.|+.++|..+++++.+.. +-|+.+.|.+..
T Consensus 88 ------~~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY 158 (906)
T PRK14720 88 ------NLIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLAT 158 (906)
T ss_pred ------hhhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHH
Confidence 2333334444554444555555553 3455577777888888888888888888888776 446777888888
Q ss_pred HHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037911 284 SYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHR 339 (609)
Q Consensus 284 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 339 (609)
.|... ++++|++++.+.... +...+++.++.++|.++...
T Consensus 159 ~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 159 SYEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence 88877 888888887776654 34445555666666665554
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.6e-05 Score=68.51 Aligned_cols=119 Identities=9% Similarity=0.030 Sum_probs=75.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HccCC--HHHH
Q 037911 463 CDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGY-CMEKD--VNKA 539 (609)
Q Consensus 463 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A 539 (609)
.++.+++...++...+.+. .|...|..+...|...|++++|...|+++.+.. +-+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 4555666666666655432 456667777777777777777777777776543 33555666666653 45555 4777
Q ss_pred HHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037911 540 EALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRL 584 (609)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 584 (609)
.+++++..+.. +.+...+..+...+.+.|++++|+..|+++++.
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 77777777653 224566666777777777777777777777654
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=9e-05 Score=77.47 Aligned_cols=137 Identities=13% Similarity=0.077 Sum_probs=81.7
Q ss_pred CCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC
Q 037911 158 DCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGIC 237 (609)
Q Consensus 158 ~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~ 237 (609)
..+.+.+.+..|.. ...+.|++++|..+++.+.+.. +.+......+..++.+.+++++|...+++..... +
T Consensus 81 ~~~~~~~~~~~La~-------i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p 151 (694)
T PRK15179 81 RYPHTELFQVLVAR-------ALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-S 151 (694)
T ss_pred hccccHHHHHHHHH-------HHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-C
Confidence 35555666666666 6666666666666666666643 3344555556666666666666666666666542 2
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhC
Q 037911 238 PNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRR 304 (609)
Q Consensus 238 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 304 (609)
-+......+..++.+.|++++|..+|+++...+ +-+..++..+..++.+.|+.++|...|++..+.
T Consensus 152 ~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 152 SSAREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred CCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 334445555556666666666666666666532 223555666666666666666666666666543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00013 Score=77.19 Aligned_cols=239 Identities=11% Similarity=0.146 Sum_probs=161.9
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHH
Q 037911 202 QPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTH-TFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNT 280 (609)
Q Consensus 202 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 280 (609)
+.+...+..|+..+...+++++|.++.++..+. .|+.. .|-.+...+.+.++.+.+.-+ .
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~ 88 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------N 88 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------h
Confidence 345678889999999999999999999977664 45543 333333356666664444433 3
Q ss_pred HHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 037911 281 LISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGK 360 (609)
Q Consensus 281 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 360 (609)
++.......++.-+..+...|.+.+- +...+..+..+|-+.|+.++|..+|+++.+.. +-|..+.|.+...|... +
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~~~--~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLYGE--NKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhhhh--hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 34444455566555556666665432 45577888899999999999999999999886 45788889999999888 9
Q ss_pred hHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 037911 361 MQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLER 440 (609)
Q Consensus 361 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 440 (609)
+++|..++.+.+.. +...+++.++.++|.++....+. +...+ .++.+.
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f----------------~~i~~k 212 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFF----------------LRIERK 212 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHH----------------HHHHHH
Confidence 99999988887654 56667888888888888876432 22222 222222
Q ss_pred HHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 037911 441 IGQD-GYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFC 496 (609)
Q Consensus 441 ~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 496 (609)
+... +..--..++-.+-..|...++++++..+++.+.+... -|..+..-++.+|.
T Consensus 213 i~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~-~n~~a~~~l~~~y~ 268 (906)
T PRK14720 213 VLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDN-KNNKAREELIRFYK 268 (906)
T ss_pred HHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCC-cchhhHHHHHHHHH
Confidence 2111 2233445566666777778888888888888887653 24455666666664
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.1e-05 Score=66.94 Aligned_cols=104 Identities=12% Similarity=-0.060 Sum_probs=69.6
Q ss_pred HHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHh
Q 037911 488 YRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAE 567 (609)
Q Consensus 488 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 567 (609)
+..+...+...|++++|...|+.+.... +.+...+..+..++...|++++|...|+...... +.+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 4445566667777777777777777543 3456667777777777777777777777777542 3355667777777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 037911 568 DGDLSKLMELQKRFLRLGFAPNNLTCKY 595 (609)
Q Consensus 568 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 595 (609)
.|++++|++.|++.++. .|+...+..
T Consensus 105 ~g~~~eAi~~~~~Al~~--~p~~~~~~~ 130 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM--SYADASWSE 130 (144)
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHH
Confidence 77777777777777743 565544443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.9e-05 Score=65.56 Aligned_cols=95 Identities=9% Similarity=-0.035 Sum_probs=60.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHH
Q 037911 129 YCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSC 208 (609)
Q Consensus 129 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 208 (609)
+.....++...|++++|...|+.++.. .|.+..++..+.. .+.+.|++++|+..|+++.+.+ +.+...+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~-------~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~ 95 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMA---QPWSWRAHIALAG-------TWMMLKEYTTAINFYGHALMLD-ASHPEPV 95 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCcHHHHHHHHH-------HHHHHhhHHHHHHHHHHHHhcC-CCCcHHH
Confidence 444566666667777777776666644 4455666666665 6666777777777777766654 4556666
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhC
Q 037911 209 NFLLNGLLKLNCIDQCWQVYEEMGRI 234 (609)
Q Consensus 209 ~~ll~~~~~~~~~~~a~~~~~~m~~~ 234 (609)
..+..++...|+.++|...|+...+.
T Consensus 96 ~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 96 YQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66666666667777777666666553
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00016 Score=69.15 Aligned_cols=111 Identities=14% Similarity=0.108 Sum_probs=50.8
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhcCCHhHHH
Q 037911 217 KLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPD-LVTYNTLISSYCKKGRLNDAF 295 (609)
Q Consensus 217 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~ 295 (609)
..|++++|+..++.+.+. .+-|.+........+.+.++.++|.+.++++... .|+ ....-.+..+|.+.|++.+|+
T Consensus 318 ~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 318 LAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHH
Confidence 344455555555554442 2233333334444455555555555555554443 233 333334444555555555555
Q ss_pred HHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHH
Q 037911 296 YLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQ 331 (609)
Q Consensus 296 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 331 (609)
.+++........ |...|..|..+|...|+..++..
T Consensus 395 ~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 395 RILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHH
Confidence 555544443322 44455555555555554444433
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.0003 Score=61.72 Aligned_cols=117 Identities=21% Similarity=0.253 Sum_probs=54.9
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHh----c
Q 037911 248 HVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCK----E 323 (609)
Q Consensus 248 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~ 323 (609)
..|+..|++++|.+..+... +......=+..+.+..+++-|.+.+++|.+.. +..|.+.|..++.+ .
T Consensus 116 ~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccc
Confidence 34555555555555554411 12222222233444455555555555555431 33444444433332 2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 037911 324 GKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGN 374 (609)
Q Consensus 324 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 374 (609)
+.+.+|.-+|++|.++ ..|+..+.+-...++...|++++|..++++.+.+
T Consensus 187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 3355555555555543 3455555555555555555555555555555544
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=3e-05 Score=68.08 Aligned_cols=119 Identities=12% Similarity=0.137 Sum_probs=67.6
Q ss_pred hCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH-HHcCC--hHHH
Q 037911 183 VGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVF-CKNGD--VDKV 259 (609)
Q Consensus 183 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~-~~~g~--~~~a 259 (609)
.++.++++..+++.++.+ +.+...|..+...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 344455555555555543 4555666666666666666666666666665542 23445555555543 44454 3666
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhC
Q 037911 260 NGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRR 304 (609)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 304 (609)
.+++++..+.+ +-+..++..+...+.+.|++++|+..|+++.+.
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66666666553 224555666666666666666666666666654
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00066 Score=59.17 Aligned_cols=186 Identities=14% Similarity=0.125 Sum_probs=114.9
Q ss_pred CCHHHHHHHHHHHHHC---C-CCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCH-HHHHHHHHHHHccCCHH
Q 037911 324 GKVREAHQLFHRMVHR---G-LSPDIV-SYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDT-FTCQIIVQGYGKEGRLL 397 (609)
Q Consensus 324 ~~~~~a~~~~~~m~~~---g-~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~ 397 (609)
.+.++..+++.++... | ..++.. .|..++-+....|+.+.|..+++.+... + |.. ..-..-.-.+-..|.++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchh
Confidence 3455566666555432 3 344443 3444455555667777777777776655 2 332 22222222344567777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037911 398 SALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMV 477 (609)
Q Consensus 398 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 477 (609)
+|+++++.+.+.+ +.|..++..-+.+.-..|+..+|++.+.+..+. +..|...|.-+...|...|++++|.-.+++++
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 7777777777765 445666666666666677777787777777554 46688888888888888888888888888887
Q ss_pred HCCCCCCHHHHHHHHHHHhc---CCCHhHHHHHHHHHHHC
Q 037911 478 DRNIKPSLSTYRALICCFCG---IGRSGEAVSLMDEMLES 514 (609)
Q Consensus 478 ~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~ 514 (609)
-..+ -++..+..+...+.- ..+.+-|.++|.+.++.
T Consensus 182 l~~P-~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 182 LIQP-FNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 6432 233444455554433 33556678888888764
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0011 Score=57.92 Aligned_cols=188 Identities=14% Similarity=0.053 Sum_probs=142.4
Q ss_pred cCChHHHHHHHHHHHHC---C-CccCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 037911 358 EGKMQESKSLLYEMMGN---G-IYPDTF-TCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPF 432 (609)
Q Consensus 358 ~g~~~~A~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 432 (609)
..+.++..+++.+++.. | ..++.. .|..++-+....|+.+.|...++.+...- +-+..+-..-.-.+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 45677888888777642 3 445553 36666777788899999999999987764 334444433344566778899
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHH
Q 037911 433 AATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEML 512 (609)
Q Consensus 433 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 512 (609)
+|.+.++.+...+ +.|..++-.-+...-..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-++++++
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 9999999998776 567777777677777778888999888888876 55799999999999999999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHHc
Q 037911 513 ESGMLPDSQICRVLINGYCMEK---DVNKAEALLGFFAKK 549 (609)
Q Consensus 513 ~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~ 549 (609)
-.. +-++..+..+...+.-.| +.+.|.+++.+..+.
T Consensus 182 l~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 182 LIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 643 345556667777766655 577899999998866
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.4e-05 Score=62.99 Aligned_cols=108 Identities=16% Similarity=0.066 Sum_probs=69.5
Q ss_pred HHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHH
Q 037911 486 STYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMF 565 (609)
Q Consensus 486 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 565 (609)
.....+...+...|++++|...++.+...+ +.+...+..+...+...|++++|..+++...+.. +.+...+..+..+|
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 334455566666777777777777776543 3355666677777777777777777777766543 33455666667777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 037911 566 AEDGDLSKLMELQKRFLRLGFAPNNLTCKYMI 597 (609)
Q Consensus 566 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 597 (609)
...|++++|.+.|++.++. .|+...+..+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~ 125 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI--CGENPEYSELK 125 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh--ccccchHHHHH
Confidence 7777777777777777744 45655544443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.24 E-value=6.7e-05 Score=62.53 Aligned_cols=127 Identities=17% Similarity=0.139 Sum_probs=66.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCH--H
Q 037911 129 YCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSI--V 206 (609)
Q Consensus 129 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~ 206 (609)
|..++..+ ..++...+...++.+....++.+........+.. .+...|++++|...|+.+.+....++. .
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~-------~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~ 86 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAK-------AAYEQGDYDEAKAALEKALANAPDPELKPL 86 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHH-------HHHHCCCHHHHHHHHHHHHhhCCCHHHHHH
Confidence 33333333 3666666666667766653332222333333334 566667777777777776665422221 1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 037911 207 SCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEK 265 (609)
Q Consensus 207 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 265 (609)
....|...+...|++++|+..++..... ......+.....++.+.|+.++|...|+.
T Consensus 87 a~l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 87 ARLRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3333455666666666666666553221 22334444555566666666666666654
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00067 Score=64.98 Aligned_cols=149 Identities=13% Similarity=0.114 Sum_probs=112.4
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCC
Q 037911 125 TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPS 204 (609)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 204 (609)
....+.-..-.....|.+++|+..++.++.. .|.+......... .+.+.++.++|.+.++++.... |+
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~-------i~~~~nk~~~A~e~~~kal~l~--P~ 372 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAA---QPDNPYYLELAGD-------ILLEANKAKEAIERLKKALALD--PN 372 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHh---CCCCHHHHHHHHH-------HHHHcCChHHHHHHHHHHHhcC--CC
Confidence 3445555556667778888899988888865 5566666666666 7888899999999998888754 44
Q ss_pred -HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 037911 205 -IVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLIS 283 (609)
Q Consensus 205 -~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 283 (609)
....-.+..+|.+.|+.++|+.++++.... .+-|...|..|..+|...|+..++..-..+.
T Consensus 373 ~~~l~~~~a~all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~----------------- 434 (484)
T COG4783 373 SPLLQLNLAQALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEG----------------- 434 (484)
T ss_pred ccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHH-----------------
Confidence 556667778888888888888888888765 4677888888888888888888777666543
Q ss_pred HHHhcCCHhHHHHHHHHHhhC
Q 037911 284 SYCKKGRLNDAFYLYRIMYRR 304 (609)
Q Consensus 284 ~~~~~g~~~~a~~~~~~~~~~ 304 (609)
|.-.|++++|...+....+.
T Consensus 435 -~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 435 -YALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred -HHhCCCHHHHHHHHHHHHHh
Confidence 44568888888888777764
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.20 E-value=8.2e-05 Score=61.36 Aligned_cols=89 Identities=11% Similarity=0.025 Sum_probs=60.2
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDK 258 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (609)
.+...|++++|.+.|+.+.+.+ +.+...+..+...+...|++++|...++...+.+ +.+...+..+...+...|++++
T Consensus 26 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~ 103 (135)
T TIGR02552 26 NLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGEPES 103 (135)
T ss_pred HHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCCHHH
Confidence 6667777777777777776654 4466666667777777777777777777766543 3445666666666777777777
Q ss_pred HHHHHHHHHHc
Q 037911 259 VNGFLEKIEEE 269 (609)
Q Consensus 259 a~~~~~~~~~~ 269 (609)
|...++...+.
T Consensus 104 A~~~~~~al~~ 114 (135)
T TIGR02552 104 ALKALDLAIEI 114 (135)
T ss_pred HHHHHHHHHHh
Confidence 77777766655
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00013 Score=60.83 Aligned_cols=126 Identities=13% Similarity=0.133 Sum_probs=79.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCC--HHHHHHHHH
Q 037911 453 YNELMESLCKCDSVADALLLKDEMVDRNIKPSL--STYRALICCFCGIGRSGEAVSLMDEMLESGMLPD--SQICRVLIN 528 (609)
Q Consensus 453 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~ 528 (609)
|..++..+ ..++...+...++.+.+....-.. ...-.+...+...|++++|...|+.+......|+ ......|..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 44444444 357777777777777765321111 2223344667778888888888888877542222 123445677
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHH
Q 037911 529 GYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRF 581 (609)
Q Consensus 529 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 581 (609)
.+...|++++|...++..... ......+....++|.+.|++++|.+.|++.
T Consensus 94 ~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 777888888888888664322 334456677778888888888888888764
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00012 Score=70.64 Aligned_cols=125 Identities=15% Similarity=0.186 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037911 451 EIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGY 530 (609)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 530 (609)
.....|+..+...++++.|..+|+++.+.. |+. ...++..+...++-.+|++++++.++.. +-+...+..-...|
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 444556666667788888888888888765 443 3446677777778888888888888642 44667777777788
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCCh-hcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037911 531 CMEKDVNKAEALLGFFAKKFQIYDT-ESYNAVFNMFAEDGDLSKLMELQKRFL 582 (609)
Q Consensus 531 ~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~ 582 (609)
.+.++++.|.++.+++.+. .|+. .+|..|+.+|...|++++|+..++.+-
T Consensus 245 l~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 8888888888888888876 5544 688888888888888888888887764
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.08 E-value=7.4e-06 Score=48.93 Aligned_cols=35 Identities=26% Similarity=0.528 Sum_probs=31.1
Q ss_pred hcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 037911 556 ESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNN 590 (609)
Q Consensus 556 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 590 (609)
.+|+.++.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 36899999999999999999999999999999873
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0026 Score=57.93 Aligned_cols=69 Identities=19% Similarity=0.110 Sum_probs=46.4
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCC
Q 037911 125 TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVG 200 (609)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 200 (609)
++..+...+..+...|++++|.+.|+++....+..+......-.++. +|.+.+++++|+..+++.++.-
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~-------ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIY-------AYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-------HHHhcCCHHHHHHHHHHHHHhC
Confidence 45555566667777888888888888888764333222223334444 7788888888888888887753
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.3e-05 Score=47.90 Aligned_cols=33 Identities=58% Similarity=1.123 Sum_probs=15.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 037911 312 TYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPD 344 (609)
Q Consensus 312 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~ 344 (609)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 344444444444444444444444444444443
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0017 Score=61.12 Aligned_cols=199 Identities=14% Similarity=0.224 Sum_probs=100.8
Q ss_pred HHHHHhCCChhHHHHHHHHHHHhhCCCC---CcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 037911 133 VHILAWNNKFSFAMKMLCELVELVKDCP---HSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCN 209 (609)
Q Consensus 133 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 209 (609)
++.|-..|++++|...|..+........ .....|..... +.+.+++++|++.++++
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~--------~~k~~~~~~Ai~~~~~A------------- 100 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAAN--------CYKKGDPDEAIECYEKA------------- 100 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH--------HHHHTTHHHHHHHHHHH-------------
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------HHHhhCHHHHHHHHHHH-------------
Confidence 3456667788888877777755421111 11122222222 22333666666555544
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHHc----CCCCC--HHhHHHHH
Q 037911 210 FLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKN-GDVDKVNGFLEKIEEE----GFDPD--LVTYNTLI 282 (609)
Q Consensus 210 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~----~~~~~--~~~~~~li 282 (609)
+..|...|++..|-.++.++- ..|... |++++|.+.|++..+. | .+. ..++..+.
T Consensus 101 --~~~y~~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A 162 (282)
T PF14938_consen 101 --IEIYREAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAA 162 (282)
T ss_dssp --HHHHHHCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHH
T ss_pred --HHHHHhcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHH
Confidence 345666677766666655543 334455 6777777777765542 2 111 23455666
Q ss_pred HHHHhcCCHhHHHHHHHHHhhCCccC-----CHh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCC--CHHHHHHHH
Q 037911 283 SSYCKKGRLNDAFYLYRIMYRRNVLP-----DLV-TYTTLMNGLCKEGKVREAHQLFHRMVHRG--LSP--DIVSYNTLI 352 (609)
Q Consensus 283 ~~~~~~g~~~~a~~~~~~~~~~~~~p-----~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~g--~~p--~~~~~~~li 352 (609)
..+.+.|++++|.++|+++....... +.. .|...+-++...||...|.+.+++..... +.. .......||
T Consensus 163 ~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~ 242 (282)
T PF14938_consen 163 DLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLL 242 (282)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHH
Confidence 77777788888888887776542211 111 12223334555677777777777776541 111 133445555
Q ss_pred HHHHHcCC---hHHHHHHHHHH
Q 037911 353 FAYCKEGK---MQESKSLLYEM 371 (609)
Q Consensus 353 ~~~~~~g~---~~~A~~~~~~~ 371 (609)
.++- .|+ +++++.-|+.+
T Consensus 243 ~A~~-~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 243 EAYE-EGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHH-TT-CCCHHHHCHHHTTS
T ss_pred HHHH-hCCHHHHHHHHHHHccc
Confidence 5553 333 44444444443
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00034 Score=56.11 Aligned_cols=100 Identities=11% Similarity=0.025 Sum_probs=56.0
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCC--CCH
Q 037911 128 NYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQ--PSI 205 (609)
Q Consensus 128 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~ 205 (609)
++...+..+.+.|++++|.+.|..++...++.+........+.. .+.+.|++++|+..|+.+...... ...
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 76 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGE-------AYYAQGKYADAAKAFLAVVKKYPKSPKAP 76 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHH-------HHHhhccHHHHHHHHHHHHHHCCCCCccc
Confidence 45555666666666666666666666553322222334444444 566666666666666666553211 123
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 037911 206 VSCNFLLNGLLKLNCIDQCWQVYEEMGRI 234 (609)
Q Consensus 206 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 234 (609)
.++..+..++.+.|+.++|...++++.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 77 DALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 44555555666666666666666666554
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.6e-05 Score=47.07 Aligned_cols=33 Identities=27% Similarity=0.493 Sum_probs=27.6
Q ss_pred hcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 037911 556 ESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAP 588 (609)
Q Consensus 556 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 588 (609)
.+|+.++.+|.+.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 468888888888888888888888888888877
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00018 Score=69.72 Aligned_cols=122 Identities=16% Similarity=0.200 Sum_probs=66.5
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHH
Q 037911 237 CPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEE--GFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYT 314 (609)
Q Consensus 237 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 314 (609)
+.+......+++.+....+++.+..++-+.... ....-..|.+++++.|.+.|..+.++.+++.=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 344445555555555555555555555555443 111223344566666666666666666666665666666666666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 037911 315 TLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKE 358 (609)
Q Consensus 315 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 358 (609)
.||+.+.+.|++..|.++..+|..++...+..|+...+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 66666666666666666666665555444545554444444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.91 E-value=2.2e-05 Score=46.47 Aligned_cols=29 Identities=34% Similarity=0.594 Sum_probs=11.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 037911 313 YTTLMNGLCKEGKVREAHQLFHRMVHRGL 341 (609)
Q Consensus 313 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~ 341 (609)
|+.++.+|++.|+++.|.++|++|.+.|+
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~~gv 32 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKEQGV 32 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 34444444444444444444444443333
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00061 Score=65.87 Aligned_cols=117 Identities=19% Similarity=0.180 Sum_probs=53.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCH
Q 037911 247 THVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKV 326 (609)
Q Consensus 247 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 326 (609)
+..+...++++.|.++++++.+.. |+ ....++..+...++-.+|.+++++..+.... +......-...+.+.++.
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCH
Confidence 333444455555555555555442 22 2223444444445555555555555443221 333333333444455555
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHH
Q 037911 327 REAHQLFHRMVHRGLSPD-IVSYNTLIFAYCKEGKMQESKSLLYE 370 (609)
Q Consensus 327 ~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~ 370 (609)
+.|+++.+++.+. .|+ -.+|..|..+|.+.|+++.|+..++.
T Consensus 251 ~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 251 ELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 5555555555443 222 23455555555555555555544443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00032 Score=60.27 Aligned_cols=84 Identities=10% Similarity=-0.039 Sum_probs=49.0
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCC
Q 037911 125 TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPS 204 (609)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 204 (609)
....|..++..+...|++++|...++.++...+..+....++..+.. .|...|++++|+..+++..+.. +..
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~-------~~~~~g~~~eA~~~~~~Al~~~-~~~ 105 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGL-------IHTSNGEHTKALEYYFQALERN-PFL 105 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHHhC-cCc
Confidence 45556666666777777777777777776552221112334555555 6777777777777777776542 333
Q ss_pred HHHHHHHHHHHH
Q 037911 205 IVSCNFLLNGLL 216 (609)
Q Consensus 205 ~~~~~~ll~~~~ 216 (609)
..+++.+...+.
T Consensus 106 ~~~~~~la~i~~ 117 (168)
T CHL00033 106 PQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHHHHH
Confidence 444555554444
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.04 Score=55.43 Aligned_cols=206 Identities=12% Similarity=0.095 Sum_probs=106.9
Q ss_pred CCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCC--------CcHHhHHHHhhccccchhHHHHhCCHHHHHHHHH
Q 037911 123 KPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCP--------HSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFR 194 (609)
Q Consensus 123 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~ 194 (609)
.|-+..|..++..-...-.++.|...|-+.-.- .+.. .+...-..- .-.--|++++|.++|-
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gik~vkrl~~i~s~~~q~ae---------i~~~~g~feeaek~yl 758 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGIKLVKRLRTIHSKEQQRAE---------ISAFYGEFEEAEKLYL 758 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cchhHHHHhhhhhhHHHHhHh---------HhhhhcchhHhhhhhh
Confidence 566778887777666555666665554333211 1110 001111111 1123467777777777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 037911 195 KTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRI-GICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDP 273 (609)
Q Consensus 195 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 273 (609)
+|.+++ ..+..+.+.|++-.+.++++.--.. .-..-...|+.+.+.++....+++|.+.|..-...
T Consensus 759 d~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---- 825 (1189)
T KOG2041|consen 759 DADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---- 825 (1189)
T ss_pred ccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch----
Confidence 665532 2345556666666666655432110 00011345666777777777777777776653211
Q ss_pred CHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037911 274 DLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIF 353 (609)
Q Consensus 274 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 353 (609)
...+.++.+..++++-..+-+.+.+ +....-.+..++...|.-++|.+.|-+.. .|. ..+.
T Consensus 826 -----e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~pk-----aAv~ 886 (1189)
T KOG2041|consen 826 -----ENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRRS----LPK-----AAVH 886 (1189)
T ss_pred -----HhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhcc----CcH-----HHHH
Confidence 1234555555555554444433332 44455566777777777777766554322 111 2345
Q ss_pred HHHHcCChHHHHHHHHH
Q 037911 354 AYCKEGKMQESKSLLYE 370 (609)
Q Consensus 354 ~~~~~g~~~~A~~~~~~ 370 (609)
.|...++|.+|.++-+.
T Consensus 887 tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 887 TCVELNQWGEAVELAQR 903 (1189)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 56666677777666544
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.045 Score=55.07 Aligned_cols=30 Identities=13% Similarity=0.058 Sum_probs=16.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 037911 202 QPSIVSCNFLLNGLLKLNCIDQCWQVYEEM 231 (609)
Q Consensus 202 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 231 (609)
.|.+..|..|.......-.++.|...|-+.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc 718 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRC 718 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhh
Confidence 356666666665555555555555555443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.033 Score=53.26 Aligned_cols=463 Identities=14% Similarity=0.117 Sum_probs=222.2
Q ss_pred HHHHhcCCChhHHHHHHHHhhhcCCCCCCH---H-hHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhc
Q 037911 97 RVLLRCQSDSVSALTFFNWVKNDLEIKPTS---S-NYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISC 172 (609)
Q Consensus 97 ~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~---~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 172 (609)
+-+++.++++++|.++|...-....-.|.. + .-..++++|.. ++.+.....+.++.+. .+..+....|..+
T Consensus 13 gf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~-~~~s~~l~LF~~L--- 87 (549)
T PF07079_consen 13 GFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ-FGKSAYLPLFKAL--- 87 (549)
T ss_pred hHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh-cCCchHHHHHHHH---
Confidence 345677889999999998877543222221 2 23456666664 4566666666666655 2233344445554
Q ss_pred cccchhHHHHhCCHHHHHHHHHHHHhC--CCCC------------CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC---
Q 037911 173 TEDCNWAYVKVGLIRESFKTFRKTLDV--GFQP------------SIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIG--- 235 (609)
Q Consensus 173 ~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~------------~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--- 235 (609)
...+.+.+.+|++.+....+. +..+ +...=+..++.+...|++.+++.+++++...=
T Consensus 88 ------~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkr 161 (549)
T PF07079_consen 88 ------VAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKR 161 (549)
T ss_pred ------HHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhh
Confidence 356899999999998877653 2221 12222456677788888888888888776532
Q ss_pred -CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhH
Q 037911 236 -ICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPD-LVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTY 313 (609)
Q Consensus 236 -~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 313 (609)
..-+..+|+.++-.+.+ ..|-++.+.. .-| ..-|.-++..|.+.=.. ++...=..+.|.....
T Consensus 162 E~~w~~d~yd~~vlmlsr--------SYfLEl~e~~-s~dl~pdyYemilfY~kki~~------~d~~~Y~k~~peeeL~ 226 (549)
T PF07079_consen 162 ECEWNSDMYDRAVLMLSR--------SYFLELKESM-SSDLYPDYYEMILFYLKKIHA------FDQRPYEKFIPEEELF 226 (549)
T ss_pred hhcccHHHHHHHHHHHhH--------HHHHHHHHhc-ccccChHHHHHHHHHHHHHHH------HhhchHHhhCcHHHHH
Confidence 33677888876655543 2333332211 111 11122333333322110 1100001122333333
Q ss_pred HHHHHHHHhc--CCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHHcCChHHHHHHHHHHHHCCCc----cCHHHHHHH
Q 037911 314 TTLMNGLCKE--GKVREAHQLFHRMVHRGLSPDIVS-YNTLIFAYCKEGKMQESKSLLYEMMGNGIY----PDTFTCQII 386 (609)
Q Consensus 314 ~~ll~~~~~~--~~~~~a~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~l 386 (609)
..++....-. .+..--+++++.....-+.|+... ...|+..+.+ +.+++..+-+.+....+. -=..++..+
T Consensus 227 s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~ 304 (549)
T PF07079_consen 227 STIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNL 304 (549)
T ss_pred HHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3333332211 112223334444433334444322 2233333332 333433333332221110 013446666
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHH-----HHHHHHHHHHhcC----ChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 037911 387 VQGYGKEGRLLSALNLVVELQRFGVSISRD-----IYDYLIVALCQDN----RPFAATSLLERIGQDGYVPSLEIYNELM 457 (609)
Q Consensus 387 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-----~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 457 (609)
+....+.++...|-..+.-+...++..... +-..+-+..+..+ +..+=..+++......+ .....-..|+
T Consensus 305 Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di-DrqQLvh~L~ 383 (549)
T PF07079_consen 305 LSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI-DRQQLVHYLV 383 (549)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc-cHHHHHHHHH
Confidence 666667777777766666555443211100 0011111222110 11112223333333221 1222222222
Q ss_pred ---HHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHH----HHHHhcC---CCHhHHHHHHHHHHHCCCCCC----HHH
Q 037911 458 ---ESLCKCDS-VADALLLKDEMVDRNIKPSLSTYRAL----ICCFCGI---GRSGEAVSLMDEMLESGMLPD----SQI 522 (609)
Q Consensus 458 ---~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~l----i~~~~~~---g~~~~A~~~~~~~~~~~~~p~----~~~ 522 (609)
.-+.+.|. -++|+.+++.+.+-.. -|...-+.+ =..|.++ ..+..-+.+-+-+.+.|+.|- ...
T Consensus 384 ~~Ak~lW~~g~~dekalnLLk~il~ft~-yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~ei 462 (549)
T PF07079_consen 384 FGAKHLWEIGQCDEKALNLLKLILQFTN-YDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEI 462 (549)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHH
Confidence 22344444 6777777777765321 222222211 1223221 222333333333344566552 233
Q ss_pred HHHHHHH--HHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 037911 523 CRVLING--YCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYM 596 (609)
Q Consensus 523 ~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 596 (609)
-|-|.++ +...|++.++.-.-.-+.+- .|.+.+|..++-++....++++|..++..+ +|+..+++.=
T Consensus 463 an~LaDAEyLysqgey~kc~~ys~WL~~i--aPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~dsk 531 (549)
T PF07079_consen 463 ANFLADAEYLYSQGEYHKCYLYSSWLTKI--APSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDSK 531 (549)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHh--CCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHHH
Confidence 4444333 45678888877666555544 677788888888888888888888887765 5666665543
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.025 Score=53.29 Aligned_cols=53 Identities=13% Similarity=0.353 Sum_probs=35.6
Q ss_pred HHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHh
Q 037911 136 LAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLD 198 (609)
Q Consensus 136 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 198 (609)
+.+..+|..|+..+..+++. +|.+...|..-.. .+...|++++|..-.+.-++
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~---~pd~a~yy~nRAa-------~~m~~~~~~~a~~dar~~~r 111 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDM---CPDNASYYSNRAA-------TLMMLGRFEEALGDARQSVR 111 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHh---CccchhhhchhHH-------HHHHHHhHhhcccchhhhee
Confidence 44556777788888888866 4555555555444 67778888888777666554
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0013 Score=56.58 Aligned_cols=95 Identities=11% Similarity=0.016 Sum_probs=64.4
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCC
Q 037911 125 TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPS 204 (609)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 204 (609)
....+..++..+...|++++|...|+++++..+..+.....+..+.. .+.+.|++++|+..++++.+.. +.+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~-------~~~~~g~~~~A~~~~~~al~~~-p~~ 105 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGI-------IYASNGEHDKALEYYHQALELN-PKQ 105 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHHhC-ccc
Confidence 45566777777888888888888888887653222222455666666 7888888888888888888753 335
Q ss_pred HHHHHHHHHHHHhcCChHHHHHH
Q 037911 205 IVSCNFLLNGLLKLNCIDQCWQV 227 (609)
Q Consensus 205 ~~~~~~ll~~~~~~~~~~~a~~~ 227 (609)
...+..+...+...|+...+..-
T Consensus 106 ~~~~~~lg~~~~~~g~~~~a~~~ 128 (172)
T PRK02603 106 PSALNNIAVIYHKRGEKAEEAGD 128 (172)
T ss_pred HHHHHHHHHHHHHcCChHhHhhC
Confidence 56666667777777765544433
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0006 Score=54.60 Aligned_cols=104 Identities=13% Similarity=0.081 Sum_probs=80.2
Q ss_pred HHHhcCCChhHHHHHHHHhhhcCCC-CCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccc
Q 037911 98 VLLRCQSDSVSALTFFNWVKNDLEI-KPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDC 176 (609)
Q Consensus 98 ~l~~~~~~~~~A~~~f~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (609)
......++++.|.+.|+.+....+. ......+..++.++.+.|++++|...++.+....++.+.....+..+..
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~----- 84 (119)
T TIGR02795 10 LLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM----- 84 (119)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH-----
Confidence 3445678999999999999864322 2235678889999999999999999999999875444444566666666
Q ss_pred hhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 037911 177 NWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCN 209 (609)
Q Consensus 177 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 209 (609)
.+.+.|+.++|...++++.+.. +.+..+..
T Consensus 85 --~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~ 114 (119)
T TIGR02795 85 --SLQELGDKEKAKATLQQVIKRY-PGSSAAKL 114 (119)
T ss_pred --HHHHhCChHHHHHHHHHHHHHC-cCChhHHH
Confidence 8899999999999999999865 44444433
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00042 Score=67.23 Aligned_cols=125 Identities=17% Similarity=0.142 Sum_probs=105.7
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH
Q 037911 199 VGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRI--GICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLV 276 (609)
Q Consensus 199 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 276 (609)
.+.+.+......+++.+....+++.+..++-+.... ....-..|.+++++.|.+.|..++++.++..=...|+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 344667777888888888888899999998888764 222345677899999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhc
Q 037911 277 TYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKE 323 (609)
Q Consensus 277 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 323 (609)
++|.||+.+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999998877666778877777777665
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00055 Score=52.03 Aligned_cols=91 Identities=14% Similarity=0.090 Sum_probs=49.2
Q ss_pred HHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcC
Q 037911 490 ALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDG 569 (609)
Q Consensus 490 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 569 (609)
.+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++...+.. ..+..++..+...+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHH
Confidence 34444455556666666665555432 2233445555555556666666666666555442 222345555556666666
Q ss_pred CHHHHHHHHHHHH
Q 037911 570 DLSKLMELQKRFL 582 (609)
Q Consensus 570 ~~~~A~~~~~~m~ 582 (609)
++++|...+++..
T Consensus 83 ~~~~a~~~~~~~~ 95 (100)
T cd00189 83 KYEEALEAYEKAL 95 (100)
T ss_pred hHHHHHHHHHHHH
Confidence 6666666666655
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00095 Score=64.83 Aligned_cols=90 Identities=14% Similarity=0.219 Sum_probs=51.3
Q ss_pred HHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 037911 133 VHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLL 212 (609)
Q Consensus 133 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll 212 (609)
+..+...|++++|+..|+++++. .|.+...+..+.. +|.+.|++++|+..++++++.. +.+...|..+.
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~---~P~~~~a~~~~a~-------~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg 77 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL---DPNNAELYADRAQ-------ANIKLGNFTEAVADANKAIELD-PSLAKAYLRKG 77 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 34445556666666666666654 3344455555544 5566666666666666666543 33455555555
Q ss_pred HHHHhcCChHHHHHHHHHHhh
Q 037911 213 NGLLKLNCIDQCWQVYEEMGR 233 (609)
Q Consensus 213 ~~~~~~~~~~~a~~~~~~m~~ 233 (609)
.+|...|++++|+..|++..+
T Consensus 78 ~~~~~lg~~~eA~~~~~~al~ 98 (356)
T PLN03088 78 TACMKLEEYQTAKAALEKGAS 98 (356)
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 666666666666666666555
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0091 Score=54.37 Aligned_cols=70 Identities=13% Similarity=0.052 Sum_probs=52.8
Q ss_pred hcCCChhHHHHHHHHhhhcCCCCC-CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHh
Q 037911 101 RCQSDSVSALTFFNWVKNDLEIKP-TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLI 170 (609)
Q Consensus 101 ~~~~~~~~A~~~f~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 170 (609)
...|+++.|.+.|+.+.......+ ...+...++.++.+.+++++|...++++++..+..|....++-.++
T Consensus 43 ~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g 113 (243)
T PRK10866 43 LQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRG 113 (243)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHH
Confidence 446899999999999987533332 2233467889999999999999999999999777766655554444
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.014 Score=51.83 Aligned_cols=67 Identities=15% Similarity=0.198 Sum_probs=45.4
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhC
Q 037911 126 SSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDV 199 (609)
Q Consensus 126 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 199 (609)
...+...+..+...|++.+|.+.|+.+....+..+........++. ++.+.|++++|...+++.++.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~-------a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAY-------AYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHH-------HHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHHH
Confidence 3445555666777788888888888887776666666666666666 777888888888888777663
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00061 Score=51.77 Aligned_cols=93 Identities=19% Similarity=0.283 Sum_probs=44.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHH
Q 037911 129 YCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSC 208 (609)
Q Consensus 129 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 208 (609)
+..++..+...|++++|...++++.+. .|.+...+..+.. .+...|++++|.+.|+...+.. +.+...+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~ 71 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL---DPDNADAYYNLAA-------AYYKLGKYEEALEDYEKALELD-PDNAKAY 71 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc---CCccHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhCC-CcchhHH
Confidence 344455555555555555555555543 2222233333333 4555555555555555555433 2233344
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHh
Q 037911 209 NFLLNGLLKLNCIDQCWQVYEEMG 232 (609)
Q Consensus 209 ~~ll~~~~~~~~~~~a~~~~~~m~ 232 (609)
..+...+...|+++.|...+....
T Consensus 72 ~~~~~~~~~~~~~~~a~~~~~~~~ 95 (100)
T cd00189 72 YNLGLAYYKLGKYEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 444455555555555555554443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00077 Score=50.91 Aligned_cols=77 Identities=16% Similarity=0.312 Sum_probs=47.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHHCCCccCHHHHHH
Q 037911 315 TLMNGLCKEGKVREAHQLFHRMVHRGL-SPDIVSYNTLIFAYCKEG--------KMQESKSLLYEMMGNGIYPDTFTCQI 385 (609)
Q Consensus 315 ~ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~~~~~~~~~~~~~~~~ 385 (609)
..|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-+.+.+|+.|+..+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344555555777777777777777776 677777777776665432 12344555666666666666666666
Q ss_pred HHHHHH
Q 037911 386 IVQGYG 391 (609)
Q Consensus 386 l~~~~~ 391 (609)
++..+.
T Consensus 110 vl~~Ll 115 (120)
T PF08579_consen 110 VLGSLL 115 (120)
T ss_pred HHHHHH
Confidence 665543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00046 Score=52.05 Aligned_cols=78 Identities=26% Similarity=0.332 Sum_probs=53.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCC-CCChhcHHHHHHHHHhcC--------CHHHHHHHHHHHHHcCCCCChhhHHHH
Q 037911 526 LINGYCMEKDVNKAEALLGFFAKKFQ-IYDTESYNAVFNMFAEDG--------DLSKLMELQKRFLRLGFAPNNLTCKYM 596 (609)
Q Consensus 526 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~~~~~l 596 (609)
.|..|...|++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-+.+.+|+.|+..+++|+..||+++
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34444455666666666666666666 566666666666554422 344567889999999999999999999
Q ss_pred HHHHhcc
Q 037911 597 IHSLWKG 603 (609)
Q Consensus 597 l~~~~~~ 603 (609)
+.++.+.
T Consensus 111 l~~Llkg 117 (120)
T PF08579_consen 111 LGSLLKG 117 (120)
T ss_pred HHHHHHh
Confidence 9988764
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.011 Score=55.52 Aligned_cols=53 Identities=13% Similarity=0.038 Sum_probs=26.8
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHH
Q 037911 248 HVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIM 301 (609)
Q Consensus 248 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 301 (609)
..+.+..++..|+..+...++... -+...|..-...+..-|++++|+--.+.-
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~p-d~a~yy~nRAa~~m~~~~~~~a~~dar~~ 109 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCP-DNASYYSNRAATLMMLGRFEEALGDARQS 109 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCc-cchhhhchhHHHHHHHHhHhhcccchhhh
Confidence 445555556666666665555532 23344444444555555555555444333
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00098 Score=64.76 Aligned_cols=91 Identities=16% Similarity=0.011 Sum_probs=66.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 037911 457 MESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDV 536 (609)
Q Consensus 457 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 536 (609)
...+...|++++|+..|+++++.+. .+...|..+..+|...|++++|+..++++++.. +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 4455667888888888888877543 345667777777778888888888888887643 33566677777788888888
Q ss_pred HHHHHHHHHHHHc
Q 037911 537 NKAEALLGFFAKK 549 (609)
Q Consensus 537 ~~A~~~~~~~~~~ 549 (609)
++|...|+.+.+.
T Consensus 87 ~eA~~~~~~al~l 99 (356)
T PLN03088 87 QTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888877765
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00046 Score=61.91 Aligned_cols=97 Identities=19% Similarity=0.270 Sum_probs=56.3
Q ss_pred HHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037911 134 HILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLN 213 (609)
Q Consensus 134 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 213 (609)
+-+.+.++|++|+..|.++++. .|.+...|..-.. +|.+.|.++.|++-.+..+..+ +....+|..|..
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l---~P~nAVyycNRAA-------Ay~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~ 157 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIEL---DPTNAVYYCNRAA-------AYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGL 157 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc---CCCcchHHHHHHH-------HHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHH
Confidence 3445556666666666666654 3444444544444 6666666666666666666543 334456666666
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHHHH
Q 037911 214 GLLKLNCIDQCWQVYEEMGRIGICPNTHTF 243 (609)
Q Consensus 214 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 243 (609)
+|...|++++|.+.|++..+ +.|+-.+|
T Consensus 158 A~~~~gk~~~A~~aykKaLe--ldP~Ne~~ 185 (304)
T KOG0553|consen 158 AYLALGKYEEAIEAYKKALE--LDPDNESY 185 (304)
T ss_pred HHHccCcHHHHHHHHHhhhc--cCCCcHHH
Confidence 66666666666666666555 44555544
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.66 E-value=7.2e-05 Score=43.03 Aligned_cols=30 Identities=17% Similarity=0.441 Sum_probs=22.7
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037911 557 SYNAVFNMFAEDGDLSKLMELQKRFLRLGF 586 (609)
Q Consensus 557 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 586 (609)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 577777777777777777777777777653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0056 Score=57.55 Aligned_cols=146 Identities=10% Similarity=0.148 Sum_probs=82.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc-CCHhHHHHHHHHHhhC----Cc-cCCHhhHHHHHHHH
Q 037911 247 THVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKK-GRLNDAFYLYRIMYRR----NV-LPDLVTYTTLMNGL 320 (609)
Q Consensus 247 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~----~~-~p~~~~~~~ll~~~ 320 (609)
+..|...|++..|-..+.++- ..|-.. |++++|++.|++..+. +. .--..++..+...+
T Consensus 101 ~~~y~~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY 165 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence 345666666666655555543 445555 7888888888877642 21 11134556677788
Q ss_pred HhcCCHHHHHHHHHHHHHCCCC-----CCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHCC--CccC--HHHHHHHHHHH
Q 037911 321 CKEGKVREAHQLFHRMVHRGLS-----PDIV-SYNTLIFAYCKEGKMQESKSLLYEMMGNG--IYPD--TFTCQIIVQGY 390 (609)
Q Consensus 321 ~~~~~~~~a~~~~~~m~~~g~~-----p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~--~~~~~~l~~~~ 390 (609)
.+.|++++|.++|+++...-.. .+.. .|-..+-++...||...|.+.+++..... +..+ ......|+.++
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~ 245 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY 245 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH
Confidence 8888999999999888765322 1221 22333445556788888888888877542 2111 23445555555
Q ss_pred Hc--cCCHHHHHHHHHHHH
Q 037911 391 GK--EGRLLSALNLVVELQ 407 (609)
Q Consensus 391 ~~--~~~~~~A~~~~~~~~ 407 (609)
-. ...+..++.-|+.+.
T Consensus 246 ~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 246 EEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HTT-CCCHHHHCHHHTTSS
T ss_pred HhCCHHHHHHHHHHHcccC
Confidence 33 234555655555544
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0006 Score=61.16 Aligned_cols=97 Identities=15% Similarity=0.071 Sum_probs=45.0
Q ss_pred cCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-hhcHHHHHHHHHhcCCHHHHH
Q 037911 497 GIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYD-TESYNAVFNMFAEDGDLSKLM 575 (609)
Q Consensus 497 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~ 575 (609)
+.+++++|+..|.++++.. +-|.+.|..-..+|++.|.++.|++-.+..+.. .|. ..+|..|..+|...|++.+|+
T Consensus 93 ~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHHHHH
Confidence 4455555555555555321 223334444444555555555555554444432 121 134444555555555555555
Q ss_pred HHHHHHHHcCCCCChhhHHHHHH
Q 037911 576 ELQKRFLRLGFAPNNLTCKYMIH 598 (609)
Q Consensus 576 ~~~~~m~~~g~~p~~~~~~~ll~ 598 (609)
+.|++.+ .+.|+..+|..=|.
T Consensus 170 ~aykKaL--eldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 170 EAYKKAL--ELDPDNESYKSNLK 190 (304)
T ss_pred HHHHhhh--ccCCCcHHHHHHHH
Confidence 5555554 33455544444443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.64 E-value=7.8e-05 Score=42.88 Aligned_cols=26 Identities=38% Similarity=0.810 Sum_probs=10.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037911 313 YTTLMNGLCKEGKVREAHQLFHRMVH 338 (609)
Q Consensus 313 ~~~ll~~~~~~~~~~~a~~~~~~m~~ 338 (609)
|+.++++|++.|++++|.++|++|.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 33333333333333333333333333
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00011 Score=54.53 Aligned_cols=83 Identities=19% Similarity=0.291 Sum_probs=61.6
Q ss_pred CCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHH
Q 037911 103 QSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVK 182 (609)
Q Consensus 103 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 182 (609)
+++++.|+.+|+.+.......++...+..++.++.+.|++++|..+++. .+. .+.+......+.. ++.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~---~~~~~~~~~l~a~-------~~~~ 70 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL---DPSNPDIHYLLAR-------CLLK 70 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH---HHCHHHHHHHHHH-------HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC---CCCCHHHHHHHHH-------HHHH
Confidence 5789999999999997533223566677789999999999999999988 322 2233444445566 8999
Q ss_pred hCCHHHHHHHHHHH
Q 037911 183 VGLIRESFKTFRKT 196 (609)
Q Consensus 183 ~g~~~~A~~~~~~~ 196 (609)
.|++++|+++|++.
T Consensus 71 l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 71 LGKYEEAIKALEKA 84 (84)
T ss_dssp TT-HHHHHHHHHHH
T ss_pred hCCHHHHHHHHhcC
Confidence 99999999999863
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0016 Score=60.94 Aligned_cols=129 Identities=14% Similarity=0.171 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037911 452 IYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICC-FCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGY 530 (609)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 530 (609)
+|..++....+.+..+.|..+|.+..+.+. .+...|...... +...++.+.|.++|+...+. +..+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 455566666666666666666666664321 122333322222 22245555566666666653 344556666666666
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCCh----hcHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037911 531 CMEKDVNKAEALLGFFAKKFQIYDT----ESYNAVFNMFAEDGDLSKLMELQKRFLRL 584 (609)
Q Consensus 531 ~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 584 (609)
.+.|+.+.|+.+|+..... .+.. ..|..++.-=.+.|+.+.+.++.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6666666666666666644 2222 35666666666666666666666666643
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0017 Score=53.03 Aligned_cols=96 Identities=10% Similarity=-0.009 Sum_probs=50.4
Q ss_pred HhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHH
Q 037911 127 SNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIV 206 (609)
Q Consensus 127 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 206 (609)
.....+...+...|++++|.++|+-+... .|.+...|-.|.. .+...|++++|+..|..+...+ +.++.
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~---Dp~~~~y~~gLG~-------~~Q~~g~~~~AI~aY~~A~~L~-~ddp~ 104 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIY---DAWSFDYWFRLGE-------CCQAQKHWGEAIYAYGRAAQIK-IDAPQ 104 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcccHHHHHHHHH-------HHHHHhhHHHHHHHHHHHHhcC-CCCch
Confidence 34444445555555555555555555543 3344444555544 4555555555555555555544 34445
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhh
Q 037911 207 SCNFLLNGLLKLNCIDQCWQVYEEMGR 233 (609)
Q Consensus 207 ~~~~ll~~~~~~~~~~~a~~~~~~m~~ 233 (609)
.+-.+..++...|+.+.|.+.|+..+.
T Consensus 105 ~~~~ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 105 APWAAAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555555555555443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0038 Score=53.77 Aligned_cols=91 Identities=13% Similarity=0.056 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037911 450 LEIYNELMESLCKCDSVADALLLKDEMVDRNIKPS--LSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLI 527 (609)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 527 (609)
...+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|...++++.+.. +-+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 44566677777777888888888887775432222 3566777777788888888888888877642 22455566666
Q ss_pred HHHHccCCHHHHHH
Q 037911 528 NGYCMEKDVNKAEA 541 (609)
Q Consensus 528 ~~~~~~g~~~~A~~ 541 (609)
..+...|+...+..
T Consensus 114 ~~~~~~g~~~~a~~ 127 (172)
T PRK02603 114 VIYHKRGEKAEEAG 127 (172)
T ss_pred HHHHHcCChHhHhh
Confidence 77777666544443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00024 Score=52.61 Aligned_cols=82 Identities=22% Similarity=0.316 Sum_probs=34.8
Q ss_pred CCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 037911 139 NNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKL 218 (609)
Q Consensus 139 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 218 (609)
+|+++.|+.+++++++..+..+ +...+..+.. +|.+.|++++|+.++++ .+.+ +.+....-.+..++.+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~-~~~~~~~la~-------~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l 71 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNP-NSAYLYNLAQ-------CYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKL 71 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTH-HHHHHHHHHH-------HHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHHCCCCh-hHHHHHHHHH-------HHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHh
Confidence 3455555555555555422111 2223333344 45555555555555554 2111 11122222334445555
Q ss_pred CChHHHHHHHHH
Q 037911 219 NCIDQCWQVYEE 230 (609)
Q Consensus 219 ~~~~~a~~~~~~ 230 (609)
|++++|+++|++
T Consensus 72 ~~y~eAi~~l~~ 83 (84)
T PF12895_consen 72 GKYEEAIKALEK 83 (84)
T ss_dssp T-HHHHHHHHHH
T ss_pred CCHHHHHHHHhc
Confidence 555555555543
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.003 Score=51.72 Aligned_cols=91 Identities=16% Similarity=0.046 Sum_probs=44.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 037911 456 LMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKD 535 (609)
Q Consensus 456 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 535 (609)
+...+...|++++|.++|+.+...+. -+..-|-.|..++-..|++++|+..|..+.... +-|+..+-.+..++...|+
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYDA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCC
Confidence 33334445555555555555544332 223334444455555555555555555555443 2344445555555555555
Q ss_pred HHHHHHHHHHHHH
Q 037911 536 VNKAEALLGFFAK 548 (609)
Q Consensus 536 ~~~A~~~~~~~~~ 548 (609)
.+.|.+.|+..+.
T Consensus 119 ~~~A~~aF~~Ai~ 131 (157)
T PRK15363 119 VCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555554443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.045 Score=51.87 Aligned_cols=109 Identities=12% Similarity=0.085 Sum_probs=84.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 037911 452 IYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYC 531 (609)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 531 (609)
+.+..+.-+...|+...|.++-.+.. + |+-.-|...+.+++..+++++-.++-.. +-++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk---v-~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK---V-PDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC---C-cHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 45556777788899999888866653 3 8889999999999999999987776432 124477888999999
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHH
Q 037911 532 MEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKR 580 (609)
Q Consensus 532 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 580 (609)
+.|+..+|..++.++ .+..-+..|.+.|++.+|.+.--+
T Consensus 249 ~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999888662 246677888999999998765433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.003 Score=54.17 Aligned_cols=72 Identities=7% Similarity=-0.034 Sum_probs=48.1
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQP--SIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFC 251 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 251 (609)
.+...|++++|+..|++.......+ ...+|..+...+...|++++|+..+++..... +....++..+...+.
T Consensus 44 ~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i~~ 117 (168)
T CHL00033 44 SAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVICH 117 (168)
T ss_pred HHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHH
Confidence 6777888888888888887653222 23467777778888888888888888776642 233444555555555
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0081 Score=61.12 Aligned_cols=141 Identities=11% Similarity=0.025 Sum_probs=80.6
Q ss_pred CCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcC--------CCHhHHHHHHHHHH
Q 037911 447 VPSLEIYNELMESLCKC-----DSVADALLLKDEMVDRNIKPSL-STYRALICCFCGI--------GRSGEAVSLMDEML 512 (609)
Q Consensus 447 ~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~-~~~~~li~~~~~~--------g~~~~A~~~~~~~~ 512 (609)
+.+...|...+++.... +..+.|..+|++.++.. |+. ..|..+..++... ++...+.+..++..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 45556666665553321 22556777777776644 443 2333333222211 11233334444433
Q ss_pred HC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 037911 513 ES-GMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNL 591 (609)
Q Consensus 513 ~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 591 (609)
.. ....+...|..+.-.....|++++|...++++... .|+...|..+...+...|+.++|.+.+++.... .|...
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCc
Confidence 32 12334566666666666677888888888877776 456667777777788888888888888777633 55555
Q ss_pred hH
Q 037911 592 TC 593 (609)
Q Consensus 592 ~~ 593 (609)
||
T Consensus 488 t~ 489 (517)
T PRK10153 488 TL 489 (517)
T ss_pred hH
Confidence 54
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.043 Score=48.46 Aligned_cols=132 Identities=14% Similarity=0.121 Sum_probs=79.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHH-----HH
Q 037911 207 SCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYN-----TL 281 (609)
Q Consensus 207 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----~l 281 (609)
..+.+++.+.-.|.+.-...++.+.++..-+.+......|++.-.+.|+.+.|...|+...+..-..+..+.+ ..
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4566666777777777777777777776555566666677777777777777777777665542222322222 22
Q ss_pred HHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037911 282 ISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHR 339 (609)
Q Consensus 282 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 339 (609)
...|.-++++..|...+.+....+.. |...-|.-.-+..-.|+..+|.+.++.|++.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33445556666666666666655433 3444443333334456666777777777665
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0019 Score=55.49 Aligned_cols=86 Identities=27% Similarity=0.382 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc----------------CCHhHHHHH
Q 037911 239 NTHTFNILTHVFCKN-----GDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKK----------------GRLNDAFYL 297 (609)
Q Consensus 239 ~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------------g~~~~a~~~ 297 (609)
|..+|..+++.|.+. |.++-....+..|.+.|+..|..+|+.|++.+=+. .+-+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 344444444444432 44455555555555555555555555555554331 123344555
Q ss_pred HHHHhhCCccCCHhhHHHHHHHHHhcC
Q 037911 298 YRIMYRRNVLPDLVTYTTLMNGLCKEG 324 (609)
Q Consensus 298 ~~~~~~~~~~p~~~~~~~ll~~~~~~~ 324 (609)
+++|...|+-||..++..+++.+++.+
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 555555555555555555555554443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0051 Score=48.49 Aligned_cols=103 Identities=17% Similarity=0.084 Sum_probs=60.9
Q ss_pred HHHHhcCCCHhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC----hhcHHHHHHHH
Q 037911 492 ICCFCGIGRSGEAVSLMDEMLESGMLPD--SQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYD----TESYNAVFNMF 565 (609)
Q Consensus 492 i~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~ 565 (609)
..++-..|+.++|+.+|++....|+... ...+..+...+...|++++|..+++...... |+ ......+..++
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHH
Confidence 3445566777777777777777665433 2345566677777777777777777766542 33 12223334456
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 037911 566 AEDGDLSKLMELQKRFLRLGFAPNNLTCKYMIHSL 600 (609)
Q Consensus 566 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 600 (609)
...|+.++|++.+-..+. ++...|.--|..|
T Consensus 86 ~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~y 116 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALA----ETLPRYRRAIRFY 116 (120)
T ss_pred HHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 677777777777666552 3333555555444
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0029 Score=54.33 Aligned_cols=104 Identities=22% Similarity=0.355 Sum_probs=51.9
Q ss_pred CCHHhHHHHHHHHHh-----cCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 037911 273 PDLVTYNTLISSYCK-----KGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVS 347 (609)
Q Consensus 273 ~~~~~~~~li~~~~~-----~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 347 (609)
.+..+|..++..|.+ .|..+-....++.|.+-|+.-|..+|+.|++.+=+ |.+- -..+|+.+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~----------- 111 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE----------- 111 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH-----------
Confidence 355555555555553 34555556666666666666666666666665543 1110 00000000
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCC
Q 037911 348 YNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGR 395 (609)
Q Consensus 348 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 395 (609)
..- .-.+-+-|++++++|...|+.||..++..+++.+.+.+.
T Consensus 112 ----F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 ----FMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ----hcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 000 011234456666666666666666666666666655443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0031 Score=58.97 Aligned_cols=132 Identities=16% Similarity=0.125 Sum_probs=86.2
Q ss_pred HhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHH
Q 037911 127 SNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIV 206 (609)
Q Consensus 127 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 206 (609)
.+|..+++..-+.+..+.|+.+|.++.+. ......+|...... -|.-.++.+.|.++|+...+. ++.+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~---~~~~~~vy~~~A~~------E~~~~~d~~~A~~Ife~glk~-f~~~~~ 71 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD---KRCTYHVYVAYALM------EYYCNKDPKRARKIFERGLKK-FPSDPD 71 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCS-THHHHHHHHH------HHHTCS-HHHHHHHHHHHHHH-HTT-HH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC---CCCCHHHHHHHHHH------HHHhCCCHHHHHHHHHHHHHH-CCCCHH
Confidence 35677777777777788888888888733 22234444433320 133355666688888888764 466777
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 037911 207 SCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNT---HTFNILTHVFCKNGDVDKVNGFLEKIEEE 269 (609)
Q Consensus 207 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 269 (609)
.|...++.+...|+.+.|..+|++.... +.++. ..|...+..=.+.|+++.+.++.+++.+.
T Consensus 72 ~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 72 FWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7888888888888888888888888764 22222 36777777777778887777777777664
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.053 Score=45.27 Aligned_cols=124 Identities=13% Similarity=0.114 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCC---CCCCHHHHH
Q 037911 448 PSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESG---MLPDSQICR 524 (609)
Q Consensus 448 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~ 524 (609)
|+..--..|..+..+.|+..+|...|++...--..-|....-.+.++....+++.+|...++++.+.. -.|| +.-
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chH
Confidence 44444444555555555555555555555543334445555555555555555555555555554431 1222 223
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHH
Q 037911 525 VLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLM 575 (609)
Q Consensus 525 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 575 (609)
.+...+...|+.+.|+..|+..... .|+...-......+.++|+.++|.
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHH
Confidence 4445555555555555555555544 344433333334445555555443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.017 Score=48.12 Aligned_cols=148 Identities=14% Similarity=0.120 Sum_probs=88.9
Q ss_pred ChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhC
Q 037911 105 DSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVG 184 (609)
Q Consensus 105 ~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g 184 (609)
||+..++ .+.+....-|+...-..+...+.+.|++.+|...|++... +....+......+.. +....+
T Consensus 71 dP~R~~R---ea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~-------Aqfa~~ 138 (251)
T COG4700 71 DPERHLR---EATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQ-------AQFAIQ 138 (251)
T ss_pred ChhHHHH---HHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHH-------HHHhhc
Confidence 5554433 2333333466777777777788888888888887777764 234456666666666 677777
Q ss_pred CHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 037911 185 LIRESFKTFRKTLDVGF-QPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFL 263 (609)
Q Consensus 185 ~~~~A~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 263 (609)
++.+|..+++++.+... ..++...-.+.+.+...|...+|...|+..... -|+...-..-...+.+.|+.+++..-+
T Consensus 139 ~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 139 EFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred cHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 77777777777776431 012223444556666777777777777776653 355444444444556666655555444
Q ss_pred HHH
Q 037911 264 EKI 266 (609)
Q Consensus 264 ~~~ 266 (609)
..+
T Consensus 217 ~~v 219 (251)
T COG4700 217 VAV 219 (251)
T ss_pred HHH
Confidence 333
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00058 Score=48.17 Aligned_cols=64 Identities=19% Similarity=0.250 Sum_probs=38.3
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 037911 531 CMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMI 597 (609)
Q Consensus 531 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 597 (609)
.+.|++++|.++|+.+.... +-+...+..++.+|.+.|++++|.++++++... .|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 34566677777776666552 224455666666777777777777777766644 55555555444
|
... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0096 Score=54.02 Aligned_cols=112 Identities=17% Similarity=0.136 Sum_probs=68.8
Q ss_pred CCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHHcCCCCChhcHH
Q 037911 483 PSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEK---DVNKAEALLGFFAKKFQIYDTESYN 559 (609)
Q Consensus 483 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~ 559 (609)
-|...|-.|...|...|+.+.|..-|.+..+.. .++...+..+..++..+. ...++..+|+++.+.. .-|+.+..
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~ 231 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS 231 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence 456667777777777777777777777776542 345555555555554432 3556677777777552 33445566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 037911 560 AVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMIH 598 (609)
Q Consensus 560 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 598 (609)
.|...+...|++.+|...|+.|++. .|....+..+|.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie 268 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHH
Confidence 6666677777777777777777743 455555555553
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.01 Score=46.87 Aligned_cols=17 Identities=12% Similarity=0.260 Sum_probs=6.3
Q ss_pred HHHhCCHHHHHHHHHHH
Q 037911 180 YVKVGLIRESFKTFRKT 196 (609)
Q Consensus 180 ~~~~g~~~~A~~~~~~~ 196 (609)
|...|++++|+.+|++.
T Consensus 48 lr~LG~~deA~~~L~~~ 64 (120)
T PF12688_consen 48 LRNLGRYDEALALLEEA 64 (120)
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 33333333333333333
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.012 Score=59.97 Aligned_cols=137 Identities=11% Similarity=0.047 Sum_probs=72.0
Q ss_pred CCCCCHHhHHHHHHHHHhCC-----ChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHh--------CCHH
Q 037911 121 EIKPTSSNYCLIVHILAWNN-----KFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKV--------GLIR 187 (609)
Q Consensus 121 ~~~~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--------g~~~ 187 (609)
..+.+..+|...+++..... .+..|..+|+++++. .|.....+..+.. +|... ++..
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~-------~~~~~~~~~~~~~~~l~ 401 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKAL-------ADIVRHSQQPLDEKQLA 401 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHH-------HHHHHHhcCCccHHHHH
Confidence 34567788888877765432 377999999999987 4555666655443 22111 1122
Q ss_pred HHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 037911 188 ESFKTFRKTLDV-GFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKI 266 (609)
Q Consensus 188 ~A~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 266 (609)
.+.+..++.... ..+.+...|..+.-.....|++++|...+++....+ |+...|..+...+...|+.++|.+.+++.
T Consensus 402 ~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 402 ALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred HHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333333332221 112233444444444444455555555555555532 44555555555555555555555555555
Q ss_pred HHc
Q 037911 267 EEE 269 (609)
Q Consensus 267 ~~~ 269 (609)
...
T Consensus 480 ~~L 482 (517)
T PRK10153 480 FNL 482 (517)
T ss_pred Hhc
Confidence 443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0033 Score=58.82 Aligned_cols=130 Identities=18% Similarity=0.153 Sum_probs=63.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHC----C-CCCCHHH
Q 037911 453 YNELMESLCKCDSVADALLLKDEMV----DRNIK-PSLSTYRALICCFCGIGRSGEAVSLMDEMLES----G-MLPDSQI 522 (609)
Q Consensus 453 ~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~-~~p~~~~ 522 (609)
|..|...|.-.|+++.|+...+.-+ +.|-+ ....++..+..++.-.|+++.|.+.|+..... | -......
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 4444444444566666654433221 11110 11234555666666666666666666554321 1 1122334
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHc----CC-CCChhcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037911 523 CRVLINGYCMEKDVNKAEALLGFFAKK----FQ-IYDTESYNAVFNMFAEDGDLSKLMELQKRFL 582 (609)
Q Consensus 523 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 582 (609)
.-.|...|.-..++++|+.++.+-... +- .-....+.+|..+|...|..++|+.+.+.-+
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 445555565556666666665432211 00 1123456666666666666666666555443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.019 Score=50.87 Aligned_cols=70 Identities=11% Similarity=0.098 Sum_probs=51.9
Q ss_pred HhcCCChhHHHHHHHHhhhcCCCC-CCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHH
Q 037911 100 LRCQSDSVSALTFFNWVKNDLEIK-PTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDL 169 (609)
Q Consensus 100 ~~~~~~~~~A~~~f~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 169 (609)
.-..|++..|.+.|+.+..+.... ....+...++.++.+.|++++|...++.+++..+..+....++-.+
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~ 85 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYML 85 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHH
Confidence 345689999999999999764443 3677888999999999999999999999999877766555444433
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0015 Score=46.22 Aligned_cols=65 Identities=22% Similarity=0.392 Sum_probs=57.9
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhC-CHHHHHHHHHHHHhC
Q 037911 125 TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVG-LIRESFKTFRKTLDV 199 (609)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g-~~~~A~~~~~~~~~~ 199 (609)
++..|..++..+...|++++|+..|+++++. .|.+..++..+.. +|...| ++++|++.+++.++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~---~p~~~~~~~~~g~-------~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL---DPNNAEAYYNLGL-------AYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH---STTHHHHHHHHHH-------HHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHH-------HHHHhCccHHHHHHHHHHHHHc
Confidence 5678999999999999999999999999987 5678888888888 899999 799999999998874
|
... |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.17 Score=52.34 Aligned_cols=185 Identities=17% Similarity=0.195 Sum_probs=116.4
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCC
Q 037911 125 TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPS 204 (609)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 204 (609)
..-....-+..+.+...|+-|..+-..- ..+.+....+.+.+ +..+.+.|++++|...|-+-+.. +.|+
T Consensus 333 ~ek~le~kL~iL~kK~ly~~Ai~LAk~~-------~~d~d~~~~i~~kY---gd~Ly~Kgdf~~A~~qYI~tI~~-le~s 401 (933)
T KOG2114|consen 333 IEKDLETKLDILFKKNLYKVAINLAKSQ-------HLDEDTLAEIHRKY---GDYLYGKGDFDEATDQYIETIGF-LEPS 401 (933)
T ss_pred eeccHHHHHHHHHHhhhHHHHHHHHHhc-------CCCHHHHHHHHHHH---HHHHHhcCCHHHHHHHHHHHccc-CChH
Confidence 3444556788888888888888764332 12333333333310 01466899999999988777642 1232
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 037911 205 IVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISS 284 (609)
Q Consensus 205 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 284 (609)
.++.-|....++..-..+++.+.+.|+. +...-..|+.+|.+.++.++..++.+... .|.. ..-....+..
T Consensus 402 -----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~I 472 (933)
T KOG2114|consen 402 -----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEI 472 (933)
T ss_pred -----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHH
Confidence 3455666777777888888888888864 45555778999999999998888877655 3321 1113445566
Q ss_pred HHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037911 285 YCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMV 337 (609)
Q Consensus 285 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 337 (609)
+.+.+-.++|..+-.+... +......+ +-..+++++|.+++..+.
T Consensus 473 lr~snyl~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 473 LRKSNYLDEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHhChHHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence 6666667777665544432 22222333 345678888888887653
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0011 Score=46.25 Aligned_cols=58 Identities=17% Similarity=0.181 Sum_probs=37.5
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037911 526 LINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRL 584 (609)
Q Consensus 526 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 584 (609)
+...+.+.|++++|.+.|+.+++.. +-+...+..+..++...|++++|..+|+++++.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455666777777777777777553 224456666777777777777777777777644
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0078 Score=55.26 Aligned_cols=100 Identities=9% Similarity=-0.041 Sum_probs=66.6
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCC--CCCCH
Q 037911 128 NYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVG--FQPSI 205 (609)
Q Consensus 128 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~ 205 (609)
.|...+..+.+.|++++|...|+.+++.++..+.....+..+.. .|...|++++|+..|+.+.+.- .+...
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~-------~y~~~g~~~~A~~~f~~vv~~yP~s~~~~ 217 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQ-------LNYNKGKKDDAAYYFASVVKNYPKSPKAA 217 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHHHCCCCcchh
Confidence 34444444466788888888888888775544444556666666 7888888888888888887632 12234
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 037911 206 VSCNFLLNGLLKLNCIDQCWQVYEEMGRI 234 (609)
Q Consensus 206 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 234 (609)
.++-.+...+...|+.++|..+|+++.+.
T Consensus 218 dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 218 DAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44555556666777777777777777664
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0015 Score=46.01 Aligned_cols=52 Identities=17% Similarity=0.239 Sum_probs=29.5
Q ss_pred hCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhC
Q 037911 138 WNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDV 199 (609)
Q Consensus 138 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 199 (609)
..|++++|++.|+.+... .|.+..+...+.. +|.+.|++++|..+++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~-------~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR---NPDNPEARLLLAQ-------CYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH---TTTSHHHHHHHHH-------HHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHH---CCCCHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHHH
Confidence 455666666666666554 3445555555555 566666666666666666553
|
... |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.005 Score=57.61 Aligned_cols=110 Identities=18% Similarity=0.149 Sum_probs=60.8
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHH--hhC--CC-CCCHHHHHHHHHH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSI----VSCNFLLNGLLKLNCIDQCWQVYEEM--GRI--GI-CPNTHTFNILTHV 249 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m--~~~--~~-~~~~~~~~~l~~~ 249 (609)
-+++.|+.+..+.+|+.+++.| ..|. ..|..|.++|.-.+++++|+++...= ..+ |- .-...+...|.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 6889999999999999999877 2332 24556666677777788887764321 110 10 1122333445555
Q ss_pred HHHcCChHHHHHHHHH----HHHcCCC-CCHHhHHHHHHHHHhcC
Q 037911 250 FCKNGDVDKVNGFLEK----IEEEGFD-PDLVTYNTLISSYCKKG 289 (609)
Q Consensus 250 ~~~~g~~~~a~~~~~~----~~~~~~~-~~~~~~~~li~~~~~~g 289 (609)
+--.|.+++|.....+ ..+.|-+ .....+..+...|...|
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakG 149 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKG 149 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcc
Confidence 5566677776654332 2222211 12334455555665544
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0056 Score=56.17 Aligned_cols=91 Identities=10% Similarity=0.032 Sum_probs=76.6
Q ss_pred cCCChhHHHHHHHHhhhcCCCC-CCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHH
Q 037911 102 CQSDSVSALTFFNWVKNDLEIK-PTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAY 180 (609)
Q Consensus 102 ~~~~~~~A~~~f~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 180 (609)
..++++.|...|+...+..... ..+.++..++.+|...|++++|...|+.+++..++.+...+.+..++. .|
T Consensus 155 ~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~-------~~ 227 (263)
T PRK10803 155 DKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV-------IM 227 (263)
T ss_pred hcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH-------HH
Confidence 3589999999999998753222 235789999999999999999999999999887777777777777777 78
Q ss_pred HHhCCHHHHHHHHHHHHhC
Q 037911 181 VKVGLIRESFKTFRKTLDV 199 (609)
Q Consensus 181 ~~~g~~~~A~~~~~~~~~~ 199 (609)
...|+.++|..+|+++++.
T Consensus 228 ~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 228 QDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 8999999999999999875
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.002 Score=44.81 Aligned_cols=57 Identities=12% Similarity=0.207 Sum_probs=33.9
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHh
Q 037911 132 IVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLD 198 (609)
Q Consensus 132 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 198 (609)
++..+...|++++|.+.|+++++. .|.+...+..+.. .+...|++++|+..|+++++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~---~P~~~~a~~~lg~-------~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQ---DPDNPEAWYLLGR-------ILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCC---STTHHHHHHHHHH-------HHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHH
Confidence 345556666666666666666643 3455566666655 56666666666666666654
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.29 Score=46.48 Aligned_cols=109 Identities=15% Similarity=0.104 Sum_probs=78.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 037911 417 IYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFC 496 (609)
Q Consensus 417 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 496 (609)
+.+..+.-+...|+...|.++-.+.. .|+-..|...+.+++..++|++-.++... + -.+.-|...+.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHH
Confidence 44445666667777666666655542 47888888899999999999887776432 1 23477888888888
Q ss_pred cCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 037911 497 GIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGF 545 (609)
Q Consensus 497 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 545 (609)
+.|+..+|..+...+ + + ..-+..|.+.|++.+|.+..-+
T Consensus 249 ~~~~~~eA~~yI~k~-----~-~----~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-D----EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-h----HHHHHHHHHCCCHHHHHHHHHH
Confidence 899999988888773 1 1 3456778888998888776543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.17 Score=48.47 Aligned_cols=120 Identities=13% Similarity=0.088 Sum_probs=59.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc---------CCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 037911 463 CDSVADALLLKDEMVDRNIKPSLSTYRALICCFCG---------IGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCME 533 (609)
Q Consensus 463 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 533 (609)
.|+.++|+.++..+......+++.+|..+...|.. ....++|+..|.+.-+. .|+...-..++..+...
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~ 272 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLA 272 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHc
Confidence 45555555555554433333555555555544321 12356677777766643 34444332333333333
Q ss_pred CC----HHHHHHHH----HHHHHcCC---CCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037911 534 KD----VNKAEALL----GFFAKKFQ---IYDTESYNAVFNMFAEDGDLSKLMELQKRFLRL 584 (609)
Q Consensus 534 g~----~~~A~~~~----~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 584 (609)
|. -.+..++- ..+.++|. ..+-.-+..++.+..-.|+.++|.+..++|.+.
T Consensus 273 g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 273 GHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred CCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 32 11222222 12223333 223334566677777788888888888888755
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0028 Score=44.76 Aligned_cols=63 Identities=16% Similarity=0.095 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 037911 520 SQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDG-DLSKLMELQKRFLR 583 (609)
Q Consensus 520 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~ 583 (609)
..+|..+...+...|++++|+..|++.++.. +.++..|..+..+|...| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4456666666666666666666666666552 223455666666666666 56666666666654
|
... |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.22 Score=44.42 Aligned_cols=84 Identities=18% Similarity=0.080 Sum_probs=54.5
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCH
Q 037911 126 SSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSI 205 (609)
Q Consensus 126 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 205 (609)
+..+..-+....+.|++++|.+.|+.+..+.+..|-...+...++- ++.+.+++++|+..+++.+..-.....
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~y-------A~Yk~~~y~~A~~~~drFi~lyP~~~n 106 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAY-------AYYKNGEYDLALAYIDRFIRLYPTHPN 106 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHH-------HHHhcccHHHHHHHHHHHHHhCCCCCC
Confidence 3344444555567788888888888888776655666666666666 777888888888888877764322223
Q ss_pred HHHHHHHHHHH
Q 037911 206 VSCNFLLNGLL 216 (609)
Q Consensus 206 ~~~~~ll~~~~ 216 (609)
..|-.-|.+++
T Consensus 107 ~dY~~YlkgLs 117 (254)
T COG4105 107 ADYAYYLKGLS 117 (254)
T ss_pred hhHHHHHHHHH
Confidence 34555555554
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.22 Score=44.16 Aligned_cols=143 Identities=8% Similarity=-0.057 Sum_probs=91.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH----
Q 037911 417 IYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALI---- 492 (609)
Q Consensus 417 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li---- 492 (609)
..+.++..+.-.|.+.-...++++.++...+.++.....|++.-.+.|+.+.|...|++..+..-+.|..+.+.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4555666666667777777777777776666677777778887788888888888888776543334444444333
Q ss_pred -HHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHH
Q 037911 493 -CCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVF 562 (609)
Q Consensus 493 -~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 562 (609)
..|.-.+++.+|...+.++.... ..|....|.-.-+..-.|+..+|.+.++.+... .|...+-++++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~ 326 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVL 326 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHH
Confidence 23445667777777777776543 334444454444455567778888888777765 55555444443
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.043 Score=49.90 Aligned_cols=101 Identities=11% Similarity=0.119 Sum_probs=58.9
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc---CChHHHHHHHHHHHHcCCCCCHHhH
Q 037911 202 QPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKN---GDVDKVNGFLEKIEEEGFDPDLVTY 278 (609)
Q Consensus 202 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~ 278 (609)
+-|...|-.|..+|...|+++.|...|.+..+.. .++...+..+..++... ....++..+|+++.... +-|+.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 4566666666666666666666666666665531 34455555555544333 12456666666666553 2244555
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHhhC
Q 037911 279 NTLISSYCKKGRLNDAFYLYRIMYRR 304 (609)
Q Consensus 279 ~~li~~~~~~g~~~~a~~~~~~~~~~ 304 (609)
..|...+...|++.+|...|+.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 55556666677777777777766664
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.83 Score=49.64 Aligned_cols=327 Identities=16% Similarity=0.126 Sum_probs=156.1
Q ss_pred HHHHhCCHHHHHHHHHHHHh-CC--CCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHhhCCCCCCHHH--HHHHHHHHHH
Q 037911 179 AYVKVGLIRESFKTFRKTLD-VG--FQPSIVSCNFLLNGLLK-LNCIDQCWQVYEEMGRIGICPNTHT--FNILTHVFCK 252 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~-~~--~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~m~~~~~~~~~~~--~~~l~~~~~~ 252 (609)
-+...+++.+|+++.++-+- .+ +.-+...+-.-+.++.+ .++.+-...++-.+...++.-+.+. +.+-...|..
T Consensus 686 ~~l~~~~y~~AF~~~RkhRidlnii~d~~~~~Fl~nv~afl~~in~~~~l~lfl~~lk~eDvtk~~y~~~~~s~k~~~~~ 765 (1265)
T KOG1920|consen 686 TLLDRLRYKEAFEVMRKHRIDLNIIFDYDPKRFLKNVPAFLKQINRVNHLELFLTELKEEDVTKTMYSSTSGSGKQVYMS 765 (1265)
T ss_pred HHHHHHHHHHHHHHHHHhccCccchhhcCHHHHHhhHHHHhccCCcHHHHHHHHhhcccchhhhhhccccccccceeEEe
Confidence 67788888888777665431 11 11122333333334443 3444545555555543222111110 0000011111
Q ss_pred c----CChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC--CHhHHHHHHHHHhhCCccCCHhh----------HHHH
Q 037911 253 N----GDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKG--RLNDAFYLYRIMYRRNVLPDLVT----------YTTL 316 (609)
Q Consensus 253 ~----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~p~~~~----------~~~l 316 (609)
. ..++..-+.+....... .|+ .....+|.+|.+.+ .+++|+....+.......++... -+.+
T Consensus 766 r~~~d~kv~~vc~~vr~~l~~~-~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~~~~~~~ad~al~hll~Lvdvn~l 843 (1265)
T KOG1920|consen 766 RDPYDNKVNSVCDAVRNALERR-APD-KFNLFILTSYVKSNPPEIEEALQKIKELQLAQVAVSADEALKHLLFLVDVNEL 843 (1265)
T ss_pred ccchhhHHHHHHHHHHHHHhhc-Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhccHHHH
Confidence 1 12333333333333332 344 45556778888887 68888887777764211111100 0112
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------------HcCChHHHHHHHHHHHHCCCccCHHHH
Q 037911 317 MNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYC-------------KEGKMQESKSLLYEMMGNGIYPDTFTC 383 (609)
Q Consensus 317 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~-------------~~g~~~~A~~~~~~~~~~~~~~~~~~~ 383 (609)
.+.....-|++-|..+-+.- ..|+.-|-.++.-+- ..++++.|+..+.++- ...|
T Consensus 844 fn~ALgtYDl~Lal~VAq~S-----qkDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~-------~~~~ 911 (1265)
T KOG1920|consen 844 FNSALGTYDLDLALLVAQKS-----QKDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECG-------ETYF 911 (1265)
T ss_pred HHhhhcccchHHHHHHHHHh-----ccChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcC-------cccc
Confidence 22222222233332222211 113333322222221 1244455554444432 1123
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHH----HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 037911 384 QIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYL----IVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMES 459 (609)
Q Consensus 384 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l----l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 459 (609)
.-.++.--+.|-+.+|+.++ .|+...+..+ ..-+.....+++|.-+|+...+ ..-.+.+
T Consensus 912 ~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a 974 (1265)
T KOG1920|consen 912 PECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKA 974 (1265)
T ss_pred HHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHH
Confidence 33344445566666666666 3455444443 3444556667777777666522 1234566
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 037911 460 LCKCDSVADALLLKDEMVDRNIKPSLS--TYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVN 537 (609)
Q Consensus 460 ~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 537 (609)
|...|+|.+|+.+..++... -|.. +-..|+.-+...++.-+|-++..+... .|. -.+..+++...++
T Consensus 975 ~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s---d~~-----~av~ll~ka~~~~ 1043 (1265)
T KOG1920|consen 975 YKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLS---DPE-----EAVALLCKAKEWE 1043 (1265)
T ss_pred HHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc---CHH-----HHHHHHhhHhHHH
Confidence 77778888888777666431 1211 124566667777888888887777753 121 2344556666788
Q ss_pred HHHHHHHHHH
Q 037911 538 KAEALLGFFA 547 (609)
Q Consensus 538 ~A~~~~~~~~ 547 (609)
+|.++.....
T Consensus 1044 eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1044 EALRVASKAK 1053 (1265)
T ss_pred HHHHHHHhcc
Confidence 8887765544
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0076 Score=43.07 Aligned_cols=65 Identities=18% Similarity=0.146 Sum_probs=42.1
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 037911 528 NGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKY 595 (609)
Q Consensus 528 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 595 (609)
..|.+.+++++|.++++.+...+ +.++..|.....++.+.|++++|.+.+++.++. .|+..+...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~--~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL--SPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH--CCCcHHHHH
Confidence 45666777777777777777653 234456666777777777777777777777744 555544433
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.76 Score=47.26 Aligned_cols=359 Identities=13% Similarity=0.077 Sum_probs=196.7
Q ss_pred HHHHhCCHHHHHHHHHHHH--------hCCCCCCHHHHH-----HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHH
Q 037911 179 AYVKVGLIRESFKTFRKTL--------DVGFQPSIVSCN-----FLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNI 245 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~-----~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 245 (609)
++.+..+.++-..+.+.+. .-|++.+..-|. .+++-+...+.+..|+++-+-+...-..- ...|..
T Consensus 398 ~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~ 476 (829)
T KOG2280|consen 398 ASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLE 476 (829)
T ss_pred cccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHH
Confidence 4445556666655554443 355666666554 35666777788888988888775421111 456666
Q ss_pred HHHHHHHcCC---hHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCcc----CCHhhHHHHHH
Q 037911 246 LTHVFCKNGD---VDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVL----PDLVTYTTLMN 318 (609)
Q Consensus 246 l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----p~~~~~~~ll~ 318 (609)
...-+.+..+ -+-+..+-+++... . .....|..+.+-....|+.+-|..+++.=...+.. .+..-+...+.
T Consensus 477 Wa~~kI~~~d~~d~~vld~I~~kls~~-~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~ 554 (829)
T KOG2280|consen 477 WARRKIKQSDKMDEEVLDKIDEKLSAK-L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALK 554 (829)
T ss_pred HHHHHHhccCccchHHHHHHHHHhccc-C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHH
Confidence 6666655532 22222333333322 2 34556777777777889998888887643322211 12233444455
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHH
Q 037911 319 GLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLS 398 (609)
Q Consensus 319 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 398 (609)
-+.+.|+.+....++-.+..+ .+...+. .-..+.-.|..+|.+..++. |..+ +-+.| +.++-.+
T Consensus 555 kaies~d~~Li~~Vllhlk~~---~~~s~l~------~~l~~~p~a~~lY~~~~r~~---~~~~---l~d~y-~q~dn~~ 618 (829)
T KOG2280|consen 555 KAIESGDTDLIIQVLLHLKNK---LNRSSLF------MTLRNQPLALSLYRQFMRHQ---DRAT---LYDFY-NQDDNHQ 618 (829)
T ss_pred HHHhcCCchhHHHHHHHHHHH---HHHHHHH------HHHHhchhhhHHHHHHHHhh---chhh---hhhhh-hcccchh
Confidence 556666666666666555543 0111111 11233445556665554431 1111 11112 2222222
Q ss_pred HHHHHH--HHHH----CCCCCCHHHHHHHHHHHHhcCCh---HHHH-------HHHHHH-HhCCCCCCHHHHHHHHHHHH
Q 037911 399 ALNLVV--ELQR----FGVSISRDIYDYLIVALCQDNRP---FAAT-------SLLERI-GQDGYVPSLEIYNELMESLC 461 (609)
Q Consensus 399 A~~~~~--~~~~----~~~~~~~~~~~~ll~~~~~~~~~---~~a~-------~~~~~~-~~~~~~~~~~~~~~l~~~~~ 461 (609)
++..|. .... .+..|+ ......++.+.... .++. .+.+.+ .+.+..-...+.+--+.-+.
T Consensus 619 ~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li 695 (829)
T KOG2280|consen 619 ALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLI 695 (829)
T ss_pred hhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHH
Confidence 222211 1000 111222 22233333333221 1111 122222 22232233344555566677
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 037911 462 KCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEA 541 (609)
Q Consensus 462 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 541 (609)
..|+..+|.++-.+..- ||-..|..-+.+++..+++++-+++-+.+. ++.-|.-...+|.+.|+.++|.+
T Consensus 696 ~~g~~k~a~ql~~~Fki----pdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~K 765 (829)
T KOG2280|consen 696 LIGQNKRAEQLKSDFKI----PDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKK 765 (829)
T ss_pred HccchHHHHHHHHhcCC----cchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhh
Confidence 77999999988776643 888889888999999999988777766653 24557778899999999999999
Q ss_pred HHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHH
Q 037911 542 LLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQ 578 (609)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 578 (609)
++.+... +...+.+|.+.|++.+|.+.-
T Consensus 766 Yiprv~~---------l~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 766 YIPRVGG---------LQEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hhhccCC---------hHHHHHHHHHhccHHHHHHHH
Confidence 8865432 226778888999998887653
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.11 Score=52.01 Aligned_cols=257 Identities=15% Similarity=0.093 Sum_probs=131.6
Q ss_pred HHhHHHHHHHHHhcCCHhHHHHHH---------HHHhhCCccCCHhhHHHHHHHHHhcCCH--HHHHHHHHHHHHCCCCC
Q 037911 275 LVTYNTLISSYCKKGRLNDAFYLY---------RIMYRRNVLPDLVTYTTLMNGLCKEGKV--REAHQLFHRMVHRGLSP 343 (609)
Q Consensus 275 ~~~~~~li~~~~~~g~~~~a~~~~---------~~~~~~~~~p~~~~~~~ll~~~~~~~~~--~~a~~~~~~m~~~g~~p 343 (609)
.+.+.+-+..|...|.+++|.++- +.+.... .+.-.++..=++|.+..+. -+...-+++++++|-.|
T Consensus 556 evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~A--LeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P 633 (1081)
T KOG1538|consen 556 EVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEA--LEALDFETARKAYIRVRDLRYLELISELEERKKRGETP 633 (1081)
T ss_pred cccccccchhhhhccchhhhhcccccceecchHHHHHHHH--HhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc
Confidence 334445555677777777776541 1111110 0222233444455554443 23444456677778777
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHH---HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 037911 344 DIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFT---CQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDY 420 (609)
Q Consensus 344 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 420 (609)
+.... ...++-.|++.+|.++|.+--..+-.....| .--..+-+...|..++-..+.++-.+-. -+..--..
T Consensus 634 ~~iLl---A~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WA--r~~kePka 708 (1081)
T KOG1538|consen 634 NDLLL---ADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWA--RNIKEPKA 708 (1081)
T ss_pred hHHHH---HHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHh--hhcCCcHH
Confidence 76533 3445566788888887754321100000000 0111233444444444443333321110 00011122
Q ss_pred HHHHHHhcCChHHHHHHHH---------HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 037911 421 LIVALCQDNRPFAATSLLE---------RIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRAL 491 (609)
Q Consensus 421 ll~~~~~~~~~~~a~~~~~---------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 491 (609)
....+...|+...|..+.- ++...--..+..+...+...+.+...+.-|-++|..|-+. ..+
T Consensus 709 AAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksi 779 (1081)
T KOG1538|consen 709 AAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSL 779 (1081)
T ss_pred HHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHH
Confidence 3344555566555554321 1111111223445555555566677777788888777542 345
Q ss_pred HHHHhcCCCHhHHHHHHHHHHHCCCCCCHHH-----------HHHHHHHHHccCCHHHHHHHHHHHHHc
Q 037911 492 ICCFCGIGRSGEAVSLMDEMLESGMLPDSQI-----------CRVLINGYCMEKDVNKAEALLGFFAKK 549 (609)
Q Consensus 492 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-----------~~~l~~~~~~~g~~~~A~~~~~~~~~~ 549 (609)
++.+...+++.+|..+-+...+ +.||... |.-.-.+|.+.|+-.+|..+++++...
T Consensus 780 VqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 780 VQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 6667788888888888777653 3344321 344456778888888888888877654
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.06 Score=44.85 Aligned_cols=59 Identities=10% Similarity=0.178 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 037911 208 CNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIE 267 (609)
Q Consensus 208 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 267 (609)
...++..+...|++++|..+++.+.... +.|...|..+|.+|...|+...|.+.|+.+.
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3344445555566666666666555532 3345555556666666666666666555543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.023 Score=50.96 Aligned_cols=90 Identities=16% Similarity=0.159 Sum_probs=77.6
Q ss_pred CCChhHHHHHHHHhhhc-CCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHH
Q 037911 103 QSDSVSALTFFNWVKND-LEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYV 181 (609)
Q Consensus 103 ~~~~~~A~~~f~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 181 (609)
.|++..|..-|..-++. ++-.-.+.++.+|...+..+|++++|...|..+.+..+..|..++.+..+.. ...
T Consensus 154 sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~-------~~~ 226 (262)
T COG1729 154 SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV-------SLG 226 (262)
T ss_pred cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH-------HHH
Confidence 46899999988877764 3333478899999999999999999999999999998888888888888888 889
Q ss_pred HhCCHHHHHHHHHHHHhC
Q 037911 182 KVGLIRESFKTFRKTLDV 199 (609)
Q Consensus 182 ~~g~~~~A~~~~~~~~~~ 199 (609)
+.|+.++|..+|+++.+.
T Consensus 227 ~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 227 RLGNTDEACATLQQVIKR 244 (262)
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 999999999999999874
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.66 Score=44.70 Aligned_cols=145 Identities=16% Similarity=0.194 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHH-HHHHHH
Q 037911 451 EIYNELMESLCKCDSVADALLLKDEMVDRN-IKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQI-CRVLIN 528 (609)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~ 528 (609)
.+|-..+....+..-++.|..+|-+..+.+ +.+++..+++++..++ .|+..-|..+|+--... -||... ..-.+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 345566777777788899999999999887 6678888899988665 57888899999876653 344444 456677
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCC--hhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHh
Q 037911 529 GYCMEKDVNKAEALLGFFAKKFQIYD--TESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMIHSLW 601 (609)
Q Consensus 529 ~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 601 (609)
.+...++-+.|..+|+..+..- ..+ ...|..++.--..-|+...+..+=++|.+. .|-..+......-+.
T Consensus 475 fLi~inde~naraLFetsv~r~-~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~ 546 (660)
T COG5107 475 FLIRINDEENARALFETSVERL-EKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHH-HHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHh
Confidence 7888899999999999666432 122 367999999888999999999999999855 777766666665554
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.19 Score=41.69 Aligned_cols=87 Identities=14% Similarity=-0.026 Sum_probs=52.6
Q ss_pred HhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHH
Q 037911 495 FCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKL 574 (609)
Q Consensus 495 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 574 (609)
+...|++++|..+|.-+...+ .-+..-+..|..++-..+++++|...+....... .-|+..+-....+|...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHH
Confidence 345667777777666665543 2244455666666666667777777666555443 23444455566666667777777
Q ss_pred HHHHHHHHH
Q 037911 575 MELQKRFLR 583 (609)
Q Consensus 575 ~~~~~~m~~ 583 (609)
...|+...+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 776666664
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.014 Score=41.66 Aligned_cols=56 Identities=16% Similarity=0.360 Sum_probs=29.6
Q ss_pred HHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhC
Q 037911 134 HILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDV 199 (609)
Q Consensus 134 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 199 (609)
+++.+.+++++|.++++.++.. .|.+...+..... .|.+.|++++|.+.|++..+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~~~a~-------~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALEL---DPDDPELWLQRAR-------CLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHh---CcccchhhHHHHH-------HHHHhccHHHHHHHHHHHHHH
Confidence 3455555555555555555544 2334444444444 555555555555555555553
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.11 Score=51.76 Aligned_cols=169 Identities=15% Similarity=0.134 Sum_probs=111.7
Q ss_pred CCChHHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHH
Q 037911 89 HLGAHEISRVLLRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQD 168 (609)
Q Consensus 89 ~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 168 (609)
.++...+.-.+.-.++|++.+++..+...--+.+ ...-...+++-+.+.|..+.|+.+.++-..+ |.
T Consensus 260 ~ld~~~~~fk~av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r----------Fe- 326 (443)
T PF04053_consen 260 ELDLSELEFKTAVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPDHR----------FE- 326 (443)
T ss_dssp E--HHHHHHHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH----------HH-
T ss_pred EECHHHHHHHHHHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChHHH----------hH-
Confidence 3455555555666678999877777522211112 2556788999999999999998876544332 22
Q ss_pred HhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 037911 169 LISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTH 248 (609)
Q Consensus 169 l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 248 (609)
...+.|+++.|.++.++ ..+...|..|.....+.|+++-|.+.|.+... +..|+-
T Consensus 327 ----------LAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~l 381 (443)
T PF04053_consen 327 ----------LALQLGNLDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLL 381 (443)
T ss_dssp ----------HHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHH
T ss_pred ----------HHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHH
Confidence 34588999999887664 34677999999999999999999999998653 456777
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHH
Q 037911 249 VFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIM 301 (609)
Q Consensus 249 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 301 (609)
.|.-.|+.++..++.+.....|- +|....++.-.|+.++..+++.+.
T Consensus 382 Ly~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 382 LYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 78889999999888888877652 455556666678888888877654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.76 Score=44.43 Aligned_cols=83 Identities=14% Similarity=0.091 Sum_probs=48.8
Q ss_pred HHHhCCChhHHHHHHHHHHHhhCCC-CCcHH-hHHHHhhcc---ccchhHHHHhCCHHHHHHHHHHHHhC----CCCCCH
Q 037911 135 ILAWNNKFSFAMKMLCELVELVKDC-PHSVD-VFQDLISCT---EDCNWAYVKVGLIRESFKTFRKTLDV----GFQPSI 205 (609)
Q Consensus 135 ~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~-~~~~l~~~~---~~~~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~ 205 (609)
...+.+.+++|.+.+........+. ++--+ -+..++... ......+...|++.++..+++++... ...-+.
T Consensus 88 ~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~ 167 (549)
T PF07079_consen 88 VAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNS 167 (549)
T ss_pred HHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccH
Confidence 3467788888888887766542222 11111 011111100 00111788999999999999988763 344788
Q ss_pred HHHHHHHHHHHh
Q 037911 206 VSCNFLLNGLLK 217 (609)
Q Consensus 206 ~~~~~ll~~~~~ 217 (609)
.+||.++-.+.+
T Consensus 168 d~yd~~vlmlsr 179 (549)
T PF07079_consen 168 DMYDRAVLMLSR 179 (549)
T ss_pred HHHHHHHHHHhH
Confidence 899986555543
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0069 Score=44.00 Aligned_cols=66 Identities=14% Similarity=0.320 Sum_probs=51.3
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCC----cHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHh
Q 037911 126 SSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPH----SVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLD 198 (609)
Q Consensus 126 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 198 (609)
..+|+.+..+|...|++++|+..++++++.....++ ...++..+.. .|...|++++|++.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~-------~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGE-------CYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH-------HHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHh
Confidence 457889999999999999999999999876322222 2345566666 89999999999999998765
|
... |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.11 Score=41.83 Aligned_cols=64 Identities=6% Similarity=-0.004 Sum_probs=53.6
Q ss_pred hcCCChhHHHHHHHHhhhcCCCCC-CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHH
Q 037911 101 RCQSDSVSALTFFNWVKNDLEIKP-TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVD 164 (609)
Q Consensus 101 ~~~~~~~~A~~~f~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 164 (609)
...|++..|.+.|+.+..+..+.+ ...+...++.++.+.|++++|...++++++..+.+|....
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdY 85 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDY 85 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccH
Confidence 345899999999999998765554 6788889999999999999999999999999766654443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0077 Score=43.74 Aligned_cols=61 Identities=15% Similarity=0.055 Sum_probs=34.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcC----C-CCC-hhcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037911 522 ICRVLINGYCMEKDVNKAEALLGFFAKKF----Q-IYD-TESYNAVFNMFAEDGDLSKLMELQKRFL 582 (609)
Q Consensus 522 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 582 (609)
+++.+...|...|++++|++.+++..+.. . .++ ..++..+..++...|++++|++++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45555566666666666666665554331 0 111 2445666666677777777777766655
|
... |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.94 Score=42.89 Aligned_cols=314 Identities=16% Similarity=0.144 Sum_probs=200.7
Q ss_pred cCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHH--HhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhH
Q 037911 102 CQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHIL--AWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWA 179 (609)
Q Consensus 102 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 179 (609)
.-..|..+.++|+..+++.| |..|-..+ +-.|+-..|.++-.+..+. ...+...+..++.+. +
T Consensus 65 iw~sP~t~~Ryfr~rKRdrg-------yqALStGliAagAGda~lARkmt~~~~~l---lssDqepLIhlLeAQ-----a 129 (531)
T COG3898 65 IWESPYTARRYFRERKRDRG-------YQALSTGLIAAGAGDASLARKMTARASKL---LSSDQEPLIHLLEAQ-----A 129 (531)
T ss_pred HHhCcHHHHHHHHHHHhhhH-------HHHHhhhhhhhccCchHHHHHHHHHHHhh---hhccchHHHHHHHHH-----H
Confidence 33578889999998887554 44444444 4568888898887776643 223334444444421 4
Q ss_pred HHHhCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChH
Q 037911 180 YVKVGLIRESFKTFRKTLDVGFQPSIVS--CNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVD 257 (609)
Q Consensus 180 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 257 (609)
-.-.|++++|.+-|+.|.+ .|.... ...|.-.--+.|..+.|...-++.-..- +.-.+.+...+...|..|+++
T Consensus 130 al~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd 205 (531)
T COG3898 130 ALLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWD 205 (531)
T ss_pred HHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChH
Confidence 5578999999999999986 233332 2233333356789999999888876542 334678888999999999999
Q ss_pred HHHHHHHHHHHcC-CCCCHH--hHHHHHHHHH---hcCCHhHHHHHHHHHhhCCccCCHhh-HHHHHHHHHhcCCHHHHH
Q 037911 258 KVNGFLEKIEEEG-FDPDLV--TYNTLISSYC---KKGRLNDAFYLYRIMYRRNVLPDLVT-YTTLMNGLCKEGKVREAH 330 (609)
Q Consensus 258 ~a~~~~~~~~~~~-~~~~~~--~~~~li~~~~---~~g~~~~a~~~~~~~~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~ 330 (609)
.|+++++.-.... +.++.. .-..|+.+-. -.-+...|.+.-.+..+ +.||..- -......+.+.|+..++-
T Consensus 206 ~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~ 283 (531)
T COG3898 206 GALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGS 283 (531)
T ss_pred HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhh
Confidence 9999998766542 233332 1222332211 12345666666555544 3455332 223456788999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCcc-CHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 037911 331 QLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGN-GIYP-DTFTCQIIVQGYGKEGRLLSALNLVVELQR 408 (609)
Q Consensus 331 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 408 (609)
.+++.+=+....|+. + .+..+.+.|+. +..-++...+. ..+| +......+..+-...|++..|..--+....
T Consensus 284 ~ilE~aWK~ePHP~i--a--~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r 357 (531)
T COG3898 284 KILETAWKAEPHPDI--A--LLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR 357 (531)
T ss_pred hHHHHHHhcCCChHH--H--HHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 999999887555543 2 33345566663 33333322211 1233 556677778888889999888776666555
Q ss_pred CCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHhC
Q 037911 409 FGVSISRDIYDYLIVALCQD-NRPFAATSLLERIGQD 444 (609)
Q Consensus 409 ~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~ 444 (609)
. .|....|..+.+.-... |+-.++...+-+....
T Consensus 358 ~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 358 E--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred h--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 4 67788888888766544 8878888877777554
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.65 Score=40.94 Aligned_cols=211 Identities=12% Similarity=0.062 Sum_probs=104.7
Q ss_pred CCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCC
Q 037911 122 IKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGF 201 (609)
Q Consensus 122 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~ 201 (609)
+..-...|..-..+|...++|++|...+.++.+-+ ..+...|.. ...++.|..+.+++.+.
T Consensus 27 ~dgaas~yekAAvafRnAk~feKakdcLlkA~~~y---EnnrslfhA--------------AKayEqaamLake~~kl-- 87 (308)
T KOG1585|consen 27 WDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGY---ENNRSLFHA--------------AKAYEQAAMLAKELSKL-- 87 (308)
T ss_pred chhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH---HhcccHHHH--------------HHHHHHHHHHHHHHHHh--
Confidence 33445666667778888888998888887777431 122222222 12234444444444431
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CC--CCCHH
Q 037911 202 QPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEE---GF--DPDLV 276 (609)
Q Consensus 202 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~--~~~~~ 276 (609)
+--+..|+-....|...|..+.|-..+++.-+ ..+.-+.++|+++|++.... +- +.-..
T Consensus 88 sEvvdl~eKAs~lY~E~GspdtAAmaleKAak----------------~lenv~Pd~AlqlYqralavve~~dr~~ma~e 151 (308)
T KOG1585|consen 88 SEVVDLYEKASELYVECGSPDTAAMALEKAAK----------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFE 151 (308)
T ss_pred HHHHHHHHHHHHHHHHhCCcchHHHHHHHHHH----------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 12223444555667777777776666665433 11223334444444432211 00 01122
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHhhC----CccCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHH
Q 037911 277 TYNTLISSYCKKGRLNDAFYLYRIMYRR----NVLPDL-VTYTTLMNGLCKEGKVREAHQLFHRMVHRG---LSPDIVSY 348 (609)
Q Consensus 277 ~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~~~ 348 (609)
.+...-+.+++..++++|-..+.+-... .-.++. ..|...|-.+.-..++..|.+.++.-.+.+ -.-|..+.
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 2333445556666665554444332211 011111 224444445555667777777777744432 12345566
Q ss_pred HHHHHHHHHcCChHHHHHHH
Q 037911 349 NTLIFAYCKEGKMQESKSLL 368 (609)
Q Consensus 349 ~~li~~~~~~g~~~~A~~~~ 368 (609)
..|+.+| ..|+.+++..++
T Consensus 232 enLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 232 ENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHh-ccCCHHHHHHHH
Confidence 6677666 456666655544
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.14 Score=41.28 Aligned_cols=87 Identities=16% Similarity=0.120 Sum_probs=68.1
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCC
Q 037911 125 TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPS 204 (609)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 204 (609)
++..+..-+....+.|+|++|.+.|+.+..+.+..+-....-..++. +|.+.|++++|+..+++.++.....-
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~y-------ayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAY-------AYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHH-------HHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 45555566667778899999999999999987777777788888888 89999999999999999998764433
Q ss_pred HHHHHHHHHHHHhc
Q 037911 205 IVSCNFLLNGLLKL 218 (609)
Q Consensus 205 ~~~~~~ll~~~~~~ 218 (609)
-..|...+.+++..
T Consensus 82 ~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 82 NVDYAYYMRGLSYY 95 (142)
T ss_pred CccHHHHHHHHHHH
Confidence 44566666666543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.31 E-value=1.8 Score=45.40 Aligned_cols=146 Identities=12% Similarity=0.124 Sum_probs=99.7
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 037911 131 LIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNF 210 (609)
Q Consensus 131 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 210 (609)
..++-|.+.|++++|...|-+.+.. . ..+. ++. -|....+..+-..+++.+.+.|+ .+...-..
T Consensus 373 kYgd~Ly~Kgdf~~A~~qYI~tI~~---l-e~s~----Vi~-------kfLdaq~IknLt~YLe~L~~~gl-a~~dhttl 436 (933)
T KOG2114|consen 373 KYGDYLYGKGDFDEATDQYIETIGF---L-EPSE----VIK-------KFLDAQRIKNLTSYLEALHKKGL-ANSDHTTL 436 (933)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHccc---C-ChHH----HHH-------HhcCHHHHHHHHHHHHHHHHccc-ccchhHHH
Confidence 3456667899999999988887743 1 2222 233 46667778888889999999884 45556678
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 037911 211 LLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGR 290 (609)
Q Consensus 211 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 290 (609)
|+.+|.+.++.++-.++.+.-. .|.. ..-....+..+.+.+-.++|.-+-.+... +......++ -..|+
T Consensus 437 LLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ill---e~~~n 505 (933)
T KOG2114|consen 437 LLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDILL---EDLHN 505 (933)
T ss_pred HHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHH---HHhcC
Confidence 9999999999998888776654 3321 11234566777777777887776665542 334444443 45688
Q ss_pred HhHHHHHHHHHhh
Q 037911 291 LNDAFYLYRIMYR 303 (609)
Q Consensus 291 ~~~a~~~~~~~~~ 303 (609)
+++|++.+..+.-
T Consensus 506 y~eAl~yi~slp~ 518 (933)
T KOG2114|consen 506 YEEALRYISSLPI 518 (933)
T ss_pred HHHHHHHHhcCCH
Confidence 9999999887643
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.47 Score=47.72 Aligned_cols=257 Identities=14% Similarity=0.126 Sum_probs=142.9
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHH---------HHHHHCCCCCCHHHHHHHHHHHHHcCCh--HHHHHHHHHHHHCCC
Q 037911 308 PDLVTYTTLMNGLCKEGKVREAHQLF---------HRMVHRGLSPDIVSYNTLIFAYCKEGKM--QESKSLLYEMMGNGI 376 (609)
Q Consensus 308 p~~~~~~~ll~~~~~~~~~~~a~~~~---------~~m~~~g~~p~~~~~~~li~~~~~~g~~--~~A~~~~~~~~~~~~ 376 (609)
|....+.+=+-.|...|.+++|.++- +.+... ..+.-.++..=.+|.+..+. -+...-++++.++|-
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge 631 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGE 631 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCC
Confidence 34444555566777888888876532 111111 11333445555666665553 344555677788887
Q ss_pred ccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHhcCChHHHHHHHHHHH---hCCCCCC
Q 037911 377 YPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVS----ISRDIYDYLIVALCQDNRPFAATSLLERIG---QDGYVPS 449 (609)
Q Consensus 377 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~ 449 (609)
.|+.... ...++-.|++.+|-++|.+--..+-. .|...| -..+-+...|..++-..++++-. ..--.|.
T Consensus 632 ~P~~iLl---A~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMF-D~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk 707 (1081)
T KOG1538|consen 632 TPNDLLL---ADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMF-DYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK 707 (1081)
T ss_pred CchHHHH---HHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHH-HHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH
Confidence 7876542 33445566666766666543221100 011111 12334455555444444444331 1111222
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHH------HHHHCCCC---CCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCH
Q 037911 450 LEIYNELMESLCKCDSVADALLLKD------EMVDRNIK---PSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDS 520 (609)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~------~~~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 520 (609)
+..+.+...|+.++|..+.- .+.+-+-+ .+..+...+...+.+...+.-|-++|..|-+.
T Consensus 708 -----aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~------ 776 (1081)
T KOG1538|consen 708 -----AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL------ 776 (1081)
T ss_pred -----HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH------
Confidence 23445556677777766532 11222222 23344555555566677778888888888421
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhc-----------HHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037911 521 QICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTES-----------YNAVFNMFAEDGDLSKLMELQKRFLRLGF 586 (609)
Q Consensus 521 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-----------~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 586 (609)
..+++.....+++.+|..+-+..-+. .+|+.. +...-.+|.++|+..||.++++++....+
T Consensus 777 ---ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnnav 848 (1081)
T KOG1538|consen 777 ---KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNAV 848 (1081)
T ss_pred ---HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhhh
Confidence 25677788999999999998766543 344321 33344678899999999999999875543
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.28 E-value=1.2 Score=43.06 Aligned_cols=130 Identities=16% Similarity=0.176 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHH
Q 037911 416 DIYDYLIVALCQDNRPFAATSLLERIGQDG-YVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTY-RALIC 493 (609)
Q Consensus 416 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~li~ 493 (609)
.+|...+....+....+.|..+|-+..+.+ ..+++.++++++..++. |+..-|.++|+--... . ||...| +-.+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~-f-~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK-F-PDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh-C-CCchHHHHHHHH
Confidence 456667777777766788889999997777 56888899999998876 8888899999865543 2 555544 45566
Q ss_pred HHhcCCCHhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 037911 494 CFCGIGRSGEAVSLMDEMLESGMLPD--SQICRVLINGYCMEKDVNKAEALLGFFAKK 549 (609)
Q Consensus 494 ~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 549 (609)
-+...++-+.|..+|+..+.. +.-+ ..+|..++..-..-|++..+..+=+.+...
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 677889999999999977653 3333 567888999888899999888888888765
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.27 E-value=1.1 Score=42.51 Aligned_cols=294 Identities=12% Similarity=0.094 Sum_probs=166.3
Q ss_pred HHHHHHHHHH--hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH--HHcCChHHHHHHHHHHHHcCCCCCHH--hHHH
Q 037911 207 SCNFLLNGLL--KLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVF--CKNGDVDKVNGFLEKIEEEGFDPDLV--TYNT 280 (609)
Q Consensus 207 ~~~~ll~~~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~ 280 (609)
.|..|-.++. -.|+-..|.++-.+..+. +..|....-.++.+- .-.|+.+.|.+-|+.|... |... -...
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence 3445544443 357777777776665432 344555444444433 3458899999999888853 2221 1222
Q ss_pred HHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHH--HHHHHHHHH-
Q 037911 281 LISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRG-LSPDIVS--YNTLIFAYC- 356 (609)
Q Consensus 281 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~--~~~li~~~~- 356 (609)
|.-..-+.|+.+.|.++-++.-..-.. -...+...+...|..|+++.|+++.+.-.+.. +.++..- -..|+.+-.
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~ 238 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM 238 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence 333334578888888877777655333 24566778888888999999998888776542 3333321 122222211
Q ss_pred --HcCChHHHHHHHHHHHHCCCccCHHH-HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 037911 357 --KEGKMQESKSLLYEMMGNGIYPDTFT-CQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFA 433 (609)
Q Consensus 357 --~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 433 (609)
-.-+...|...-.+..+ +.||... -..-..++.+.|+..++-.+++.+-+....|+ +.. +....+.|+ .
T Consensus 239 s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~--lY~~ar~gd--t 310 (531)
T COG3898 239 SLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IAL--LYVRARSGD--T 310 (531)
T ss_pred HHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHH--HHHHhcCCC--c
Confidence 11234445544444443 3455433 23334567788888888888888877644443 221 222334443 3
Q ss_pred HHHHHHHH--HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-CCCHhHHHHHHHH
Q 037911 434 ATSLLERI--GQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCG-IGRSGEAVSLMDE 510 (609)
Q Consensus 434 a~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~ 510 (609)
+..-+++. ...--+.+......+..+-...|++..|..--+.... ..|....|..|.+.-.. .|+-.++...+-+
T Consensus 311 a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAq 388 (531)
T COG3898 311 ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQ 388 (531)
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHH
Confidence 33333333 1111123445556666777777777777665555544 33667777777665543 4788888888777
Q ss_pred HHHCC
Q 037911 511 MLESG 515 (609)
Q Consensus 511 ~~~~~ 515 (609)
.++..
T Consensus 389 av~AP 393 (531)
T COG3898 389 AVKAP 393 (531)
T ss_pred HhcCC
Confidence 77643
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.06 Score=44.84 Aligned_cols=65 Identities=20% Similarity=0.327 Sum_probs=42.4
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh-----hCCCCCCHHHHH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMG-----RIGICPNTHTFN 244 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-----~~~~~~~~~~~~ 244 (609)
.+...|++++|+...+++.... +-+...|..+|.+|...|+...|.+.|+++. +.|+.|+..+-.
T Consensus 71 ~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 71 ALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 5677778888888887777765 6777788888888888888888877777763 347777766543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.20 E-value=1.3 Score=42.71 Aligned_cols=163 Identities=18% Similarity=0.161 Sum_probs=85.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCC---CCCCHHHHHHHHHHHHH---cCChHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 037911 210 FLLNGLLKLNCIDQCWQVYEEMGRIG---ICPNTHTFNILTHVFCK---NGDVDKVNGFLEKIEEEGFDPDLVTYNTLIS 283 (609)
Q Consensus 210 ~ll~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 283 (609)
.++-.|....+++..+++.+.+.... +.-....-....-++-+ .|+.++|++++..+......++..+|..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 44556777888888888888887631 11111222223334455 7888888888888666555677777777776
Q ss_pred HHHh---------cCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCC-HH---HHHHHH----HHHHHCC---CCC
Q 037911 284 SYCK---------KGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGK-VR---EAHQLF----HRMVHRG---LSP 343 (609)
Q Consensus 284 ~~~~---------~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~-~~---~a~~~~----~~m~~~g---~~p 343 (609)
.|-. ....++|+..|.+.-+.. ||...--.++..+...|. .+ +..++- ....+.| -..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 5532 112566666666655432 333322222222222222 11 111211 1111222 123
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 037911 344 DIVSYNTLIFAYCKEGKMQESKSLLYEMMGN 374 (609)
Q Consensus 344 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 374 (609)
|...+.+++.++.-.|+.++|.+..++|.+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 4444555555666666666666666666544
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.056 Score=52.48 Aligned_cols=99 Identities=16% Similarity=0.132 Sum_probs=71.7
Q ss_pred CCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcH
Q 037911 483 PSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDS----QICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESY 558 (609)
Q Consensus 483 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 558 (609)
.+...++.+..+|.+.|++++|+..|++.++. .|+. ..|..+..+|...|+.++|...+++..+.+ ...|
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels----n~~f 146 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY----NLKF 146 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----chhH
Confidence 35678999999999999999999999999864 5664 358899999999999999999999999752 1123
Q ss_pred HHHHH--HHHhcCCHHHHHHHHHHHHHcCCC
Q 037911 559 NAVFN--MFAEDGDLSKLMELQKRFLRLGFA 587 (609)
Q Consensus 559 ~~l~~--~~~~~g~~~~A~~~~~~m~~~g~~ 587 (609)
..+.. .+....+.++..++++.+.+.|..
T Consensus 147 ~~i~~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 147 STILNDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred HHHHhCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 21111 112223445677777777776653
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.14 Score=46.02 Aligned_cols=98 Identities=10% Similarity=0.008 Sum_probs=68.3
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCC--CCCCHH
Q 037911 129 YCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVG--FQPSIV 206 (609)
Q Consensus 129 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~ 206 (609)
|+.- -.+.+.|+|.+|...|...++.++..+.....+--|.. ++...|++++|..+|..+.+.- .+.-+.
T Consensus 145 Y~~A-~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe-------~~y~qg~y~~Aa~~f~~~~k~~P~s~KApd 216 (262)
T COG1729 145 YNAA-LDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGE-------SLYAQGDYEDAAYIFARVVKDYPKSPKAPD 216 (262)
T ss_pred HHHH-HHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHH-------HHHhcccchHHHHHHHHHHHhCCCCCCChH
Confidence 4443 34456677888888888888877666666666666777 7888888888888888877632 122345
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 037911 207 SCNFLLNGLLKLNCIDQCWQVYEEMGRI 234 (609)
Q Consensus 207 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 234 (609)
.+--|.....+.|+.++|..+|+++.+.
T Consensus 217 allKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 217 ALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 6666667777777888888888777664
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=96.07 E-value=2.5 Score=44.86 Aligned_cols=192 Identities=14% Similarity=0.178 Sum_probs=112.5
Q ss_pred cCCChhHHHHHHHHhhhcCCCCC--CHHhHHHHHHHHH-hCCChhHHHHHHHHHHHhhCCCCCcHH----hHHHHhhccc
Q 037911 102 CQSDSVSALTFFNWVKNDLEIKP--TSSNYCLIVHILA-WNNKFSFAMKMLCELVELVKDCPHSVD----VFQDLISCTE 174 (609)
Q Consensus 102 ~~~~~~~A~~~f~~~~~~~~~~~--~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~ 174 (609)
.++-...|++.++-+.++...+| ...++..++++|. ...+++.|+..+++.+..... +.-.+ .-..++.
T Consensus 33 Y~kLI~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~~d~k~~~~~ll~~--- 108 (608)
T PF10345_consen 33 YYKLIATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER-HRLTDLKFRCQFLLAR--- 108 (608)
T ss_pred HHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHH---
Confidence 33444567888888876555555 5667777888887 668999999999988766322 11111 1112233
Q ss_pred cchhHHHHhCCHHHHHHHHHHHHhC----CCCCCHHHHHHH-HHHHHhcCChHHHHHHHHHHhhCC---CCCCHHHHHHH
Q 037911 175 DCNWAYVKVGLIRESFKTFRKTLDV----GFQPSIVSCNFL-LNGLLKLNCIDQCWQVYEEMGRIG---ICPNTHTFNIL 246 (609)
Q Consensus 175 ~~~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~l 246 (609)
.|.+.+... |...+++.++. +..+-...+..+ +..+...++...|.+.++.+...- ..|-...+..+
T Consensus 109 ----i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l 183 (608)
T PF10345_consen 109 ----IYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASL 183 (608)
T ss_pred ----HHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHH
Confidence 555555555 88888887652 122223333443 333334478999999988875432 23444455555
Q ss_pred HHHHH--HcCChHHHHHHHHHHHHcCC---------CCCHHhHHHHHHHH--HhcCCHhHHHHHHHHHh
Q 037911 247 THVFC--KNGDVDKVNGFLEKIEEEGF---------DPDLVTYNTLISSY--CKKGRLNDAFYLYRIMY 302 (609)
Q Consensus 247 ~~~~~--~~g~~~~a~~~~~~~~~~~~---------~~~~~~~~~li~~~--~~~g~~~~a~~~~~~~~ 302 (609)
+.+.. ..+..+.+.+.++.+..... .|...+|..+++.+ ...|+++.+...++++.
T Consensus 184 ~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 184 SEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55443 34556677777766633211 23455666666544 45777667766665554
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.49 Score=37.25 Aligned_cols=31 Identities=16% Similarity=0.170 Sum_probs=11.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037911 449 SLEIYNELMESLCKCDSVADALLLKDEMVDR 479 (609)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 479 (609)
++...-.+..+|.+.|+..++.+++.+.-+.
T Consensus 119 ~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 119 NPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3333333444444444444444444444333
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.09 Score=51.08 Aligned_cols=67 Identities=12% Similarity=0.039 Sum_probs=50.7
Q ss_pred CCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcH---HhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhC
Q 037911 123 KPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSV---DVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDV 199 (609)
Q Consensus 123 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 199 (609)
+.++..|+.+..+|...|++++|+..|++.++. .|.+. ..+..+.. +|...|++++|+..++++++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAc-------aya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKAC-------CHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHHh
Confidence 446778888888888888888888888888876 23333 23555555 788888888888888888874
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.99 Score=39.86 Aligned_cols=198 Identities=13% Similarity=0.147 Sum_probs=106.1
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDK 258 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (609)
+|....++++|...+.+..+. ..-+...|. ..+.++.|.-+.++|.+. .--+..|+-....|...|..+.
T Consensus 40 afRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E~Gspdt 109 (308)
T KOG1585|consen 40 AFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVECGSPDT 109 (308)
T ss_pred HHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHhCCcch
Confidence 788888888888888877641 122222221 123355566666666552 2224455666777888888887
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhC---C--ccCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 037911 259 VNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRR---N--VLPDLVTYTTLMNGLCKEGKVREAHQLF 333 (609)
Q Consensus 259 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 333 (609)
|-..+++.-+. .++-++++|+++|++.... + ...-...+..+-+.+.+...+++|-..+
T Consensus 110 AAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~ 173 (308)
T KOG1585|consen 110 AAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAF 173 (308)
T ss_pred HHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHH
Confidence 77777765432 2334555566665554321 0 0011223344455666666766665544
Q ss_pred HHHHHC----CCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---ccCHHHHHHHHHHHHccCCHHHHHHHH
Q 037911 334 HRMVHR----GLSPDI-VSYNTLIFAYCKEGKMQESKSLLYEMMGNGI---YPDTFTCQIIVQGYGKEGRLLSALNLV 403 (609)
Q Consensus 334 ~~m~~~----g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~ 403 (609)
.+-... .--++. ..|...|-.+.-..++..|...++.--+.+- .-+..+...|+.+| ..|+.+++-+++
T Consensus 174 lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 174 LKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 432211 011121 2344555556666778888888877443321 22445566666665 345666555544
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.44 Score=48.34 Aligned_cols=117 Identities=13% Similarity=0.064 Sum_probs=53.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCChHHHHHHHHHHhhCC---CCCCHHHHHHHHHHHHHcCChHHH
Q 037911 184 GLIRESFKTFRKTLDVGFQPSIVSCNFL-LNGLLKLNCIDQCWQVYEEMGRIG---ICPNTHTFNILTHVFCKNGDVDKV 259 (609)
Q Consensus 184 g~~~~A~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~l~~~~~~~g~~~~a 259 (609)
...+.|.++++.+.+. -|+...|... .+.+...|++++|++.|++..... -+.....+--+...+.-.+++++|
T Consensus 247 ~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 3455555555555543 2333333322 234444555555555555433210 011122233344455566666666
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHH-HHHHhcCCH-------hHHHHHHHHHhh
Q 037911 260 NGFLEKIEEEGFDPDLVTYNTLI-SSYCKKGRL-------NDAFYLYRIMYR 303 (609)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~li-~~~~~~g~~-------~~a~~~~~~~~~ 303 (609)
.+.|..+.+..-- +...|.-+. .++...|+. ++|.++|++...
T Consensus 325 ~~~f~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 325 AEYFLRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 6666666654211 222222222 333445555 666666666543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.97 E-value=2.4 Score=43.84 Aligned_cols=323 Identities=11% Similarity=0.071 Sum_probs=182.0
Q ss_pred hhCCCCCCHHHHHH-----HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC--HhHHHHHHHHHhhC
Q 037911 232 GRIGICPNTHTFNI-----LTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGR--LNDAFYLYRIMYRR 304 (609)
Q Consensus 232 ~~~~~~~~~~~~~~-----l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~ 304 (609)
...|++.+..-|.. ++.-+...+.+..|+++-..+...-.. ....|.....-+.+..+ -+++++..++-...
T Consensus 424 ~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~ 502 (829)
T KOG2280|consen 424 VRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA 502 (829)
T ss_pred cccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcc
Confidence 35577777776654 566677788899999988777533212 15667777777776643 23344444433333
Q ss_pred CccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCH
Q 037911 305 NVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGL----SPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDT 380 (609)
Q Consensus 305 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~----~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 380 (609)
.. -+...|..+.......|+.+.|..+++.=...+. -.+..-+...+.-+.+.|+.+-...++-.+..+ .+.
T Consensus 503 ~~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~ 578 (829)
T KOG2280|consen 503 KL-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNR 578 (829)
T ss_pred cC-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHH
Confidence 23 2456788888888899999999888764222210 011222333444455566666555555554432 111
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH--HHH-HhCCCCCCHHHHHHHH
Q 037911 381 FTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLL--ERI-GQDGYVPSLEIYNELM 457 (609)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~--~~~-~~~~~~~~~~~~~~l~ 457 (609)
..+... ..+...|..+|.+..+.. +.. .+-..|....+ ..+...+ +.. ......+-........
T Consensus 579 s~l~~~------l~~~p~a~~lY~~~~r~~---~~~---~l~d~y~q~dn-~~~~a~~~~q~~~~~~~~~~r~~~lk~~a 645 (829)
T KOG2280|consen 579 SSLFMT------LRNQPLALSLYRQFMRHQ---DRA---TLYDFYNQDDN-HQALASFHLQASYAAETIEGRIPALKTAA 645 (829)
T ss_pred HHHHHH------HHhchhhhHHHHHHHHhh---chh---hhhhhhhcccc-hhhhhhhhhhhhhhhhhhcccchhHHHHH
Confidence 222221 123445556665554421 111 12222333333 3332222 211 0000112222233344
Q ss_pred HHHHhcCCHH----------HHHHHHHHHHH-CCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHH
Q 037911 458 ESLCKCDSVA----------DALLLKDEMVD-RNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVL 526 (609)
Q Consensus 458 ~~~~~~g~~~----------~A~~~~~~~~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 526 (609)
..+.+..... +-+++.+.+.. .|..-...+.+--+.-+...|+..+|.++-.+.. -||...|-.-
T Consensus 646 ~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk 721 (829)
T KOG2280|consen 646 NAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLK 721 (829)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHH
Confidence 4444433311 12223333332 2322333444555556777899999999988884 6899999999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037911 527 INGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFL 582 (609)
Q Consensus 527 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 582 (609)
+.+++..+++++-+++-+... .+.-|.-.+.+|.++|+.+||.+++-+..
T Consensus 722 ~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 722 LTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred HHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 999999999988776654332 36678999999999999999999998875
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.089 Score=42.02 Aligned_cols=51 Identities=10% Similarity=0.101 Sum_probs=29.7
Q ss_pred CccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH
Q 037911 305 NVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHR-GLSPDIVSYNTLIFAY 355 (609)
Q Consensus 305 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~ 355 (609)
...|+..+..+++.+|+.+|++..|+++.+...+. +++.+..+|..|+.-.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34566666666666666666666666666665543 4444555555555543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.4 Score=37.73 Aligned_cols=139 Identities=11% Similarity=0.099 Sum_probs=78.8
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHH
Q 037911 427 QDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVS 506 (609)
Q Consensus 427 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 506 (609)
-.|..++..+++.+...+ .+..-+|.+|--....-+-+-..+.++.+-+. -| ....|+....+.
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FD----------is~C~NlKrVi~ 77 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FD----------ISKCGNLKRVIE 77 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-----------GGG-S-THHHHH
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh---cC----------chhhcchHHHHH
Confidence 345566666666666443 24455555554443333333333333333221 11 122344444444
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037911 507 LMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGF 586 (609)
Q Consensus 507 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 586 (609)
.+-.+ ..++..+...++.....|+-+.-.++...+.+ ...+++...-.+..+|.+.|+..++-++++++.++|+
T Consensus 78 C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 78 CYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 44333 23456667778888999999999999988875 3378888899999999999999999999999999986
Q ss_pred C
Q 037911 587 A 587 (609)
Q Consensus 587 ~ 587 (609)
+
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 4
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.38 Score=44.37 Aligned_cols=120 Identities=16% Similarity=0.046 Sum_probs=66.6
Q ss_pred HHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHH----H
Q 037911 135 ILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCN----F 210 (609)
Q Consensus 135 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----~ 210 (609)
.+..+|++.+|...++++++. .|.+.-.....-. ++.-.|+.+.-...+++++..- .++...|. .
T Consensus 112 i~~~~g~~h~a~~~wdklL~d---~PtDlla~kfsh~-------a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~Gm 180 (491)
T KOG2610|consen 112 ILWGRGKHHEAAIEWDKLLDD---YPTDLLAVKFSHD-------AHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGM 180 (491)
T ss_pred HhhccccccHHHHHHHHHHHh---Cchhhhhhhhhhh-------HHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHH
Confidence 344556666666666666654 3444433333333 5566666666666666665431 23332222 2
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 037911 211 LLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKI 266 (609)
Q Consensus 211 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 266 (609)
+.-++...|-+++|.+.-++..+.+ +.|...-..+.+.+-..|++.++.+++.+-
T Consensus 181 yaFgL~E~g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 181 YAFGLEECGIYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHhhHHHhccchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 2234455666777776666665543 345556666666666666666666665543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.29 Score=46.57 Aligned_cols=23 Identities=26% Similarity=0.250 Sum_probs=17.7
Q ss_pred HHHHHhCCChhHHHHHHHHHHHh
Q 037911 133 VHILAWNNKFSFAMKMLCELVEL 155 (609)
Q Consensus 133 ~~~~~~~~~~~~A~~~~~~~~~~ 155 (609)
.+.|.+.|+|..|...|+.++..
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~ 237 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF 237 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH
Confidence 45677888888888888887654
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.17 Score=41.98 Aligned_cols=48 Identities=13% Similarity=0.026 Sum_probs=19.6
Q ss_pred CChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHH
Q 037911 104 SDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELV 153 (609)
Q Consensus 104 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 153 (609)
|+++.|..+|+.+..- .+.++.-|..|+.++-..+++++|...|....
T Consensus 51 Gk~~eA~~~F~~L~~~--d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~ 98 (165)
T PRK15331 51 GRLDEAETFFRFLCIY--DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAF 98 (165)
T ss_pred CCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444421 11133333444444444444444444444433
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.69 E-value=1.9 Score=40.48 Aligned_cols=59 Identities=14% Similarity=0.187 Sum_probs=28.6
Q ss_pred hCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhC-CHHHHHHHHHHHHh
Q 037911 138 WNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVG-LIRESFKTFRKTLD 198 (609)
Q Consensus 138 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g-~~~~A~~~~~~~~~ 198 (609)
++|+++.|..++.++..... ..++.....+...+-..+......+ ++++|..++++..+
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~--~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~ 64 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLN--SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYD 64 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHh--cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 45666666666666654421 1112222222221111111445566 88888888777654
|
It is also involved in sporulation []. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.21 Score=39.89 Aligned_cols=46 Identities=20% Similarity=0.240 Sum_probs=21.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHH
Q 037911 447 VPSLEIYNELMESLCKCDSVADALLLKDEMVDR-NIKPSLSTYRALI 492 (609)
Q Consensus 447 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~li 492 (609)
.|+..+..+++.+|+..|++..|+++.+.+.+. ++..+..+|..|+
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll 95 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLL 95 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 344455555555555555555555555444422 3333444444444
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.41 Score=37.50 Aligned_cols=98 Identities=19% Similarity=0.151 Sum_probs=69.5
Q ss_pred HHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCC-CcHHhHHHHhhc
Q 037911 94 EISRVLLRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCP-HSVDVFQDLISC 172 (609)
Q Consensus 94 ~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~l~~~ 172 (609)
.+.+|.....++.+.|++.|..++.- .+..+..|+.-..++.-+|+.++|..-+++.++..++.. .....|..-..
T Consensus 47 El~~valaE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~- 123 (175)
T KOG4555|consen 47 ELKAIALAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGL- 123 (175)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHH-
Confidence 45566677778888999999888752 334677888888898888999999888888888733221 11112222222
Q ss_pred cccchhHHHHhCCHHHHHHHHHHHHhCC
Q 037911 173 TEDCNWAYVKVGLIRESFKTFRKTLDVG 200 (609)
Q Consensus 173 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 200 (609)
.|...|+.+.|..-|+..-+.|
T Consensus 124 ------lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 124 ------LYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred ------HHHHhCchHHHHHhHHHHHHhC
Confidence 6778888888888888887766
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.57 E-value=4.2 Score=44.58 Aligned_cols=110 Identities=18% Similarity=0.187 Sum_probs=64.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 037911 348 YNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQ 427 (609)
Q Consensus 348 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 427 (609)
|.+...-+.....+++|.-.|+..-+ ..-.+.+|...|+|.+|+.+..++...... -..+-..|+.-+..
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~de-~~~~a~~L~s~L~e 1011 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKDE-LVILAEELVSRLVE 1011 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHHH-HHHHHHHHHHHHHH
Confidence 33334444556677777666654422 233456777788888888877766432100 11122456677777
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037911 428 DNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDE 475 (609)
Q Consensus 428 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 475 (609)
.+++.+|.+++.+.... ....+..|++...|++|.++...
T Consensus 1012 ~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1012 QRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred cccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHh
Confidence 88888888887776432 12234456666677777665443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.57 E-value=1.1 Score=36.90 Aligned_cols=43 Identities=12% Similarity=0.124 Sum_probs=20.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 037911 386 IVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDN 429 (609)
Q Consensus 386 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 429 (609)
++..+.+.+.......+++.+...+. .+....+.++..|++.+
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~ 55 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD 55 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC
Confidence 34444444445555555555544432 34445555555555443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.5 Score=47.20 Aligned_cols=129 Identities=16% Similarity=0.122 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 037911 207 SCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYC 286 (609)
Q Consensus 207 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 286 (609)
..+.++..+-+.|..+.|+++-.+-. .-.....+.|+++.|.++.++. .+...|..|.....
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHH
Confidence 35556666666666666665433211 1223344556666665554432 24455666666666
Q ss_pred hcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 037911 287 KKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKS 366 (609)
Q Consensus 287 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 366 (609)
..|+++-|.+.|.+..+ |..|+-.|.-.|+.+.-.++.+....+| -++....++.-.|+.++..+
T Consensus 359 ~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~ 423 (443)
T PF04053_consen 359 RQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVD 423 (443)
T ss_dssp HTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHH
T ss_pred HcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHH
Confidence 66666666665554432 3344445555555555555555555443 13333334444455555555
Q ss_pred HH
Q 037911 367 LL 368 (609)
Q Consensus 367 ~~ 368 (609)
++
T Consensus 424 lL 425 (443)
T PF04053_consen 424 LL 425 (443)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.48 E-value=2.2 Score=39.96 Aligned_cols=164 Identities=15% Similarity=0.078 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhcCChHHH---HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037911 417 IYDYLIVALCQDNRPFAA---TSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALIC 493 (609)
Q Consensus 417 ~~~~ll~~~~~~~~~~~a---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 493 (609)
++..++.++...+..+.. ..+++.+... .+..+.++..-++.+.+.++.+++.+.+.+|+..-. -....+...+.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~-~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD-HSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc-cccchHHHHHH
Confidence 455555666665554433 3333444222 222344454555666667777777777777776421 12233444443
Q ss_pred HHh--cCCCHhHHHHHHHHHHHCCCCCCHH-HHH----HHHHHHHccCC------HHHHHHHHHHHHHcCC-CCChhcHH
Q 037911 494 CFC--GIGRSGEAVSLMDEMLESGMLPDSQ-ICR----VLINGYCMEKD------VNKAEALLGFFAKKFQ-IYDTESYN 559 (609)
Q Consensus 494 ~~~--~~g~~~~A~~~~~~~~~~~~~p~~~-~~~----~l~~~~~~~g~------~~~A~~~~~~~~~~~~-~~~~~~~~ 559 (609)
.+. .......|...+..++...+.|... ... ..+......++ ++....+++...+... +.+..+-.
T Consensus 164 ~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~ 243 (278)
T PF08631_consen 164 HIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAAS 243 (278)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 331 1233355666666666554555443 111 11111222222 4444444543332222 33333322
Q ss_pred HH-------HHHHHhcCCHHHHHHHHHHHH
Q 037911 560 AV-------FNMFAEDGDLSKLMELQKRFL 582 (609)
Q Consensus 560 ~l-------~~~~~~~g~~~~A~~~~~~m~ 582 (609)
++ +..+.+.+++++|.++|+-.+
T Consensus 244 a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 244 AIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 22 234667889999999998654
|
It is also involved in sporulation []. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.13 Score=46.00 Aligned_cols=34 Identities=24% Similarity=0.190 Sum_probs=22.4
Q ss_pred hHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCC
Q 037911 292 NDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGK 325 (609)
Q Consensus 292 ~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 325 (609)
+-+++++++|...|+.||..+-..|++++.+.+-
T Consensus 140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 3456667777777777776666666666666554
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.43 E-value=3.4 Score=41.75 Aligned_cols=393 Identities=12% Similarity=0.064 Sum_probs=184.4
Q ss_pred hHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCh
Q 037911 143 SFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLL-KLNCI 221 (609)
Q Consensus 143 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~ 221 (609)
+.++.+++.++.. .|.-...|..... .=.+.|..+++.++|++.+. |++.++..|...+..+. ..|+.
T Consensus 62 ~~~r~~y~~fL~k---yPl~~gyW~kfA~-------~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~ 130 (577)
T KOG1258|consen 62 DALREVYDIFLSK---YPLCYGYWKKFAD-------YEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDP 130 (577)
T ss_pred HHHHHHHHHHHhh---CccHHHHHHHHHH-------HHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCH
Confidence 4566666766644 4444555555544 45678888888888888876 56677777776665443 45777
Q ss_pred HHHHHHHHHHhhC-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh---c------CC
Q 037911 222 DQCWQVYEEMGRI-GIC-PNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCK---K------GR 290 (609)
Q Consensus 222 ~~a~~~~~~m~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~------g~ 290 (609)
+.....|+..... |.. .+...|...|..-..++++.....+++.+++. ....|+..-.-|.+ . ..
T Consensus 131 ~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~l~~~~~~~l~~ 206 (577)
T KOG1258|consen 131 ETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQLLNQNEEKILLS 206 (577)
T ss_pred HHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHHHhcCChhhhcC
Confidence 7777777777553 221 23445666666666677788888888887764 12223222222211 1 12
Q ss_pred HhHHHHHHHHHhhC----CccCCHhhHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 037911 291 LNDAFYLYRIMYRR----NVLPDLVTYTTLMNGLCK-EGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESK 365 (609)
Q Consensus 291 ~~~a~~~~~~~~~~----~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 365 (609)
.+++.++-...... ...+....+..-+..-.. .+..+++..+..+.. ...-.++...-...+..
T Consensus 207 ~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~-----------~~~~~~~~~s~~~~~kr 275 (577)
T KOG1258|consen 207 IDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIV-----------SIHEKVYQKSEEEEEKR 275 (577)
T ss_pred HHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHH-----------HHHHHHHHhhHhHHHHH
Confidence 23332222222110 000000111111100000 011111111111111 00111122222233333
Q ss_pred HHHHHHHHCC---C----ccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 037911 366 SLLYEMMGNG---I----YPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLL 438 (609)
Q Consensus 366 ~~~~~~~~~~---~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 438 (609)
..++.-++.- + .++..+|+..+..-.+.|+.+.+.-+++...--- ..-...|-..+.-....|+.+-+..++
T Consensus 276 ~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~ 354 (577)
T KOG1258|consen 276 WGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVL 354 (577)
T ss_pred HhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHH
Confidence 3333333221 1 2245667777777777777777777776654310 111223333333334446656555555
Q ss_pred HHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhcCCCHhHHH---HHHHHHH
Q 037911 439 ERIGQDGY--VPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLST-YRALICCFCGIGRSGEAV---SLMDEML 512 (609)
Q Consensus 439 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~li~~~~~~g~~~~A~---~~~~~~~ 512 (609)
....+-.. .|....+.+.+ .-..|+++.|..+++.+.+.- |+..- -..-+....+.|+.+.+. +++....
T Consensus 355 ~~~~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~ 430 (577)
T KOG1258|consen 355 ARACKIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIY 430 (577)
T ss_pred HhhhhhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhc
Confidence 54432222 23333333322 223467777777777776542 44322 112223344566666666 3333333
Q ss_pred HCCCCCCHHHHHHHHHH-----HHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcC
Q 037911 513 ESGMLPDSQICRVLING-----YCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDG 569 (609)
Q Consensus 513 ~~~~~p~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 569 (609)
... -+..+...+.-- +.-.++.+.|..++.++.+.. +++...|..+++.....+
T Consensus 431 ~~~--~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~-~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 431 EGK--ENNGILEKLYVKFARLRYKIREDADLARIILLEANDIL-PDCKVLYLELIRFELIQP 489 (577)
T ss_pred ccc--cCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcC-CccHHHHHHHHHHHHhCC
Confidence 211 122222222111 223467777777777776542 344456666666655444
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.36 E-value=3.7 Score=41.76 Aligned_cols=118 Identities=17% Similarity=0.082 Sum_probs=71.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCChHHHHHHHHHHHhC--CC-CCCHHHHHHHHHHHHhcCCHHH
Q 037911 393 EGRLLSALNLVVELQRFGVSISRDIYDYL-IVALCQDNRPFAATSLLERIGQD--GY-VPSLEIYNELMESLCKCDSVAD 468 (609)
Q Consensus 393 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~--~~-~~~~~~~~~l~~~~~~~g~~~~ 468 (609)
....+.|.+++..+.+. -|+...|... .+.+...|++++|...+++.... .. ......+-.+.-.+.-..+|++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 34566677777777665 3444444333 34555667777777777754321 11 1223445556666777899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHH-HHHhcCCCH-------hHHHHHHHHHHH
Q 037911 469 ALLLKDEMVDRNIKPSLSTYRALI-CCFCGIGRS-------GEAVSLMDEMLE 513 (609)
Q Consensus 469 A~~~~~~~~~~~~~p~~~~~~~li-~~~~~~g~~-------~~A~~~~~~~~~ 513 (609)
|.+.|..+.+.+- -....|..+. .++...|+. ++|.+++.++..
T Consensus 324 A~~~f~~L~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 9999999987542 2334444443 334566777 788888877654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.07 Score=33.38 Aligned_cols=41 Identities=12% Similarity=0.176 Sum_probs=34.0
Q ss_pred HhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHh
Q 037911 127 SNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLI 170 (609)
Q Consensus 127 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 170 (609)
..|..+...|.+.|++++|+++|+++++. .|.+...+..+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~---~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL---DPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcCCHHHHHHhh
Confidence 56888999999999999999999999987 566677665554
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.29 E-value=2.1 Score=38.45 Aligned_cols=58 Identities=12% Similarity=-0.002 Sum_probs=41.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCh----hcHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037911 525 VLINGYCMEKDVNKAEALLGFFAKKFQIYDT----ESYNAVFNMFAEDGDLSKLMELQKRFLRL 584 (609)
Q Consensus 525 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 584 (609)
.+.+.|.+.|.+..|..-++.+.+.. |+. ..+-.+..+|...|-.++|.+.-+-+..+
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y--~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENY--PDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcc--ccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 45677788888888888888888762 222 34556667788888888887777666544
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.82 Score=35.93 Aligned_cols=93 Identities=15% Similarity=0.125 Sum_probs=74.3
Q ss_pred HHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhC---CCCCCHHHHH
Q 037911 133 VHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDV---GFQPSIVSCN 209 (609)
Q Consensus 133 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~ 209 (609)
.-+++..|+.+.|++.|.+.+.. .|.....|+.-.. ++.-.|+.++|++-+++.++. .-+.--.+|-
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l---~P~raSayNNRAQ-------a~RLq~~~e~ALdDLn~AleLag~~trtacqa~v 119 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCL---APERASAYNNRAQ-------ALRLQGDDEEALDDLNKALELAGDQTRTACQAFV 119 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHh---cccchHhhccHHH-------HHHHcCChHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 45678889999999999999876 6677888888888 899999999999999988762 1455666777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCC
Q 037911 210 FLLNGLLKLNCIDQCWQVYEEMGRIG 235 (609)
Q Consensus 210 ~ll~~~~~~~~~~~a~~~~~~m~~~~ 235 (609)
.-...|...|+-+.|..=|+...+.|
T Consensus 120 QRg~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 120 QRGLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHHHHHHHhCchHHHHHhHHHHHHhC
Confidence 77777888888888888887776655
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.18 E-value=2.5 Score=38.74 Aligned_cols=142 Identities=12% Similarity=0.116 Sum_probs=82.0
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDK 258 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (609)
.....|++.+|...|....+.. +-+...--.+..+|...|+.+.|..++..+...--.........-+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 4677888888888888887754 334556666778888888888888888876543111111121223344444444444
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhC--CccCCHhhHHHHHHHHHhcC
Q 037911 259 VNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRR--NVLPDLVTYTTLMNGLCKEG 324 (609)
Q Consensus 259 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~ll~~~~~~~ 324 (609)
...+-...-.. +-|...-..+...+...|+.+.|++.+-.+..+ |.. |...-..++..+.-.|
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g 286 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence 44444444332 225555566666777777777777666555543 222 3344445555554444
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.79 Score=43.05 Aligned_cols=130 Identities=18% Similarity=0.278 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cC----ChHHHHHHHHHHhhCCC---CCCHHHHHHHHHHHHHcCC-
Q 037911 186 IRESFKTFRKTLDVGFQPSIVSCNFLLNGLLK--LN----CIDQCWQVYEEMGRIGI---CPNTHTFNILTHVFCKNGD- 255 (609)
Q Consensus 186 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~----~~~~a~~~~~~m~~~~~---~~~~~~~~~l~~~~~~~g~- 255 (609)
+++.+.+++.+.+.|+..+..+|-+..-.+.. .. ....|.++|+.|++... .++...+..|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45556778888888888887666553333332 22 25678889999987542 2445555555443 3333
Q ss_pred ---hHHHHHHHHHHHHcCCCCCHH--hHHHHHHHHHhcCC--HhHHHHHHHHHhhCCccCCHhhHHHHH
Q 037911 256 ---VDKVNGFLEKIEEEGFDPDLV--TYNTLISSYCKKGR--LNDAFYLYRIMYRRNVLPDLVTYTTLM 317 (609)
Q Consensus 256 ---~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~p~~~~~~~ll 317 (609)
.+.++.+|+.+.+.|+..+.. ....++........ ...+.++++.+.+.|+++....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 355666777777766654432 23333322221111 446667777777777766655555443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.06 E-value=1.7 Score=36.19 Aligned_cols=124 Identities=13% Similarity=0.125 Sum_probs=53.6
Q ss_pred HHHhCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHH-HHHHH--HHHHHHcCC
Q 037911 180 YVKVGLIRESFKTFRKTLDVGFQPSI-VSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTH-TFNIL--THVFCKNGD 255 (609)
Q Consensus 180 ~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~l--~~~~~~~g~ 255 (609)
..+.++.++|+..|..+.+.|..--+ ...-.......+.|+...|...|++.-...-.|-.. -...| .-.+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 44455555555555555444322211 122223334444555555555555544322122111 01111 112334455
Q ss_pred hHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhh
Q 037911 256 VDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYR 303 (609)
Q Consensus 256 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 303 (609)
++......+.+...+-+.....-..|.-+-.+.|++.+|.+.|..+..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 555555555554443333333444455555555555555555555554
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.05 E-value=3.2 Score=41.08 Aligned_cols=64 Identities=14% Similarity=0.028 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCHHhHHHHHHHHHhcCCHhHHHHHHHHHhh
Q 037911 240 THTFNILTHVFCKNGDVDKVNGFLEKIEEEGFD-PDLVTYNTLISSYCKKGRLNDAFYLYRIMYR 303 (609)
Q Consensus 240 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 303 (609)
..+-..+..++.+.|+.++|++.+.+|.+.... -+......|+.++...+.+.++..++.+..+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 444455666777788888888888888765322 1334667788888888888888888888654
|
The molecular function of this protein is uncertain. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.5 Score=45.05 Aligned_cols=137 Identities=9% Similarity=0.016 Sum_probs=73.9
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDK 258 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (609)
.|.+.|++..|...|++++..= . +.+.-+.++... .. ..-..++..|..++.+.+++.+
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l------------~-~~~~~~~ee~~~-~~-------~~k~~~~lNlA~c~lKl~~~~~ 275 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFL------------E-YRRSFDEEEQKK-AE-------ALKLACHLNLAACYLKLKEYKE 275 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHh------------h-ccccCCHHHHHH-HH-------HHHHHHhhHHHHHHHhhhhHHH
Confidence 7889999999999999876410 0 000000011111 00 1123344556666666666666
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHH-HHHHHHHHHH
Q 037911 259 VNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVR-EAHQLFHRMV 337 (609)
Q Consensus 259 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~-~a~~~~~~m~ 337 (609)
|++...+.+..+ ++|....-.-..++...|+++.|...|+++.+..+. |...-+.++.+.-+..... ...++|..|.
T Consensus 276 Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 276 AIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666666666554 345555555666666666777777777666665332 3333444444433333332 3355666665
Q ss_pred H
Q 037911 338 H 338 (609)
Q Consensus 338 ~ 338 (609)
.
T Consensus 354 ~ 354 (397)
T KOG0543|consen 354 A 354 (397)
T ss_pred h
Confidence 4
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.95 E-value=1.3 Score=41.54 Aligned_cols=165 Identities=12% Similarity=0.033 Sum_probs=88.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhh-CCCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-----CCCHHh
Q 037911 207 SCNFLLNGLLKLNCIDQCWQVYEEMGR-IGICP---NTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGF-----DPDLVT 277 (609)
Q Consensus 207 ~~~~ll~~~~~~~~~~~a~~~~~~m~~-~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~ 277 (609)
+|..+.+++-+.-++.+++.+-+.-.. .|..| -....-++..++...+.++++++.|+...+..- .....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 344444455444455555554443222 12222 112334456666677778888888877665311 112345
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHhh----CCccCCHh-hHH-----HHHHHHHhcCCHHHHHHHHHHHHH----CCCCC
Q 037911 278 YNTLISSYCKKGRLNDAFYLYRIMYR----RNVLPDLV-TYT-----TLMNGLCKEGKVREAHQLFHRMVH----RGLSP 343 (609)
Q Consensus 278 ~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~p~~~-~~~-----~ll~~~~~~~~~~~a~~~~~~m~~----~g~~p 343 (609)
+-.|...|....|+++|+-+..+..+ .++. |.. -|. .|.-++...|...+|.+.-++..+ .|-.+
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 77777788888888887766555443 2222 211 122 233345566666666666665543 23221
Q ss_pred -CHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 037911 344 -DIVSYNTLIFAYCKEGKMQESKSLLYEMM 372 (609)
Q Consensus 344 -~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 372 (609)
-......+.+.|...|+.+.|+.-|+...
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 12334556667777888888777776644
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.41 Score=43.01 Aligned_cols=101 Identities=15% Similarity=0.127 Sum_probs=60.9
Q ss_pred hCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 037911 183 VGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGF 262 (609)
Q Consensus 183 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 262 (609)
.+.++---..++.|.+.|+..|..+|+.|++.+-+..- .|... +....--|= .+-+-++++
T Consensus 85 R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~nv-fQ~~F~HYP--~QQ~C~I~v 145 (406)
T KOG3941|consen 85 RTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQNV-FQKVFLHYP--QQQNCAIKV 145 (406)
T ss_pred cchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccHHH-HHHHHhhCc--hhhhHHHHH
Confidence 34455555667888999999999999999987654321 11111 111111111 223456777
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHhcCC-HhHHHHHHHHHh
Q 037911 263 LEKIEEEGFDPDLVTYNTLISSYCKKGR-LNDAFYLYRIMY 302 (609)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~ 302 (609)
+++|...|+.||..+-..++.++.+.+. ..+..+++-.|.
T Consensus 146 LeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 146 LEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 8888888888888888888888777665 333444444443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.87 E-value=3.1 Score=38.70 Aligned_cols=154 Identities=10% Similarity=-0.019 Sum_probs=100.6
Q ss_pred HHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHH----HHHHHHHHHcCC
Q 037911 180 YVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTF----NILTHVFCKNGD 255 (609)
Q Consensus 180 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~----~~l~~~~~~~g~ 255 (609)
....|+..+|-..++++++. +|.|..+++..=+++.-.|+...-...++++.... .+|...| ....-++...|-
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhcc
Confidence 44677888888888888773 57788888888888888888888888888876541 2444333 233334556788
Q ss_pred hHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCC---HhhHHHHHHHHHhcCCHHHHHHH
Q 037911 256 VDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPD---LVTYTTLMNGLCKEGKVREAHQL 332 (609)
Q Consensus 256 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~ 332 (609)
+++|++.-++..+.+ +.|...-.++...+-.+|++.++.+++.+-...=-.-+ ...|=...-.+...+.++.|+.+
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 888888888877765 44677777777788888888888887765543200000 01111122234455777888877
Q ss_pred HHHH
Q 037911 333 FHRM 336 (609)
Q Consensus 333 ~~~m 336 (609)
|+.-
T Consensus 270 yD~e 273 (491)
T KOG2610|consen 270 YDRE 273 (491)
T ss_pred HHHH
Confidence 7653
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.77 E-value=2.2 Score=42.02 Aligned_cols=155 Identities=10% Similarity=0.016 Sum_probs=98.3
Q ss_pred hhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchh-HH-HHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 037911 142 FSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNW-AY-VKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLN 219 (609)
Q Consensus 142 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 219 (609)
.+.|..+|.+++......|.....|..+..|+..... .+ .......+|.+..++..+.+ +.|..+...+..++.-.+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 4568888999885433455666667666553211100 01 13445677888888888876 667777777777777778
Q ss_pred ChHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCHHhHHHHHHHHHhcCCHhHHHHH
Q 037911 220 CIDQCWQVYEEMGRIGICPN-THTFNILTHVFCKNGDVDKVNGFLEKIEEEGF-DPDLVTYNTLISSYCKKGRLNDAFYL 297 (609)
Q Consensus 220 ~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~ 297 (609)
+++.|...|++.... .|| ..+|......+.-.|+.++|.+.+++..+... +.........++.|+.. .++.|+++
T Consensus 353 ~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~ 429 (458)
T PRK11906 353 QAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKL 429 (458)
T ss_pred chhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHH
Confidence 899999999988774 354 44555555556678888888888888665421 11223334444556554 45666666
Q ss_pred HHH
Q 037911 298 YRI 300 (609)
Q Consensus 298 ~~~ 300 (609)
|-+
T Consensus 430 ~~~ 432 (458)
T PRK11906 430 YYK 432 (458)
T ss_pred Hhh
Confidence 644
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.64 E-value=2.2 Score=35.52 Aligned_cols=151 Identities=13% Similarity=0.155 Sum_probs=101.9
Q ss_pred hHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHHcCCh
Q 037911 178 WAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNT-HTFNILTHVFCKNGDV 256 (609)
Q Consensus 178 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~g~~ 256 (609)
+.|...++...+=..|...++ +.+.+..++|+.-|.++.+.|...-. -....+.......|+.
T Consensus 47 y~yw~~s~as~sgd~flaAL~----------------lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdt 110 (221)
T COG4649 47 YTYWQTSRASKSGDAFLAALK----------------LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDT 110 (221)
T ss_pred eehhcccccccchHHHHHHHH----------------HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccH
Confidence 345555555555444444433 45678899999999999887643222 2222344557788999
Q ss_pred HHHHHHHHHHHHcCCCCCHHh-HHH--HHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 037911 257 DKVNGFLEKIEEEGFDPDLVT-YNT--LISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLF 333 (609)
Q Consensus 257 ~~a~~~~~~~~~~~~~~~~~~-~~~--li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 333 (609)
..|+..|+++-.....|-+.- ... -...+..+|.+++.....+.+-..+-..-...-..|.-+..+.|++.+|.++|
T Consensus 111 a~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F 190 (221)
T COG4649 111 AAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWF 190 (221)
T ss_pred HHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHH
Confidence 999999999987644443321 111 12346678999999988888776554334455567777888999999999999
Q ss_pred HHHHHCCCCCC
Q 037911 334 HRMVHRGLSPD 344 (609)
Q Consensus 334 ~~m~~~g~~p~ 344 (609)
.++......|.
T Consensus 191 ~qia~Da~apr 201 (221)
T COG4649 191 VQIANDAQAPR 201 (221)
T ss_pred HHHHccccCcH
Confidence 99987543443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.61 E-value=3.3 Score=37.27 Aligned_cols=221 Identities=17% Similarity=0.082 Sum_probs=94.5
Q ss_pred CCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCccCHHHHHHHHHHHHccCCHHHHHH
Q 037911 324 GKVREAHQLFHRMVHRGLS-PDIVSYNTLIFAYCKEGKMQESKSLLYEMMGN-GIYPDTFTCQIIVQGYGKEGRLLSALN 401 (609)
Q Consensus 324 ~~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~ 401 (609)
+....+...+......... .....+......+...+++..+...+...... ........+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444444444443211 02344445555555555555555555555431 112233344444444555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 037911 402 LVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNI 481 (609)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 481 (609)
.+.......... ......... . .+...|+++.|...+.+......
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~---------------------------------~-~~~~~~~~~~a~~~~~~~~~~~~ 161 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLAL---------------------------------G-ALYELGDYEEALELYEKALELDP 161 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHH---------------------------------H-HHHHcCCHHHHHHHHHHHHhcCC
Confidence 555554432221 111111111 0 34444555555555555433110
Q ss_pred --CCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-hhc
Q 037911 482 --KPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLP-DSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYD-TES 557 (609)
Q Consensus 482 --~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~ 557 (609)
......+......+...++.+++...+.++.... .. ....+..+...+...++++.|...+...... .++ ...
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~ 238 (291)
T COG0457 162 ELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEA 238 (291)
T ss_pred CccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHH
Confidence 0111222222222344455555555555555421 11 2344455555555555555555555555543 222 222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 037911 558 YNAVFNMFAEDGDLSKLMELQKRFL 582 (609)
Q Consensus 558 ~~~l~~~~~~~g~~~~A~~~~~~m~ 582 (609)
+..+...+...|..+++...+.+..
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 239 LYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred HhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333333334445555555555554
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.52 E-value=2.2 Score=34.99 Aligned_cols=34 Identities=18% Similarity=0.227 Sum_probs=13.4
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 037911 252 KNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYC 286 (609)
Q Consensus 252 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 286 (609)
..+.......+++.+...+ ..+....+.++..|+
T Consensus 19 ~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~ 52 (140)
T smart00299 19 KRNLLEELIPYLESALKLN-SENPALQTKLIELYA 52 (140)
T ss_pred hCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHH
Confidence 3334444444444443333 123333444444444
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.45 E-value=3 Score=41.03 Aligned_cols=81 Identities=11% Similarity=-0.041 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHH
Q 037911 466 VADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPD-SQICRVLINGYCMEKDVNKAEALLG 544 (609)
Q Consensus 466 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 544 (609)
..+|.++-+..++.+. -|..+...+..++...++++.|..+|+++... .|| ..+|-.....+.-.|+.++|.+.++
T Consensus 320 ~~~a~~~A~rAveld~-~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 320 AQKALELLDYVSDITT-VDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3444555555555432 34455555555555555566666666665532 333 2334444444555566666666666
Q ss_pred HHHHc
Q 037911 545 FFAKK 549 (609)
Q Consensus 545 ~~~~~ 549 (609)
+..+.
T Consensus 397 ~alrL 401 (458)
T PRK11906 397 KSLQL 401 (458)
T ss_pred HHhcc
Confidence 55433
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.40 E-value=4.6 Score=38.04 Aligned_cols=129 Identities=13% Similarity=0.192 Sum_probs=65.5
Q ss_pred HhHHHHHHHHHhhCCccCCHhhHHHHHHHHHh--cC----CHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHcCC-
Q 037911 291 LNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCK--EG----KVREAHQLFHRMVHRGL---SPDIVSYNTLIFAYCKEGK- 360 (609)
Q Consensus 291 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~--~~----~~~~a~~~~~~m~~~g~---~p~~~~~~~li~~~~~~g~- 360 (609)
+++.+.+++.|.+.|..-+..+|-+..-.... .. ....|..+|+.|++... .++..++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44455666677777766565555443322222 11 24567777777776521 2334445444433 2222
Q ss_pred ---hHHHHHHHHHHHHCCCccCH--HHHHHHHHHHHccCC--HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 037911 361 ---MQESKSLLYEMMGNGIYPDT--FTCQIIVQGYGKEGR--LLSALNLVVELQRFGVSISRDIYDYL 421 (609)
Q Consensus 361 ---~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~l 421 (609)
.+.+..+|+.+.+.|...+- .....++........ ..++.++++.+.+.|+++....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 34556666666665554322 223333332222222 33566677777777766665555443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.37 E-value=4.7 Score=38.04 Aligned_cols=157 Identities=11% Similarity=0.032 Sum_probs=67.6
Q ss_pred HHHcCChHHHHHHHHHHHHcC--CCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhh--CCcc---CCHhhHHHHHHHHHh
Q 037911 250 FCKNGDVDKVNGFLEKIEEEG--FDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYR--RNVL---PDLVTYTTLMNGLCK 322 (609)
Q Consensus 250 ~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~---p~~~~~~~ll~~~~~ 322 (609)
+....+.++|+..+.+...+- ..-...+|..+..+.++.|.+++++..--...+ .... .-...|..+.+++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666554430 011233455555666666666555433211110 0000 011233334444444
Q ss_pred cCCHHHHHHHHHHHHHC-CCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-----CccCHHHHHHHHHHHHcc
Q 037911 323 EGKVREAHQLFHRMVHR-GLSPD---IVSYNTLIFAYCKEGKMQESKSLLYEMMGNG-----IYPDTFTCQIIVQGYGKE 393 (609)
Q Consensus 323 ~~~~~~a~~~~~~m~~~-g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~ 393 (609)
..++.+++.+-+.-... |..|. -....++..++...+.++++++.|+...+-- .......+..|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 44444444443333222 22221 1122234444445555666666665554321 111234455555556666
Q ss_pred CCHHHHHHHHHHH
Q 037911 394 GRLLSALNLVVEL 406 (609)
Q Consensus 394 ~~~~~A~~~~~~~ 406 (609)
.|+++|+-+..+.
T Consensus 176 ~D~~Kal~f~~kA 188 (518)
T KOG1941|consen 176 KDYEKALFFPCKA 188 (518)
T ss_pred HhhhHHhhhhHhH
Confidence 6666655544443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.35 E-value=4.2 Score=37.38 Aligned_cols=49 Identities=14% Similarity=0.144 Sum_probs=20.7
Q ss_pred hcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037911 287 KKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRM 336 (609)
Q Consensus 287 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 336 (609)
..|++.+|..+|+........ +...-..++.+|...|+.+.|..++..+
T Consensus 146 ~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred hccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 344444444444444433222 2233333444444444444444444443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.08 E-value=2.4 Score=35.16 Aligned_cols=70 Identities=17% Similarity=0.078 Sum_probs=47.2
Q ss_pred HhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 037911 137 AWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLL 216 (609)
Q Consensus 137 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 216 (609)
.+.++.+++..+++.+....+ ..+...++... .++..|++.+|+.+|+++.+.+ |.......|+..|.
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP-~~~e~~~~~~~---------l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL 88 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRP-EFPELDLFDGW---------LHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCL 88 (160)
T ss_pred HccCChHHHHHHHHHHHHhCC-CchHHHHHHHH---------HHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHH
Confidence 456788888888888887633 33455556555 4688999999999999987643 44444455555554
Q ss_pred hc
Q 037911 217 KL 218 (609)
Q Consensus 217 ~~ 218 (609)
..
T Consensus 89 ~~ 90 (160)
T PF09613_consen 89 YA 90 (160)
T ss_pred HH
Confidence 43
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.03 E-value=7 Score=38.79 Aligned_cols=63 Identities=19% Similarity=0.157 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037911 311 VTYTTLMNGLCKEGKVREAHQLFHRMVHRG-LSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMG 373 (609)
Q Consensus 311 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 373 (609)
.+-..+..++-+.|+.++|.+.|++|.+.. ..-+..+...|+.++...+.+.++..++.+-.+
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 333445556666777777777777776532 111234556677777777777777777766543
|
The molecular function of this protein is uncertain. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.22 Score=31.12 Aligned_cols=28 Identities=21% Similarity=0.282 Sum_probs=15.5
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037911 557 SYNAVFNMFAEDGDLSKLMELQKRFLRL 584 (609)
Q Consensus 557 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 584 (609)
++..+...|...|++++|+++|+++++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445555555555555555555555543
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.33 E-value=4.3 Score=34.15 Aligned_cols=24 Identities=8% Similarity=0.014 Sum_probs=9.8
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCC
Q 037911 197 LDVGFQPSIVSCNFLLNGLLKLNC 220 (609)
Q Consensus 197 ~~~~~~~~~~~~~~ll~~~~~~~~ 220 (609)
.+.+++|+...+..+++.+.+.|+
T Consensus 21 ~~~~i~~~~~L~~lli~lLi~~~~ 44 (167)
T PF07035_consen 21 NQHNIPVQHELYELLIDLLIRNGQ 44 (167)
T ss_pred HHcCCCCCHHHHHHHHHHHHHcCC
Confidence 333344444444444444444443
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.25 E-value=11 Score=38.39 Aligned_cols=397 Identities=11% Similarity=0.005 Sum_probs=212.7
Q ss_pred hHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCH
Q 037911 107 VSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLI 186 (609)
Q Consensus 107 ~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~ 186 (609)
..+...++..... ++---.-|...+..=.+.|..+.+.++|++.+.. .|.+.+.+...... .....|+.
T Consensus 62 ~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a---ip~SvdlW~~Y~~f------~~n~~~d~ 130 (577)
T KOG1258|consen 62 DALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA---IPLSVDLWLSYLAF------LKNNNGDP 130 (577)
T ss_pred HHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh---hhhHHHHHHHHHHH------HhccCCCH
Confidence 3444444444432 2333345556666778889999999999998854 66777777766642 33467788
Q ss_pred HHHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH---HHc------CC
Q 037911 187 RESFKTFRKTLDV-GF-QPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVF---CKN------GD 255 (609)
Q Consensus 187 ~~A~~~~~~~~~~-~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~---~~~------g~ 255 (609)
+...+.|+.++.. |. -.+...|...+..-...+++.....+|++..+. | ...|+....-| .+. ..
T Consensus 131 ~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei---P-~~~~~~~f~~f~~~l~~~~~~~l~~ 206 (577)
T KOG1258|consen 131 ETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI---P-LHQLNRHFDRFKQLLNQNEEKILLS 206 (577)
T ss_pred HHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh---h-hhHhHHHHHHHHHHHhcCChhhhcC
Confidence 8888888888762 21 134557888888888889999999999999873 2 22222222222 111 22
Q ss_pred hHHHHHHHHHHHHc---C-CCCCHHhHHHHHHHHHh-cCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHH
Q 037911 256 VDKVNGFLEKIEEE---G-FDPDLVTYNTLISSYCK-KGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAH 330 (609)
Q Consensus 256 ~~~a~~~~~~~~~~---~-~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 330 (609)
.+++.++-....+. + ..+....+..-+.--.. .+..+++.....+... ..-..+-......+..
T Consensus 207 ~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~-----------~~~~~~~~s~~~~~kr 275 (577)
T KOG1258|consen 207 IDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVS-----------IHEKVYQKSEEEEEKR 275 (577)
T ss_pred HHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHH-----------HHHHHHHhhHhHHHHH
Confidence 33333333222211 0 00011111111110000 0111111111111110 0001111222233333
Q ss_pred HHHHHHHHCC---C----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHH
Q 037911 331 QLFHRMVHRG---L----SPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLV 403 (609)
Q Consensus 331 ~~~~~m~~~g---~----~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 403 (609)
..|+.-.++- + .++..+|..-+.--...|+.+.+.-+|+...-- +..=...|-..+.-....|+.+-|-.++
T Consensus 276 ~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~ 354 (577)
T KOG1258|consen 276 WGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVL 354 (577)
T ss_pred HhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHH
Confidence 3344433321 1 234567777777788889998888888876532 1111223444444444458888888887
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH---HHHHHHHHCC
Q 037911 404 VELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADAL---LLKDEMVDRN 480 (609)
Q Consensus 404 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~ 480 (609)
....+...+-.+.+--.-....-..|+...|..+++.+...- +.-...-..-+....+.|+.+.+. .++....+..
T Consensus 355 ~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~ 433 (577)
T KOG1258|consen 355 ARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK 433 (577)
T ss_pred HhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc
Confidence 776665544333333333333445678889999998886553 222223333345566778888877 3333333221
Q ss_pred CCCCHHHHHHHHH-----HHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 037911 481 IKPSLSTYRALIC-----CFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEK 534 (609)
Q Consensus 481 ~~p~~~~~~~li~-----~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 534 (609)
-+......+.- .+.-.++.+.|..++.++.+. ++++...|..++..+...+
T Consensus 434 --~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 434 --ENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred --cCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 12222222221 233468889999999999874 5667777888877776665
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.01 E-value=0.21 Score=29.52 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=20.9
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037911 557 SYNAVFNMFAEDGDLSKLMELQKRFL 582 (609)
Q Consensus 557 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 582 (609)
+|..|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36778888999999999999998865
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.00 E-value=1.1 Score=41.11 Aligned_cols=77 Identities=13% Similarity=0.126 Sum_probs=48.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCChhhHHHH
Q 037911 522 ICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLR-----LGFAPNNLTCKYM 596 (609)
Q Consensus 522 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~l 596 (609)
++..++..+...|+++.+.+.++.+.... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|-..+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 44555666666666666666666666543 33556666677777777777777666666543 4666666665555
Q ss_pred HHH
Q 037911 597 IHS 599 (609)
Q Consensus 597 l~~ 599 (609)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 544
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.83 E-value=1.8 Score=37.23 Aligned_cols=63 Identities=14% Similarity=0.157 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhcCCCHhHHHHHHHHHHH
Q 037911 451 EIYNELMESLCKCDSVADALLLKDEMVDRNIKPSL--STYRALICCFCGIGRSGEAVSLMDEMLE 513 (609)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~ 513 (609)
..+..+...|++.|+.++|.+.|.++.+....+.. ..+-.+|......+++..+...+.++..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45667777788888888888888887766443433 3455666666777777777777766654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.81 E-value=11 Score=37.39 Aligned_cols=427 Identities=9% Similarity=0.063 Sum_probs=207.5
Q ss_pred hHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCH
Q 037911 107 VSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLI 186 (609)
Q Consensus 107 ~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~ 186 (609)
..-+.+|+.+.. .+++|+..|..-+.-+-+.+.+.+...+|.+++.. +|.+++++..... |-|-..-.+
T Consensus 88 ~rIv~lyr~at~--rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~---Hp~~~dLWI~aA~------wefe~n~ni 156 (568)
T KOG2396|consen 88 NRIVFLYRRATN--RFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAK---HPNNPDLWIYAAK------WEFEINLNI 156 (568)
T ss_pred HHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHh---CCCCchhHHhhhh------hHHhhccch
Confidence 355667777765 46779999999998888888899999999999976 5666666654433 245566668
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHH---------HHHHH------HHHH
Q 037911 187 RESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHT---------FNILT------HVFC 251 (609)
Q Consensus 187 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---------~~~l~------~~~~ 251 (609)
+.|..+|.+.++.. +.++..|-...+.-. ..+..+..+=...|...+..+ +.... .+..
T Consensus 157 ~saRalflrgLR~n-pdsp~Lw~eyfrmEL-----~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~ 230 (568)
T KOG2396|consen 157 ESARALFLRGLRFN-PDSPKLWKEYFRMEL-----MYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAV 230 (568)
T ss_pred HHHHHHHHHHhhcC-CCChHHHHHHHHHHH-----HHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcch
Confidence 99999998888754 334444443333211 011111111111111111110 00000 0000
Q ss_pred Hc---------CChHHHH-HHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHH
Q 037911 252 KN---------GDVDKVN-GFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLC 321 (609)
Q Consensus 252 ~~---------g~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~ 321 (609)
+. ....+.. .+.+.+.. +.+-++.++.. .|.+.++-.......+ +...-.+..
T Consensus 231 k~~e~~~~~~~d~~kel~k~i~d~~~~-~~~~np~~~~~------------laqr~l~i~~~tdl~~----~~~~~~~~~ 293 (568)
T KOG2396|consen 231 KSVELSVAEKFDFLKELQKNIIDDLQS-KAPDNPLLWDD------------LAQRELEILSQTDLQH----TDNQAKAVE 293 (568)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHhc-cCCCCCccHHH------------HHHHHHHHHHHhhccc----hhhhhhchh
Confidence 00 0000000 01111111 11112222221 1222222222111110 001111111
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC------ChHHHHHHHHHHHHC-CCcc-CHHHHHHHHHHHHcc
Q 037911 322 KEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEG------KMQESKSLLYEMMGN-GIYP-DTFTCQIIVQGYGKE 393 (609)
Q Consensus 322 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g------~~~~A~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~ 393 (609)
-.-+.+....+|++..+. .|+...++..|..|...- .+.....+++...+. +..+ ....|..+.-.++..
T Consensus 294 ~~~k~s~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~ 371 (568)
T KOG2396|consen 294 VGSKESRCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTL 371 (568)
T ss_pred cchhHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhcc
Confidence 111223334666666653 455666666666654322 233444555554443 2222 234455555555555
Q ss_pred CCHHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH----HHHHhCCCCCCHHHHHHHHHHHHhcCC-HH
Q 037911 394 GRLLSA-LNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLL----ERIGQDGYVPSLEIYNELMESLCKCDS-VA 467 (609)
Q Consensus 394 ~~~~~A-~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~ 467 (609)
....++ ..+..+. +.-+...+-.-+....+... +..-.+ ..+...-..+....|+... .|+ ..
T Consensus 372 ~~~r~~a~~l~~e~----f~~s~k~~~~kl~~~~~s~s--D~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~ 440 (568)
T KOG2396|consen 372 NEAREVAVKLTTEL----FRDSGKMWQLKLQVLIESKS--DFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQ 440 (568)
T ss_pred chHhHHHHHhhHHH----hcchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchh
Confidence 443332 2222222 23344444444444442221 112222 2222221223333344333 122 22
Q ss_pred HHH--HHHHHHHHCCCCCCHHHH-HHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc--cCCHHHHHHH
Q 037911 468 DAL--LLKDEMVDRNIKPSLSTY-RALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCM--EKDVNKAEAL 542 (609)
Q Consensus 468 ~A~--~~~~~~~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~g~~~~A~~~ 542 (609)
... .++...... ..|+..++ +.+++.+.+.|-..+|...+..+.... +|+...|..++..-.. .-+..-++++
T Consensus 441 ~~~~~~Ii~a~~s~-~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~ 518 (568)
T KOG2396|consen 441 EDTLDLIISALLSV-IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCNLANIREY 518 (568)
T ss_pred HHHHHHHHHHHHHh-cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcCchHHHHH
Confidence 111 222222332 23666554 456677778888999999999988643 5566666666543221 2237788889
Q ss_pred HHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037911 543 LGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLR 583 (609)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 583 (609)
++.+....+ -|+..|...+..-...|..+.+-.++.++++
T Consensus 519 yd~a~~~fg-~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 519 YDRALREFG-ADSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHHhC-CChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 998887765 7888888877777788988888888776654
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.77 E-value=1.3 Score=40.78 Aligned_cols=70 Identities=11% Similarity=0.219 Sum_probs=43.2
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh-----CCCCCCHHHHHHHHHH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGR-----IGICPNTHTFNILTHV 249 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~~~~~l~~~ 249 (609)
.+...|+++.+.+.++++.... +-+...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+.......
T Consensus 162 ~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~~~ 236 (280)
T COG3629 162 ALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYEEI 236 (280)
T ss_pred HHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHH
Confidence 5566666666666666666654 55666666666666666666666666665543 4666666665555554
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=92.72 E-value=5.4 Score=33.60 Aligned_cols=136 Identities=16% Similarity=0.174 Sum_probs=88.4
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhC
Q 037911 225 WQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRR 304 (609)
Q Consensus 225 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 304 (609)
.+.++.+.+.+++|+...+..++..+.+.|++.....++ ..++-+|.......+-.+.. ....+.++=-+|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll----q~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL----QYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----hhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 455666677889999999999999999999976655544 44555665555544433322 233344443344332
Q ss_pred CccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 037911 305 NVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGN 374 (609)
Q Consensus 305 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 374 (609)
=...+..++..+...|++-+|.++.+..... +......++.+..+.+|...-..+++-..+.
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 0113556778889999999999999876433 2233355777877888877666666665554
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=92.66 E-value=16 Score=38.87 Aligned_cols=165 Identities=16% Similarity=0.165 Sum_probs=104.3
Q ss_pred HHHHHHHhcCCChhHHHHHHHHhhhcCCCCCC-----HHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCC--CcHHhH
Q 037911 94 EISRVLLRCQSDSVSALTFFNWVKNDLEIKPT-----SSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCP--HSVDVF 166 (609)
Q Consensus 94 ~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~ 166 (609)
.+..+|.....+.+.|...+..+...... ++ ..+...+++++.+.+... |...+++.++.....+ .....|
T Consensus 64 ~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~f 141 (608)
T PF10345_consen 64 RLASILLEETENLDLAETYLEKAILLCER-HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAF 141 (608)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHH
Confidence 45567777788999999999988653222 32 234457788888887777 9999999988754422 223334
Q ss_pred HHH-hhccccchhHHHHhCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHH--hcCChHHHHHHHHHHhhCC-----
Q 037911 167 QDL-ISCTEDCNWAYVKVGLIRESFKTFRKTLDVG---FQPSIVSCNFLLNGLL--KLNCIDQCWQVYEEMGRIG----- 235 (609)
Q Consensus 167 ~~l-~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~m~~~~----- 235 (609)
.-+ +. .+...+++..|++.++.+...- ..|.+.++-.++.++. +.+..+++.+..+++....
T Consensus 142 rll~~~-------l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~ 214 (608)
T PF10345_consen 142 RLLKIQ-------LALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQL 214 (608)
T ss_pred HHHHHH-------HHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhccc
Confidence 333 21 2223379999999999887632 2455555555555544 4565677777777663221
Q ss_pred ----CCCCHHHHHHHHHHHH--HcCChHHHHHHHHHHH
Q 037911 236 ----ICPNTHTFNILTHVFC--KNGDVDKVNGFLEKIE 267 (609)
Q Consensus 236 ----~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~ 267 (609)
-.|-..+|..+++.++ ..|+++.+...++++.
T Consensus 215 ~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 215 DPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1244567777777655 4577777776666554
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=92.37 E-value=8.5 Score=35.06 Aligned_cols=116 Identities=16% Similarity=0.169 Sum_probs=68.9
Q ss_pred CChhHHHHHHHHhhhcCCC-----CCC------HHhHHHH-HHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhh
Q 037911 104 SDSVSALTFFNWVKNDLEI-----KPT------SSNYCLI-VHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLIS 171 (609)
Q Consensus 104 ~~~~~A~~~f~~~~~~~~~-----~~~------~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 171 (609)
.|+..|++..+...+.... .+. -.+.+.+ |++++..|+|.++....-+.-+.....|+. +...=|-
T Consensus 49 rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCIL 126 (309)
T PF07163_consen 49 RDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCIL 126 (309)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHH
Confidence 3677777777666543211 111 1233333 888999999998887765555432233333 2322222
Q ss_pred ccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-----HhcCChHHHHHHH
Q 037911 172 CTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGL-----LKLNCIDQCWQVY 228 (609)
Q Consensus 172 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~-----~~~~~~~~a~~~~ 228 (609)
.|.+.|....+.++-+......-.-+...|..++..| .-.|.+++|+++.
T Consensus 127 -------LysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 127 -------LYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred -------HHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 6889999998888888887643333444465555444 4457777777766
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.37 E-value=31 Score=41.50 Aligned_cols=318 Identities=10% Similarity=0.020 Sum_probs=166.0
Q ss_pred HHHHHHHhcCCChhHHHHHHHHhhh-cCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhc
Q 037911 94 EISRVLLRCQSDSVSALTFFNWVKN-DLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISC 172 (609)
Q Consensus 94 ~~~~~l~~~~~~~~~A~~~f~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 172 (609)
.++++....-+.+..|+-.++.-.. .........-|..+-..|+..+++|....+..... .+..++..++
T Consensus 1387 ~tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-------a~~sl~~qil-- 1457 (2382)
T KOG0890|consen 1387 DTLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF-------ADPSLYQQIL-- 1457 (2382)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh-------cCccHHHHHH--
Confidence 3444433334578888888876311 11111233444455559999999998888766421 1334455555
Q ss_pred cccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHH-HHHHHHH
Q 037911 173 TEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFN-ILTHVFC 251 (609)
Q Consensus 173 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~l~~~~~ 251 (609)
.....|++++|...|+++.+.+ ++....++-++......|.++.+.-..+-..... .+....++ .=+.+-.
T Consensus 1458 ------~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW 1529 (2382)
T KOG0890|consen 1458 ------EHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAW 1529 (2382)
T ss_pred ------HHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHh
Confidence 4778999999999999999876 4557788888888888888888888666655432 23333333 3344456
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHhHHHH--HHHHHhc--CCHhHHHHHHHHHhhCCccC---------CHhhHHHHHH
Q 037911 252 KNGDVDKVNGFLEKIEEEGFDPDLVTYNTL--ISSYCKK--GRLNDAFYLYRIMYRRNVLP---------DLVTYTTLMN 318 (609)
Q Consensus 252 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l--i~~~~~~--g~~~~a~~~~~~~~~~~~~p---------~~~~~~~ll~ 318 (609)
+.++++...+.+. .. +..+|... .....+. .+.-.-.+..+.+.+.-+.| -...|..+++
T Consensus 1530 ~l~qwD~~e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~k 1602 (2382)
T KOG0890|consen 1530 RLSQWDLLESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMK 1602 (2382)
T ss_pred hhcchhhhhhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHH
Confidence 7788887777665 11 22333332 2222221 12111112222222211110 0123333333
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHHcCChHHHHHHHH-HHHHC----CCc-cCHHHHHHH
Q 037911 319 GLCKEGKVREAHQLFHRMVHRGLSPD------IVSYNTLIFAYCKEGKMQESKSLLY-EMMGN----GIY-PDTFTCQII 386 (609)
Q Consensus 319 ~~~~~~~~~~a~~~~~~m~~~g~~p~------~~~~~~li~~~~~~g~~~~A~~~~~-~~~~~----~~~-~~~~~~~~l 386 (609)
.+.-.. -....+... +..++ ..-|..-+..-....+..+-+--++ .+... +.. --..+|...
T Consensus 1603 LH~l~e----l~~~~~~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqs 1676 (2382)
T KOG0890|consen 1603 LHLLLE----LENSIEELK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQS 1676 (2382)
T ss_pred HHHHHH----HHHHHHHhh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHH
Confidence 322111 111111111 11111 1112111111111111111111111 11111 111 123567777
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037911 387 VQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQD 444 (609)
Q Consensus 387 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 444 (609)
.+...++|+++.|...+-...+.+ -+..+-..+..+...|+...|+.++++....
T Consensus 1677 AriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1677 ARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 777778888888888777776665 3456666777788888888888888877543
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.36 E-value=7.9 Score=34.64 Aligned_cols=120 Identities=19% Similarity=0.109 Sum_probs=87.8
Q ss_pred cCCHhHHHHHHHHHhhCCccC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCChHHHH
Q 037911 288 KGRLNDAFYLYRIMYRRNVLP-DLVTYTTLMNGLCKEGKVREAHQLFHRMVHR-GLSPDIVSYNTLIFAYCKEGKMQESK 365 (609)
Q Consensus 288 ~g~~~~a~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~ 365 (609)
.+....+...+.......... ....+......+...+++..+...+...... ........+......+...++...+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 466777777777776654321 3567778888899999999999999988763 23445667777778888889999999
Q ss_pred HHHHHHHHCCCccCHHHHHHHHH-HHHccCCHHHHHHHHHHHHH
Q 037911 366 SLLYEMMGNGIYPDTFTCQIIVQ-GYGKEGRLLSALNLVVELQR 408 (609)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~~~ 408 (609)
..+.........+ ......... .+...|+++.|...+.+...
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 158 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALE 158 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999988754333 222333333 78899999999999998855
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.36 E-value=0.34 Score=28.62 Aligned_cols=28 Identities=11% Similarity=0.103 Sum_probs=23.6
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHh
Q 037911 128 NYCLIVHILAWNNKFSFAMKMLCELVEL 155 (609)
Q Consensus 128 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 155 (609)
+|..|.++|.+.|++++|++++++.+..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5788999999999999999999996643
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.22 E-value=17 Score=38.09 Aligned_cols=178 Identities=18% Similarity=0.208 Sum_probs=94.7
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHH----HH-HHHcCChHHHHHHHHHHHH-------cCCCCCHHhHHHHHHHHHhc
Q 037911 221 IDQCWQVYEEMGRIGICPNTHTFNILT----HV-FCKNGDVDKVNGFLEKIEE-------EGFDPDLVTYNTLISSYCKK 288 (609)
Q Consensus 221 ~~~a~~~~~~m~~~~~~~~~~~~~~l~----~~-~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~ 288 (609)
...|.+.++...+.|. ......+. .+ +....+.+.|...|+.+.+ .| .....+.+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 3456666666666542 22221121 12 3345677777777777765 44 333555666666653
Q ss_pred C-----CHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----Hc
Q 037911 289 G-----RLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCK-EGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYC----KE 358 (609)
Q Consensus 289 g-----~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~----~~ 358 (609)
. +.+.|+.++.+.-+.|.. +...+-..+..... ..+...|.++|...-+.|.. ..+-.+..+|. -.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcC
Confidence 3 566688888877777643 43333222222222 24567888888888877643 22222222221 22
Q ss_pred CChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 037911 359 GKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFG 410 (609)
Q Consensus 359 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 410 (609)
.+.+.|..++.+..+.| .|...--...+..+.. ++++.+.-.+..+.+.+
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 35677888888877776 2222222222333333 66666666666555554
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.04 E-value=18 Score=38.07 Aligned_cols=99 Identities=8% Similarity=0.127 Sum_probs=48.3
Q ss_pred HHHhCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCh
Q 037911 180 YVKVGLIRESFKTFRKTLDVGFQP---SIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDV 256 (609)
Q Consensus 180 ~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 256 (609)
+.+.+.+++|++..+..... .+ -...+...+..+...|++++|-...-.|.. -+..-|...+..+...++.
T Consensus 366 ll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~~~l 439 (846)
T KOG2066|consen 366 LLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAELDQL 439 (846)
T ss_pred HHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhcccccc
Confidence 45666666666666554432 22 233455566666666666666666666654 2344444444444444443
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 037911 257 DKVNGFLEKIEEEGFDPDLVTYNTLISSYCK 287 (609)
Q Consensus 257 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 287 (609)
.....+ +.......+...|..++..+..
T Consensus 440 ~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 440 TDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred chhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 322221 1111112344456655555544
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.56 E-value=9.3 Score=33.81 Aligned_cols=52 Identities=12% Similarity=-0.005 Sum_probs=28.6
Q ss_pred CCHhHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 037911 499 GRSGEAVSLMDEMLES--GMLPD---SQICRVLINGYCMEKDVNKAEALLGFFAKKF 550 (609)
Q Consensus 499 g~~~~A~~~~~~~~~~--~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 550 (609)
.++++|+..|+..-+- |-..+ ...+.-+...-...+++.+|.++|++.....
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666666665431 11111 1223333444456678888888888777653
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=91.44 E-value=6.8 Score=31.99 Aligned_cols=53 Identities=21% Similarity=0.167 Sum_probs=40.6
Q ss_pred hCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCC
Q 037911 138 WNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVG 200 (609)
Q Consensus 138 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 200 (609)
..++++++..+++.+.-..+ ..+..++|... .+...|++.+|+.+|+++.+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP-~~~e~d~~dg~---------l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRP-NLKELDMFDGW---------LLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCC-CccccchhHHH---------HHHHcCCHHHHHHHHHhhhccC
Confidence 47888899999998887733 33555666655 4689999999999999998754
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.13 E-value=9.1 Score=32.88 Aligned_cols=89 Identities=11% Similarity=0.002 Sum_probs=57.8
Q ss_pred HHHhcCCCHhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhc
Q 037911 493 CCFCGIGRSGEAVSLMDEMLESGMLPDS----QICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAED 568 (609)
Q Consensus 493 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 568 (609)
..+...|++++|..-++..... .-|. .+-..|.......|.+++|.+.++.....+. .......-.+++...
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~--t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~k 172 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ--TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAK 172 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc--chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHc
Confidence 4566778888888888777642 1121 1223456667778888888888876663321 222234445778888
Q ss_pred CCHHHHHHHHHHHHHcC
Q 037911 569 GDLSKLMELQKRFLRLG 585 (609)
Q Consensus 569 g~~~~A~~~~~~m~~~g 585 (609)
|+-++|+.-|++.++.+
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 88888888888888764
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=91.06 E-value=17 Score=35.84 Aligned_cols=121 Identities=12% Similarity=0.080 Sum_probs=74.7
Q ss_pred HHhCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHH
Q 037911 181 VKVGLIRESFKTFRKTL-DVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKV 259 (609)
Q Consensus 181 ~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a 259 (609)
...|+...|-+-+...+ ...-.|+.... ........|+++.+...+...... +.....+...+++...+.|++++|
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l--~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQL--RSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHH--HHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHH
Confidence 35566666654444333 33223333332 233455678888888887766443 345567778888888888899999
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCC
Q 037911 260 NGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRN 305 (609)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 305 (609)
..+-+.|....++ +...........-..|-++++...|+++...+
T Consensus 377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 8888888776554 33333333333344566788888888876544
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.75 E-value=0.82 Score=26.26 Aligned_cols=29 Identities=10% Similarity=0.145 Sum_probs=25.4
Q ss_pred HhHHHHHHHHHhCCChhHHHHHHHHHHHh
Q 037911 127 SNYCLIVHILAWNNKFSFAMKMLCELVEL 155 (609)
Q Consensus 127 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 155 (609)
..|..+..++...|++++|++.++++++.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 56788999999999999999999999976
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.58 E-value=0.35 Score=28.14 Aligned_cols=31 Identities=16% Similarity=0.191 Sum_probs=17.6
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 037911 194 RKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCW 225 (609)
Q Consensus 194 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 225 (609)
++.++.. |-+..+|+.+...|...|++++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3444433 445666666666666666666654
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=90.52 E-value=5.5 Score=34.22 Aligned_cols=62 Identities=18% Similarity=0.216 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037911 207 SCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPN--THTFNILTHVFCKNGDVDKVNGFLEKIEE 268 (609)
Q Consensus 207 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 268 (609)
.+..+...|++.|+.+.|.+.|.++.+....+. ...+-.+|......+++..+...+.+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455566667777777777777777665432222 23445556666666666666666655443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.43 E-value=4.8 Score=40.69 Aligned_cols=100 Identities=14% Similarity=0.178 Sum_probs=61.3
Q ss_pred HHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 037911 181 VKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVN 260 (609)
Q Consensus 181 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 260 (609)
.+.|+++.|.++..+. .+..-|..|.++....+++..|.+.|.+... |..|+-.+...|+-+...
T Consensus 648 l~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence 3667777776665543 3455677777777777777777777776544 234555666667666555
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHH
Q 037911 261 GFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIM 301 (609)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 301 (609)
.+-....+.|. .|....+|...|+++++++++.+-
T Consensus 713 ~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 713 VLASLAKKQGK------NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHhc
Confidence 55555555542 122334555667777777766543
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.39 E-value=5 Score=34.46 Aligned_cols=96 Identities=13% Similarity=0.130 Sum_probs=63.4
Q ss_pred HHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 037911 133 VHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLL 212 (609)
Q Consensus 133 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll 212 (609)
.+-+..+|+|.+|..-|.+++.. +|+...-..+++- ....-++.+.++++.|++-..+.++.+ +....+...-.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~---cp~~~~e~rsIly--~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRA 175 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES---CPSTSTEERSILY--SNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRA 175 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh---CccccHHHHHHHH--hhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHH
Confidence 55678899999999999999987 4433332222221 001117889999999999999988876 22222223333
Q ss_pred HHHHhcCChHHHHHHHHHHhhC
Q 037911 213 NGLLKLNCIDQCWQVYEEMGRI 234 (609)
Q Consensus 213 ~~~~~~~~~~~a~~~~~~m~~~ 234 (609)
.+|-+...+++|++=|+++.+.
T Consensus 176 eayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 176 EAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHhhhhHHHHHHHHHHHHHh
Confidence 4667777788888888877764
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.08 E-value=11 Score=32.30 Aligned_cols=54 Identities=19% Similarity=0.148 Sum_probs=23.3
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhC
Q 037911 249 VFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRR 304 (609)
Q Consensus 249 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 304 (609)
.....|.+|+|...++...+.++. ......-.+.+...|+-++|..-|++..+.
T Consensus 135 vq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 135 VQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 334444455555544444433221 111222234445555555555555555444
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.91 E-value=13 Score=32.58 Aligned_cols=88 Identities=13% Similarity=0.105 Sum_probs=49.6
Q ss_pred HHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHH
Q 037911 180 YVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKV 259 (609)
Q Consensus 180 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a 259 (609)
|-..|-..-|.--|.+..... +.-+.+||.|.--+...|+++.|.+.|+...+.+. ....+...-.-++.--|++.-|
T Consensus 75 YDSlGL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp-~y~Ya~lNRgi~~YY~gR~~LA 152 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAHLNRGIALYYGGRYKLA 152 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCC-cchHHHhccceeeeecCchHhh
Confidence 444455555555565555532 23355777777777778888888888887776431 1122222112223345777777
Q ss_pred HHHHHHHHHc
Q 037911 260 NGFLEKIEEE 269 (609)
Q Consensus 260 ~~~~~~~~~~ 269 (609)
.+=+...-+.
T Consensus 153 q~d~~~fYQ~ 162 (297)
T COG4785 153 QDDLLAFYQD 162 (297)
T ss_pred HHHHHHHHhc
Confidence 7666655544
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.58 E-value=14 Score=32.42 Aligned_cols=67 Identities=12% Similarity=0.034 Sum_probs=39.0
Q ss_pred CCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 037911 159 CPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGR 233 (609)
Q Consensus 159 ~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 233 (609)
.|.-+++|+.+.- .+...|+++.|.+.|+...+.+..-+-...|.-|..| --|++..|.+=+-..-+
T Consensus 95 ~P~m~~vfNyLG~-------Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 95 RPDMPEVFNYLGI-------YLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred CCCcHHHHHHHHH-------HHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHHHHHHHHh
Confidence 3556677777765 6677777777777777777754322222333222222 24667777665555544
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=89.48 E-value=4.2 Score=35.16 Aligned_cols=77 Identities=8% Similarity=-0.003 Sum_probs=34.1
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHhcCCCHh
Q 037911 426 CQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDR---NIKPSLSTYRALICCFCGIGRSG 502 (609)
Q Consensus 426 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~~~ 502 (609)
.+.|+ ++|.+.|-.+...+...++.....|...|. ..+.+++..++....+. +-.+|+..+..|+..+.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34444 555555555544443444444444444443 24444555544444432 11334444444444444444444
Q ss_pred HH
Q 037911 503 EA 504 (609)
Q Consensus 503 ~A 504 (609)
.|
T Consensus 196 ~A 197 (203)
T PF11207_consen 196 QA 197 (203)
T ss_pred hh
Confidence 43
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.09 E-value=0.94 Score=25.99 Aligned_cols=28 Identities=14% Similarity=0.255 Sum_probs=17.6
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037911 557 SYNAVFNMFAEDGDLSKLMELQKRFLRL 584 (609)
Q Consensus 557 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 584 (609)
.|..+...+...|++++|++.|++.++.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3555666677777777777777776643
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.06 E-value=1 Score=25.92 Aligned_cols=28 Identities=29% Similarity=0.428 Sum_probs=18.2
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037911 557 SYNAVFNMFAEDGDLSKLMELQKRFLRL 584 (609)
Q Consensus 557 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 584 (609)
+|..++.+|...|++++|++.|++.++.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 4566666777777777777777776643
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.87 E-value=33 Score=35.94 Aligned_cols=182 Identities=16% Similarity=0.180 Sum_probs=112.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHH----H-HHhcCChHHHHHHHHHHhh-------CCCCCCHHHHHHHHHHHHH
Q 037911 185 LIRESFKTFRKTLDVGFQPSIVSCNFLLN----G-LLKLNCIDQCWQVYEEMGR-------IGICPNTHTFNILTHVFCK 252 (609)
Q Consensus 185 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~----~-~~~~~~~~~a~~~~~~m~~-------~~~~~~~~~~~~l~~~~~~ 252 (609)
...+|.+.++...+.|. ...-..+.. + +....+.+.|...|+.+.+ .| .......+..+|.+
T Consensus 227 ~~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQ 300 (552)
T ss_pred hhhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhc
Confidence 35789999999988762 222222222 2 4466789999999999866 44 33355566677766
Q ss_pred cC-----ChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh-cCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHH--hcC
Q 037911 253 NG-----DVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCK-KGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLC--KEG 324 (609)
Q Consensus 253 ~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~--~~~ 324 (609)
.. +.+.|..++.+..+.|. |+...+-..+..... ..+...|.++|....+.|.. ....+..++.... -..
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r 378 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVER 378 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCC
Confidence 43 67789999999988873 344433333322222 24678999999999988864 2222222222222 334
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 037911 325 KVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGI 376 (609)
Q Consensus 325 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 376 (609)
+.+.|..++.+..+.| .|-..--...+..+.. +..+.+.-.+..+.+.|.
T Consensus 379 ~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred CHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 7889999999999987 3332222222333333 777777776666665543
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=88.84 E-value=4.1 Score=30.23 Aligned_cols=63 Identities=13% Similarity=0.196 Sum_probs=44.6
Q ss_pred CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHH
Q 037911 500 RSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFN 563 (609)
Q Consensus 500 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 563 (609)
+.-++.+-++.+....+.|++.+..+.+++|.+.+|+..|.++|+..+.+... +...|..++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~-~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA-HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC-chhhHHHHHH
Confidence 44466666777777778888888888888888888888888888877744221 3345655543
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=88.66 E-value=1.5 Score=40.72 Aligned_cols=51 Identities=8% Similarity=-0.048 Sum_probs=23.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcCCCHhHHHHHHHHHH
Q 037911 460 LCKCDSVADALLLKDEMVDRNIKP-SLSTYRALICCFCGIGRSGEAVSLMDEML 512 (609)
Q Consensus 460 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 512 (609)
|.++|.+++|+..|...+... | |.+++..-..+|.+..++..|..=...++
T Consensus 107 yFKQgKy~EAIDCYs~~ia~~--P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAVY--PHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhccchhHHHHHhhhhhccC--CCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 455555555555554444322 3 44444444445555555444444444433
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=88.46 E-value=4.1 Score=30.58 Aligned_cols=60 Identities=15% Similarity=0.213 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHH
Q 037911 503 EAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFN 563 (609)
Q Consensus 503 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 563 (609)
+..+-++.+....+.|++.+..+.+++|.+.+++..|.++|+.++.+-. .....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~-~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG-NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT-T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc-ChHHHHHHHHH
Confidence 5666667777777888888888888999999999999998888876532 22226666654
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=88.39 E-value=14 Score=30.86 Aligned_cols=95 Identities=17% Similarity=0.114 Sum_probs=53.7
Q ss_pred HHHHHHHHH---HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHH
Q 037911 451 EIYNELMES---LCKCDSVADALLLKDEMVDRNIKPSLSTYRAL-ICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVL 526 (609)
Q Consensus 451 ~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 526 (609)
.+.+.|+.. -.+.++.+++..++..+.-. .|.......+ ...+...|++.+|+.+|+++.+. .|.......|
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kAL 83 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKAL 83 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHH
Confidence 344444443 34678888888888888763 3554433322 23456788888888888887653 3444444455
Q ss_pred HHHHHccCCHHHHHHHHHHHHHc
Q 037911 527 INGYCMEKDVNKAEALLGFFAKK 549 (609)
Q Consensus 527 ~~~~~~~g~~~~A~~~~~~~~~~ 549 (609)
+..|.....-..-..+-+++.+.
T Consensus 84 lA~CL~~~~D~~Wr~~A~evle~ 106 (160)
T PF09613_consen 84 LALCLYALGDPSWRRYADEVLES 106 (160)
T ss_pred HHHHHHHcCChHHHHHHHHHHhc
Confidence 55444433323333333444444
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.27 E-value=2.1 Score=39.38 Aligned_cols=49 Identities=16% Similarity=0.205 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 037911 185 LIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGR 233 (609)
Q Consensus 185 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 233 (609)
+.++++.++..=++.|+-||..+++.+|+.+.+.+++.+|..+.-.|..
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4455666666556666666666666666666666666666555555443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=88.27 E-value=1.6 Score=25.10 Aligned_cols=29 Identities=14% Similarity=0.126 Sum_probs=25.5
Q ss_pred HhHHHHHHHHHhCCChhHHHHHHHHHHHh
Q 037911 127 SNYCLIVHILAWNNKFSFAMKMLCELVEL 155 (609)
Q Consensus 127 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 155 (609)
.+|..++.++...|++++|+..|+++++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 57888999999999999999999999876
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=88.25 E-value=0.92 Score=25.79 Aligned_cols=29 Identities=7% Similarity=0.051 Sum_probs=24.8
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHhh
Q 037911 128 NYCLIVHILAWNNKFSFAMKMLCELVELV 156 (609)
Q Consensus 128 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 156 (609)
++..++.++.+.|++++|.+.|+++++..
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 45677888899999999999999999873
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=88.10 E-value=0.72 Score=26.81 Aligned_cols=22 Identities=27% Similarity=0.676 Sum_probs=14.1
Q ss_pred ChhcHHHHHHHHHhcCCHHHHH
Q 037911 554 DTESYNAVFNMFAEDGDLSKLM 575 (609)
Q Consensus 554 ~~~~~~~l~~~~~~~g~~~~A~ 575 (609)
|+..|+.+...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 4466666666666666666664
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.67 E-value=41 Score=35.61 Aligned_cols=102 Identities=8% Similarity=0.048 Sum_probs=59.9
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc
Q 037911 212 LNGLLKLNCIDQCWQVYEEMGRIGICP---NTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKK 288 (609)
Q Consensus 212 l~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 288 (609)
++-+.+.+.+++|+++.+.... ..| -.......|..+.-.|++++|-...-.|... +..-|...+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 4556667788888877766543 233 2345566677777778888888777777643 455565555555555
Q ss_pred CCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHh
Q 037911 289 GRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCK 322 (609)
Q Consensus 289 g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 322 (609)
++......+ +.......+...|..++..+..
T Consensus 437 ~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 554333222 2222222345567666666665
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=87.32 E-value=78 Score=38.45 Aligned_cols=317 Identities=11% Similarity=0.039 Sum_probs=154.0
Q ss_pred HHHHHHHcCChHHHHHHHHHH----HHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHH
Q 037911 246 LTHVFCKNGDVDKVNGFLEKI----EEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLC 321 (609)
Q Consensus 246 l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~ 321 (609)
+..+-.+++.+..|...++.- .+. ......|-.+...|..-+++|....+...... +... ..-|-...
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl-~~qil~~e 1460 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSL-YQQILEHE 1460 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccH-HHHHHHHH
Confidence 444555677788888887773 221 11223344455578888888877777664211 1122 23344556
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHH-HHHHHccCCHHHH
Q 037911 322 KEGKVREAHQLFHRMVHRGLSPD-IVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQII-VQGYGKEGRLLSA 399 (609)
Q Consensus 322 ~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~A 399 (609)
..|++..|...|+.+.+. .|+ ..+++-++......|.++.+....+-.... ..+....++.+ +.+--+.++++..
T Consensus 1461 ~~g~~~da~~Cye~~~q~--~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQK--DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred hhccHHHHHHHHHHhhcC--CCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhh
Confidence 778888888888888876 333 556666666666677777776655554433 12222223222 3334566666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHH--HHHHHHhcCC--hHHHHHHHHHHH--------hCCCC-CCHHHHHHHHHHHHhcCCH
Q 037911 400 LNLVVELQRFGVSISRDIYDY--LIVALCQDNR--PFAATSLLERIG--------QDGYV-PSLEIYNELMESLCKCDSV 466 (609)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~--ll~~~~~~~~--~~~a~~~~~~~~--------~~~~~-~~~~~~~~l~~~~~~~g~~ 466 (609)
...+. .. +..+|.. +...+.+..+ .-.-...++.+. ..+.. .-...|..++....-..--
T Consensus 1538 e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~ 1610 (2382)
T KOG0890|consen 1538 ESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELE 1610 (2382)
T ss_pred hhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 55554 11 1111111 2222222211 111111222221 11111 1123344444333221111
Q ss_pred HHHHHHHHHHH-HCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHH-HHHCCCCC-----CHHHHHHHHHHHHccCCHHHH
Q 037911 467 ADALLLKDEMV-DRNIKPSLSTYRALICCFCGIGRSGEAVSLMDE-MLESGMLP-----DSQICRVLINGYCMEKDVNKA 539 (609)
Q Consensus 467 ~~A~~~~~~~~-~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A 539 (609)
.....+ .... .....-+..-|..-+..-....+..+-+--+++ +......| -..+|-...+.....|.++.|
T Consensus 1611 ~~~~~l-~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A 1689 (2382)
T KOG0890|consen 1611 NSIEEL-KKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRA 1689 (2382)
T ss_pred HHHHHh-hccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHH
Confidence 111111 1000 001111112222222211111112221111111 11111122 245677888888889999999
Q ss_pred HHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037911 540 EALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRL 584 (609)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 584 (609)
...+-.+.+.+ -+..+-..+..+...|+...|+.++++-++.
T Consensus 1690 ~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1690 QNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 98887776553 3455667777888999999999999888855
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=86.95 E-value=13 Score=32.30 Aligned_cols=72 Identities=10% Similarity=-0.004 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC---CCCCCHHHHHHHHHHHHHcCChHHH
Q 037911 187 RESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRI---GICPNTHTFNILTHVFCKNGDVDKV 259 (609)
Q Consensus 187 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~l~~~~~~~g~~~~a 259 (609)
++|++.|-++...+.--++.....|...|. ..+.++++.++-+..+. +-.+|+..+..|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 344444444444443333333333333333 34455555554444321 1234555555555555555555554
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=86.30 E-value=6.9 Score=29.10 Aligned_cols=66 Identities=8% Similarity=0.027 Sum_probs=53.1
Q ss_pred CHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHh
Q 037911 535 DVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMIHSLW 601 (609)
Q Consensus 535 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 601 (609)
|.-++.+-++.+......|++.+..+.+++|.+.+++.-|+++++-.+.+ ...+...|..+++.+.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lqeik 87 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQEIK 87 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHHHHh
Confidence 55567777888887888999999999999999999999999999988744 2225567887777653
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=86.26 E-value=1.9 Score=26.10 Aligned_cols=30 Identities=17% Similarity=0.260 Sum_probs=26.1
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHHHh
Q 037911 126 SSNYCLIVHILAWNNKFSFAMKMLCELVEL 155 (609)
Q Consensus 126 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 155 (609)
..+++.++..|...|++++|..++++++..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 457889999999999999999999999876
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=86.23 E-value=34 Score=33.26 Aligned_cols=65 Identities=15% Similarity=0.020 Sum_probs=40.1
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037911 379 DTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSI---SRDIYDYLIVALCQDNRPFAATSLLERIGQ 443 (609)
Q Consensus 379 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 443 (609)
...+|..+.+.+.+.|.++.|...+..+...+... .+.....-+..+...|+..+|...++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34556667777777777777777777766543111 334444455666666766777776666544
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.08 E-value=15 Score=37.45 Aligned_cols=100 Identities=22% Similarity=0.254 Sum_probs=55.3
Q ss_pred HhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 037911 286 CKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESK 365 (609)
Q Consensus 286 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 365 (609)
.+.|+++.|.++..+.. +..-|..|.++....+++..|.+.|..... |..|+-.+...|+-+...
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence 44566666666554432 445566666666667777766666665443 334555555566655544
Q ss_pred HHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 037911 366 SLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVEL 406 (609)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 406 (609)
.+-....+.|.. |...-+|...|+++++++++..-
T Consensus 713 ~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 713 VLASLAKKQGKN------NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHhhccc------chHHHHHHHcCCHHHHHHHHHhc
Confidence 444444444421 22233455566666666666543
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=85.98 E-value=52 Score=35.04 Aligned_cols=89 Identities=16% Similarity=0.140 Sum_probs=41.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CccCHHHHHHHHHHHHc---
Q 037911 317 MNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNG-IYPDTFTCQIIVQGYGK--- 392 (609)
Q Consensus 317 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~--- 392 (609)
...+.-.|.++.|.+.+-. ..+...|.+++...+..|. -+......-..+.... -.|....+..||..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~g---LL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYG---LLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcC---CCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 3445668999999998877 2223446666655554443 2222221113333211 11122557778877765
Q ss_pred cCCHHHHHHHHHHHHHCC
Q 037911 393 EGRLLSALNLVVELQRFG 410 (609)
Q Consensus 393 ~~~~~~A~~~~~~~~~~~ 410 (609)
..+..+|++++--+....
T Consensus 340 ~td~~~Al~Y~~li~~~~ 357 (613)
T PF04097_consen 340 ITDPREALQYLYLICLFK 357 (613)
T ss_dssp TT-HHHHHHHHHGGGGS-
T ss_pred ccCHHHHHHHHHHHHHcC
Confidence 467888988887776553
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=85.92 E-value=5.9 Score=29.80 Aligned_cols=65 Identities=8% Similarity=-0.005 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHh
Q 037911 536 VNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMIHSLW 601 (609)
Q Consensus 536 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 601 (609)
.-+..+-++.+......|++.+..+.+++|.+.+++.-|+++++-.+.+ ..+....|..+++.+.
T Consensus 26 ~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lqElk 90 (108)
T PF02284_consen 26 GWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQELK 90 (108)
T ss_dssp HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHHHHh
Confidence 3456677777777777999999999999999999999999999999865 2333338888887654
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=85.88 E-value=31 Score=32.36 Aligned_cols=202 Identities=15% Similarity=0.040 Sum_probs=103.0
Q ss_pred CHHHHHHHHHHHHccCC----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-----HHHHHHHHHHHhCCCCCC
Q 037911 379 DTFTCQIIVQGYGKEGR----LLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRP-----FAATSLLERIGQDGYVPS 449 (609)
Q Consensus 379 ~~~~~~~l~~~~~~~~~----~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-----~~a~~~~~~~~~~~~~~~ 449 (609)
|...-...+.++.+.|+ .++++..+..+... .++..+-...+.++...+.. ..+...+..... .++
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~ 141 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKS 141 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCC
Confidence 33334444444444443 23455555544222 34445555555555444321 112222222221 224
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC-CHhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037911 450 LEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIG-RSGEAVSLMDEMLESGMLPDSQICRVLIN 528 (609)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 528 (609)
..+-...+.++.+.++ ++|...+-.+.+. +|...-...+.++.+.+ ....+...+..+.. .++..+-...+.
T Consensus 142 ~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~ 214 (280)
T PRK09687 142 TNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAII 214 (280)
T ss_pred HHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHH
Confidence 4444555666666665 3455555555542 34444444444444432 23456666666653 346666666777
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHh
Q 037911 529 GYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMIHSLW 601 (609)
Q Consensus 529 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 601 (609)
++.+.|+ ..|...+-...+.+ + .....+.++...|.. +|+..+.++.+. .||..+-...+.++.
T Consensus 215 aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 215 GLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 7777777 45555555555432 2 234566777777774 677778777753 456666666666554
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.77 E-value=16 Score=33.96 Aligned_cols=50 Identities=24% Similarity=0.342 Sum_probs=30.9
Q ss_pred CChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 037911 359 GKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQR 408 (609)
Q Consensus 359 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 408 (609)
-+.++++.++..-+.-|+.||..+++.+|+.+.+.+++.+|..+...|..
T Consensus 114 y~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 114 YDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred cChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 34556666666666666666666666666666666666666666555543
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=85.10 E-value=1.8 Score=26.24 Aligned_cols=28 Identities=21% Similarity=0.380 Sum_probs=21.0
Q ss_pred hcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037911 556 ESYNAVFNMFAEDGDLSKLMELQKRFLR 583 (609)
Q Consensus 556 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 583 (609)
.+++.+...|...|++++|.+++++.++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4567788888888888888888887764
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=84.79 E-value=1.7 Score=27.03 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=12.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHHH
Q 037911 526 LINGYCMEKDVNKAEALLGFFAK 548 (609)
Q Consensus 526 l~~~~~~~g~~~~A~~~~~~~~~ 548 (609)
|..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 45555555555555555555553
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=84.54 E-value=36 Score=31.94 Aligned_cols=136 Identities=18% Similarity=0.082 Sum_probs=67.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037911 414 SRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCD-SVADALLLKDEMVDRNIKPSLSTYRALI 492 (609)
Q Consensus 414 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~li 492 (609)
+..+-...+.++.+.++ .++...+-.+... ++..+-...+.++.+.+ ....+...+..+... ++...-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQD---KNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcC---CChHHHHHHH
Confidence 44455555566666665 4555555555432 23334444444444432 133444444444432 4555555566
Q ss_pred HHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHH
Q 037911 493 CCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMF 565 (609)
Q Consensus 493 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 565 (609)
.++.+.|+ ..|+..+-+..+.+ + .....+.++...|+. +|...+..+.+. .+|..+-...+.++
T Consensus 214 ~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 214 IGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 66666666 34555554444432 2 223455666666663 566666666654 33554444444433
|
|
| >PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human | Back alignment and domain information |
|---|
Probab=84.36 E-value=59 Score=34.30 Aligned_cols=18 Identities=22% Similarity=0.263 Sum_probs=13.3
Q ss_pred HHHHhCCHHHHHHHHHHH
Q 037911 179 AYVKVGLIRESFKTFRKT 196 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~ 196 (609)
.+.-.|.+++|.++++..
T Consensus 157 ~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 157 RLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp HHHHTT-HHHHHHHH-TT
T ss_pred HHHHcCCHHHHHHHHHhc
Confidence 788899999999888543
|
Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B. |
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=83.56 E-value=37 Score=31.43 Aligned_cols=167 Identities=13% Similarity=0.109 Sum_probs=95.9
Q ss_pred hHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHH-hC-
Q 037911 107 VSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVK-VG- 184 (609)
Q Consensus 107 ~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~g- 184 (609)
+.-..|++-...+......+. |..++ .++...-+|..+++..-.. +..-.++.+...++. .... .+
T Consensus 113 ~Dli~FL~~~i~~~~~~k~~~-Y~~LV---k~N~~Vv~aL~L~~~~~~~-~~Ii~d~evislLL~-------sMv~~~~~ 180 (292)
T PF13929_consen 113 EDLISFLKLVIINLSSNKSFN-YWDLV---KRNKIVVEALKLYDGLNPD-ESIIFDEEVISLLLK-------SMVIDENT 180 (292)
T ss_pred HHHHHHHHHHHhccccccchH-HHHHH---HhhHHHHHHHHHhhccCcc-cceeeChHHHHHHHH-------HHHhcccc
Confidence 345666766665433333322 43333 2333455666666622111 112245555555555 3333 11
Q ss_pred CHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 037911 185 LIRESFKTFRKTL-DVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRI-GICPNTHTFNILTHVFCKNGDVDKVNGF 262 (609)
Q Consensus 185 ~~~~A~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 262 (609)
....--++.+-+. +.|-.++..+...++..+++.+++.+-+++++.-... +..-|...|..+|+...+.|+..-..++
T Consensus 181 ~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ki 260 (292)
T PF13929_consen 181 KLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKI 260 (292)
T ss_pred chhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHH
Confidence 1111222222222 2334677777888889999999999999988887654 4556788888899999999998877777
Q ss_pred HHH-----HHHcCCCCCHHhHHHHHHHH
Q 037911 263 LEK-----IEEEGFDPDLVTYNTLISSY 285 (609)
Q Consensus 263 ~~~-----~~~~~~~~~~~~~~~li~~~ 285 (609)
.++ +.+.|+..+...-..+-..+
T Consensus 261 I~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 261 IDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred hhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 665 23445555555555544444
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=83.28 E-value=3.5 Score=23.54 Aligned_cols=29 Identities=17% Similarity=0.226 Sum_probs=26.2
Q ss_pred HhHHHHHHHHHhCCChhHHHHHHHHHHHh
Q 037911 127 SNYCLIVHILAWNNKFSFAMKMLCELVEL 155 (609)
Q Consensus 127 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 155 (609)
.+|..+..++...|++++|...|++.++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46888999999999999999999999876
|
... |
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=83.21 E-value=2.8 Score=29.76 Aligned_cols=50 Identities=22% Similarity=0.182 Sum_probs=38.3
Q ss_pred hCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHH
Q 037911 138 WNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFR 194 (609)
Q Consensus 138 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~ 194 (609)
..++.++|+..|..+++.....+.-..++..++. +|...|+++++++.--
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~q-------A~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQ-------AHMEWGKYREMLAFAL 67 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 6778889999999999875444444556667777 8999999999887653
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.10 E-value=39 Score=31.25 Aligned_cols=59 Identities=15% Similarity=0.102 Sum_probs=36.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 037911 313 YTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMM 372 (609)
Q Consensus 313 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 372 (609)
++.....|..+|.+.+|.++.+...... +.+...+-.++..+...||--.|.+-++.+.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3344556667777777777777666542 3355666667777777777666655555543
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=83.02 E-value=48 Score=32.25 Aligned_cols=65 Identities=15% Similarity=0.140 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhcCCCHhHHHHHHHHHHH
Q 037911 449 SLEIYNELMESLCKCDSVADALLLKDEMVDRNIKP---SLSTYRALICCFCGIGRSGEAVSLMDEMLE 513 (609)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 513 (609)
...+|..++..+.+.|.++.|...+..+...+... ++...-.-...+...|+..+|+..+++..+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34556666666777777777777766666532111 222233334445556666777766666655
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.96 E-value=79 Score=34.73 Aligned_cols=37 Identities=14% Similarity=0.187 Sum_probs=20.4
Q ss_pred HHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHH
Q 037911 355 YCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYG 391 (609)
Q Consensus 355 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 391 (609)
|......+-+..+++.+....-.++..-.+.++..|.
T Consensus 601 ~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 601 YLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred HhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 4455556666666666655444445555555555554
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=82.92 E-value=1.8 Score=24.46 Aligned_cols=24 Identities=17% Similarity=0.360 Sum_probs=13.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 037911 561 VFNMFAEDGDLSKLMELQKRFLRL 584 (609)
Q Consensus 561 l~~~~~~~g~~~~A~~~~~~m~~~ 584 (609)
+..++.+.|++++|.+.|+++++.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 444555556666666666655543
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.74 E-value=14 Score=31.92 Aligned_cols=88 Identities=11% Similarity=0.051 Sum_probs=46.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHc
Q 037911 459 SLCKCDSVADALLLKDEMVDRNIKPS-----LSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPD-SQICRVLINGYCM 532 (609)
Q Consensus 459 ~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 532 (609)
-+.+.|++++|..-|.+.++.-. +. ...|..-..++.+.+.++.|+.-..+.++.+ |+ ...+..-..+|.+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp-~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCP-STSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEK 180 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCc-cccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHh
Confidence 35556677777766666665421 11 1223333345556666666666666665432 22 2222233445556
Q ss_pred cCCHHHHHHHHHHHHHc
Q 037911 533 EKDVNKAEALLGFFAKK 549 (609)
Q Consensus 533 ~g~~~~A~~~~~~~~~~ 549 (609)
..++++|++=++++.+.
T Consensus 181 ~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES 197 (271)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 66666666666666654
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=82.40 E-value=26 Score=28.76 Aligned_cols=53 Identities=21% Similarity=0.258 Sum_probs=33.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHhcCCCHhHHHHHHHHHHHCC
Q 037911 461 CKCDSVADALLLKDEMVDRNIKPSLSTYRAL-ICCFCGIGRSGEAVSLMDEMLESG 515 (609)
Q Consensus 461 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~ 515 (609)
...++.+++..+++.|.-. .|+..-...+ ...+...|++++|.++|++..+.+
T Consensus 21 L~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 3467888888888887753 3443322211 233567788888888888887643
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=81.74 E-value=3.6 Score=23.52 Aligned_cols=28 Identities=21% Similarity=0.420 Sum_probs=21.7
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037911 557 SYNAVFNMFAEDGDLSKLMELQKRFLRL 584 (609)
Q Consensus 557 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 584 (609)
+|..+...|...|++++|.+.|++.++.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4667777888888888888888887753
|
... |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=81.49 E-value=19 Score=30.61 Aligned_cols=77 Identities=14% Similarity=0.221 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-----------hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 037911 185 LIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNC-----------IDQCWQVYEEMGRIGICPNTHTFNILTHVFCKN 253 (609)
Q Consensus 185 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-----------~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 253 (609)
.+++|+.-|++++... |..-.++..+..++...+. +++|.+.|++... ..|+...|+.-+....
T Consensus 50 miedAisK~eeAL~I~-P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~-- 124 (186)
T PF06552_consen 50 MIEDAISKFEEALKIN-PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAA-- 124 (186)
T ss_dssp HHHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH--
Confidence 3456666666666643 2233566666666654322 4455555555544 3577777776665542
Q ss_pred CChHHHHHHHHHHHHcC
Q 037911 254 GDVDKVNGFLEKIEEEG 270 (609)
Q Consensus 254 g~~~~a~~~~~~~~~~~ 270 (609)
+|-++..++.+.+
T Consensus 125 ----kap~lh~e~~~~~ 137 (186)
T PF06552_consen 125 ----KAPELHMEIHKQG 137 (186)
T ss_dssp ----THHHHHHHHHHSS
T ss_pred ----hhHHHHHHHHHHH
Confidence 4555555555543
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=81.43 E-value=0.97 Score=37.33 Aligned_cols=129 Identities=6% Similarity=0.015 Sum_probs=77.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 037911 456 LMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKD 535 (609)
Q Consensus 456 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 535 (609)
++..+.+.+..+....+++.+...+...+....+.++..|++.++.++..++++... . .-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~--~-----yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN--N-----YDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS--S-----S-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc--c-----cCHHHHHHHHHhcch
Confidence 566677778888888888888876655667777888888888877777777776221 1 222356667777777
Q ss_pred HHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHhccccc
Q 037911 536 VNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMIHSLWKGMER 606 (609)
Q Consensus 536 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 606 (609)
+++|.-++.++-... ..+..+...++++.|.++..+ .+|...|..+++.+...++.
T Consensus 86 ~~~a~~Ly~~~~~~~---------~al~i~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 86 YEEAVYLYSKLGNHD---------EALEILHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSKPF 141 (143)
T ss_dssp HHHHHHHHHCCTTHT---------TCSSTSSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTSTCT
T ss_pred HHHHHHHHHHcccHH---------HHHHHHHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcCcc
Confidence 777777665433211 111112233445555533322 34577788888777665543
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=80.55 E-value=2.6 Score=22.59 Aligned_cols=23 Identities=13% Similarity=-0.009 Sum_probs=18.8
Q ss_pred hHHHHHHHHHhCCChhHHHHHHH
Q 037911 128 NYCLIVHILAWNNKFSFAMKMLC 150 (609)
Q Consensus 128 ~~~~l~~~~~~~~~~~~A~~~~~ 150 (609)
....+..++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45677888899999999988775
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=80.45 E-value=20 Score=30.55 Aligned_cols=108 Identities=17% Similarity=0.186 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---hcCCh-------HHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHHcC
Q 037911 186 IRESFKTFRKTLDVGFQPSIVSCNFLLNGLL---KLNCI-------DQCWQVYEEMGRIGICPNT-HTFNILTHVFCKNG 254 (609)
Q Consensus 186 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~---~~~~~-------~~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~g 254 (609)
++.|.+.++.....+ +.|...++.-..++. +..+. ++|+.-|++... +.|+. .++..+..+|...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK--INPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHH
Confidence 456666666654443 455555444333333 33333 344444555544 45664 56666666665442
Q ss_pred ----C-------hHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhC
Q 037911 255 ----D-------VDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRR 304 (609)
Q Consensus 255 ----~-------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 304 (609)
+ +++|.+.|++.... .|+...|+.-+.... +|-++..++.+.
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~~~~ 136 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEIHKQ 136 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHHS
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHHHHH
Confidence 2 34444444444444 566667766665542 244444444443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 99.9 bits (247), Expect = 7e-22
Identities = 39/376 (10%), Positives = 99/376 (26%), Gaps = 32/376 (8%)
Query: 238 PNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYL 297
P L +D + + +L A +L
Sbjct: 90 PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149
Query: 298 ---YRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFA 354
+ ++ L L Y +M G ++G +E + + GL+PD++SY +
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209
Query: 355 YCKEGKMQES-KSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSI 413
++ + + + L +M G+ +++ + L + +
Sbjct: 210 MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLP 269
Query: 414 SRDIYDYLIVALCQDNRPFAATSLLERIGQDGY---------------VPSLEIYNELME 458
L+ + + + L + V S+E +
Sbjct: 270 PPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSK 329
Query: 459 SLCKCDSVADALLLKD-EMVDRNIKPSLSTYRALIC--------CFCGIGRSGEAVSLMD 509
+ L + + + R ++ + + + C + L+
Sbjct: 330 EVKHARKTLKTLRDQWEKALCRALRETKNRLEREVYEGRFSLYPFLCLLDEREVVRMLLQ 389
Query: 510 EMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDG 569
+ +S + + Q Y + A D
Sbjct: 390 VLQALPAQGESFTTLARELSARTFSRHVVQRQRVSGQVQALQ----NHYRKYLCLLASDA 445
Query: 570 DLSKLMELQKRFLRLG 585
++ + ++ + LG
Sbjct: 446 EVPEPCLPRQYWEALG 461
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 74.9 bits (182), Expect = 5e-14
Identities = 16/191 (8%), Positives = 53/191 (27%), Gaps = 4/191 (2%)
Query: 186 IRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQV---YEEMGRIGICPNTHT 242
+ + L + + + + +
Sbjct: 108 LDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDM 167
Query: 243 FNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGR-LNDAFYLYRIM 301
+N + + + G ++ L +++ G PDL++Y + ++ + M
Sbjct: 168 YNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQM 227
Query: 302 YRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKM 361
+ + + L++ + ++ H++ P V+ + L+ +
Sbjct: 228 SQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGR 287
Query: 362 QESKSLLYEMM 372
L +
Sbjct: 288 VSYPKLHLPLK 298
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 63.3 bits (152), Expect = 1e-10
Identities = 17/162 (10%), Positives = 46/162 (28%), Gaps = 4/162 (2%)
Query: 179 AYVKVGLIRESFKT---FRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIG 235
+ + + ++ N ++ G + + V + G
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 236 ICPNTHTFNILTHVFCKNGDVDK-VNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDA 294
+ P+ ++ + + LE++ +EG + L+S + L
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255
Query: 295 FYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRM 336
+ LP V + L+ + + +L +
Sbjct: 256 HKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPL 297
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 55.6 bits (132), Expect = 4e-08
Identities = 19/170 (11%), Positives = 50/170 (29%), Gaps = 4/170 (2%)
Query: 427 QDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADA---LLLKDEMVDRNIKP 483
+ + Q + + D + A L++ +
Sbjct: 104 GKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL 163
Query: 484 SLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYC-MEKDVNKAEAL 542
+L Y A++ + G E V ++ + ++G+ PD + ++D E
Sbjct: 164 TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERC 223
Query: 543 LGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLT 592
L +++ + + L + +++ F P +
Sbjct: 224 LEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVN 273
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 51.7 bits (122), Expect = 6e-07
Identities = 22/139 (15%), Positives = 43/139 (30%), Gaps = 3/139 (2%)
Query: 465 SVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICR 524
S A L+D P L+ G + + ++ + Q
Sbjct: 72 SKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLL 131
Query: 525 VLINGYCMEKDVNKAEALLGFF---AKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRF 581
+ + A LL +K ++ + YNAV +A G +L+ +
Sbjct: 132 AFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV 191
Query: 582 LRLGFAPNNLTCKYMIHSL 600
G P+ L+ + +
Sbjct: 192 KDAGLTPDLLSYAAALQCM 210
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.6 bits (138), Expect = 9e-09
Identities = 71/461 (15%), Positives = 146/461 (31%), Gaps = 122/461 (26%)
Query: 192 TFRKTLDVGFQPSIVS---CNFLLNGLLKLNCIDQCWQVY--EEMGRIGICPN--THTFN 244
++ L V F+ + V C + D + EE+ I + + + T
Sbjct: 17 QYKDILSV-FEDAFVDNFDCKDVQ---------DMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 245 ILTHVFCKN--------GDVDKVN-GFL-EKIEEEGFDPDLVTYNTLISSYCKKGRLNDA 294
+ + K +V ++N FL I+ E P + T + + ND
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM---MTRMYIEQRDRLYNDN 123
Query: 295 FYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLF-HRMVHRGLSPDIVSYNTLIF 353
++ + NV L Y L L + +R A + ++ G + +
Sbjct: 124 ----QVFAKYNV-SRLQPYLKLRQALLE---LRPAKNVLIDGVLGSGKT-------WVAL 168
Query: 354 AYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSI 413
C K+Q M I+ + S ++ LQ+ I
Sbjct: 169 DVCLSYKVQC-------KMDFKIF------------WLNLKNCNSPETVLEMLQKLLYQI 209
Query: 414 SRDIYDYLIVALCQDNRPFAATSLLER----IGQDGYVPSL----EIYN-ELMESL---C 461
+ + + N S+ + Y L + N + + C
Sbjct: 210 DPN---WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266
Query: 462 KCDSVADALLL--KDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLE--SGML 517
K +LL + + V + + +T+ +L + E SL+ + L+ L
Sbjct: 267 K-------ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD-EVKSLLLKYLDCRPQDL 318
Query: 518 PDSQICRV------LINGYCMEKDVNKAEALLGFFA--KKFQIYDTESYNAVFNMFAEDG 569
P ++ +I AE++ A ++ + + +
Sbjct: 319 P-REVLTTNPRRLSII-----------AESIRDGLATWDNWKHVNCDKLTTIIESS---- 362
Query: 570 DLSKL--MELQKRFLRLG-FAPN-NLTCKYMIHSLWKGMER 606
L+ L E +K F RL F P+ ++ ++ +W + +
Sbjct: 363 -LNVLEPAEYRKMFDRLSVFPPSAHIPTI-LLSLIWFDVIK 401
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 1e-05
Identities = 64/477 (13%), Positives = 129/477 (27%), Gaps = 127/477 (26%)
Query: 9 QSFCINFISKLAFSSFSSASSSYSLQIIQDSEHKSLSNPLYN----FLPETQNPN--KIV 62
Q S S++ + IQ + L + Y L QN
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262
Query: 63 DLICSSL-KKGDSHLTLLQNDLKPLLP-HLGAHEISRVLLRCQSDSVSALTFFNWVKNDL 120
+L C L +T + L H+ S L + S+ ++
Sbjct: 263 NLSCKILLTTRFKQVT---DFLSAATTTHISLDHHSMTLTPDEVKSL----LLKYLDCRP 315
Query: 121 EIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAY 180
+ P N ++ + E ++D + D NW +
Sbjct: 316 QDLPREV--LTT-------NPRRLSI-----IAESIRDGLATWD------------NWKH 349
Query: 181 VKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNT 240
V + ++ L+ P+ ++++ +
Sbjct: 350 VNCDKLTTIIESSLNVLE----PAEYR------------------KMFDRLS-------- 379
Query: 241 HTFNILTHVFCKNGDV-DKVNGFLEKI--EEEGFDPDLVTYNTLIS-SYCKKGRLNDAFY 296
VF + + + L I + D +V N L S +K
Sbjct: 380 --------VFPPSAHIPTIL---LSLIWFDVIKSDVMVVV-NKLHKYSLVEKQPKESTIS 427
Query: 297 LYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLF--HRMVHRGLSPDIVSYNTL--- 351
+ + + K H+ H + + D + L
Sbjct: 428 IP----------SI-----YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
Query: 352 IFAYC----KEGKMQESKSLLYEMMGNGIYPD-TFTCQ-IIVQGYGKEGRLLSALNLVVE 405
+++ K + E +L ++ D F Q I S LN + +
Sbjct: 473 FYSHIGHHLKNIEHPERMTLF-----RMVFLDFRFLEQKIRHDSTAWNAS-GSILNTLQQ 526
Query: 406 LQRFGVSISRD--IYDYLIVALCQDNRPFAATSLLE----RIGQDGYV-PSLEIYNE 455
L+ + I + Y+ L+ A+ D P +L+ + + + I+ E
Sbjct: 527 LKFYKPYICDNDPKYERLVNAI-LDFLPKIEENLICSKYTDLLRIALMAEDEAIFEE 582
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 2e-05
Identities = 28/152 (18%), Positives = 51/152 (33%), Gaps = 21/152 (13%)
Query: 238 PNT-HTFNILTHVFCKNGDVDKVNGFLEK---IEEEGFDPD----LVTYNTLISSYCKKG 289
P+ N L + G ++V + + I PD T N L S Y K+G
Sbjct: 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQG 183
Query: 290 RLNDAFYLYR---IMYRRNVL----PD-LVTYTTLMNGLCKEGKVREAHQLFHR-MVHRG 340
+ DA LY+ D + + K R++ ++
Sbjct: 184 KYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKA 243
Query: 341 LSPD----IVSYNTLIFAYCKEGKMQESKSLL 368
D + +L Y ++GK++ + +L
Sbjct: 244 CKVDSPTVNTTLRSLGALYRRQGKLEAAHTLE 275
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 1e-04
Identities = 40/157 (25%), Positives = 58/157 (36%), Gaps = 27/157 (17%)
Query: 238 PNT-HTFNILTHVFCKNGDVDKVNGFLEK---IEEEGFDPD----LVTYNTLISSYCKKG 289
P+ NIL V+ + L I E+ D T N L Y K+G
Sbjct: 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG 99
Query: 290 RLNDAFYLYR----IMYRRNVL----PD-LVTYTTLMNGLCKEGKVREAHQLFHR---MV 337
+ +A L + I R VL PD L +GK E + R +
Sbjct: 100 KYKEAEPLCKRALEI--REKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIY 157
Query: 338 HRGLSPD----IVSYNTLIFAYCKEGKMQESKSLLYE 370
L PD + N L Y K+GK Q++++ LY+
Sbjct: 158 ATRLGPDDPNVAKTKNNLASCYLKQGKYQDAET-LYK 193
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 4e-05
Identities = 27/152 (17%), Positives = 53/152 (34%), Gaps = 21/152 (13%)
Query: 238 PNT-HTFNILTHVFCKNGDVDKVNGFLEK---IEEEGFDPD----LVTYNTLISSYCKKG 289
P+ N L + G ++V + ++ I + PD T N L S Y K+G
Sbjct: 150 PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQG 209
Query: 290 RLNDAFYLYR---IMYRRNVL----PD-LVTYTTLMNGLCKEGKVREAHQLFHR-MVHRG 340
+ A LY+ + + +GK ++ ++
Sbjct: 210 KFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKA 269
Query: 341 L---SPDIV-SYNTLIFAYCKEGKMQESKSLL 368
SP + + L Y ++GK + +++L
Sbjct: 270 CKVDSPTVTTTLKNLGALYRRQGKFEAAETLE 301
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 2e-04
Identities = 26/123 (21%), Positives = 44/123 (35%), Gaps = 18/123 (14%)
Query: 264 EKIEEEGFDPD----LVTYNTLISSYCKKGRLNDAFYLYR--IMYRRNVL----PD-LVT 312
E + +G + L T + L+ Y +GR A L + + PD
Sbjct: 12 ENLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATM 71
Query: 313 YTTLMNGLCKEGKVREAHQLFHR---MVHRGLSPD----IVSYNTLIFAYCKEGKMQESK 365
L + K ++A L + + + L D + N L Y K GK +E++
Sbjct: 72 LNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAE 131
Query: 366 SLL 368
L
Sbjct: 132 PLC 134
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 3e-04
Identities = 39/157 (24%), Positives = 57/157 (36%), Gaps = 27/157 (17%)
Query: 238 PNT-HTFNILTHVFCKNGDVDKVNGFLEK---IEEEGFDPD----LVTYNTLISSYCKKG 289
P+ NIL V+ L I E+ D T N L Y K+G
Sbjct: 66 PDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG 125
Query: 290 RLNDAFYLYR----IMYRRNVL----PD-LVTYTTLMNGLCKEGKVREAHQLFHR---MV 337
+ +A L + I R VL PD L +GK E + R +
Sbjct: 126 KYKEAEPLCKRALEI--REKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183
Query: 338 HRGLSPD----IVSYNTLIFAYCKEGKMQESKSLLYE 370
L PD + N L Y K+GK +++++ LY+
Sbjct: 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAET-LYK 219
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 609 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.91 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.88 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.88 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.87 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.87 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.85 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.84 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.84 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.83 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.81 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.81 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.8 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.79 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.79 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.79 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.79 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.77 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.77 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.77 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.77 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.74 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.74 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.74 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.73 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.73 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.68 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.67 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.66 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.65 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.64 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.64 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.62 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.62 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.62 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.62 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.62 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.6 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.6 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.59 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.59 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.59 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.58 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.58 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.57 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.57 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.55 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.55 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.54 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.53 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.51 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.5 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.48 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.47 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.47 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.46 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.46 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.45 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.44 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.43 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.43 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.41 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.41 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.4 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.37 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.36 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.34 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.33 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.33 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.3 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.29 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.28 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.27 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.24 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.23 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.19 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.16 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.16 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.11 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.07 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.07 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.06 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.04 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.04 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.03 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.02 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.01 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.01 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.99 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.98 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.97 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.96 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.95 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.93 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.93 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.93 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.92 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.91 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.9 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.88 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.88 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.87 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.87 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.85 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.81 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.81 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.79 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.76 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.73 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.71 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.69 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.68 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.67 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.66 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.66 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.66 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.65 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.65 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.64 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.62 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.62 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.6 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.59 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.58 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.58 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.56 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.56 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.55 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.53 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.53 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.53 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.52 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.51 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.5 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.48 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.47 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.47 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.45 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.43 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.43 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.42 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.42 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.41 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.38 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.38 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.37 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.37 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.35 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.34 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.32 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.32 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.32 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.3 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.3 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.3 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.3 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.29 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.28 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.24 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.22 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.22 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.2 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.19 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.17 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.17 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.14 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.1 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.09 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.07 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.06 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.06 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.06 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.05 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.04 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.03 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.01 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.01 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.97 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.95 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.92 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.91 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.91 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.89 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.86 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.85 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.75 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.74 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.72 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.7 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.65 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.64 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.58 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.55 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.55 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.54 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.39 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.29 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.21 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.96 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.85 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.77 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.75 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.74 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.72 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.69 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.66 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.61 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.5 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.49 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.47 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.24 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.24 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.23 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.03 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.0 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.73 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.69 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.61 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.6 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.42 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.14 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.08 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 94.73 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.65 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 93.54 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.3 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 92.97 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 92.58 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 92.49 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 92.28 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 91.9 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 91.71 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 91.44 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 90.81 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 90.34 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 90.14 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 89.84 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 89.4 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 89.36 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 87.5 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 87.34 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 87.21 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 86.98 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 86.94 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 86.63 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 86.29 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 85.97 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 84.9 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 83.03 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 80.85 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 80.08 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-38 Score=335.19 Aligned_cols=453 Identities=9% Similarity=-0.031 Sum_probs=371.7
Q ss_pred CCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCC
Q 037911 124 PTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQP 203 (609)
Q Consensus 124 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 203 (609)
++...|+.++..+.+.|++++|..+++++.... ++...+..++. .|.+.|++++|+.+|+++... ++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~----p~~~~~~~l~~-------~~~~~g~~~~A~~~~~~~~~~--~~ 148 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDIT----GNPNDAFWLAQ-------VYCCTGDYARAKCLLTKEDLY--NR 148 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----CCHHHHHHHHH-------HHHHTTCHHHHHHHHHHTCGG--GT
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhC----CCchHHHHHHH-------HHHHcCcHHHHHHHHHHHhcc--cc
Confidence 466777778888888888888888887777542 23345555666 777788888888888777542 56
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhC---------------CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037911 204 SIVSCNFLLNGLLKLNCIDQCWQVYEEMGRI---------------GICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEE 268 (609)
Q Consensus 204 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 268 (609)
+..+++.++.+|.+.|++++|.++|+++... +.+.+..+|+.++.+|.+.|++++|.++|+++.+
T Consensus 149 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 228 (597)
T 2xpi_A 149 SSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALM 228 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777788888888888888888877743211 2233567777788888888888888888887776
Q ss_pred cCCCCCHHh--------------------------------------HHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCH
Q 037911 269 EGFDPDLVT--------------------------------------YNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDL 310 (609)
Q Consensus 269 ~~~~~~~~~--------------------------------------~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 310 (609)
.+.. +... |+.++..|.+.|++++|.++|+++.+. .++.
T Consensus 229 ~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~ 305 (597)
T 2xpi_A 229 VDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSS 305 (597)
T ss_dssp HCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCH
T ss_pred hCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchH
Confidence 5321 2223 333356677889999999999999876 4689
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHH
Q 037911 311 VTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGY 390 (609)
Q Consensus 311 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 390 (609)
.+|+.++.++.+.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|..+++++.+.. +.+..++..++..|
T Consensus 306 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 383 (597)
T 2xpi_A 306 DLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYY 383 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 999999999999999999999999999865 3377889999999999999999999999998653 44788999999999
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037911 391 GKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADAL 470 (609)
Q Consensus 391 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 470 (609)
.+.|++++|.++|+++.+.. +.+..++..++.++.+.|++++|...++++...+ +.+..+|+.++.+|.+.|++++|.
T Consensus 384 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 461 (597)
T 2xpi_A 384 LCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLAN 461 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998865 3478899999999999999999999999997765 457889999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHccCCHHHHHHHHH
Q 037911 471 LLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLES----GMLPD--SQICRVLINGYCMEKDVNKAEALLG 544 (609)
Q Consensus 471 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~ 544 (609)
++|+++.+... .+..+|..++.+|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++
T Consensus 462 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 540 (597)
T 2xpi_A 462 EYLQSSYALFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALN 540 (597)
T ss_dssp HHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999997643 57899999999999999999999999999875 66787 7899999999999999999999999
Q ss_pred HHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 037911 545 FFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMIHSL 600 (609)
Q Consensus 545 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 600 (609)
++.+.+ +.+..+|..++.+|.+.|++++|.++|+++++. .|+.......+..+
T Consensus 541 ~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~ 593 (597)
T 2xpi_A 541 QGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAI--SPNEIMASDLLKRA 593 (597)
T ss_dssp HHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHT
T ss_pred HHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCChHHHHHHHHH
Confidence 999874 447789999999999999999999999999966 67665554444433
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-37 Score=326.68 Aligned_cols=441 Identities=12% Similarity=0.047 Sum_probs=381.4
Q ss_pred hcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHH
Q 037911 101 RCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAY 180 (609)
Q Consensus 101 ~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 180 (609)
...|+++.|+.+|+.+.. ..|+..++..++.+|.+.|++++|..+++.+... +.+..++..++. .|
T Consensus 95 ~~~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~l~~-------~~ 160 (597)
T 2xpi_A 95 LMQQQYKCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY----NRSSACRYLAAF-------CL 160 (597)
T ss_dssp HHTTCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG----GTCHHHHHHHHH-------HH
T ss_pred HHccCchHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc----ccchhHHHHHHH-------HH
Confidence 446899999999999985 3568899999999999999999999999987643 467788889988 99
Q ss_pred HHhCCHHHHHHHHHHHHhC---------------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHH
Q 037911 181 VKVGLIRESFKTFRKTLDV---------------GFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNI 245 (609)
Q Consensus 181 ~~~g~~~~A~~~~~~~~~~---------------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 245 (609)
.+.|++++|+++|+++... +.+.+..+|+.++.+|.+.|++++|.++|++|.+.+ +.+...+..
T Consensus 161 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~ 239 (597)
T 2xpi_A 161 VKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQ 239 (597)
T ss_dssp HHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHH
Confidence 9999999999999954321 224468899999999999999999999999998754 223333333
Q ss_pred H--------------------------------------HHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 037911 246 L--------------------------------------THVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCK 287 (609)
Q Consensus 246 l--------------------------------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 287 (609)
+ +..|.+.|++++|.++|+++.+. +++..+++.++.+|.+
T Consensus 240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~ 317 (597)
T 2xpi_A 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFV 317 (597)
T ss_dssp HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHH
T ss_pred HHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHH
Confidence 2 45566789999999999999876 5789999999999999
Q ss_pred cCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 037911 288 KGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSL 367 (609)
Q Consensus 288 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 367 (609)
.|++++|+++|+++.+.+.. +..++..++.++.+.|++++|.++++++.+.. +.+..+++.++.+|.+.|++++|.++
T Consensus 318 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 395 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRY 395 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHH
Confidence 99999999999999987654 78899999999999999999999999998653 45788999999999999999999999
Q ss_pred HHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 037911 368 LYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYV 447 (609)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 447 (609)
|+++.+.. +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++|...++++.... +
T Consensus 396 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~ 472 (597)
T 2xpi_A 396 FSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-Q 472 (597)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-C
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 99998753 3367899999999999999999999999999876 4478899999999999999999999999997654 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHH
Q 037911 448 PSLEIYNELMESLCKCDSVADALLLKDEMVDR----NIKPS--LSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQ 521 (609)
Q Consensus 448 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 521 (609)
.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+.+ +.+..
T Consensus 473 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~ 551 (597)
T 2xpi_A 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDAN 551 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHH
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChH
Confidence 57899999999999999999999999999875 56687 7899999999999999999999999999765 55889
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHH
Q 037911 522 ICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMF 565 (609)
Q Consensus 522 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 565 (609)
+|..++.+|.+.|++++|.+.++++.+.. +.+...+..+..+|
T Consensus 552 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 552 VHTAIALVYLHKKIPGLAITHLHESLAIS-PNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 99999999999999999999999999873 33456666666554
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=263.54 Aligned_cols=206 Identities=17% Similarity=0.165 Sum_probs=159.1
Q ss_pred HHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC---------hH
Q 037911 188 ESFKTFRKTLDVGFQPSIV-SCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGD---------VD 257 (609)
Q Consensus 188 ~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~---------~~ 257 (609)
.+..+.+++.+.+....+. .++.+|++|++.|++++|.++|++|.+.|+.||..||+.||.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 3445556666666555443 5778888888888888888888888888888888888888888877654 57
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037911 258 KVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMV 337 (609)
Q Consensus 258 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 337 (609)
+|.++|++|.+.|+.||..+|+++|.+|++.|++++|+++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 78888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcc
Q 037911 338 HRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKE 393 (609)
Q Consensus 338 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 393 (609)
+.|+.||..+|+.||.+|++.|++++|.+++++|.+.|..|+..||+.++..|+..
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 88888888888888888888888888888888888888888888888888877653
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-27 Score=235.25 Aligned_cols=382 Identities=14% Similarity=0.019 Sum_probs=186.5
Q ss_pred HHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 037911 133 VHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLL 212 (609)
Q Consensus 133 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll 212 (609)
+..+.+.|++++|.+.+..+.+. .|.+...+..+.. .+...|++++|...++...+.. +.+..+|..+.
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~l~~-------~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg 74 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ---EPDNTGVLLLLSS-------IHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLG 74 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHH
Confidence 34444555555555555555543 2334444444444 4555555555555555555432 34455555555
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHh
Q 037911 213 NGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLN 292 (609)
Q Consensus 213 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 292 (609)
.++.+.|++++|.+.|+++.+.. +.+..+|..+..++.+.|++++|.+.++++.+.. +.+...+..+...+...|+++
T Consensus 75 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 152 (388)
T 1w3b_A 75 NVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLE 152 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHH
Confidence 55555555555555555554421 2223445555555555555555555555555442 112333444445555555555
Q ss_pred HHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 037911 293 DAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMM 372 (609)
Q Consensus 293 ~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 372 (609)
+|.+.|+++.+..+. +..+|..+...+...|++++|...|+++.+.+ +.+...|..+...+...|++++|...+++..
T Consensus 153 ~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 230 (388)
T 1w3b_A 153 EAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRAL 230 (388)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555555543222 34455555555555555555555555555432 1123444445555555555555555555544
Q ss_pred HCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 037911 373 GNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEI 452 (609)
Q Consensus 373 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 452 (609)
+.. +.+..++..+...+.+.|++++|+..++++.+.+ +.+..+
T Consensus 231 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------------------------------p~~~~~ 273 (388)
T 1w3b_A 231 SLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ------------------------------------PHFPDA 273 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC------------------------------------SSCHHH
T ss_pred hhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------------------------------------CCCHHH
Confidence 331 1123444444444555555555555554444432 223344
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 037911 453 YNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCM 532 (609)
Q Consensus 453 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 532 (609)
|..+...+.+.|++++|.+.|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..++.++.+
T Consensus 274 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 351 (388)
T 1w3b_A 274 YCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQ 351 (388)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHH
Confidence 4455555555555555555555554432 1344455555555555555555555555554321 2234455555555555
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcC
Q 037911 533 EKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDG 569 (609)
Q Consensus 533 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 569 (609)
.|++++|.+.++++.+.. +.+...|..+...+...|
T Consensus 352 ~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 352 QGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp TTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHcc
Confidence 555555555555555431 112344555555444443
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-30 Score=261.51 Aligned_cols=207 Identities=14% Similarity=0.240 Sum_probs=181.2
Q ss_pred HHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC---------H
Q 037911 222 DQCWQVYEEMGRIGICPNT-HTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGR---------L 291 (609)
Q Consensus 222 ~~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---------~ 291 (609)
..+..+.+++.+.++.... ..++.+|.+|++.|++++|.++|++|.+.|+.||..+||.||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3455666777777766554 45888999999999999999999999999999999999999999987664 6
Q ss_pred hHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 037911 292 NDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEM 371 (609)
Q Consensus 292 ~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 371 (609)
++|.++|++|.+.|+.||..||+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 037911 372 MGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQD 428 (609)
Q Consensus 372 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 428 (609)
.+.|+.||..||+.||.+|++.|++++|.+++++|.+.+..|+..||+.++..++..
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999988764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-27 Score=234.29 Aligned_cols=375 Identities=13% Similarity=0.042 Sum_probs=255.0
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDK 258 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (609)
.+.+.|++++|++.++++.+.. +.+...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|++++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 4567777777777777776643 3445555566666666777777777766665532 3455666666666666666666
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037911 259 VNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVH 338 (609)
Q Consensus 259 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 338 (609)
|...|+++.+.. +.+..+|..+..++.+.|++++|++.|+++.+.++. +...+..+...+...|++++|.+.|+++.+
T Consensus 86 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 86 AIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 666666666542 223445666666666666666666666666554322 233444555555555666666665555554
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 037911 339 RGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIY 418 (609)
Q Consensus 339 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 418 (609)
.. +.+..+|..+...+...|++++|...|++++ +.+ +.+...+
T Consensus 164 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-----------------------------------~~~-p~~~~~~ 206 (388)
T 1w3b_A 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAV-----------------------------------TLD-PNFLDAY 206 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH-----------------------------------HHC-TTCHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----------------------------------hcC-CCcHHHH
Confidence 31 1234445555555555555555555555544 433 1234455
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcC
Q 037911 419 DYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGI 498 (609)
Q Consensus 419 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 498 (609)
..+...+...|++++|...+++..... +.+..++..+...+.+.|++++|...|+++.+.+. .+..+|..+..++.+.
T Consensus 207 ~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~ 284 (388)
T 1w3b_A 207 INLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEK 284 (388)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHc
Confidence 555555666666666666666654432 34677888999999999999999999999998653 3577899999999999
Q ss_pred CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHH
Q 037911 499 GRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQ 578 (609)
Q Consensus 499 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 578 (609)
|++++|+..++++.+.. +.+..++..++..+.+.|++++|.+.++++.+.. +.+..++..++.+|.+.|++++|.+.|
T Consensus 285 g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 362 (388)
T 1w3b_A 285 GSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHY 362 (388)
T ss_dssp SCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999853 6688899999999999999999999999998752 335678999999999999999999999
Q ss_pred HHHHHcCCCCChh-hHHHHHHHH
Q 037911 579 KRFLRLGFAPNNL-TCKYMIHSL 600 (609)
Q Consensus 579 ~~m~~~g~~p~~~-~~~~ll~~~ 600 (609)
+++++ +.|+.. .+..+-..+
T Consensus 363 ~~a~~--~~p~~~~a~~~lg~~~ 383 (388)
T 1w3b_A 363 KEAIR--ISPTFADAYSNMGNTL 383 (388)
T ss_dssp HHHHT--TCTTCHHHHHHHHHHH
T ss_pred HHHHh--hCCCCHHHHHhHHHHH
Confidence 99995 466644 444443333
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=4e-24 Score=220.94 Aligned_cols=440 Identities=10% Similarity=-0.042 Sum_probs=242.4
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCH
Q 037911 126 SSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSI 205 (609)
Q Consensus 126 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 205 (609)
...+...+..+.+.|++++|+..|+++++.. |+...+..+.. +|.+.|++++|+..|+++++.+ +.+.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~la~-------~~~~~g~~~~A~~~~~~al~~~-p~~~ 73 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK----EDPVFYSNLSA-------CYVSVGDLKKVVEMSTKALELK-PDYS 73 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC----CCHHHHHHHHH-------HHHHHTCHHHHHHHHHHHHHHC-SCCH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC----ccHHHHHhHHH-------HHHHHhhHHHHHHHHHHHhccC-hHHH
Confidence 4456667777777777777777777777652 24666666666 7777777777777777777654 4566
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 037911 206 VSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSY 285 (609)
Q Consensus 206 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 285 (609)
.+|..+..++...|++++|...|+++.+.+ +++......++..+........+.+.+..+...+..|+...+..-....
T Consensus 74 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 152 (514)
T 2gw1_A 74 KVLLRRASANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERK 152 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC-----------------------
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHH
Confidence 677777777777777777777777777654 3344444444444444333333333332222221111111111100000
Q ss_pred HhcCCHhHHHHHHHHHhhCCc---------cCCHhhHHHHHHHHHh---cCCHHHHHHHHHHHHH-----CCC-------
Q 037911 286 CKKGRLNDAFYLYRIMYRRNV---------LPDLVTYTTLMNGLCK---EGKVREAHQLFHRMVH-----RGL------- 341 (609)
Q Consensus 286 ~~~g~~~~a~~~~~~~~~~~~---------~p~~~~~~~ll~~~~~---~~~~~~a~~~~~~m~~-----~g~------- 341 (609)
...........+...+..... ..+...+......+.. .|++++|..+|+++.+ ...
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 232 (514)
T 2gw1_A 153 DKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKL 232 (514)
T ss_dssp ----CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHH
T ss_pred hhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcccccc
Confidence 001111111111111111100 0112333333333333 5666666666666655 211
Q ss_pred -CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 037911 342 -SPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDY 420 (609)
Q Consensus 342 -~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 420 (609)
+.+...+..+...+...|++++|...++++.+.. |+...+..+...+...|++++|+..++++.+.. +.+...+..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 309 (514)
T 2gw1_A 233 KEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYH 309 (514)
T ss_dssp HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHH
T ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHH
Confidence 1123455556666666666666666666666543 225556666666666666666666666666554 224556666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCC
Q 037911 421 LIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGR 500 (609)
Q Consensus 421 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 500 (609)
+...+...|++++|...+++..... +.+...+..+...+...|++++|..+++++.+... .+..++..+...+...|+
T Consensus 310 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~ 387 (514)
T 2gw1_A 310 RGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKND 387 (514)
T ss_dssp HHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCC
Confidence 6666666666666666666665543 23455666666666677777777777776665421 234566666666667777
Q ss_pred HhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHc---cCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHH
Q 037911 501 SGEAVSLMDEMLESGM-LPD----SQICRVLINGYCM---EKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLS 572 (609)
Q Consensus 501 ~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 572 (609)
+++|...++++.+... .++ ...+..+...+.. .|++++|...++.+.+.. +.+...+..++.+|.+.|+++
T Consensus 388 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~ 466 (514)
T 2gw1_A 388 FDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDID 466 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHH
Confidence 7777777766654311 111 2356666666666 677777777777666552 224456666666777777777
Q ss_pred HHHHHHHHHHHc
Q 037911 573 KLMELQKRFLRL 584 (609)
Q Consensus 573 ~A~~~~~~m~~~ 584 (609)
+|.+.|+++++.
T Consensus 467 ~A~~~~~~a~~~ 478 (514)
T 2gw1_A 467 EAITLFEESADL 478 (514)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 777777776654
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.1e-23 Score=214.28 Aligned_cols=435 Identities=12% Similarity=-0.005 Sum_probs=309.2
Q ss_pred HHHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccc
Q 037911 95 ISRVLLRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTE 174 (609)
Q Consensus 95 ~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (609)
..+......|+++.|+..|+.+... .|++..|..++.++...|++++|...++++++. .|.+...+..++.
T Consensus 11 ~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~--- 81 (514)
T 2gw1_A 11 DKGNQFFRNKKYDDAIKYYNWALEL---KEDPVFYSNLSACYVSVGDLKKVVEMSTKALEL---KPDYSKVLLRRAS--- 81 (514)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CSCCHHHHHHHHH---
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhc---CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhcc---ChHHHHHHHHHHH---
Confidence 3445556678999999999999974 368999999999999999999999999999987 4667788888888
Q ss_pred cchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 037911 175 DCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNG 254 (609)
Q Consensus 175 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 254 (609)
.|...|++++|+..|+++.+.+ +++......++..+........+.+.+..+...+..|+...+..-........
T Consensus 82 ----~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (514)
T 2gw1_A 82 ----ANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQE 156 (514)
T ss_dssp ----HHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------
T ss_pred ----HHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhcc
Confidence 8999999999999999999876 44555555555555554444444444443333222222221111111111111
Q ss_pred ChHHHHHHHHHHHHcCC---------CCCHHhHHHHHHHHHh---cCCHhHHHHHHHHHhh-----CCc--------cCC
Q 037911 255 DVDKVNGFLEKIEEEGF---------DPDLVTYNTLISSYCK---KGRLNDAFYLYRIMYR-----RNV--------LPD 309 (609)
Q Consensus 255 ~~~~a~~~~~~~~~~~~---------~~~~~~~~~li~~~~~---~g~~~~a~~~~~~~~~-----~~~--------~p~ 309 (609)
.......+...+..... +.+...+......+.. .|++++|+..|+++.+ ... ..+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (514)
T 2gw1_A 157 NLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKL 236 (514)
T ss_dssp CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHH
T ss_pred CCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHH
Confidence 11111111111111111 1124444444444554 7888888888888877 311 123
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHH
Q 037911 310 LVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQG 389 (609)
Q Consensus 310 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (609)
..++..+...+...|++++|..+++++.+.. |+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 237 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 313 (514)
T 2gw1_A 237 AISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQM 313 (514)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHH
Confidence 4567778888888899999999998888764 337778888888888899999999998888753 3356778888888
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 037911 390 YGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADA 469 (609)
Q Consensus 390 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 469 (609)
+...|++++|+..++++.+... .+...+..+...+...|++++|...++++.... +.+...+..+...+.+.|++++|
T Consensus 314 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 391 (514)
T 2gw1_A 314 NFILQNYDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKA 391 (514)
T ss_dssp HHHTTCTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHH
Confidence 8889999999999988887753 356778888888888999999999888886543 34567888888999999999999
Q ss_pred HHHHHHHHHCCCC-CC----HHHHHHHHHHHhc---CCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 037911 470 LLLKDEMVDRNIK-PS----LSTYRALICCFCG---IGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEA 541 (609)
Q Consensus 470 ~~~~~~~~~~~~~-p~----~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 541 (609)
...++++.+.... ++ ...+..+..++.. .|++++|...++++.+.. +.+..++..+...+.+.|++++|..
T Consensus 392 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 470 (514)
T 2gw1_A 392 LKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAIT 470 (514)
T ss_dssp HHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999988764211 11 3478888888988 999999999999998753 4467788899999999999999999
Q ss_pred HHHHHHHc
Q 037911 542 LLGFFAKK 549 (609)
Q Consensus 542 ~~~~~~~~ 549 (609)
.++++.+.
T Consensus 471 ~~~~a~~~ 478 (514)
T 2gw1_A 471 LFEESADL 478 (514)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999877
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.93 E-value=8.7e-23 Score=212.18 Aligned_cols=433 Identities=9% Similarity=-0.027 Sum_probs=241.2
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCH
Q 037911 126 SSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSI 205 (609)
Q Consensus 126 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 205 (609)
...|..++..+.+.|++++|...|+++++. .|.+...+..+.. .|.+.|++++|++.|+++.+.+ +.+.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~-------~~~~~g~~~~A~~~~~~al~~~-p~~~ 93 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIEL---DPNEPVFYSNISA-------CYISTGDLEKVIEFTTKALEIK-PDHS 93 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHH---CTTCHHHHHHHHH-------HHHHHTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhh---CCCCcHHHHHHHH-------HHHHcCCHHHHHHHHHHHHhcC-CchH
Confidence 445666677777777777777777777765 3455666666666 6777777777777777777654 4566
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC--CCCHHhHHHHHH
Q 037911 206 VSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGF--DPDLVTYNTLIS 283 (609)
Q Consensus 206 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~ 283 (609)
.++..+..++...|++++|...|+.+.. .|+.. ...+..+...+...+|...++++..... .+........+.
T Consensus 94 ~~~~~la~~~~~~g~~~~A~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~ 168 (537)
T 3fp2_A 94 KALLRRASANESLGNFTDAMFDLSVLSL---NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLA 168 (537)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhc---CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHH
Confidence 6777777777777777777777753321 22211 1223344445555667777776654310 001111122233
Q ss_pred HHHhcCCHhHHHHHHHHHhhCCccCCHh-hHHHHHHHHH--------hcCCHHHHHHHHHHHHHCCCCCC--------HH
Q 037911 284 SYCKKGRLNDAFYLYRIMYRRNVLPDLV-TYTTLMNGLC--------KEGKVREAHQLFHRMVHRGLSPD--------IV 346 (609)
Q Consensus 284 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~ll~~~~--------~~~~~~~a~~~~~~m~~~g~~p~--------~~ 346 (609)
.+....+.+.+...+...... .+... ....+...+. ..|++++|..+++++.+. .|+ ..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~ 244 (537)
T 3fp2_A 169 SFFGIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAAL 244 (537)
T ss_dssp HHHHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHH
T ss_pred HHHHhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHH
Confidence 344444544444433322221 11111 1111111111 123566666666666654 222 22
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 037911 347 SYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALC 426 (609)
Q Consensus 347 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 426 (609)
++..+...+...|++++|...++++.+. .|+...+..+...+...|++++|+..++++.+.. +.+..++..+...+.
T Consensus 245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 321 (537)
T 3fp2_A 245 ALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYF 321 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHH
Confidence 3445555566666667777777666654 3445566666666666677777777776666654 234566666666666
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHH
Q 037911 427 QDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVS 506 (609)
Q Consensus 427 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 506 (609)
..|++++|...+++..... +.+...+..+...+...|++++|..+++++.+... .+...+..+...+...|++++|..
T Consensus 322 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~ 399 (537)
T 3fp2_A 322 ILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP-TLPEVPTFFAEILTDRGDFDTAIK 399 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHH
Confidence 6777777777666664433 23445666666666677777777777766665432 334566666666666777777777
Q ss_pred HHHHHHHCC-----CCCCHHHHHHHHHHHHcc----------CCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCH
Q 037911 507 LMDEMLESG-----MLPDSQICRVLINGYCME----------KDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDL 571 (609)
Q Consensus 507 ~~~~~~~~~-----~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 571 (609)
.++++.+.. .......+..+...+... |++++|...++++.+.. +.+...+..+..+|.+.|++
T Consensus 400 ~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~ 478 (537)
T 3fp2_A 400 QYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKI 478 (537)
T ss_dssp HHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccH
Confidence 776665421 111122233444555555 67777777777666552 23445666666777777777
Q ss_pred HHHHHHHHHHHHc
Q 037911 572 SKLMELQKRFLRL 584 (609)
Q Consensus 572 ~~A~~~~~~m~~~ 584 (609)
++|.+.|+++++.
T Consensus 479 ~~A~~~~~~al~~ 491 (537)
T 3fp2_A 479 DEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 7777777776654
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=6.4e-22 Score=200.74 Aligned_cols=300 Identities=12% Similarity=0.082 Sum_probs=193.6
Q ss_pred CCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCC
Q 037911 124 PTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQP 203 (609)
Q Consensus 124 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 203 (609)
.++..+..++..+.+.|++++|+.+|+++++. .|.+...+..++. .|...|++++|+..|+++.+.+ +.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~l~~-------~~~~~g~~~~A~~~~~~al~~~-p~ 92 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDG---DPDNYIAYYRRAT-------VFLAMGKSKAALPDLTKVIQLK-MD 92 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCccHHHHHHHHH-------HHHHCCCHHHHHHHHHHHHhcC-CC
Confidence 35677777888888888888888888888765 4456777777777 7888888888888888887765 45
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH----HHHHHH------------HHHHHHcCChHHHHHHHHHHH
Q 037911 204 SIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNT----HTFNIL------------THVFCKNGDVDKVNGFLEKIE 267 (609)
Q Consensus 204 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~l------------~~~~~~~g~~~~a~~~~~~~~ 267 (609)
+..++..+..++.+.|++++|.+.|+++.+. .|+. ..+..+ ...+...|++++|...++++.
T Consensus 93 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 170 (450)
T 2y4t_A 93 FTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKIL 170 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6777888888888888888888888888764 3433 444444 333666777777777777776
Q ss_pred HcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HH
Q 037911 268 EEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPD-IV 346 (609)
Q Consensus 268 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~ 346 (609)
+.. +.+..++..+..+|.+.|++++|++.|+++.+.... +..+|..+...+...|++++|...|+++.+. .|+ ..
T Consensus 171 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~ 246 (450)
T 2y4t_A 171 EVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKR 246 (450)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred HhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHH
Confidence 653 335666777777777777777777777777654322 5666777777777777777777777777654 232 23
Q ss_pred HHHHH------------HHHHHHcCChHHHHHHHHHHHHCCCccC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 037911 347 SYNTL------------IFAYCKEGKMQESKSLLYEMMGNGIYPD-----TFTCQIIVQGYGKEGRLLSALNLVVELQRF 409 (609)
Q Consensus 347 ~~~~l------------i~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 409 (609)
.+..+ ...+.+.|++++|...|+++.+. .|+ ...+..+...+.+.|++++|+..++++.+.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 324 (450)
T 2y4t_A 247 CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM 324 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 33322 45555666666666666665543 222 234555555555556666666655555544
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037911 410 GVSISRDIYDYLIVALCQDNRPFAATSLLERIGQ 443 (609)
Q Consensus 410 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 443 (609)
. +.+...+..+..+|...|++++|...+++...
T Consensus 325 ~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 325 E-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred C-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 2 22445555555555555555555555555544
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=6.3e-22 Score=200.78 Aligned_cols=315 Identities=14% Similarity=0.026 Sum_probs=218.9
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 037911 190 FKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEE 269 (609)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 269 (609)
...+.++.... +.+...+..+...+.+.|++++|..+|+++.+.. +.+..++..+..++...|++++|...++++.+.
T Consensus 12 ~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 89 (450)
T 2y4t_A 12 DLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL 89 (450)
T ss_dssp ------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 33344444332 5567788888999999999999999999987752 456888888999999999999999999998887
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCH---hhHHHH------------HHHHHhcCCHHHHHHHHH
Q 037911 270 GFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDL---VTYTTL------------MNGLCKEGKVREAHQLFH 334 (609)
Q Consensus 270 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~l------------l~~~~~~~~~~~a~~~~~ 334 (609)
+ +.+..++..+..+|.+.|++++|.+.|+++.+.+.. +. ..+..+ ...+...|++++|...|+
T Consensus 90 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 167 (450)
T 2y4t_A 90 K-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLD 167 (450)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5 335778888999999999999999999999876432 33 455544 344788889999999998
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 037911 335 RMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSIS 414 (609)
Q Consensus 335 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 414 (609)
++.+.. +.+...+..+..+|.+.|++++|..+|+++.+.. +.+..++..+...|...|++++|+..++++.+... .+
T Consensus 168 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~ 244 (450)
T 2y4t_A 168 KILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DH 244 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TC
T ss_pred HHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-Ch
Confidence 888753 3467788888888889999999999998887652 33677888888888889999999998888877642 23
Q ss_pred HHHHHHH------------HHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037911 415 RDIYDYL------------IVALCQDNRPFAATSLLERIGQDGYVPS----LEIYNELMESLCKCDSVADALLLKDEMVD 478 (609)
Q Consensus 415 ~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 478 (609)
...+..+ ...+...|++++|...++++..... .+ ...+..+...+.+.|++++|+..++++.+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 323 (450)
T 2y4t_A 245 KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP-SIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ 323 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-SSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3333333 5555666666666666666644221 11 23455556666666666666666666554
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHH
Q 037911 479 RNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLE 513 (609)
Q Consensus 479 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 513 (609)
.. +.+..+|..+..+|...|++++|...++++.+
T Consensus 324 ~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 324 ME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 32 12455566666666666666666666666654
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.6e-21 Score=201.01 Aligned_cols=427 Identities=13% Similarity=0.036 Sum_probs=318.2
Q ss_pred HHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhcc
Q 037911 94 EISRVLLRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCT 173 (609)
Q Consensus 94 ~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (609)
...+......|+++.|+..|+.+... .+.++.+|..++.++...|++++|++.++++++. .|.+...+..+..
T Consensus 29 ~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~-- 101 (537)
T 3fp2_A 29 KNRGNHFFTAKNFNEAIKYYQYAIEL--DPNEPVFYSNISACYISTGDLEKVIEFTTKALEI---KPDHSKALLRRAS-- 101 (537)
T ss_dssp HHHHHHHHHTTCCC-CHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH--
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCchHHHHHHHHH--
Confidence 33445566779999999999999974 2457899999999999999999999999999987 4667888888888
Q ss_pred ccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC------CCCCHHHHHHHH
Q 037911 174 EDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIG------ICPNTHTFNILT 247 (609)
Q Consensus 174 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~------~~~~~~~~~~l~ 247 (609)
.|...|++++|+..|+ ..... |+. .+..+..+...+...+|...++++.... ..|+.. .+
T Consensus 102 -----~~~~~g~~~~A~~~~~-~~~~~--~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~----~~ 167 (537)
T 3fp2_A 102 -----ANESLGNFTDAMFDLS-VLSLN--GDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNT----SL 167 (537)
T ss_dssp -----HHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHH----HH
T ss_pred -----HHHHcCCHHHHHHHHH-HHhcC--CCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHh----HH
Confidence 8999999999999997 44322 222 2223445556666788999999986531 223333 33
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHH-hHHHHHHHHHh--------cCCHhHHHHHHHHHhhCCccCC-------Hh
Q 037911 248 HVFCKNGDVDKVNGFLEKIEEEGFDPDLV-TYNTLISSYCK--------KGRLNDAFYLYRIMYRRNVLPD-------LV 311 (609)
Q Consensus 248 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~--------~g~~~~a~~~~~~~~~~~~~p~-------~~ 311 (609)
..+....+.+.+...+...... .+... ....+...+.. .|++++|+.+|+++.+.... + ..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~ 244 (537)
T 3fp2_A 168 ASFFGIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAAL 244 (537)
T ss_dssp HHHHHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHH
T ss_pred HHHHHhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHH
Confidence 4455566666655554443322 22221 22222222222 25789999999999876433 2 23
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHH
Q 037911 312 TYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYG 391 (609)
Q Consensus 312 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 391 (609)
++..+...+...|++++|...++++.+. .|+...+..+...+...|++++|...++++.+.. +.+..++..+...+.
T Consensus 245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 321 (537)
T 3fp2_A 245 ALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYF 321 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHH
Confidence 4667778888999999999999999886 5667888888999999999999999999988763 336788999999999
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037911 392 KEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALL 471 (609)
Q Consensus 392 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 471 (609)
..|++++|+..++++.+... .+...+..+..++...|++++|...+++..... +.+...+..+...+...|++++|..
T Consensus 322 ~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 399 (537)
T 3fp2_A 322 ILQDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIK 399 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999999988753 356788889999999999999999999986654 4567788899999999999999999
Q ss_pred HHHHHHHCC-----CCCCHHHHHHHHHHHhcC----------CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 037911 472 LKDEMVDRN-----IKPSLSTYRALICCFCGI----------GRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDV 536 (609)
Q Consensus 472 ~~~~~~~~~-----~~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 536 (609)
.|+++.+.. .......+..+..++... |++++|...++++.+.. +.+...+..+...|.+.|++
T Consensus 400 ~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~ 478 (537)
T 3fp2_A 400 QYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKI 478 (537)
T ss_dssp HHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccH
Confidence 999987542 111223344455667777 99999999999998753 45678899999999999999
Q ss_pred HHHHHHHHHHHHcC
Q 037911 537 NKAEALLGFFAKKF 550 (609)
Q Consensus 537 ~~A~~~~~~~~~~~ 550 (609)
++|.+.|+++.+..
T Consensus 479 ~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 479 DEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999773
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-18 Score=171.05 Aligned_cols=329 Identities=11% Similarity=0.038 Sum_probs=185.0
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCC
Q 037911 125 TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPS 204 (609)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 204 (609)
++..+..++..+...|++++|...|+++++. .|.+...+..+.. .|...|++++|+..|+++.+.. +.+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~a~-------~~~~~~~~~~A~~~~~~~~~~~-~~~ 70 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDG---DPDNYIAYYRRAT-------VFLAMGKSKAALPDLTKVIALK-MDF 70 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH-------HHHHHTCHHHHHHHHHHHHHHC-TTC
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CcccHHHHHHHHH-------HHHHccCHHHHHHHHHHHHHhC-CCc
Confidence 3556777788888888888888888888765 4456667777776 7888888888888888887754 446
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC----CHHHHHHH------------HHHHHHcCChHHHHHHHHHHHH
Q 037911 205 IVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICP----NTHTFNIL------------THVFCKNGDVDKVNGFLEKIEE 268 (609)
Q Consensus 205 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~----~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~ 268 (609)
...|..+...+...|++++|...|+++.+. .| +...+..+ ...+...|++++|.+.++++.+
T Consensus 71 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 148 (359)
T 3ieg_A 71 TAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILE 148 (359)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 677777888888888888888888888764 34 33333333 3445555555555555555554
Q ss_pred cCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 037911 269 EGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSY 348 (609)
Q Consensus 269 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 348 (609)
.. +.+...+..+...+...|++++|+..++++.+.... +..++..+...+...|++++|...+++..+.. +.+...+
T Consensus 149 ~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~ 225 (359)
T 3ieg_A 149 VC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCF 225 (359)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred hC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHH
Confidence 42 223444555555555555555555555555544322 44445555555555555555555555554431 1111111
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHH
Q 037911 349 NTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISR----DIYDYLIVA 424 (609)
Q Consensus 349 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~ll~~ 424 (609)
..+... . .......+...+.+.|++++|+..++++.+.... +. ..+..+..+
T Consensus 226 ~~~~~~-----------------~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~ 281 (359)
T 3ieg_A 226 AHYKQV-----------------K------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHC 281 (359)
T ss_dssp HHHHHH-----------------H------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHH
T ss_pred HHHHHH-----------------H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHH
Confidence 110000 0 0000112234455555666666655555554322 22 123344555
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037911 425 LCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCF 495 (609)
Q Consensus 425 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 495 (609)
+...|++++|...+++..... +.+..++..+...+.+.|++++|...|+++.+... -+...+..+..+.
T Consensus 282 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 282 FSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE-NDQQIREGLEKAQ 350 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChHHHHHHHHHH
Confidence 666666666666666654432 33556666666666666777777777766665431 2234444444443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.8e-17 Score=168.06 Aligned_cols=364 Identities=12% Similarity=0.017 Sum_probs=207.4
Q ss_pred HHHHHHHhhhcCCCCCCHHhHHHHHHHHHh----CCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHH--
Q 037911 109 ALTFFNWVKNDLEIKPTSSNYCLIVHILAW----NNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVK-- 182 (609)
Q Consensus 109 A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-- 182 (609)
++..+..+.. ..++.++..+...|.. .+++++|...|+.+.+. .+...+..+.. .|..
T Consensus 26 ~~~~~~~~a~----~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~-------~y~~g~ 89 (490)
T 2xm6_A 26 NLEQLKQKAE----SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-----GYTPAEYVLGL-------RYMNGE 89 (490)
T ss_dssp CHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHH-------HHHHTS
T ss_pred HHHHHHHHHH----CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-----CCHHHHHHHHH-------HHHcCC
Confidence 3455554443 3466777777777776 67777777777777754 23445555555 5666
Q ss_pred --hCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----
Q 037911 183 --VGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLK----LNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCK---- 252 (609)
Q Consensus 183 --~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~---- 252 (609)
.+++++|++.|++..+.| +...+..|...|.. .+++++|...|++..+.| +...+..|...|..
T Consensus 90 g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~ 163 (490)
T 2xm6_A 90 GVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGV 163 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSS
T ss_pred CCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCC
Confidence 677777777777777654 55566666666666 567777777777766643 45555666666665
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh----cCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHh----cC
Q 037911 253 NGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCK----KGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCK----EG 324 (609)
Q Consensus 253 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~ 324 (609)
.++.++|.+.|++..+.| +...+..+...|.. .++.++|++.|++..+.| +...+..+...+.. .+
T Consensus 164 ~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~ 237 (490)
T 2xm6_A 164 TRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQ 237 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 566666766666666553 45556666666665 566666666666666543 34455555555554 55
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcc-----CC
Q 037911 325 KVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCK----EGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKE-----GR 395 (609)
Q Consensus 325 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~ 395 (609)
++++|..+|++..+.| +...+..+...|.. .++.++|..+|++..+.| +...+..+...|... ++
T Consensus 238 ~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~ 311 (490)
T 2xm6_A 238 DYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKN 311 (490)
T ss_dssp CHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCC
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCC
Confidence 6666666666665543 33444445555554 555666666665555442 233444444444443 45
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHH
Q 037911 396 LLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCD---SVADALLL 472 (609)
Q Consensus 396 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~ 472 (609)
+++|+..+++..+.+ +...+..+...|...| ++++|.++
T Consensus 312 ~~~A~~~~~~a~~~~--------------------------------------~~~a~~~lg~~y~~~g~~~~~~~A~~~ 353 (490)
T 2xm6_A 312 REQAISWYTKSAEQG--------------------------------------DATAQANLGAIYFRLGSEEEHKKAVEW 353 (490)
T ss_dssp HHHHHHHHHHHHHTT--------------------------------------CHHHHHHHHHHHHHSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC--------------------------------------CHHHHHHHHHHHHhCCCcccHHHHHHH
Confidence 555555555544432 2233344444444333 45555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhc----CCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHH
Q 037911 473 KDEMVDRNIKPSLSTYRALICCFCG----IGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCM----EKDVNKAEALLG 544 (609)
Q Consensus 473 ~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~ 544 (609)
|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..|...|.. .++.++|...|+
T Consensus 354 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 427 (490)
T 2xm6_A 354 FRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFD 427 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 55555542 34455555555554 455555555555555543 34455555555555 555666666665
Q ss_pred HHHHcC
Q 037911 545 FFAKKF 550 (609)
Q Consensus 545 ~~~~~~ 550 (609)
+..+.+
T Consensus 428 ~A~~~~ 433 (490)
T 2xm6_A 428 TASTND 433 (490)
T ss_dssp HHHHHH
T ss_pred HHHHCC
Confidence 555543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.5e-18 Score=168.35 Aligned_cols=322 Identities=9% Similarity=0.034 Sum_probs=208.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHH
Q 037911 240 THTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNG 319 (609)
Q Consensus 240 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~ 319 (609)
...+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|+..|+++.+.... +...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHH
Confidence 4556666777777777777777777777653 234666777777777777777777777777765432 45666777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCC
Q 037911 320 LCKEGKVREAHQLFHRMVHRGLSP----DIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGR 395 (609)
Q Consensus 320 ~~~~~~~~~a~~~~~~m~~~g~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 395 (609)
+...|++++|...|+++.+. .| +...+..+...+. ...+..+...+...|+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGAD 135 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTC
T ss_pred HHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccC
Confidence 77777777777777777664 33 2222322211000 0112223455566666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037911 396 LLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDE 475 (609)
Q Consensus 396 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 475 (609)
+++|+..++++.+.. +.+...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+++
T Consensus 136 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 213 (359)
T 3ieg_A 136 YTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRE 213 (359)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 666666666666554 2355666666666666676666666666665543 44566667777777777777777777777
Q ss_pred HHHCCCCCCHHHHH------------HHHHHHhcCCCHhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHH
Q 037911 476 MVDRNIKPSLSTYR------------ALICCFCGIGRSGEAVSLMDEMLESGMLPDS----QICRVLINGYCMEKDVNKA 539 (609)
Q Consensus 476 ~~~~~~~p~~~~~~------------~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A 539 (609)
..+... .+...+. .+...+...|++++|...++++.+.. +.+. ..+..+..++.+.|++++|
T Consensus 214 a~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 214 CLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp HHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhhCc-cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 665432 2222222 22556778888888888888888643 2222 2345577888888899999
Q ss_pred HHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 037911 540 EALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKY 595 (609)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 595 (609)
...++.+.+.. +.+...|..++.+|...|++++|.+.|+++++. .|+......
T Consensus 292 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~ 344 (359)
T 3ieg_A 292 IRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIRE 344 (359)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHH
Confidence 99888888763 335678888888888899999999999988844 566544333
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.1e-17 Score=165.08 Aligned_cols=344 Identities=13% Similarity=0.088 Sum_probs=216.5
Q ss_pred hCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cC
Q 037911 183 VGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLK----LNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCK----NG 254 (609)
Q Consensus 183 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g 254 (609)
.+++++|+..|++..+.| +..++..|...|.. .++.++|.+.|++..+.| +...+..|...|.. .+
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 129 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKV 129 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 455555555555555532 34445555555554 555555555555554432 33444444444444 44
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 037911 255 DVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFH 334 (609)
Q Consensus 255 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 334 (609)
++++|...|++..+.| +...+..+...|.... ...++.++|.++|+
T Consensus 130 ~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~-------------------------------g~~~d~~~A~~~~~ 175 (490)
T 2xm6_A 130 DKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGD-------------------------------GVTRDYVMAREWYS 175 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS-------------------------------SSCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC-------------------------------CCCCCHHHHHHHHH
Confidence 4555555555444432 2333444444443300 00445555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHc----cCCHHHHHHHHHHH
Q 037911 335 RMVHRGLSPDIVSYNTLIFAYCK----EGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGK----EGRLLSALNLVVEL 406 (609)
Q Consensus 335 ~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~ 406 (609)
+..+.| +...+..+...|.. .++.++|..+|++..+.| +...+..+...|.. .+++++|+.+|++.
T Consensus 176 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a 249 (490)
T 2xm6_A 176 KAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQS 249 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 555443 34444445555544 455555555555555443 33444444444443 45566666666655
Q ss_pred HHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHH
Q 037911 407 QRFGVSISRDIYDYLIVALCQ----DNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKC-----DSVADALLLKDEMV 477 (609)
Q Consensus 407 ~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~ 477 (609)
.+.+ +...+..+...+.. .+++++|...+++..+.+ +...+..+...|... +++++|..+|++..
T Consensus 250 ~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~ 323 (490)
T 2xm6_A 250 AEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSA 323 (490)
T ss_dssp HTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHH
Confidence 5543 33444455555555 566677777777665543 455666677777766 89999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHhcCC---CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHcC
Q 037911 478 DRNIKPSLSTYRALICCFCGIG---RSGEAVSLMDEMLESGMLPDSQICRVLINGYCM----EKDVNKAEALLGFFAKKF 550 (609)
Q Consensus 478 ~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 550 (609)
+.+ +...+..+...|...| +.++|+++|++..+.+ +...+..|...|.. .+++++|...|++..+.+
T Consensus 324 ~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 324 EQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp HTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred hcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 875 5677788888887766 8899999999999864 67888899999998 899999999999999864
Q ss_pred CCCChhcHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCC
Q 037911 551 QIYDTESYNAVFNMFAE----DGDLSKLMELQKRFLRLGFA 587 (609)
Q Consensus 551 ~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~ 587 (609)
+...+..+...|.. .+++++|.++|++..+.+..
T Consensus 398 ---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 398 ---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred ---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 57788899999998 89999999999999988644
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.85 E-value=7.3e-17 Score=166.73 Aligned_cols=418 Identities=10% Similarity=0.027 Sum_probs=305.8
Q ss_pred HHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 037911 149 LCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVY 228 (609)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 228 (609)
+++.++. .|.+...+..++. +.+.|++++|..+|+++++.. +.+...|..++..+.+.|++++|..+|
T Consensus 2 le~al~~---~P~~~~~w~~l~~--------~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~ 69 (530)
T 2ooe_A 2 AEKKLEE---NPYDLDAWSILIR--------EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLF 69 (530)
T ss_dssp HHHHHHH---CTTCHHHHHHHHH--------HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhHhhh---CCCCHHHHHHHHH--------HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 4455544 5678888888885 478999999999999999864 678889999999999999999999999
Q ss_pred HHHhhCCCCCCHHHHHHHHHHH-HHcCChHHHHH----HHHHHHHc-CCCC-CHHhHHHHHHHHHh---------cCCHh
Q 037911 229 EEMGRIGICPNTHTFNILTHVF-CKNGDVDKVNG----FLEKIEEE-GFDP-DLVTYNTLISSYCK---------KGRLN 292 (609)
Q Consensus 229 ~~m~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~----~~~~~~~~-~~~~-~~~~~~~li~~~~~---------~g~~~ 292 (609)
++.... .|+...|...+... ...|+.++|.+ +|+..... |..| +...|...+..... .|+++
T Consensus 70 ~ral~~--~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 147 (530)
T 2ooe_A 70 QRCLMK--VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRIT 147 (530)
T ss_dssp HHHTTT--CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHH
T ss_pred HHHHhc--CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHH
Confidence 999885 47887777776533 35677776665 67766543 4443 46677777776654 78999
Q ss_pred HHHHHHHHHhhCCccCCHhhHHHHHHHH-------------HhcCCHHHHHHHHHHHH------HCC---CCCC------
Q 037911 293 DAFYLYRIMYRRNVLPDLVTYTTLMNGL-------------CKEGKVREAHQLFHRMV------HRG---LSPD------ 344 (609)
Q Consensus 293 ~a~~~~~~~~~~~~~p~~~~~~~ll~~~-------------~~~~~~~~a~~~~~~m~------~~g---~~p~------ 344 (609)
.|..+|++..+....+....|....... .+.++++.|..++.++. +.. +.|+
T Consensus 148 ~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~ 227 (530)
T 2ooe_A 148 AVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEA 227 (530)
T ss_dssp HHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHH
T ss_pred HHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHH
Confidence 9999999999842111123333222211 12355777877777632 221 2443
Q ss_pred --HHHHHHHHHHHHHc----CCh----HHHHHHHHHHHHCCCccCHHHHHHHHHHHHc-------cCCHH-------HHH
Q 037911 345 --IVSYNTLIFAYCKE----GKM----QESKSLLYEMMGNGIYPDTFTCQIIVQGYGK-------EGRLL-------SAL 400 (609)
Q Consensus 345 --~~~~~~li~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~A~ 400 (609)
...|...+...... ++. +.+..+|++.+.. .+.+...|..++..+.+ .|+++ +|.
T Consensus 228 ~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~ 306 (530)
T 2ooe_A 228 QQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAA 306 (530)
T ss_dssp HHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHH
Confidence 24555554333222 232 4777889998875 23467788888888775 78877 899
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037911 401 NLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPS-LEIYNELMESLCKCDSVADALLLKDEMVDR 479 (609)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 479 (609)
.++++..+.-.+-+...+..++..+.+.|++++|..+++++.... +.+ ...|...+..+.+.|++++|.++|++..+.
T Consensus 307 ~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~ 385 (530)
T 2ooe_A 307 NIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 385 (530)
T ss_dssp HHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 999999873234468889999999999999999999999998753 223 358999999999999999999999999876
Q ss_pred CCCCCHHHHHHHHH-HHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCC--h
Q 037911 480 NIKPSLSTYRALIC-CFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQ-IYD--T 555 (609)
Q Consensus 480 ~~~p~~~~~~~li~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~--~ 555 (609)
.. .+...|..... .+...|+.++|..+|+++++.. +-+...|..++..+.+.|+.++|..+|++...... .|+ .
T Consensus 386 ~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~ 463 (530)
T 2ooe_A 386 AR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG 463 (530)
T ss_dssp TT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCH
T ss_pred cC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHH
Confidence 32 22333332222 2346899999999999998753 34678899999999999999999999999997642 221 2
Q ss_pred hcHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037911 556 ESYNAVFNMFAEDGDLSKLMELQKRFLRL 584 (609)
Q Consensus 556 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 584 (609)
..|..++......|+.+.+.++++++.+.
T Consensus 464 ~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 464 EIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 37888888888999999999999999865
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.3e-18 Score=164.00 Aligned_cols=287 Identities=11% Similarity=-0.012 Sum_probs=194.3
Q ss_pred CCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCC
Q 037911 123 KPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQ 202 (609)
Q Consensus 123 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 202 (609)
+.++..+..++..+...|++++|.++++++++. .|.+...+..++. .+...|++++|+..++++.+.. +
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~-------~~~~~~~~~~A~~~~~~~~~~~-~ 87 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEK---DPFHASCLPVHIG-------TLVELNKANELFYLSHKLVDLY-P 87 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTTTHHHHHH-------HHHHHTCHHHHHHHHHHHHHHC-T
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCChhhHHHHHH-------HHHHhhhHHHHHHHHHHHHHhC-c
Confidence 445566777777777778888888888877765 3344455555555 6777788888888888777754 4
Q ss_pred CCHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHH
Q 037911 203 PSIVSCNFLLNGLLKLN-CIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTL 281 (609)
Q Consensus 203 ~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 281 (609)
.+...|..+...+...| ++++|.+.|++..+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+
T Consensus 88 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 165 (330)
T 3hym_B 88 SNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYI 165 (330)
T ss_dssp TSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHH
Confidence 45667777777777777 7777888887777643 3346667777777777788888888777777663 2234556667
Q ss_pred HHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHH
Q 037911 282 ISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRG--------LSPDIVSYNTLIF 353 (609)
Q Consensus 282 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g--------~~p~~~~~~~li~ 353 (609)
...+...|++++|.+.+++..+.... +...+..+...+...|++++|...++++.+.. .+.+..++..+..
T Consensus 166 ~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~ 244 (330)
T 3hym_B 166 GLEYGLTNNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGH 244 (330)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHH
Confidence 77777777777777777777765433 56667777777777777777777777776531 1223456677777
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037911 354 AYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVAL 425 (609)
Q Consensus 354 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 425 (609)
++...|++++|...+++..+.. +.+...+..+...+.+.|++++|...++++.+.. +.+...+..+..++
T Consensus 245 ~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 245 VCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 7777777777777777776542 2245666677777777777777777777766654 22455555555555
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-16 Score=163.52 Aligned_cols=410 Identities=11% Similarity=0.029 Sum_probs=280.4
Q ss_pred CCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCC
Q 037911 123 KPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQ 202 (609)
Q Consensus 123 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 202 (609)
+.+..+|..++. +.+.|++++|..+|+.+++. .|.+..++...+. .+.+.|++++|..+|+++++..
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~---~P~~~~~w~~~~~-------~~~~~~~~~~a~~~~~ral~~~-- 76 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQ---FPSSGRFWKLYIE-------AEIKAKNYDKVEKLFQRCLMKV-- 76 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT---CTTCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHTTTC--
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH---CCCCHHHHHHHHH-------HHHhcCCHHHHHHHHHHHHhcC--
Confidence 346777777777 36677888888888887754 5667777777777 6777788888888888877753
Q ss_pred CCHHHHHHHHHHH-HhcCChHHHHH----HHHHHhh-CCCCC-CHHHHHHHHHHHHH---------cCChHHHHHHHHHH
Q 037911 203 PSIVSCNFLLNGL-LKLNCIDQCWQ----VYEEMGR-IGICP-NTHTFNILTHVFCK---------NGDVDKVNGFLEKI 266 (609)
Q Consensus 203 ~~~~~~~~ll~~~-~~~~~~~~a~~----~~~~m~~-~~~~~-~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~ 266 (609)
|++..|...+... ...|+.+.|.+ +|++... .|..| +...|...+....+ .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 5777776666433 34566665554 6665543 24333 34566666655443 57778888888877
Q ss_pred HHcCCCCCHHhHHHHHHHH-------------HhcCCHhHHHHHHHHHh------hCC---ccCC--------HhhHHHH
Q 037911 267 EEEGFDPDLVTYNTLISSY-------------CKKGRLNDAFYLYRIMY------RRN---VLPD--------LVTYTTL 316 (609)
Q Consensus 267 ~~~~~~~~~~~~~~li~~~-------------~~~g~~~~a~~~~~~~~------~~~---~~p~--------~~~~~~l 316 (609)
.+.........|....... ...++++.|..+++++. +.. +.|+ ...|...
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred HhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 7631111122333222210 12345777777776632 221 2333 2345554
Q ss_pred HHHHHhc----CCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-------cCChH-------HHHHHHHHHHHC
Q 037911 317 MNGLCKE----GKV----REAHQLFHRMVHRGLSPDIVSYNTLIFAYCK-------EGKMQ-------ESKSLLYEMMGN 374 (609)
Q Consensus 317 l~~~~~~----~~~----~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~~~~~ 374 (609)
+...... ++. +.+..+|++.... .+.+...|..++..+.+ .|+++ +|..++++.++.
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~ 315 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 315 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH
Confidence 4332222 232 4777889888875 23467788888777765 68987 899999999863
Q ss_pred CCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 037911 375 GIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSIS-RDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIY 453 (609)
Q Consensus 375 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 453 (609)
-.+.+...|..++..+.+.|++++|..+|+++.+... .+ ...|...+..+.+.|+.++|..+|++..... +.+...|
T Consensus 316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~ 393 (530)
T 2ooe_A 316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIED-IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVY 393 (530)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHH
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccc-cCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHH
Confidence 2233578899999999999999999999999998642 23 3578888888889999999999999997653 2233333
Q ss_pred HHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCC-CCCC--HHHHHHHHHH
Q 037911 454 NELMES-LCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESG-MLPD--SQICRVLING 529 (609)
Q Consensus 454 ~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~p~--~~~~~~l~~~ 529 (609)
...+.. +...|+.++|..+|+..++.. +.+...|..++..+.+.|+.++|..+|++++..+ ..|+ ...|...+..
T Consensus 394 ~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~ 472 (530)
T 2ooe_A 394 VTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF 472 (530)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 332222 335899999999999988754 2357889999999999999999999999999863 2332 4578888888
Q ss_pred HHccCCHHHHHHHHHHHHHc
Q 037911 530 YCMEKDVNKAEALLGFFAKK 549 (609)
Q Consensus 530 ~~~~g~~~~A~~~~~~~~~~ 549 (609)
....|+.+.+.++.+++.+.
T Consensus 473 e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 473 ESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHSSCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 88899999999999998876
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=5.6e-18 Score=163.82 Aligned_cols=268 Identities=10% Similarity=-0.006 Sum_probs=120.0
Q ss_pred HHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037911 275 LVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFA 354 (609)
Q Consensus 275 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 354 (609)
...+..+...+...|++++|+++|+++.+.... +...+..++..+...|++++|..+++++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 99 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCY 99 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHH
Confidence 334444444444445555555555554443222 23334444444445555555555555544431 1233444444444
Q ss_pred HHHcC-ChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 037911 355 YCKEG-KMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFA 433 (609)
Q Consensus 355 ~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 433 (609)
+...| ++++|...++++.+.. +.+...+..+...+...|++++|+..++++.+.... +...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHH
Confidence 55555 4555555555544432 112344444444555555555555555544443211 22333334444444444444
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHhcCCCHhHHH
Q 037911 434 ATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRN--------IKPSLSTYRALICCFCGIGRSGEAV 505 (609)
Q Consensus 434 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~p~~~~~~~li~~~~~~g~~~~A~ 505 (609)
|...+++..... +.+...+..+...+...|++++|...++++.+.. ...+..++..+..++...|++++|.
T Consensus 178 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 178 AERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 444444443322 2234444445555555555555555555444321 0122334444444555555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 037911 506 SLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAK 548 (609)
Q Consensus 506 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 548 (609)
..++++.+.. +.+...+..+...+.+.|++++|.+.++++.+
T Consensus 257 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 257 DYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 5555544432 22334444445555555555555555554443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.81 E-value=4.2e-18 Score=167.53 Aligned_cols=257 Identities=12% Similarity=0.038 Sum_probs=150.4
Q ss_pred CCChhHHHH-HHHHhhhcCCCCC--CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhH
Q 037911 103 QSDSVSALT-FFNWVKNDLEIKP--TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWA 179 (609)
Q Consensus 103 ~~~~~~A~~-~f~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 179 (609)
.++++.|+. .|+.+.......| +...+..++..+...|++++|...++++++. .|.+...+..+.. .
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~-------~ 107 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ---DPKHMEAWQYLGT-------T 107 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS---CTTCHHHHHHHHH-------H
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHH-------H
Confidence 357777777 7776664322222 3566778888888888888888888888865 4556677777777 7
Q ss_pred HHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHH--------------
Q 037911 180 YVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNI-------------- 245 (609)
Q Consensus 180 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-------------- 245 (609)
|...|++++|++.|+++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+...+..
T Consensus 108 ~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 185 (368)
T 1fch_A 108 QAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSK 185 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------
T ss_pred HHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHH
Confidence 888888888888888887765 4567778888888888888888888888877643 122222211
Q ss_pred -HHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhc
Q 037911 246 -LTHVFCKNGDVDKVNGFLEKIEEEGFDP-DLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKE 323 (609)
Q Consensus 246 -l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 323 (609)
.+..+...|++++|...++++.+..... +..++..+...+...|++++|+..|+++.+.... +..+|..+...+...
T Consensus 186 ~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~ 264 (368)
T 1fch_A 186 RILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANG 264 (368)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHc
Confidence 1222225555666666666555542111 3455555555555556666666655555544222 344555555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037911 324 GKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMG 373 (609)
Q Consensus 324 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 373 (609)
|++++|...|+++.+.. +.+...+..+..+|.+.|++++|...++++.+
T Consensus 265 g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 313 (368)
T 1fch_A 265 NQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALN 313 (368)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55555555555555431 22344555555555555555555555555543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.81 E-value=9.1e-18 Score=165.12 Aligned_cols=288 Identities=13% Similarity=0.018 Sum_probs=135.6
Q ss_pred HhCCHHHHHH-HHHHHHhCCCC-C--CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChH
Q 037911 182 KVGLIRESFK-TFRKTLDVGFQ-P--SIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVD 257 (609)
Q Consensus 182 ~~g~~~~A~~-~~~~~~~~~~~-~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 257 (609)
..|++++|+. .|++..+.... | +...+..+...+.+.|++++|...|+++.+.. +.+...+..+..++...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3455566665 55554432210 1 23345556666666666666666666666542 334556666666666666666
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHH---------------HHHHHHh
Q 037911 258 KVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTT---------------LMNGLCK 322 (609)
Q Consensus 258 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~---------------ll~~~~~ 322 (609)
+|...++++.+.. +.+..++..+...+...|++++|++.++++.+.... +...+.. .+..+..
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 6666666666553 234556666666666666666666666666654322 1111111 1111124
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHH
Q 037911 323 EGKVREAHQLFHRMVHRGLSP-DIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALN 401 (609)
Q Consensus 323 ~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 401 (609)
.|++++|...|+++.+..... +..++..+...+...|++++|...++++.
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al----------------------------- 244 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAAL----------------------------- 244 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------------------------
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----------------------------
Confidence 444444444444444431110 23444444444444444444444444444
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 037911 402 LVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNI 481 (609)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 481 (609)
+.. +.+...+..+...+...|++++|...+++..... +.+...+..+...|.+.|++++|...|+++.+...
T Consensus 245 ------~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 316 (368)
T 1fch_A 245 ------SVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 316 (368)
T ss_dssp ------HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred ------HhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 332 1233344444444444444444444444443321 22344455555555555555555555555443211
Q ss_pred C----------CCHHHHHHHHHHHhcCCCHhHHHHHHH
Q 037911 482 K----------PSLSTYRALICCFCGIGRSGEAVSLMD 509 (609)
Q Consensus 482 ~----------p~~~~~~~li~~~~~~g~~~~A~~~~~ 509 (609)
. ....+|..+..++...|+.++|..+++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 317 KSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp TC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred CCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 0 013455555555555555555555544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.80 E-value=6.2e-15 Score=157.74 Aligned_cols=337 Identities=13% Similarity=0.145 Sum_probs=236.1
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDK 258 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (609)
.+...|.+++|..+|++.. -.....+.++. ..+++++|.++.++. -+..+|..+..++.+.|++++
T Consensus 1058 Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kE 1123 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKE 1123 (1630)
T ss_pred HHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHH
Confidence 6778888888888888753 12222233322 567888888888764 346777788888888888888
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037911 259 VNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVH 338 (609)
Q Consensus 259 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 338 (609)
|.+.|.+. -|...|..++.++.+.|++++|.+.|....+.. ++....+.++.+|++.+++++...+. +
T Consensus 1124 AIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~ 1191 (1630)
T 1xi4_A 1124 AIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N 1191 (1630)
T ss_pred HHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h
Confidence 88888653 367778888888888888888888888777654 23333445888888888887544332 2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 037911 339 RGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIY 418 (609)
Q Consensus 339 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 418 (609)
.++...|..+...|...|++++|..+|... ..|..+...+.+.|++++|++.+++. .+..+|
T Consensus 1192 ---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aW 1253 (1630)
T 1xi4_A 1192 ---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTW 1253 (1630)
T ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHH
Confidence 345566777888888888888888888774 36888888888888888888888875 356788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-
Q 037911 419 DYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCG- 497 (609)
Q Consensus 419 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~- 497 (609)
..+..+|...|++..|...... +..+...+..++..|.+.|.+++|+.+++..+... .-....|+-+...|++
T Consensus 1254 kev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A 1254 KEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF 1327 (1630)
T ss_pred HHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhC
Confidence 8888888888887777765543 23456667788888889999999999988776543 2334456555555554
Q ss_pred -CCCHhHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHccCCHHHHHHHH-------------HHHHHcCCCCChhc
Q 037911 498 -IGRSGEAVSLMDEMLESGMLP------DSQICRVLINGYCMEKDVNKAEALL-------------GFFAKKFQIYDTES 557 (609)
Q Consensus 498 -~g~~~~A~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~~~-------------~~~~~~~~~~~~~~ 557 (609)
-++..++.++|..-. ++++ +...|..++..|.+.|+++.|.... +..... ..|+..
T Consensus 1328 ~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~k--v~n~el 1403 (1630)
T 1xi4_A 1328 KPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANVEL 1403 (1630)
T ss_pred CHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcc--cccHHH
Confidence 456666666666543 2332 4566888888888889988887322 222211 446667
Q ss_pred HHHHHHHHHhcC
Q 037911 558 YNAVFNMFAEDG 569 (609)
Q Consensus 558 ~~~l~~~~~~~g 569 (609)
|...+.-|...+
T Consensus 1404 yykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1404 YYRAIQFYLEFK 1415 (1630)
T ss_pred HHHHHHHHHhhC
Confidence 777777666555
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.8e-14 Score=154.21 Aligned_cols=400 Identities=13% Similarity=0.124 Sum_probs=291.7
Q ss_pred HHHHHhhh-cCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHH
Q 037911 111 TFFNWVKN-DLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRES 189 (609)
Q Consensus 111 ~~f~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A 189 (609)
.+.+|... ...-..+++--...++.|...|.+.+|++++++++-.......+...-+.++. ...+. +..+.
T Consensus 969 ~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~-------tAIka-D~~Rv 1040 (1630)
T 1xi4_A 969 PLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLIL-------TAIKA-DRTRV 1040 (1630)
T ss_pred HHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHH-------HHHHh-ChhhH
Confidence 45555432 11223456666677888889999999999999988442212234444555555 34444 44555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 037911 190 FKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEE 269 (609)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 269 (609)
.+..++.... ...-+...+...|++++|..+|++.. -.....+.++. ..|++++|.++.++..
T Consensus 1041 ~eyI~kLd~~-------d~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn-- 1103 (1630)
T 1xi4_A 1041 MEYINRLDNY-------DAPDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN-- 1103 (1630)
T ss_pred HHHHHHhhhc-------cHHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC--
Confidence 5555544321 13336778888999999999999963 12222333332 7788999999998663
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 037911 270 GFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYN 349 (609)
Q Consensus 270 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 349 (609)
+..+|..+..++...|++++|++.|.+. -|...|..++..+.+.|++++|.+++....+.. ++....+
T Consensus 1104 ----~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt 1171 (1630)
T 1xi4_A 1104 ----EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVET 1171 (1630)
T ss_pred ----CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccH
Confidence 5778999999999999999999999664 277888899999999999999999999887763 3443444
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 037911 350 TLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDN 429 (609)
Q Consensus 350 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 429 (609)
.++.+|++.+++++...+. + .++...|..+...|...|++++|..+|... ..|..+..++++.|
T Consensus 1172 ~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLg 1235 (1630)
T 1xi4_A 1172 ELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLG 1235 (1630)
T ss_pred HHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhC
Confidence 5899999999988644432 2 346677888999999999999999999885 47999999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHH
Q 037911 430 RPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMD 509 (609)
Q Consensus 430 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 509 (609)
++++|.+.+++. .+..+|..+..+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++
T Consensus 1236 e~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE 1304 (1630)
T 1xi4_A 1236 EYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLE 1304 (1630)
T ss_pred CHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999876 35689999999999999999998876543 2456777899999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHcCC----CCChhcHHHHHHHHHhcCCHHHHH
Q 037911 510 EMLESGMLPDSQICRVLINGYCME--KDVNKAEALLGFFAKKFQ----IYDTESYNAVFNMFAEDGDLSKLM 575 (609)
Q Consensus 510 ~~~~~~~~p~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~ 575 (609)
..+... +-....|.-|...|++- ++..++.++|..-..... .-+...|..++-.|.+.|+++.|.
T Consensus 1305 ~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1305 AALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 988543 23344566666666653 455556665543221100 123567999999999999999998
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.2e-17 Score=161.07 Aligned_cols=265 Identities=9% Similarity=-0.004 Sum_probs=195.2
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCC
Q 037911 125 TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPS 204 (609)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 204 (609)
+...|..++..+.+.|++++|...|+++++. .|.+...+..+.. .|...|++++|+..|+++.+.. +.+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~-------~~~~~g~~~~A~~~~~~al~~~-p~~ 132 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQ---DPGDAEAWQFLGI-------TQAENENEQAAIVALQRCLELQ-PNN 132 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcCCHHHHHHHHH-------HHHHCCCHHHHHHHHHHHHhcC-CCC
Confidence 5566889999999999999999999999976 4567888888888 8999999999999999998865 556
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-----------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-
Q 037911 205 IVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPN-----------THTFNILTHVFCKNGDVDKVNGFLEKIEEEGFD- 272 (609)
Q Consensus 205 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~- 272 (609)
..+|..+..++...|++++|...|+++.+.. |+ ...+..+...+...|++++|...++++.+....
T Consensus 133 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 210 (365)
T 4eqf_A 133 LKALMALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDM 210 (365)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCc
Confidence 8889999999999999999999999987642 32 122334567778888888888888888876422
Q ss_pred CCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037911 273 PDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLI 352 (609)
Q Consensus 273 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 352 (609)
.+..++..+...|...|++++|++.|++..+.... +..+|..+...+...|++++|...|+++.+.. +.+..++..+.
T Consensus 211 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 288 (365)
T 4eqf_A 211 IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLG 288 (365)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHH
Confidence 15777888888888888888888888888776433 56778888888888888888888888887752 23467777888
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCc-----------cCHHHHHHHHHHHHccCCHHHHHHHHH
Q 037911 353 FAYCKEGKMQESKSLLYEMMGNGIY-----------PDTFTCQIIVQGYGKEGRLLSALNLVV 404 (609)
Q Consensus 353 ~~~~~~g~~~~A~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~A~~~~~ 404 (609)
.+|.+.|++++|...|+++.+.... .+...|..+..++...|+.+.+..+..
T Consensus 289 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 289 ISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8888888888888888877653110 024456666666666666666555543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-17 Score=160.29 Aligned_cols=226 Identities=13% Similarity=0.092 Sum_probs=47.9
Q ss_pred HHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhcccc
Q 037911 96 SRVLLRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTED 175 (609)
Q Consensus 96 ~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 175 (609)
+.+|...-++.+.|.+|++.. +.+.+|..++.++.+.|++++|++.|.+. ++...|..++.
T Consensus 9 ~~~ll~~~~~ld~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfika--------~D~~~y~~V~~---- 69 (449)
T 1b89_A 9 VQVLIEHIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--------DDPSSYMEVVQ---- 69 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHccCHHHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHcC--------CCHHHHHHHHH----
Confidence 344444444555555555432 22335555555555555555555554321 12334444444
Q ss_pred chhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 037911 176 CNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGD 255 (609)
Q Consensus 176 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 255 (609)
.+...|++++|+..++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|+
T Consensus 70 ---~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~ 137 (449)
T 1b89_A 70 ---AANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKM 137 (449)
T ss_dssp --------------------------------------------CHHHHTTTTT-------CC----------------C
T ss_pred ---HHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCC
Confidence 444455555555544444432 2333444445555555555555444442 1344444445555555555
Q ss_pred hHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 037911 256 VDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHR 335 (609)
Q Consensus 256 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 335 (609)
+++|...|..+ ..|..++.++.+.|++++|.+.++++ .++.+|..++.+|+..|+++.|......
T Consensus 138 yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~ 202 (449)
T 1b89_A 138 YDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH 202 (449)
T ss_dssp TTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT
T ss_pred HHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH
Confidence 55555555433 23444444455555555554444444 1344444444444444544444332222
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 037911 336 MVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMM 372 (609)
Q Consensus 336 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 372 (609)
+ ...+.....++..|.+.|.+++|..+++..+
T Consensus 203 L-----~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL 234 (449)
T 1b89_A 203 I-----VVHADELEELINYYQDRGYFEELITMLEAAL 234 (449)
T ss_dssp T-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred H-----HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 1 1122222334444444444444444444444
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-17 Score=160.31 Aligned_cols=283 Identities=12% Similarity=0.103 Sum_probs=133.4
Q ss_pred HHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 037911 181 VKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVN 260 (609)
Q Consensus 181 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 260 (609)
-+.|++++|.+.++++. +..+|..|+.++.+.|++++|++.|.+ .+|..+|..++..+...|++++|+
T Consensus 14 ~~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHH
Confidence 37788999999999883 234899999999999999999999965 367779999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037911 261 GFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRG 340 (609)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g 340 (609)
.+++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|++++|..+|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 988877764 4567889999999999999999988874 267789999999999999999999999977
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 037911 341 LSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDY 420 (609)
Q Consensus 341 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 420 (609)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|...... +...+.-...
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~ 212 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEE 212 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHH
Confidence 37899999999999999999999988 2789999999999999999999655443 2345555667
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCC------CHHHHHHHH
Q 037911 421 LIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKC--DSVADALLLKDEMVDRNIKP------SLSTYRALI 492 (609)
Q Consensus 421 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~p------~~~~~~~li 492 (609)
++..|.+.|+++++..+++...... +-....|+.+.-+|++- +++.+.++.|..- .++.| +...|..+.
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e~~ 289 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELV 289 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHH
Confidence 8889999999999999999986555 56778888887777764 3444455444321 12222 345688888
Q ss_pred HHHhcCCCHhHHHHH
Q 037911 493 CCFCGIGRSGEAVSL 507 (609)
Q Consensus 493 ~~~~~~g~~~~A~~~ 507 (609)
..|...++++.|...
T Consensus 290 ~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 290 FLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHTTCHHHHHHH
T ss_pred HHHHhhchHHHHHHH
Confidence 889999999988774
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.8e-17 Score=162.89 Aligned_cols=265 Identities=9% Similarity=-0.071 Sum_probs=168.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHH
Q 037911 312 TYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYG 391 (609)
Q Consensus 312 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 391 (609)
.+..+...+.+.|++++|..+|+++.+.. +.+...+..+..++...|++++|...|+++.+.. +.+..++..+...|.
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYT 144 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34555555555555555555555555432 2244455555555555555555555555555432 123445555555555
Q ss_pred ccCCHHHHHHHHHHHHHCCCC---------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHH
Q 037911 392 KEGRLLSALNLVVELQRFGVS---------ISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYV-PSLEIYNELMESLC 461 (609)
Q Consensus 392 ~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 461 (609)
..|++++|+..++++.+.... .....+..+...+...|++++|...++++...... .+..++..+...+.
T Consensus 145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence 555555555555555443210 01223344566777777777888877777554321 26778888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 037911 462 KCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEA 541 (609)
Q Consensus 462 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 541 (609)
+.|++++|+..|+++.+... .+..+|..+..+|...|++++|+..++++.+.. +.+..++..+..+|.+.|++++|..
T Consensus 225 ~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 302 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVS 302 (365)
T ss_dssp HHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHH
Confidence 88889999888888887542 457788888888888999999999998888753 3457788888899999999999999
Q ss_pred HHHHHHHcCCC-----------CChhcHHHHHHHHHhcCCHHHHHHHHHH
Q 037911 542 LLGFFAKKFQI-----------YDTESYNAVFNMFAEDGDLSKLMELQKR 580 (609)
Q Consensus 542 ~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 580 (609)
.++++.+.... .+...|..+..++...|+.+.+.++.++
T Consensus 303 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 303 NFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99888765211 1256788999999999999888877665
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-16 Score=154.27 Aligned_cols=265 Identities=9% Similarity=-0.047 Sum_probs=169.1
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCC
Q 037911 125 TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPS 204 (609)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 204 (609)
+...+..++..+...|++++|..+++++++. .|.+...+..+.. .+...|++++|+..|+++.+.. +.+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~-------~~~~~~~~~~A~~~~~~a~~~~-~~~ 88 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQA---APEREEAWRSLGL-------TQAENEKDGLAIIALNHARMLD-PKD 88 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCCHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHhcC-cCC
Confidence 3455677777788888888888888888765 3456666666666 7778888888888888887754 456
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH--------------HH-HHHHcCChHHHHHHHHHHHHc
Q 037911 205 IVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNIL--------------TH-VFCKNGDVDKVNGFLEKIEEE 269 (609)
Q Consensus 205 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~a~~~~~~~~~~ 269 (609)
..++..+...+...|++++|.+.++++.+.. +.+...+..+ .. .+...|++++|...++++.+.
T Consensus 89 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 167 (327)
T 3cv0_A 89 IAVHAALAVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM 167 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh
Confidence 7777777778888888888888888777642 1222222222 11 255556677777777776665
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 037911 270 GFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYN 349 (609)
Q Consensus 270 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 349 (609)
. +.+...+..+...+...|++++|++.++++.+.... +..++..+...+...|++++|...++++.+.. +.+...+.
T Consensus 168 ~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 244 (327)
T 3cv0_A 168 N-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMY 244 (327)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHH
Confidence 3 225566666667777777777777777766654332 45566666666667777777777776666542 22455666
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCcc-----------CHHHHHHHHHHHHccCCHHHHHHHHH
Q 037911 350 TLIFAYCKEGKMQESKSLLYEMMGNGIYP-----------DTFTCQIIVQGYGKEGRLLSALNLVV 404 (609)
Q Consensus 350 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~ 404 (609)
.+...+...|++++|...++++.+..... +...+..+...+.+.|++++|..+++
T Consensus 245 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 245 NMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 66666666677777777666665432110 24556666666666666666666554
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-15 Score=155.32 Aligned_cols=374 Identities=11% Similarity=0.015 Sum_probs=220.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC--------CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-----
Q 037911 203 PSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRI--------GICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEE----- 269 (609)
Q Consensus 203 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----- 269 (609)
.....||.|..++...|++++|++.|++..+. ..+....+|+.+..+|...|++++|...+++..+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34556777777777778888887777765431 11223466777777788888888887777766542
Q ss_pred C-CC-CCHHhHHHHHHHHHhc--CCHhHHHHHHHHHhhCCccCCHhhHHHHHHH---HHhcCCHHHHHHHHHHHHHCCCC
Q 037911 270 G-FD-PDLVTYNTLISSYCKK--GRLNDAFYLYRIMYRRNVLPDLVTYTTLMNG---LCKEGKVREAHQLFHRMVHRGLS 342 (609)
Q Consensus 270 ~-~~-~~~~~~~~li~~~~~~--g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~---~~~~~~~~~a~~~~~~m~~~g~~ 342 (609)
+ .. ....++..+..++... +++++|+..|++..+..+. +...+..+..+ +...++.++|++.+++..+.. +
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 0 01 1234555555444443 4577888888877765432 34444444433 334566677777777776642 2
Q ss_pred CCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 037911 343 PDIVSYNTLIFAYCK----EGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIY 418 (609)
Q Consensus 343 p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 418 (609)
.+...+..+...+.. .|++++|..++++..... +.+...+..+...|...|++++|+..+++..+..+ -+..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP-NNAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-ChHHHH
Confidence 234445444444433 356677777777776543 23556677777778888888888888887776642 245555
Q ss_pred HHHHHHHHhc-------------------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037911 419 DYLIVALCQD-------------------NRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDR 479 (609)
Q Consensus 419 ~~ll~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 479 (609)
..+..+|... +..+.|...+++..... +.+...+..+...+...|++++|+..|++..+.
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 5554444321 22456667777765443 345567888899999999999999999999886
Q ss_pred CCCCCHH--HHHHHHH-HHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChh
Q 037911 480 NIKPSLS--TYRALIC-CFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTE 556 (609)
Q Consensus 480 ~~~p~~~--~~~~li~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 556 (609)
...+... .+..+.. .+...|+.++|+..|+++++. .|+...... ....+.++++...+.. +.+..
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l~~~~~~~l~~~-p~~~~ 431 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKLQKIAKMRLSKN-GADSE 431 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHHHHHHHHHHHHC-C-CTT
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHHHHHHHHHHHhC-CCCHH
Confidence 5433221 2222322 345789999999999999864 455433222 2344556666666553 45678
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCChhhH
Q 037911 557 SYNAVFNMFAEDGDLSKLMELQKRFLRLG-FAPNNLTC 593 (609)
Q Consensus 557 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~ 593 (609)
+|..+..+|...|++++|++.|++.++.| ..|+..+|
T Consensus 432 ~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 432 ALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHHHHHHHHHCC----------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 99999999999999999999999999764 34554443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-15 Score=154.45 Aligned_cols=390 Identities=10% Similarity=-0.075 Sum_probs=236.3
Q ss_pred CCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhC------CCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHH
Q 037911 122 IKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVK------DCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRK 195 (609)
Q Consensus 122 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~ 195 (609)
.......|+.++.++...|++++|++.|+++++... ..+....+|..+.. .|...|++++|+..+++
T Consensus 47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~-------~y~~~g~~~~A~~~~~k 119 (472)
T 4g1t_A 47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAW-------VYYHMGRLSDVQIYVDK 119 (472)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHH-------HHHHTTCHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHH-------HHHHcCChHHHHHHHHH
Confidence 344567899999999999999999999999876421 13445566777777 89999999999999998
Q ss_pred HHhC-----C--CCCCHHHHHHHHHHHHhc--CChHHHHHHHHHHhhCCCCCCHHHHHHHHHH---HHHcCChHHHHHHH
Q 037911 196 TLDV-----G--FQPSIVSCNFLLNGLLKL--NCIDQCWQVYEEMGRIGICPNTHTFNILTHV---FCKNGDVDKVNGFL 263 (609)
Q Consensus 196 ~~~~-----~--~~~~~~~~~~ll~~~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~ 263 (609)
+.+. + ......++..+..++... +++++|++.|++..+.. +-+...+..+..+ +...++.++|++.+
T Consensus 120 a~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~ 198 (472)
T 4g1t_A 120 VKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPL 198 (472)
T ss_dssp HHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHH
T ss_pred HHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 8752 1 122356676666666554 56899999999988743 2334555555444 34567888899999
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHHh----cCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037911 264 EKIEEEGFDPDLVTYNTLISSYCK----KGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHR 339 (609)
Q Consensus 264 ~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 339 (609)
++..+.. +.+..++..+...+.. .|++++|.+.+++....... +..++..+...+...|++++|...+++..+.
T Consensus 199 ~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 276 (472)
T 4g1t_A 199 RQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEY 276 (472)
T ss_dssp HHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence 8888764 3355566665555544 46788999999988876543 6778888999999999999999999999876
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 037911 340 GLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYD 419 (609)
Q Consensus 340 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 419 (609)
. +-+..++..+..+|...+....+.. ...........+.++.|+..+++..+.+ +.+...+.
T Consensus 277 ~-p~~~~~~~~lg~~y~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 338 (472)
T 4g1t_A 277 I-PNNAYLHCQIGCCYRAKVFQVMNLR----------------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCS 338 (472)
T ss_dssp S-TTCHHHHHHHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHH
T ss_pred C-CChHHHHHHHHHHHHHHHHHhhhHH----------------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cchhhhhh
Confidence 2 2345666666655543211100000 0000000111123456666666666554 22344566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 037911 420 YLIVALCQDNRPFAATSLLERIGQDGYVPSL--EIYNELME-SLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFC 496 (609)
Q Consensus 420 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 496 (609)
.+...+...|++++|...+++.......+.. ..+..+.. .....|++++|+..|++..+.. |+.......
T Consensus 339 ~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~~~----- 411 (472)
T 4g1t_A 339 ILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREKEKM----- 411 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHHHHH-----
T ss_pred hHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHH-----
Confidence 6667777777777777777776554322221 11222222 2345678888888888877743 443322222
Q ss_pred cCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 037911 497 GIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQ 551 (609)
Q Consensus 497 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 551 (609)
.+.+.++++..++.. +.+..+|..+..+|...|++++|.+.|++..+.+.
T Consensus 412 ----~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 412 ----KDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp ----HHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC--------------
T ss_pred ----HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 233445555555433 44567788888888888888888888888886643
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.1e-18 Score=177.25 Aligned_cols=118 Identities=9% Similarity=0.089 Sum_probs=75.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhh---CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHH
Q 037911 204 SIVSCNFLLNGLLKLNCIDQCWQVYEEMGR---IGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNT 280 (609)
Q Consensus 204 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 280 (609)
-..+||+||++|++.|++++|.++|++|.+ .|+.||..|||+||.+||+.|++++|.++|++|.+.|+.||.+|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 344666666666666666666666665542 35666666666666666666666666666666666666666666666
Q ss_pred HHHHHHhcCC-HhHHHHHHHHHhhCCccCCHhhHHHHHHHHH
Q 037911 281 LISSYCKKGR-LNDAFYLYRIMYRRNVLPDLVTYTTLMNGLC 321 (609)
Q Consensus 281 li~~~~~~g~-~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~ 321 (609)
+|.++++.|+ .++|.++|++|.+.|+.||..+|+.++.+..
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~e 247 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEED 247 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhh
Confidence 6666666665 3556666666666666666666666665433
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.74 E-value=8e-16 Score=148.37 Aligned_cols=151 Identities=9% Similarity=-0.068 Sum_probs=82.1
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHH
Q 037911 428 DNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSL 507 (609)
Q Consensus 428 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 507 (609)
.|++++|...++++.... +.+...+..+...+.+.|++++|...++++.+... .+..++..+...+...|++++|...
T Consensus 151 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~ 228 (327)
T 3cv0_A 151 PNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDA 228 (327)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 334444444444443222 22445555555555555566666665555554321 2345555566666666666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-----------ChhcHHHHHHHHHhcCCHHHHHH
Q 037911 508 MDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIY-----------DTESYNAVFNMFAEDGDLSKLME 576 (609)
Q Consensus 508 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~ 576 (609)
++++.+.. +.+...+..+...+...|++++|.+.++++.+..... +...|..+..++...|++++|.+
T Consensus 229 ~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 307 (327)
T 3cv0_A 229 YNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVEL 307 (327)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHH
Confidence 66655432 2345556666666666666666666666665542110 24556666666666666666666
Q ss_pred HHHHH
Q 037911 577 LQKRF 581 (609)
Q Consensus 577 ~~~~m 581 (609)
++++.
T Consensus 308 ~~~~~ 312 (327)
T 3cv0_A 308 TYAQN 312 (327)
T ss_dssp HTTCC
T ss_pred HHHHH
Confidence 66544
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-15 Score=142.69 Aligned_cols=85 Identities=18% Similarity=0.203 Sum_probs=41.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH-HHH
Q 037911 463 CDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNK-AEA 541 (609)
Q Consensus 463 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~ 541 (609)
.|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...++++++.. +-+..++..++..+...|+.++ +.+
T Consensus 179 ~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~ 256 (291)
T 3mkr_A 179 GEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNR 256 (291)
T ss_dssp TTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred chHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHH
Confidence 355555555555555432 2344455555555555555555555555555432 2244445555555555555443 344
Q ss_pred HHHHHHHc
Q 037911 542 LLGFFAKK 549 (609)
Q Consensus 542 ~~~~~~~~ 549 (609)
+++++.+.
T Consensus 257 ~~~~~~~~ 264 (291)
T 3mkr_A 257 YLSQLKDA 264 (291)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555444
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.2e-18 Score=176.26 Aligned_cols=153 Identities=12% Similarity=0.201 Sum_probs=126.8
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---cCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhH
Q 037911 237 CPNTHTFNILTHVFCKNGDVDKVNGFLEKIEE---EGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTY 313 (609)
Q Consensus 237 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 313 (609)
..-..||++||++||+.|++++|.++|++|.+ .|+.||+.+||+||.+||+.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 34467999999999999999999999988764 588999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccC------HHHHHHH
Q 037911 314 TTLMNGLCKEGK-VREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPD------TFTCQII 386 (609)
Q Consensus 314 ~~ll~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~l 386 (609)
+++|.++|+.|+ .++|.++|++|.+.|+.||..+|+.++.+..+. .+++..+++ ..+..|+ ..+...|
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL 278 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLL 278 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHH
Confidence 999999999998 478999999999999999999999998766544 344444444 2244443 4455666
Q ss_pred HHHHHccC
Q 037911 387 VQGYGKEG 394 (609)
Q Consensus 387 ~~~~~~~~ 394 (609)
.+.|.+.+
T Consensus 279 ~dl~s~d~ 286 (1134)
T 3spa_A 279 RDVYAKDG 286 (1134)
T ss_dssp HHHHCCCS
T ss_pred HHHHccCC
Confidence 66666655
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.8e-15 Score=141.12 Aligned_cols=258 Identities=15% Similarity=0.046 Sum_probs=187.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCH
Q 037911 319 GLCKEGKVREAHQLFHRMVHRGLSPDI--VSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRL 396 (609)
Q Consensus 319 ~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 396 (609)
-....|++..|+..++..... .|+. .....+..+|...|+++.|...++. .-.|+..++..+...+...++.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcH
Confidence 344566777777666654432 3332 2334456677777777777765543 1244566677777777777777
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037911 397 LSALNLVVELQRFGVSI-SRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDE 475 (609)
Q Consensus 397 ~~A~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 475 (609)
++|++.++++...+..| +...+..+..++...|++++|...+++ +.+...+..++..+.+.|++++|.+.|++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777777776655333 455556666777788888888877776 45778888889999999999999999999
Q ss_pred HHHCCCCCCHHHH---HHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 037911 476 MVDRNIKPSLSTY---RALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQI 552 (609)
Q Consensus 476 ~~~~~~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 552 (609)
+.+.. |+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...++++.+.. +
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p 231 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-S 231 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 98764 553321 22334455679999999999999986 46688899999999999999999999999999873 3
Q ss_pred CChhcHHHHHHHHHhcCCHHH-HHHHHHHHHHcCCCCChhhHH
Q 037911 553 YDTESYNAVFNMFAEDGDLSK-LMELQKRFLRLGFAPNNLTCK 594 (609)
Q Consensus 553 ~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~g~~p~~~~~~ 594 (609)
-++.++..++..+...|+.++ +.++++++++. .|+.....
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~~~~ 272 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHPFIK 272 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCChHHH
Confidence 466789999999999999976 57899999865 66665443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-14 Score=145.51 Aligned_cols=347 Identities=12% Similarity=-0.014 Sum_probs=189.7
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCH---HHHHHHHHHHHhCCCCCCHHH
Q 037911 131 LIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLI---RESFKTFRKTLDVGFQPSIVS 207 (609)
Q Consensus 131 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~ 207 (609)
.+...+.+.|++++|.+.|+++.+. + +...+..+.. .|...|+. ++|+..|++..+. +...
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~--g---~~~A~~~Lg~-------~y~~~g~~~d~~~A~~~~~~A~~~----~~~A 71 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAEL--G---YSEAQVGLAD-------IQVGTRDPAQIKQAEATYRAAADT----SPRA 71 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--T---CCTGGGTCC---------------------------------------C
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHC--C---CHHHHHHHHH-------HHHccCCCCCHHHHHHHHHHHHhC----CHHH
Confidence 3566667778888888888887765 2 2233333444 55666777 7888888877753 5556
Q ss_pred HHHHHHHHHhcC-----ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChH---HHHHHHHHHHHcCCCCCHHhHH
Q 037911 208 CNFLLNGLLKLN-----CIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVD---KVNGFLEKIEEEGFDPDLVTYN 279 (609)
Q Consensus 208 ~~~ll~~~~~~~-----~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~ 279 (609)
+..|...+...+ +.++|...|++..+.|. ...+..|...|...+..+ ++.+.+......| +.....
T Consensus 72 ~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~ 145 (452)
T 3e4b_A 72 QARLGRLLAAKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGL 145 (452)
T ss_dssp HHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHH
T ss_pred HHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHH
Confidence 666666454444 66778888888777552 225555666666554433 3444444444443 345566
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 037911 280 TLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEG---KVREAHQLFHRMVHRGLSPDIVSYNTLIFAYC 356 (609)
Q Consensus 280 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 356 (609)
.+...|...+.++++.+....+.+.-...+...+..|...|...| +.++|.+.|++..+.| .++...+..|...|.
T Consensus 146 ~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~ 224 (452)
T 3e4b_A 146 AQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLG 224 (452)
T ss_dssp HHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHh
Confidence 666677776654444433222222111113336677777777777 7778888888877775 334444455666664
Q ss_pred Hc----CChHHHHHHHHHHHHCCCccCHHHHHHHHHH-H--HccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 037911 357 KE----GKMQESKSLLYEMMGNGIYPDTFTCQIIVQG-Y--GKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDN 429 (609)
Q Consensus 357 ~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 429 (609)
.. +++++|..+|++.. . -+...+..+... + ...+++++|+..|++..+.| +...+..+...|. .|
T Consensus 225 ~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G 296 (452)
T 3e4b_A 225 DATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EG 296 (452)
T ss_dssp CGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HC
T ss_pred CCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cC
Confidence 43 57778888887776 2 244555555555 3 45677777877777777665 4555666666655 33
Q ss_pred -----ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc---
Q 037911 430 -----RPFAATSLLERIGQDGYVPSLEIYNELMESLCK----CDSVADALLLKDEMVDRNIKPSLSTYRALICCFCG--- 497 (609)
Q Consensus 430 -----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~--- 497 (609)
++.+|...+++.. . .+...+..|...|.. ..++++|..+|++..+.|. ......|...|..
T Consensus 297 ~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g 369 (452)
T 3e4b_A 297 KWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKG 369 (452)
T ss_dssp SSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTT
T ss_pred CCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCC
Confidence 6666776666655 2 345555566655555 2367777777777666553 2333444444432
Q ss_pred -CCCHhHHHHHHHHHHHCC
Q 037911 498 -IGRSGEAVSLMDEMLESG 515 (609)
Q Consensus 498 -~g~~~~A~~~~~~~~~~~ 515 (609)
..+.++|...|+...+.|
T Consensus 370 ~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 370 TKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp BCCCHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHCC
Confidence 346667777777766655
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.67 E-value=8e-15 Score=131.79 Aligned_cols=199 Identities=16% Similarity=0.153 Sum_probs=112.1
Q ss_pred CCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCC
Q 037911 123 KPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQ 202 (609)
Q Consensus 123 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 202 (609)
++++..+..+...+.+.|++++|...|+++++. .|.+...+..+.. .+.+.|++++|+..|+++++.. +
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~-------~~~~~g~~~~A~~~~~~al~~~-P 70 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKE---NPQDPEALYWLAR-------TQLKLGLVNPALENGKTLVART-P 70 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---SSSCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHHhC-C
Confidence 345666777777777777777777777777754 4556666666666 6777777777777777777654 4
Q ss_pred CCHHHHHHHHHHHHhc-----------CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 037911 203 PSIVSCNFLLNGLLKL-----------NCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGF 271 (609)
Q Consensus 203 ~~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 271 (609)
.+...+..+..++... |++++|...|++..+.. +-+...+..+..++...|++++|+..|++..+..
T Consensus 71 ~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~- 148 (217)
T 2pl2_A 71 RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE- 148 (217)
T ss_dssp TCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred CcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-
Confidence 4566666677666666 66666666666555432 2234455555555555566666666665555554
Q ss_pred CCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037911 272 DPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRM 336 (609)
Q Consensus 272 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 336 (609)
.+...+..+..++...|++++|+..|++..+..+. +...+..+...+...|++++|...|++.
T Consensus 149 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 149 -DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp -CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred -cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 34555555555555555555555555555554322 3445555555555555555555555543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-14 Score=145.45 Aligned_cols=371 Identities=10% Similarity=-0.018 Sum_probs=248.2
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh---HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC-
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCI---DQCWQVYEEMGRIGICPNTHTFNILTHVFCKNG- 254 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g- 254 (609)
.+.+.|++++|++.|+++.+.| +..++..|...|...|+. ++|.+.|++..+. +...+..|...+...|
T Consensus 12 ~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 12 EALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHTC--
T ss_pred HHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCC
Confidence 6788999999999999998866 344556667777777888 8999999998753 5556666766555555
Q ss_pred ----ChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHh---HHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHH
Q 037911 255 ----DVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLN---DAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVR 327 (609)
Q Consensus 255 ----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~---~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 327 (609)
+.++|...|++..+.|. ...+..|...|...+..+ ++.+.+......| +...+..+...|...+.++
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGG
T ss_pred CCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcc
Confidence 78899999999998763 337777888887766543 3455555554444 4566777788888877554
Q ss_pred H----HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHcc----CCH
Q 037911 328 E----AHQLFHRMVHRGLSPDIVSYNTLIFAYCKEG---KMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKE----GRL 396 (609)
Q Consensus 328 ~----a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~ 396 (609)
+ +..+++..... +...+..|...|...| +.++|+..|++..+.|. ++...+..+...|... +++
T Consensus 159 ~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 159 QHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDE 233 (452)
T ss_dssp GGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCH
T ss_pred cCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCH
Confidence 4 44444444332 3337888888999999 99999999999998863 4566556777777655 799
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----CHHH
Q 037911 397 LSALNLVVELQRFGVSISRDIYDYLIVA-L--CQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCD-----SVAD 468 (609)
Q Consensus 397 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~ 468 (609)
++|+..|++.. .| +...+..+... + ...+++++|...+++..+.| +...+..+...|. .| ++++
T Consensus 234 ~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~ 305 (452)
T 3e4b_A 234 KTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKA 305 (452)
T ss_dssp HHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHH
T ss_pred HHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHH
Confidence 99999999988 33 45566666666 4 46889999999999998776 6777888888887 45 9999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhc----CCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHH
Q 037911 469 ALLLKDEMVDRNIKPSLSTYRALICCFCG----IGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCM----EKDVNKAE 540 (609)
Q Consensus 469 A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~ 540 (609)
|.++|++.. . -+...+..|...|.. ..+.++|...|++..+.|. ......|...|.. ..+.++|.
T Consensus 306 A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~ 378 (452)
T 3e4b_A 306 AEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAY 378 (452)
T ss_dssp HHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHH
T ss_pred HHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHH
Confidence 999999887 3 467777788777765 4599999999999998763 3345566666664 46899999
Q ss_pred HHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037911 541 ALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLR 583 (609)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 583 (609)
..++...+.|. ++.......+......++..+|.++.++.++
T Consensus 379 ~~~~~A~~~g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 379 VFSQLAKAQDT-PEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHTTCC-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 99999997763 2222222222222334466677777776554
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=4e-14 Score=131.17 Aligned_cols=225 Identities=15% Similarity=0.014 Sum_probs=138.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCc--cC----HHHHH
Q 037911 311 VTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIY--PD----TFTCQ 384 (609)
Q Consensus 311 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~----~~~~~ 384 (609)
..|..+...+...|++++|..+|+++.+.. .+...+..+..++...|++++|...++++.+.... ++ ...+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345555566666666666666666665554 45555666666666666666666666655543110 01 24444
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 037911 385 IIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCD 464 (609)
Q Consensus 385 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 464 (609)
.+...+...|++++|+..++++.+.. |+. ..+.+.|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~-------------------------------------~~~-------~~~~~~~ 119 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH-------------------------------------RTA-------DILTKLR 119 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-------------------------------------CCH-------HHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC-------------------------------------chh-------HHHHHHh
Confidence 45555555555555555555444431 221 2344456
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 037911 465 SVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLG 544 (609)
Q Consensus 465 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 544 (609)
++++|...++++..... .+...+..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...++
T Consensus 120 ~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 197 (258)
T 3uq3_A 120 NAEKELKKAEAEAYVNP-EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCN 197 (258)
T ss_dssp HHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 67777777777666431 234456666677777777777777777777643 3456677777777888888888888887
Q ss_pred HHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037911 545 FFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRL 584 (609)
Q Consensus 545 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 584 (609)
.+.+.. +.+...|..+..++...|++++|.+.++++++.
T Consensus 198 ~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 198 KAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 777653 334567777778888888888888888877754
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-14 Score=135.61 Aligned_cols=248 Identities=11% Similarity=-0.007 Sum_probs=161.1
Q ss_pred cCCChhHHHHHHHHhhhcCCCC--CCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhH
Q 037911 102 CQSDSVSALTFFNWVKNDLEIK--PTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWA 179 (609)
Q Consensus 102 ~~~~~~~A~~~f~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 179 (609)
..++++.|+..|+.+....... .++..|..++.++...|++++|...++++++. .|.....+..+.. .
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~la~-------~ 86 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI---RPDMPEVFNYLGI-------Y 86 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHHHHHH-------H
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc---CCCcHHHHHHHHH-------H
Confidence 3467888888888888642211 25677888888888888888888888888876 3456677777777 7
Q ss_pred HHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHH
Q 037911 180 YVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKV 259 (609)
Q Consensus 180 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a 259 (609)
|...|++++|++.|+++++.. +.+..++..+..++...|++++|...|+++.+. .|+.......+..+...|++++|
T Consensus 87 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A 163 (275)
T 1xnf_A 87 LTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQA 163 (275)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHH
T ss_pred HHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHH
Confidence 888888888888888888754 445677777888888888888888888887763 35544444455555666778888
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccC---CHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037911 260 NGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLP---DLVTYTTLMNGLCKEGKVREAHQLFHRM 336 (609)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~m 336 (609)
...+++..... +++...+ .++..+...++.++|++.+++..+..... +...+..+...+.+.|++++|...|+++
T Consensus 164 ~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 241 (275)
T 1xnf_A 164 KEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA 241 (275)
T ss_dssp HHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88777666552 2233333 35566666777777777777766543211 1355666666666777777777777766
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 037911 337 VHRGLSPDIVSYNTLIFAYCKEGKMQESKSLL 368 (609)
Q Consensus 337 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 368 (609)
.+. .|+. +.....++...|++++|.+.+
T Consensus 242 l~~--~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 242 VAN--NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HTT--CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred HhC--Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 654 2321 122233445556666655544
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.64 E-value=1e-13 Score=128.49 Aligned_cols=225 Identities=12% Similarity=0.055 Sum_probs=150.4
Q ss_pred HHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HHHH
Q 037911 275 LVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGL--SPD----IVSY 348 (609)
Q Consensus 275 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~--~p~----~~~~ 348 (609)
...+..+...+...|++++|+..|++..+.. .+..+|..+...+...|++++|...+++..+... .++ ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 5678889999999999999999999999887 6889999999999999999999999999987521 112 5788
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 037911 349 NTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQD 428 (609)
Q Consensus 349 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 428 (609)
..+...+...|++++|...++++.+. .|+. ..+.+.|++++|+..++++.... +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 89999999999999999999999875 4553 34555667777777777776643 11233444444444444
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHH
Q 037911 429 NRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLM 508 (609)
Q Consensus 429 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 508 (609)
|++++|...++++.+... .+..++..+..++...|++++|+..+
T Consensus 153 -----------------------------------~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~ 196 (258)
T 3uq3_A 153 -----------------------------------SDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADC 196 (258)
T ss_dssp -----------------------------------TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -----------------------------------cCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 444455444444444321 23444444555555555555555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 037911 509 DEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAK 548 (609)
Q Consensus 509 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 548 (609)
+++.+.. +.+...+..+...+.+.|++++|.+.++++.+
T Consensus 197 ~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 197 NKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5554432 22344455555555555555555555555443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.62 E-value=2.4e-13 Score=132.26 Aligned_cols=234 Identities=11% Similarity=0.020 Sum_probs=182.3
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCC-HHHHHHHHHHHHhCCCCC
Q 037911 125 TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGL-IRESFKTFRKTLDVGFQP 203 (609)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~-~~~A~~~~~~~~~~~~~~ 203 (609)
+...|..+..++...|++++|+..++++++. .|.+..++..+.. .+...|+ +++|+..|+++++.. +.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l---~P~~~~a~~~~g~-------~l~~~g~d~~eAl~~~~~al~l~-P~ 164 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIEL---NAANYTVWHFRRV-------LLKSLQKDLHEEMNYITAIIEEQ-PK 164 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH---CTTCHHHHHHHHH-------HHHHTTCCHHHHHHHHHHHHHHC-TT
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHh---CccCHHHHHHHHH-------HHHHcccCHHHHHHHHHHHHHHC-CC
Confidence 4567778888888889999999999999876 5667778887777 7888896 999999999998865 56
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 037911 204 SIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLIS 283 (609)
Q Consensus 204 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 283 (609)
+..+|+.+..++...|++++|+..|+++.+.. +-+...|..+..++.+.|++++|+..++++++.. +-+...|+.+..
T Consensus 165 ~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~ 242 (382)
T 2h6f_A 165 NYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYF 242 (382)
T ss_dssp CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 78888888888888999999999999888753 4467888888888888899999999999888875 336778888888
Q ss_pred HHHh-cCCHhHH-----HHHHHHHhhCCccCCHhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037911 284 SYCK-KGRLNDA-----FYLYRIMYRRNVLPDLVTYTTLMNGLCKEG--KVREAHQLFHRMVHRGLSPDIVSYNTLIFAY 355 (609)
Q Consensus 284 ~~~~-~g~~~~a-----~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 355 (609)
++.. .|..++| +..|++....... +...|..+...+...| ++++|.+.+.++ +. .+.+...+..+..+|
T Consensus 243 ~l~~l~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~ 319 (382)
T 2h6f_A 243 VISNTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIY 319 (382)
T ss_dssp HHHHTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHH
T ss_pred HHHHhcCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHH
Confidence 8888 5665777 4778887776544 5677888887787777 578888888777 32 234566777777787
Q ss_pred HHcC---------ChHHHHHHHHHH-HHC
Q 037911 356 CKEG---------KMQESKSLLYEM-MGN 374 (609)
Q Consensus 356 ~~~g---------~~~~A~~~~~~~-~~~ 374 (609)
.+.| ..++|..+++++ .+.
T Consensus 320 ~~~~~~~~~~~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 320 EDMLENQCDNKEDILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHHh
Confidence 7763 247888888887 544
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.4e-12 Score=121.93 Aligned_cols=223 Identities=13% Similarity=0.049 Sum_probs=140.7
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHH----hCCHHHHHHHHHHHHhCC
Q 037911 125 TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVK----VGLIRESFKTFRKTLDVG 200 (609)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~g~~~~A~~~~~~~~~~~ 200 (609)
++.++..+...+...|++++|...|+++.+. .+...+..+.. .|.. .|++++|+..|++..+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~-------~~~~g~~~~~~~~~A~~~~~~a~~~~ 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL-----KENSGCFNLGV-------LYYQGQGVEKNLKKAASFYAKACDLN 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----TCHHHHHHHHH-------HHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-----CCHHHHHHHHH-------HHHcCCCcCCCHHHHHHHHHHHHHCC
Confidence 5566677777777777777777777777652 23445555555 5666 777777777777777654
Q ss_pred CCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCC
Q 037911 201 FQPSIVSCNFLLNGLLK----LNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCK----NGDVDKVNGFLEKIEEEGFD 272 (609)
Q Consensus 201 ~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~ 272 (609)
+..++..+...+.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|...+++..+.+
T Consensus 73 ---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-- 144 (273)
T 1ouv_A 73 ---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN-- 144 (273)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--
T ss_pred ---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--
Confidence 56666666666766 677777777777766643 55666666666666 667777777776666654
Q ss_pred CCHHhHHHHHHHHHh----cCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCC
Q 037911 273 PDLVTYNTLISSYCK----KGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCK----EGKVREAHQLFHRMVHRGLSPD 344 (609)
Q Consensus 273 ~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~p~ 344 (609)
+...+..+...|.. .+++++|+..|++..+.+ +...+..+...+.. .+++++|...|++..+.+ +
T Consensus 145 -~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~ 217 (273)
T 1ouv_A 145 -DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---N 217 (273)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---C
T ss_pred -cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---C
Confidence 44555556666665 666666666666666543 34455555666666 666666666666666543 2
Q ss_pred HHHHHHHHHHHHH----cCChHHHHHHHHHHHHC
Q 037911 345 IVSYNTLIFAYCK----EGKMQESKSLLYEMMGN 374 (609)
Q Consensus 345 ~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~ 374 (609)
...+..+...|.. .+++++|...|++..+.
T Consensus 218 ~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 218 GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 4445555555555 56666666666665554
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.62 E-value=7.5e-14 Score=125.42 Aligned_cols=200 Identities=14% Similarity=0.005 Sum_probs=135.9
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHH
Q 037911 202 QPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTL 281 (609)
Q Consensus 202 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 281 (609)
+++...+..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|+..+++..+.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 4566677777778888888888888888877653 4456777778888888888888888888877764 3356677777
Q ss_pred HHHHHhc-----------CCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 037911 282 ISSYCKK-----------GRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNT 350 (609)
Q Consensus 282 i~~~~~~-----------g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 350 (609)
..++... |++++|+..|++..+..+. +...+..+...+...|++++|...|++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 7777777 8888888888877776443 56677777777888888888888888877765 56777777
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 037911 351 LIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQ 407 (609)
Q Consensus 351 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 407 (609)
+..++...|++++|...|++.++.. +.+...+..+...+.+.|++++|+..+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 7777888888888888888777652 2255667777777777788887777776543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.62 E-value=4.1e-13 Score=123.95 Aligned_cols=201 Identities=12% Similarity=0.015 Sum_probs=131.5
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCH
Q 037911 126 SSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSI 205 (609)
Q Consensus 126 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 205 (609)
+..|..++..+...|++++|...++++++. .|.....+..+.. .|...|++++|++.|+++.+.. +.+.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~la~-------~~~~~~~~~~A~~~~~~a~~~~-~~~~ 105 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI---DPSSADAHAALAV-------VFQTEMEPKLADEEYRKALASD-SRNA 105 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH---CTTCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCChHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHHHC-cCcH
Confidence 445666677777777777777777777765 3445566666666 6777777777777777777654 3456
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 037911 206 VSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICP-NTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISS 284 (609)
Q Consensus 206 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 284 (609)
..+..+...+...|++++|.+.++++.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 106 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 184 (252)
T 2ho1_A 106 RVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADL 184 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHH
Confidence 667777777777777777777777776522223 34556666666777777777777777766653 2245566666666
Q ss_pred HHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037911 285 YCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHR 339 (609)
Q Consensus 285 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 339 (609)
+...|++++|...++++.+... .+...+..+...+...|+.++|.++++++.+.
T Consensus 185 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 185 LYKEREYVPARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6777777777777766665433 24555666666666666666666666666654
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.7e-12 Score=121.47 Aligned_cols=225 Identities=12% Similarity=0.032 Sum_probs=176.6
Q ss_pred CcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHhhCCC
Q 037911 161 HSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLK----LNCIDQCWQVYEEMGRIGI 236 (609)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~ 236 (609)
.+...+..+.. .|...|++++|+..|++..+ +.+..++..+...+.. .+++++|...|++..+.+
T Consensus 4 ~~~~a~~~lg~-------~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~- 72 (273)
T 1ouv_A 4 QDPKELVGLGA-------KSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN- 72 (273)
T ss_dssp -CHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred CChHHHHHHHH-------HHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-
Confidence 34555566666 78888899999999998888 3456778888888888 888999999988888764
Q ss_pred CCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh----cCCHhHHHHHHHHHhhCCccC
Q 037911 237 CPNTHTFNILTHVFCK----NGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCK----KGRLNDAFYLYRIMYRRNVLP 308 (609)
Q Consensus 237 ~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p 308 (609)
+...+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+
T Consensus 73 --~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--- 144 (273)
T 1ouv_A 73 --YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--- 144 (273)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---
T ss_pred --CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---
Confidence 67788888888888 888888888888888764 67778888888888 888888888888888765
Q ss_pred CHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCccCH
Q 037911 309 DLVTYTTLMNGLCK----EGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCK----EGKMQESKSLLYEMMGNGIYPDT 380 (609)
Q Consensus 309 ~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~ 380 (609)
+...+..+...+.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +.
T Consensus 145 ~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~ 218 (273)
T 1ouv_A 145 DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NG 218 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CH
Confidence 45667777777777 788888888888888764 45667777778888 888888888888887764 25
Q ss_pred HHHHHHHHHHHc----cCCHHHHHHHHHHHHHCC
Q 037911 381 FTCQIIVQGYGK----EGRLLSALNLVVELQRFG 410 (609)
Q Consensus 381 ~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~ 410 (609)
..+..+...|.+ .+++++|+..+++..+.+
T Consensus 219 ~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 219 GGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 667777777777 788888888888877765
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.5e-13 Score=127.03 Aligned_cols=234 Identities=10% Similarity=0.069 Sum_probs=107.5
Q ss_pred HhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCC--C
Q 037911 127 SNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQP--S 204 (609)
Q Consensus 127 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~ 204 (609)
..+...+..+...|++++|+..++++++. .|.+...+..+.. .|...|++++|++.++++.+.+..+ .
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~~l~~-------~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 73 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAK---KYNSPYIYNRRAV-------CYYELAKYDLAQKDIETYFSKVNATKAK 73 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHT---TCCCSTTHHHHHH-------HHHHTTCHHHHHHHHHHHHTTSCTTTCC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCcHHHHHHHHH-------HHHHHhhHHHHHHHHHHHHhccCchhHH
Confidence 34445555556666666666666666544 2233344444444 5556666666666666655522111 1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 037911 205 IVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISS 284 (609)
Q Consensus 205 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 284 (609)
..+|..+...+...|++++|.+.|++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~ 151 (272)
T 3u4t_A 74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQA 151 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHH
Confidence 2234555555555555555555555554431 2233445555555555555555555555554431 2233344444412
Q ss_pred HHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHH
Q 037911 285 YCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGK---VREAHQLFHRMVHRG-LSPD------IVSYNTLIFA 354 (609)
Q Consensus 285 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~m~~~g-~~p~------~~~~~~li~~ 354 (609)
+...+++++|++.|++..+.... +...+..+...+...|+ +++|...+++..+.. -.|+ ...|..+...
T Consensus 152 ~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 230 (272)
T 3u4t_A 152 YYYNKEYVKADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYY 230 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 22233555555555555443221 23344444444444444 444444444443320 0111 1233444444
Q ss_pred HHHcCChHHHHHHHHHHHH
Q 037911 355 YCKEGKMQESKSLLYEMMG 373 (609)
Q Consensus 355 ~~~~g~~~~A~~~~~~~~~ 373 (609)
|...|++++|...++++.+
T Consensus 231 ~~~~~~~~~A~~~~~~al~ 249 (272)
T 3u4t_A 231 YTINRDKVKADAAWKNILA 249 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHh
Confidence 4444445555444444443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.60 E-value=7.7e-13 Score=119.60 Aligned_cols=202 Identities=12% Similarity=0.023 Sum_probs=131.2
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCC
Q 037911 125 TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPS 204 (609)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 204 (609)
++..|..++..+...|++++|.+.++++++. .|.+...+..+.. .|...|++++|++.++++.+.. +.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~-------~~~~~~~~~~A~~~~~~a~~~~-~~~ 75 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKS---DPKNELAWLVRAE-------IYQYLKVNDKAQESFRQALSIK-PDS 75 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh---CccchHHHHHHHH-------HHHHcCChHHHHHHHHHHHHhC-CCC
Confidence 4566777777777778888888877777765 3445666666666 6777777777777777777654 445
Q ss_pred HHHHHHHHHHHHhc-CChHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 037911 205 IVSCNFLLNGLLKL-NCIDQCWQVYEEMGRIGICPN-THTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLI 282 (609)
Q Consensus 205 ~~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 282 (609)
..++..+...+... |++++|...++++.+.+..|+ ...+..+...+...|++++|...++++.+.. +.+...+..+.
T Consensus 76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 154 (225)
T 2vq2_A 76 AEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELA 154 (225)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHH
Confidence 66677777777777 777777777777766222222 4556666666777777777777777666553 22455666666
Q ss_pred HHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037911 283 SSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVH 338 (609)
Q Consensus 283 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 338 (609)
..+...|++++|...++++.+.....+...+..+...+...|+.+.|..+++.+.+
T Consensus 155 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 155 RTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 66666666666666666666543312445555555556666666666666666654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.59 E-value=6.2e-13 Score=124.31 Aligned_cols=228 Identities=13% Similarity=0.016 Sum_probs=182.8
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHHcCCh
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPN--THTFNILTHVFCKNGDV 256 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~g~~ 256 (609)
.+...|++++|+..|+++.+.. +.+...+..+...+...|++++|.+.+++..+.+..++ ...|..+...+...|++
T Consensus 12 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~ 90 (272)
T 3u4t_A 12 FLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQD 90 (272)
T ss_dssp HHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccH
Confidence 7889999999999999999865 44566888899999999999999999999987432222 34588899999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037911 257 DKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRM 336 (609)
Q Consensus 257 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 336 (609)
++|.+.+++..+.. +.+..++..+...|...|++++|+..|++..+.... +...|..+...+...+++++|.+.|+++
T Consensus 91 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a 168 (272)
T 3u4t_A 91 SLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYVKADSSFVKV 168 (272)
T ss_dssp HHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998874 335678999999999999999999999999877433 5677777773444556999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHCC-CccC------HHHHHHHHHHHHccCCHHHHHHHHHHH
Q 037911 337 VHRGLSPDIVSYNTLIFAYCKEGK---MQESKSLLYEMMGNG-IYPD------TFTCQIIVQGYGKEGRLLSALNLVVEL 406 (609)
Q Consensus 337 ~~~g~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~ 406 (609)
.+.. +.+...+..+..++...|+ +++|...++++.+.. ..|+ ...|..+...|...|++++|...++++
T Consensus 169 ~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 247 (272)
T 3u4t_A 169 LELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNI 247 (272)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8863 2346777778888888888 888999988877541 1133 256777888889999999999999998
Q ss_pred HHCC
Q 037911 407 QRFG 410 (609)
Q Consensus 407 ~~~~ 410 (609)
.+..
T Consensus 248 l~~~ 251 (272)
T 3u4t_A 248 LALD 251 (272)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 8875
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=4.7e-14 Score=132.21 Aligned_cols=250 Identities=9% Similarity=-0.021 Sum_probs=158.2
Q ss_pred HhCCChhHHHHHHHHHHHhhCCC-CCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 037911 137 AWNNKFSFAMKMLCELVELVKDC-PHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGL 215 (609)
Q Consensus 137 ~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 215 (609)
...|++++|+..++++++..+.. |.....+..+.. .|...|++++|+..|+++.+.. +.+..+|..+...+
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~ 87 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGV-------LYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYL 87 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHH-------HHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHH
Confidence 34567888888888887642111 234556666666 7788888888888888887754 45677778888888
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHH
Q 037911 216 LKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAF 295 (609)
Q Consensus 216 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 295 (609)
...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++++.+. .|+.......+..+...|++++|.
T Consensus 88 ~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~ 164 (275)
T 1xnf_A 88 TQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAK 164 (275)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHH
T ss_pred HHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHH
Confidence 88888888888888877642 335677777777788888888888888887765 344444444444556667777887
Q ss_pred HHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 037911 296 YLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLS---PDIVSYNTLIFAYCKEGKMQESKSLLYEMM 372 (609)
Q Consensus 296 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 372 (609)
..+++...... ++...+ .++..+...++.++|...+.+..+.... .+...+..+...|.+.|++++|...|+++.
T Consensus 165 ~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 242 (275)
T 1xnf_A 165 EVLKQHFEKSD-KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 242 (275)
T ss_dssp HHHHHHHHHSC-CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC-cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77776665432 233333 3555666667777777777776554211 013556666777777777777777777776
Q ss_pred HCCCccCHHHHHHHHHHHHccCCHHHHHHHH
Q 037911 373 GNGIYPDTFTCQIIVQGYGKEGRLLSALNLV 403 (609)
Q Consensus 373 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 403 (609)
+. .|+. +.....++...|++++|++.+
T Consensus 243 ~~--~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 243 AN--NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TT--CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred hC--Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 54 2321 222234455556666665544
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.59 E-value=7.3e-11 Score=122.59 Aligned_cols=438 Identities=11% Similarity=0.066 Sum_probs=275.1
Q ss_pred HHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---hH
Q 037911 146 MKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNC---ID 222 (609)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---~~ 222 (609)
+..|++.+.. .|.+...+..++. ...+.+.++.+..+|+++... ++.+...|...+..-.+.+. ++
T Consensus 52 i~~lE~~l~~---np~d~~~W~~yi~-------~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~ 120 (679)
T 4e6h_A 52 IGKLNDMIEE---QPTDIFLYVKLLK-------HHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAA 120 (679)
T ss_dssp HHHHHHHHHH---CTTCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHH
T ss_pred HHHHHHHHHH---CcCCHHHHHHHHH-------HHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHH
Confidence 3444555543 4566777777776 556667777777777777764 35566667777776666666 77
Q ss_pred HHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCCh--------HHHHHHHHHHHHc-CC-CCC-HHhHHHHHHHHH----
Q 037911 223 QCWQVYEEMGRIG-ICPNTHTFNILTHVFCKNGDV--------DKVNGFLEKIEEE-GF-DPD-LVTYNTLISSYC---- 286 (609)
Q Consensus 223 ~a~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~g~~--------~~a~~~~~~~~~~-~~-~~~-~~~~~~li~~~~---- 286 (609)
.+..+|++..... .+|+...|..-+....+.++. +.+.++|+..... |. .++ ...|...+....
T Consensus 121 ~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~ 200 (679)
T 4e6h_A 121 VIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKP 200 (679)
T ss_dssp HHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccc
Confidence 7777777776642 126666666655544444432 2334556554432 44 333 455666655432
Q ss_pred -----hcCCHhHHHHHHHHHhhCCccCCHhhHH---HHHHHH----------HhcCCHHHHHHHHHHHHHC--CCC----
Q 037911 287 -----KKGRLNDAFYLYRIMYRRNVLPDLVTYT---TLMNGL----------CKEGKVREAHQLFHRMVHR--GLS---- 342 (609)
Q Consensus 287 -----~~g~~~~a~~~~~~~~~~~~~p~~~~~~---~ll~~~----------~~~~~~~~a~~~~~~m~~~--g~~---- 342 (609)
..++++.+..+|++.+......-..+|. .+.... -...+++.|...+.++... ++.
T Consensus 201 ~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p 280 (679)
T 4e6h_A 201 VNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLP 280 (679)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCC
T ss_pred cCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccc
Confidence 2334566777777776532211112221 111110 0011234445555443321 111
Q ss_pred -----------C-----C---HHHHHHHHHHHHHcC-------ChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCH
Q 037911 343 -----------P-----D---IVSYNTLIFAYCKEG-------KMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRL 396 (609)
Q Consensus 343 -----------p-----~---~~~~~~li~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 396 (609)
| + ...|...+.---..+ ..+.+..+|++.+.. ++-+...|...+..+...|+.
T Consensus 281 ~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~ 359 (679)
T 4e6h_A 281 ITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTD 359 (679)
T ss_dssp SSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCC
T ss_pred cccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcH
Confidence 1 1 133444443322222 123455678887765 344677888888888888998
Q ss_pred HHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC---------CCC------------CHHHHH
Q 037911 397 LSAL-NLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDG---------YVP------------SLEIYN 454 (609)
Q Consensus 397 ~~A~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---------~~~------------~~~~~~ 454 (609)
++|. .+|++..... +.+...+...+......|+++.|..+++++.... ..| ...+|.
T Consensus 360 ~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi 438 (679)
T 4e6h_A 360 STVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYC 438 (679)
T ss_dssp TTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHH
Confidence 8997 9999988753 4566677778888889999999999998885421 013 234688
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhcC-CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 037911 455 ELMESLCKCDSVADALLLKDEMVDR-NIKPSLSTYRALICCFCGI-GRSGEAVSLMDEMLESGMLPDSQICRVLINGYCM 532 (609)
Q Consensus 455 ~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 532 (609)
..+....+.|..+.|..+|.+..+. +. .....|...+..-.+. ++.+.|.++|+..++. .+-+...+...+.....
T Consensus 439 ~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~ 516 (679)
T 4e6h_A 439 VYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIY 516 (679)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHh
Confidence 8888888899999999999999876 22 2233343333323333 5589999999999985 45567777788888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCC--ChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 037911 533 EKDVNKAEALLGFFAKKFQIY--DTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMIHSL 600 (609)
Q Consensus 533 ~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 600 (609)
.|+.+.|..+|+........+ ....|..++..-.+.|+.+.+.++.+++.+. .|+......+++-|
T Consensus 517 ~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 517 VNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp HTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence 999999999999999763211 2367888888888999999999999999977 56666666666554
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.58 E-value=4.1e-13 Score=130.68 Aligned_cols=252 Identities=13% Similarity=0.086 Sum_probs=202.0
Q ss_pred CCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHhhCCCCC
Q 037911 160 PHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNC-IDQCWQVYEEMGRIGICP 238 (609)
Q Consensus 160 ~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~ 238 (609)
|....++..+.. .+...|++++|+..|+++++.. +.+..+|+.+..++...|+ +++|+..|++..+.. +-
T Consensus 94 p~~~~a~~~lg~-------~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~ 164 (382)
T 2h6f_A 94 DKFRDVYDYFRA-------VLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PK 164 (382)
T ss_dssp HHHHHHHHHHHH-------HHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TT
T ss_pred hhhHHHHHHHHH-------HHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CC
Confidence 345566666666 7889999999999999999875 5678899999999999997 999999999998853 44
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHH
Q 037911 239 NTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMN 318 (609)
Q Consensus 239 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 318 (609)
+...|..+..++...|++++|+..|+++++.. +-+...|..+..++...|++++|+..|+++++.++. +...|+.+..
T Consensus 165 ~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~ 242 (382)
T 2h6f_A 165 NYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYF 242 (382)
T ss_dssp CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 67889999999999999999999999999875 347888999999999999999999999999987665 7889999999
Q ss_pred HHHh-cCCHHHH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHCCCccCHHHHHHHHHHH
Q 037911 319 GLCK-EGKVREA-----HQLFHRMVHRGLSPDIVSYNTLIFAYCKEG--KMQESKSLLYEMMGNGIYPDTFTCQIIVQGY 390 (609)
Q Consensus 319 ~~~~-~~~~~~a-----~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 390 (609)
++.+ .|..++| +..|++..+.. +-+...|+.+...+...| ++++|.+.+.++ +. .+.+...+..+...|
T Consensus 243 ~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~ 319 (382)
T 2h6f_A 243 VISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIY 319 (382)
T ss_dssp HHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHH
T ss_pred HHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHH
Confidence 9998 5665777 48888887753 235678888888888877 688999998887 33 344667788888888
Q ss_pred HccC---------CHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHH
Q 037911 391 GKEG---------RLLSALNLVVEL-QRFGVSISRDIYDYLIVALC 426 (609)
Q Consensus 391 ~~~~---------~~~~A~~~~~~~-~~~~~~~~~~~~~~ll~~~~ 426 (609)
.+.| ..++|+++++++ .+.+ +.....|..+...+.
T Consensus 320 ~~~~~~~~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 320 EDMLENQCDNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHH
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHHH
Confidence 8764 258899999998 5553 334455555554443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.58 E-value=9.1e-13 Score=119.09 Aligned_cols=203 Identities=10% Similarity=0.033 Sum_probs=120.2
Q ss_pred CcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH
Q 037911 161 HSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNT 240 (609)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 240 (609)
.+...+..+.. .+...|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+.
T Consensus 6 ~~~~~~~~~~~-------~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~ 76 (225)
T 2vq2_A 6 QVSNIKTQLAM-------EYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSA 76 (225)
T ss_dssp HHHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred ccHHHHHHHHH-------HHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCh
Confidence 34455555555 6677777777777777776643 3456666666667777777777777777665532 3345
Q ss_pred HHHHHHHHHHHHc-CChHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHH
Q 037911 241 HTFNILTHVFCKN-GDVDKVNGFLEKIEEEGFDPD-LVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMN 318 (609)
Q Consensus 241 ~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 318 (609)
.++..+...+... |++++|...++++.+.+..|+ ...+..+..++...|++++|+..++++.+.... +...+..+..
T Consensus 77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~ 155 (225)
T 2vq2_A 77 EINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELAR 155 (225)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHH
Confidence 5666666666666 666666666666665222222 445556666666666666666666666554322 3455555666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037911 319 GLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMG 373 (609)
Q Consensus 319 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 373 (609)
.+.+.|++++|...++++.+.....+...+..+...+...|+.+.|..+++.+.+
T Consensus 156 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 156 TKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 6666666666666666655542112444455555555566666666666655543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-12 Score=121.11 Aligned_cols=192 Identities=13% Similarity=0.034 Sum_probs=112.4
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDK 258 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (609)
.|...|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++
T Consensus 46 ~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~ 123 (252)
T 2ho1_A 46 GYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKRYEE 123 (252)
T ss_dssp HHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhHHHH
Confidence 5666777777777777766643 3455666666666666666666666666665532 2345556666666666666666
Q ss_pred HHHHHHHHHHcCCCC-CHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037911 259 VNGFLEKIEEEGFDP-DLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMV 337 (609)
Q Consensus 259 a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 337 (609)
|.+.++++.+.+..| +...+..+...+...|++++|.+.|++..+.... +...+..+...+...|++++|...++++.
T Consensus 124 A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 202 (252)
T 2ho1_A 124 AYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVPARQYYDLFA 202 (252)
T ss_dssp HHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666666665522223 3445555556666666666666666666554322 34555555666666666666666666655
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 037911 338 HRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGN 374 (609)
Q Consensus 338 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 374 (609)
+.. +.+...+..+...+...|+.++|.+.++++.+.
T Consensus 203 ~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 203 QGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp TTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 532 234445555555555666666666666655543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.8e-13 Score=125.50 Aligned_cols=201 Identities=11% Similarity=0.088 Sum_probs=99.3
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCC
Q 037911 125 TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPS 204 (609)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 204 (609)
.+..|..++..+...|++++|...++++++. .|.+...+..+.. .|...|++++|++.|+++.+.. +.+
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~---~~~~~~~~~~la~-------~~~~~~~~~~A~~~~~~~~~~~-~~~ 90 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE---NKEDAIPYINFAN-------LLSSVNELERALAFYDKALELD-SSA 90 (243)
T ss_dssp --------------------CCTTHHHHHTT---CTTCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh---CcccHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHHcC-Ccc
Confidence 4555555666666666666666666666543 3344555555555 5666666666666666665543 334
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 037911 205 IVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISS 284 (609)
Q Consensus 205 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 284 (609)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 168 (243)
T 2q7f_A 91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMC 168 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 5555555666666666666666666655432 2344555555555566666666666666555442 2244455555555
Q ss_pred HHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037911 285 YCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHR 339 (609)
Q Consensus 285 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 339 (609)
+...|++++|++.|+++.+.... +..++..+...+...|++++|...++++.+.
T Consensus 169 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 169 LANEGMLDEALSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 55555555555555555544322 3445555555555555555555555555543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.55 E-value=2.9e-10 Score=118.06 Aligned_cols=441 Identities=9% Similarity=0.004 Sum_probs=292.2
Q ss_pred HHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCC--
Q 037911 108 SALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGL-- 185 (609)
Q Consensus 108 ~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~-- 185 (609)
..+.-|+..+.. .+.|..+|..++..+.+.+.++.|..+|+.++.. .|.....+...+. .-.+.|.
T Consensus 50 d~i~~lE~~l~~--np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~---fP~~~~lW~~Yi~-------~E~~~~~~~ 117 (679)
T 4e6h_A 50 DVIGKLNDMIEE--QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR---FPLMANIWCMRLS-------LEFDKMEEL 117 (679)
T ss_dssp CHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH-------HHHTC--CC
T ss_pred HHHHHHHHHHHH--CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH---CCCCHHHHHHHHH-------HHHhhCCcc
Confidence 344444444432 2468899999999998889999999999999976 5667777777776 5567777
Q ss_pred -HHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCh--------HHHHHHHHHHhh-CCC-CCC-HHHHHHHHHHHH-
Q 037911 186 -IRESFKTFRKTLDVG-FQPSIVSCNFLLNGLLKLNCI--------DQCWQVYEEMGR-IGI-CPN-THTFNILTHVFC- 251 (609)
Q Consensus 186 -~~~A~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~--------~~a~~~~~~m~~-~~~-~~~-~~~~~~l~~~~~- 251 (609)
++.+.++|++.+... .+|++..|...+....+.++. +.+.++|+.... .|. .++ ...|...+....
T Consensus 118 ~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~ 197 (679)
T 4e6h_A 118 DAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEH 197 (679)
T ss_dssp CHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHh
Confidence 999999999998753 138888888888766665543 334577776543 455 443 456666665433
Q ss_pred --------HcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh-------------cCCHhHHHHHHHHHhh--CCcc-
Q 037911 252 --------KNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCK-------------KGRLNDAFYLYRIMYR--RNVL- 307 (609)
Q Consensus 252 --------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------------~g~~~~a~~~~~~~~~--~~~~- 307 (609)
..++++.+..+|+.+.......-..+|......--. ..+++.|...+.++.. .++.
T Consensus 198 ~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r 277 (679)
T 4e6h_A 198 WKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKR 277 (679)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred ccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhh
Confidence 234577888888888853211112333222111101 1123445555554332 1110
Q ss_pred --CC--------------------HhhHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 037911 308 --PD--------------------LVTYTTLMNGLCKEG-------KVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKE 358 (609)
Q Consensus 308 --p~--------------------~~~~~~ll~~~~~~~-------~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 358 (609)
|. ...|...+.---..+ ..+.+..+|++.... ++-+...|...+..+...
T Consensus 278 ~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~ 356 (679)
T 4e6h_A 278 NLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEK 356 (679)
T ss_dssp CCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHH
T ss_pred ccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhc
Confidence 11 123444443322222 123456778888765 344677888888888888
Q ss_pred CChHHHH-HHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC---------CCC------------HH
Q 037911 359 GKMQESK-SLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGV---------SIS------------RD 416 (609)
Q Consensus 359 g~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---------~~~------------~~ 416 (609)
|+.++|. .+|+..... ++.+...|...+....+.|++++|..+|+++.+... .|+ ..
T Consensus 357 ~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~ 435 (679)
T 4e6h_A 357 NTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTY 435 (679)
T ss_dssp SCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHH
Confidence 9999997 999999864 344566677888888899999999999999876410 131 33
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037911 417 IYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKC-DSVADALLLKDEMVDRNIKPSLSTYRALICCF 495 (609)
Q Consensus 417 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 495 (609)
+|...+....+.|+.+.|..+|.+....-.......|...+..-.+. ++.+.|.++|+..++. ..-+...|...+...
T Consensus 436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe 514 (679)
T 4e6h_A 436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFL 514 (679)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHH
Confidence 67777788888889999999999997651122334444333333343 5599999999999876 334566677888878
Q ss_pred hcCCCHhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHH
Q 037911 496 CGIGRSGEAVSLMDEMLESGMLP--DSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMF 565 (609)
Q Consensus 496 ~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 565 (609)
...|+.+.|..+|++++.....+ ....|...+..-.+.|+.+.+.++.+++.+. .|+......+++-|
T Consensus 515 ~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 515 IYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred HhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence 88899999999999998753211 3457888888888999999999999999988 56655555555544
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.9e-13 Score=133.73 Aligned_cols=279 Identities=14% Similarity=0.088 Sum_probs=182.6
Q ss_pred CCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCC-cHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhC--
Q 037911 123 KPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPH-SVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDV-- 199 (609)
Q Consensus 123 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-- 199 (609)
......+...+..+...|++++|...|+++++..+..+. ...++..+.. .|...|++++|+..++++.+.
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~-------~~~~~g~~~~A~~~~~~al~~~~ 78 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGN-------AYFYLHDYAKALEYHHHDLTLAR 78 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-------HHHHhcCHHHHHHHHHHHHHHHH
Confidence 346667788899999999999999999999987222111 1345666666 889999999999999987652
Q ss_pred --CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC-CCC----HHHHHHHHHHHHHcCC----------------
Q 037911 200 --GFQ-PSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGI-CPN----THTFNILTHVFCKNGD---------------- 255 (609)
Q Consensus 200 --~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~l~~~~~~~g~---------------- 255 (609)
+.. ....++..+...+...|++++|...+++..+... .++ ..++..+...+...|+
T Consensus 79 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~ 158 (406)
T 3sf4_A 79 TIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEE 158 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHH
T ss_pred hccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhh
Confidence 211 2255677788888899999999998888765210 011 3467777888888888
Q ss_pred ----hHHHHHHHHHHHHc----CCCC-CHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCcc-CC----HhhHHHHHHHHH
Q 037911 256 ----VDKVNGFLEKIEEE----GFDP-DLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVL-PD----LVTYTTLMNGLC 321 (609)
Q Consensus 256 ----~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-p~----~~~~~~ll~~~~ 321 (609)
+++|...+++..+. +..+ ...++..+...+...|++++|++.+++..+.... ++ ..++..+...+.
T Consensus 159 a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 238 (406)
T 3sf4_A 159 VRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI 238 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 88888887776542 1111 1345677777778888888888888777643111 11 235666777777
Q ss_pred hcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCcc-CHHHHHHHHHHHH
Q 037911 322 KEGKVREAHQLFHRMVHR----GLSPD-IVSYNTLIFAYCKEGKMQESKSLLYEMMGN----GIYP-DTFTCQIIVQGYG 391 (609)
Q Consensus 322 ~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~ 391 (609)
..|++++|...+++..+. +..+. ..++..+...|...|++++|...+++..+. +..+ ...++..+...|.
T Consensus 239 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 318 (406)
T 3sf4_A 239 FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYT 318 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 777777777777776542 11101 345666667777777777777777766542 1011 1345556666666
Q ss_pred ccCCHHHHHHHHHHHHH
Q 037911 392 KEGRLLSALNLVVELQR 408 (609)
Q Consensus 392 ~~~~~~~A~~~~~~~~~ 408 (609)
..|++++|...+++..+
T Consensus 319 ~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 319 ALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 66666666666665543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.9e-13 Score=135.04 Aligned_cols=273 Identities=13% Similarity=0.091 Sum_probs=189.0
Q ss_pred HhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcH----HhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhC---
Q 037911 127 SNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSV----DVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDV--- 199 (609)
Q Consensus 127 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--- 199 (609)
..+..+...+...|++++|+..|+++++.. |.+. .++..+.. .|...|++++|+..|+++.+.
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~~~lg~-------~~~~~g~~~~A~~~~~~al~~~~~ 118 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG---TEDLRTLSAIYSQLGN-------AYFYLGDYNKAMQYHKHDLTLAKS 118 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CSCHHHHHHHHHHHHH-------HHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc---ccChhHHHHHHHHHHH-------HHHHCCCHHHHHHHHHHHHHHHHH
Confidence 344556777888888999999888888762 2232 35556666 788889999999988887653
Q ss_pred -C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC-----CCCCHHHHHHHHHHHHHcCC-----------------
Q 037911 200 -G-FQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIG-----ICPNTHTFNILTHVFCKNGD----------------- 255 (609)
Q Consensus 200 -~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-----~~~~~~~~~~l~~~~~~~g~----------------- 255 (609)
+ .+....++..+...+...|++++|...+++..+.. .+....++..+...|...|+
T Consensus 119 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~ 198 (411)
T 4a1s_A 119 MNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA 198 (411)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH
T ss_pred ccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH
Confidence 1 12345567788888889999999999888875531 11224567778888888888
Q ss_pred hHHHHHHHHHHHHc----CCCC-CHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCcc-CC----HhhHHHHHHHHHhcCC
Q 037911 256 VDKVNGFLEKIEEE----GFDP-DLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVL-PD----LVTYTTLMNGLCKEGK 325 (609)
Q Consensus 256 ~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-p~----~~~~~~ll~~~~~~~~ 325 (609)
+++|.+.+++..+. +..+ ...++..+...|...|++++|++.+++..+.... ++ ..++..+...+...|+
T Consensus 199 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 278 (411)
T 4a1s_A 199 LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQ 278 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcC
Confidence 88888888776542 1111 2346777788888889998888888887653211 11 2367778888888888
Q ss_pred HHHHHHHHHHHHHCCC----C-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-----CccCHHHHHHHHHHHHccCC
Q 037911 326 VREAHQLFHRMVHRGL----S-PDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNG-----IYPDTFTCQIIVQGYGKEGR 395 (609)
Q Consensus 326 ~~~a~~~~~~m~~~g~----~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~ 395 (609)
+++|...+++..+... . ....++..+...+...|++++|...+++.++.. ......++..+...|...|+
T Consensus 279 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 358 (411)
T 4a1s_A 279 FEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGG 358 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcc
Confidence 8888888887765310 0 114566777788888888888888888776431 01113456677777788888
Q ss_pred HHHHHHHHHHHHHC
Q 037911 396 LLSALNLVVELQRF 409 (609)
Q Consensus 396 ~~~A~~~~~~~~~~ 409 (609)
+++|...+++..+.
T Consensus 359 ~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 359 HERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888777654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=6.1e-13 Score=121.93 Aligned_cols=205 Identities=9% Similarity=0.018 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 037911 381 FTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESL 460 (609)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 460 (609)
..+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...+++..... +.+...+..+...+
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVY 101 (243)
T ss_dssp ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHH
Confidence 334444444555555555555555554433 2244555555555555555555555555554332 23556666667777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 037911 461 CKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAE 540 (609)
Q Consensus 461 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 540 (609)
...|++++|.++++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHH
Confidence 777777777777777765432 355666667777777777777777777776542 345667777777777777888888
Q ss_pred HHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh
Q 037911 541 ALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLT 592 (609)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 592 (609)
+.++.+.+.. +.+..++..++.+|...|++++|.+.++++++. .|+...
T Consensus 180 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~~ 228 (243)
T 2q7f_A 180 SQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI--QPDHML 228 (243)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH--CTTCHH
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc--CcchHH
Confidence 7777777653 334566777777788888888888888877754 444433
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-12 Score=126.35 Aligned_cols=277 Identities=13% Similarity=0.091 Sum_probs=177.2
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCC-cHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhC----C
Q 037911 126 SSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPH-SVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDV----G 200 (609)
Q Consensus 126 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~----~ 200 (609)
...+...+..+...|++++|...++++++..+..+. ....+..+.. .|...|++++|++.++++.+. +
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~-------~~~~~g~~~~A~~~~~~al~~~~~~~ 77 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGN-------AYFYLHDYAKALEYHHHDLTLARTIG 77 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHHHhhccc
Confidence 345566778888899999999999999887222111 0345666666 788999999999998887642 1
Q ss_pred C-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC-CCC----HHHHHHHHHHHHHcCC-------------------
Q 037911 201 F-QPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGI-CPN----THTFNILTHVFCKNGD------------------- 255 (609)
Q Consensus 201 ~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~l~~~~~~~g~------------------- 255 (609)
. +....++..+...+...|++++|...+++..+... .++ ..++..+...+...|+
T Consensus 78 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 157 (338)
T 3ro2_A 78 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRN 157 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHH
Confidence 1 12355677788888888999999988888754210 112 3467777788888888
Q ss_pred -hHHHHHHHHHHHHc----CCCC-CHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCc-----cCCHhhHHHHHHHHHhcC
Q 037911 256 -VDKVNGFLEKIEEE----GFDP-DLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNV-----LPDLVTYTTLMNGLCKEG 324 (609)
Q Consensus 256 -~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----~p~~~~~~~ll~~~~~~~ 324 (609)
+++|.+.+++.... +..+ ...++..+...+...|++++|.+.+++..+... .....++..+...+...|
T Consensus 158 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g 237 (338)
T 3ro2_A 158 ALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG 237 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC
Confidence 88888877765432 1111 134566777777888888888888877764311 111235666777777777
Q ss_pred CHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-----CccCHHHHHHHHHHHHccC
Q 037911 325 KVREAHQLFHRMVHRGL-SPD----IVSYNTLIFAYCKEGKMQESKSLLYEMMGNG-----IYPDTFTCQIIVQGYGKEG 394 (609)
Q Consensus 325 ~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~ 394 (609)
++++|...+++..+... ..+ ..++..+...+...|++++|...+++..+.. ......++..+...|.+.|
T Consensus 238 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g 317 (338)
T 3ro2_A 238 EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALG 317 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcC
Confidence 77777777777654210 011 3455666667777777777777777665421 0111234555666666666
Q ss_pred CHHHHHHHHHHHHHC
Q 037911 395 RLLSALNLVVELQRF 409 (609)
Q Consensus 395 ~~~~A~~~~~~~~~~ 409 (609)
++++|...+++..+.
T Consensus 318 ~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 318 NHDQAMHFAEKHLEI 332 (338)
T ss_dssp CHHHHHHHHHHHHHC
T ss_pred ChHHHHHHHHHHHHH
Confidence 666666666666543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.5e-12 Score=129.50 Aligned_cols=228 Identities=15% Similarity=0.095 Sum_probs=142.6
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhC----CCCC-CHHHHHHHHHH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPS----IVSCNFLLNGLLKLNCIDQCWQVYEEMGRI----GICP-NTHTFNILTHV 249 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~ 249 (609)
.+...|++++|+..|+++.+.+ +.+ ...|..+...+...|++++|...+++.... +-.| ...++..+...
T Consensus 18 ~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 96 (406)
T 3sf4_A 18 RLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNT 96 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 7888999999999999988864 233 356777888888889999998888876432 1111 24566777778
Q ss_pred HHHcCChHHHHHHHHHHHHcCCC-CC----HHhHHHHHHHHHhcCC--------------------HhHHHHHHHHHhhC
Q 037911 250 FCKNGDVDKVNGFLEKIEEEGFD-PD----LVTYNTLISSYCKKGR--------------------LNDAFYLYRIMYRR 304 (609)
Q Consensus 250 ~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~--------------------~~~a~~~~~~~~~~ 304 (609)
+...|++++|...+++..+.... ++ ..++..+...|...|+ +++|++.+++..+.
T Consensus 97 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 176 (406)
T 3sf4_A 97 LKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSL 176 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 88888888888888876653100 11 3366777777777888 77777777765532
Q ss_pred ----CccC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 037911 305 ----NVLP-DLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGL-SPD----IVSYNTLIFAYCKEGKMQESKSLLYEMMGN 374 (609)
Q Consensus 305 ----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 374 (609)
+..| ...++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...+++..+.
T Consensus 177 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 256 (406)
T 3sf4_A 177 VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLL 256 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 1111 133566666677777777777777766654210 011 235566666666677777777666665532
Q ss_pred ----CCcc-CHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 037911 375 ----GIYP-DTFTCQIIVQGYGKEGRLLSALNLVVELQ 407 (609)
Q Consensus 375 ----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 407 (609)
+..+ ...++..+...|...|++++|...+++..
T Consensus 257 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 257 ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 1000 03345555555666666666666655543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.8e-12 Score=127.86 Aligned_cols=272 Identities=12% Similarity=0.025 Sum_probs=125.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHc----CC-CCCHHhHHHH
Q 037911 211 LLNGLLKLNCIDQCWQVYEEMGRIGICPNT----HTFNILTHVFCKNGDVDKVNGFLEKIEEE----GF-DPDLVTYNTL 281 (609)
Q Consensus 211 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~l 281 (609)
+...+...|++++|...|+++.+.+ +.+. ..+..+...+...|++++|...+++..+. +. .....++..+
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 3334444455555555555544421 1111 23444444555555555555555544332 00 1122344555
Q ss_pred HHHHHhcCCHhHHHHHHHHHhhCC-----ccCCHhhHHHHHHHHHhcCC-----------------HHHHHHHHHHHHHC
Q 037911 282 ISSYCKKGRLNDAFYLYRIMYRRN-----VLPDLVTYTTLMNGLCKEGK-----------------VREAHQLFHRMVHR 339 (609)
Q Consensus 282 i~~~~~~g~~~~a~~~~~~~~~~~-----~~p~~~~~~~ll~~~~~~~~-----------------~~~a~~~~~~m~~~ 339 (609)
...|...|++++|+..+++..+.. ......++..+...+...|+ +++|.+.+++..+.
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 555555556555555555544320 01123345555555555555 55555555554331
Q ss_pred ----CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCc-cC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 037911 340 ----GL-SPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIY-PD----TFTCQIIVQGYGKEGRLLSALNLVVELQRF 409 (609)
Q Consensus 340 ----g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 409 (609)
+. .....++..+...+...|++++|...+++..+.... .+ ...+..+...|...|++++|+..+++..+.
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 10 011234555556666666666666666655432100 01 124555555556666666666655554332
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCC
Q 037911 410 GVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDR----NI-KPS 484 (609)
Q Consensus 410 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~p~ 484 (609)
... .++ ......++..+...+...|++++|...+++..+. +. ...
T Consensus 293 ~~~---------------~~~---------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 342 (411)
T 4a1s_A 293 AVE---------------LGE---------------REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGE 342 (411)
T ss_dssp HHH---------------TTC---------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHH---------------cCC---------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHH
Confidence 100 000 0001234444555555555555555555554422 10 011
Q ss_pred HHHHHHHHHHHhcCCCHhHHHHHHHHHHH
Q 037911 485 LSTYRALICCFCGIGRSGEAVSLMDEMLE 513 (609)
Q Consensus 485 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 513 (609)
..++..+..+|...|++++|...++++.+
T Consensus 343 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 343 ARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 23455555666666666666666666654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.2e-12 Score=124.53 Aligned_cols=273 Identities=14% Similarity=0.054 Sum_probs=205.3
Q ss_pred HHHHHHhcCCChhHHHHHHHHhhhcCCCCCC--HHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCC---CCCcHHhHHHH
Q 037911 95 ISRVLLRCQSDSVSALTFFNWVKNDLEIKPT--SSNYCLIVHILAWNNKFSFAMKMLCELVELVKD---CPHSVDVFQDL 169 (609)
Q Consensus 95 ~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~~l 169 (609)
+.+......|+++.|+.+|+.+.......+. ...|..++..+...|++++|...++++++.... .+.....+..+
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 4455566779999999999999974211111 477889999999999999999999998765221 22334556666
Q ss_pred hhccccchhHHHHhCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCC--------------------hHHH
Q 037911 170 ISCTEDCNWAYVKVGLIRESFKTFRKTLDVGF-QPS----IVSCNFLLNGLLKLNC--------------------IDQC 224 (609)
Q Consensus 170 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~ll~~~~~~~~--------------------~~~a 224 (609)
.. .|...|++++|+..++++.+... .++ ..++..+...+...|+ +++|
T Consensus 90 ~~-------~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 90 GN-------TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HH-------HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HH-------HHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 66 89999999999999999875311 112 3478888889999999 9999
Q ss_pred HHHHHHHhhC----C-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CC----HHhHHHHHHHHHhcCCHhHH
Q 037911 225 WQVYEEMGRI----G-ICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFD-PD----LVTYNTLISSYCKKGRLNDA 294 (609)
Q Consensus 225 ~~~~~~m~~~----~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~a 294 (609)
.+.+++.... + .......+..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999886542 1 1112456788888999999999999999987654110 11 33788888999999999999
Q ss_pred HHHHHHHhhCCcc-----CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHHcCChHHH
Q 037911 295 FYLYRIMYRRNVL-----PDLVTYTTLMNGLCKEGKVREAHQLFHRMVHR----GL-SPDIVSYNTLIFAYCKEGKMQES 364 (609)
Q Consensus 295 ~~~~~~~~~~~~~-----p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~~~~~li~~~~~~g~~~~A 364 (609)
...+++..+.... ....++..+...+...|++++|...+++..+. +. .....++..+...|.+.|++++|
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 322 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 322 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 9999988753211 11457788889999999999999999988754 11 11144677889999999999999
Q ss_pred HHHHHHHHHC
Q 037911 365 KSLLYEMMGN 374 (609)
Q Consensus 365 ~~~~~~~~~~ 374 (609)
...+++..+.
T Consensus 323 ~~~~~~a~~~ 332 (338)
T 3ro2_A 323 MHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 9999998865
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.47 E-value=6e-11 Score=112.85 Aligned_cols=218 Identities=10% Similarity=0.064 Sum_probs=157.0
Q ss_pred hHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHH-------HhCCH-------HHHHHHHHHHHhCCCCCCHHHH
Q 037911 143 SFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYV-------KVGLI-------RESFKTFRKTLDVGFQPSIVSC 208 (609)
Q Consensus 143 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-------~~g~~-------~~A~~~~~~~~~~~~~~~~~~~ 208 (609)
++|...|++++.. .|.+..++..++. .+. +.|++ ++|+.+|++.++.-.+.+...|
T Consensus 33 ~~a~~~~~~al~~---~p~~~~~w~~~~~-------~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~ 102 (308)
T 2ond_A 33 KRVMFAYEQCLLV---LGHHPDIWYEAAQ-------YLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLY 102 (308)
T ss_dssp HHHHHHHHHHHHH---HTTCHHHHHHHHH-------HHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHH---cCCCHHHHHHHHH-------HHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHH
Confidence 6788999999976 4667888877776 443 35775 8999999999883124567788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-HH-HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 037911 209 NFLLNGLLKLNCIDQCWQVYEEMGRIGICPN-TH-TFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYC 286 (609)
Q Consensus 209 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 286 (609)
..++..+.+.|++++|.++|++..+. .|+ .. .|..++..+.+.|++++|..+|++..+.+ +.+...|........
T Consensus 103 ~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~ 179 (308)
T 2ond_A 103 FAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEY 179 (308)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 88999999999999999999998874 454 33 78888888888888888888888888763 223344443332222
Q ss_pred -hcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHHcCChH
Q 037911 287 -KKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRG-LSP--DIVSYNTLIFAYCKEGKMQ 362 (609)
Q Consensus 287 -~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g-~~p--~~~~~~~li~~~~~~g~~~ 362 (609)
..|+.++|..+|++..+..+. +...|..++..+.+.|++++|..+|++..+.. +.| ....|..++....+.|+.+
T Consensus 180 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~ 258 (308)
T 2ond_A 180 YCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLA 258 (308)
T ss_dssp HTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 257888888888877765332 56677777777777788888888888877752 344 3456777777777777777
Q ss_pred HHHHHHHHHHHC
Q 037911 363 ESKSLLYEMMGN 374 (609)
Q Consensus 363 ~A~~~~~~~~~~ 374 (609)
.|..+++++.+.
T Consensus 259 ~a~~~~~~a~~~ 270 (308)
T 2ond_A 259 SILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777777654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.46 E-value=7.7e-12 Score=123.34 Aligned_cols=227 Identities=8% Similarity=-0.060 Sum_probs=132.2
Q ss_pred HHHHcCChHHHHHHHHHHHHC----CCcc-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC------CCCHHHHHHHH
Q 037911 354 AYCKEGKMQESKSLLYEMMGN----GIYP-DTFTCQIIVQGYGKEGRLLSALNLVVELQRFGV------SISRDIYDYLI 422 (609)
Q Consensus 354 ~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~~ll 422 (609)
.+...|++++|...+++..+. +-.+ ...++..+...|...|++++|+..+.+..+... .....++..+.
T Consensus 112 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 191 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA 191 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 334445555555555554432 1011 123344445555555555555555544433210 00123445555
Q ss_pred HHHHhcCChHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHH
Q 037911 423 VALCQDNRPFAATSLLERIGQD----GY-VPSLEIYNELMESLCKCDSVADALLLKDEMVDR----NI-KPSLSTYRALI 492 (609)
Q Consensus 423 ~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~p~~~~~~~li 492 (609)
.++...|++++|...+++.... +. .....++..+...|...|++++|...+++..+. +. .....++..+.
T Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 271 (383)
T 3ulq_A 192 TNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLIT 271 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Confidence 5555666666666555554211 10 111246677788888888888888888877752 22 23355677788
Q ss_pred HHHhcCCCHhHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHHcCCCCC-hhcHHHHHHH
Q 037911 493 CCFCGIGRSGEAVSLMDEMLES----GMLPDSQICRVLINGYCMEKD---VNKAEALLGFFAKKFQIYD-TESYNAVFNM 564 (609)
Q Consensus 493 ~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~ 564 (609)
.++...|++++|...++++.+. +-+.....+..+...+...|+ +++|..++++. +..++ ...+..+...
T Consensus 272 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 272 QIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHH
Confidence 8888888888888888887653 111112235667788888888 66666666654 22222 3467778888
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 037911 565 FAEDGDLSKLMELQKRFLR 583 (609)
Q Consensus 565 ~~~~g~~~~A~~~~~~m~~ 583 (609)
|...|++++|.+.+++..+
T Consensus 349 y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 9999999999999988875
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.8e-11 Score=106.79 Aligned_cols=167 Identities=16% Similarity=0.193 Sum_probs=99.3
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCC
Q 037911 125 TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPS 204 (609)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 204 (609)
++..|..++.++...|++++|++.|+++++. .|.+...+..+.. .|.+.|++++|+..++++.... +.+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~-------~~~~~~~~~~a~~~~~~~~~~~-~~~ 72 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA---DPNNVETLLKLGK-------TYMDIGLPNDAIESLKKFVVLD-TTS 72 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHC-CCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHH-------HHHHCCCHHHHHHHHHHHHhcC-chh
Confidence 4556666666666666666666666666655 3455566666655 6666666666666666666543 344
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 037911 205 IVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISS 284 (609)
Q Consensus 205 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 284 (609)
...+..+...+...++++.|.+.+++..+.. +.+...+..+...+.+.|++++|++.|++..+.. +.+..+|..+..+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~ 150 (184)
T 3vtx_A 73 AEAYYILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLA 150 (184)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHH
Confidence 5555555566666666666666666655432 2345555556666666666666666666655543 2244555556666
Q ss_pred HHhcCCHhHHHHHHHHHhhC
Q 037911 285 YCKKGRLNDAFYLYRIMYRR 304 (609)
Q Consensus 285 ~~~~g~~~~a~~~~~~~~~~ 304 (609)
|.+.|++++|++.|++..+.
T Consensus 151 ~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 151 YEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHhC
Confidence 66666666666666655554
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.2e-11 Score=120.10 Aligned_cols=230 Identities=9% Similarity=-0.005 Sum_probs=126.3
Q ss_pred HhCCChhHHHHHHHHHHHhhCCCCCcHH--hHHHHhhccccchhHHHHhCCHHHHH-----------HHHHHHHhCCCCC
Q 037911 137 AWNNKFSFAMKMLCELVELVKDCPHSVD--VFQDLISCTEDCNWAYVKVGLIRESF-----------KTFRKTLDVGFQP 203 (609)
Q Consensus 137 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~g~~~~A~-----------~~~~~~~~~~~~~ 203 (609)
.+.+++++|..+++++.+..+....+.. .|-.++... ...-.+.++.+. +.++.+.... .
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r-----~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~ 95 (383)
T 3ulq_A 23 IRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFR-----HNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--A 95 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHH-----HHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--H
T ss_pred HHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH-----HHHHHhhcCcccccccccccchhhHHHHHHhcC--C
Confidence 4678889999998888776444322332 333333210 112223333333 4444443311 1
Q ss_pred CHHH------HHHHHHHHHhcCChHHHHHHHHHHhhC----CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 037911 204 SIVS------CNFLLNGLLKLNCIDQCWQVYEEMGRI----GICP-NTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFD 272 (609)
Q Consensus 204 ~~~~------~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 272 (609)
+... +......+...|++++|...|++..+. +-.+ ...++..+...+...|++++|...+++..+....
T Consensus 96 ~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~ 175 (383)
T 3ulq_A 96 RLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKE 175 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred CchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 1111 122445566778888888888777653 1111 2356667777777777777777777776543100
Q ss_pred -C-----CHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCcc-----CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--
Q 037911 273 -P-----DLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVL-----PDLVTYTTLMNGLCKEGKVREAHQLFHRMVHR-- 339 (609)
Q Consensus 273 -~-----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-----p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-- 339 (609)
+ ...+++.+...|...|++++|++.|++..+.... ....++..+...+...|++++|...+++..+.
T Consensus 176 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 255 (383)
T 3ulq_A 176 HEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFE 255 (383)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 1 1345666667777777777777777666542110 01235556666666666666666666666551
Q ss_pred --CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037911 340 --GL-SPDIVSYNTLIFAYCKEGKMQESKSLLYEMMG 373 (609)
Q Consensus 340 --g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 373 (609)
+. +....++..+...+.+.|++++|...+++..+
T Consensus 256 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 256 ESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp HTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 12 22344556666666666666666666666543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.44 E-value=2.3e-11 Score=105.97 Aligned_cols=167 Identities=11% Similarity=0.119 Sum_probs=120.9
Q ss_pred cHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHH
Q 037911 162 SVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTH 241 (609)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 241 (609)
+..+|..+.. .|.+.|++++|++.|+++++.. +-+..+|..+..++.+.|++++|...++...... +.+..
T Consensus 4 ~~~iy~~lG~-------~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~ 74 (184)
T 3vtx_A 4 TTTIYMDIGD-------KKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAE 74 (184)
T ss_dssp CHHHHHHHHH-------HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHH
T ss_pred HHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHH
Confidence 5667777777 7888888888888888887765 4567777777888888888888888887776642 34456
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHH
Q 037911 242 TFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLC 321 (609)
Q Consensus 242 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~ 321 (609)
.+..+...+...++++.+...+.+..+.. +.+...+..+...+.+.|++++|++.|++..+..+. +..+|..+..++.
T Consensus 75 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~ 152 (184)
T 3vtx_A 75 AYYILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYE 152 (184)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHH
Confidence 66667777777778888887777777653 335666777777777777777777777777765443 5666777777777
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 037911 322 KEGKVREAHQLFHRMVHR 339 (609)
Q Consensus 322 ~~~~~~~a~~~~~~m~~~ 339 (609)
+.|++++|.+.|++..+.
T Consensus 153 ~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 153 GKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HTTCHHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHHhC
Confidence 777777777777777664
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.43 E-value=6.8e-12 Score=126.91 Aligned_cols=212 Identities=12% Similarity=0.004 Sum_probs=137.9
Q ss_pred hhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCCh-hHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhC
Q 037911 106 SVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKF-SFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVG 184 (609)
Q Consensus 106 ~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g 184 (609)
.+.|+..++..... .+.+...|..+..++...|++ ++|++.|+++++. .|.....+..+.. .|...|
T Consensus 84 ~~~al~~l~~~~~~--~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~---~p~~~~a~~~lg~-------~~~~~g 151 (474)
T 4abn_A 84 MEKTLQQMEEVLGS--AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL---EPELVEAWNQLGE-------VYWKKG 151 (474)
T ss_dssp HHHHHHHHHHHHTT--CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH---CTTCHHHHHHHHH-------HHHHHT
T ss_pred HHHHHHHHHHHhcc--CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh---CCCCHHHHHHHHH-------HHHHcC
Confidence 45566666655432 234677777777777777777 7777777777765 3455666777766 777777
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---------CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc--
Q 037911 185 LIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKL---------NCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKN-- 253 (609)
Q Consensus 185 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---------~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~-- 253 (609)
++++|++.|+++++.. |+...+..+..++... |++++|.+.|++..+.. +.+...|..+..+|...
T Consensus 152 ~~~~A~~~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~ 228 (474)
T 4abn_A 152 DVTSAHTCFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYF 228 (474)
T ss_dssp CHHHHHHHHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHH
Confidence 7777777777777654 5566777777777777 77777777777766642 33456666666666666
Q ss_pred ------CChHHHHHHHHHHHHcCCC--CCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCC
Q 037911 254 ------GDVDKVNGFLEKIEEEGFD--PDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGK 325 (609)
Q Consensus 254 ------g~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 325 (609)
|++++|+..|++..+.... -+...|..+..+|...|++++|++.|++..+.... +...+..+...+...|+
T Consensus 229 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~ 307 (474)
T 4abn_A 229 NTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSR 307 (474)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred hhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHH
Confidence 6677777777776665210 25566666666666777777777777666655432 44556666666666666
Q ss_pred HHHHHHHH
Q 037911 326 VREAHQLF 333 (609)
Q Consensus 326 ~~~a~~~~ 333 (609)
+++|.+.+
T Consensus 308 ~~eAi~~~ 315 (474)
T 4abn_A 308 LTSLLESK 315 (474)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 66665544
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.43 E-value=9.1e-11 Score=111.62 Aligned_cols=219 Identities=6% Similarity=-0.038 Sum_probs=178.0
Q ss_pred hHHHHHHHHhhhcCCCCCCHHhHHHHHHHHH-------hCCCh-------hHHHHHHHHHHHhhCCCCCcHHhHHHHhhc
Q 037911 107 VSALTFFNWVKNDLEIKPTSSNYCLIVHILA-------WNNKF-------SFAMKMLCELVELVKDCPHSVDVFQDLISC 172 (609)
Q Consensus 107 ~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 172 (609)
+.|+..|+.+... .+.++..|..++..+. +.|++ ++|..+|+++++. -.|.+..++..++.
T Consensus 33 ~~a~~~~~~al~~--~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~--~~p~~~~~~~~~~~- 107 (308)
T 2ond_A 33 KRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST--LLKKNMLLYFAYAD- 107 (308)
T ss_dssp HHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT--TTTTCHHHHHHHHH-
T ss_pred HHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH--hCcccHHHHHHHHH-
Confidence 5788899888864 3557889998888876 45886 8999999999962 14567778888888
Q ss_pred cccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 037911 173 TEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIV-SCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFC 251 (609)
Q Consensus 173 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 251 (609)
.+.+.|++++|.++|+++++.. +.+.. +|..++..+.+.|++++|..+|++..+.. +.+...|........
T Consensus 108 ------~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~ 179 (308)
T 2ond_A 108 ------YEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEY 179 (308)
T ss_dssp ------HHHHTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHH
T ss_pred ------HHHhcCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 8899999999999999999854 22344 89999999999999999999999998854 344555544433322
Q ss_pred -HcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCC-ccC--CHhhHHHHHHHHHhcCCHH
Q 037911 252 -KNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRN-VLP--DLVTYTTLMNGLCKEGKVR 327 (609)
Q Consensus 252 -~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~p--~~~~~~~ll~~~~~~~~~~ 327 (609)
..|+.++|..+|++..+.. +-+...|..++..+.+.|++++|..+|++..... ..| ....|..++....+.|+.+
T Consensus 180 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~ 258 (308)
T 2ond_A 180 YCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLA 258 (308)
T ss_dssp HTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 3699999999999998763 3367889999999999999999999999999863 344 4668888899999999999
Q ss_pred HHHHHHHHHHHC
Q 037911 328 EAHQLFHRMVHR 339 (609)
Q Consensus 328 ~a~~~~~~m~~~ 339 (609)
.|..+++++.+.
T Consensus 259 ~a~~~~~~a~~~ 270 (308)
T 2ond_A 259 SILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999875
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.1e-12 Score=123.19 Aligned_cols=242 Identities=16% Similarity=0.131 Sum_probs=162.8
Q ss_pred CCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 037911 159 CPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDV-------GFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEM 231 (609)
Q Consensus 159 ~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 231 (609)
.|.....+..+.. .|...|++++|+..|+++.+. ..+....++..+...+...|++++|...+++.
T Consensus 23 ~~~~~~~~~~l~~-------~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 95 (311)
T 3nf1_A 23 IPARLRTLHNLVI-------QYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDA 95 (311)
T ss_dssp SCHHHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3455667777777 899999999999999999873 33445677888999999999999999999988
Q ss_pred hhC------CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCC-CHHhHHHHHHHHHhcCCHhHHHHH
Q 037911 232 GRI------GI-CPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEE------GFDP-DLVTYNTLISSYCKKGRLNDAFYL 297 (609)
Q Consensus 232 ~~~------~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~~~~~li~~~~~~g~~~~a~~~ 297 (609)
.+. +- +....++..+...+...|++++|...+++..+. +..| ...++..+...+...|++++|++.
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 175 (311)
T 3nf1_A 96 LAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYY 175 (311)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 653 11 233567888888999999999999999988764 2222 345678888899999999999999
Q ss_pred HHHHhhC------CccC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCH-------HHHHHHHHHHH
Q 037911 298 YRIMYRR------NVLP-DLVTYTTLMNGLCKEGKVREAHQLFHRMVHR-------GLSPDI-------VSYNTLIFAYC 356 (609)
Q Consensus 298 ~~~~~~~------~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-------g~~p~~-------~~~~~li~~~~ 356 (609)
++++.+. +..| ...++..+...+...|++++|...++++.+. ...+.. ..+..+...+.
T Consensus 176 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (311)
T 3nf1_A 176 YQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQK 255 (311)
T ss_dssp HHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchh
Confidence 9888764 1122 3456778888889999999999999888753 111111 11222223333
Q ss_pred HcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 037911 357 KEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQR 408 (609)
Q Consensus 357 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 408 (609)
..+.+.++...+....... +.+..++..+...|.+.|++++|..++++..+
T Consensus 256 ~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 256 DGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4445555555665555431 22445677777777777888877777776654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.41 E-value=8.5e-12 Score=126.18 Aligned_cols=212 Identities=10% Similarity=-0.064 Sum_probs=130.6
Q ss_pred hhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 037911 142 FSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLI-RESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNC 220 (609)
Q Consensus 142 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 220 (609)
++++...+++... ..+.....+..+.. .|...|++ ++|++.|+++++.. +.+..+|..+..+|...|+
T Consensus 84 ~~~al~~l~~~~~---~~~~~a~~~~~lg~-------~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~ 152 (474)
T 4abn_A 84 MEKTLQQMEEVLG---SAQVEAQALMLKGK-------ALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGD 152 (474)
T ss_dssp HHHHHHHHHHHHT---TCCCCHHHHHHHHH-------HHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhc---cCchhHHHHHHHHH-------HHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCC
Confidence 4455555554442 23455666666666 67777777 77777777776654 3456677777777777777
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc---
Q 037911 221 IDQCWQVYEEMGRIGICPNTHTFNILTHVFCKN---------GDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKK--- 288 (609)
Q Consensus 221 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--- 288 (609)
+++|.+.|++..+. .|+...+..+...+... |++++|++.+++..+.. +.+...|..+..+|...
T Consensus 153 ~~~A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~ 229 (474)
T 4abn_A 153 VTSAHTCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFN 229 (474)
T ss_dssp HHHHHHHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHh
Confidence 77777777777664 35566666666666666 67777777777666653 22455666666666666
Q ss_pred -----CCHhHHHHHHHHHhhCCcc--CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh
Q 037911 289 -----GRLNDAFYLYRIMYRRNVL--PDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKM 361 (609)
Q Consensus 289 -----g~~~~a~~~~~~~~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 361 (609)
|++++|++.|++..+.... -+...|..+..++...|++++|.+.|++..+.. +.+...+..+..++...|++
T Consensus 230 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~ 308 (474)
T 4abn_A 230 TGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRL 308 (474)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred hccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHH
Confidence 6666666666666654320 255566666666666666666666666665542 22344555555566666666
Q ss_pred HHHHHHH
Q 037911 362 QESKSLL 368 (609)
Q Consensus 362 ~~A~~~~ 368 (609)
++|...+
T Consensus 309 ~eAi~~~ 315 (474)
T 4abn_A 309 TSLLESK 315 (474)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 6655544
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=3e-12 Score=122.18 Aligned_cols=242 Identities=16% Similarity=0.135 Sum_probs=172.3
Q ss_pred CCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhC-----CCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHh
Q 037911 124 PTSSNYCLIVHILAWNNKFSFAMKMLCELVELVK-----DCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLD 198 (609)
Q Consensus 124 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 198 (609)
....++..++..+...|++++|..+++++++... ..+.....+..+.. .|...|++++|+..++++.+
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~-------~~~~~g~~~~A~~~~~~al~ 97 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILAL-------VYRDQNKYKDAANLLNDALA 97 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-------HHHHCCCHHHHHHHHHHHHH
Confidence 3567888899999999999999999999987421 23345566777777 89999999999999999986
Q ss_pred C------C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC------CC-CCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 037911 199 V------G-FQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRI------GI-CPNTHTFNILTHVFCKNGDVDKVNGFLE 264 (609)
Q Consensus 199 ~------~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 264 (609)
. + .+....++..+...+...|++++|...+++..+. +. +.....+..+...+...|++++|.+.++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 177 (311)
T 3nf1_A 98 IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQ 177 (311)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4 2 2334667888999999999999999999998763 21 2235678888999999999999999999
Q ss_pred HHHHc------CCCC-CHHhHHHHHHHHHhcCCHhHHHHHHHHHhhC-------CccCCHh-------hHHHHHHHHHhc
Q 037911 265 KIEEE------GFDP-DLVTYNTLISSYCKKGRLNDAFYLYRIMYRR-------NVLPDLV-------TYTTLMNGLCKE 323 (609)
Q Consensus 265 ~~~~~------~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------~~~p~~~-------~~~~ll~~~~~~ 323 (609)
++.+. +..| ...++..+...|...|++++|.+.++++.+. ...+... .+..+...+...
T Consensus 178 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (311)
T 3nf1_A 178 RALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDG 257 (311)
T ss_dssp HHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhH
Confidence 98765 2122 3457888899999999999999999998863 1111111 122222333444
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037911 324 GKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMG 373 (609)
Q Consensus 324 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 373 (609)
+.+.++...+...... .+.+..++..+..+|.+.|++++|...+++.++
T Consensus 258 ~~~~~a~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 258 TSFGEYGGWYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp CCSCCCC----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5566666666666543 133457788899999999999999999998875
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.7e-10 Score=113.40 Aligned_cols=225 Identities=9% Similarity=-0.061 Sum_probs=133.3
Q ss_pred HHHcCChHHHHHHHHHHHHCCC-cc----CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-----C-CCHHHHHHHHH
Q 037911 355 YCKEGKMQESKSLLYEMMGNGI-YP----DTFTCQIIVQGYGKEGRLLSALNLVVELQRFGV-----S-ISRDIYDYLIV 423 (609)
Q Consensus 355 ~~~~g~~~~A~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~-~~~~~~~~ll~ 423 (609)
+...|++++|...+++..+... .+ ...++..+...|...|+++.|+..+++..+... . ....++..+..
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 3445555555555555543210 01 123344455555555555555555554433210 0 01234445555
Q ss_pred HHHhcCChHHHHHHHHHHHh----CCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHHH
Q 037911 424 ALCQDNRPFAATSLLERIGQ----DGYV-PSLEIYNELMESLCKCDSVADALLLKDEMVD-----RNIKPSLSTYRALIC 493 (609)
Q Consensus 424 ~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~~li~ 493 (609)
++...|++++|...+++... .+.. ....++..+...|...|++++|...+++..+ ... ....++..+..
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~la~ 269 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD-LLPKVLFGLSW 269 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh-hHHHHHHHHHH
Confidence 55666666666665555422 1111 1234567777888888888888888888776 332 22566777888
Q ss_pred HHhcCCCHhHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHHcCCCCC-hhcHHHHHHHH
Q 037911 494 CFCGIGRSGEAVSLMDEMLESG----MLPDSQICRVLINGYCMEKD---VNKAEALLGFFAKKFQIYD-TESYNAVFNMF 565 (609)
Q Consensus 494 ~~~~~g~~~~A~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~ 565 (609)
++.+.|++++|...+++..+.. -+.....+..+...+...|+ +.+|...++.. +..++ ...+..+...|
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHHHH
Confidence 8888888888888888887631 11223345666667777777 66676666652 22222 24567788888
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 037911 566 AEDGDLSKLMELQKRFLR 583 (609)
Q Consensus 566 ~~~g~~~~A~~~~~~m~~ 583 (609)
...|++++|.+.|+++.+
T Consensus 347 ~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 999999999999888864
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.36 E-value=6.8e-10 Score=108.88 Aligned_cols=272 Identities=10% Similarity=0.105 Sum_probs=175.4
Q ss_pred HHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCH----HhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCc---HHhH
Q 037911 94 EISRVLLRCQSDSVSALTFFNWVKNDLEIKPTS----SNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHS---VDVF 166 (609)
Q Consensus 94 ~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~ 166 (609)
.+.+.+....|+++.|+..++.+..... ..+. .++..+...+...|++++|...+++.....+..+.. ...+
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3445566678999999999999887432 2222 256777888899999999999999998763332222 1223
Q ss_pred HHHhhccccchhHHHHhCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC--
Q 037911 167 QDLISCTEDCNWAYVKVGLIRESFKTFRKTLDV----GFQ--P-SIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGIC-- 237 (609)
Q Consensus 167 ~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-- 237 (609)
..+.. .+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++.....-.
T Consensus 97 ~~la~-------~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 169 (373)
T 1hz4_A 97 IQQSE-------ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ 169 (373)
T ss_dssp HHHHH-------HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHH-------HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccC
Confidence 44444 789999999999999988752 221 2 2345666778888889999999998887653211
Q ss_pred C--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHhHH----HHHHHHHhcCCHhHHHHHHHHHhhCCccCC
Q 037911 238 P--NTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPD--LVTYN----TLISSYCKKGRLNDAFYLYRIMYRRNVLPD 309 (609)
Q Consensus 238 ~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~----~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 309 (609)
+ ...++..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...+++.......+.
T Consensus 170 ~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 249 (373)
T 1hz4_A 170 PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANN 249 (373)
T ss_dssp GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTC
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcc
Confidence 1 234566777788888888888888887765321111 11111 223446678888888888877765432211
Q ss_pred ---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037911 310 ---LVTYTTLMNGLCKEGKVREAHQLFHRMVHR----GLSPDI-VSYNTLIFAYCKEGKMQESKSLLYEMMG 373 (609)
Q Consensus 310 ---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~ 373 (609)
...+..+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...+++...
T Consensus 250 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 250 HFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 223455666777777777777777766432 211122 2444455556666777777766666553
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.6e-10 Score=111.04 Aligned_cols=243 Identities=9% Similarity=0.007 Sum_probs=113.0
Q ss_pred CCHHhHHHHHHHH--HhCCChhHHHHHHHHHHHhhCCCCCcH--HhHHHHhhccccchhHHHHhCCHHHHH---------
Q 037911 124 PTSSNYCLIVHIL--AWNNKFSFAMKMLCELVELVKDCPHSV--DVFQDLISCTEDCNWAYVKVGLIRESF--------- 190 (609)
Q Consensus 124 ~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~g~~~~A~--------- 190 (609)
|+...-..+-..| ...+++++|..+++++.+.......+. ..|-.++... ...-.+.++.+.
T Consensus 8 ~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r-----~~~~~~~~~~~~~~~~~~~~~ 82 (378)
T 3q15_A 8 PSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFR-----HQLMLDYLEPGKTYGNRPTVT 82 (378)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHH-----HHHHHHTCCC--------CHH
T ss_pred cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-----HHHHHhhcCcccccccccchH
Confidence 3444444455555 678899999999998876543322222 2333333210 011111111111
Q ss_pred HHHHHHHhCCCCCC-HH---HHHHHHHHHHhcCChHHHHHHHHHHhhCCC-CCC----HHHHHHHHHHHHHcCChHHHHH
Q 037911 191 KTFRKTLDVGFQPS-IV---SCNFLLNGLLKLNCIDQCWQVYEEMGRIGI-CPN----THTFNILTHVFCKNGDVDKVNG 261 (609)
Q Consensus 191 ~~~~~~~~~~~~~~-~~---~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~l~~~~~~~g~~~~a~~ 261 (609)
+.++.+.....+.+ .. .+......+...|++++|...|++..+... .++ ..++..+...|...|++++|..
T Consensus 83 ~~l~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~ 162 (378)
T 3q15_A 83 ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMY 162 (378)
T ss_dssp HHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 33333322110001 00 122233344566777777777766654210 011 3445556666666666666666
Q ss_pred HHHHHHHcCC-----CC-CHHhHHHHHHHHHhcCCHhHHHHHHHHHhhC----Ccc-CCHhhHHHHHHHHHhcCCHHHHH
Q 037911 262 FLEKIEEEGF-----DP-DLVTYNTLISSYCKKGRLNDAFYLYRIMYRR----NVL-PDLVTYTTLMNGLCKEGKVREAH 330 (609)
Q Consensus 262 ~~~~~~~~~~-----~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-p~~~~~~~ll~~~~~~~~~~~a~ 330 (609)
.+++..+... .+ ...+++.+...|...|++++|++.|++..+. +.. ....++..+...+...|++++|.
T Consensus 163 ~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~ 242 (378)
T 3q15_A 163 HILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAV 242 (378)
T ss_dssp HHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 6665543200 00 1234555555666666666666666555431 100 01234444555555555555555
Q ss_pred HHHHHHHH-----CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 037911 331 QLFHRMVH-----RGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMM 372 (609)
Q Consensus 331 ~~~~~m~~-----~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 372 (609)
..+++..+ .. +....++..+...+.+.|++++|...+++..
T Consensus 243 ~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 288 (378)
T 3q15_A 243 EHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGL 288 (378)
T ss_dssp HHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55555544 21 1113444445555555555555555555544
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.33 E-value=7.6e-10 Score=108.53 Aligned_cols=274 Identities=12% Similarity=0.050 Sum_probs=168.6
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCc--HHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCC-CCC
Q 037911 128 NYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHS--VDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGF-QPS 204 (609)
Q Consensus 128 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-~~~ 204 (609)
.+......+...|++++|...+++.+...+...+. ...+..+.. .|...|++++|...+++..+... ..+
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~-------~~~~~g~~~~A~~~~~~al~~~~~~~~ 88 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGE-------VLHCKGELTRSLALMQQTEQMARQHDV 88 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHH-------HHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHH-------HHHhcCcHHHHHHHHHHHHHHHHhcCc
Confidence 34555667788999999999999998763211110 113444444 78889999999999998875211 111
Q ss_pred ----HHHHHHHHHHHHhcCChHHHHHHHHHHhhC----CCC--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 037911 205 ----IVSCNFLLNGLLKLNCIDQCWQVYEEMGRI----GIC--P-NTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDP 273 (609)
Q Consensus 205 ----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 273 (609)
..++..+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++........
T Consensus 89 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 168 (373)
T 1hz4_A 89 WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY 168 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc
Confidence 223566777788889999998888877542 211 2 23455667777888888888888888876542211
Q ss_pred ----CHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCH-hhHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 037911 274 ----DLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDL-VTYT-----TLMNGLCKEGKVREAHQLFHRMVHRGLSP 343 (609)
Q Consensus 274 ----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~-----~ll~~~~~~~~~~~a~~~~~~m~~~g~~p 343 (609)
...++..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++.......+
T Consensus 169 ~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~ 248 (373)
T 1hz4_A 169 QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFAN 248 (373)
T ss_dssp CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTT
T ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCc
Confidence 2345666777778888888888888777643111111 1111 22233567788888888777766532111
Q ss_pred ---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCccCH-HHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 037911 344 ---DIVSYNTLIFAYCKEGKMQESKSLLYEMMGN----GIYPDT-FTCQIIVQGYGKEGRLLSALNLVVELQR 408 (609)
Q Consensus 344 ---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 408 (609)
....+..+...+...|++++|...+++.... |..++. ..+..+...+...|+.++|...+++...
T Consensus 249 ~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 249 NHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp CGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 1223455666677777777777777766432 211122 2444455556666666666666665543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=8.2e-11 Score=123.78 Aligned_cols=166 Identities=11% Similarity=0.102 Sum_probs=144.3
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCC
Q 037911 125 TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPS 204 (609)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 204 (609)
++.+|+.+..++.+.|++++|++.|+++++. .|.....+..+.. .|.+.|++++|++.|+++++.. +.+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l---~P~~~~a~~nLg~-------~l~~~g~~~eA~~~~~~Al~l~-P~~ 76 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV---FPEFAAAHSNLAS-------VLQQQGKLQEALMHYKEAIRIS-PTF 76 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 5788999999999999999999999999987 4667888888888 8999999999999999999865 556
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 037911 205 IVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISS 284 (609)
Q Consensus 205 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 284 (609)
..+|+.+..++.+.|++++|++.|++..+.. +-+...|..+..+|.+.|++++|++.|++..+.. +-+...+..+..+
T Consensus 77 ~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~ 154 (723)
T 4gyw_A 77 ADAYSNMGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHC 154 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhH
Confidence 8899999999999999999999999988753 3457889999999999999999999999998874 2357789999999
Q ss_pred HHhcCCHhHHHHHHHHHhh
Q 037911 285 YCKKGRLNDAFYLYRIMYR 303 (609)
Q Consensus 285 ~~~~g~~~~a~~~~~~~~~ 303 (609)
+...|++++|.+.+++..+
T Consensus 155 l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 155 LQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHTTCCTTHHHHHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHH
Confidence 9999999999988888764
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-10 Score=122.42 Aligned_cols=170 Identities=17% Similarity=0.169 Sum_probs=150.0
Q ss_pred CCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC
Q 037911 158 DCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGIC 237 (609)
Q Consensus 158 ~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~ 237 (609)
..|.+.+.+..+.. .|.+.|++++|++.|+++++.. +-+..+|+.+..+|.+.|++++|++.|++..+.. +
T Consensus 4 s~P~~a~al~nLG~-------~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P 74 (723)
T 4gyw_A 4 SCPTHADSLNNLAN-------IKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-P 74 (723)
T ss_dssp --CHHHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred CCCCcHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 35778888999988 9999999999999999999865 5578899999999999999999999999998853 3
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHH
Q 037911 238 PNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLM 317 (609)
Q Consensus 238 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll 317 (609)
-+...|..+..++.+.|++++|++.|++..+.. +-+...|+.+..+|.+.|++++|++.|++..+.... +...|..+.
T Consensus 75 ~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~ 152 (723)
T 4gyw_A 75 TFADAYSNMGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLA 152 (723)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhh
Confidence 457899999999999999999999999999874 336789999999999999999999999999987554 678899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 037911 318 NGLCKEGKVREAHQLFHRMVH 338 (609)
Q Consensus 318 ~~~~~~~~~~~a~~~~~~m~~ 338 (609)
..+...|++++|.+.+++..+
T Consensus 153 ~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 153 HCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHTTCCTTHHHHHHHHHH
T ss_pred hHHHhcccHHHHHHHHHHHHH
Confidence 999999999999998888765
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.29 E-value=3.3e-10 Score=98.46 Aligned_cols=155 Identities=14% Similarity=0.102 Sum_probs=82.7
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDK 258 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (609)
.+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 17 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~ 94 (186)
T 3as5_A 17 SHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQKYDL 94 (186)
T ss_dssp HHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHH
Confidence 5566666666666666665533 3345555566666666666666666666655432 2344555555555555556666
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037911 259 VNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMV 337 (609)
Q Consensus 259 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 337 (609)
|.+.++++.+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+...+...|++++|...++++.
T Consensus 95 A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 171 (186)
T 3as5_A 95 AVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEALPHFKKAN 171 (186)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555555442 223444555555555555555555555555443221 33444445555555555555555555444
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.28 E-value=2.9e-10 Score=98.82 Aligned_cols=166 Identities=16% Similarity=0.086 Sum_probs=124.1
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCH
Q 037911 126 SSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSI 205 (609)
Q Consensus 126 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 205 (609)
...|..++..+...|++++|...++++.+. .|.+...+..+.. .|...|++++|...++++.+.. +.+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~-------~~~~~~~~~~A~~~~~~~~~~~-~~~~ 76 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDA---DAFDVDVALHLGI-------AYVKTGAVDRGTELLERSLADA-PDNV 76 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCT---TSCCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CccChHHHHHHHH-------HHHHcCCHHHHHHHHHHHHhcC-CCCH
Confidence 445666777777888888888888777643 3455666666666 7778888888888888877754 4567
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 037911 206 VSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSY 285 (609)
Q Consensus 206 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 285 (609)
..+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 77 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 154 (186)
T 3as5_A 77 KVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSY 154 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHH
Confidence 777777788888888888888888876642 4466777778888888888888888888877764 33567788888888
Q ss_pred HhcCCHhHHHHHHHHHhhC
Q 037911 286 CKKGRLNDAFYLYRIMYRR 304 (609)
Q Consensus 286 ~~~g~~~~a~~~~~~~~~~ 304 (609)
...|++++|.+.+++..+.
T Consensus 155 ~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 155 EQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHc
Confidence 8888888888888887654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.27 E-value=4.8e-11 Score=111.87 Aligned_cols=230 Identities=16% Similarity=0.115 Sum_probs=163.0
Q ss_pred cCCChhHHHHHHHHhhhc------CCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhh-----CCCCCcHHhHHHHh
Q 037911 102 CQSDSVSALTFFNWVKND------LEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELV-----KDCPHSVDVFQDLI 170 (609)
Q Consensus 102 ~~~~~~~A~~~f~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~l~ 170 (609)
..++++.|+.+|+.+... ...+....++..++.++...|++++|...++++++.. +..+.....+..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 346777777777777652 1223367889999999999999999999999998763 23345566777777
Q ss_pred hccccchhHHHHhCCHHHHHHHHHHHHhC------C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC------CCC
Q 037911 171 SCTEDCNWAYVKVGLIRESFKTFRKTLDV------G-FQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRI------GIC 237 (609)
Q Consensus 171 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------~~~ 237 (609)
. .|...|++++|++.|+++.+. . .+....++..+...+...|++++|...+++..+. +..
T Consensus 93 ~-------~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 165 (283)
T 3edt_B 93 V-------LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD 165 (283)
T ss_dssp H-------HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred H-------HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 7 899999999999999999864 1 1334667888999999999999999999998764 112
Q ss_pred C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-------CCCCC-HHhHHHHHHHHHhcCCH------hHHHHHHHHHh
Q 037911 238 P-NTHTFNILTHVFCKNGDVDKVNGFLEKIEEE-------GFDPD-LVTYNTLISSYCKKGRL------NDAFYLYRIMY 302 (609)
Q Consensus 238 ~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~-~~~~~~li~~~~~~g~~------~~a~~~~~~~~ 302 (609)
| ...++..+...+...|++++|...+++..+. ...+. ...+..+...+...+.. ..+...++...
T Consensus 166 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (283)
T 3edt_B 166 PNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACK 245 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC
Confidence 2 3567888999999999999999999998764 11222 22344443444433332 22222222222
Q ss_pred hCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037911 303 RRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHR 339 (609)
Q Consensus 303 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 339 (609)
.. ......++..+...+...|++++|..+|++..+.
T Consensus 246 ~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 246 VD-SPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CC-CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11 1224567888999999999999999999988753
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.2e-09 Score=98.84 Aligned_cols=195 Identities=8% Similarity=-0.013 Sum_probs=136.3
Q ss_pred CCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCC
Q 037911 124 PTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQP 203 (609)
Q Consensus 124 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 203 (609)
.++..+...+..+...|++++|...|+++++..+ +.+...+..+.. .|...|++++|++.|++..+.. +.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~~~~-------~~~~~~~~~~A~~~~~~al~~~-p~ 74 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTN--NQDSVTAYNCGV-------CADNIKKYKEAADYFDIAIKKN-YN 74 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHTT-CS
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccC--CCCcHHHHHHHH-------HHHHhhcHHHHHHHHHHHHHhC-cc
Confidence 4567888888888888888888888888887621 144555555666 7888888888888888888765 34
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH-------HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--
Q 037911 204 SIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNT-------HTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPD-- 274 (609)
Q Consensus 204 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-- 274 (609)
+...|..+..++...|++++|...|++..+.. +.+. ..|..+...+...|++++|++.|++..+. .|+
T Consensus 75 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~ 151 (228)
T 4i17_A 75 LANAYIGKSAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKW 151 (228)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcc
Confidence 56678888888888888888888888887642 2334 45677777788888888888888888876 344
Q ss_pred -HHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037911 275 -LVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHR 339 (609)
Q Consensus 275 -~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 339 (609)
...+..+..+|...| ...++++...+.. +...|.... ....+.+++|...+++..+.
T Consensus 152 ~~~~~~~l~~~~~~~~-----~~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 152 KTDALYSLGVLFYNNG-----ADVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHHHHHHHHHH-----HHHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH-----HHHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 456667777775544 3344555444322 333343333 23446678888888888875
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.4e-09 Score=98.33 Aligned_cols=210 Identities=10% Similarity=-0.045 Sum_probs=162.3
Q ss_pred cCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 037911 378 PDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELM 457 (609)
Q Consensus 378 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 457 (609)
.|+..+......+...|++++|+..|++..+....++...+..+..++...|++++|...+++..... +.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 35678888899999999999999999999988754678888889999999999999999999997765 34677888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 037911 458 ESLCKCDSVADALLLKDEMVDRNIKPSL-------STYRALICCFCGIGRSGEAVSLMDEMLESGMLPD---SQICRVLI 527 (609)
Q Consensus 458 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~ 527 (609)
..+...|++++|+..+++..+... .+. ..|..+...+...|++++|+..|+++++. .|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 999999999999999999987542 234 45777888889999999999999999864 555 45677777
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHh
Q 037911 528 NGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMIHSLW 601 (609)
Q Consensus 528 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 601 (609)
.+|...| ..+++.+...+ ..+...|.... ....|.+++|+..+++.++. .|+......++..+.
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCHHHHHHHHHHH
Confidence 7776544 44455555443 23344444333 34457789999999999966 787776666665543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.19 E-value=2.4e-10 Score=107.00 Aligned_cols=206 Identities=18% Similarity=0.107 Sum_probs=124.6
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC------CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc------
Q 037911 203 PSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRI------GI-CPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEE------ 269 (609)
Q Consensus 203 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------ 269 (609)
....++..+...+...|++++|...+++..+. +- +....++..+...+...|++++|.+.+++..+.
T Consensus 41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 120 (283)
T 3edt_B 41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 120 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcC
Confidence 34556777777777778888887777776543 11 223456777777778888888888877776654
Q ss_pred CC-CCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhC------CccC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--
Q 037911 270 GF-DPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRR------NVLP-DLVTYTTLMNGLCKEGKVREAHQLFHRMVHR-- 339 (609)
Q Consensus 270 ~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-- 339 (609)
.. +....++..+...|...|++++|+..+++..+. +-.| ...++..+...+...|++++|..+++++.+.
T Consensus 121 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 200 (283)
T 3edt_B 121 KFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAH 200 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 11 123456777777888888888888888777654 1112 3456777778888888888888888877653
Q ss_pred -----CCCCCH-HHHHHHHHHHHHcCChH------HHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 037911 340 -----GLSPDI-VSYNTLIFAYCKEGKMQ------ESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQ 407 (609)
Q Consensus 340 -----g~~p~~-~~~~~li~~~~~~g~~~------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 407 (609)
...+.. ..+..+...+...+... .+...++.... ..+....++..+...|...|++++|..++++..
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 279 (283)
T 3edt_B 201 EKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCAS 279 (283)
T ss_dssp HHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 112222 22333333332222222 22222221111 112234567778888888888888888888776
Q ss_pred HC
Q 037911 408 RF 409 (609)
Q Consensus 408 ~~ 409 (609)
+.
T Consensus 280 ~~ 281 (283)
T 3edt_B 280 RN 281 (283)
T ss_dssp TT
T ss_pred Hh
Confidence 53
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=2.5e-09 Score=100.63 Aligned_cols=140 Identities=10% Similarity=0.034 Sum_probs=77.8
Q ss_pred hhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCC--C-CcHHhHHHHhhccccchhHHHH
Q 037911 106 SVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDC--P-HSVDVFQDLISCTEDCNWAYVK 182 (609)
Q Consensus 106 ~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~~ 182 (609)
++.|...|+.+ +.++...|++++|...|+++++..... + .....+..+.. .|.+
T Consensus 33 ~~~A~~~~~~a----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~-------~~~~ 89 (292)
T 1qqe_A 33 FEEAADLCVQA----------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYK-------CFKS 89 (292)
T ss_dssp HHHHHHHHHHH----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HHHH
T ss_pred HHHHHHHHHHH----------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-------HHHH
Confidence 66677666665 446777888888888888887653211 1 12456666666 7888
Q ss_pred hCCHHHHHHHHHHHHhCCC---CC--CHHHHHHHHHHHHhc-CChHHHHHHHHHHhhCCCC-CC----HHHHHHHHHHHH
Q 037911 183 VGLIRESFKTFRKTLDVGF---QP--SIVSCNFLLNGLLKL-NCIDQCWQVYEEMGRIGIC-PN----THTFNILTHVFC 251 (609)
Q Consensus 183 ~g~~~~A~~~~~~~~~~~~---~~--~~~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~~~~-~~----~~~~~~l~~~~~ 251 (609)
.|++++|+..|++.++... .+ -..+++.+..+|... |++++|+..|++..+.... .+ ..++..+...+.
T Consensus 90 ~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~ 169 (292)
T 1qqe_A 90 GGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKA 169 (292)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 8888888888887765210 00 023444555555553 5555555555554431000 00 123444444444
Q ss_pred HcCChHHHHHHHHHHHH
Q 037911 252 KNGDVDKVNGFLEKIEE 268 (609)
Q Consensus 252 ~~g~~~~a~~~~~~~~~ 268 (609)
+.|++++|+..|++..+
T Consensus 170 ~~g~~~~A~~~~~~al~ 186 (292)
T 1qqe_A 170 LDGQYIEASDIYSKLIK 186 (292)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHH
Confidence 44555555554444444
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=7.6e-10 Score=104.23 Aligned_cols=245 Identities=13% Similarity=0.030 Sum_probs=141.6
Q ss_pred HHHHHHHHHhhCCccCCHhhHHHHHHHHHhc--C-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 037911 293 DAFYLYRIMYRRNVLPDLVTYTTLMNGLCKE--G-KVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLY 369 (609)
Q Consensus 293 ~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~--~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 369 (609)
+|.+++++..+. .++....| .++ +. + ++++|...|++. ...|...|++++|...|+
T Consensus 3 ~a~~~~~~a~k~-~~~~~~~~-~~~----~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~ 61 (292)
T 1qqe_A 3 DPVELLKRAEKK-GVPSSGFM-KLF----SGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFL 61 (292)
T ss_dssp CHHHHHHHHHHH-SSCCCTHH-HHH----SCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHH
T ss_pred cHHHHHHHHHHH-hCcCCCcc-hhc----CCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHH
Confidence 466666666654 22122223 222 32 2 477777777765 335667788888888887
Q ss_pred HHHHC----CCccC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037911 370 EMMGN----GIYPD-TFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQD 444 (609)
Q Consensus 370 ~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 444 (609)
+..+. |..++ ..+|+.+...|.+.|++++|+..+++..+. +...|++..+
T Consensus 62 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---------------~~~~g~~~~~---------- 116 (292)
T 1qqe_A 62 KAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI---------------FTHRGQFRRG---------- 116 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------HHHTTCHHHH----------
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---------------HHHcCCHHHH----------
Confidence 76542 21111 356777777777778888887777766542 1122221111
Q ss_pred CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCC
Q 037911 445 GYVPSLEIYNELMESLCKC-DSVADALLLKDEMVDRNIK-PS----LSTYRALICCFCGIGRSGEAVSLMDEMLESGMLP 518 (609)
Q Consensus 445 ~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p 518 (609)
..+++.+...|... |++++|+..|++..+.... .+ ..++..+...+...|++++|+..|+++.+.....
T Consensus 117 -----a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 191 (292)
T 1qqe_A 117 -----ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN 191 (292)
T ss_dssp -----HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred -----HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC
Confidence 23455666667764 7777777777776643110 01 2356667777777788888888877777643221
Q ss_pred CH------HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCh------hcHHHHHHHHH--hcCCHHHHHHHHHHHHHc
Q 037911 519 DS------QICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDT------ESYNAVFNMFA--EDGDLSKLMELQKRFLRL 584 (609)
Q Consensus 519 ~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~--~~g~~~~A~~~~~~m~~~ 584 (609)
.. ..+..+..++...|++++|...+++..+. .|+. ..+..++.++. ..+++++|++.|+++.
T Consensus 192 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~-- 267 (292)
T 1qqe_A 192 RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM-- 267 (292)
T ss_dssp TTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS--
T ss_pred CcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC--
Confidence 11 14566677777778888888887777653 2221 12333445554 3466777777777665
Q ss_pred CCCCChhh
Q 037911 585 GFAPNNLT 592 (609)
Q Consensus 585 g~~p~~~~ 592 (609)
.+.|+...
T Consensus 268 ~l~~~~~~ 275 (292)
T 1qqe_A 268 RLDKWKIT 275 (292)
T ss_dssp CCCHHHHH
T ss_pred ccHHHHHH
Confidence 33554433
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.8e-09 Score=98.59 Aligned_cols=102 Identities=7% Similarity=-0.056 Sum_probs=56.3
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCC--C
Q 037911 125 TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGF--Q 202 (609)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~ 202 (609)
++..+..++..+.+.|++++|+..|+++++..+..+.....+..+.. .|.+.|++++|+..|+++++... +
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~-------~~~~~~~~~~A~~~~~~~l~~~p~~~ 86 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLAR-------AYYQNKEYLLAASEYERFIQIYQIDP 86 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHH-------HHHHhCcHHHHHHHHHHHHHHCCCCc
Confidence 45555566666666666666666666666542222222445555555 56666666666666666665321 1
Q ss_pred CCHHHHHHHHHHHHh--------cCChHHHHHHHHHHhh
Q 037911 203 PSIVSCNFLLNGLLK--------LNCIDQCWQVYEEMGR 233 (609)
Q Consensus 203 ~~~~~~~~ll~~~~~--------~~~~~~a~~~~~~m~~ 233 (609)
....++..+..++.. .|++++|...|+++.+
T Consensus 87 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 125 (261)
T 3qky_A 87 RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFID 125 (261)
T ss_dssp THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHH
Confidence 113344555555555 6666666666666654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.07 E-value=1e-08 Score=91.01 Aligned_cols=165 Identities=11% Similarity=0.015 Sum_probs=98.7
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHH----------------HhhccccchhHHHHhCCHHHH
Q 037911 126 SSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQD----------------LISCTEDCNWAYVKVGLIRES 189 (609)
Q Consensus 126 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~~~g~~~~A 189 (609)
...+...+..+...|++++|+..|+++++. .|.+...+.. +.. .|.+.|++++|
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~lg~-------~~~~~g~~~~A 73 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL---NIDRTEMYYWTNVDKNSEISSKLATELAL-------AYKKNRNYDKA 73 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CHHHHHHHHHHHSCTTSHHHHHHHHHHHH-------HHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCChHHHHHhhhcchhhhhHHHHHHHHH-------HHHHCCCHHHH
Confidence 445555667777888888888888888876 3344444444 444 67777777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHH
Q 037911 190 FKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGD--VDKVNGFLEKIE 267 (609)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~ 267 (609)
+..|++.++.. +.+...+..+..++...|++++|...|++..+.. +.+...+..+...|...|+ .+.+...++...
T Consensus 74 ~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~ 151 (208)
T 3urz_A 74 YLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS 151 (208)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 77777777654 4456667777777777777777777777776642 3345566666666554443 333444444433
Q ss_pred HcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhC
Q 037911 268 EEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRR 304 (609)
Q Consensus 268 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 304 (609)
. ..|....+.....++...|++++|+..|++..+.
T Consensus 152 ~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 152 S--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred C--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 1 1222223333444555566666666666666654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.07 E-value=6.6e-08 Score=89.01 Aligned_cols=242 Identities=10% Similarity=-0.007 Sum_probs=149.7
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDK 258 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (609)
...-.|.+..++.-..++.. ......--.+.+++...|++... ..-.|....+..+...+ ..+
T Consensus 22 n~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~---- 84 (310)
T 3mv2_B 22 QNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK---- 84 (310)
T ss_dssp HHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----
T ss_pred HHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----
Confidence 45567888888874433221 22233444456778777776631 11234433444444333 222
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCc-cCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037911 259 VNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNV-LPDLVTYTTLMNGLCKEGKVREAHQLFHRMV 337 (609)
Q Consensus 259 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 337 (609)
|+..+++..+.+ .++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 677777776654 44556666777888888888888888888766553 1256677778888888888888888888887
Q ss_pred HCCCCC-----CHHHHHHHHHHHH--HcC--ChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 037911 338 HRGLSP-----DIVSYNTLIFAYC--KEG--KMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQR 408 (609)
Q Consensus 338 ~~g~~p-----~~~~~~~li~~~~--~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 408 (609)
+. .| +..+...|..++. ..| +..+|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 75 55 2455555555533 233 788888888888765 45533444445577788888888888876554
Q ss_pred CC---------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037911 409 FG---------VSISRDIYDYLIVALCQDNRPFAATSLLERIGQD 444 (609)
Q Consensus 409 ~~---------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 444 (609)
.. -+-++.++..++......|+ ++.+++.++...
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 31 02245555455544445554 566666666554
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.06 E-value=1.7e-08 Score=90.91 Aligned_cols=188 Identities=13% Similarity=0.046 Sum_probs=100.8
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCC-CC
Q 037911 126 SSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQ-PS 204 (609)
Q Consensus 126 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~ 204 (609)
+..+..++..+...|++++|+..|+++++..+..+.....+..+.. +|.+.|++++|+..|+++++.... +.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~-------~~~~~~~~~~A~~~~~~~l~~~P~~~~ 76 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIY-------AYYKNADLPLAQAAIDRFIRLNPTHPN 76 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-------HHHhcCCHHHHHHHHHHHHHHCcCCCc
Confidence 3445555555666666666666666666553333333344444554 566666666666666666553211 11
Q ss_pred H-HHHHHHHHHHH------------------hcCChHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHH
Q 037911 205 I-VSCNFLLNGLL------------------KLNCIDQCWQVYEEMGRIGICPN-THTFNILTHVFCKNGDVDKVNGFLE 264 (609)
Q Consensus 205 ~-~~~~~ll~~~~------------------~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~ 264 (609)
. .++..+..++. ..|++++|...|+++.+.. |+ ...+...... ..+..
T Consensus 77 ~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----------~~~~~ 144 (225)
T 2yhc_A 77 IDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----------VFLKD 144 (225)
T ss_dssp HHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH----------HHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH----------HHHHH
Confidence 1 12333333332 3566777777777776642 33 2222211110 00000
Q ss_pred HHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037911 265 KIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPD--LVTYTTLMNGLCKEGKVREAHQLFHRMVHRG 340 (609)
Q Consensus 265 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g 340 (609)
.+ ......+...|.+.|++++|+..|+++.+..+... ...+..+..++.+.|+.++|.+.++.+...+
T Consensus 145 ~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 145 RL--------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HH--------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HH--------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 00 01112455677778888888888888876532211 2456677788888888888888888777663
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.04 E-value=1.3e-08 Score=82.90 Aligned_cols=130 Identities=17% Similarity=0.175 Sum_probs=98.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 037911 452 IYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYC 531 (609)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 531 (609)
.+..+...+...|++++|..+++++.+.+. .+...+..+...+...|++++|..+++++.+.. +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 456677777778888888888888776532 356677777777888888888888888887643 445667777888888
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037911 532 MEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRL 584 (609)
Q Consensus 532 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 584 (609)
..|++++|.+.++.+.+.. +.+...+..++..+...|++++|.+.++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 8888888888888887663 334567778888888888888888888888754
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.04 E-value=7.5e-09 Score=95.69 Aligned_cols=185 Identities=11% Similarity=0.033 Sum_probs=120.3
Q ss_pred HHHHHHHhcCCChhHHHHHHHHhhhcCCCCC-CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhc
Q 037911 94 EISRVLLRCQSDSVSALTFFNWVKNDLEIKP-TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISC 172 (609)
Q Consensus 94 ~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 172 (609)
.-.+......|+++.|+..|+.+.......+ ...++..++.++.+.|++++|...|+.+++..+..+.....+..+..
T Consensus 19 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~- 97 (261)
T 3qky_A 19 FERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAM- 97 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH-
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHH-
Confidence 3444555667999999999999997532222 27889999999999999999999999999986555566677777777
Q ss_pred cccchhHHHH--------hCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHH
Q 037911 173 TEDCNWAYVK--------VGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFN 244 (609)
Q Consensus 173 ~~~~~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 244 (609)
+|.. .|++++|+..|+++++.. +.+......+... ..+.. --...+.
T Consensus 98 ------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~--------------~~~~~----~~~~~~~ 152 (261)
T 3qky_A 98 ------CYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKI--------------RELRA----KLARKQY 152 (261)
T ss_dssp ------HHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHH--------------HHHHH----HHHHHHH
T ss_pred ------HHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHH--------------HHHHH----HHHHHHH
Confidence 7888 999999999999999854 2222232221110 00000 0011134
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCC--CHHhHHHHHHHHHhc----------CCHhHHHHHHHHHhhC
Q 037911 245 ILTHVFCKNGDVDKVNGFLEKIEEEGFDP--DLVTYNTLISSYCKK----------GRLNDAFYLYRIMYRR 304 (609)
Q Consensus 245 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~~~ 304 (609)
.+...|.+.|++++|+..|+++.+..... ....+..+..+|... |++++|+..|+++.+.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 45556666666666666666666542111 123455555555544 6666677777666654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.03 E-value=9.7e-08 Score=87.91 Aligned_cols=78 Identities=12% Similarity=0.085 Sum_probs=35.7
Q ss_pred HHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 037911 364 SKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGV-SISRDIYDYLIVALCQDNRPFAATSLLERIG 442 (609)
Q Consensus 364 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 442 (609)
|...|++..+.+ .++..++..+..++...|++++|++++.+....+. .-+...+...+..+.+.|+++.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444444444332 22333334444555555555555555555444332 1233444444445555555555555555543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.02 E-value=1.9e-08 Score=81.84 Aligned_cols=129 Identities=20% Similarity=0.274 Sum_probs=69.9
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHH
Q 037911 128 NYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVS 207 (609)
Q Consensus 128 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 207 (609)
+|..++..+...|++++|..+++++.+. .|.+...+..+.. .+...|++++|+..++++.+.+ +.+...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~-------~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 71 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL---DPRSAEAWYNLGN-------AYYKQGDYDEAIEYYQKALELD-PRSAEA 71 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH-------HHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc---CCcchhHHHHHHH-------HHHHhcCHHHHHHHHHHHHHHC-CCchHH
Confidence 4555566666666666666666666554 2334444444544 5556666666666666665543 334445
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037911 208 CNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEE 268 (609)
Q Consensus 208 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 268 (609)
+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+
T Consensus 72 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 72 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 5555555555555555555555554432 22344444555555555555555555555443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.01 E-value=4.5e-07 Score=91.43 Aligned_cols=377 Identities=8% Similarity=-0.081 Sum_probs=212.1
Q ss_pred CCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHhhC-CCC
Q 037911 160 PHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNC-IDQCWQVYEEMGRI-GIC 237 (609)
Q Consensus 160 ~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~-~~~ 237 (609)
.....+|...+. ..-.|+++.+..+|++.+.. .|++..|...+....+.+. .+....+|+..... |..
T Consensus 12 ~~aR~vyer~l~--------~~P~~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d 81 (493)
T 2uy1_A 12 SSPSAIMEHARR--------LYMSKDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENY 81 (493)
T ss_dssp CCHHHHHHHHHH--------HHHTTCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHH--------HCCCCCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCC
Confidence 344566666664 33448888888888888873 4688888888877766653 35566777766542 422
Q ss_pred -CCHHHHHHHHHHHH----HcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhh
Q 037911 238 -PNTHTFNILTHVFC----KNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVT 312 (609)
Q Consensus 238 -~~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 312 (609)
.+...|...+..+. ..|+.+.+..+|+.........-...|...... .+......+.+++.+..
T Consensus 82 ~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~~---------- 150 (493)
T 2uy1_A 82 WDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVGDTL---------- 150 (493)
T ss_dssp TTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHHHHH----------
T ss_pred cccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHHHHh----------
Confidence 35566666665433 235677788888887763211011122222111 11111222222222111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--CC-----hHHHHHHHHHHHHCCCccCHHHHHH
Q 037911 313 YTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKE--GK-----MQESKSLLYEMMGNGIYPDTFTCQI 385 (609)
Q Consensus 313 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~--g~-----~~~A~~~~~~~~~~~~~~~~~~~~~ 385 (609)
+.+..|..+++++...--..+...|...+.--... |- .+.+..+|++++.. .+.+...|..
T Consensus 151 -----------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ 218 (493)
T 2uy1_A 151 -----------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFF 218 (493)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHH
T ss_pred -----------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHH
Confidence 12233333333333210001233444433332211 10 23456777777764 2345677777
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH-HHHHHHhC-----C---CCCCHHHHHHH
Q 037911 386 IVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATS-LLERIGQD-----G---YVPSLEIYNEL 456 (609)
Q Consensus 386 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~-~~~~~~~~-----~---~~~~~~~~~~l 456 (609)
.+..+.+.|+.++|..++++.... +.+...+. .|....+.++... +.+..... + .......|...
T Consensus 219 ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y 292 (493)
T 2uy1_A 219 YSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINH 292 (493)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHH
Confidence 777778888888888888888877 22322222 1222111111111 11111000 0 01123456677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-CCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 037911 457 MESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCG-IGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKD 535 (609)
Q Consensus 457 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 535 (609)
+....+.+..+.|..+|+.. .. ...+...|......-.. .++.+.|..+|+...+.- +-+...+...++...+.|+
T Consensus 293 ~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~ 369 (493)
T 2uy1_A 293 LNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGD 369 (493)
T ss_dssp HHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCC
Confidence 77777788899999999999 32 22344444432222222 346999999999998742 3345566677887888999
Q ss_pred HHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037911 536 VNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLR 583 (609)
Q Consensus 536 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 583 (609)
.+.|..+|+.+. .....|..++..-...|+.+.+.++++++..
T Consensus 370 ~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 370 EENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999873 2457788888877888999999999988874
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.01 E-value=4.5e-09 Score=111.19 Aligned_cols=177 Identities=11% Similarity=-0.058 Sum_probs=141.0
Q ss_pred HhCCChhHHHHHHHHHHH-----hhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 037911 137 AWNNKFSFAMKMLCELVE-----LVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFL 211 (609)
Q Consensus 137 ~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 211 (609)
...|++++|++.++++++ .....|.+...+..+.. .|...|++++|++.|+++.+.+ +.+...|..+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~-------~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~l 473 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVR-------ALLDLGDVAKATRKLDDLAERV-GWRWRLVWYR 473 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHH-------HHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHH-------HHHhcCCHHHHHHHHHHHhccC-cchHHHHHHH
Confidence 778999999999999981 11134667777888877 8999999999999999999865 5678899999
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCH
Q 037911 212 LNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRL 291 (609)
Q Consensus 212 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 291 (609)
..++...|++++|.+.|++..+.. +.+...+..+..++.+.|++++ ++.|++..+.+ +.+...|..+..++.+.|++
T Consensus 474 g~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~ 550 (681)
T 2pzi_A 474 AVAELLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDR 550 (681)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCH
Confidence 999999999999999999998753 3457788889999999999999 99999988774 33677888899999999999
Q ss_pred hHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCC
Q 037911 292 NDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGK 325 (609)
Q Consensus 292 ~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 325 (609)
++|++.|++..+.+.. +...+..+..++...++
T Consensus 551 ~~A~~~~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 551 VGAVRTLDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHHHHHHHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 9999999988876433 35666667766655444
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=2.9e-09 Score=88.81 Aligned_cols=145 Identities=10% Similarity=0.098 Sum_probs=100.8
Q ss_pred HHHHhcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccc
Q 037911 97 RVLLRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDC 176 (609)
Q Consensus 97 ~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (609)
+.+.+.+++.+.|+..|..+... .+.++..+..++.+|.+.|++++|++.|+++++. .|.+..++..+..
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~----- 73 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGL----- 73 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH-----
T ss_pred HHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHH-----
Confidence 44556667888888888877642 2235667777888888888888888888888876 4566777777777
Q ss_pred hhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH-HHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 037911 177 NWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQV-YEEMGRIGICPNTHTFNILTHVFCKNGD 255 (609)
Q Consensus 177 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~-~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 255 (609)
.|.+.|++++|+..|+++++.. +-+..+|..+...+.+.|++++|.+. +++..+.. +-+...|......+...|+
T Consensus 74 --~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 74 --LYELEENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp --HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred --HHHHcCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 7888888888888888888764 44677777788888888887665554 46666532 3345566666655555553
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.98 E-value=7.9e-09 Score=109.33 Aligned_cols=175 Identities=14% Similarity=0.019 Sum_probs=145.1
Q ss_pred hcCCChhHHHHHHHHhhh-----c-CCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccc
Q 037911 101 RCQSDSVSALTFFNWVKN-----D-LEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTE 174 (609)
Q Consensus 101 ~~~~~~~~A~~~f~~~~~-----~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 174 (609)
...+++++|++.|+.+.. . ...+.+...|..++.++...|++++|+..|+++++. .|.+...+..+..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~--- 475 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER---VGWRWRLVWYRAV--- 475 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---HCCCHHHHHHHHH---
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc---CcchHHHHHHHHH---
Confidence 556899999999999981 0 123457789999999999999999999999999987 4567888888887
Q ss_pred cchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 037911 175 DCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNG 254 (609)
Q Consensus 175 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 254 (609)
.|...|++++|++.|+++++.. +.+...|..+..++.+.|++++ .+.|++..+.+ +.+...|..+..++.+.|
T Consensus 476 ----~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g 548 (681)
T 2pzi_A 476 ----AELLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEG 548 (681)
T ss_dssp ----HHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred ----HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcC
Confidence 8999999999999999999865 4577889999999999999999 99999998753 446788999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhcCC
Q 037911 255 DVDKVNGFLEKIEEEGFDPD-LVTYNTLISSYCKKGR 290 (609)
Q Consensus 255 ~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~ 290 (609)
++++|++.|++..+. .|+ ...+..+..++...++
T Consensus 549 ~~~~A~~~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 549 DRVGAVRTLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp CHHHHHHHHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred CHHHHHHHHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 999999999998876 344 5677777777766554
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.97 E-value=6.1e-07 Score=83.54 Aligned_cols=173 Identities=9% Similarity=-0.008 Sum_probs=81.2
Q ss_pred CCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCC--ChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHH
Q 037911 103 QSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNN--KFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAY 180 (609)
Q Consensus 103 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 180 (609)
....+.|+..++.++.. .+-...+|+.-..++...| ++++++++++.++.. .|.+..++..-.. .+
T Consensus 46 ~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~---nPk~y~aW~~R~~-------iL 113 (306)
T 3dra_A 46 EEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD---NEKNYQIWNYRQL-------II 113 (306)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH---CTTCCHHHHHHHH-------HH
T ss_pred CCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH---CcccHHHHHHHHH-------HH
Confidence 33445666666666642 1224455555556666555 666666666666654 2333333333222 22
Q ss_pred ----HHh---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH--HHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 037911 181 ----VKV---GLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCID--QCWQVYEEMGRIGICPNTHTFNILTHVFC 251 (609)
Q Consensus 181 ----~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 251 (609)
... +++++++++++++.+.. +.+..+|+.-..++.+.|.++ ++++.++++.+.. +-|...|+.....+.
T Consensus 114 ~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~ 191 (306)
T 3dra_A 114 GQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLF 191 (306)
T ss_dssp HHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 223 45555555555555543 445555555555555555544 5555555554432 234444444443333
Q ss_pred HcCC------hHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 037911 252 KNGD------VDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGR 290 (609)
Q Consensus 252 ~~g~------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 290 (609)
+.|+ ++++++.+++++... +-|...|+.+...+.+.|+
T Consensus 192 ~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 192 SKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDR 235 (306)
T ss_dssp SSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTC
T ss_pred hccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCC
Confidence 3333 444444444444432 1234444444444444443
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.96 E-value=3.7e-08 Score=87.36 Aligned_cols=171 Identities=11% Similarity=0.108 Sum_probs=77.6
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDK 258 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (609)
.+...|++++|+..|+++++.. +.+...|... .... ...........+..++.+.|++++
T Consensus 13 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~-----~~~~--------------~~~~~~~~~~~lg~~~~~~g~~~~ 72 (208)
T 3urz_A 13 AAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWT-----NVDK--------------NSEISSKLATELALAYKKNRNYDK 72 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHH-----HSCT--------------TSHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHh-----hhcc--------------hhhhhHHHHHHHHHHHHHCCCHHH
Confidence 6789999999999999998854 2234444440 0000 000011112234444445555555
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCC--HHHHHHHHHHH
Q 037911 259 VNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGK--VREAHQLFHRM 336 (609)
Q Consensus 259 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~--~~~a~~~~~~m 336 (609)
|+..|++..+.. +-+...+..+..++...|++++|+..|++..+..+. +..+|..+...+...|+ .+.+...++..
T Consensus 73 A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~ 150 (208)
T 3urz_A 73 AYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKL 150 (208)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 555555544442 123444455555555555555555555555444322 34444444444433322 22233333332
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037911 337 VHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMG 373 (609)
Q Consensus 337 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 373 (609)
.. ..|....+..+..++...|++++|...|++.++
T Consensus 151 ~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 151 SS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp -C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred hC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 21 111112222233334444555555555555554
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.6e-07 Score=83.45 Aligned_cols=176 Identities=14% Similarity=0.043 Sum_probs=108.3
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHH
Q 037911 399 ALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCD----SVADALLLKD 474 (609)
Q Consensus 399 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~ 474 (609)
|+..|++..+.| +...+..+...+...+++++|...+++..+.+ +...+..+...|.. + ++++|.++|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 444444444432 44455555555555555566666555555443 44555556666655 4 6777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhc----CCCHhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHc----cCCHHHHHHHHHH
Q 037911 475 EMVDRNIKPSLSTYRALICCFCG----IGRSGEAVSLMDEMLESGML-PDSQICRVLINGYCM----EKDVNKAEALLGF 545 (609)
Q Consensus 475 ~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 545 (609)
+..+.| +..++..|...|.. .+++++|+++|++..+.+.. .+...+..|...|.. .+++++|...|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 776654 45666666666665 67777777777777754411 015666677777776 6677778777777
Q ss_pred HHHcCCCCChhcHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcCC
Q 037911 546 FAKKFQIYDTESYNAVFNMFAED-G-----DLSKLMELQKRFLRLGF 586 (609)
Q Consensus 546 ~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~g~ 586 (609)
..+. ..+...+..|...|... | ++++|+++|++..+.|.
T Consensus 155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 7765 23444566666666543 3 77788888887777664
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.1e-06 Score=81.80 Aligned_cols=233 Identities=9% Similarity=0.030 Sum_probs=175.3
Q ss_pred hCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH----HHc---
Q 037911 183 VGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLN--CIDQCWQVYEEMGRIGICPNTHTFNILTHVF----CKN--- 253 (609)
Q Consensus 183 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~----~~~--- 253 (609)
....++|++.+++++..+ +-+..+|+.--.++...| ++++++++++.+.... +-+..+|+.-...+ ...
T Consensus 46 ~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 46 EEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcccc
Confidence 334478999999999876 567778998888888888 9999999999998753 34455666554444 455
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHh--HHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCC------
Q 037911 254 GDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLN--DAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGK------ 325 (609)
Q Consensus 254 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~------ 325 (609)
+++++++++++++.+.. +.+..+|+.-.-.+.+.|.++ ++++.++++.+.++. |-..|+.-...+...+.
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhh
Confidence 78999999999999875 447788888888888888888 999999999988766 77888877777777776
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHH-HHHHHHHHHHCC--CccCHHHHHHHHHHHHccCCHHHHHHH
Q 037911 326 VREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQE-SKSLLYEMMGNG--IYPDTFTCQIIVQGYGKEGRLLSALNL 402 (609)
Q Consensus 326 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~ 402 (609)
++++++.++.+.... +-|...|+.+-..+.+.|+... +..+..++.+.+ -..+...+..+...|.+.|+.++|+++
T Consensus 202 ~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 202 IDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 888999998888764 3477888888888888887444 455666655432 134667888888888888999999999
Q ss_pred HHHHHHCCCCCCHHHHHH
Q 037911 403 VVELQRFGVSISRDIYDY 420 (609)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~ 420 (609)
++.+.+.--+.....|+.
T Consensus 281 ~~~l~~~~Dpir~~yW~~ 298 (306)
T 3dra_A 281 YDLLKSKYNPIRSNFWDY 298 (306)
T ss_dssp HHHHHHTTCGGGHHHHHH
T ss_pred HHHHHhccChHHHHHHHH
Confidence 998876322334444443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.4e-07 Score=83.78 Aligned_cols=177 Identities=7% Similarity=-0.003 Sum_probs=120.9
Q ss_pred HHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhC---
Q 037911 108 SALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVG--- 184 (609)
Q Consensus 108 ~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g--- 184 (609)
+|++.|+.+.. ..++.++..+...+...+++++|...|++..+. .+...+..+.. .|.. +
T Consensus 4 eA~~~~~~aa~----~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-----g~~~a~~~lg~-------~y~~-~g~~ 66 (212)
T 3rjv_A 4 EPGSQYQQQAE----AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ-----GDGDALALLAQ-------LKIR-NPQQ 66 (212)
T ss_dssp CTTHHHHHHHH----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----TCHHHHHHHHH-------HTTS-STTS
T ss_pred hHHHHHHHHHH----CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-----CCHHHHHHHHH-------HHHc-CCCC
Confidence 46677777775 256778888888888888888888888888765 24555555555 4555 5
Q ss_pred -CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHH----cC
Q 037911 185 -LIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLK----LNCIDQCWQVYEEMGRIGIC-PNTHTFNILTHVFCK----NG 254 (609)
Q Consensus 185 -~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~-~~~~~~~~l~~~~~~----~g 254 (609)
++++|++.|++..+.| +..++..|...|.. .+++++|.+.|++..+.|.. .+...+..|...|.. .+
T Consensus 67 ~~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~ 143 (212)
T 3rjv_A 67 ADYPQARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPE 143 (212)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSC
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCC
Confidence 7888888888887744 56677777777766 67788888888887775411 025666777777777 66
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc-C-----CHhHHHHHHHHHhhCCc
Q 037911 255 DVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKK-G-----RLNDAFYLYRIMYRRNV 306 (609)
Q Consensus 255 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-----~~~~a~~~~~~~~~~~~ 306 (609)
+.++|...|++..+. ..+...+..|...|... | +.++|+..|++..+.|.
T Consensus 144 d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 144 DDVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp CHHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 777777777777665 22444556666666543 2 67777777777766553
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.93 E-value=6.6e-06 Score=82.91 Aligned_cols=203 Identities=11% Similarity=0.032 Sum_probs=112.0
Q ss_pred CChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCC-hhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHH-
Q 037911 104 SDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNK-FSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYV- 181 (609)
Q Consensus 104 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~- 181 (609)
++++.+..+|+.+... .|+...|...+.-..+.+. .+....+|+.++...+..+.+..++...+. .+.
T Consensus 28 ~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~-------f~~~ 97 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIE-------EEGK 97 (493)
T ss_dssp TCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHH-------HTSS
T ss_pred CCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHH-------HHHh
Confidence 7899999999999863 5799999999888877763 456788888888875556677788887775 221
Q ss_pred ---HhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHH
Q 037911 182 ---KVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDK 258 (609)
Q Consensus 182 ---~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (609)
..|+.+.+.++|++++.... .+. +.-+.-|..+... .+..+...++.-. .+.+..
T Consensus 98 ~~~~~~~~~~vR~iy~rAL~~P~-~~~----------------~~lw~~Y~~fE~~---~~~~~~~~~~~~~--~~~y~~ 155 (493)
T 2uy1_A 98 IEDEQTRIEKIRNGYMRALQTPM-GSL----------------SELWKDFENFELE---LNKITGKKIVGDT--LPIFQS 155 (493)
T ss_dssp CSSHHHHHHHHHHHHHHHHTSCC-TTH----------------HHHHHHHHHHHHH---HCHHHHHHHHHHH--HHHHHH
T ss_pred chhhhHHHHHHHHHHHHHHhChh-hhH----------------HHHHHHHHHHHHH---hccccHHHHHHHH--hHHHHH
Confidence 35678889999999987321 111 1112222222111 1111111121111 122333
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC--C-----HhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHH
Q 037911 259 VNGFLEKIEEEGFDPDLVTYNTLISSYCKKG--R-----LNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQ 331 (609)
Q Consensus 259 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~-----~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 331 (609)
|..+++.+...--..+...|...+..-...+ - .+.+..+|+++....+. +...|...+.-+.+.|+.++|..
T Consensus 156 ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~-~~~lW~~ya~~~~~~~~~~~ar~ 234 (493)
T 2uy1_A 156 SFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYY-AEEVYFFYSEYLIGIGQKEKAKK 234 (493)
T ss_dssp HHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCCHHHHHH
Confidence 4444443332100012334444443322111 0 23455666666654322 45566666666667777777777
Q ss_pred HHHHHHHC
Q 037911 332 LFHRMVHR 339 (609)
Q Consensus 332 ~~~~m~~~ 339 (609)
++++....
T Consensus 235 i~erAi~~ 242 (493)
T 2uy1_A 235 VVERGIEM 242 (493)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 77777765
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.6e-08 Score=86.96 Aligned_cols=161 Identities=12% Similarity=-0.022 Sum_probs=76.5
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHH
Q 037911 128 NYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVS 207 (609)
Q Consensus 128 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 207 (609)
.+..++..+...|++++|...++++++. .|.+...+..+.. .|...|++++|+..|+++.+.. |+...
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~-------~~~~~g~~~~A~~~~~~a~~~~--p~~~~ 75 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDE---LQSRGDVKLAKAD-------CLLETKQFELAQELLATIPLEY--QDNSY 75 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHH---HHTSHHHHHHHHH-------HHHHTTCHHHHHHHHTTCCGGG--CCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHH-------HHHHCCCHHHHHHHHHHhhhcc--CChHH
Confidence 3445555566666666666666665544 2344555555555 5666666666666666655433 23332
Q ss_pred HHHHHHH-HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHhHHHHHHHH
Q 037911 208 CNFLLNG-LLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDP-DLVTYNTLISSY 285 (609)
Q Consensus 208 ~~~ll~~-~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~ 285 (609)
+..+... +...+....|...+++..+.. +.+...+..+...+...|++++|...|+++.+....+ +...+..+..++
T Consensus 76 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~ 154 (176)
T 2r5s_A 76 KSLIAKLELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDIL 154 (176)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHH
Confidence 2221111 111122223444455444421 2234444555555555555555555555554442111 123444455555
Q ss_pred HhcCCHhHHHHHHHHH
Q 037911 286 CKKGRLNDAFYLYRIM 301 (609)
Q Consensus 286 ~~~g~~~~a~~~~~~~ 301 (609)
...|+.++|...|++.
T Consensus 155 ~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 155 SALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHCSSCHHHHHHHHH
T ss_pred HHhCCCCcHHHHHHHH
Confidence 5555555555555443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.9e-08 Score=86.60 Aligned_cols=155 Identities=13% Similarity=0.076 Sum_probs=98.0
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHHcCChH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHV-FCKNGDVD 257 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~-~~~~g~~~ 257 (609)
.+.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|...+++.... .|+...+..+... +...++..
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~ 91 (176)
T 2r5s_A 15 ELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQQAAES 91 (176)
T ss_dssp HHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHhhcccc
Confidence 6778888888888888877643 456777888888888888888888888887653 2344333222211 11222333
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccC-CHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037911 258 KVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLP-DLVTYTTLMNGLCKEGKVREAHQLFHRM 336 (609)
Q Consensus 258 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m 336 (609)
.|...+++..+.. +.+...+..+..++...|++++|...|+++.+..+.+ +...+..+...+...|+.++|...|++.
T Consensus 92 ~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 92 PELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 4566666666552 2245666666677777777777777777766654432 2345666666666677777776666655
Q ss_pred H
Q 037911 337 V 337 (609)
Q Consensus 337 ~ 337 (609)
.
T Consensus 171 l 171 (176)
T 2r5s_A 171 L 171 (176)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=8.3e-08 Score=89.84 Aligned_cols=167 Identities=10% Similarity=-0.011 Sum_probs=108.5
Q ss_pred CCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCC
Q 037911 123 KPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQ 202 (609)
Q Consensus 123 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 202 (609)
+.+...+..++..+...|++++|...|+++++. .|.+...+..+.. .|.+.|++++|+..++++.+..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~-------~~~~~g~~~~A~~~l~~~~~~~-- 181 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL---SNQNGEIGLLLAE-------TLIALNRSEDAEAVLXTIPLQD-- 181 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTSCHHHHHHHHH-------HHHHTTCHHHHHHHHTTSCGGG--
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCcchhHHHHHHH-------HHHHCCCHHHHHHHHHhCchhh--
Confidence 345566677777777778888888888777765 4556666666766 7777788888888777776643
Q ss_pred CCHHHHHHHH-HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCHHhHHH
Q 037911 203 PSIVSCNFLL-NGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFD-PDLVTYNT 280 (609)
Q Consensus 203 ~~~~~~~~ll-~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~ 280 (609)
|+........ ..+...++.++|...+++..+.. +.+...+..+...+...|++++|...|.++.+.... .+...+..
T Consensus 182 p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~ 260 (287)
T 3qou_A 182 QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXT 260 (287)
T ss_dssp CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHH
T ss_pred cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHH
Confidence 4443332222 23555666677777777766542 345666677777777777777777777777765311 11456666
Q ss_pred HHHHHHhcCCHhHHHHHHHHHh
Q 037911 281 LISSYCKKGRLNDAFYLYRIMY 302 (609)
Q Consensus 281 li~~~~~~g~~~~a~~~~~~~~ 302 (609)
++..+...|+.++|...|++..
T Consensus 261 l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 261 FQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCcHHHHHHHHH
Confidence 7777777777777776666543
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.88 E-value=1.3e-07 Score=85.05 Aligned_cols=181 Identities=12% Similarity=0.044 Sum_probs=126.4
Q ss_pred HHHhcCCChhHHHHHHHHhhhcCCCCC-CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccc
Q 037911 98 VLLRCQSDSVSALTFFNWVKNDLEIKP-TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDC 176 (609)
Q Consensus 98 ~l~~~~~~~~~A~~~f~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (609)
......|+++.|+..|+.+.......+ ....+..++.++.+.|++++|+..|+++++..+..+.....+..+..
T Consensus 12 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~----- 86 (225)
T 2yhc_A 12 QQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGL----- 86 (225)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH-----
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHH-----
Confidence 344556899999999999997533333 35788999999999999999999999999885554433334444443
Q ss_pred hhHHHH------------------hCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC
Q 037911 177 NWAYVK------------------VGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICP 238 (609)
Q Consensus 177 ~~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~ 238 (609)
+|.. .|++++|+..|+++++.. +-+..++....... .+...+.
T Consensus 87 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~----------~~~~~~~------ 147 (225)
T 2yhc_A 87 --TNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV----------FLKDRLA------ 147 (225)
T ss_dssp --HHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH----------HHHHHHH------
T ss_pred --HHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH----------HHHHHHH------
Confidence 3433 678999999999999854 33333333221110 0111110
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----HHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCc
Q 037911 239 NTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPD----LVTYNTLISSYCKKGRLNDAFYLYRIMYRRNV 306 (609)
Q Consensus 239 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 306 (609)
.....+...+.+.|++++|+..|+++.+.. |+ ...+..+..++.+.|+.++|.+.++.+...++
T Consensus 148 --~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 148 --KYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred --HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 112345677888999999999999988763 33 24677888899999999999999998887654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=1e-08 Score=85.42 Aligned_cols=142 Identities=10% Similarity=-0.023 Sum_probs=67.6
Q ss_pred HHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 037911 135 ILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNG 214 (609)
Q Consensus 135 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 214 (609)
++...|++++|+..++..... .|.....+..+.. .|.+.|++++|++.|+++++.. +.+..+|..+..+
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~---~p~~~~~~~~la~-------~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 74 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPS---PRQKSIKGFYFAK-------LYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLL 74 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCS---HHHHHTTHHHHHH-------HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHHhccc---CcccHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 333445555555555554422 2222333334444 5555666666666666555543 3345555555555
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHH-HHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 037911 215 LLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNG-FLEKIEEEGFDPDLVTYNTLISSYCKKG 289 (609)
Q Consensus 215 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~~li~~~~~~g 289 (609)
+.+.|++++|...|++..+.. +-+...+..+...|.+.|++++|.+ .+++..+.. +-+..+|......+...|
T Consensus 75 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 75 YELEENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHcCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 555555555555555555432 2234455555555555555544333 234444432 123344444444444333
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.87 E-value=9.2e-08 Score=90.61 Aligned_cols=199 Identities=11% Similarity=0.032 Sum_probs=113.1
Q ss_pred CCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 037911 139 NNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKL 218 (609)
Q Consensus 139 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 218 (609)
.|++++|.+++++..+..+.. +. ...+++++|...|+++ ...|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~---------~~----------~~~~~~~~A~~~~~~a---------------~~~~~~~ 49 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTS---------FM----------KWKPDYDSAASEYAKA---------------AVAFKNA 49 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC---------SS----------SCSCCHHHHHHHHHHH---------------HHHHHHT
T ss_pred cchHHHHHHHHHHHHHHcccc---------cc----------CCCCCHHHHHHHHHHH---------------HHHHHHc
Confidence 456778888888777653210 11 1135666666666654 3345566
Q ss_pred CChHHHHHHHHHHhhC----CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC---CCC--HHhHHHHHHHHHhc
Q 037911 219 NCIDQCWQVYEEMGRI----GICP-NTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGF---DPD--LVTYNTLISSYCKK 288 (609)
Q Consensus 219 ~~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~--~~~~~~li~~~~~~ 288 (609)
|++++|...|.+..+. +-.. -..+|+.+...|.+.|++++|+..+++..+.-. .+. ..+++.+...|..
T Consensus 50 g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~- 128 (307)
T 2ifu_A 50 KQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP- 128 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-
Confidence 7777777776665432 1000 134566666677777777777777776544310 111 2456666666666
Q ss_pred CCHhHHHHHHHHHhhCCccC-----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHc
Q 037911 289 GRLNDAFYLYRIMYRRNVLP-----DLVTYTTLMNGLCKEGKVREAHQLFHRMVHR----GLSPD-IVSYNTLIFAYCKE 358 (609)
Q Consensus 289 g~~~~a~~~~~~~~~~~~~p-----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~ 358 (609)
|++++|+..|++..+..... ...++..+...+.+.|++++|...|++..+. +..+. ...+..+..++...
T Consensus 129 g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~ 208 (307)
T 2ifu_A 129 LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHR 208 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHc
Confidence 77777777777665421110 1345666666777777777777777766542 11111 12444555555666
Q ss_pred CChHHHHHHHHHHH
Q 037911 359 GKMQESKSLLYEMM 372 (609)
Q Consensus 359 g~~~~A~~~~~~~~ 372 (609)
|++++|...|++.+
T Consensus 209 g~~~~A~~~~~~al 222 (307)
T 2ifu_A 209 ADYVAAQKCVRESY 222 (307)
T ss_dssp TCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHh
Confidence 77777777777666
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=8.4e-08 Score=89.81 Aligned_cols=167 Identities=13% Similarity=0.070 Sum_probs=111.0
Q ss_pred CCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC
Q 037911 160 PHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPN 239 (609)
Q Consensus 160 ~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~ 239 (609)
|.+...+..+.. .+.+.|++++|+..|+++.+.. +.+...+..+...+.+.|++++|...++++... .|+
T Consensus 114 p~~~~~~~~~a~-------~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~ 183 (287)
T 3qou_A 114 PREEELXAQQAM-------QLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQD 183 (287)
T ss_dssp CCHHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCS
T ss_pred CCchhhHHHHHH-------HHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcc
Confidence 455555666665 6778888888888888887754 456677777778888888888888888877653 344
Q ss_pred HHHHHH-HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccC-CHhhHHHHH
Q 037911 240 THTFNI-LTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLP-DLVTYTTLM 317 (609)
Q Consensus 240 ~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~ll 317 (609)
...... ....+...++.+.|...+++..... +.+...+..+...+...|++++|+..|+++.+..... +...+..++
T Consensus 184 ~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~ 262 (287)
T 3qou_A 184 TRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQ 262 (287)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHH
Confidence 433222 2223556666777777777776653 3356667777777777777777777777777654321 245666777
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 037911 318 NGLCKEGKVREAHQLFHRMV 337 (609)
Q Consensus 318 ~~~~~~~~~~~a~~~~~~m~ 337 (609)
..+...|+.++|...|++..
T Consensus 263 ~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 263 EILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHcCCCCcHHHHHHHHH
Confidence 77777777777776666544
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=7.3e-08 Score=100.15 Aligned_cols=156 Identities=10% Similarity=-0.035 Sum_probs=119.4
Q ss_pred CCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 037911 139 NNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKL 218 (609)
Q Consensus 139 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 218 (609)
.|++++|.+.++++++. .|.+...+..+.. .|...|++++|++.|++..+.. +.+...+..+..++...
T Consensus 2 ~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~-------~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~ 70 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH---RPQDFVAWLMLAD-------AELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQ 70 (568)
T ss_dssp ----------------------CCHHHHHHHHH-------HHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHh---CCCCHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 47888999999988865 4567788888887 8999999999999999999865 55788999999999999
Q ss_pred CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc---CCHhHHH
Q 037911 219 NCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKK---GRLNDAF 295 (609)
Q Consensus 219 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~ 295 (609)
|++++|.+.|++..+.. +.+...+..+..++.+.|++++|.+.+++..+.. +.+...+..+...+... |+.++|.
T Consensus 71 g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~ 148 (568)
T 2vsy_A 71 QRHAEAAVLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLS 148 (568)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHH
T ss_pred CCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHH
Confidence 99999999999998753 4467889999999999999999999999998874 33577888999999999 9999999
Q ss_pred HHHHHHhhCCcc
Q 037911 296 YLYRIMYRRNVL 307 (609)
Q Consensus 296 ~~~~~~~~~~~~ 307 (609)
+.+++..+.+..
T Consensus 149 ~~~~~al~~~p~ 160 (568)
T 2vsy_A 149 AQVRAAVAQGVG 160 (568)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHhcCCc
Confidence 999999886543
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.81 E-value=7e-08 Score=91.45 Aligned_cols=93 Identities=9% Similarity=0.050 Sum_probs=52.9
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHhhCCCC---CcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhC----CCCC-
Q 037911 132 IVHILAWNNKFSFAMKMLCELVELVKDCP---HSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDV----GFQP- 203 (609)
Q Consensus 132 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~----~~~~- 203 (609)
.+.++...|++++|...+.++.+...... .....+..+.. .|...|++++|+..|++.++. |-..
T Consensus 42 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~-------~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~ 114 (307)
T 2ifu_A 42 AAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGM-------MLKDLQRMPEAVQYIEKASVMYVENGTPDT 114 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HHHHTTCGGGGHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------HHHhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 35567778888888888887776532211 11334555555 677777777777777776542 1000
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 037911 204 SIVSCNFLLNGLLKLNCIDQCWQVYEEMG 232 (609)
Q Consensus 204 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 232 (609)
-..+++.+..+|.. |++++|++.|++..
T Consensus 115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al 142 (307)
T 2ifu_A 115 AAMALDRAGKLMEP-LDLSKAVHLYQQAA 142 (307)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Confidence 12344445555555 55555555555543
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.4e-07 Score=97.93 Aligned_cols=154 Identities=10% Similarity=-0.039 Sum_probs=119.6
Q ss_pred hCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 037911 183 VGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGF 262 (609)
Q Consensus 183 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 262 (609)
.|++++|++.|+++.+.. +.+...|..+...+...|++++|.+.|++..+.. +.+...+..+...+...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999998764 4568899999999999999999999999998863 44678899999999999999999999
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhc---CCHHHHHHHHHHHHHC
Q 037911 263 LEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKE---GKVREAHQLFHRMVHR 339 (609)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~---~~~~~a~~~~~~m~~~ 339 (609)
+++..+.. +.+...+..+..+|.+.|++++|.+.|++..+.... +...+..+...+... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99998874 336788999999999999999999999999887543 677888999999999 9999999999999876
Q ss_pred C
Q 037911 340 G 340 (609)
Q Consensus 340 g 340 (609)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.79 E-value=5e-07 Score=80.25 Aligned_cols=88 Identities=11% Similarity=-0.014 Sum_probs=41.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCC
Q 037911 421 LIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGR 500 (609)
Q Consensus 421 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 500 (609)
+...+...|++++|...+++.. .|+...+..+...+.+.|++++|+..|++..+... .+...|..+..++...|+
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHccc
Confidence 3444444555555555544432 23444455555555555555555555555444321 233444444455555555
Q ss_pred HhHHHHHHHHHHH
Q 037911 501 SGEAVSLMDEMLE 513 (609)
Q Consensus 501 ~~~A~~~~~~~~~ 513 (609)
+++|+..++++.+
T Consensus 87 ~~~A~~~~~~al~ 99 (213)
T 1hh8_A 87 YDLAIKDLKEALI 99 (213)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555544
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.1e-05 Score=75.97 Aligned_cols=135 Identities=8% Similarity=-0.045 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-C-ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChH------
Q 037911 186 IRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKL-N-CIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVD------ 257 (609)
Q Consensus 186 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~------ 257 (609)
++++++.++.++... +.+..+|+.-..++... + +.++++++++++.+.. +-|..+|+.-...+.+.|.++
T Consensus 105 l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~ 182 (349)
T 3q7a_A 105 LEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQ 182 (349)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhh
Confidence 555555555555433 34444555444444443 3 4455555555554432 233444444333333333333
Q ss_pred --HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC-------HhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcC
Q 037911 258 --KVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGR-------LNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEG 324 (609)
Q Consensus 258 --~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~ 324 (609)
++++.++++.+.. .-|..+|+.....+.+.++ ++++++.+++.....+. |...|+.+-..+.+.|
T Consensus 183 ~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 183 WGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFS 256 (349)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcC
Confidence 5555555555543 2245555555555544443 45555555555554433 5555554444444433
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.73 E-value=1.7e-06 Score=81.19 Aligned_cols=162 Identities=8% Similarity=0.019 Sum_probs=112.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHH
Q 037911 422 IVALCQDNRPFAATSLLERIGQDGY-VPSL----EIYNELMESLCKCDSVADALLLKDEMVDRNIK-PS----LSTYRAL 491 (609)
Q Consensus 422 l~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l 491 (609)
+..+...|++++|...+++...... .++. ..+..+...+...|++++|+..+++..+.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4556666777777777766644321 1221 13344666677778899999999888874221 22 2368888
Q ss_pred HHHHhcCCCHhHHHHHHHHHHHC-----CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC----CCC-hhcHHH
Q 037911 492 ICCFCGIGRSGEAVSLMDEMLES-----GMLPD-SQICRVLINGYCMEKDVNKAEALLGFFAKKFQ----IYD-TESYNA 560 (609)
Q Consensus 492 i~~~~~~g~~~~A~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~-~~~~~~ 560 (609)
..+|...|++++|+..++++.+. +..+. ..++..+...|.+.|++++|...+++..+... .+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 88899999999999999888741 11111 23678889999999999999999887775321 122 467888
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHH
Q 037911 561 VFNMFAEDGD-LSKLMELQKRFLR 583 (609)
Q Consensus 561 l~~~~~~~g~-~~~A~~~~~~m~~ 583 (609)
+..+|.+.|+ +++|.+.+++.+.
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8899999994 6999999988864
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.71 E-value=4.8e-07 Score=72.50 Aligned_cols=98 Identities=10% Similarity=0.074 Sum_probs=68.2
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCH
Q 037911 126 SSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSI 205 (609)
Q Consensus 126 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 205 (609)
...+...+..+.+.|++++|++.|+++++. .|.+..++..+.. +|.+.|++++|+..|++.++.+ +.+.
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~-------~~~~~~~~~~A~~~~~~al~~~-p~~~ 81 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAA-------CLTKLMEFQRALDDCDTCIRLD-SKFI 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhh-------HHHhhccHHHHHHHHHHHHHhh-hhhh
Confidence 345556667777777777777777777765 4556666666666 6777777777777777777654 4556
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 037911 206 VSCNFLLNGLLKLNCIDQCWQVYEEMGRI 234 (609)
Q Consensus 206 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 234 (609)
..|..+..++...|++++|.+.|++..+.
T Consensus 82 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 82 KGYIRKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 67777777777777777777777777663
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.69 E-value=5.5e-07 Score=72.16 Aligned_cols=104 Identities=10% Similarity=-0.023 Sum_probs=67.5
Q ss_pred HHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHH
Q 037911 487 TYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFA 566 (609)
Q Consensus 487 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 566 (609)
.+......|.+.|++++|++.|+++++.. +.+...|..+..++.+.|++++|+..+++.++.. +.+...|..+..+|.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 45555666667777777777777766543 3456666677777777777777777777766653 334456777777777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 037911 567 EDGDLSKLMELQKRFLRLGFAPNNLTCK 594 (609)
Q Consensus 567 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 594 (609)
..|++++|++.|++.++. .|+.....
T Consensus 93 ~~~~~~~A~~~~~~al~l--~P~~~~a~ 118 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV--DPSNEEAR 118 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred HCCCHHHHHHHHHHHHHH--CcCCHHHH
Confidence 777777777777777754 55554433
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.68 E-value=1.1e-07 Score=88.52 Aligned_cols=98 Identities=13% Similarity=0.129 Sum_probs=75.4
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCC
Q 037911 125 TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPS 204 (609)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 204 (609)
+...+..++..+...|++++|+..|+++++. .|.+...+..+.. .|.+.|++++|+..++++++.. +.+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~-------~~~~~~~~~~A~~~~~~al~~~-p~~ 71 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRAL-------CYLKMQQPEQALADCRRALELD-GQS 71 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHTTSC-TTC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCccHHHHHHHHH-------HHHHhcCHHHHHHHHHHHHHhC-CCC
Confidence 4567777788888888888888888888876 4456677777776 7888888888888888887754 456
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 037911 205 IVSCNFLLNGLLKLNCIDQCWQVYEEMGR 233 (609)
Q Consensus 205 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 233 (609)
...+..+..++...|++++|...|++..+
T Consensus 72 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 72 VKAHFFLGQCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777778888888888888888877755
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.7e-06 Score=78.62 Aligned_cols=194 Identities=9% Similarity=-0.024 Sum_probs=120.7
Q ss_pred hCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCC-------------
Q 037911 138 WNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPS------------- 204 (609)
Q Consensus 138 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~------------- 204 (609)
..++...|.+.|.++.+. .|...+.+..++.|-......+.+.++..+++..+.+..+. .|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~---dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~ 92 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNY---DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYG 92 (282)
T ss_dssp TTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTC
T ss_pred cCCCHHHHHHHHHHHHHh---ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCccc
Confidence 468888899999999876 56778888888655444444666777777777777766551 111
Q ss_pred ---------HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-
Q 037911 205 ---------IVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPD- 274 (609)
Q Consensus 205 ---------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~- 274 (609)
...+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|.
T Consensus 93 ~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~ 169 (282)
T 4f3v_A 93 DITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFL 169 (282)
T ss_dssp CCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHH
T ss_pred ccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-Cccc
Confidence 1233345566777778888888777776543 433355555556777777777777776444321 111
Q ss_pred -HHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037911 275 -LVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPD--LVTYTTLMNGLCKEGKVREAHQLFHRMVHR 339 (609)
Q Consensus 275 -~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 339 (609)
...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 22455566667777777777777776664322132 224445555666677777777777776664
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.66 E-value=8.5e-06 Score=76.40 Aligned_cols=91 Identities=14% Similarity=0.180 Sum_probs=41.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC-CCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCc-cC----HHHHHHH
Q 037911 317 MNGLCKEGKVREAHQLFHRMVHRG-LSPDI----VSYNTLIFAYCKEGKMQESKSLLYEMMGNGIY-PD----TFTCQII 386 (609)
Q Consensus 317 l~~~~~~~~~~~a~~~~~~m~~~g-~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l 386 (609)
+..+...|++++|..++++..+.. ..|+. ..+..+...+...|++++|...++++++.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 344455555555555555555431 11111 11222333444445555555555555542111 11 1234555
Q ss_pred HHHHHccCCHHHHHHHHHHHH
Q 037911 387 VQGYGKEGRLLSALNLVVELQ 407 (609)
Q Consensus 387 ~~~~~~~~~~~~A~~~~~~~~ 407 (609)
...|...|++++|+..++++.
T Consensus 162 g~~y~~~g~~~~A~~~~~~al 182 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 555555555555555555443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.66 E-value=1.1e-06 Score=74.23 Aligned_cols=129 Identities=10% Similarity=0.072 Sum_probs=70.0
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCH
Q 037911 126 SSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSI 205 (609)
Q Consensus 126 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 205 (609)
+..+..++..+...|++++|...++++++. .|.+..++..+.. .+...|++++|+..+++..+.. +.+.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~-------~~~~~~~~~~A~~~~~~a~~~~-~~~~ 81 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSL-------AYLRTECYGYALGDATRAIELD-KKYI 81 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCChHHHHHHHH-------HHHHcCCHHHHHHHHHHHHHhC-cccH
Confidence 344555666666666666666666666654 2334555555555 5666666666666666666543 3345
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHH--HHHHHHHcCChHHHHHHHHHH
Q 037911 206 VSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNI--LTHVFCKNGDVDKVNGFLEKI 266 (609)
Q Consensus 206 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~--l~~~~~~~g~~~~a~~~~~~~ 266 (609)
..|..+..++...|++++|...|++..+.. +.+...+.. ++..+...|++++|.+.+...
T Consensus 82 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 82 KGYYRRAASNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 555556666666666666666666655432 122233322 222244455555555555443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.66 E-value=5.3e-07 Score=74.59 Aligned_cols=98 Identities=10% Similarity=0.012 Sum_probs=63.7
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCC
Q 037911 125 TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPS 204 (609)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 204 (609)
+...+..+...+.+.|++++|...|+.++.. .|.+...+..+.. +|...|++++|+..|+++.+.. +.+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~-------~~~~~g~~~~Ai~~~~~al~l~-P~~ 103 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAA-------IYQIKEQFQQAADLYAVAFALG-KND 103 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHS-SSC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHH-------HHHHHccHHHHHHHHHHHHhhC-CCC
Confidence 4556666666666777777777777776655 3455666666665 6666777777777777766654 345
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 037911 205 IVSCNFLLNGLLKLNCIDQCWQVYEEMGR 233 (609)
Q Consensus 205 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 233 (609)
...|..+..+|...|++++|...|++..+
T Consensus 104 ~~~~~~lg~~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 104 YTPVFHTGQCQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55666666666666666666666666665
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.65 E-value=2.5e-06 Score=75.62 Aligned_cols=127 Identities=6% Similarity=-0.094 Sum_probs=80.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 037911 208 CNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCK 287 (609)
Q Consensus 208 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 287 (609)
+..+...+...|++++|.+.|++.. .|+...+..+...+...|++++|...+++..+.. +.+...+..+..++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 3344555666677777777666553 3466666666666777777777777777666553 2345566666677777
Q ss_pred cCCHhHHHHHHHHHhhCCcc--------------C-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037911 288 KGRLNDAFYLYRIMYRRNVL--------------P-DLVTYTTLMNGLCKEGKVREAHQLFHRMVHR 339 (609)
Q Consensus 288 ~g~~~~a~~~~~~~~~~~~~--------------p-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 339 (609)
.|++++|++.|++..+.... | ....+..+..++.+.|++++|...|+...+.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 77777777777776654221 1 1245666677777777777777777777665
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=1.9e-05 Score=74.22 Aligned_cols=223 Identities=9% Similarity=0.043 Sum_probs=155.2
Q ss_pred HhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc-C-ChHH
Q 037911 182 KVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLN-CIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKN-G-DVDK 258 (609)
Q Consensus 182 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~-g-~~~~ 258 (609)
+.+..++|+++++++++.+ +-+..+|+.--.++...| .+++++++++.+.... +-+..+|+.-...+.+. + +.++
T Consensus 66 ~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred hCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHH
Confidence 3445578999999999876 567778998888888888 5999999999998864 45677788777777776 7 8899
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHh--------HHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCC-----
Q 037911 259 VNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLN--------DAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGK----- 325 (609)
Q Consensus 259 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--------~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~----- 325 (609)
++++++++.+.. +.|..+|+.-.-.+.+.|.++ ++++.++++.+.++. |...|+.....+.+.++
T Consensus 144 EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 144 EIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccch
Confidence 999999999875 346777777666666666666 899999999987766 78888888877777775
Q ss_pred --HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh--------------------HHHHHHHHHHHHCC-----Ccc
Q 037911 326 --VREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKM--------------------QESKSLLYEMMGNG-----IYP 378 (609)
Q Consensus 326 --~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~~~~~~-----~~~ 378 (609)
++++++.++++.... +-|...|+.+-..+.+.|.. ........++...+ -.+
T Consensus 222 ~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLP 300 (349)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSC
T ss_pred HHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCC
Confidence 678888888887753 33667777766666666553 11122222222111 023
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 037911 379 DTFTCQIIVQGYGKEGRLLSALNLVVELQRF 409 (609)
Q Consensus 379 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 409 (609)
.......++..|...|+.++|.++++.+.+.
T Consensus 301 s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 301 VPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 4555666666666666666666666666543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.64 E-value=2.7e-06 Score=79.84 Aligned_cols=128 Identities=7% Similarity=0.009 Sum_probs=87.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--HHHHHHHHHHHhcCCCHhHHHHHHHHHHHC--CCCCC----HHHH
Q 037911 455 ELMESLCKCDSVADALLLKDEMVDRNI---KPS--LSTYRALICCFCGIGRSGEAVSLMDEMLES--GMLPD----SQIC 523 (609)
Q Consensus 455 ~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~p~----~~~~ 523 (609)
.+...+...|++++|+..+++..+... .+. ..+|+.+...|...|++++|+..++++.+. ....+ ..++
T Consensus 120 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~ 199 (293)
T 2qfc_A 120 YVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVR 199 (293)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHH
Confidence 355556677788888888887764321 111 346777788888888888888888887631 11111 2477
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCC----CC-ChhcHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 037911 524 RVLINGYCMEKDVNKAEALLGFFAKKFQ----IY-DTESYNAVFNMFAEDGDLSKL-MELQKRFL 582 (609)
Q Consensus 524 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~-~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 582 (609)
..++..|...|++++|...+++..+... .. -..+|..+..+|.+.|++++| ...+++.+
T Consensus 200 ~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 200 YNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 7888888888888888888887764321 11 145677788888888888888 67677765
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.62 E-value=2.6e-07 Score=79.36 Aligned_cols=135 Identities=8% Similarity=0.052 Sum_probs=85.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccCCH--HH
Q 037911 462 KCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLING-YCMEKDV--NK 538 (609)
Q Consensus 462 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~--~~ 538 (609)
..|++++|...+++..+... .+...|..+..+|...|++++|+..|+++.+.. +.+...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 45677777777777665432 355667777777777777777777777776543 3355666666666 6677776 77
Q ss_pred HHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHh
Q 037911 539 AEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMIHSLW 601 (609)
Q Consensus 539 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 601 (609)
|...++.+.+.. +.+...+..+..+|...|++++|.+.++++++. .|+......++..+.
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~i~ 159 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL--NSPRINRTQLVESIN 159 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CCTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh--CCCCccHHHHHHHHH
Confidence 777777777653 224466677777777777777777777777754 444444444544443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.62 E-value=1.3e-06 Score=73.76 Aligned_cols=129 Identities=9% Similarity=-0.037 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037911 451 EIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGY 530 (609)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 530 (609)
..+..+...+...|++++|...|++..+... .+...+..+..++...|++++|...+++..+.. +.+...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 4566677778888999999998888877542 357778888888888999999999998888753 44677888888889
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCChhcHHHH--HHHHHhcCCHHHHHHHHHHHH
Q 037911 531 CMEKDVNKAEALLGFFAKKFQIYDTESYNAV--FNMFAEDGDLSKLMELQKRFL 582 (609)
Q Consensus 531 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~m~ 582 (609)
...|++++|...++++.+.. +.+...+..+ +..+...|++++|++.+++..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 99999999999998888763 2234445333 334777889999999888765
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.60 E-value=3.9e-06 Score=78.74 Aligned_cols=169 Identities=8% Similarity=-0.067 Sum_probs=100.0
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcH----HhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCC
Q 037911 126 SSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSV----DVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGF 201 (609)
Q Consensus 126 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~ 201 (609)
...+...+..+...|++++|.+.+.+.++..+.. ... ..+..+.. .|...|++++|+..++++.+...
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~-------~~~~~~~~~~A~~~~~~al~~~~ 146 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH-PEFQQFLQWQYYVAA-------YVLKKVDYEYCILELKKLLNQQL 146 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHHHHH-------HHHTSSCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCC-hhHHHHHHHHHHHHH-------HHhcCCCHHHHHHHHHHHHHHHh
Confidence 3445566777888889999988888887652211 111 11222333 56677788888888887765321
Q ss_pred ---CCC--HHHHHHHHHHHHhcCChHHHHHHHHHHhhC-CCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 037911 202 ---QPS--IVSCNFLLNGLLKLNCIDQCWQVYEEMGRI-GICPN-----THTFNILTHVFCKNGDVDKVNGFLEKIEEEG 270 (609)
Q Consensus 202 ---~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 270 (609)
.+. ..+|+.+...|...|++++|...|++..+. ...++ ..++..+...|.+.|++++|...+++..+..
T Consensus 147 ~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~ 226 (293)
T 2qfc_A 147 TGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp CSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 111 346777777777777777777777776521 00111 1456666667777777777777776655431
Q ss_pred ----CCC-CHHhHHHHHHHHHhcCCHhHH-HHHHHHHh
Q 037911 271 ----FDP-DLVTYNTLISSYCKKGRLNDA-FYLYRIMY 302 (609)
Q Consensus 271 ----~~~-~~~~~~~li~~~~~~g~~~~a-~~~~~~~~ 302 (609)
... -..+|..+..+|.+.|+.++| ...+++..
T Consensus 227 ~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 227 CRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 011 134556666666666666666 55555443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.59 E-value=7.5e-07 Score=73.70 Aligned_cols=101 Identities=12% Similarity=-0.051 Sum_probs=79.3
Q ss_pred CCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC
Q 037911 160 PHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPN 239 (609)
Q Consensus 160 ~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~ 239 (609)
|.+...+..+.. .+.+.|++++|+..|+++++.. +.+...|..+..++...|++++|+..|++..+.. +.+
T Consensus 33 p~~~~~~~~lg~-------~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~ 103 (151)
T 3gyz_A 33 DDMMDDIYSYAY-------DFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KND 103 (151)
T ss_dssp HHHHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSC
T ss_pred HHHHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCC
Confidence 445556666666 7888888888888888888765 5577788888888888888888888888887753 345
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 037911 240 THTFNILTHVFCKNGDVDKVNGFLEKIEEE 269 (609)
Q Consensus 240 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 269 (609)
...|..+..+|.+.|++++|...|++..+.
T Consensus 104 ~~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 104 YTPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 677788888888888888888888888776
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.58 E-value=2.6e-06 Score=67.76 Aligned_cols=98 Identities=17% Similarity=0.245 Sum_probs=64.0
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCH
Q 037911 126 SSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSI 205 (609)
Q Consensus 126 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 205 (609)
...|..++..+...|++++|.+.++++++. .|.+...+..+.. .+...|++++|+..|+++.+.. +.+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~-------~~~~~~~~~~A~~~~~~~~~~~-~~~~ 77 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAWYNLGN-------AYYKQGDYDEAIEYYQKALELD-PNNA 77 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcCcHHHHHHHHH-------HHHHhCCHHHHHHHHHHHHHhC-CccH
Confidence 456666777777777777777777777665 2344555555655 6667777777777777766643 3455
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 037911 206 VSCNFLLNGLLKLNCIDQCWQVYEEMGRI 234 (609)
Q Consensus 206 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 234 (609)
..+..+...+...|++++|...++++.+.
T Consensus 78 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 78 EAWYNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 56666666666666666666666666553
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.2e-06 Score=70.81 Aligned_cols=119 Identities=10% Similarity=0.079 Sum_probs=74.4
Q ss_pred CCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCC
Q 037911 123 KPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQ 202 (609)
Q Consensus 123 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 202 (609)
+.+...|..++..+...|++++|...++++++. .|.+..++..+.. .|...|++++|++.++++.+.. +
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~la~-------~~~~~~~~~~A~~~~~~a~~~~-~ 81 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR---NPKDAKLYSNRAA-------CYTKLLEFQLALKDCEECIQLE-P 81 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT---CTTCHHHHHHHHH-------HHTTTTCHHHHHHHHHHHHHHC-T
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCcHHHHHHHHH-------HHHHhccHHHHHHHHHHHHHhC-C
Confidence 335666777777777777777777777777654 3445566666665 6677777777777777776643 3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 037911 203 PSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKN 253 (609)
Q Consensus 203 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 253 (609)
.+...+..+..++...|++++|.+.|++..+.. +.+...+..+..++.+.
T Consensus 82 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 82 TFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHh
Confidence 455666666666777777777777776665532 12234444444444443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=2e-06 Score=69.14 Aligned_cols=119 Identities=14% Similarity=0.065 Sum_probs=66.4
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCC
Q 037911 125 TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPS 204 (609)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 204 (609)
+...+..++..+...|++++|...++++++. .|.+...+..+.. .+...|++++|++.+++..+.. +.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~-------~~~~~~~~~~A~~~~~~~~~~~-~~~ 79 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL---NPANAVYFCNRAA-------AYSKLGNYAGAVQDCERAICID-PAY 79 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc---CCCCHHHHHHHHH-------HHHHhhchHHHHHHHHHHHhcC-ccC
Confidence 3445556666666666666666666666654 2334555555555 5666666666666666666543 334
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 037911 205 IVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGD 255 (609)
Q Consensus 205 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 255 (609)
...+..+...+...|++++|...|++..+.. +.+...+..+..++.+.|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 80 SKAYGRMGLALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 5555555556666666666666666555432 2234444445555544443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.56 E-value=3.2e-06 Score=76.82 Aligned_cols=189 Identities=10% Similarity=-0.073 Sum_probs=129.9
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHHhcCChHHHHHHHHHHhhCCCCCC------------
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFL-------LNGLLKLNCIDQCWQVYEEMGRIGICPN------------ 239 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------l~~~~~~~~~~~a~~~~~~m~~~~~~~~------------ 239 (609)
.+ ..++...|.+.|.++.+.. +-....|+.+ ..++.+.++..++...+..-.+ +.|+
T Consensus 16 ~~-~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y 91 (282)
T 4f3v_A 16 SM-LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLY 91 (282)
T ss_dssp HH-TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTT
T ss_pred cc-cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcc
Confidence 44 5899999999999999875 5667788887 5666666666666666655444 2222
Q ss_pred ----------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCC
Q 037911 240 ----------THTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPD 309 (609)
Q Consensus 240 ----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 309 (609)
..........+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|.
T Consensus 92 ~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~ 168 (282)
T 4f3v_A 92 GDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKF 168 (282)
T ss_dssp CCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHH
T ss_pred cccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-Ccc
Confidence 1223345666778888888888888877653 444355566667888888888888887554431 111
Q ss_pred --HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 037911 310 --LVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPD--IVSYNTLIFAYCKEGKMQESKSLLYEMMGN 374 (609)
Q Consensus 310 --~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 374 (609)
...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 169 ~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 169 LAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 23566777788888888888888888875432243 234555666777888888888888888765
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.4e-06 Score=76.60 Aligned_cols=156 Identities=13% Similarity=0.015 Sum_probs=81.4
Q ss_pred HHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC----CCC-CCHHHHHHHHHHHHHcCC
Q 037911 181 VKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRI----GIC-PNTHTFNILTHVFCKNGD 255 (609)
Q Consensus 181 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~~~~l~~~~~~~g~ 255 (609)
...|++++|.+.++.+.. .......++..+...+...|++++|...+++..+. +.. ....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 456777888775544433 21234556777777777777777777777776541 111 123455556666666677
Q ss_pred hHHHHHHHHHHHHc----CCCC--CHHhHHHHHHHHHhcCCHhHHHHHHHHHhhC----Ccc-CCHhhHHHHHHHHHhcC
Q 037911 256 VDKVNGFLEKIEEE----GFDP--DLVTYNTLISSYCKKGRLNDAFYLYRIMYRR----NVL-PDLVTYTTLMNGLCKEG 324 (609)
Q Consensus 256 ~~~a~~~~~~~~~~----~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-p~~~~~~~ll~~~~~~~ 324 (609)
+++|...+++..+. +..+ ....+..+...+...|++++|...+++..+. +.. .-..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 77766666665442 1011 1234555556666666666666666555431 100 01122344444555555
Q ss_pred CHHHHHHHHHHHH
Q 037911 325 KVREAHQLFHRMV 337 (609)
Q Consensus 325 ~~~~a~~~~~~m~ 337 (609)
++++|.+.+++..
T Consensus 162 ~~~~A~~~~~~al 174 (203)
T 3gw4_A 162 NLLEAQQHWLRAR 174 (203)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 5555555554443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=5.5e-07 Score=74.56 Aligned_cols=97 Identities=12% Similarity=-0.058 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHH
Q 037911 486 STYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMF 565 (609)
Q Consensus 486 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 565 (609)
..+..+...+...|++++|+..|++++... +.+...+..+..+|...|++++|...|+++.... +.++..+..+..+|
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 344555556666666666666666666532 3355566666666666666666666666666552 22445566666666
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 037911 566 AEDGDLSKLMELQKRFLRL 584 (609)
Q Consensus 566 ~~~g~~~~A~~~~~~m~~~ 584 (609)
...|++++|++.|++.++.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 6677777777766666643
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.1e-06 Score=75.37 Aligned_cols=120 Identities=9% Similarity=0.069 Sum_probs=79.4
Q ss_pred hCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HH
Q 037911 138 WNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNG-LL 216 (609)
Q Consensus 138 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~-~~ 216 (609)
..|++++|...++++++. .|.+...+..+.. .|...|++++|+..|+++.+.. +.+...+..+..+ +.
T Consensus 22 ~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~-------~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~ 90 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRA---NPQNSEQWALLGE-------YYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYY 90 (177)
T ss_dssp -----CCCCHHHHHHHHH---CCSCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHh---CCCcHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 456777777777777765 3455666666666 7777888888888887777654 3456666666666 66
Q ss_pred hcCCh--HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 037911 217 KLNCI--DQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEE 269 (609)
Q Consensus 217 ~~~~~--~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 269 (609)
..|++ ++|...+++..+.. +.+...+..+...+...|++++|...+++..+.
T Consensus 91 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 91 QASQHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hcCCcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 67776 77777777776642 334566666777777777777777777777665
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.53 E-value=2.7e-06 Score=68.71 Aligned_cols=118 Identities=11% Similarity=-0.040 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037911 449 SLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLIN 528 (609)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 528 (609)
+...+..+...+.+.|++++|...|++..+... .+...+..+..++...|++++|+..++++.+.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 344555556666666666666666666655421 244555555566666666666666666665532 234555555666
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcC
Q 037911 529 GYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDG 569 (609)
Q Consensus 529 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 569 (609)
++.+.|++++|.+.+++..+.. +.+...+..+..++...|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 6666666666666666555442 112234444444444433
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.52 E-value=3.8e-06 Score=66.80 Aligned_cols=97 Identities=15% Similarity=0.143 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037911 451 EIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGY 530 (609)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 530 (609)
..+..+...+...|++++|.++++++.+... .+..++..+...+...|++++|..+++++.+.. +.+..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 3444444555555555555555555544321 233444444455555555555555555554422 22344444445555
Q ss_pred HccCCHHHHHHHHHHHHHc
Q 037911 531 CMEKDVNKAEALLGFFAKK 549 (609)
Q Consensus 531 ~~~g~~~~A~~~~~~~~~~ 549 (609)
...|++++|...++++.+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 5555555555555544433
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.5e-06 Score=76.39 Aligned_cols=97 Identities=11% Similarity=-0.075 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhC----CCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCC-CCH
Q 037911 207 SCNFLLNGLLKLNCIDQCWQVYEEMGRI----GICP--NTHTFNILTHVFCKNGDVDKVNGFLEKIEEE----GFD-PDL 275 (609)
Q Consensus 207 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~ 275 (609)
++..+...+...|++++|.+.+++..+. +-.+ ....+..+...+...|++++|...+++..+. +.. .-.
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 147 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 4444555555555555555555554331 1011 1234555666666667777776666665432 100 012
Q ss_pred HhHHHHHHHHHhcCCHhHHHHHHHHHhh
Q 037911 276 VTYNTLISSYCKKGRLNDAFYLYRIMYR 303 (609)
Q Consensus 276 ~~~~~li~~~~~~g~~~~a~~~~~~~~~ 303 (609)
.++..+...+...|++++|.+.+++..+
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2356666777778888888777776654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.50 E-value=2.4e-06 Score=81.74 Aligned_cols=130 Identities=14% Similarity=0.010 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCC
Q 037911 451 EIYNELMESLCKCDSVADALLLKDEMVDRNIKPS--------------LSTYRALICCFCGIGRSGEAVSLMDEMLESGM 516 (609)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 516 (609)
..+..+...+.+.|++++|+..|++.++...... ...|..+..+|.+.|++++|+..++++++..
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 226 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD- 226 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 3455555555566666666666666555432111 3566667777777777777777777777643
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 037911 517 LPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKL-MELQKRFL 582 (609)
Q Consensus 517 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 582 (609)
+.+...+..+..+|...|++++|...|+++.+.. +.+...+..+..++...|++++| .+.|++|.
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356667777777777777777777777777652 22445666777777777777776 44555554
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=3.2e-06 Score=67.90 Aligned_cols=118 Identities=8% Similarity=-0.070 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037911 450 LEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLING 529 (609)
Q Consensus 450 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 529 (609)
...+..+...+...|++++|...+++..+... .+...+..+..++...|++++|...++++.+.. +.+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 34455555556666666666666666554321 244555555566666666666666666665532 2335555556666
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCC
Q 037911 530 YCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGD 570 (609)
Q Consensus 530 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 570 (609)
+...|++++|...+++..+.. +.+...+..+..++...|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 666666666666666655542 2233445555555555444
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.47 E-value=2.1e-06 Score=79.89 Aligned_cols=99 Identities=9% Similarity=-0.099 Sum_probs=66.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 037911 204 SIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLIS 283 (609)
Q Consensus 204 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 283 (609)
+...+..+...+...|++++|...|++..+.. +.+...|..+..++.+.|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44556666667777777777777777776542 2356666677777777777777777777776653 234566667777
Q ss_pred HHHhcCCHhHHHHHHHHHhhC
Q 037911 284 SYCKKGRLNDAFYLYRIMYRR 304 (609)
Q Consensus 284 ~~~~~g~~~~a~~~~~~~~~~ 304 (609)
+|...|++++|+..|++..+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777776653
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.47 E-value=3.7e-06 Score=80.50 Aligned_cols=153 Identities=8% Similarity=-0.015 Sum_probs=102.3
Q ss_pred CChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCC------------cHHhHHHHhh
Q 037911 104 SDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPH------------SVDVFQDLIS 171 (609)
Q Consensus 104 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------~~~~~~~l~~ 171 (609)
++++.|+..|+.+... .+.+...|..+...+.+.|++++|+..|+++++..+..+. ...++..+..
T Consensus 127 ~~~~~A~~~~~~a~~~--~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEE--KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEECCCCGGGCCHHH--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHH--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 3455565555544431 1125678899999999999999999999999987332210 0355556665
Q ss_pred ccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 037911 172 CTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFC 251 (609)
Q Consensus 172 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 251 (609)
+|.+.|++++|+..|+++++.. +.+..+|..+..++...|++++|...|++..+.. +.+...+..+..++.
T Consensus 205 -------~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 205 -------CHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQ 275 (336)
T ss_dssp -------HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHH
T ss_pred -------HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
Confidence 6777777777777777777754 4566677777777777777777777777776642 334556666666677
Q ss_pred HcCChHHH-HHHHHHHH
Q 037911 252 KNGDVDKV-NGFLEKIE 267 (609)
Q Consensus 252 ~~g~~~~a-~~~~~~~~ 267 (609)
+.|+.+++ ..+++.|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77776666 33455444
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.45 E-value=4.7e-06 Score=66.66 Aligned_cols=97 Identities=9% Similarity=0.080 Sum_probs=66.2
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCH
Q 037911 126 SSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSI 205 (609)
Q Consensus 126 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 205 (609)
+..|..++..+.+.|++++|+..|+++++. .|.+...+..+.. .|.+.|++++|+..|+++++.. +.+.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~-------~~~~~~~~~~A~~~~~~al~~~-p~~~ 72 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAA-------ALAKLMSFPEAIADCNKAIEKD-PNFV 72 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHH-------HHHHhcCHHHHHHHHHHHHHhC-CCcH
Confidence 445666677777777777777777777765 3455666666666 6777777777777777777654 4456
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 037911 206 VSCNFLLNGLLKLNCIDQCWQVYEEMGR 233 (609)
Q Consensus 206 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 233 (609)
..|..+..++...|++++|...|++..+
T Consensus 73 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 73 RAYIRKATAQIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 6666677777777777777777776655
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=1.1e-06 Score=72.70 Aligned_cols=101 Identities=9% Similarity=-0.004 Sum_probs=68.6
Q ss_pred CCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC
Q 037911 160 PHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPN 239 (609)
Q Consensus 160 ~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~ 239 (609)
|.+...+..+.. .+.+.|++++|+..|+++++.. +.+...|..+..++...|++++|+..|++..... +.+
T Consensus 18 p~~~~~~~~~g~-------~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~ 88 (148)
T 2vgx_A 18 SDTLEQLYSLAF-------NQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXE 88 (148)
T ss_dssp HHHHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTC
T ss_pred HhhHHHHHHHHH-------HHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCC
Confidence 334445555555 6777777777777777777654 4566677777777777777777777777776642 334
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 037911 240 THTFNILTHVFCKNGDVDKVNGFLEKIEEE 269 (609)
Q Consensus 240 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 269 (609)
...+..+..++...|++++|...|++..+.
T Consensus 89 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 89 PRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 566666777777777777777777776654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.43 E-value=2.9e-06 Score=68.07 Aligned_cols=105 Identities=15% Similarity=0.024 Sum_probs=64.3
Q ss_pred HHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC--CCC----hhcHHH
Q 037911 487 TYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQ--IYD----TESYNA 560 (609)
Q Consensus 487 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~~~ 560 (609)
++..+...+.+.|++++|+..|+++++.. +-+...|..+..+|.+.|++++|++.+++.++... ..+ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45556666666677777777776666542 33455666666777777777777777766664421 011 124556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 037911 561 VFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCK 594 (609)
Q Consensus 561 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 594 (609)
+..++...|++++|++.|++.++. .||..+..
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~ 120 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVK 120 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHH
Confidence 667777777888888877777754 45554433
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.42 E-value=4.9e-06 Score=66.66 Aligned_cols=106 Identities=13% Similarity=0.086 Sum_probs=80.1
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCC--CC
Q 037911 126 SSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGF--QP 203 (609)
Q Consensus 126 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~~ 203 (609)
..++.-++..+.+.|++++|+..|+++++. .|.+..++..+.. +|.+.|++++|++.|++.++.+. .+
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~---~p~~~~~~~nlg~-------~~~~~~~~~~A~~~~~~al~~~~~~~~ 77 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIEL---DPSNITFYNNKAA-------VYFEEKKFAECVQFCEKAVEVGRETRA 77 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHhHHH-------HHHHhhhHHHHHHHHHHHHHhCcccch
Confidence 456777899999999999999999999987 5667888888887 89999999999999999886431 11
Q ss_pred C----HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHH
Q 037911 204 S----IVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTF 243 (609)
Q Consensus 204 ~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 243 (609)
+ ..+|..+..++...|++++|++.|++.... .||....
T Consensus 78 ~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 78 DYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 1 235666667777777888888877776652 4555443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.42 E-value=5.3e-06 Score=66.36 Aligned_cols=96 Identities=11% Similarity=-0.109 Sum_probs=58.2
Q ss_pred HHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHH
Q 037911 487 TYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFA 566 (609)
Q Consensus 487 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 566 (609)
.|..+...+.+.|++++|+..|+++++.. +.+...+..+..++.+.|++++|...+++..+.. +.+...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 44455555666666666666666666532 3345566666666666666666666666666552 223455666666666
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 037911 567 EDGDLSKLMELQKRFLRL 584 (609)
Q Consensus 567 ~~g~~~~A~~~~~~m~~~ 584 (609)
..|++++|++.|++.++.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 666666666666666644
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.41 E-value=1.3e-05 Score=62.79 Aligned_cols=98 Identities=18% Similarity=0.128 Sum_probs=69.9
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCH
Q 037911 126 SSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSI 205 (609)
Q Consensus 126 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 205 (609)
+..+..++..+...|++++|...+++++.. .|.+...+..+.. .|...|++++|+..+++..+.. +.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~-------~~~~~~~~~~A~~~~~~~~~~~-~~~~ 72 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSA-------AYAKKGDYQKAYEDGCKTVDLK-PDWG 72 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH-------HHHHHTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHH-------HHHhhccHHHHHHHHHHHHHhC-cccH
Confidence 456667777777788888888888877765 3445666666666 6777788888888887777654 3456
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 037911 206 VSCNFLLNGLLKLNCIDQCWQVYEEMGRI 234 (609)
Q Consensus 206 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 234 (609)
..+..+..++...|++++|.+.+++..+.
T Consensus 73 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 73 KGYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 66777777777777777777777777664
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=0.00015 Score=67.89 Aligned_cols=131 Identities=11% Similarity=0.032 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC-hHHHHHH
Q 037911 186 IRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLN--CIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGD-VDKVNGF 262 (609)
Q Consensus 186 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~ 262 (609)
+++++.+++.+.... +.+..+|+.-..++...+ .+++++++++++.+.. +-|...|+.-..++...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 578888888888754 678888888887777777 4789999999988754 4577778777777777787 5888888
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHhc--------------CCHhHHHHHHHHHhhCCccCCHhhHHHHHHHH
Q 037911 263 LEKIEEEGFDPDLVTYNTLISSYCKK--------------GRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGL 320 (609)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~li~~~~~~--------------g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~ 320 (609)
++++.+..+ -|..+|+.....+.+. +.++++++.+++.....+. |...|+-+--.+
T Consensus 168 ~~~~I~~~p-~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll 237 (331)
T 3dss_A 168 TDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLL 237 (331)
T ss_dssp HHHHHHHCS-CCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHH
T ss_pred HHHHHHHCC-CCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 888888753 3677777766655544 3456666666666665444 555555443333
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.38 E-value=4.7e-06 Score=68.38 Aligned_cols=90 Identities=12% Similarity=-0.127 Sum_probs=42.6
Q ss_pred HHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCC
Q 037911 491 LICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGD 570 (609)
Q Consensus 491 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 570 (609)
+...+.+.|++++|+..|++++... +.+...|..+..++.+.|++++|...|+...... +.++..+..+..+|...|+
T Consensus 24 ~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~ 101 (142)
T 2xcb_A 24 LGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQLGD 101 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 3344444555555555555544422 2234444445555555555555555555544432 2233444445555555555
Q ss_pred HHHHHHHHHHHH
Q 037911 571 LSKLMELQKRFL 582 (609)
Q Consensus 571 ~~~A~~~~~~m~ 582 (609)
+++|++.|++.+
T Consensus 102 ~~~A~~~~~~al 113 (142)
T 2xcb_A 102 LDGAESGFYSAR 113 (142)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.37 E-value=4.4e-06 Score=68.55 Aligned_cols=98 Identities=13% Similarity=0.017 Sum_probs=69.4
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCC
Q 037911 125 TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPS 204 (609)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 204 (609)
+...+..++..+.+.|++++|...|+.++.. .|.+...+..+.. .|.+.|++++|+..|+++++.+ +.+
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~-------~~~~~g~~~~A~~~~~~al~~~-p~~ 85 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGA-------CRQSLGLYEQALQSYSYGALMD-INE 85 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHH-------HHHHHhhHHHHHHHHHHHHhcC-CCC
Confidence 4455666677777777777777777777765 4456666666666 6777777777777777777754 445
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 037911 205 IVSCNFLLNGLLKLNCIDQCWQVYEEMGR 233 (609)
Q Consensus 205 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 233 (609)
...+..+..++...|++++|...|++..+
T Consensus 86 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 86 PRFPFHAAECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666777777777777777777777665
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.37 E-value=1.2e-05 Score=63.08 Aligned_cols=97 Identities=9% Similarity=-0.062 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHH
Q 037911 486 STYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMF 565 (609)
Q Consensus 486 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 565 (609)
..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 445555566666666666666666666532 3355566666666667777777777776666552 22445666666777
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 037911 566 AEDGDLSKLMELQKRFLRL 584 (609)
Q Consensus 566 ~~~g~~~~A~~~~~~m~~~ 584 (609)
...|++++|.+.+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 7777777777777777643
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.35 E-value=6.3e-06 Score=66.15 Aligned_cols=112 Identities=13% Similarity=0.090 Sum_probs=86.9
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCC--CC
Q 037911 126 SSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGF--QP 203 (609)
Q Consensus 126 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~~ 203 (609)
+..|..++..+...|++++|...++++++. .|.+...+..+.. .|...|++++|+..++++.+... .+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~la~-------~~~~~~~~~~A~~~~~~~~~~~~~~~~ 73 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL---DPTNMTYITNQAA-------VYFEKGDYNKCRELCEKAIEVGRENRE 73 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH-------HHHHHTCHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CCccHHHHHHHHH-------HHHHhccHHHHHHHHHHHHhhccccch
Confidence 467888899999999999999999999986 3556777777777 89999999999999999887531 11
Q ss_pred C----HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 037911 204 S----IVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHV 249 (609)
Q Consensus 204 ~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 249 (609)
+ ..++..+..++...|++++|.+.|++..+. .|+......+...
T Consensus 74 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 121 (131)
T 1elr_A 74 DYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQA 121 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence 2 667777888888888888888888888774 3565555444433
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.34 E-value=7.1e-06 Score=63.70 Aligned_cols=99 Identities=8% Similarity=-0.000 Sum_probs=69.2
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCC-
Q 037911 125 TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQP- 203 (609)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~- 203 (609)
+...|..++..+...|++++|...++++++. .|.+...+..+.. .|...|++++|+..|+++.+.. +.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~-------~~~~~~~~~~A~~~~~~a~~~~-~~~ 73 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQL---DPEESKYWLMKGK-------ALYNLERYEEAVDCYNYVINVI-EDE 73 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHH---CCCCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHTS-CCT
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh---CcCCHHHHHHHHH-------HHHHccCHHHHHHHHHHHHHhC-ccc
Confidence 4556667777777778888888877777765 3445566666666 6777777777777777777654 33
Q ss_pred -CHHHHHHHHHHHHhc-CChHHHHHHHHHHhhC
Q 037911 204 -SIVSCNFLLNGLLKL-NCIDQCWQVYEEMGRI 234 (609)
Q Consensus 204 -~~~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~ 234 (609)
+...+..+..++... |++++|.+.+++....
T Consensus 74 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 74 YNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp TCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred chHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 466677777777777 7777777777777654
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.32 E-value=1.4e-05 Score=64.84 Aligned_cols=99 Identities=14% Similarity=0.153 Sum_probs=72.9
Q ss_pred CCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCC
Q 037911 124 PTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQP 203 (609)
Q Consensus 124 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 203 (609)
.++..|..++..+...|++++|...|+.++.. .|.+..++..+.. .|...|++++|+..++++.+.. +.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~-------~~~~~~~~~~A~~~~~~al~~~-p~ 75 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRAL-------CYLKMQQPEQALADCRRALELD-GQ 75 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHH-------HHHHhcCHHHHHHHHHHHHHhC-ch
Confidence 46777777888888888888888888887766 3455666666666 7778888888888888777754 44
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 037911 204 SIVSCNFLLNGLLKLNCIDQCWQVYEEMGR 233 (609)
Q Consensus 204 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 233 (609)
+...|..+..++...|++++|...|++..+
T Consensus 76 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 76 SVKAHFFLGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 566777777777777777777777777654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.32 E-value=8.2e-06 Score=71.36 Aligned_cols=126 Identities=10% Similarity=0.028 Sum_probs=80.6
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCC--c-----------HHhHHHHhhccccchhHHHHhCCHHHHHHH
Q 037911 126 SSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPH--S-----------VDVFQDLISCTEDCNWAYVKVGLIRESFKT 192 (609)
Q Consensus 126 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~-----------~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~ 192 (609)
...+..++..+...|++++|...|+++++..+..+. . ..++..+.. .|...|++++|+..
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~-------~~~~~~~~~~A~~~ 110 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLAT-------CYNKNKDYPKAIDH 110 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHH-------HHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH-------HHHHhcCHHHHHHH
Confidence 445667788888899999999999998876332221 0 144555555 67777777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 037911 193 FRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVN 260 (609)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 260 (609)
++++++.. +.+...+..+..++...|++++|...|++..+.. +.+...+..+..++...++.+++.
T Consensus 111 ~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 111 ASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 77777653 4456667777777777777777777777766532 234455555555555555544444
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.32 E-value=6.3e-06 Score=65.33 Aligned_cols=95 Identities=6% Similarity=-0.119 Sum_probs=56.8
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHH
Q 037911 128 NYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVS 207 (609)
Q Consensus 128 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 207 (609)
.+..++..+.+.|++++|+..++.+++. .|.+...+..+.. .+...|++++|+..|+++++.. +.+...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~-------~~~~~g~~~~A~~~~~~al~l~-P~~~~~ 87 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGL-------TQAENEKDGLAIIALNHARMLD-PKDIAV 87 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 3445555666666666666666666654 3445555555555 5666666666666666666543 334555
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhh
Q 037911 208 CNFLLNGLLKLNCIDQCWQVYEEMGR 233 (609)
Q Consensus 208 ~~~ll~~~~~~~~~~~a~~~~~~m~~ 233 (609)
+..+..++...|++++|...|++..+
T Consensus 88 ~~~la~~~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 88 HAALAVSHTNEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666666666554
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.30 E-value=1.1e-05 Score=70.50 Aligned_cols=133 Identities=14% Similarity=-0.011 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---------------HHHHHHHHHHHhcCCCHhHHHHHHHHHHHCC
Q 037911 451 EIYNELMESLCKCDSVADALLLKDEMVDRNIKPS---------------LSTYRALICCFCGIGRSGEAVSLMDEMLESG 515 (609)
Q Consensus 451 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 515 (609)
..+..+...+.+.|++++|+..|++..+...... ...|..+..++...|++++|+..++++++..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3455566667777777777777777765421111 2667777888888888888888888888753
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHH-HHHHHHHHcC
Q 037911 516 MLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLM-ELQKRFLRLG 585 (609)
Q Consensus 516 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~~g 585 (609)
+.+...+..+..++...|++++|.+.|++..+.. +.+...+..+..++...|+.+++. ..++.|...|
T Consensus 119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4467778888888888899999999888888763 234567777777777777777766 5566665443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=0.00038 Score=65.12 Aligned_cols=133 Identities=9% Similarity=0.016 Sum_probs=59.5
Q ss_pred hcCCHH-HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHCCCccCHHHHHHHHHH
Q 037911 322 KEGKVR-EAHQLFHRMVHRGLSP-DIVSYNTLIFAYCKEGK----------MQESKSLLYEMMGNGIYPDTFTCQIIVQG 389 (609)
Q Consensus 322 ~~~~~~-~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (609)
+.|.++ +|+.+++.+... .| +...|+.--..+...+. +++++.+++.++... +-+..+|+.-...
T Consensus 41 ~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 41 QAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 344433 566666666654 22 23333332222222221 345555555555432 2244445444444
Q ss_pred HHccC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 037911 390 YGKEG--RLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNR-PFAATSLLERIGQDGYVPSLEIYNELMES 459 (609)
Q Consensus 390 ~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 459 (609)
+.+.+ .+++++.+++++.+... -+...|+.-..++...|. ++++...+.++.... +.+...|+.....
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~l 188 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCL 188 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HhccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 44444 25555555555555442 244444444444444444 244444444443332 2344444443333
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.5e-05 Score=67.14 Aligned_cols=99 Identities=11% Similarity=0.032 Sum_probs=78.3
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCC
Q 037911 125 TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPS 204 (609)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 204 (609)
+...|..+...+...|++++|+..|+++++. .|.+..++..+.. .|.+.|++++|+..|+++++.. +.+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~-------~~~~~g~~~~A~~~~~~al~~~-p~~ 78 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAA-------AYSASGQHEKAAEDAELATVVD-PKY 78 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHH-------HHHHccCHHHHHHHHHHHHHhC-CCC
Confidence 5667777888888888888888888888876 3556777777777 7888888888888888888765 456
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 037911 205 IVSCNFLLNGLLKLNCIDQCWQVYEEMGRI 234 (609)
Q Consensus 205 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 234 (609)
...|..+..++...|++++|...|++..+.
T Consensus 79 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 79 SKAWSRLGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 777888888888888888888888887664
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.30 E-value=3.2e-05 Score=63.61 Aligned_cols=109 Identities=17% Similarity=0.068 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHH
Q 037911 484 SLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPD----SQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYN 559 (609)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 559 (609)
+...+..+...+...|++++|+..|++..+. .|+ ...+..+..++...|++++|...+++..+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 3455555666666666666666666666642 344 4556666666666777777777776666552 22345566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 037911 560 AVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMI 597 (609)
Q Consensus 560 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 597 (609)
.+..+|...|++++|.+.|++.++. .|+.......+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 139 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL--EPKNKVFQEAL 139 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--CSSCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHH
Confidence 6666677777777777777777644 44443333333
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.1e-05 Score=68.09 Aligned_cols=99 Identities=8% Similarity=-0.097 Sum_probs=73.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037911 449 SLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLIN 528 (609)
Q Consensus 449 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 528 (609)
+...+..+...+.+.|++++|+..|++.++... .+...|..+..+|...|++++|+..++++++.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 456677777778888888888888888776542 356677777778888888888888888887653 335667777888
Q ss_pred HHHccCCHHHHHHHHHHHHHc
Q 037911 529 GYCMEKDVNKAEALLGFFAKK 549 (609)
Q Consensus 529 ~~~~~g~~~~A~~~~~~~~~~ 549 (609)
+|...|++++|.+.|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 888888888888888877765
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.28 E-value=2.4e-05 Score=62.66 Aligned_cols=99 Identities=11% Similarity=-0.022 Sum_probs=63.0
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCC---
Q 037911 128 NYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPS--- 204 (609)
Q Consensus 128 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~--- 204 (609)
.+..++..+...|++++|...|+.+++..+..+.....+..+.. .|...|++++|+..|+++.+.. +.+
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~-------~~~~~~~~~~A~~~~~~~~~~~-p~~~~~ 75 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGE-------SYYATRNFQLAEAQFRDLVSRY-PTHDKA 75 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHC-TTSTTH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHH-------HHHHhccHHHHHHHHHHHHHHC-CCCccc
Confidence 34455666777777777777777777653333333345555555 6777777777777777776643 222
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 037911 205 IVSCNFLLNGLLKLNCIDQCWQVYEEMGRI 234 (609)
Q Consensus 205 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 234 (609)
..++..+..++...|++++|...|+++.+.
T Consensus 76 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 76 AGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455666666777777777777777776653
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.24 E-value=2.3e-05 Score=63.54 Aligned_cols=96 Identities=7% Similarity=-0.187 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHH
Q 037911 485 LSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNM 564 (609)
Q Consensus 485 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 564 (609)
...+..+...+...|++++|+..|+++++.. +.+...+..+..++...|++++|...++...+.. +.+...|..+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHH
Confidence 3344444444444444444444444444322 2234444444445555555555555555444432 1233444445555
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 037911 565 FAEDGDLSKLMELQKRFL 582 (609)
Q Consensus 565 ~~~~g~~~~A~~~~~~m~ 582 (609)
|...|++++|++.|++++
T Consensus 87 ~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 555555555555555544
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.4e-05 Score=61.89 Aligned_cols=89 Identities=12% Similarity=0.064 Sum_probs=50.4
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC--CHHHHHHHHHHHHHc-CC
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICP--NTHTFNILTHVFCKN-GD 255 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~l~~~~~~~-g~ 255 (609)
.+...|++++|+..|+++.+.. +.+...|..+...+...|++++|.+.|++..+.. +. +...+..+..++... |+
T Consensus 15 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~~~~~~~ 92 (112)
T 2kck_A 15 LQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADALRYIEGK 92 (112)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHHTTCSSC
T ss_pred HHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHHHHHhCC
Confidence 5566666666666666666543 3345555555566666666666666666655532 22 345555555555555 55
Q ss_pred hHHHHHHHHHHHHc
Q 037911 256 VDKVNGFLEKIEEE 269 (609)
Q Consensus 256 ~~~a~~~~~~~~~~ 269 (609)
+++|.+.+++....
T Consensus 93 ~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 93 EVEAEIAEARAKLE 106 (112)
T ss_dssp SHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhhc
Confidence 55555555555544
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.22 E-value=1.2e-05 Score=64.47 Aligned_cols=90 Identities=11% Similarity=0.161 Sum_probs=55.8
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC--CCC----HHHHHHHHHHHHH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGI--CPN----THTFNILTHVFCK 252 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~----~~~~~~l~~~~~~ 252 (609)
.+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...+++...... .++ ..++..+...+..
T Consensus 13 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 91 (131)
T 1elr_A 13 DAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFK 91 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHH
Confidence 5667777777777777776643 34566666666667777777777777766654320 111 4455556666666
Q ss_pred cCChHHHHHHHHHHHHc
Q 037911 253 NGDVDKVNGFLEKIEEE 269 (609)
Q Consensus 253 ~g~~~~a~~~~~~~~~~ 269 (609)
.|++++|.+.+++..+.
T Consensus 92 ~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 92 EEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHh
Confidence 66666666666666554
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.20 E-value=1.4e-05 Score=63.35 Aligned_cols=93 Identities=10% Similarity=-0.052 Sum_probs=59.0
Q ss_pred HHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhc
Q 037911 489 RALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAED 568 (609)
Q Consensus 489 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 568 (609)
..+...+.+.|++++|+..++++++.. +.+...+..+..++...|++++|+..+++..+.. +-+...+..+..+|...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 334455566677777777777666532 3355666666667777777777777777666552 22345666666777777
Q ss_pred CCHHHHHHHHHHHHH
Q 037911 569 GDLSKLMELQKRFLR 583 (609)
Q Consensus 569 g~~~~A~~~~~~m~~ 583 (609)
|++++|++.+++.++
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 777777777777663
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.19 E-value=6.4e-05 Score=74.85 Aligned_cols=199 Identities=10% Similarity=-0.019 Sum_probs=109.1
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHhhCCCCC--------------cHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHH
Q 037911 132 IVHILAWNNKFSFAMKMLCELVELVKDCPH--------------SVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTL 197 (609)
Q Consensus 132 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 197 (609)
-++.+...|++++|.+.|..+++..+.... ....+..++. .|...|++++|.+.+.++.
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~-------~y~~~~~~~~a~~~~~~~~ 82 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQ-------LYVTMGAKDKLREFIPHST 82 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHH-------HHHHHTCHHHHHHHHHHTH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHH-------HHHHCCCHHHHHHHHHHHH
Confidence 356677788888888888888875222111 1123445555 7888888888888887776
Q ss_pred hCCC-CCCH----HHHHHHHHHHHhcCChHHHHHHHHHHhh----CCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 037911 198 DVGF-QPSI----VSCNFLLNGLLKLNCIDQCWQVYEEMGR----IGICPN-THTFNILTHVFCKNGDVDKVNGFLEKIE 267 (609)
Q Consensus 198 ~~~~-~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 267 (609)
+.-- .++. .+.+.+...+...|+.++|.+++++... .+..+. ..++..+...+...|++++|..++++..
T Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 162 (434)
T 4b4t_Q 83 EYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLL 162 (434)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHH
Confidence 5210 1111 1222223333445677777777666532 111222 3455666666777777777777766654
Q ss_pred Hc--CC--CC-CHHhHHHHHHHHHhcCCHhHHHHHHHHHhhC----CccCC--HhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037911 268 EE--GF--DP-DLVTYNTLISSYCKKGRLNDAFYLYRIMYRR----NVLPD--LVTYTTLMNGLCKEGKVREAHQLFHRM 336 (609)
Q Consensus 268 ~~--~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m 336 (609)
.. +. .+ ...++..++..|...|++++|..++++.... +..+. ...+..+...+...|++++|...|.+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 163 REFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 42 10 11 1335666666666666666666666665431 11111 123444445555566666666655554
Q ss_pred H
Q 037911 337 V 337 (609)
Q Consensus 337 ~ 337 (609)
.
T Consensus 243 ~ 243 (434)
T 4b4t_Q 243 F 243 (434)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.17 E-value=7.5e-05 Score=61.30 Aligned_cols=99 Identities=17% Similarity=0.044 Sum_probs=66.3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhH
Q 037911 203 PSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPN----THTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTY 278 (609)
Q Consensus 203 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 278 (609)
.+...+..+...+...|++++|...|++..+. .|+ ...+..+...+...|++++|...+++..+.. +.+...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 45566667777777777777777777777663 344 4566666667777777777777777766653 2245566
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHhhC
Q 037911 279 NTLISSYCKKGRLNDAFYLYRIMYRR 304 (609)
Q Consensus 279 ~~li~~~~~~g~~~~a~~~~~~~~~~ 304 (609)
..+..++...|++++|...|++..+.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 66666777777777777777766654
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.17 E-value=7.4e-05 Score=74.38 Aligned_cols=196 Identities=7% Similarity=-0.063 Sum_probs=141.2
Q ss_pred hcCCChhHHHHHHHHhhhcCCCCCCH---------------HhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcH--
Q 037911 101 RCQSDSVSALTFFNWVKNDLEIKPTS---------------SNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSV-- 163 (609)
Q Consensus 101 ~~~~~~~~A~~~f~~~~~~~~~~~~~---------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-- 163 (609)
...|++++|++.|..+.+......+. .++..++.+|...|++++|.+.+..+.+..+..+...
T Consensus 15 ~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 94 (434)
T 4b4t_Q 15 VNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTV 94 (434)
T ss_dssp HHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHH
Confidence 34579999999999998754333221 2478899999999999999999999887644332211
Q ss_pred -HhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhC--C
Q 037911 164 -DVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLD----VGFQP-SIVSCNFLLNGLLKLNCIDQCWQVYEEMGRI--G 235 (609)
Q Consensus 164 -~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~----~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~ 235 (609)
.+...+.. .+...|++++|+.+++...+ .+..+ -..++..+...+...|++++|..++++.... +
T Consensus 95 ~~~~~~l~~-------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 167 (434)
T 4b4t_Q 95 KVLKTLIEK-------FEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKK 167 (434)
T ss_dssp HHHHHHHHH-------HCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHH-------HHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHh
Confidence 12222222 45567899999999988764 22222 2457788999999999999999999987542 1
Q ss_pred C---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCC--HHhHHHHHHHHHhcCCHhHHHHHHHHHhh
Q 037911 236 I---CPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEE----GFDPD--LVTYNTLISSYCKKGRLNDAFYLYRIMYR 303 (609)
Q Consensus 236 ~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 303 (609)
. +....++..++..|...|++++|..++++.... +.++. ...+..+...+...|++++|...|.+..+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 168 LDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp SSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1 112467888999999999999999999987643 11111 24566677788889999999998877764
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.14 E-value=3e-05 Score=64.80 Aligned_cols=100 Identities=15% Similarity=0.094 Sum_probs=63.4
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCc---HHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCC--
Q 037911 126 SSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHS---VDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVG-- 200 (609)
Q Consensus 126 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-- 200 (609)
..++..+...+...|++++|...++++++..+..+.. ...+..+.. .|...|++++|++.+++..+..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~-------~~~~~g~~~~A~~~~~~a~~~~~~ 81 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGN-------AYIFLGEFETASEYYKKTLLLARQ 81 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHHHHHH
Confidence 4567788888899999999999999888763221111 124444555 7888888888888888776521
Q ss_pred --CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 037911 201 --FQP-SIVSCNFLLNGLLKLNCIDQCWQVYEEMG 232 (609)
Q Consensus 201 --~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 232 (609)
.++ ....+..+...+...|++++|.+.+++..
T Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 82 LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 000 13345555556666666666666665543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.10 E-value=6.4e-05 Score=60.09 Aligned_cols=86 Identities=13% Similarity=0.046 Sum_probs=37.5
Q ss_pred HhcCCCHhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC----hhcHHHHHHHHHh
Q 037911 495 FCGIGRSGEAVSLMDEMLESGMLPDS---QICRVLINGYCMEKDVNKAEALLGFFAKKFQIYD----TESYNAVFNMFAE 567 (609)
Q Consensus 495 ~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~ 567 (609)
+...|++++|...|+++.+.. +.+. ..+..+..++.+.|++++|...++.+.+.. |+ ...+..+..++..
T Consensus 12 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~~~~~ 88 (129)
T 2xev_A 12 ALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGLSQYG 88 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHH
Confidence 334444444444444444321 1111 233444444444555555555554444432 11 2334444444555
Q ss_pred cCCHHHHHHHHHHHHH
Q 037911 568 DGDLSKLMELQKRFLR 583 (609)
Q Consensus 568 ~g~~~~A~~~~~~m~~ 583 (609)
.|++++|.+.|+++++
T Consensus 89 ~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 89 EGKNTEAQQTLQQVAT 104 (129)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.09 E-value=8e-06 Score=64.31 Aligned_cols=86 Identities=19% Similarity=0.117 Sum_probs=45.7
Q ss_pred CCCHhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHH
Q 037911 498 IGRSGEAVSLMDEMLESG--MLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLM 575 (609)
Q Consensus 498 ~g~~~~A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 575 (609)
.|++++|+..|+++++.+ -+.+...+..+..+|...|++++|...+++..+.. +-+...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 355566666666665432 01223445556666666666666666666666552 223455555666666666666666
Q ss_pred HHHHHHHHc
Q 037911 576 ELQKRFLRL 584 (609)
Q Consensus 576 ~~~~~m~~~ 584 (609)
+.+++.++.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.07 E-value=3.7e-06 Score=84.59 Aligned_cols=87 Identities=13% Similarity=0.171 Sum_probs=42.3
Q ss_pred HHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 037911 136 LAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGL 215 (609)
Q Consensus 136 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 215 (609)
+.+.|++++|.+.++++++. .|.+...+..+.. +|.+.|++++|++.++++.+.. +.+..+|..+..++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~-------~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~ 84 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSL-------AYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 84 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHH-------HHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34445555555555555543 2333444444444 4555555555555555555442 23344444455555
Q ss_pred HhcCChHHHHHHHHHHhh
Q 037911 216 LKLNCIDQCWQVYEEMGR 233 (609)
Q Consensus 216 ~~~~~~~~a~~~~~~m~~ 233 (609)
...|++++|.+.|++..+
T Consensus 85 ~~~g~~~eA~~~~~~al~ 102 (477)
T 1wao_1 85 MALGKFRAALRDYETVVK 102 (477)
T ss_dssp HHHTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555555443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.06 E-value=5.8e-05 Score=63.36 Aligned_cols=105 Identities=10% Similarity=0.073 Sum_probs=78.0
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCC---------------CCCcHHhHHHHhhccccchhHHHHhCCHHHHH
Q 037911 126 SSNYCLIVHILAWNNKFSFAMKMLCELVELVKD---------------CPHSVDVFQDLISCTEDCNWAYVKVGLIRESF 190 (609)
Q Consensus 126 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~ 190 (609)
...+...+..+.+.|++++|+..|.+++...+. .|....++..+.. +|.+.|++++|+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~-------~~~~~~~~~~A~ 83 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQ-------CYLNIGDLHEAE 83 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHH-------HHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHH-------HHHhcCcHHHHH
Confidence 456777888899999999999999998875110 1233456666666 788888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH
Q 037911 191 KTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNT 240 (609)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 240 (609)
..++++++.+ +.+..+|..+..++...|++++|...|++..+. .|+.
T Consensus 84 ~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~ 130 (162)
T 3rkv_A 84 ETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAA 130 (162)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGG
T ss_pred HHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCC
Confidence 8888888765 556777888888888888888888888887763 3543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.06 E-value=4.1e-05 Score=76.64 Aligned_cols=87 Identities=8% Similarity=0.011 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHH
Q 037911 486 STYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMF 565 (609)
Q Consensus 486 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 565 (609)
..|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|++++|...|+++.+.. +.+...+..+..++
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~ 395 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQ 395 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344444455555555555555555555432 2234445555555555555555555555555431 11224444455555
Q ss_pred HhcCCHHHH
Q 037911 566 AEDGDLSKL 574 (609)
Q Consensus 566 ~~~g~~~~A 574 (609)
.+.|++++|
T Consensus 396 ~~~~~~~~a 404 (457)
T 1kt0_A 396 KKAKEHNER 404 (457)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555554444
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.06 E-value=4.4e-05 Score=64.10 Aligned_cols=68 Identities=16% Similarity=0.034 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 037911 521 QICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNL 591 (609)
Q Consensus 521 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 591 (609)
..|..+..+|.+.|++++|...++..++.. +.+...|..+..+|...|++++|++.|++.++. .|+..
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~~ 131 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAAA 131 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCCH
Confidence 455566666666666666666666666542 223455666666666666666666666666644 45443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.05 E-value=4e-05 Score=63.99 Aligned_cols=96 Identities=13% Similarity=0.023 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCC-CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CC----HH
Q 037911 207 SCNFLLNGLLKLNCIDQCWQVYEEMGRIGIC-PN----THTFNILTHVFCKNGDVDKVNGFLEKIEEEGFD-PD----LV 276 (609)
Q Consensus 207 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~ 276 (609)
++..+...+...|++++|...+++..+.... .+ ..++..+...+...|++++|...+++..+.... .+ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4455555555666666666666555432100 01 124444555555555555555555554432000 00 22
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHh
Q 037911 277 TYNTLISSYCKKGRLNDAFYLYRIMY 302 (609)
Q Consensus 277 ~~~~li~~~~~~g~~~~a~~~~~~~~ 302 (609)
.+..+...+...|++++|.+.+++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34444445555555555555554443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.04 E-value=6.2e-05 Score=75.30 Aligned_cols=145 Identities=10% Similarity=0.015 Sum_probs=91.6
Q ss_pred ChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCC------------cHHhHHHHhhc
Q 037911 105 DSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPH------------SVDVFQDLISC 172 (609)
Q Consensus 105 ~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------~~~~~~~l~~~ 172 (609)
+++.|+..|+.+... .+.....|..+...+.+.|++++|+..|+++++..+..+. ...++..+..
T Consensus 249 ~~~~A~~~~~~~~~~--~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~- 325 (457)
T 1kt0_A 249 SFEKAKESWEMDTKE--KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM- 325 (457)
T ss_dssp EEECCCCGGGSCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH-
T ss_pred hcccCcchhhcCHHH--HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH-
Confidence 344455444443321 0124667888999999999999999999999987433211 0344555555
Q ss_pred cccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 037911 173 TEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCK 252 (609)
Q Consensus 173 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 252 (609)
+|.+.|++++|+..|+++++.. +.+..+|..+..+|...|++++|+..|++..+.. +-+...+..+..++.+
T Consensus 326 ------~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~ 397 (457)
T 1kt0_A 326 ------CYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKK 397 (457)
T ss_dssp ------HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHH
T ss_pred ------HHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 6777777777777777777654 4456667777777777777777777777766642 2234555666666666
Q ss_pred cCChHHHH
Q 037911 253 NGDVDKVN 260 (609)
Q Consensus 253 ~g~~~~a~ 260 (609)
.++.+++.
T Consensus 398 ~~~~~~a~ 405 (457)
T 1kt0_A 398 AKEHNERD 405 (457)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655554
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.03 E-value=9.4e-05 Score=60.44 Aligned_cols=100 Identities=11% Similarity=-0.041 Sum_probs=73.6
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCC----cH-----HhHHHHhhccccchhHHHHhCCHHHHHHHHHHH
Q 037911 126 SSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPH----SV-----DVFQDLISCTEDCNWAYVKVGLIRESFKTFRKT 196 (609)
Q Consensus 126 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~-----~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~ 196 (609)
...+......+...|++++|+..|+++++..+..|. +. ..|..+.. ++.+.|++++|+..+++.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~-------al~~Lgr~~eAl~~~~kA 83 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAE-------ALAGLRSFDEALHSADKA 83 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHH-------HHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHH-------HHHHCCCHHHHHHHHHHH
Confidence 445667788889999999999999999988554321 22 26666666 899999999999999999
Q ss_pred HhC-------CCCCCHHHH----HHHHHHHHhcCChHHHHHHHHHHhh
Q 037911 197 LDV-------GFQPSIVSC----NFLLNGLLKLNCIDQCWQVYEEMGR 233 (609)
Q Consensus 197 ~~~-------~~~~~~~~~----~~ll~~~~~~~~~~~a~~~~~~m~~ 233 (609)
++. . +.+...| .....++...|++++|+..|++..+
T Consensus 84 L~l~n~~~e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 84 LHYFNRRGELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHCCTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhhhccccCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 875 3 2344456 6666677777777777777776654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.01 E-value=6.7e-05 Score=72.58 Aligned_cols=124 Identities=13% Similarity=0.097 Sum_probs=70.0
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCC-------------CCCcHHhHHHHhhccccchhHHHHhCCHHHHHHH
Q 037911 126 SSNYCLIVHILAWNNKFSFAMKMLCELVELVKD-------------CPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKT 192 (609)
Q Consensus 126 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-------------~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~ 192 (609)
...|..+...+.+.|++++|+..|+++++..+. .|....++..+.. +|.+.|++++|++.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~-------~~~~~g~~~~A~~~ 295 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGA-------CKLKMSDWQGAVDS 295 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHH-------HHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHH-------HHHhccCHHHHHHH
Confidence 446788899999999999999999999873110 1122334444444 55555666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHH
Q 037911 193 FRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDK 258 (609)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (609)
++++++.. +.+..+|..+..+|...|++++|.+.|++..+.. +.+...+..+..++...++.++
T Consensus 296 ~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~ 359 (370)
T 1ihg_A 296 CLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKD 359 (370)
T ss_dssp HHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 65555543 3345555555555555555555555555554431 1233344444444444444333
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.01 E-value=1.1e-05 Score=63.59 Aligned_cols=87 Identities=10% Similarity=-0.014 Sum_probs=50.9
Q ss_pred CCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 037911 139 NNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKL 218 (609)
Q Consensus 139 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 218 (609)
.|++++|+..|+++++.....|....++..+.. .|...|++++|+..|+++++.. +.+...+..+..++...
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~-------~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 74 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGS-------TFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNL 74 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHc
Confidence 456666666666666431112344555555555 6667777777777777776654 34456666666666666
Q ss_pred CChHHHHHHHHHHhh
Q 037911 219 NCIDQCWQVYEEMGR 233 (609)
Q Consensus 219 ~~~~~a~~~~~~m~~ 233 (609)
|++++|...|++..+
T Consensus 75 g~~~~A~~~~~~al~ 89 (117)
T 3k9i_A 75 GRYEQGVELLLKIIA 89 (117)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 777777776666654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.97 E-value=2.6e-05 Score=78.48 Aligned_cols=118 Identities=8% Similarity=0.006 Sum_probs=93.8
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDK 258 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (609)
.+.+.|++++|++.|+++++.. +.+..+|..+..++.+.|++++|.+.+++..+.. +.+...+..+..+|...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 6788999999999999999864 5568899999999999999999999999998863 4467888889999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHH--HHhcCCHhHHHHHHH
Q 037911 259 VNGFLEKIEEEGFDPDLVTYNTLISS--YCKKGRLNDAFYLYR 299 (609)
Q Consensus 259 a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~ 299 (609)
|.+.+++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 93 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999988763 2234455555555 788899999999888
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.95 E-value=2.6e-05 Score=74.57 Aligned_cols=100 Identities=12% Similarity=0.017 Sum_probs=52.6
Q ss_pred HHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHH-H
Q 037911 487 TYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNM-F 565 (609)
Q Consensus 487 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~ 565 (609)
.|..+..+|.+.|++++|+..++++++.. +.+...+..+..+|...|++++|...|+++.+.. +-+...+..+... .
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~ 309 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAE 309 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
Confidence 67788888999999999999999998753 3467788899999999999999999999887652 2234555555555 3
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCh
Q 037911 566 AEDGDLSKLMELQKRFLRLGFAPNN 590 (609)
Q Consensus 566 ~~~g~~~~A~~~~~~m~~~g~~p~~ 590 (609)
...+..+++.++|++|... .|+.
T Consensus 310 ~~~~~~~~a~~~~~~~l~~--~p~~ 332 (338)
T 2if4_A 310 QEKALYQKQKEMYKGIFKG--KDEG 332 (338)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHhhCC--CCCC
Confidence 3456777888899988843 4543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00074 Score=69.15 Aligned_cols=171 Identities=9% Similarity=0.032 Sum_probs=127.0
Q ss_pred ChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCC----------HHHHHHHHHHHHhCCCCCCHHHHHH
Q 037911 141 KFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGL----------IRESFKTFRKTLDVGFQPSIVSCNF 210 (609)
Q Consensus 141 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~ 210 (609)
..++|.+.+++++.. .|....+|..-.. .+...|+ ++++++.++++.+.. +.+..+|+.
T Consensus 44 ~~eeal~~~~~~l~~---nP~~~taW~~R~~-------~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~h 112 (567)
T 1dce_A 44 LDESVLELTSQILGA---NPDFATLWNCRRE-------VLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHH 112 (567)
T ss_dssp CSHHHHHHHHHHHHH---CTTCHHHHHHHHH-------HHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CCHHHHHHHHHHHHH---CchhHHHHHHHHH-------HHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 345678888888876 4555666655544 5556666 899999999999865 678889999
Q ss_pred HHHHHHhcC--ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 037911 211 LLNGLLKLN--CIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNG-DVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCK 287 (609)
Q Consensus 211 ll~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 287 (609)
-..++.+.+ +++++++.++++.+.. +-|..+|+.-..++.+.| .++++.+.++++.+... -|..+|+.....+.+
T Consensus 113 R~w~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll~~ 190 (567)
T 1dce_A 113 RCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQ 190 (567)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHHHh
Confidence 888888888 6799999999998864 457788888888888888 88999999998887753 367788877776665
Q ss_pred c--------------CCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCC
Q 037911 288 K--------------GRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGK 325 (609)
Q Consensus 288 ~--------------g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 325 (609)
. +.++++++.+++.....+. |...|..+-..+.+.++
T Consensus 191 l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 191 LHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp HSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCC
T ss_pred hcccccccccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCC
Confidence 3 4467777777777765544 56666666655555555
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.91 E-value=9.7e-05 Score=71.44 Aligned_cols=90 Identities=16% Similarity=0.002 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHH
Q 037911 485 LSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNM 564 (609)
Q Consensus 485 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 564 (609)
...|..+..+|.+.|++++|+..++++++.. +.+...+..+..+|...|++++|.+.|+++.+.. +.+...+..+..+
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~ 350 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKV 350 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4567777777788888888888888887643 3356677778888888888888888888877662 2244566666666
Q ss_pred HHhcCCHHHHHH
Q 037911 565 FAEDGDLSKLME 576 (609)
Q Consensus 565 ~~~~g~~~~A~~ 576 (609)
+...++.+++.+
T Consensus 351 ~~~~~~~~~a~k 362 (370)
T 1ihg_A 351 KQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 766666666543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.91 E-value=7.1e-05 Score=74.73 Aligned_cols=126 Identities=8% Similarity=-0.094 Sum_probs=79.8
Q ss_pred HHHhCCChhHHHHHHHHHHHhhC-----CCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHh-----CC--CC
Q 037911 135 ILAWNNKFSFAMKMLCELVELVK-----DCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLD-----VG--FQ 202 (609)
Q Consensus 135 ~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~-----~~--~~ 202 (609)
.+..+|++++|+.+++++++... .+|....+++.+.. .|...|++++|..+++++++ .| .+
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~-------~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp 390 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASE-------VLSYLQAYEEASHYARRMVDGYMKLYHHNNA 390 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-------HHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 45678999999999999987633 23445667888888 89999999999999988764 22 12
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhh-----CCC-CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 037911 203 PSIVSCNFLLNGLLKLNCIDQCWQVYEEMGR-----IGI-CP-NTHTFNILTHVFCKNGDVDKVNGFLEKIE 267 (609)
Q Consensus 203 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-----~~~-~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 267 (609)
....+++.|...|...|++++|..++++..+ .|- .| ...+.+.+..++...+.+++|+.++..+.
T Consensus 391 ~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 391 QLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2234566677777777777777776666542 120 01 12223334444444455555555555544
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.89 E-value=0.0005 Score=55.65 Aligned_cols=112 Identities=14% Similarity=0.020 Sum_probs=78.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHH
Q 037911 464 DSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCM----EKDVNKA 539 (609)
Q Consensus 464 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A 539 (609)
+++++|+++|++..+.|. |+.. +...|...+.+++|++.|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 456777777777777662 3333 5566666667777777777777654 56666777777776 6778888
Q ss_pred HHHHHHHHHcCCCCChhcHHHHHHHHHh----cCCHHHHHHHHHHHHHcCC
Q 037911 540 EALLGFFAKKFQIYDTESYNAVFNMFAE----DGDLSKLMELQKRFLRLGF 586 (609)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~ 586 (609)
.+.|++..+.+ ++..+..|...|.. .+++++|.++|++..+.|.
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 88887777653 45667777777777 7788888888888777653
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.86 E-value=5.5e-05 Score=75.56 Aligned_cols=127 Identities=9% Similarity=0.006 Sum_probs=100.1
Q ss_pred HhcCCChhHHHHHHHHhhhc----CCCCC--CHHhHHHHHHHHHhCCChhHHHHHHHHHHHh-----hCCCCCcHHhHHH
Q 037911 100 LRCQSDSVSALTFFNWVKND----LEIKP--TSSNYCLIVHILAWNNKFSFAMKMLCELVEL-----VKDCPHSVDVFQD 168 (609)
Q Consensus 100 ~~~~~~~~~A~~~f~~~~~~----~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~ 168 (609)
.+.+|++++|+.+++.+... .|..| ...+++.|+.+|...|+|++|..+++++++. ++..|.....+..
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 35689999999999888752 23222 5778999999999999999999999998865 2344566677888
Q ss_pred HhhccccchhHHHHhCCHHHHHHHHHHHHh-----CC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 037911 169 LISCTEDCNWAYVKVGLIRESFKTFRKTLD-----VG--FQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGR 233 (609)
Q Consensus 169 l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~-----~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 233 (609)
|.. .|...|++++|+.+++++++ .| .+....+.+.+-.++...+.+++|..+|.++.+
T Consensus 399 La~-------~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGL-------TNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHH-------HHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-------HHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888 99999999999999999875 34 222344566677788889999999999999865
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.85 E-value=5.8e-05 Score=72.18 Aligned_cols=149 Identities=11% Similarity=0.038 Sum_probs=72.3
Q ss_pred HHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCH
Q 037911 126 SSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSI 205 (609)
Q Consensus 126 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 205 (609)
...+..+...+.+.|++++|...|++++... |.+. . +...|+.+++...+. .
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~---p~~~-~--------------~~~~~~~~~~~~~l~----------~ 230 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM---GDDF-M--------------FQLYGKYQDMALAVK----------N 230 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS---CHHH-H--------------HTCCHHHHHHHHHHH----------T
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh---ccch-h--------------hhhcccHHHHHHHHH----------H
Confidence 4567778888899999999999999998762 1111 1 112223333332221 1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH-
Q 037911 206 VSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISS- 284 (609)
Q Consensus 206 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~- 284 (609)
..|+.+..++.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|...|++..+.. +-+...+..+...
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~ 308 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALA 308 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 256666667777777777777777766542 3355666677777777777777777777766542 1123344444433
Q ss_pred HHhcCCHhHHHHHHHHHhhC
Q 037911 285 YCKKGRLNDAFYLYRIMYRR 304 (609)
Q Consensus 285 ~~~~g~~~~a~~~~~~~~~~ 304 (609)
....+..+.+..+|+.|...
T Consensus 309 ~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 309 EQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHhhCC
Confidence 23345566666777766654
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00084 Score=54.29 Aligned_cols=111 Identities=10% Similarity=0.012 Sum_probs=68.2
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCChHHH
Q 037911 184 GLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCK----NGDVDKV 259 (609)
Q Consensus 184 g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~a 259 (609)
+++++|++.|++..+.| .+... |...|...+.+++|.+.|++..+.| +...+..|...|.. .++.++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 45677777777777766 23322 5555555566666777777766643 45566666666665 5666666
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHh----cCCHhHHHHHHHHHhhCC
Q 037911 260 NGFLEKIEEEGFDPDLVTYNTLISSYCK----KGRLNDAFYLYRIMYRRN 305 (609)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~ 305 (609)
.+.|++..+.| +...+..|...|.. .++.++|++.|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 66666666654 45555556666665 566666666666665554
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.74 E-value=3.4e-05 Score=59.79 Aligned_cols=94 Identities=10% Similarity=-0.024 Sum_probs=63.9
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCC
Q 037911 125 TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPS 204 (609)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 204 (609)
+...|..++..+...|++++|...++++++. .|.+...+..+.. .|...|++++|++.|+++++.. +.+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~-------~~~~~g~~~~A~~~~~~al~~~-p~~ 71 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA---QPQNPVGYSNKAM-------ALIKLGEYTQAIQMCQQGLRYT-STA 71 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHTSC-SST
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHH-------HHHHhcCHHHHHHHHHHHHHhC-CCc
Confidence 4566777788888888888888888888876 4456667777776 7888888888888888887754 222
Q ss_pred ------HHHHHHHHHHHHhcCChHHHHHHHH
Q 037911 205 ------IVSCNFLLNGLLKLNCIDQCWQVYE 229 (609)
Q Consensus 205 ------~~~~~~ll~~~~~~~~~~~a~~~~~ 229 (609)
...+..+..++...|+.+.|.+.++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 72 EHVAIRSKLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred cHHHHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence 4445555555555555555444333
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00049 Score=56.18 Aligned_cols=24 Identities=13% Similarity=0.074 Sum_probs=11.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHH
Q 037911 349 NTLIFAYCKEGKMQESKSLLYEMM 372 (609)
Q Consensus 349 ~~li~~~~~~g~~~~A~~~~~~~~ 372 (609)
.....++...|++++|+..|++.+
T Consensus 106 ~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 106 YSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhHHHHHHHCCCHHHHHHHHHHHH
Confidence 444444445555555555554443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=0.0014 Score=67.00 Aligned_cols=171 Identities=8% Similarity=0.017 Sum_probs=121.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 037911 185 LIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNC----------IDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNG 254 (609)
Q Consensus 185 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 254 (609)
..++|++.++++++.. +.+..+|+.--.++...|+ ++++++.++++.+.. +-+..+|+.-..++.+.|
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 4467789999988865 5567778877777766666 888888888887753 446677777777777888
Q ss_pred --ChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC-CHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhc--------
Q 037911 255 --DVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKG-RLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKE-------- 323 (609)
Q Consensus 255 --~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~-------- 323 (609)
+++++++.++++.+.. +-+..+|+.-...+.+.| .++++++.++++.+.++. |...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 6688888888888875 336777887777777777 788888888888877665 777777766666553
Q ss_pred ------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 037911 324 ------GKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGK 360 (609)
Q Consensus 324 ------~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 360 (609)
+.++++.+.+++..... +-|...|..+-..+.+.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred cccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 34567777777766542 2245566655555555554
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00015 Score=59.19 Aligned_cols=99 Identities=11% Similarity=0.060 Sum_probs=74.8
Q ss_pred HhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCC----------HHHHHHHHHHHHhCCCCCCHH
Q 037911 137 AWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGL----------IRESFKTFRKTLDVGFQPSIV 206 (609)
Q Consensus 137 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~ 206 (609)
.+.+.|++|++.++..++. .|.+...+..+.. ++...|+ +++|+..|++.++.+ +.+..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l---~P~~aea~~n~G~-------~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~ 81 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS---NPLDADNLTRWGG-------VLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDE 81 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHH-------HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHhHHHHHHHHHHHHHHH---CCCCHHHHHHHHH-------HHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHH
Confidence 4556788999999999987 5677888887777 6777765 469999999999875 45777
Q ss_pred HHHHHHHHHHhcC-----------ChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 037911 207 SCNFLLNGLLKLN-----------CIDQCWQVYEEMGRIGICPNTHTFNILTH 248 (609)
Q Consensus 207 ~~~~ll~~~~~~~-----------~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 248 (609)
+|..+..+|...| ++++|++.|++..+ +.|+...|...+.
T Consensus 82 A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~ 132 (158)
T 1zu2_A 82 AVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 8888888888764 78888888888777 4576665544443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0006 Score=50.15 Aligned_cols=82 Identities=18% Similarity=0.246 Sum_probs=51.3
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCC
Q 037911 125 TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPS 204 (609)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 204 (609)
+...+..+...+...|++++|...++++++. .|.+...+..+.. .|.+.|++++|+..|++..+.. +.+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~-------~~~~~~~~~~A~~~~~~a~~~~-p~~ 76 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAWYNLGN-------AYYKQGDYDEAIEYYQKALELD-PNN 76 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCCCHHHHHHHHH-------HHHHHhhHHHHHHHHHHHHhcC-CCC
Confidence 3456666677777777777777777777765 3345555666665 6777777777777777776643 334
Q ss_pred HHHHHHHHHHHHh
Q 037911 205 IVSCNFLLNGLLK 217 (609)
Q Consensus 205 ~~~~~~ll~~~~~ 217 (609)
...+..+..++..
T Consensus 77 ~~~~~~l~~~~~~ 89 (91)
T 1na3_A 77 AEAKQNLGNAKQK 89 (91)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 5555555544443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.58 E-value=4.7e-05 Score=58.91 Aligned_cols=63 Identities=10% Similarity=-0.061 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 037911 486 STYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKK 549 (609)
Q Consensus 486 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 549 (609)
..+..+...+...|++++|+..|+++++.. +.+...+..+..++.+.|++++|.+.+++..+.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 344455555555555666665555555432 234455555555566666666666666555543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00057 Score=53.19 Aligned_cols=79 Identities=10% Similarity=-0.080 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 037911 468 DALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFA 547 (609)
Q Consensus 468 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 547 (609)
+|+..|++..+... .+...+..+...+...|++++|+..++++++.. +.+...+..+..++...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34445555544321 234445555555555555555555555555432 2234445555555555555555555555544
Q ss_pred H
Q 037911 548 K 548 (609)
Q Consensus 548 ~ 548 (609)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00062 Score=52.95 Aligned_cols=79 Identities=10% Similarity=-0.011 Sum_probs=62.0
Q ss_pred HHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHH
Q 037911 108 SALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIR 187 (609)
Q Consensus 108 ~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~ 187 (609)
.|+..|+.+... .+.+...+..++.++...|++++|+..++++++. .|.....+..+.. .|...|+++
T Consensus 3 ~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~-------~~~~~g~~~ 70 (115)
T 2kat_A 3 AITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF---DPTYSVAWKWLGK-------TLQGQGDRA 70 (115)
T ss_dssp CHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH-------HHHHHTCHH
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH---CCCcHHHHHHHHH-------HHHHcCCHH
Confidence 467777777753 2446788888888888999999999999888876 3456677777777 788889999
Q ss_pred HHHHHHHHHHh
Q 037911 188 ESFKTFRKTLD 198 (609)
Q Consensus 188 ~A~~~~~~~~~ 198 (609)
+|+..|++..+
T Consensus 71 ~A~~~~~~al~ 81 (115)
T 2kat_A 71 GARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988888876
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00029 Score=57.38 Aligned_cols=98 Identities=14% Similarity=0.161 Sum_probs=71.7
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh----------HHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCI----------DQCWQVYEEMGRIGICPNTHTFNILTH 248 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~----------~~a~~~~~~m~~~~~~~~~~~~~~l~~ 248 (609)
...+.+.+++|++.+++.++.. +.+...|+.+..++...+++ ++|+..|++..+.. +-+...|..+..
T Consensus 11 ~~~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ 88 (158)
T 1zu2_A 11 EFDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGN 88 (158)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 3457778899999999999876 66888999888888888765 48888888887743 234567777888
Q ss_pred HHHHcC-----------ChHHHHHHHHHHHHcCCCCCHHhHHH
Q 037911 249 VFCKNG-----------DVDKVNGFLEKIEEEGFDPDLVTYNT 280 (609)
Q Consensus 249 ~~~~~g-----------~~~~a~~~~~~~~~~~~~~~~~~~~~ 280 (609)
+|...| ++++|++.|++..+. .|+...|..
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~ 129 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLK 129 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 877664 677777777777765 455444433
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0018 Score=47.54 Aligned_cols=70 Identities=20% Similarity=0.205 Sum_probs=37.7
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVF 250 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 250 (609)
.+...|++++|+..|++..+.. +.+...+..+..++...|++++|...|++..+.. +.+...+..+..++
T Consensus 18 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 18 AYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 5566666666666666665543 3345555555566666666666666666555432 22334444444433
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0015 Score=49.23 Aligned_cols=66 Identities=17% Similarity=0.220 Sum_probs=56.9
Q ss_pred CCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHh
Q 037911 123 KPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLD 198 (609)
Q Consensus 123 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 198 (609)
+.++..+..++.++...|++++|+..|+++++. .|.....+..+.. +|...|++++|++.|++.++
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~-------~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVET---DPDYVGTYYHLGK-------LYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCTHHHHHHHH-------HHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHh
Confidence 347888999999999999999999999999987 4556677888887 89999999999999998876
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0014 Score=49.47 Aligned_cols=62 Identities=16% Similarity=-0.025 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 037911 485 LSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFA 547 (609)
Q Consensus 485 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 547 (609)
...+..+..+|...|++++|+..|+++++.. +.+...|..+..+|...|++++|.+.+++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444555555555555555555555555432 2233445555555555555555555555444
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0025 Score=62.42 Aligned_cols=88 Identities=7% Similarity=-0.143 Sum_probs=63.4
Q ss_pred hCCChhHHHHHHHHHHHhhC-----CCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHh-----CC--CCCCH
Q 037911 138 WNNKFSFAMKMLCELVELVK-----DCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLD-----VG--FQPSI 205 (609)
Q Consensus 138 ~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~-----~~--~~~~~ 205 (609)
..|++++|..++++.++... .+|....+++.+.. .|...|++++|+.+++++++ .| .+...
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~-------~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a 382 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMG-------VCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVA 382 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHH-------HHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 45789999999999987632 23445567788888 99999999999999998874 22 11223
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHh
Q 037911 206 VSCNFLLNGLLKLNCIDQCWQVYEEMG 232 (609)
Q Consensus 206 ~~~~~ll~~~~~~~~~~~a~~~~~~m~ 232 (609)
.+++.|...|...|++++|..+|++..
T Consensus 383 ~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 383 SMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 356667777777777777777666654
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0032 Score=61.76 Aligned_cols=90 Identities=9% Similarity=0.055 Sum_probs=73.0
Q ss_pred cCCChhHHHHHHHHhhhc----CCCCC--CHHhHHHHHHHHHhCCChhHHHHHHHHHHHh-----hCCCCCcHHhHHHHh
Q 037911 102 CQSDSVSALTFFNWVKND----LEIKP--TSSNYCLIVHILAWNNKFSFAMKMLCELVEL-----VKDCPHSVDVFQDLI 170 (609)
Q Consensus 102 ~~~~~~~A~~~f~~~~~~----~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~ 170 (609)
..|++++|+.+++.+... .|..| ...+++.++.+|..+|+|++|+.+++++++. ++..|.....++.+.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457899999999988752 22222 4678999999999999999999999999865 234456667788888
Q ss_pred hccccchhHHHHhCCHHHHHHHHHHHHh
Q 037911 171 SCTEDCNWAYVKVGLIRESFKTFRKTLD 198 (609)
Q Consensus 171 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 198 (609)
. .|...|++++|+.+++++.+
T Consensus 390 ~-------~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 R-------LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp H-------HHHHTTCHHHHHHHHHHHHH
T ss_pred H-------HHHhccCHHHHHHHHHHHHH
Confidence 8 99999999999999998875
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.77 E-value=0.012 Score=47.24 Aligned_cols=91 Identities=13% Similarity=-0.016 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHHcCCCC--ChhcHHHHHHHHHhcCCHHHHHH
Q 037911 502 GEAVSLMDEMLESGMLPDSQICRVLINGYCMEK---DVNKAEALLGFFAKKFQIY--DTESYNAVFNMFAEDGDLSKLME 576 (609)
Q Consensus 502 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~ 576 (609)
..+.+-|.+..+.+ .++..+...+.+++++.+ ++++++.+++...+.. .| +...+-.+.-++.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 34445555554444 356666666666666666 4556666666666553 12 23444555556666666666666
Q ss_pred HHHHHHHcCCCCChhhHHHH
Q 037911 577 LQKRFLRLGFAPNNLTCKYM 596 (609)
Q Consensus 577 ~~~~m~~~g~~p~~~~~~~l 596 (609)
.++.+++. .|+..--..+
T Consensus 93 y~~~lL~i--eP~n~QA~~L 110 (152)
T 1pc2_A 93 YVRGLLQT--EPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHH--CTTCHHHHHH
T ss_pred HHHHHHhc--CCCCHHHHHH
Confidence 66666644 5554443333
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.018 Score=42.39 Aligned_cols=80 Identities=11% Similarity=0.016 Sum_probs=45.4
Q ss_pred CCHHHHHHHHHHHHccCC---HHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 037911 518 PDSQICRVLINGYCMEKD---VNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCK 594 (609)
Q Consensus 518 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 594 (609)
.+...+..+..++...++ .++|..++++..+.. +-++.....+...+.+.|++++|+..|+++++. .|+.....
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~--~p~~~~~~ 80 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS--NDPNLDRV 80 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC--CCTTCCHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCccHH
Confidence 455556666666554433 566777777666552 223455666666677777777777777777644 34433333
Q ss_pred HHHHHH
Q 037911 595 YMIHSL 600 (609)
Q Consensus 595 ~ll~~~ 600 (609)
.+..+.
T Consensus 81 ~i~~~I 86 (93)
T 3bee_A 81 TIIESI 86 (93)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 343333
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.034 Score=52.23 Aligned_cols=63 Identities=16% Similarity=0.145 Sum_probs=32.7
Q ss_pred CHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037911 274 DLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVH 338 (609)
Q Consensus 274 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 338 (609)
+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|++...
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 44444444444444455555555555555543 3444444455555555555555555555554
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0075 Score=59.17 Aligned_cols=94 Identities=13% Similarity=0.033 Sum_probs=66.3
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHhhC-----CCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHh-----CC-
Q 037911 132 IVHILAWNNKFSFAMKMLCELVELVK-----DCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLD-----VG- 200 (609)
Q Consensus 132 l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~-----~~- 200 (609)
.+..+..+|++++|+.+++++++... .+|....+++.+.. .|...|++++|+.+++++++ .|
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~-------~y~~~g~~~eA~~~~~~~L~i~~~~lg~ 365 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMD-------ACINLGLLEEALFYGTRTMEPYRIFFPG 365 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHH-------HHHHHTCHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHH-------HHHhhccHHHHHHHHHHHHHhHHHHcCC
Confidence 35566788999999999999986532 22344566777777 89999999999999998864 22
Q ss_pred -CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 037911 201 -FQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMG 232 (609)
Q Consensus 201 -~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 232 (609)
.+....+++.|...|...|++++|..++++..
T Consensus 366 ~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 366 SHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 11223356666666777777777766666654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.69 E-value=0.12 Score=55.79 Aligned_cols=161 Identities=12% Similarity=0.118 Sum_probs=93.8
Q ss_pred hHHHHHHHHhcCCChhHHHH-HHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHh
Q 037911 92 AHEISRVLLRCQSDSVSALT-FFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLI 170 (609)
Q Consensus 92 ~~~~~~~l~~~~~~~~~A~~-~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 170 (609)
...+.-......++++.|.+ ++..+ ++......++..+.+.|.+++|.++.++... -|
T Consensus 601 ~~~~~~~~~~~~~~~~~a~~~~l~~i-------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~----------~f---- 659 (814)
T 3mkq_A 601 LEVLEFQTLTLRGEIEEAIENVLPNV-------EGKDSLTKIARFLEGQEYYEEALNISPDQDQ----------KF---- 659 (814)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHTGGGC-------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHHH----------HH----
T ss_pred cHHHHHhHHHHhCCHHHHHHHHHhcC-------CchHHHHHHHHHHHhCCChHHheecCCCcch----------he----
Confidence 33333333344567777765 44111 1122336677777778887777765432211 11
Q ss_pred hccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 037911 171 SCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVF 250 (609)
Q Consensus 171 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 250 (609)
. .....|++++|+++.+.+ .+...|..+...+.+.++++.|.+.|.++.. |..+...+
T Consensus 660 ~-------~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~ 717 (814)
T 3mkq_A 660 E-------LALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLH 717 (814)
T ss_dssp H-------HHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHH
T ss_pred e-------hhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHH
Confidence 1 345678888888776532 4567888888888888888888888887754 33455555
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHH
Q 037911 251 CKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIM 301 (609)
Q Consensus 251 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 301 (609)
...|+.+...++.+.....| -++....+|.+.|++++|++++.++
T Consensus 718 ~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 718 SSFNNKEGLVTLAKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 56677666666555555443 1233334455556666666555443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.1 Score=56.31 Aligned_cols=46 Identities=11% Similarity=0.116 Sum_probs=26.1
Q ss_pred HHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 037911 356 CKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQ 407 (609)
Q Consensus 356 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 407 (609)
...|++++|.++.+.+ .+...|..+...+.+.++++.|.+.|.++.
T Consensus 663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 3456666666554322 245556666666666666666666665543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.61 E-value=0.087 Score=49.51 Aligned_cols=46 Identities=11% Similarity=0.043 Sum_probs=29.4
Q ss_pred CCCHHhHHHHHHHHH--hC---CChhHHHHHHHHHHHhhCCCCCcHHhHHHHhh
Q 037911 123 KPTSSNYCLIVHILA--WN---NKFSFAMKMLCELVELVKDCPHSVDVFQDLIS 171 (609)
Q Consensus 123 ~~~~~~~~~l~~~~~--~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 171 (609)
+.+..+|...+++.. .. ..+.+|+.+|+++++. .|.....+..+.-
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~ 241 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKAL 241 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHH
Confidence 446666666665543 33 3357899999999987 4555666665443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.025 Score=41.98 Aligned_cols=59 Identities=17% Similarity=0.314 Sum_probs=39.8
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHH-hHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCC
Q 037911 132 IVHILAWNNKFSFAMKMLCELVELVKDCPHSVD-VFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVG 200 (609)
Q Consensus 132 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 200 (609)
.+..+...|++++|...++++++. .|.+.. .+..+.. .|...|++++|++.|+++++..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~lg~-------~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT---EPVGKDEAYYLMGN-------AYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH---CSSTHHHHHHHHHH-------HHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHhcC
Confidence 455666677777777777777765 344555 6666666 6777777777777777777654
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.031 Score=42.15 Aligned_cols=70 Identities=11% Similarity=0.116 Sum_probs=59.4
Q ss_pred CCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCC----CCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhC
Q 037911 124 PTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKD----CPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDV 199 (609)
Q Consensus 124 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 199 (609)
-++..+..|+..+.+.|+|..|...|+.+++.... ......++..+.. +|.+.|++++|+..++++.+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~-------~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSY-------AVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHH-------HHHHccCHHHHHHHHHHHHhc
Confidence 46777889999999999999999999999987422 2356778888888 899999999999999999985
Q ss_pred C
Q 037911 200 G 200 (609)
Q Consensus 200 ~ 200 (609)
.
T Consensus 76 ~ 76 (104)
T 2v5f_A 76 D 76 (104)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.011 Score=58.02 Aligned_cols=91 Identities=10% Similarity=-0.017 Sum_probs=73.1
Q ss_pred hcCCChhHHHHHHHHhhhc----CCCCC--CHHhHHHHHHHHHhCCChhHHHHHHHHHHHh-----hCCCCCcHHhHHHH
Q 037911 101 RCQSDSVSALTFFNWVKND----LEIKP--TSSNYCLIVHILAWNNKFSFAMKMLCELVEL-----VKDCPHSVDVFQDL 169 (609)
Q Consensus 101 ~~~~~~~~A~~~f~~~~~~----~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l 169 (609)
..++++++|+.+++.+... .|..| ...+++.++.+|...|+|++|+.+++++++. ++..|.....+..+
T Consensus 298 ~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL 377 (429)
T 3qwp_A 298 KAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV 377 (429)
T ss_dssp HHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred HhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence 3568999999999998753 22222 4678899999999999999999999998865 23445566678888
Q ss_pred hhccccchhHHHHhCCHHHHHHHHHHHHh
Q 037911 170 ISCTEDCNWAYVKVGLIRESFKTFRKTLD 198 (609)
Q Consensus 170 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 198 (609)
.. .|...|++++|+.+++++.+
T Consensus 378 a~-------~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 378 GK-------LQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HH-------HHHHTTCHHHHHHHHHHHHH
T ss_pred HH-------HHHhcCCHHHHHHHHHHHHH
Confidence 88 99999999999999998865
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.051 Score=39.86 Aligned_cols=68 Identities=15% Similarity=0.086 Sum_probs=54.4
Q ss_pred CCCHHhHHHHHHHHHhCCC---hhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhC
Q 037911 123 KPTSSNYCLIVHILAWNNK---FSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDV 199 (609)
Q Consensus 123 ~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 199 (609)
+.++..+..++.++...++ .++|..+++++++. .|.+......+.. .+.+.|++++|+..|+++.+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~---dp~~~rA~~~lg~-------~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL---EPYNEAALSLIAN-------DHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH---CTTCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH---CcCCHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHhh
Confidence 4577888888888865544 68999999999987 5567777777777 888999999999999999886
Q ss_pred C
Q 037911 200 G 200 (609)
Q Consensus 200 ~ 200 (609)
.
T Consensus 73 ~ 73 (93)
T 3bee_A 73 N 73 (93)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.4 Score=39.58 Aligned_cols=127 Identities=12% Similarity=0.185 Sum_probs=86.9
Q ss_pred HHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHH
Q 037911 180 YVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKV 259 (609)
Q Consensus 180 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a 259 (609)
....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.++.
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 45789999999887765 4577899999999999999999999988654 33455556777888887
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037911 260 NGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRM 336 (609)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m 336 (609)
.++-+.....| -++.....+.-.|+++++.++|.+... .|.. .-.....|..+.|.++.+++
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA------~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---LPLA------YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HHHH------HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hHHH------HHHHHHcCcHHHHHHHHHHh
Confidence 77766666554 245555566677888888888755432 2211 11122355666777776655
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.24 Score=44.58 Aligned_cols=85 Identities=18% Similarity=0.175 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHHHcCCCCC---HHhHHHHHHHHHh-----cCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhc-CCH
Q 037911 256 VDKVNGFLEKIEEEGFDPD---LVTYNTLISSYCK-----KGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKE-GKV 326 (609)
Q Consensus 256 ~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~-----~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~-~~~ 326 (609)
...|..++++..+. .|+ ...|..+...|.. -|+.++|.+.|++.++.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 34566666666655 344 4456666666666 367777777777776654322355555566666663 667
Q ss_pred HHHHHHHHHHHHCCCC
Q 037911 327 REAHQLFHRMVHRGLS 342 (609)
Q Consensus 327 ~~a~~~~~~m~~~g~~ 342 (609)
+++.+.+++.......
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 7777777777665433
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.03 E-value=0.04 Score=41.57 Aligned_cols=65 Identities=12% Similarity=-0.031 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhcCCCHhHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 037911 485 LSTYRALICCFCGIGRSGEAVSLMDEMLESG------MLPDSQICRVLINGYCMEKDVNKAEALLGFFAKK 549 (609)
Q Consensus 485 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 549 (609)
..-+..+...+...|+++.|...|+++.+.. -.+...++..|..++.+.|++++|...++++.+.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3344455555555566666666555555420 1123444555555555555555555555555543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.051 Score=40.23 Aligned_cols=58 Identities=17% Similarity=0.084 Sum_probs=40.7
Q ss_pred HHHHHhcCCCHhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 037911 491 LICCFCGIGRSGEAVSLMDEMLESGMLPDSQ-ICRVLINGYCMEKDVNKAEALLGFFAKK 549 (609)
Q Consensus 491 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 549 (609)
....+...|++++|+..++++++.. +.+.. .+..+..++...|++++|.+.|++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3445666777888888887777643 33455 6777777777778888888887777765
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.36 Score=39.88 Aligned_cols=130 Identities=7% Similarity=0.047 Sum_probs=80.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCH
Q 037911 422 IVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRS 501 (609)
Q Consensus 422 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 501 (609)
.......|+++.|.++.+.+ .+...|..|.....+.|+++-|++.|....+ +..+.-.|.-.|+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence 34455677777777776654 4677788888888888888888888876643 23344445556777
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHH
Q 037911 502 GEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRF 581 (609)
Q Consensus 502 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 581 (609)
++-.++-+.....| + ++.....+...|+++++.+++.+.-+ |..-+-.....|-.+.|.++.+++
T Consensus 77 e~L~kla~iA~~~g---~---~n~af~~~l~lGdv~~~i~lL~~~~r---------~~eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 77 NKLSKMQNIAQTRE---D---FGSMLLNTFYNNSTKERSSIFAEGGS---------LPLAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHHTT---C---HHHHHHHHHHHTCHHHHHHHHHHTTC---------HHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCc---c---HHHHHHHHHHcCCHHHHHHHHHHCCC---------hHHHHHHHHHcCcHHHHHHHHHHh
Confidence 76666666665544 1 33444556667888888888753321 111122222356667777777665
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.69 E-value=0.53 Score=36.43 Aligned_cols=84 Identities=12% Similarity=-0.051 Sum_probs=51.9
Q ss_pred CCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHH
Q 037911 498 IGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMEL 577 (609)
Q Consensus 498 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 577 (609)
.|+.......+-.+ .-++..+...++.+..+|+-+.-.+++..+.. ...|++...-.+..+|.+.|+..+|.++
T Consensus 74 C~NlKrVi~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eL 147 (172)
T 1wy6_A 74 CQNLKSVVECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTL 147 (172)
T ss_dssp CSCTHHHHHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhcHHHHHHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHH
Confidence 34444444444443 12445556666677777777777777766543 2256666677777777777777777777
Q ss_pred HHHHHHcCCC
Q 037911 578 QKRFLRLGFA 587 (609)
Q Consensus 578 ~~~m~~~g~~ 587 (609)
++++.++|++
T Consensus 148 l~~AC~kG~k 157 (172)
T 1wy6_A 148 LIEACKKGEK 157 (172)
T ss_dssp HHHHHHTTCH
T ss_pred HHHHHHhhhH
Confidence 7777777653
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.61 E-value=0.57 Score=36.26 Aligned_cols=140 Identities=16% Similarity=0.163 Sum_probs=72.5
Q ss_pred HHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHH
Q 037911 180 YVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKV 259 (609)
Q Consensus 180 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a 259 (609)
+.-.|.+++..++..+... ..+..-||-++.-....-+-+-..++++..-+. .| ...+|++...
T Consensus 17 ~ildG~v~qGveii~k~~~---ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD----------is~C~NlKrV 80 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSV 80 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHH
T ss_pred HHHhhhHHHHHHHHHHHcC---CCCccccceeeeecchhhchhHHHHHHHHHhhh---cC----------cHhhhcHHHH
Confidence 3445666777777766665 345556666665555555555555555554321 11 1123333333
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037911 260 NGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHR 339 (609)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 339 (609)
..-+-.+- .+....+..++....+|+-++-.+++.++.. +.+|+....-.+..+|.+.|+..+|.+++.+..+.
T Consensus 81 i~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 81 VECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 33332221 1334445555555666666666666666433 22345555555666666666666666666666665
Q ss_pred CC
Q 037911 340 GL 341 (609)
Q Consensus 340 g~ 341 (609)
|+
T Consensus 155 G~ 156 (172)
T 1wy6_A 155 GE 156 (172)
T ss_dssp TC
T ss_pred hh
Confidence 54
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.2 Score=45.05 Aligned_cols=94 Identities=14% Similarity=0.133 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc-CCH
Q 037911 221 IDQCWQVYEEMGRIGICPN---THTFNILTHVFCKN-----GDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKK-GRL 291 (609)
Q Consensus 221 ~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~ 291 (609)
...|...+++..+ +.|+ ...|..+...|.+. |+.++|.+.|++..+.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 4677888888877 4566 56888899999984 99999999999999885322477788888888884 999
Q ss_pred hHHHHHHHHHhhCCcc--CCHhhHHHH
Q 037911 292 NDAFYLYRIMYRRNVL--PDLVTYTTL 316 (609)
Q Consensus 292 ~~a~~~~~~~~~~~~~--p~~~~~~~l 316 (609)
+++.+.+++.....+. |+....+.+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 9999999999998776 665444433
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.42 E-value=0.14 Score=41.06 Aligned_cols=82 Identities=13% Similarity=0.040 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHhhCCCCC--CHHHHHHHHHHHHHcCChHHHH
Q 037911 186 IRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLN---CIDQCWQVYEEMGRIGICP--NTHTFNILTHVFCKNGDVDKVN 260 (609)
Q Consensus 186 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~m~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~ 260 (609)
...+.+.|.+..+.| +++..+...+..++++.+ ++++++.++++..+.+ .| +...+-.|.-++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 345566666666655 467777777888888877 5668888888887753 23 3455566777788888888888
Q ss_pred HHHHHHHHc
Q 037911 261 GFLEKIEEE 269 (609)
Q Consensus 261 ~~~~~~~~~ 269 (609)
+.++.+.+.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 888888876
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.14 E-value=0.15 Score=40.45 Aligned_cols=65 Identities=9% Similarity=0.111 Sum_probs=37.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 037911 533 EKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMIHS 599 (609)
Q Consensus 533 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 599 (609)
.+|.++|.++|+.+++.+... ...|-....--.++|+.+.|.+++.+.+..+-+| ...+.+.|..
T Consensus 73 i~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~n 137 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALRN 137 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHHh
Confidence 366777777777776543232 4455555555566777777777777777554333 2333444433
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.08 E-value=0.12 Score=39.99 Aligned_cols=87 Identities=9% Similarity=-0.094 Sum_probs=51.6
Q ss_pred HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH---HHHHHHHHHHcCCCC--ChhcHHHHHHHHHhcCCHHHHH
Q 037911 501 SGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNK---AEALLGFFAKKFQIY--DTESYNAVFNMFAEDGDLSKLM 575 (609)
Q Consensus 501 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~ 575 (609)
...+.+-|.+....| .++..+-..+.+++++..+... ++.+++.+.+.+ .| .....-.+.-++.+.|++++|.
T Consensus 17 l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 334444555444434 3666666667777777665554 666666666542 12 2234455556677777777777
Q ss_pred HHHHHHHHcCCCCChh
Q 037911 576 ELQKRFLRLGFAPNNL 591 (609)
Q Consensus 576 ~~~~~m~~~g~~p~~~ 591 (609)
+.++.+++. .|+..
T Consensus 95 ~~~~~lL~~--eP~n~ 108 (126)
T 1nzn_A 95 KYVRGLLQT--EPQNN 108 (126)
T ss_dssp HHHHHHHHH--CTTCH
T ss_pred HHHHHHHHh--CCCCH
Confidence 777777754 56543
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=94.73 E-value=5.4 Score=42.62 Aligned_cols=152 Identities=14% Similarity=0.148 Sum_probs=76.2
Q ss_pred HHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhh---C--------CCCCc
Q 037911 94 EISRVLLRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELV---K--------DCPHS 162 (609)
Q Consensus 94 ~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~--------~~~~~ 162 (609)
.+.-.+.-.-|+++.|++|--.+....+.....+--..++.-+. ..|.+..... . -.+.-
T Consensus 74 lvaSkvyy~Lg~~~~al~yaL~aG~~fd~~~~seYv~tiis~ci---------d~y~~~~~~~~~~~~~~~~~~~id~rL 144 (963)
T 4ady_A 74 LIASKVYYNLGEYESAVKYALAAKDRFDIDEKSQFVETIVSKSI---------EMYVQEASKQYTKDEQFYTKDIIDPKL 144 (963)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHGGGSCTTSCSHHHHHHHHHHH---------HHHHHHHHHHHHHCTTGGGSSCSCHHH
T ss_pred HHHHHHheeccchHHHHHHHHhCCCcCCCCCcchHHHHHHHHHH---------HHHHHHHhhccccccccccccccCHHH
Confidence 34444445558999999998887765555444333334443222 2222221110 0 01112
Q ss_pred HHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCC---------C-----CCHHHHHHHHHHHHhcCCh-------
Q 037911 163 VDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGF---------Q-----PSIVSCNFLLNGLLKLNCI------- 221 (609)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~---------~-----~~~~~~~~ll~~~~~~~~~------- 221 (609)
..+...++. .+.+.|...+|+.+.-+..+.+. . .-...+..++.+....-..
T Consensus 145 ~~Lv~~iv~-------~cl~hnae~~AvdLalE~erLD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~p~~fr~~v 217 (963)
T 4ady_A 145 TSIFERMIE-------KCLKASELKLALGIALEGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSI 217 (963)
T ss_dssp HHHHHHHHH-------HHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHH-------HHHhCCCHHHHHHHHHHHhhHHHHHHHHHhhccccccccHHHHHHHHHHHhhccCCChHHHHHH
Confidence 234455555 56677777777666544332110 0 0022334444433322222
Q ss_pred -HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037911 222 -DQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEE 268 (609)
Q Consensus 222 -~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 268 (609)
+.+.++|.++. .| -|..++.+..+.++.+.+.++|.++.+
T Consensus 218 Lr~l~~Iy~k~~----~~---dy~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 218 LRKSFDFLMNMP----NC---DYLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp HHHHHHHHHHSS----SC---CHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCC----ch---hHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 22333333321 12 355567777888999999999998764
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.65 E-value=1.5 Score=34.88 Aligned_cols=33 Identities=9% Similarity=0.053 Sum_probs=27.0
Q ss_pred CCCHHhHHHHHHHHHhCCCh------hHHHHHHHHHHHh
Q 037911 123 KPTSSNYCLIVHILAWNNKF------SFAMKMLCELVEL 155 (609)
Q Consensus 123 ~~~~~~~~~l~~~~~~~~~~------~~A~~~~~~~~~~ 155 (609)
+.|.++|...+..+-+.|+. ++.+++|+.++..
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~ 48 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA 48 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc
Confidence 44788888888888888888 7888888888876
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=93.54 E-value=1.7 Score=48.68 Aligned_cols=45 Identities=9% Similarity=0.112 Sum_probs=36.7
Q ss_pred CCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHH
Q 037911 103 QSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELV 153 (609)
Q Consensus 103 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 153 (609)
.+.++.|.++..|... ++.+...++.++...|++++|...|.++.
T Consensus 825 ~~~~~~~~~l~~~~~~------~~~~~yl~g~~~L~~ge~~~A~~~F~kaa 869 (1139)
T 4fhn_B 825 FKQYNACMQLIGWLNS------DPIAVYLKALIYLKSKEAVKAVRCFKTTS 869 (1139)
T ss_dssp HSCTTHHHHHHHHSCC------CHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred hhhHHHHHHHhhhccC------CcHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 3577888888888753 56667888999999999999999997764
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.30 E-value=0.48 Score=36.53 Aligned_cols=84 Identities=15% Similarity=0.105 Sum_probs=55.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCCHHH
Q 037911 464 DSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGE---AVSLMDEMLESGMLP--DSQICRVLINGYCMEKDVNK 538 (609)
Q Consensus 464 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~ 538 (609)
.....+.+-|.+....|. ++..+--.+..++.+..+..+ ++.++++..+.+ .| .....-.|.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 344455555655555444 666666667777777766655 778888877643 23 23344556777888888888
Q ss_pred HHHHHHHHHHc
Q 037911 539 AEALLGFFAKK 549 (609)
Q Consensus 539 A~~~~~~~~~~ 549 (609)
|.+.++.+.+.
T Consensus 93 A~~~~~~lL~~ 103 (126)
T 1nzn_A 93 ALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88888888876
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=92.97 E-value=9e-06 Score=77.46 Aligned_cols=226 Identities=11% Similarity=0.156 Sum_probs=120.8
Q ss_pred CcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH
Q 037911 161 HSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNT 240 (609)
Q Consensus 161 ~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 240 (609)
..+.+|..+.+ ++.+.|++.+|++.|-+. .|+..|..++.+..+.|.+++-...+...++..-.|
T Consensus 52 n~p~VWs~Lgk-------AqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~-- 116 (624)
T 3lvg_A 52 NEPAVWSQLAK-------AQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES-- 116 (624)
T ss_dssp CCCCCSSSHHH-------HTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--
T ss_pred CCccHHHHHHH-------HHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--
Confidence 34455666666 677777787777766433 344467777888888888888888777666543333
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHH
Q 037911 241 HTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGL 320 (609)
Q Consensus 241 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~ 320 (609)
..=+.|+-+|++.+++.+.++++. .||..-...+.+-|...|.++.|.-+|..+.. |.-|...+
T Consensus 117 ~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstL 180 (624)
T 3lvg_A 117 YVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTL 180 (624)
T ss_dssp TTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSS
T ss_pred ccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHH
Confidence 333467778888888665544432 35666667777777777777777666644322 22222233
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHH
Q 037911 321 CKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSAL 400 (609)
Q Consensus 321 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 400 (609)
.+.|++..|.+.-++ .-+..||..+-.+|...+++.-|.-.--.++-. +| -...++..|-..|.+++.+
T Consensus 181 V~L~~yq~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELI 249 (624)
T 3lvg_A 181 VHLGEYQAAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELI 249 (624)
T ss_dssp SSCSGGGSSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTST
T ss_pred HHHHHHHHHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHH
Confidence 334444333321111 123445555555555555554444333222211 11 1122334445555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 037911 401 NLVVELQRFGVSISRDIYDYLIVALCQDN 429 (609)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 429 (609)
.+++...... ......|+-+.-.|++-.
T Consensus 250 sLlEaglglE-rAHmGmFTELaILYsKY~ 277 (624)
T 3lvg_A 250 TMLEAALGLE-RAHMGMFTELAILYSKFK 277 (624)
T ss_dssp TTHHHHTTST-TCCHHHHHHHHHHHHSSC
T ss_pred HHHHHHhCCC-chhHHHHHHHHHHHHhcC
Confidence 5555444321 234445555555555443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=92.58 E-value=1.4 Score=34.09 Aligned_cols=79 Identities=13% Similarity=-0.041 Sum_probs=54.1
Q ss_pred CCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh
Q 037911 516 MLPDSQICRVLINGYCMEKD---VNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLT 592 (609)
Q Consensus 516 ~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 592 (609)
-.|+..+--.+.+++++..+ ..+++.+++.+.+.+..-....+-.+.-++.+.|++++|.+..+.+++ +.|+..-
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~Q 113 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQ 113 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCHH
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCHH
Confidence 35677777777888887765 446777887777664211235566677788888888888888888884 4777654
Q ss_pred HHHH
Q 037911 593 CKYM 596 (609)
Q Consensus 593 ~~~l 596 (609)
-..|
T Consensus 114 A~~L 117 (134)
T 3o48_A 114 VGAL 117 (134)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=92.49 E-value=3.2 Score=32.65 Aligned_cols=74 Identities=14% Similarity=-0.039 Sum_probs=43.3
Q ss_pred CCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh
Q 037911 517 LPDSQICRVLINGYCMEKD---VNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLT 592 (609)
Q Consensus 517 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 592 (609)
.|+..+-..+.+++++..+ ..+++.+++.+.+.+..-.....-.+.-++.+.|++++|.++.+.+++. .|+..-
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHH
Confidence 4566666666666666654 3356666666665422112244455556677777777777777777744 565433
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=92.28 E-value=2.9 Score=40.19 Aligned_cols=66 Identities=9% Similarity=0.048 Sum_probs=38.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-----cCCCCCHH
Q 037911 210 FLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEE-----EGFDPDLV 276 (609)
Q Consensus 210 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~ 276 (609)
.++..+...|+..+|...+..+.... +.+...+..+|.++.+.|+..+|++.|+.+.+ .|+.|...
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 34555556666666666666655432 34555666666666666666666666665433 25555544
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=91.90 E-value=1.5e-05 Score=76.07 Aligned_cols=264 Identities=15% Similarity=0.150 Sum_probs=132.5
Q ss_pred HHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037911 275 LVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFA 354 (609)
Q Consensus 275 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 354 (609)
+..|..|..+....+++.+|++-|-+. -|...|..++.+..+.|.+++-.+++....+. ..+...=+.|+.+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHH
Confidence 345566666666666666555443211 14455666666666666666666666554443 2233334456666
Q ss_pred HHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 037911 355 YCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAA 434 (609)
Q Consensus 355 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 434 (609)
|++.++..+..+++ -.||..-...+.+-|...|.++.|.-+|..+.. |..+...+.+.|++..|
T Consensus 126 yAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~A 189 (624)
T 3lvg_A 126 LAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAA 189 (624)
T ss_dssp HHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGSS
T ss_pred HHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHHH
Confidence 66666655433332 124555555566666666666666555543322 22233333444443333
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHC
Q 037911 435 TSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLES 514 (609)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 514 (609)
.+.-++ ..++.+|..+-.+|...+.+.-|...--.++-. | .....++..|-..|.+++-+.+++.....
T Consensus 190 VdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---a--deL~elv~~YE~~G~f~ELIsLlEaglgl 258 (624)
T 3lvg_A 190 VDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---A--DELEELINYYQDRGYFEELITMLEAALGL 258 (624)
T ss_dssp TTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---S--SCCSGGGSSSSTTCCCTTSTTTHHHHTTS
T ss_pred HHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---H--HHHHHHHHHHHhCCCHHHHHHHHHHHhCC
Confidence 322111 234456666666666666666554443333311 1 11223445566667777777777666632
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-------ChhcHHHHHHHHHhcCCHHHHH
Q 037911 515 GMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIY-------DTESYNAVFNMFAEDGDLSKLM 575 (609)
Q Consensus 515 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~A~ 575 (609)
. .....+|+-|.-.|++- +.++-.+.++.....-..| ....|..++-.|.+-.+++.|.
T Consensus 259 E-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 259 E-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp T-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred C-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 1 34555666666666654 3333333333222111111 2234666666777767776654
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.71 E-value=11 Score=36.97 Aligned_cols=192 Identities=15% Similarity=0.117 Sum_probs=97.0
Q ss_pred CChhHHHHHHHHHHHhh---CCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHh-CCCCCCHHH--HHHHHH
Q 037911 140 NKFSFAMKMLCELVELV---KDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLD-VGFQPSIVS--CNFLLN 213 (609)
Q Consensus 140 ~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~--~~~ll~ 213 (609)
|++++|.+.+-.+.+.. .+.+....+...++. .+...|+++...+.+..+.+ +|..+...+ -+.++.
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~-------l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~ 102 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVD-------LLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVME 102 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHH-------HHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHH-------HHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45566666554444331 223445566667777 77888888888777766554 232222211 111222
Q ss_pred HHHhcCChHH--HHHHHHHHhh--CC-CCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCCC---HHhHHH
Q 037911 214 GLLKLNCIDQ--CWQVYEEMGR--IG-ICP---NTHTFNILTHVFCKNGDVDKVNGFLEKIEEE--GFDPD---LVTYNT 280 (609)
Q Consensus 214 ~~~~~~~~~~--a~~~~~~m~~--~~-~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~---~~~~~~ 280 (609)
.+......+. -..+.+.... .| +-. .......|...+...|++.+|.+++..+... |.... ...+..
T Consensus 103 ~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~ 182 (445)
T 4b4t_P 103 YLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILE 182 (445)
T ss_dssp HHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHH
T ss_pred HHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 2222232221 1111111110 01 111 1122345667777777777777777776543 21111 234555
Q ss_pred HHHHHHhcCCHhHHHHHHHHHhh----CCccCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037911 281 LISSYCKKGRLNDAFYLYRIMYR----RNVLPD--LVTYTTLMNGLCKEGKVREAHQLFHRMVH 338 (609)
Q Consensus 281 li~~~~~~g~~~~a~~~~~~~~~----~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 338 (609)
.++.|...+++..|..+++++.. ....|+ ...+...+..+...+++.+|.+.|.++.+
T Consensus 183 q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 183 QMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 66777777777777777776532 212222 22345555666666777777666666543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.44 E-value=11 Score=36.78 Aligned_cols=93 Identities=16% Similarity=0.134 Sum_probs=48.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHH----CCCccCH--HHH
Q 037911 315 TLMNGLCKEGKVREAHQLFHRMVHR--GLSPD---IVSYNTLIFAYCKEGKMQESKSLLYEMMG----NGIYPDT--FTC 383 (609)
Q Consensus 315 ~ll~~~~~~~~~~~a~~~~~~m~~~--g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~--~~~ 383 (609)
.|...+...|++.+|.+++.++... |.... ...+...+..|...+++..|..++.++.. ....|+. .-+
T Consensus 142 ~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~ 221 (445)
T 4b4t_P 142 DLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYY 221 (445)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHH
Confidence 4555566666666666666665432 21111 23444555666666777666666665432 1112221 234
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHH
Q 037911 384 QIIVQGYGKEGRLLSALNLVVELQ 407 (609)
Q Consensus 384 ~~l~~~~~~~~~~~~A~~~~~~~~ 407 (609)
...+..+...+++.+|...|.++.
T Consensus 222 ~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 222 NLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHH
Confidence 445555566666666666665553
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.81 E-value=0.92 Score=47.34 Aligned_cols=52 Identities=13% Similarity=0.023 Sum_probs=34.2
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCC-hhcHHHHHHHHHhcCCHHHHHHHHHHH
Q 037911 528 NGYCMEKDVNKAEALLGFFAKKFQIYD-TESYNAVFNMFAEDGDLSKLMELQKRF 581 (609)
Q Consensus 528 ~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m 581 (609)
.-|...|+++-|+++.++.+.. .|+ ..+|..|..+|...|+++.|+-.+..|
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3445567777777777776655 443 467777777777777777777666665
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=90.34 E-value=1.9 Score=41.37 Aligned_cols=122 Identities=10% Similarity=-0.007 Sum_probs=77.3
Q ss_pred CCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHH-HHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHH
Q 037911 103 QSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFA-MKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYV 181 (609)
Q Consensus 103 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 181 (609)
.+++..|...++.+.....-.+=+... ...|-.+ ...+++.. ..+...++. .+.
T Consensus 128 ~~~~~~a~~~l~~Al~L~rG~~L~~~~---------~~~w~~~~r~~l~~~~---------~~a~~~~~~-------~~l 182 (388)
T 2ff4_A 128 AGRFEQASRHLSAALREWRGPVLDDLR---------DFQFVEPFATALVEDK---------VLAHTAKAE-------AEI 182 (388)
T ss_dssp TTCHHHHHHHHHHHHTTCCSSTTGGGT---------TSTTHHHHHHHHHHHH---------HHHHHHHHH-------HHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCCC---------chhHHHHHHHHHHHHH---------HHHHHHHHH-------HHH
Confidence 478889999998888643322211110 0111111 12222222 223444555 677
Q ss_pred HhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh-----CCCCCCHHHHHHHHHHH
Q 037911 182 KVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGR-----IGICPNTHTFNILTHVF 250 (609)
Q Consensus 182 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~~~~~l~~~~ 250 (609)
..|++++|+..++.+.... +.+...|..+|.++.+.|+..+|++.|+...+ .|+.|+..+-...-..+
T Consensus 183 ~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~il 255 (388)
T 2ff4_A 183 ACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERIL 255 (388)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 8888888888888887754 78888888888888888888888888887643 48888877654443333
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=90.14 E-value=4.2 Score=29.61 Aligned_cols=63 Identities=17% Similarity=0.198 Sum_probs=48.0
Q ss_pred CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHH
Q 037911 500 RSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFN 563 (609)
Q Consensus 500 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 563 (609)
+.-+..+-++.+....+.|++.+..+.+++|.+.+++..|.++|+.++.+-.. ...+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~-~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP-HKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-CTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC-chhhHHHHHH
Confidence 55567777777777788899999999999999999999999999888766422 2445766654
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=89.84 E-value=4.4 Score=29.48 Aligned_cols=73 Identities=10% Similarity=0.082 Sum_probs=58.2
Q ss_pred HHHHccC-CHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHh
Q 037911 528 NGYCMEK-DVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMIHSLW 601 (609)
Q Consensus 528 ~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 601 (609)
..+-+.. |.-+..+-++.+......|++.+..+.+++|.+.+++.-|+++++-.+.+ ..+...+|..+++.+.
T Consensus 17 ~~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqElk 90 (109)
T 1v54_E 17 TYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQELR 90 (109)
T ss_dssp HHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHHH
T ss_pred HHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHHHh
Confidence 3333444 66678888888888888999999999999999999999999999999866 3344567888887654
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=89.40 E-value=13 Score=34.11 Aligned_cols=109 Identities=9% Similarity=0.068 Sum_probs=58.6
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHH----HHHHHHhCCCCCCHHH
Q 037911 132 IVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFK----TFRKTLDVGFQPSIVS 207 (609)
Q Consensus 132 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~----~~~~~~~~~~~~~~~~ 207 (609)
+..-|.+++++++|++++..-.. .+.+.|+...|-+ +.+...+.+.+++...
T Consensus 39 l~~Ry~~~~~~~eAidlL~~ga~------------------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~ 94 (312)
T 2wpv_A 39 IANRYVRSKSYEHAIELISQGAL------------------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDIS 94 (312)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH------------------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHH------------------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHH
Confidence 34456677778877777655432 2334444444433 3444445667777777
Q ss_pred HHHHHHHHHhcCChH-HHHHHHHHHh----hCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 037911 208 CNFLLNGLLKLNCID-QCWQVYEEMG----RIG--ICPNTHTFNILTHVFCKNGDVDKVNGFLE 264 (609)
Q Consensus 208 ~~~ll~~~~~~~~~~-~a~~~~~~m~----~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 264 (609)
...++..+......+ .-.++.+++. +.| ..-+......+...|.+.|++.+|+..|-
T Consensus 95 ~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 95 VARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 666666665432211 1122233332 222 12355666677777777777777766554
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.36 E-value=1.9 Score=45.12 Aligned_cols=51 Identities=8% Similarity=-0.068 Sum_probs=35.1
Q ss_pred HHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 037911 355 YCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVEL 406 (609)
Q Consensus 355 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 406 (609)
+...|+++-|+.+-++.... .+-+..+|..|..+|...|+++.|+-.++.+
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 44567777777777777654 1224567777777777777777777777665
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=87.50 E-value=20 Score=34.12 Aligned_cols=93 Identities=13% Similarity=0.011 Sum_probs=54.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCccCHHHHHHH-
Q 037911 315 TLMNGLCKEGKVREAHQLFHRMVHRGLSPD-----IVSYNTLIFAYCKEGKMQESKSLLYEMMGN--GIYPDTFTCQII- 386 (609)
Q Consensus 315 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l- 386 (609)
-++..|...|++.+|.+++.++.+.--..| ..+|..-+..|...+++.++...+...... .+.+++.....+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 466777777888887777777765311111 234555666777788888888777766532 122333222111
Q ss_pred ---HHHHH-ccCCHHHHHHHHHHHH
Q 037911 387 ---VQGYG-KEGRLLSALNLVVELQ 407 (609)
Q Consensus 387 ---~~~~~-~~~~~~~A~~~~~~~~ 407 (609)
...+. ..++|..|...|-+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHH
Confidence 22345 6788888877776553
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=87.34 E-value=7.2 Score=30.14 Aligned_cols=77 Identities=16% Similarity=0.160 Sum_probs=53.2
Q ss_pred HHHHHHHHHHh-cCC-CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHH
Q 037911 486 STYRALICCFC-GIG-RSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFN 563 (609)
Q Consensus 486 ~~~~~li~~~~-~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 563 (609)
.-|..-...|. +.. +.-+..+-++.+....+.|++.+....+.+|.+.+|+..|.++|+-++.+- .+...+|..++.
T Consensus 52 EeFdaRy~~~F~~~~iD~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 52 EEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 33443333333 444 555677777777777888889888888899999999999999888887654 233445766654
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=87.21 E-value=35 Score=36.60 Aligned_cols=314 Identities=11% Similarity=-0.017 Sum_probs=164.5
Q ss_pred HHHHhcCCHhHHHHHHHHHhhCC--ccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------CCCHHHHHHHHH
Q 037911 283 SSYCKKGRLNDAFYLYRIMYRRN--VLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGL-------SPDIVSYNTLIF 353 (609)
Q Consensus 283 ~~~~~~g~~~~a~~~~~~~~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-------~p~~~~~~~li~ 353 (609)
-+....|+.++++.++......+ -.+....-..+.-+....|..+++..++.......- .+....-..+.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 45667888888888887766421 111222333344455666766678887777664311 011112222323
Q ss_pred HHHHcCC-hHHHHHHHHHHHHCCCccCH--HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hc
Q 037911 354 AYCKEGK-MQESKSLLYEMMGNGIYPDT--FTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALC--QD 428 (609)
Q Consensus 354 ~~~~~g~-~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~ 428 (609)
++.-.|. -+++.+.+..++...- +.. ..-..+...+...|+-+....++..+.+. .+..+...+..++. ..
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINY 537 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhC
Confidence 3333332 2456666666665321 111 12223344466778888777787777664 24444444544444 67
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHH
Q 037911 429 NRPFAATSLLERIGQDGYVPSLEIY--NELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVS 506 (609)
Q Consensus 429 ~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 506 (609)
|+.+.+..+++.+.... .|....- .++.-+|+..|+.....+++..+.+.. ..+......+.-++...|+.+.+.+
T Consensus 538 g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 538 GRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp TCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred CChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHH
Confidence 88777777777776532 2222222 234456778899888888888887642 1233333333344555677777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCH-HHHHHHHHHHHHcCCCCChhcHHHHHHHHH--hcC-------CHHHHHH
Q 037911 507 LMDEMLESGMLPDSQICRVLINGYCMEKDV-NKAEALLGFFAKKFQIYDTESYNAVFNMFA--EDG-------DLSKLME 576 (609)
Q Consensus 507 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g-------~~~~A~~ 576 (609)
+++.+.+.+ .|....-..+.-+....|+. .+|..++..+.. .+|..+-..-+-++. -.| +....++
T Consensus 616 lv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~ 691 (963)
T 4ady_A 616 IVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSMILIQQTEKLNPQVADINK 691 (963)
T ss_dssp HTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHH
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHH
Confidence 777666543 34433333444444444443 677888888874 344433323333333 333 2333334
Q ss_pred HHHHHHHc-CCCCChhhHHHHHHHHhccccc
Q 037911 577 LQKRFLRL-GFAPNNLTCKYMIHSLWKGMER 606 (609)
Q Consensus 577 ~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~ 606 (609)
.+...... .-.++...-..+-.|+...|+.
T Consensus 692 ~L~~~~~dk~~d~~~~fga~iAqGll~aG~~ 722 (963)
T 4ady_A 692 NFLSVITNKHQEGLAKFGACVAQGIMNAGGR 722 (963)
T ss_dssp HHHHHHHCSSSCHHHHHHHHHHHHHHTTGGG
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHhcCCC
Confidence 33333322 2233444444555666665543
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=86.98 E-value=18 Score=33.07 Aligned_cols=105 Identities=10% Similarity=0.042 Sum_probs=60.0
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH----HHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQ----VYEEMGRIGICPNTHTFNILTHVFCKNG 254 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~----~~~~m~~~~~~~~~~~~~~l~~~~~~~g 254 (609)
-|.+.+++++|++++..- ...+.+.|+...|-+ +.+-..+.+++++......++..+....
T Consensus 42 Ry~~~~~~~eAidlL~~g---------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p 106 (312)
T 2wpv_A 42 RYVRSKSYEHAIELISQG---------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELD 106 (312)
T ss_dssp HHHHTTCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCC
T ss_pred HHHHhcCHHHHHHHHHHH---------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 577888888888876543 223455666655444 3444556677788777777777665533
Q ss_pred ChH-HHHHHHHHHH----HcC--CCCCHHhHHHHHHHHHhcCCHhHHHHHH
Q 037911 255 DVD-KVNGFLEKIE----EEG--FDPDLVTYNTLISSYCKKGRLNDAFYLY 298 (609)
Q Consensus 255 ~~~-~a~~~~~~~~----~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~ 298 (609)
.-+ .-.++++.+. +.| ..-++.....+...|.+.|++.+|...|
T Consensus 107 ~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 107 PSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp TTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 211 1122333322 121 1125556666667777777777766655
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=86.94 E-value=9.1 Score=29.59 Aligned_cols=44 Identities=5% Similarity=-0.009 Sum_probs=20.3
Q ss_pred HHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037911 539 AEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFL 582 (609)
Q Consensus 539 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 582 (609)
..+-++.+......|++.+..+.+++|.+.+++.-|+++++-.+
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK 115 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 115 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33333444434444444444444444444444444444444444
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=86.63 E-value=17 Score=40.70 Aligned_cols=149 Identities=14% Similarity=0.099 Sum_probs=86.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHh--------------------hCC
Q 037911 246 LTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMY--------------------RRN 305 (609)
Q Consensus 246 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~--------------------~~~ 305 (609)
++..+.+.+..+.+.++..-. +.+...--.+..+|...|++++|.+.|++.. ...
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 444455555555555443322 1233333344455666666666666664431 100
Q ss_pred --ccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccC
Q 037911 306 --VLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPD----IVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPD 379 (609)
Q Consensus 306 --~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 379 (609)
...-..-|..++..+.+.+.++.+.++-....+....-+ ...|..+...+...|++++|...+-.+..... -
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r 970 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--K 970 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--C
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--H
Confidence 111234467777788888888888777766655421111 12567778888888888888888877765533 3
Q ss_pred HHHHHHHHHHHHccCCHHHHHH
Q 037911 380 TFTCQIIVQGYGKEGRLLSALN 401 (609)
Q Consensus 380 ~~~~~~l~~~~~~~~~~~~A~~ 401 (609)
......++...|..|..+.-+.
T Consensus 971 ~~cLr~LV~~lce~~~~~~L~~ 992 (1139)
T 4fhn_B 971 KSCLLDFVNQLTKQGKINQLLN 992 (1139)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCChhhhhC
Confidence 4567777777777776665543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.29 E-value=3.7 Score=33.26 Aligned_cols=52 Identities=6% Similarity=-0.047 Sum_probs=34.5
Q ss_pred CChhHHHHHHHHhhhcCCCCCC-------HHhHHHHHHHHHhCCChhHHHHHHHHHHHh
Q 037911 104 SDSVSALTFFNWVKNDLEIKPT-------SSNYCLIVHILAWNNKFSFAMKMLCELVEL 155 (609)
Q Consensus 104 ~~~~~A~~~f~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 155 (609)
+.++.|.-+.+.+..-.+..++ ..++..+++++...|+|..|...|+++++.
T Consensus 34 ~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 34 GLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp TCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 4566665555554432212222 246677889999999999999999998765
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=85.97 E-value=21 Score=32.90 Aligned_cols=25 Identities=8% Similarity=-0.032 Sum_probs=16.7
Q ss_pred CHHHHHHHHHHHhcCCCHhHHHHHH
Q 037911 484 SLSTYRALICCFCGIGRSGEAVSLM 508 (609)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~~A~~~~ 508 (609)
|+.....+...|.+.+++.+|...|
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHH
Confidence 5555566667777777777776666
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=84.90 E-value=11 Score=29.16 Aligned_cols=12 Identities=25% Similarity=0.266 Sum_probs=4.3
Q ss_pred hcCCHHHHHHHH
Q 037911 322 KEGKVREAHQLF 333 (609)
Q Consensus 322 ~~~~~~~a~~~~ 333 (609)
+.|++++|.+..
T Consensus 90 klgdY~~Ar~y~ 101 (134)
T 3o48_A 90 KLGEYSMAKRYV 101 (134)
T ss_dssp HHTCHHHHHHHH
T ss_pred HhhhHHHHHHHH
Confidence 333333333333
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=83.03 E-value=29 Score=32.03 Aligned_cols=25 Identities=16% Similarity=0.125 Sum_probs=16.5
Q ss_pred CHHhHHHHHHHHHhcCCHhHHHHHH
Q 037911 274 DLVTYNTLISSYCKKGRLNDAFYLY 298 (609)
Q Consensus 274 ~~~~~~~li~~~~~~g~~~~a~~~~ 298 (609)
|+.....+...|.+.+++.+|...|
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHH
Confidence 4555566667777777777776655
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.85 E-value=11 Score=31.74 Aligned_cols=56 Identities=14% Similarity=-0.045 Sum_probs=38.8
Q ss_pred CCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC
Q 037911 498 IGRSGEAVSLMDEMLESGMLP-DSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIY 553 (609)
Q Consensus 498 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 553 (609)
.+...++..+|..|...|+-. -...|......+...|++.+|.++|+..++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 444667778888777766543 34567777777778888888888887777665444
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.08 E-value=25 Score=34.13 Aligned_cols=53 Identities=17% Similarity=0.008 Sum_probs=33.2
Q ss_pred HHHHhCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 037911 179 AYVKVGLIRESFKTFRKTLDV--GFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEM 231 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 231 (609)
.|.+.|++++|.+.|.++.+. +...-+..+-.+++.+...+++..+...+++.
T Consensus 140 ~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 140 YYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp HHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 677777777777777777652 22233445556666666666666666666655
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 609 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.92 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.59 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.59 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.27 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.23 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.23 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.18 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.18 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.13 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.12 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.09 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.99 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.95 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.76 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.67 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.63 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.61 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.53 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.52 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.51 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.5 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.46 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.43 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.37 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.33 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.29 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.28 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.2 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.14 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.07 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.06 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.04 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.01 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.0 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.0 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.96 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.95 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.94 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.92 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.91 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.85 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.85 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.78 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.73 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.69 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.67 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.62 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.6 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.54 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.45 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.4 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.91 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.61 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.48 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.22 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.22 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.08 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.52 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.68 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 90.85 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 90.52 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 90.12 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 89.13 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=2.7e-21 Score=189.21 Aligned_cols=383 Identities=14% Similarity=0.028 Sum_probs=188.6
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 037911 132 IVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFL 211 (609)
Q Consensus 132 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 211 (609)
+++.+.+.|++++|.+.++++++. .|.+..++..+.. .|.+.|++++|+..|+++++.. +.+..+|..+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~---~p~~~~~~~~la~-------~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l 73 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQ---EPDNTGVLLLLSS-------IHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNL 73 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 344455556666666666666554 3444555555555 5666666666666666665543 3345555556
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCH
Q 037911 212 LNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRL 291 (609)
Q Consensus 212 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 291 (609)
..++.+.|++++|.+.+....+.. +.+..............+....+........... .................+..
T Consensus 74 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 151 (388)
T d1w3ba_ 74 GNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRL 151 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCH
T ss_pred HHHhhhhccccccccccccccccc-cccccccccccccccccccccccccccccccccc-cccccccccccccccccchh
Confidence 666666666666666666555432 2233333333333334444444444433333332 12233333333444445555
Q ss_pred hHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 037911 292 NDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEM 371 (609)
Q Consensus 292 ~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 371 (609)
..+...+......... +...+..+...+...|++++|...+++..+.. +-+...+..+...+...|++++|...+++.
T Consensus 152 ~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 229 (388)
T d1w3ba_ 152 EEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRA 229 (388)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHH
T ss_pred hhhHHHHHHhhccCcc-hhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHh
Confidence 5555555544443221 33444445555555555555555555554431 113344444555555555555555555554
Q ss_pred HHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 037911 372 MGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLE 451 (609)
Q Consensus 372 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 451 (609)
...+ ..+...+..+...+.+.|++++|+..+++..+.. +.+..
T Consensus 230 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~------------------------------------p~~~~ 272 (388)
T d1w3ba_ 230 LSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ------------------------------------PHFPD 272 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC------------------------------------SSCHH
T ss_pred HHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------------------------------------CCCHH
Confidence 4432 1233344444444444555555555554444432 22344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 037911 452 IYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYC 531 (609)
Q Consensus 452 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 531 (609)
++..+...+...|++++|++.++...... +.+...+..+..++...|++++|++.++++++.. +-+..++..+..+|.
T Consensus 273 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 350 (388)
T d1w3ba_ 273 AYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQ 350 (388)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 45555555555555555555555554432 1344445555555555555555555555555421 223444555555555
Q ss_pred ccCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcCC
Q 037911 532 MEKDVNKAEALLGFFAKKFQIY-DTESYNAVFNMFAEDGD 570 (609)
Q Consensus 532 ~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 570 (609)
+.|++++|.+.|+++.+. .| +...|..++.+|.+.||
T Consensus 351 ~~g~~~~A~~~~~~al~l--~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 351 QQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred HcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 666666666666555543 23 23455555555555553
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=5e-21 Score=187.28 Aligned_cols=379 Identities=12% Similarity=0.022 Sum_probs=243.6
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDK 258 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (609)
.+.+.|++++|++.++++.+.. +-+..++..+..++.+.|++++|...|++..+.. +-+..++..+..++.+.|++++
T Consensus 8 ~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~ 85 (388)
T d1w3ba_ 8 REYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccccc
Confidence 4566777777777777776643 3456666666666666677777777766665532 2334555666666666666666
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037911 259 VNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVH 338 (609)
Q Consensus 259 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 338 (609)
|...+....+.. ..+..............+....+............. ..........
T Consensus 86 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-------------------- 143 (388)
T d1w3ba_ 86 AIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGN-------------------- 143 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHH--------------------
T ss_pred cccccccccccc-cccccccccccccccccccccccccccccccccccc-cccccccccc--------------------
Confidence 666666655543 122333333333333333333333333333322211 2222222333
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 037911 339 RGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIY 418 (609)
Q Consensus 339 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 418 (609)
.....+....+...+....... +.+...+..+...+...|++++|...+++..+.. +-+...+
T Consensus 144 ---------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 206 (388)
T d1w3ba_ 144 ---------------LLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAY 206 (388)
T ss_dssp ---------------HHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred ---------------cccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHH
Confidence 3334444444444444443321 1133444444555555555555555555555443 2244555
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcC
Q 037911 419 DYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGI 498 (609)
Q Consensus 419 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 498 (609)
..+...+...|++++|...+++..... +.+...+..+...+.+.|++++|+..|++..+... -+..++..+...+...
T Consensus 207 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~ 284 (388)
T d1w3ba_ 207 INLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEK 284 (388)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHH
T ss_pred HHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc
Confidence 666666666666667766666664433 34667788888899999999999999999988642 4567889999999999
Q ss_pred CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHH
Q 037911 499 GRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQ 578 (609)
Q Consensus 499 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 578 (609)
|++++|++.++.+... .+.+...+..+...+.+.|++++|.+.+++..+.. +-+..++..++.+|.+.|++++|++.|
T Consensus 285 ~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~ 362 (388)
T d1w3ba_ 285 GSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHY 362 (388)
T ss_dssp SCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCHHHHHHHHHhhhcc-CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999875 36678889999999999999999999999998762 334578899999999999999999999
Q ss_pred HHHHHcCCCCCh-hhHHHHHHHHhccc
Q 037911 579 KRFLRLGFAPNN-LTCKYMIHSLWKGM 604 (609)
Q Consensus 579 ~~m~~~g~~p~~-~~~~~ll~~~~~~~ 604 (609)
+++++ +.|+. ..+..+-..|.+-+
T Consensus 363 ~~al~--l~P~~~~a~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 363 KEAIR--ISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHT--TCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHH--hCCCCHHHHHHHHHHHHHcC
Confidence 99995 46764 45666666665443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=6.8e-13 Score=125.28 Aligned_cols=242 Identities=14% Similarity=0.061 Sum_probs=124.5
Q ss_pred HHHHhcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccc
Q 037911 97 RVLLRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDC 176 (609)
Q Consensus 97 ~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (609)
+......|+++.|+..|+.+.+. .+.++.+|..++.++...|++++|...++++++. .|.+...+..+..
T Consensus 26 g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~----- 95 (323)
T d1fcha_ 26 GLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQELLAISALRRCLEL---KPDNQTALMALAV----- 95 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH-----
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcc---ccccccccccccc-----
Confidence 33344445555555555555542 1224455555555555555555555555555544 2334444444444
Q ss_pred hhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCh
Q 037911 177 NWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDV 256 (609)
Q Consensus 177 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 256 (609)
.|...|++++|++.++++.... |+............ ...+.......+..+...+.+
T Consensus 96 --~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~ 152 (323)
T d1fcha_ 96 --SFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGA-------------------GGAGLGPSKRILGSLLSDSLF 152 (323)
T ss_dssp --HHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC----------------------------------CTTHHHHHHHHH
T ss_pred --cccccccccccccchhhHHHhc--cchHHHHHhhhhhh-------------------hhcccccchhhHHHHHHhhHH
Confidence 4555555555555555554422 11100000000000 000000011112223344555
Q ss_pred HHHHHHHHHHHHcCC-CCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 037911 257 DKVNGFLEKIEEEGF-DPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHR 335 (609)
Q Consensus 257 ~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 335 (609)
.++.+.+.+..+... ..+..++..+...+...|++++|+..|++....... +..+|..+...+...|++++|.+.|++
T Consensus 153 ~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~ 231 (323)
T d1fcha_ 153 LEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRR 231 (323)
T ss_dssp HHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHH
Confidence 666666666554421 234555666666777777777777777776655433 456666677777777777777777777
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037911 336 MVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMG 373 (609)
Q Consensus 336 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 373 (609)
..+.. +-+...|..+..+|.+.|++++|+..|++.++
T Consensus 232 al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 232 ALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHh-hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66542 22455666677777777777777777776654
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=1.2e-12 Score=123.47 Aligned_cols=235 Identities=12% Similarity=0.068 Sum_probs=147.8
Q ss_pred ccCCChhhhhhhhhcCcCCCCChHHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHH
Q 037911 70 KKGDSHLTLLQNDLKPLLPHLGAHEISRVLLRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKML 149 (609)
Q Consensus 70 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 149 (609)
++...+...++..++..|.+..+...++.+....++++.|+..|+.+... .+.+...|..++.++...|++++|.+.+
T Consensus 33 g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~ 110 (323)
T d1fcha_ 33 GDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL--KPDNQTALMALAVSFTNESLQRQACEIL 110 (323)
T ss_dssp TCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcc--ccccccccccccccccccccccccccch
Confidence 44557778888999999988888888888888899999999999999863 2347889999999999999999999999
Q ss_pred HHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 037911 150 CELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYE 229 (609)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 229 (609)
+.+.... |............ ... .+.......+..+...+.+.+|.+.|.
T Consensus 111 ~~~~~~~---~~~~~~~~~~~~~--------~~~-------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (323)
T d1fcha_ 111 RDWLRYT---PAYAHLVTPAEEG--------AGG-------------------AGLGPSKRILGSLLSDSLFLEVKELFL 160 (323)
T ss_dssp HHHHHTS---TTTGGGCC------------------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHhc---cchHHHHHhhhhh--------hhh-------------------cccccchhhHHHHHHhhHHHHHHHHHH
Confidence 9998762 2222211111000 000 000001111122223344555555555
Q ss_pred HHhhCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccC
Q 037911 230 EMGRIG-ICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLP 308 (609)
Q Consensus 230 ~m~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 308 (609)
+..+.. -..+...+..+...+...|++++|...+++..... +-+..+|..+..+|...|++++|++.|++..+....
T Consensus 161 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~- 238 (323)
T d1fcha_ 161 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG- 238 (323)
T ss_dssp HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhhc-
Confidence 554321 12334555666666666666777766666666543 224556666666677777777777777766654322
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037911 309 DLVTYTTLMNGLCKEGKVREAHQLFHRMVH 338 (609)
Q Consensus 309 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 338 (609)
+..+|..+..+|.+.|++++|...|++..+
T Consensus 239 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 239 YIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455666666777777777777777766654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=1.2e-09 Score=101.45 Aligned_cols=196 Identities=11% Similarity=0.044 Sum_probs=97.8
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhC-CHHHHHHHHHHHHhCCCCCCHH
Q 037911 128 NYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVG-LIRESFKTFRKTLDVGFQPSIV 206 (609)
Q Consensus 128 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~ 206 (609)
.|..+..++.+.+.+++|++.++++++. .|.+..++..... .+...| ++++|++.++++++.. +-+..
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~l---nP~~~~a~~~r~~-------~l~~l~~~~~eal~~~~~al~~~-p~~~~ 113 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIEL---NAANYTVWHFRRV-------LLKSLQKDLHEEMNYITAIIEEQ-PKNYQ 113 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHH---CTTCHHHHHHHHH-------HHHHTTCCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHH---CCCChHHHHHHHH-------HHHHhCcCHHHHHHHHHHHHHHH-Hhhhh
Confidence 3334444445555555555555555554 3344444444444 444444 2555555555555543 34455
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 037911 207 SCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYC 286 (609)
Q Consensus 207 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 286 (609)
+|+.+...+.+.|++++|++.++++.+.. +.+...|..+...+.+.|++++|++.++++.+.+ +-+...|+.+...+.
T Consensus 114 a~~~~~~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~ 191 (315)
T d2h6fa1 114 VWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVIS 191 (315)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHhHHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHH
Confidence 55555555555555555555555555432 2345555555555555555555555555555543 123445554444444
Q ss_pred hcCC------HhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037911 287 KKGR------LNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVH 338 (609)
Q Consensus 287 ~~g~------~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 338 (609)
+.+. +++|++.+.+..+..+. +...|..+...+. ....+++.+.++...+
T Consensus 192 ~~~~~~~~~~~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 192 NTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQ-DRGLSKYPNLLNQLLD 247 (315)
T ss_dssp HTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHT-TTCGGGCHHHHHHHHH
T ss_pred HccccchhhhhHHhHHHHHHHHHhCCC-chHHHHHHHHHHH-hcChHHHHHHHHHHHH
Confidence 4333 45556666555554332 4455554444332 2334555555555544
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.23 E-value=3.7e-09 Score=100.37 Aligned_cols=275 Identities=12% Similarity=0.033 Sum_probs=164.9
Q ss_pred HhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCc--HHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCC----
Q 037911 127 SNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHS--VDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVG---- 200 (609)
Q Consensus 127 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---- 200 (609)
+.....+.++...|++++|.+++++.++..+..++. ...+..+.. .|...|++++|+..|+++.+..
T Consensus 13 e~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~-------~~~~~g~~~~A~~~~~~a~~~~~~~~ 85 (366)
T d1hz4a_ 13 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGE-------VLHCKGELTRSLALMQQTEQMARQHD 85 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHH-------HHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHH-------HHHHCCCHHHHHHHHHHHHHHHHhhc
Confidence 334445666677777777777777777652222111 123444444 6777788888888777766421
Q ss_pred C-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh----CCCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-
Q 037911 201 F-QPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGR----IGICP---NTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGF- 271 (609)
Q Consensus 201 ~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~- 271 (609)
. ......+..+...+...|++..+...+.+... .+... ....+..+...+...|+++.+...+........
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~ 165 (366)
T d1hz4a_ 86 VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS 165 (366)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhh
Confidence 1 11123445556667777888877777766542 11111 123455566777788888888888877765421
Q ss_pred ---CCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhC----CccC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037911 272 ---DPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRR----NVLP--DLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLS 342 (609)
Q Consensus 272 ---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~ 342 (609)
......+......+...++...+...+.+.... +..+ ....+..+...+...|++++|...+....+....
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 245 (366)
T d1hz4a_ 166 YQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFA 245 (366)
T ss_dssp SCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCT
T ss_pred hhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccc
Confidence 122344555566677778888777777665531 1111 1223455566677778888888887776554221
Q ss_pred C---CHHHHHHHHHHHHHcCChHHHHHHHHHHHH----CCCccC-HHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 037911 343 P---DIVSYNTLIFAYCKEGKMQESKSLLYEMMG----NGIYPD-TFTCQIIVQGYGKEGRLLSALNLVVELQR 408 (609)
Q Consensus 343 p---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 408 (609)
. ....+..+...+...|++++|...++++.. .+..|+ ...+..+...|.+.|++++|++.+++..+
T Consensus 246 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 246 NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp TCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 234455567777788888888888877653 233332 34566667777777888888777776543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=2e-09 Score=100.00 Aligned_cols=216 Identities=10% Similarity=0.060 Sum_probs=167.6
Q ss_pred HHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhCCCCCCHH
Q 037911 163 VDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLN-CIDQCWQVYEEMGRIGICPNTH 241 (609)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~ 241 (609)
.+++..+.. .+.+.+++++|++.++++++.. |-+..+|+....++...| ++++|+..+++..+.. +-+..
T Consensus 43 ~~a~~~~~~-------~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~ 113 (315)
T d2h6fa1 43 RDVYDYFRA-------VLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQ 113 (315)
T ss_dssp HHHHHHHHH-------HHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHHH-------HHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-Hhhhh
Confidence 445555555 7888999999999999999976 667889999999988876 5899999999998753 45688
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHH
Q 037911 242 TFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLC 321 (609)
Q Consensus 242 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~ 321 (609)
+|..+...+.+.|++++|++.++++.+.. +.+..+|..+...+.+.|++++|++.++++++.++. +...|+.+...+.
T Consensus 114 a~~~~~~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~ 191 (315)
T d2h6fa1 114 VWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVIS 191 (315)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHhHHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHH
Confidence 99999999999999999999999999874 346889999999999999999999999999997665 7778888777776
Q ss_pred hcCC------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCc-cCHHHHHHHHHHHH
Q 037911 322 KEGK------VREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIY-PDTFTCQIIVQGYG 391 (609)
Q Consensus 322 ~~~~------~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 391 (609)
+.+. +++|.+.+....+.. +.+...|+.+...+. ....+++...++...+.... .+...+..++..|.
T Consensus 192 ~~~~~~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 192 NTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp HTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred HccccchhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 6655 578888888887763 336677776665544 44467777888777654222 23445555555553
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.18 E-value=1.6e-08 Score=95.89 Aligned_cols=273 Identities=10% Similarity=0.076 Sum_probs=197.0
Q ss_pred HHHHHHHhcCCChhHHHHHHHHhhhcCCCCCC---HHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcH---HhHH
Q 037911 94 EISRVLLRCQSDSVSALTFFNWVKNDLEIKPT---SSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSV---DVFQ 167 (609)
Q Consensus 94 ~~~~~l~~~~~~~~~A~~~f~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~ 167 (609)
.+...+....|+++.|+.+|+.+.......+. ..++..+..++...|++++|...++++++.....+... ..+.
T Consensus 16 ~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 95 (366)
T d1hz4a_ 16 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 95 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 44455667789999999999999874322221 34677889999999999999999999987633332222 2333
Q ss_pred HHhhccccchhHHHHhCCHHHHHHHHHHHHh----CCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC----C
Q 037911 168 DLISCTEDCNWAYVKVGLIRESFKTFRKTLD----VGFQ--P-SIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIG----I 236 (609)
Q Consensus 168 ~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~----~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----~ 236 (609)
.+.. .+...|++..+...+.+..+ .+.. + ....+..+...+...|+++.+...+....... .
T Consensus 96 ~~~~-------~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 168 (366)
T d1hz4a_ 96 QQSE-------ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP 168 (366)
T ss_dssp HHHH-------HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG
T ss_pred HHHH-------HHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhh
Confidence 3444 78899999999999988764 1111 1 12355667788899999999999998876532 2
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC--CHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccC--
Q 037911 237 CPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEE----GFDP--DLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLP-- 308 (609)
Q Consensus 237 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-- 308 (609)
......+..+...+...++...+...+.+.... +..+ ....+..+...+...|++++|...+++........
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 248 (366)
T d1hz4a_ 169 QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNH 248 (366)
T ss_dssp GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCG
T ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccch
Confidence 223455666777788899999999888876543 1111 12345666778889999999999999887643322
Q ss_pred -CHhhHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037911 309 -DLVTYTTLMNGLCKEGKVREAHQLFHRMVH----RGLSPD-IVSYNTLIFAYCKEGKMQESKSLLYEMMG 373 (609)
Q Consensus 309 -~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 373 (609)
....+..+...+...|++++|...+++... .+..|+ ...+..+..+|.+.|++++|.+.+++.++
T Consensus 249 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 249 FLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 234566788899999999999999998764 244443 35677788899999999999999998764
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.18 E-value=8.5e-09 Score=95.52 Aligned_cols=189 Identities=10% Similarity=0.068 Sum_probs=122.1
Q ss_pred hCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 037911 183 VGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGF 262 (609)
Q Consensus 183 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 262 (609)
.+..++|..+|++.++...+.+...|...+..+.+.|+++.|..+|+++.+.........|...+..+.+.|+++.|.++
T Consensus 77 ~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i 156 (308)
T d2onda1 77 KLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMI 156 (308)
T ss_dssp HHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHH
Confidence 34557778888887765445566677777777778888888888888877643222234567777777777788888888
Q ss_pred HHHHHHcCCCCCHHhHHHHHHH-HHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-
Q 037911 263 LEKIEEEGFDPDLVTYNTLISS-YCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRG- 340 (609)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g- 340 (609)
|+.+.+.+.. +...|...... +...|+.+.|..+|+.+.+.... +...|...+..+.+.|+++.|..+|++..+..
T Consensus 157 ~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~-~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 157 FKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 8777765422 33333333322 33456777777777777765322 45667777777777777777777777776652
Q ss_pred CCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037911 341 LSPD--IVSYNTLIFAYCKEGKMQESKSLLYEMMG 373 (609)
Q Consensus 341 ~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 373 (609)
..|+ ...|...+..-...|+.+.+..+++++.+
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2332 34566666666666777777777766654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.13 E-value=1.5e-08 Score=93.86 Aligned_cols=188 Identities=10% Similarity=0.024 Sum_probs=143.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037911 395 RLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKD 474 (609)
Q Consensus 395 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 474 (609)
..++|..++++..+...+.+...+...+..+...|+++.|..+++++..........+|...+..+.+.|+.+.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 45778888888877655556677777888888888888998888888765544445678888888888999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHH-HhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-C
Q 037911 475 EMVDRNIKPSLSTYRALICC-FCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQ-I 552 (609)
Q Consensus 475 ~~~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~ 552 (609)
.+.+.+. .+...|...... +...|+.+.|..+|+.+.+. .+.+...+..++..+...|+++.|+.+|++..+... .
T Consensus 159 ~al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 159 KAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 9887653 233334333332 34568899999999999875 355678888999999999999999999999887642 2
Q ss_pred CC--hhcHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037911 553 YD--TESYNAVFNMFAEDGDLSKLMELQKRFLRL 584 (609)
Q Consensus 553 ~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 584 (609)
|+ ...|..++..-...|+.+.+.++++++.+.
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 22 246888888778889999999999988754
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.12 E-value=2.7e-09 Score=96.30 Aligned_cols=150 Identities=9% Similarity=-0.058 Sum_probs=97.9
Q ss_pred hHHHHHHHHhhhcCCCCC--CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhC
Q 037911 107 VSALTFFNWVKNDLEIKP--TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVG 184 (609)
Q Consensus 107 ~~A~~~f~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g 184 (609)
+.|+.-++.+.......+ ....|..++.+|.+.|++++|+..|+++++. .|....++..+.. +|.+.|
T Consensus 16 e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l---~p~~~~a~~~lg~-------~~~~~g 85 (259)
T d1xnfa_ 16 EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI---RPDMPEVFNYLGI-------YLTQAG 85 (259)
T ss_dssp HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHHHHHH-------HHHHTT
T ss_pred HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc---CCCCHHHHhhhch-------HHHHHH
Confidence 345555555554322222 3456777778888888888888888888876 4566777777777 788888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 037911 185 LIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLE 264 (609)
Q Consensus 185 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 264 (609)
++++|++.|+++++.. +.+..++..+..++...|++++|.+.|++..+.. +.+......+...+.+.+..+.+..+..
T Consensus 86 ~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (259)
T d1xnfa_ 86 NFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQ 163 (259)
T ss_dssp CHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 8888888888888754 3456677777777888888888888888776643 2334444444444455555555555555
Q ss_pred HHHH
Q 037911 265 KIEE 268 (609)
Q Consensus 265 ~~~~ 268 (609)
....
T Consensus 164 ~~~~ 167 (259)
T d1xnfa_ 164 HFEK 167 (259)
T ss_dssp HHHH
T ss_pred Hhhc
Confidence 4444
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.09 E-value=4.3e-10 Score=106.05 Aligned_cols=274 Identities=9% Similarity=-0.028 Sum_probs=189.7
Q ss_pred hCCChhHHHHHHHHHHHhhCCCCCcHHhHHHH---hhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 037911 138 WNNKFSFAMKMLCELVELVKDCPHSVDVFQDL---ISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNG 214 (609)
Q Consensus 138 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 214 (609)
..+..++|+.+++.+++. .|.....+... +.........+...|++++|+..++.+.+.. +.+...|..+..+
T Consensus 41 ~~~~~~~al~~~~~~l~~---~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~ 116 (334)
T d1dcea1 41 AGELDESVLELTSQILGA---NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 116 (334)
T ss_dssp TTCCSHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHH
Confidence 334446777777777765 34444443221 1100111115667778899999999998865 6678888888888
Q ss_pred HHhcCC--hHHHHHHHHHHhhCCCCCCHHHHH-HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCH
Q 037911 215 LLKLNC--IDQCWQVYEEMGRIGICPNTHTFN-ILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRL 291 (609)
Q Consensus 215 ~~~~~~--~~~a~~~~~~m~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 291 (609)
+...++ +++|...++++.+.. +.+...+. .+...+...+..++|+..++.+.+.. +-+...|+.+..++.+.|++
T Consensus 117 ~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~ 194 (334)
T d1dcea1 117 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQ 194 (334)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCC
T ss_pred HHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCH
Confidence 777664 789999999998753 34555554 44466777899999999999998875 34688899999999999998
Q ss_pred hHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 037911 292 NDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEM 371 (609)
Q Consensus 292 ~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 371 (609)
++|...++...+. .|+ .......+...+..+++...+....... +++...+..+...+...|+.++|...+.+.
T Consensus 195 ~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 268 (334)
T d1dcea1 195 PDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQEL 268 (334)
T ss_dssp CCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 8886665544332 111 1223344566677778888888877663 334555666777778889999999999988
Q ss_pred HHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 037911 372 MGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSIS-RDIYDYLIVALC 426 (609)
Q Consensus 372 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~ 426 (609)
.+.. +.+...+..+...+...|++++|++.++++.+.+ |+ ...|..+...+.
T Consensus 269 ~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld--P~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 269 EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD--PMRAAYLDDLRSKFL 321 (334)
T ss_dssp CTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHH
T ss_pred HhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--cccHHHHHHHHHHHh
Confidence 8663 2255778888889999999999999999998874 43 444454444433
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.99 E-value=6.9e-09 Score=93.56 Aligned_cols=219 Identities=9% Similarity=-0.009 Sum_probs=134.5
Q ss_pred ChhHHHHHHHHHHHhhCCC-CCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 037911 141 KFSFAMKMLCELVELVKDC-PHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLN 219 (609)
Q Consensus 141 ~~~~A~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 219 (609)
+.+.|+.-+++++...... +....++..+.. .|.+.|++++|+..|++.++.. +-++.+|+.+..++.+.|
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~-------~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g 85 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGV-------LYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAG 85 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHH-------HHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHH
Confidence 3445666666766541111 123345555555 8999999999999999999865 567888999999999999
Q ss_pred ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHH
Q 037911 220 CIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYR 299 (609)
Q Consensus 220 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 299 (609)
++++|++.|++..+.. +-+..++..+..++...|++++|.+.+++..+.. +.+......+..++.+.+..+.+..+..
T Consensus 86 ~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (259)
T d1xnfa_ 86 NFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQ 163 (259)
T ss_dssp CHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 9999999999988753 3346778888888999999999999999888764 2244444444455555565555555555
Q ss_pred HHhhCCccCCHhhHHHHHHHHHhcCCH----HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 037911 300 IMYRRNVLPDLVTYTTLMNGLCKEGKV----REAHQLFHRMVHRGLSP-DIVSYNTLIFAYCKEGKMQESKSLLYEMMGN 374 (609)
Q Consensus 300 ~~~~~~~~p~~~~~~~ll~~~~~~~~~----~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 374 (609)
....... +...++ ++..+...... +.+...+...... .| ...+|..+...|...|++++|...|++.+..
T Consensus 164 ~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 164 HFEKSDK--EQWGWN-IVEFYLGNISEQTLMERLKADATDNTSL--AEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp HHHHSCC--CSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred Hhhccch--hhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhc--CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 5544322 111221 22222221111 1111111111110 11 1234555666677777777777777777654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.95 E-value=3.8e-09 Score=99.35 Aligned_cols=249 Identities=8% Similarity=-0.067 Sum_probs=116.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----------hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 037911 185 LIRESFKTFRKTLDVGFQPSIVSCNFLLNGLL----------KLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNG 254 (609)
Q Consensus 185 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~----------~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 254 (609)
..++|+++++++++.. |-+...|+..-..+. ..|++++|+.+++...+.. +-+...|..+..++...+
T Consensus 44 ~~~~al~~~~~~l~~~-P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~ 121 (334)
T d1dcea1 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (334)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred ccHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhc
Confidence 3477888888877654 334445544333222 1223455555565555432 223444444444444443
Q ss_pred --ChHHHHHHHHHHHHcCCCCCHHhHH-HHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHH
Q 037911 255 --DVDKVNGFLEKIEEEGFDPDLVTYN-TLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQ 331 (609)
Q Consensus 255 --~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 331 (609)
++++|...++++.+.. +++...+. .....+...+..++|+..++...+.++. +...|+.+...+.+.|++++|..
T Consensus 122 ~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~~ 199 (334)
T d1dcea1 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (334)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHHHHH
Confidence 2555555555555542 12333332 2234444555566666655555555443 45555555555555555554433
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 037911 332 LFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGV 411 (609)
Q Consensus 332 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 411 (609)
.+....+. .|+ ...+...+...+..+++...+...... .
T Consensus 200 ~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~-----------------------------------~- 238 (334)
T d1dcea1 200 QGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLG-----------------------------------R- 238 (334)
T ss_dssp CCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHS-----------------------------------C-
T ss_pred HHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHh-----------------------------------C-
Confidence 33322221 000 011122223334444444444444333 2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037911 412 SISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDR 479 (609)
Q Consensus 412 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 479 (609)
+.+...+..+...+...++..++...+.+..... +.+...+..+...+...|++++|.+.++...+.
T Consensus 239 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 239 AEPLFRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1122223333334444444455555555443332 223455555666666666666666666666654
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.76 E-value=3e-07 Score=77.75 Aligned_cols=142 Identities=12% Similarity=-0.005 Sum_probs=93.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 037911 457 MESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDV 536 (609)
Q Consensus 457 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 536 (609)
...+...|+++.|++.|+++. .|+..+|..+..+|...|++++|++.|+++++.. +-+...|..+..++.+.|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccH
Confidence 344556677777777776542 2566677777777777777777777777777654 34566677777777777777
Q ss_pred HHHHHHHHHHHHcCCCC--------------C-hhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHh
Q 037911 537 NKAEALLGFFAKKFQIY--------------D-TESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMIHSLW 601 (609)
Q Consensus 537 ~~A~~~~~~~~~~~~~~--------------~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 601 (609)
++|.+.|++........ + ..++..+..++.+.|++++|.+.++...+....|+.......|..+.
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~~~~~Al~~~~ 166 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVW 166 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Confidence 77777777766431100 0 13345566778888888888888888876655555555665566555
Q ss_pred cc
Q 037911 602 KG 603 (609)
Q Consensus 602 ~~ 603 (609)
+.
T Consensus 167 ~~ 168 (192)
T d1hh8a_ 167 KQ 168 (192)
T ss_dssp TT
T ss_pred hh
Confidence 44
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.67 E-value=6.1e-07 Score=75.80 Aligned_cols=123 Identities=14% Similarity=-0.027 Sum_probs=97.1
Q ss_pred HHHHhcCCChhHHHHHHHHhhhcCCCCCCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccc
Q 037911 97 RVLLRCQSDSVSALTFFNWVKNDLEIKPTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDC 176 (609)
Q Consensus 97 ~~l~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 176 (609)
++.....++++.|++.|+.+. ++++..|..++.++...|++++|++.|+++++. .|.....|..+..
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~-----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l---dp~~~~a~~~~g~----- 78 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR---DKHLAVAYFQRGM----- 78 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH-----
T ss_pred HHHHHHCCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH---hhhhhhhHHHHHH-----
Confidence 466677899999999998643 467889999999999999999999999999987 4667888888888
Q ss_pred hhHHHHhCCHHHHHHHHHHHHhCCCC--------------CC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 037911 177 NWAYVKVGLIRESFKTFRKTLDVGFQ--------------PS-IVSCNFLLNGLLKLNCIDQCWQVYEEMGRI 234 (609)
Q Consensus 177 ~~~~~~~g~~~~A~~~~~~~~~~~~~--------------~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 234 (609)
+|.+.|++++|++.|++.++.... .+ ..++..+..++.+.|++++|.+.++...+.
T Consensus 79 --~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 79 --LYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp --HHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred --HHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 899999999999999998763210 11 234555666677777777777777776654
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.63 E-value=1.7e-06 Score=78.84 Aligned_cols=132 Identities=11% Similarity=0.136 Sum_probs=74.6
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHhhCCC---CCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhC----C-C
Q 037911 130 CLIVHILAWNNKFSFAMKMLCELVELVKDC---PHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDV----G-F 201 (609)
Q Consensus 130 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~----~-~ 201 (609)
...+++|...|+|++|.+.|.++.+..... +....+|..+.. .|.+.|++++|++.+++..+. | .
T Consensus 41 ~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~-------~y~~~~~~~~A~~~~~~a~~~~~~~~~~ 113 (290)
T d1qqea_ 41 VQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYK-------CFKSGGNSVNAVDSLENAIQIFTHRGQF 113 (290)
T ss_dssp HHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH-------HHHHhCCcHHHHHHHHHhhHHhhhcccc
Confidence 334567889999999999999988753222 223356677776 788899999998888877642 1 0
Q ss_pred CCCHHHHHHHHHHHH-hcCChHHHHHHHHHHhhC----CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037911 202 QPSIVSCNFLLNGLL-KLNCIDQCWQVYEEMGRI----GICP-NTHTFNILTHVFCKNGDVDKVNGFLEKIEE 268 (609)
Q Consensus 202 ~~~~~~~~~ll~~~~-~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 268 (609)
.....++..+...|. ..|++++|.+.|++..+. +.++ -..++..+...+.+.|++++|.+.++++..
T Consensus 114 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~ 186 (290)
T d1qqea_ 114 RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (290)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence 011223344444442 246666666666554321 1001 022344445555555555555555555444
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.61 E-value=9.2e-07 Score=80.60 Aligned_cols=96 Identities=7% Similarity=0.078 Sum_probs=42.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----H-HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCc-cC---HH
Q 037911 312 TYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPD-----I-VSYNTLIFAYCKEGKMQESKSLLYEMMGNGIY-PD---TF 381 (609)
Q Consensus 312 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~---~~ 381 (609)
++..+...+...|++++|..+|+++........ . ..+...+..+...|+++.|...+++..+.... ++ ..
T Consensus 160 ~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~ 239 (290)
T d1qqea_ 160 CFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESN 239 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HH
T ss_pred HHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHH
Confidence 344555555555566666555555554311110 0 11223333444556666666666555543110 11 12
Q ss_pred HHHHHHHHHHc--cCCHHHHHHHHHHHH
Q 037911 382 TCQIIVQGYGK--EGRLLSALNLVVELQ 407 (609)
Q Consensus 382 ~~~~l~~~~~~--~~~~~~A~~~~~~~~ 407 (609)
....++.++.. .+.+++|+..|+.+.
T Consensus 240 ~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 240 FLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 23334444433 234556665555433
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=2.8e-06 Score=64.90 Aligned_cols=92 Identities=20% Similarity=0.153 Sum_probs=59.2
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 037911 132 IVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFL 211 (609)
Q Consensus 132 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 211 (609)
-++.+...|++++|+..|+++++. .|.+...+..+.. +|...|++++|+..++++++.+ +.+...|..+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~---~p~~~~~~~~~a~-------~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~ 77 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSA-------AYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRK 77 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH-------HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc---CCcchhhhhcccc-------cccccccccccchhhhhHHHhc-cchhhHHHHH
Confidence 355566666677777766666655 4455666666655 6666677777776666666654 4566666666
Q ss_pred HHHHHhcCChHHHHHHHHHHhhC
Q 037911 212 LNGLLKLNCIDQCWQVYEEMGRI 234 (609)
Q Consensus 212 l~~~~~~~~~~~a~~~~~~m~~~ 234 (609)
..++...|++++|+..|++..+.
T Consensus 78 g~~~~~~~~~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 78 AAALEFLNRFEEAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHccCHHHHHHHHHHHHHh
Confidence 66666666666666666666653
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.52 E-value=0.00018 Score=63.85 Aligned_cols=224 Identities=13% Similarity=0.058 Sum_probs=113.9
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHH----hCCHHHHHHHHHHHHhCC
Q 037911 125 TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVK----VGLIRESFKTFRKTLDVG 200 (609)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~g~~~~A~~~~~~~~~~~ 200 (609)
|+..+.-+...+.+.+++++|++.|+++.+. .+...+..|.. .|.. ..+...|...++...+.+
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~-----g~~~A~~~Lg~-------~y~~G~~~~~d~~~a~~~~~~a~~~~ 68 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL-----KENSGCFNLGV-------LYYQGQGVEKNLKKAASFYAKACDLN 68 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----TCHHHHHHHHH-------HHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-----CCHHHHHHHHH-------HHHcCCCcchhHHHHHHhhccccccc
Confidence 3445555666666666666666666666554 12333333433 3433 446666666666666543
Q ss_pred CCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCC
Q 037911 201 FQPSIVSCNFLLNGLLK----LNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCK----NGDVDKVNGFLEKIEEEGFD 272 (609)
Q Consensus 201 ~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~ 272 (609)
+......+...+.. .++.+.|...++...+.|. ......+...+.. ......+...+......
T Consensus 69 ---~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~--- 139 (265)
T d1ouva_ 69 ---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL--- 139 (265)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---
T ss_pred ---ccchhhccccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---
Confidence 22333333333322 3455666666666655442 2222222222222 23345555555555443
Q ss_pred CCHHhHHHHHHHHHh----cCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCC
Q 037911 273 PDLVTYNTLISSYCK----KGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCK----EGKVREAHQLFHRMVHRGLSPD 344 (609)
Q Consensus 273 ~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~p~ 344 (609)
.+...+..+...+.. ..+...+...++...+.| +......+...+.. ..++++|..+|....+.| +
T Consensus 140 ~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~ 213 (265)
T d1ouva_ 140 NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---N 213 (265)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---C
T ss_pred cccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---C
Confidence 244555555555554 334555556665555543 33444444444443 446667777777766655 3
Q ss_pred HHHHHHHHHHHHH----cCChHHHHHHHHHHHHCC
Q 037911 345 IVSYNTLIFAYCK----EGKMQESKSLLYEMMGNG 375 (609)
Q Consensus 345 ~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~ 375 (609)
...+..|..+|.. ..+.++|.++|++..+.|
T Consensus 214 ~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 214 GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 4444455555543 225666777776666554
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=1.5e-06 Score=66.47 Aligned_cols=102 Identities=12% Similarity=-0.050 Sum_probs=72.8
Q ss_pred HHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCH
Q 037911 492 ICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDL 571 (609)
Q Consensus 492 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 571 (609)
...+...|++++|+.+|+++++.. +-+...|..+..++.+.|++++|+..++...+.. +.++..|..++.++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCH
Confidence 455667778888888888777653 4456677777888888888888888888777664 44567777777888888888
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHH
Q 037911 572 SKLMELQKRFLRLGFAPNNLTCKYMI 597 (609)
Q Consensus 572 ~~A~~~~~~m~~~g~~p~~~~~~~ll 597 (609)
++|+..|++.++. .|+...+...+
T Consensus 88 ~~A~~~~~~a~~~--~p~~~~~~~~l 111 (117)
T d1elwa_ 88 EEAKRTYEEGLKH--EANNPQLKEGL 111 (117)
T ss_dssp HHHHHHHHHHHTT--CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 8888888888743 66655544443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=2.4e-06 Score=69.63 Aligned_cols=93 Identities=12% Similarity=0.129 Sum_probs=55.2
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 037911 130 CLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCN 209 (609)
Q Consensus 130 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 209 (609)
...++.+.+.|+|++|+..|+++++. .|.+...+..+.. .|...|++++|+..|+++++.. +.+..+|.
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~~---~p~~~~~~~~lg~-------~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~ 82 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSL-------AYLRTECYGYALGDATRAIELD-KKYIKGYY 82 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHhhhcccc---chhhhhhhhhhHH-------HHHhccccchHHHHHHHHHHHc-ccchHHHH
Confidence 33455556666666666666666655 3445555555555 5666666666666666666543 44555666
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhh
Q 037911 210 FLLNGLLKLNCIDQCWQVYEEMGR 233 (609)
Q Consensus 210 ~ll~~~~~~~~~~~a~~~~~~m~~ 233 (609)
.+..++...|++++|...+++..+
T Consensus 83 ~~g~~~~~~g~~~eA~~~~~~a~~ 106 (159)
T d1a17a_ 83 RRAASNMALGKFRAALRDYETVVK 106 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666666666666655
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.46 E-value=0.00042 Score=61.37 Aligned_cols=229 Identities=14% Similarity=0.029 Sum_probs=112.8
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCccCHHHHHH
Q 037911 310 LVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCK----EGKMQESKSLLYEMMGNGIYPDTFTCQI 385 (609)
Q Consensus 310 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 385 (609)
+..+..|...+.+.+++++|+++|++..+.| +...+..|...|.. ..+...|...+......+ +......
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~ 75 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 75 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhc
Confidence 3445555566666677777777777766654 44444445555544 345666666666655543 2222223
Q ss_pred HHHHHH----ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 037911 386 IVQGYG----KEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLC 461 (609)
Q Consensus 386 l~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 461 (609)
+...+. ...+.+.|...++...+.|.. .....+...+... ..
T Consensus 76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~-------------------------------~~ 121 (265)
T d1ouva_ 76 LGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDG-------------------------------KV 121 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHC-------------------------------SS
T ss_pred cccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCC-------------------------------Cc
Confidence 322222 234455555555555544321 1111111111110 01
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----CCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----c
Q 037911 462 KCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCG----IGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCM----E 533 (609)
Q Consensus 462 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~ 533 (609)
.......+...+...... .+...+..+...+.. ..+...+...++...+.| +......+...|.. .
T Consensus 122 ~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~ 195 (265)
T d1ouva_ 122 VTRDFKKAVEYFTKACDL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGAT 195 (265)
T ss_dssp SCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSC
T ss_pred ccchhHHHHHHhhhhhcc---cccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccc
Confidence 123344444444444443 234444444444442 344555555556555543 34444444444443 4
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCC
Q 037911 534 KDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAE----DGDLSKLMELQKRFLRLGFA 587 (609)
Q Consensus 534 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~ 587 (609)
.++++|...|++..+.| ++..+..|...|.+ ..+.++|.++|++..+.|..
T Consensus 196 ~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 196 KNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred cchhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 46677777776666554 34455555555554 23566677777777666543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.43 E-value=1.9e-06 Score=73.59 Aligned_cols=99 Identities=14% Similarity=0.153 Sum_probs=65.8
Q ss_pred CCHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCC
Q 037911 124 PTSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQP 203 (609)
Q Consensus 124 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 203 (609)
|+...+...+..+.+.|+|++|+..|+++++. .|.+..+|..+.. +|.+.|++++|+..|+++++.. +-
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~---~p~~~~~~~~lg~-------~y~~~~~~~~Ai~~~~~al~l~-p~ 70 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRAL-------CYLKMQQPEQALADCRRALELD-GQ 70 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHTTSC-TT
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHhHHH-------HHhhhhhhhhhhHHHHHHHHhC-CC
Confidence 55666666677777777777777777777665 3556666666666 6777777777777777776643 33
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 037911 204 SIVSCNFLLNGLLKLNCIDQCWQVYEEMGR 233 (609)
Q Consensus 204 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 233 (609)
++.+|..+..++...|++++|+..|++..+
T Consensus 71 ~~~a~~~lg~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 71 SVKAHFFLGQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 566666666677777777777766666543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.37 E-value=6.5e-06 Score=66.99 Aligned_cols=121 Identities=8% Similarity=-0.046 Sum_probs=85.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 037911 454 NELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCME 533 (609)
Q Consensus 454 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 533 (609)
......|.+.|++++|+..|++.++.+. -+...|..+..+|...|++++|+..|+++++.. +-+...|..++.++...
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~ 91 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMAL 91 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHhhhccccch-hhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHc
Confidence 3345567788888888888888887653 466778888888888888888888888888754 44567888888888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhcHHHHHHH--HHhcCCHHHHHHH
Q 037911 534 KDVNKAEALLGFFAKKFQIYDTESYNAVFNM--FAEDGDLSKLMEL 577 (609)
Q Consensus 534 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~ 577 (609)
|++++|.+.+++..... +-+...+..+..+ ....+.+++|+..
T Consensus 92 g~~~eA~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 92 GKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 88888888888888763 2234444444333 2333445555443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.33 E-value=3.2e-06 Score=72.05 Aligned_cols=99 Identities=16% Similarity=0.038 Sum_probs=86.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCC-CHHHHHHH
Q 037911 448 PSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLP-DSQICRVL 526 (609)
Q Consensus 448 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l 526 (609)
|+...+......+.+.|++++|+..|++.++... .+...|..+..+|.+.|++++|+..|+++++. .| +...|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p-~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l--~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh--CCCcHHHHHHH
Confidence 6777788889999999999999999999988653 56788999999999999999999999999864 45 57788999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHc
Q 037911 527 INGYCMEKDVNKAEALLGFFAKK 549 (609)
Q Consensus 527 ~~~~~~~g~~~~A~~~~~~~~~~ 549 (609)
+.+|.+.|++++|...|+++.+.
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999999999999999988765
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.29 E-value=4.4e-06 Score=63.20 Aligned_cols=87 Identities=6% Similarity=-0.080 Sum_probs=37.5
Q ss_pred HHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 037911 133 VHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLL 212 (609)
Q Consensus 133 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll 212 (609)
+..+.+.|++++|+..++++++. .|.+...+..+.. .|.+.|++++|+..|+++++.. +.+..+|..+.
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~-------~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la 91 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGL-------TQAENEKDGLAIIALNHARMLD-PKDIAVHAALA 91 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhccc---ccccchhhhhhhh-------hhhhhhhHHHhhcccccccccc-cccccchHHHH
Confidence 33444444444444444444433 2333444444444 4444444444444444444432 23344444444
Q ss_pred HHHHhcCChHHHHHHHHH
Q 037911 213 NGLLKLNCIDQCWQVYEE 230 (609)
Q Consensus 213 ~~~~~~~~~~~a~~~~~~ 230 (609)
..|...|++++|.+.+++
T Consensus 92 ~~y~~~g~~~~A~~~l~~ 109 (112)
T d1hxia_ 92 VSHTNEHNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHH
Confidence 444444444444444443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=1.6e-06 Score=66.60 Aligned_cols=105 Identities=10% Similarity=-0.036 Sum_probs=52.4
Q ss_pred HHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHHcCCCCC-hhcHHHHHHHHH
Q 037911 491 LICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKD---VNKAEALLGFFAKKFQIYD-TESYNAVFNMFA 566 (609)
Q Consensus 491 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 566 (609)
++..+...+++++|.+.|++....+ +.+..++..+..++.+.++ +++|+.+++++......|+ ..+|..++.+|.
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 4444445555555555555555533 3344555555555554332 3345555555554321111 124455555566
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 037911 567 EDGDLSKLMELQKRFLRLGFAPNNLTCKYMIH 598 (609)
Q Consensus 567 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 598 (609)
+.|++++|++.|+++++. .|+......+..
T Consensus 84 ~~g~~~~A~~~~~~aL~~--~P~~~~A~~l~~ 113 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQT--EPQNNQAKELER 113 (122)
T ss_dssp HTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHh--CcCCHHHHHHHH
Confidence 666666666666666543 455544444333
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.20 E-value=6.5e-06 Score=62.19 Aligned_cols=88 Identities=9% Similarity=-0.045 Sum_probs=55.1
Q ss_pred HHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCH
Q 037911 492 ICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDL 571 (609)
Q Consensus 492 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 571 (609)
...+.+.|++++|+..|+++++.. +-+...|..+..++.+.|++++|+..+++..+.. +.+...|..+..+|...|++
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCH
Confidence 444556666666666666666543 2245666666666666667777776666666552 22445666666667777777
Q ss_pred HHHHHHHHHH
Q 037911 572 SKLMELQKRF 581 (609)
Q Consensus 572 ~~A~~~~~~m 581 (609)
++|++.+++.
T Consensus 101 ~~A~~~l~~~ 110 (112)
T d1hxia_ 101 NAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777666664
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.14 E-value=0.0026 Score=57.38 Aligned_cols=135 Identities=13% Similarity=0.102 Sum_probs=77.5
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCC
Q 037911 125 TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPS 204 (609)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 204 (609)
+..--..+++.|.+.|.++.|..++..+.. |..++. .|.+.++++.|++++.+. -+
T Consensus 13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~d-----------~~rl~~-------~~v~l~~~~~avd~~~k~------~~ 68 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----------FGRLAS-------TLVHLGEYQAAVDGARKA------NS 68 (336)
T ss_dssp ----------------CTTTHHHHHHHTTC-----------HHHHHH-------HHHTTTCHHHHHHHHHHH------TC
T ss_pred CcCCHHHHHHHHHHCCCHHHHHHHHHhCCC-----------HHHHHH-------HHHhhccHHHHHHHHHHc------CC
Confidence 334444566677777788777777764421 334444 567777888887777654 35
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 037911 205 IVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISS 284 (609)
Q Consensus 205 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 284 (609)
..+|..+...+.+......| .+.......+......++..|-..|.+++...+++..... -..+...++.++..
T Consensus 69 ~~~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~l 142 (336)
T d1b89a_ 69 TRTWKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAIL 142 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHH
Confidence 56777777777776665443 2223333445566667788888888888888888876543 24466677778887
Q ss_pred HHhcC
Q 037911 285 YCKKG 289 (609)
Q Consensus 285 ~~~~g 289 (609)
|++.+
T Consensus 143 yak~~ 147 (336)
T d1b89a_ 143 YSKFK 147 (336)
T ss_dssp HHTTC
T ss_pred HHHhC
Confidence 77754
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.07 E-value=1.6e-05 Score=60.74 Aligned_cols=99 Identities=14% Similarity=0.094 Sum_probs=70.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCC---HhHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 037911 454 NELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGR---SGEAVSLMDEMLESGMLPD-SQICRVLING 529 (609)
Q Consensus 454 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 529 (609)
..+++.+...+++++|.+.|+.....+. .+..++..+..++.+.++ +++|+.+++++......|+ ..++..++.+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p-~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 3466677777888888888888887653 466777777777776544 4468888888875432232 2356778888
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCh
Q 037911 530 YCMEKDVNKAEALLGFFAKKFQIYDT 555 (609)
Q Consensus 530 ~~~~g~~~~A~~~~~~~~~~~~~~~~ 555 (609)
|.+.|++++|.+.|+++.+. .|+.
T Consensus 82 y~~~g~~~~A~~~~~~aL~~--~P~~ 105 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT--EPQN 105 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHhhhHHHHHHHHHHHHh--CcCC
Confidence 88888888888888888876 4543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.06 E-value=0.0001 Score=60.17 Aligned_cols=98 Identities=9% Similarity=0.032 Sum_probs=57.8
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCc------------HHhHHHHhhccccchhHHHHhCCHHHHHHHHHH
Q 037911 128 NYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHS------------VDVFQDLISCTEDCNWAYVKVGLIRESFKTFRK 195 (609)
Q Consensus 128 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------------~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~ 195 (609)
.+.-.+..+.+.|++++|+..|++++...+..+.. ..++..+.. +|.+.|++++|+..+++
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~-------~y~k~~~~~~A~~~~~~ 87 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM-------CHLKLQAFSAAIESCNK 87 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH-------HHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHH-------HHHhhhhcccccchhhh
Confidence 34455667777778888888887777653322110 112223333 56666666666666666
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 037911 196 TLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGR 233 (609)
Q Consensus 196 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 233 (609)
+++.+ |.++.+|..+..++...|++++|...|++..+
T Consensus 88 al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 88 ALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 66654 34566666666666666666666666666655
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.04 E-value=0.00019 Score=58.46 Aligned_cols=100 Identities=12% Similarity=0.055 Sum_probs=63.2
Q ss_pred HhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCc------------HHhHHHHhhccccchhHHHHhCCHHHHHHHHH
Q 037911 127 SNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHS------------VDVFQDLISCTEDCNWAYVKVGLIRESFKTFR 194 (609)
Q Consensus 127 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------------~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~ 194 (609)
..+.-.+..+.+.|++++|...|.+++......+.. ..+|..+.. +|.+.|++++|+..++
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~-------~~~~l~~~~~Ai~~~~ 88 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM-------CYLKLREYTKAVECCD 88 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH-------HHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHH-------HHHHhhhcccchhhhh
Confidence 345556777888888888888888887653332211 112222333 5666777777777777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 037911 195 KTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRI 234 (609)
Q Consensus 195 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 234 (609)
++++.. +.+..+|..+..++...|++++|...|++..+.
T Consensus 89 ~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 89 KALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred hhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 776654 456666666666677777777777777766653
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.01 E-value=8.3e-05 Score=60.79 Aligned_cols=112 Identities=13% Similarity=-0.016 Sum_probs=72.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-------------CHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCH
Q 037911 455 ELMESLCKCDSVADALLLKDEMVDRNIK-P-------------SLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDS 520 (609)
Q Consensus 455 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p-------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 520 (609)
.....+.+.|++++|+..|++.++.... + ...+|..+..+|.+.|++++|+..+++.++.. +.+.
T Consensus 18 ~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~ 96 (170)
T d1p5qa1 18 ERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNE 96 (170)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc-ccch
Confidence 3344555556666666666555532100 0 12346667777888888888888888888753 3467
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-ChhcHHHHHHHHHhcC
Q 037911 521 QICRVLINGYCMEKDVNKAEALLGFFAKKFQIY-DTESYNAVFNMFAEDG 569 (609)
Q Consensus 521 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 569 (609)
..+..++.+|...|++++|...|+.+.+. .| |......+..+....+
T Consensus 97 ~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~P~n~~~~~~l~~~~~~~~ 144 (170)
T d1p5qa1 97 KGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIR 144 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHH
Confidence 77888888888888888888888888876 33 4455555544444333
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.00 E-value=0.0049 Score=55.55 Aligned_cols=136 Identities=13% Similarity=0.117 Sum_probs=75.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 037911 203 PSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLI 282 (609)
Q Consensus 203 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 282 (609)
||..--..+...|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+.+.+.. +..+|..+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~ 76 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVC 76 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHH
Confidence 4444444566667777777777777776543 3456666777777777777665432 556777777
Q ss_pred HHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 037911 283 SSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEG 359 (609)
Q Consensus 283 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 359 (609)
..+.+.....-| .+.......+......++..|-..|.+++...+++..... -..+...++-++..|++.+
T Consensus 77 ~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 77 FACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC
T ss_pred HHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC
Confidence 777766555433 2222333334455566777777777888777777766543 2445666777777777654
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.00 E-value=5.8e-05 Score=58.35 Aligned_cols=96 Identities=15% Similarity=0.118 Sum_probs=73.2
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCC-CC--
Q 037911 128 NYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQ-PS-- 204 (609)
Q Consensus 128 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~-- 204 (609)
.+..+.+.+.+.|+|++|+..|+++++. .|.+..++..+.. +|.+.|++++|++.++++++.... +.
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~---~p~~~~~~~~~a~-------~~~~~~~~~~A~~~~~~al~l~~~~~~~~ 75 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKEL---DPTNMTYITNQAA-------VYFEKGDYNKCRELCEKAIEVGRENREDY 75 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH-------HHHHHTCHHHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHhHHH-------HHHHcCchHHHHHHHHHHHHhCcccHHHH
Confidence 4556788899999999999999999987 4567788888887 899999999999999998763211 11
Q ss_pred ---HHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 037911 205 ---IVSCNFLLNGLLKLNCIDQCWQVYEEMGR 233 (609)
Q Consensus 205 ---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 233 (609)
..+|..+...+...+++++|++.|++...
T Consensus 76 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 76 RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 23556666677777888888888877655
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.96 E-value=0.00015 Score=58.01 Aligned_cols=98 Identities=9% Similarity=0.035 Sum_probs=52.4
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCC--c-----------HHhHHHHhhccccchhHHHHhCCHHHHHHHHH
Q 037911 128 NYCLIVHILAWNNKFSFAMKMLCELVELVKDCPH--S-----------VDVFQDLISCTEDCNWAYVKVGLIRESFKTFR 194 (609)
Q Consensus 128 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~-----------~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~ 194 (609)
.+...+..+.+.|+|.+|+..|+++++.....+. + ..++..+.. +|.+.|++++|++.++
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~-------~~~~l~~~~~Al~~~~ 91 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLAT-------CYNKNKDYPKAIDHAS 91 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHH-------HHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHH-------HHHHhcccchhhhhhh
Confidence 3444566777788888888888887765222211 1 112222232 4555555555555555
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 037911 195 KTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGR 233 (609)
Q Consensus 195 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 233 (609)
++++.+ +.++.+|..+..++...|++++|...|++..+
T Consensus 92 ~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~ 129 (153)
T d2fbna1 92 KVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS 129 (153)
T ss_dssp HHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH
Confidence 555543 34455555555555555555555555555544
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.95 E-value=4.6e-05 Score=58.97 Aligned_cols=94 Identities=13% Similarity=0.023 Sum_probs=49.6
Q ss_pred HHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCC-----hhcHHHHHH
Q 037911 490 ALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQ-IYD-----TESYNAVFN 563 (609)
Q Consensus 490 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~-----~~~~~~l~~ 563 (609)
.+...+...|++++|+..|+++++.. +.+...+..+..+|.+.|++++|...++++++... .+. ..+|..+..
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~ 87 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 34445555566666666665555532 23455555556666666666666666655554311 000 123444555
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 037911 564 MFAEDGDLSKLMELQKRFLRL 584 (609)
Q Consensus 564 ~~~~~g~~~~A~~~~~~m~~~ 584 (609)
.+...+++++|++.|++.+..
T Consensus 88 ~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 88 SYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhc
Confidence 555666666666666666543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.94 E-value=0.00014 Score=59.64 Aligned_cols=69 Identities=9% Similarity=0.047 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-----cCCCCCHH
Q 037911 207 SCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEE-----EGFDPDLV 276 (609)
Q Consensus 207 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~ 276 (609)
.+..+...+...|++++|+..++++.+.. +-+...|..++.++.+.|+.++|++.|+++.. .|+.|...
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~ 142 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 142 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence 44445555555555555555555554432 33445555555555555555555555555422 35555543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.92 E-value=0.00018 Score=57.45 Aligned_cols=77 Identities=19% Similarity=-0.004 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 037911 521 QICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMIHSL 600 (609)
Q Consensus 521 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 600 (609)
.+|..+..+|.+.|++++|++.++.+++.. +.++..|..++.++...|++++|+..|++.++. .|+.......+..+
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l--~P~n~~~~~~l~~~ 144 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELC 144 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 356678888888899999999998888763 446678888888899999999999999888855 56665555444443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.91 E-value=7.7e-06 Score=80.44 Aligned_cols=228 Identities=9% Similarity=-0.107 Sum_probs=112.2
Q ss_pred HHHHHHHHhhhcCCCCC-CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCH
Q 037911 108 SALTFFNWVKNDLEIKP-TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLI 186 (609)
Q Consensus 108 ~A~~~f~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~ 186 (609)
+|.++|+.|..- +| .+.++..+..++...|++++| +++++.. .|.......... ..-...+
T Consensus 4 eA~q~~~qA~~l---~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~---dp~~a~~~~~e~---------~Lw~~~y 65 (497)
T d1ya0a1 4 QSAQYLRQAEVL---KADMTDSKLGPAEVWTSRQALQDL---YQKMLVT---DLEYALDKKVEQ---------DLWNHAF 65 (497)
T ss_dssp HHHHHHHHHHHH---HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH---CHHHHHHHTHHH---------HHHHHHT
T ss_pred HHHHHHHHHHHc---CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHc---ChhhHHHHhHHH---------HHHHHHH
Confidence 577788887752 23 344566667777777777765 5566544 111111111110 1111123
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHH--HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 037911 187 RESFKTFRKTLDVGFQPSIVSCNFLL--NGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLE 264 (609)
Q Consensus 187 ~~A~~~~~~~~~~~~~~~~~~~~~ll--~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 264 (609)
..+++.++...+....++.......+ ......+.++.|+..+....+.. +++...+..+...+.+.|+.++|...+.
T Consensus 66 ~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 144 (497)
T d1ya0a1 66 KNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQS 144 (497)
T ss_dssp HHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CC
T ss_pred HHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHH
Confidence 55666666666543233322222111 11122344455554444433321 2345556667777777788887777766
Q ss_pred HHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 037911 265 KIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPD 344 (609)
Q Consensus 265 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~ 344 (609)
...... ...++..+...+...|++++|+..|++..+..+. +...|+.|...+...|+..+|...|.+..... .|-
T Consensus 145 ~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~ 219 (497)
T d1ya0a1 145 SSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPF 219 (497)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCC
T ss_pred HHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCC
Confidence 655431 1345666777788888888888888888776543 55678888888888888888888888877653 456
Q ss_pred HHHHHHHHHHHHHcC
Q 037911 345 IVSYNTLIFAYCKEG 359 (609)
Q Consensus 345 ~~~~~~li~~~~~~g 359 (609)
..++..|...+.+..
T Consensus 220 ~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 220 PAASTNLQKALSKAL 234 (497)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhh
Confidence 667777777665443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.85 E-value=2e-05 Score=77.41 Aligned_cols=226 Identities=10% Similarity=0.003 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChH
Q 037911 144 FAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSI-VSCNFLLNGLLKLNCID 222 (609)
Q Consensus 144 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~ 222 (609)
+|.+.|+++.+.. |...+.+..+.. .|...|++++| |++++..+ |+- ..++... .+. ...+.
T Consensus 4 eA~q~~~qA~~l~---p~~a~a~~~la~-------~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~e~-~Lw-~~~y~ 66 (497)
T d1ya0a1 4 QSAQYLRQAEVLK---ADMTDSKLGPAE-------VWTSRQALQDL---YQKMLVTD--LEYALDKKVEQ-DLW-NHAFK 66 (497)
T ss_dssp HHHHHHHHHHHHH---GGGTCSSSCSSS-------SHHHHHHHHHH---HHHHHHHC--HHHHHHHTHHH-HHH-HHHTH
T ss_pred HHHHHHHHHHHcC---CCCHHHHhhHHH-------HHHHHchHHHH---HHHHHHcC--hhhHHHHhHHH-HHH-HHHHH
Confidence 5888899988763 233444445555 78888888876 67766532 221 1222111 111 12245
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHH--HHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHH
Q 037911 223 QCWQVYEEMGRIGICPNTHTFNILTHV--FCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRI 300 (609)
Q Consensus 223 ~a~~~~~~m~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 300 (609)
.+.+.++...+....++..-....... ....+.++.++..+....+.. .++...+..+...+.+.|+.++|...++.
T Consensus 67 ~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 145 (497)
T d1ya0a1 67 NQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSS 145 (497)
T ss_dssp HHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCH
T ss_pred HHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHH
Confidence 677777777655433443322222212 223345555555554443332 23456677788888899999999888777
Q ss_pred HhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCccCH
Q 037911 301 MYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVHRGLSPDIVSYNTLIFAYCKEGKMQESKSLLYEMMGNGIYPDT 380 (609)
Q Consensus 301 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 380 (609)
.....+ ..++..+...+...|++++|...|++..+.. +-+...|+.|...+...|+..+|...|.+.+... .|-.
T Consensus 146 al~~~~---~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~ 220 (497)
T d1ya0a1 146 SCSYIC---QHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFP 220 (497)
T ss_dssp HHHHHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCH
T ss_pred HhCCCH---HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCH
Confidence 655321 3567778889999999999999999998862 3356789999999999999999999999988763 4566
Q ss_pred HHHHHHHHHHHc
Q 037911 381 FTCQIIVQGYGK 392 (609)
Q Consensus 381 ~~~~~l~~~~~~ 392 (609)
.++..|...+.+
T Consensus 221 ~a~~nL~~~~~~ 232 (497)
T d1ya0a1 221 AASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777776654
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.85 E-value=0.00012 Score=59.90 Aligned_cols=95 Identities=12% Similarity=0.121 Sum_probs=47.0
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHhhC-------------CCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHH
Q 037911 131 LIVHILAWNNKFSFAMKMLCELVELVK-------------DCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTL 197 (609)
Q Consensus 131 ~l~~~~~~~~~~~~A~~~~~~~~~~~~-------------~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 197 (609)
.....+...|++++|+..|.++++... ..|.....+..+.. +|.+.|++++|+..+++++
T Consensus 32 ~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~-------~~~~~~~~~~Ai~~~~~al 104 (169)
T d1ihga1 32 NIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGA-------CKLKMSDWQGAVDSCLEAL 104 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHH-------HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHH-------HHHhhcccchhhhhhhhhh
Confidence 345556677777777777776654310 00112222233333 4455555555555555555
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 037911 198 DVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGR 233 (609)
Q Consensus 198 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 233 (609)
+.. +.++.+|..+..++...|++++|++.|++..+
T Consensus 105 ~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 105 EID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp TTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence 443 33444555555555555555555555555444
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.78 E-value=0.00037 Score=57.13 Aligned_cols=124 Identities=8% Similarity=-0.015 Sum_probs=83.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 037911 455 ELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEK 534 (609)
Q Consensus 455 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 534 (609)
.........|++++|...|.+.+... +... +......+-+...-..+.. .....+..++..+.+.|
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~--------l~~~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g 81 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALREW--RGPV--------LDDLRDFQFVEPFATALVE----DKVLAHTAKAEAEIACG 81 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC--CSST--------TGGGTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC--cccc--------cccCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCC
Confidence 34455667788888888888877642 1110 0000111111111111111 02345678899999999
Q ss_pred CHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHH-----HcCCCCChhhH
Q 037911 535 DVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFL-----RLGFAPNNLTC 593 (609)
Q Consensus 535 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~~ 593 (609)
++++|...++.+.+.. +.+...|..++.+|...|+..+|++.|+++. +.|+.|...+-
T Consensus 82 ~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~ 144 (179)
T d2ff4a2 82 RASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 144 (179)
T ss_dssp CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred CchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence 9999999999999774 4466889999999999999999999999984 36999987663
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.73 E-value=9.9e-05 Score=58.37 Aligned_cols=73 Identities=11% Similarity=0.044 Sum_probs=54.1
Q ss_pred HHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHH----------HhCCHHHHHHHHHHHHhCCCCCCH
Q 037911 136 LAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYV----------KVGLIRESFKTFRKTLDVGFQPSI 205 (609)
Q Consensus 136 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----------~~g~~~~A~~~~~~~~~~~~~~~~ 205 (609)
|-+.+.|++|+..++.+++. .|.+..++..+.. ++. ..+.+++|+..|+++++.+ +.+.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~---~P~~~~~~~~~g~-------~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~ 75 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKS---NPLDADNLTRWGG-------VLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKD 75 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHH-------HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHccHHHHHHHHHHHHhh---CCcchHHHHHHHH-------HHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhh
Confidence 44556789999999999987 5777888877776 454 3455678888888888765 5667
Q ss_pred HHHHHHHHHHHhcC
Q 037911 206 VSCNFLLNGLLKLN 219 (609)
Q Consensus 206 ~~~~~ll~~~~~~~ 219 (609)
.+|..+..+|...|
T Consensus 76 ~a~~~lG~~y~~~g 89 (145)
T d1zu2a1 76 EAVWCIGNAYTSFA 89 (145)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHcc
Confidence 78887777776554
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.69 E-value=0.00062 Score=55.26 Aligned_cols=110 Identities=11% Similarity=0.010 Sum_probs=83.1
Q ss_pred HHhcCCChhHHHHHHHHhhhcCCCCC-------------CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHh
Q 037911 99 LLRCQSDSVSALTFFNWVKNDLEIKP-------------TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDV 165 (609)
Q Consensus 99 l~~~~~~~~~A~~~f~~~~~~~~~~~-------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 165 (609)
.....|++..|+..|+.+..-....+ ....|.-+..+|.+.|++++|+..++.+++. .|.+...
T Consensus 24 ~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l---~p~~~~a 100 (168)
T d1kt1a1 24 VYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL---DSANEKG 100 (168)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc---ccchHHH
Confidence 34456899999999988885322111 1234556788899999999999999999987 5677888
Q ss_pred HHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 037911 166 FQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLN 219 (609)
Q Consensus 166 ~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 219 (609)
+..+.. +|...|++++|+..|+++++.. |.+..+...+-....+.+
T Consensus 101 ~~~~~~-------~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~~~~ 146 (168)
T d1kt1a1 101 LYRRGE-------AQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQKKAK 146 (168)
T ss_dssp HHHHHH-------HHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHH-------HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHH
Confidence 888888 8999999999999999999875 456666655554444433
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.67 E-value=0.0003 Score=57.32 Aligned_cols=62 Identities=6% Similarity=-0.204 Sum_probs=33.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037911 522 ICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRL 584 (609)
Q Consensus 522 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 584 (609)
.+..+..++.+.|++++|+..++.+++.. +.++..|..++.+|...|++++|++.|+++++.
T Consensus 79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 79 CVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 34445555555555555555555555432 223345555555555555555555555555543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.62 E-value=0.00019 Score=56.72 Aligned_cols=74 Identities=12% Similarity=0.068 Sum_probs=51.2
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNC----------IDQCWQVYEEMGRIGICPNTHTFNILTH 248 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 248 (609)
.|-+.+.+++|+..|+..++.. |.+..++..+..++...++ +++|+..|++..+.. +.+..+|..+..
T Consensus 6 ~~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~ 83 (145)
T d1zu2a1 6 EFDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGN 83 (145)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHH
Confidence 4677888999999999999876 6778888888888775433 456666666666532 334556666666
Q ss_pred HHHHcC
Q 037911 249 VFCKNG 254 (609)
Q Consensus 249 ~~~~~g 254 (609)
+|...|
T Consensus 84 ~y~~~g 89 (145)
T d1zu2a1 84 AYTSFA 89 (145)
T ss_dssp HHHHHH
T ss_pred HHHHcc
Confidence 555443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.60 E-value=7.8e-05 Score=65.62 Aligned_cols=121 Identities=12% Similarity=0.079 Sum_probs=57.5
Q ss_pred hCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 037911 138 WNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLK 217 (609)
Q Consensus 138 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 217 (609)
+.|++++|+..+++.++. .|.+...+..++. .|+..|++++|++.|+...+.. +-+...+..+...+..
T Consensus 8 ~~G~l~eAl~~l~~al~~---~P~d~~ar~~La~-------lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a 76 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKA---SPKDASLRSSFIE-------LLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKA 76 (264)
T ss_dssp TTTCHHHHHHHHHHHHHT---CTTCHHHHHHHHH-------HHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHH-------HHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHh
Confidence 456666666666666654 4555666666666 6666666666666666666543 2223333333333322
Q ss_pred cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 037911 218 LNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEE 269 (609)
Q Consensus 218 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 269 (609)
.+..+++..-.......+-+++...+......+...|+.++|.+.++++.+.
T Consensus 77 ~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 77 AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 2222222111111011111112222333344455556666666666665544
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.54 E-value=0.00041 Score=49.92 Aligned_cols=79 Identities=11% Similarity=0.082 Sum_probs=63.6
Q ss_pred CHHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCCC----CCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCC
Q 037911 125 TSSNYCLIVHILAWNNKFSFAMKMLCELVELVKDC----PHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVG 200 (609)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 200 (609)
++..+..++.++.+.|++++|+..|+++++..+.. +....++..+.. +|.+.|++++|+..++++++..
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~-------~~~~~g~~~~A~~~y~~aL~l~ 76 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSY-------AVYQQGDLDKALLLTKKLLELD 76 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhh-------HHHhcCChHHHHHHHHHHHHhC
Confidence 56777889999999999999999999998874432 234567888887 8999999999999999999875
Q ss_pred CCCCHHHHHHH
Q 037911 201 FQPSIVSCNFL 211 (609)
Q Consensus 201 ~~~~~~~~~~l 211 (609)
|-+..+++.+
T Consensus 77 -P~~~~a~~Nl 86 (95)
T d1tjca_ 77 -PEHQRANGNL 86 (95)
T ss_dssp -TTCHHHHHHH
T ss_pred -cCCHHHHHHH
Confidence 4455566554
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.45 E-value=0.0014 Score=52.25 Aligned_cols=100 Identities=12% Similarity=0.061 Sum_probs=67.5
Q ss_pred HHhHHHH--HHHHHhCCChhHHHHHHHHHHHhhCCCCC---------cHHhHHHHhhccccchhHHHHhCCHHHHHHHHH
Q 037911 126 SSNYCLI--VHILAWNNKFSFAMKMLCELVELVKDCPH---------SVDVFQDLISCTEDCNWAYVKVGLIRESFKTFR 194 (609)
Q Consensus 126 ~~~~~~l--~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~ 194 (609)
..+|..+ +..+...|+|++|+..|++.++..+..|. ....|..+.. +|...|++++|++.++
T Consensus 7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~-------~~~~lg~~~~A~~~~~ 79 (156)
T d2hr2a1 7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAE-------ALAGLRSFDEALHSAD 79 (156)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHH-------HHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHH-------HHHHcCccchhhHhhh
Confidence 3456655 66777889999999999999987555433 1345666666 8999999999999999
Q ss_pred HHHhCC-----CCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 037911 195 KTLDVG-----FQPS-----IVSCNFLLNGLLKLNCIDQCWQVYEEMG 232 (609)
Q Consensus 195 ~~~~~~-----~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 232 (609)
+.++.. ..++ ..+++.+..+|...|++++|.+.|++..
T Consensus 80 ~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 80 KALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 887521 1111 1234455566666666666666666543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.40 E-value=0.00013 Score=64.11 Aligned_cols=123 Identities=7% Similarity=-0.028 Sum_probs=75.4
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCChH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPN-THTFNILTHVFCKNGDVD 257 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~ 257 (609)
...+.|++++|+..+++.++.. +.+...+..+...++..|++++|.+.|+...+. .|+ ...+..+...+...+..+
T Consensus 5 ~aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 5 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhccccH
Confidence 3456788999999999888865 677888888888899999999999888888774 354 334433433333332222
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhC
Q 037911 258 KVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRR 304 (609)
Q Consensus 258 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 304 (609)
++..-.......+-+++...+......+...|+.++|...++++.+.
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 22111111011111122233344455667778888888888777654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.91 E-value=0.0022 Score=51.05 Aligned_cols=90 Identities=12% Similarity=0.035 Sum_probs=68.3
Q ss_pred cCCChhHHHHHHHHhhhcCCCCCC----------HHhHHHHHHHHHhCCChhHHHHHHHHHHHhhCC----CCC----cH
Q 037911 102 CQSDSVSALTFFNWVKNDLEIKPT----------SSNYCLIVHILAWNNKFSFAMKMLCELVELVKD----CPH----SV 163 (609)
Q Consensus 102 ~~~~~~~A~~~f~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~----~~ 163 (609)
..|+++.|+..|+.++......|+ ..+|+.+..+|...|++++|...+++.++..+. .+. ..
T Consensus 21 ~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 100 (156)
T d2hr2a1 21 VAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWI 100 (156)
T ss_dssp HHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhH
Confidence 458999999999999863222222 467889999999999999999999999865221 111 12
Q ss_pred HhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHh
Q 037911 164 DVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLD 198 (609)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 198 (609)
..+..+.. +|...|++++|++.|+++++
T Consensus 101 ~a~~~~g~-------~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 101 SAVYSRAL-------ALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHH-------HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhhhHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 24555666 89999999999999999875
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.61 E-value=0.0089 Score=42.49 Aligned_cols=60 Identities=17% Similarity=0.172 Sum_probs=27.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC-----CCCC-HHhHHHHHHHHHhcCCHhHHHHHHHHHhhC
Q 037911 245 ILTHVFCKNGDVDKVNGFLEKIEEEG-----FDPD-LVTYNTLISSYCKKGRLNDAFYLYRIMYRR 304 (609)
Q Consensus 245 ~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 304 (609)
.+...+.+.|++++|+..|++..+.. ..++ ..+++.+..++.+.|++++|++.++++++.
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 34444455555555555554443320 0011 234455555555555555555555555544
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.48 E-value=0.052 Score=41.22 Aligned_cols=111 Identities=14% Similarity=0.059 Sum_probs=67.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHH
Q 037911 465 SVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAVSLMDEMLESGMLPDSQICRVLINGYCM----EKDVNKAE 540 (609)
Q Consensus 465 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~ 540 (609)
++++|.++|++..+.|. ...+..|. .....+.++|++++++..+.| ++.....|...|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g~---~~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNE---MFGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTTC---TTHHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCC---hhhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 56667777777666652 22222222 233456777777777777665 44455555555543 45677888
Q ss_pred HHHHHHHHcCCCCChhcHHHHHHHHHh----cCCHHHHHHHHHHHHHcCC
Q 037911 541 ALLGFFAKKFQIYDTESYNAVFNMFAE----DGDLSKLMELQKRFLRLGF 586 (609)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~ 586 (609)
++|++..+.+ ++.....|...|.. ..+.++|.++|++..+.|.
T Consensus 80 ~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 80 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 8888777654 34445556655554 3477788888888777664
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.22 E-value=0.095 Score=37.97 Aligned_cols=140 Identities=11% Similarity=-0.015 Sum_probs=90.5
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHhHHH
Q 037911 426 CQDNRPFAATSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRSGEAV 505 (609)
Q Consensus 426 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 505 (609)
.-.|..++..+++.+.... .+..-||.+|--....-+-+...+.++.+-+. -| ....++.....
T Consensus 13 ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FD----------ls~C~Nlk~vv 76 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSVV 76 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHHH
T ss_pred HHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh---cC----------chhhhcHHHHH
Confidence 3456666666666666443 24455555555444444544444444443321 11 12334444444
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037911 506 SLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLG 585 (609)
Q Consensus 506 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 585 (609)
..+-.+ .-++..++..++...++|+-+.-.++.+.+.+. ..+++...-.+..+|.+.|...++-+++.++.++|
T Consensus 77 ~C~~~~-----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 77 ECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 444333 234556677888889999999999998887764 47888889999999999999999999999999988
Q ss_pred CC
Q 037911 586 FA 587 (609)
Q Consensus 586 ~~ 587 (609)
++
T Consensus 151 ~K 152 (161)
T d1wy6a1 151 EK 152 (161)
T ss_dssp CH
T ss_pred HH
Confidence 64
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.22 E-value=0.51 Score=44.29 Aligned_cols=204 Identities=8% Similarity=-0.064 Sum_probs=116.7
Q ss_pred CChHHHHHHHHHHHHCCCccCHHHH----HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 037911 359 GKMQESKSLLYEMMGNGIYPDTFTC----QIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAA 434 (609)
Q Consensus 359 g~~~~A~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 434 (609)
.+.+.|..++......... +...+ ..+.......+..+.+...+......+ .+.......+......+++..+
T Consensus 228 ~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~ 304 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (450)
T ss_dssp HCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHH
Confidence 5677777777776553211 22222 122223344566677777777666553 3444444455555666777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCH-hHHHHHHHHHHH
Q 037911 435 TSLLERIGQDGYVPSLEIYNELMESLCKCDSVADALLLKDEMVDRNIKPSLSTYRALICCFCGIGRS-GEAVSLMDEMLE 513 (609)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~ 513 (609)
...+..+... ......-.--+..++...|+.++|..+|...... ++ -|..|... +.|.. .-.. ..
T Consensus 305 ~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~--fYG~LAa~--~Lg~~~~~~~------~~ 370 (450)
T d1qsaa1 305 NTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--FYPMVAAQ--RIGEEYELKI------DK 370 (450)
T ss_dssp HHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--HHHHHHHH--HTTCCCCCCC------CC
T ss_pred HHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC--hHHHHHHH--HcCCCCCCCc------CC
Confidence 7777766322 2223444455677788888888888888877642 33 33333321 11211 0000 00
Q ss_pred CCCCCCHH----HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037911 514 SGMLPDSQ----ICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFL 582 (609)
Q Consensus 514 ~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 582 (609)
....+... .-..-+..+...|....|...|..+... .+......+.....+.|.++.|+....+..
T Consensus 371 ~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 371 APQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp CCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred CCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 00000000 0123356677889999999999888753 356667778888889999999998877763
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.08 E-value=0.096 Score=39.61 Aligned_cols=78 Identities=10% Similarity=0.156 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCChHHHH
Q 037911 185 LIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCK----NGDVDKVN 260 (609)
Q Consensus 185 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~ 260 (609)
++++|+++|++..+.|.. ..+..|.. ....+.++|.+.+++..+.| +......|...|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g~~---~a~~~l~~--~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM---FGCLSLVS--NSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT---THHHHHHT--CTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCCh---hhhhhhcc--ccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 567777777777776522 22222221 22345556666666555543 33333334433332 23345555
Q ss_pred HHHHHHHHcC
Q 037911 261 GFLEKIEEEG 270 (609)
Q Consensus 261 ~~~~~~~~~~ 270 (609)
++|++..+.|
T Consensus 80 ~~~~~aa~~g 89 (133)
T d1klxa_ 80 QYYSKACGLN 89 (133)
T ss_dssp HHHHHHHHTT
T ss_pred HHHhhhhccC
Confidence 5555554443
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.52 E-value=0.27 Score=35.61 Aligned_cols=142 Identities=15% Similarity=0.144 Sum_probs=94.7
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHH
Q 037911 179 AYVKVGLIRESFKTFRKTLDVGFQPSIVSCNFLLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDK 258 (609)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (609)
-+.-.|.+++..++..+... ..+..-||-++.-....-+-+...++++..-+. .|. .+++++..
T Consensus 11 k~ildG~ve~Gveii~k~~~---ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDl----------s~C~Nlk~ 74 (161)
T d1wy6a1 11 KFLLDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKS 74 (161)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHH
T ss_pred HHHHhhhHHhHHHHHHHHcc---cCCccccceeeeecccccchHHHHHHHHHHhhh---cCc----------hhhhcHHH
Confidence 34567888999999988887 457778888887777777777777777766432 111 12333333
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHhHHHHHHHHHhhCCccCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037911 259 VNGFLEKIEEEGFDPDLVTYNTLISSYCKKGRLNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCKEGKVREAHQLFHRMVH 338 (609)
Q Consensus 259 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 338 (609)
...-+-.+- .+...++..++....+|+-++-.++++++.+. -+|++...-.+..+|.+.|+..++.+++.+..+
T Consensus 75 vv~C~~~~n-----~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe 148 (161)
T d1wy6a1 75 VVECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACK 148 (161)
T ss_dssp HHHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 333332221 23455666677777888888888888887664 345667777778888888888888888888888
Q ss_pred CCCC
Q 037911 339 RGLS 342 (609)
Q Consensus 339 ~g~~ 342 (609)
.|+.
T Consensus 149 ~G~K 152 (161)
T d1wy6a1 149 KGEK 152 (161)
T ss_dssp TTCH
T ss_pred HhHH
Confidence 7754
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.68 E-value=0.16 Score=37.21 Aligned_cols=80 Identities=13% Similarity=-0.064 Sum_probs=51.3
Q ss_pred CCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHHcCCCCCh-hcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh
Q 037911 517 LPDSQICRVLINGYCMEK---DVNKAEALLGFFAKKFQIYDT-ESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLT 592 (609)
Q Consensus 517 ~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 592 (609)
.|+..+--.+.+++++.. +.++++.+++.+.+.. +.+. ..+..|.-+|.+.|++++|.+.++.+++. .|+..-
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i--eP~n~q 108 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNKQ 108 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc--CCCcHH
Confidence 355666666677777654 4557777777777552 2222 45566777788888888888888888744 666655
Q ss_pred HHHHHHH
Q 037911 593 CKYMIHS 599 (609)
Q Consensus 593 ~~~ll~~ 599 (609)
...+...
T Consensus 109 A~~L~~~ 115 (124)
T d2pqrb1 109 VGALKSM 115 (124)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5444443
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.85 E-value=2 Score=31.08 Aligned_cols=67 Identities=15% Similarity=0.097 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 037911 202 QPSIVSCNFLLNGLLKLN---CIDQCWQVYEEMGRIGICPN-THTFNILTHVFCKNGDVDKVNGFLEKIEEE 269 (609)
Q Consensus 202 ~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 269 (609)
.+++.+--....++++.. ++++++.++++..+.+ +.+ ...+-.|..+|.+.|++++|...++.+.+.
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 455555555566666543 3456777777776532 222 245556666777777777777777777766
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=90.52 E-value=6.5 Score=36.22 Aligned_cols=353 Identities=10% Similarity=0.001 Sum_probs=181.4
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHhhCCCCCcHHhHHHHhhccccchhHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 037911 131 LIVHILAWNNKFSFAMKMLCELVELVKDCPHSVDVFQDLISCTEDCNWAYVKVGLIRESFKTFRKTLDVGFQPSIVSCNF 210 (609)
Q Consensus 131 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 210 (609)
.-+..+++.++++.... ..+..|.+...-..... +....|+.++|...+..+-..| ....
T Consensus 77 ~~l~~L~~~~~w~~~~~-------~~~~~p~~~~~~c~~~~-------A~~~~g~~~~a~~~~~~lW~~~-~~~p----- 136 (450)
T d1qsaa1 77 RFVNELARREDWRGLLA-------FSPEKPGTTEAQCNYYY-------AKWNTGQSEEAWQGAKELWLTG-KSQP----- 136 (450)
T ss_dssp HHHHHHHHTTCHHHHHH-------HCCSCCSSHHHHHHHHH-------HHHHTTCHHHHHHHHHHHHSCS-SCCC-----
T ss_pred HHHHHHHhccCHHHHHH-------hccCCCCCHHHHHHHHH-------HHHHcCChHHHHHHHHHHHhcC-CCCc-----
Confidence 34566777777654332 22344555555445555 6777888888887777665544 1222
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 037911 211 LLNGLLKLNCIDQCWQVYEEMGRIGICPNTHTFNILTHVFCKNGDVDKVNGFLEKIEEEGFDPDLVTYNTLISSYCKKGR 290 (609)
Q Consensus 211 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 290 (609)
+.+..+|..+.+.| ..+...+-.-+......|+...|..+...+... ........+......
T Consensus 137 -----------~~c~~l~~~~~~~~-~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~----~~~~~~a~~~l~~~p-- 198 (450)
T d1qsaa1 137 -----------NACDKLFSVWRASG-KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPAD----YQTIASAIISLANNP-- 198 (450)
T ss_dssp -----------THHHHHHHHHHHTT-CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGG----GHHHHHHHHHHHHCG--
T ss_pred -----------hHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChhhHHHHHhhCChh----HHHHHHHHHHHHhCh--
Confidence 22333334333333 233333334444555667777666665543211 222333333333222
Q ss_pred HhHHHHHHHHHhhCCccCCHhhHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH----HHHHcCChHHH
Q 037911 291 LNDAFYLYRIMYRRNVLPDLVTYTTLMNGLCK--EGKVREAHQLFHRMVHRGLSPDIVSYNTLIF----AYCKEGKMQES 364 (609)
Q Consensus 291 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~----~~~~~g~~~~A 364 (609)
..+...... .. ++......+..++.+ ..+.+.|..++......... +..-...+-. .....+..+.+
T Consensus 199 -~~~~~~~~~---~~--~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a 271 (450)
T d1qsaa1 199 -NTVLTFART---TG--ATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQ 271 (450)
T ss_dssp -GGHHHHHHH---SC--CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHH
T ss_pred -HhHHHHHhc---CC--CChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHH
Confidence 222221111 11 122222222222222 24677777777776654222 2222222222 22234556777
Q ss_pred HHHHHHHHHCCCccCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037911 365 KSLLYEMMGNGIYPDTFTCQIIVQGYGKEGRLLSALNLVVELQRFGVSISRDIYDYLIVALCQDNRPFAATSLLERIGQD 444 (609)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 444 (609)
..++......+. +.......+......+++..+...+..|.... .-...-..-+..++...|+.++|...+......
T Consensus 272 ~~~~~~~~~~~~--~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~ 348 (450)
T d1qsaa1 272 AKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ 348 (450)
T ss_dssp HHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHhhccccc--chHHHHHHHHHHHHcCChHHHHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC
Confidence 777776665532 34444444555566788888888887765432 223444556677888888888888888877532
Q ss_pred CCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCC-HHH---HHHHHHHHhcCCCHhHHHHHHHHHHHCCCCCC
Q 037911 445 GYVPSLEIYNELMESLCKCDSV-ADALLLKDEMVDRNIKPS-LST---YRALICCFCGIGRSGEAVSLMDEMLESGMLPD 519 (609)
Q Consensus 445 ~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~-~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~ 519 (609)
++ .|..|...- .|.. .-.. ......+. ... -...+..+...|+..+|...|..+... .+
T Consensus 349 ---~~--fYG~LAa~~--Lg~~~~~~~------~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~ 412 (450)
T d1qsaa1 349 ---RG--FYPMVAAQR--IGEEYELKI------DKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KS 412 (450)
T ss_dssp ---CS--HHHHHHHHH--TTCCCCCCC------CCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CC
T ss_pred ---CC--hHHHHHHHH--cCCCCCCCc------CCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CC
Confidence 33 233332211 1210 0000 00000000 000 112345567789999999988888753 25
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 037911 520 SQICRVLINGYCMEKDVNKAEALLGFFA 547 (609)
Q Consensus 520 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 547 (609)
......+.....+.|.++.|+.......
T Consensus 413 ~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 413 KTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 5666778888889999999988776654
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.12 E-value=1.9 Score=29.41 Aligned_cols=63 Identities=17% Similarity=0.195 Sum_probs=48.5
Q ss_pred CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCChhcHHHHHH
Q 037911 500 RSGEAVSLMDEMLESGMLPDSQICRVLINGYCMEKDVNKAEALLGFFAKKFQIYDTESYNAVFN 563 (609)
Q Consensus 500 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 563 (609)
+.-++.+-++.+....+.|++.+..+.+++|.+.+++..|.++|+..+.+.. .+...|..++.
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~-~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG-PHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc-CcHHHHHHHHH
Confidence 5567777788888788889999999999999999999999999988876542 34456666543
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.13 E-value=2.3 Score=28.98 Aligned_cols=64 Identities=9% Similarity=0.089 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHHHcCCCCChhcHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 037911 535 DVNKAEALLGFFAKKFQIYDTESYNAVFNMFAEDGDLSKLMELQKRFLRLGFAPNNLTCKYMIHS 599 (609)
Q Consensus 535 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 599 (609)
|.-++.+-++.+......|++.+..+.+++|.+.+++.-|+++++-.+.+ ..++...|..+++.
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yilqe 84 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE 84 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHHHH
Confidence 33344444444444444555555555555555555555555555555433 22234445444443
|