Citrus Sinensis ID: 037914

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80----
Protein Sequence
MKQKNINGFGRTGNRKEASRPQWQGRNNNHWRWRLCCHVENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDEATPVAV
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHccccccccEEEEccccHHHHHHHccccccccEEEEccccccEEEccccccccccEEEccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccEEEEEEcHEEccEHccHHHccEEccccHHHHHHHcccccHHHHcccEcccccc
Coil and Loop (DISEMBL)
mkqkningfgrtgnrkeasrpqwqgrnnnhWRWRLCCHVENVGVASVMNhistsgagggaglelpegkelpvvvafdeatpvav
Flexible Loop (DISEMBL)
mkqkningfgrtgnrkeasrpqwqgrnnnhWRWRLCCHVENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDEATPVAV
Low Complexity Region (SEG)
MKQKNINGFGRTGNRKEASRPQWQGRNNNHWRWRLCCHVENVGVASVMNHISTSgagggaglelpegkelpvvvAFDEATPVAV
Disordered region (IsUnstruct)
**************************NNNHWRWRLCCHVENVGVASVMNHISTSGAGGGAGL*******LPVVVAF********
Disordered Region (DISOPRED)
******N*FGRTGNRKEASRPQWQGRNNNHWRWRLCCHVENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDEATPV**
Disordered Region (DISEMBL)
MKQKNINGFG************WQGRNNNHWRWRLCCHVENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDEATPVAV
Disordered Region (DISPRO)
**********************WQGRNNNHWRWRLCCHVENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDEAT****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKQKNINGFGRTGNRKEASRPQWQGRNNNHWRWRLCCHVENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDEATPVAV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	84	2.2.26 [Sep-21-2011]
P50318	478	Phosphoglycerate kinase 2	no	no	0.511	0.089	0.739	9e-10
Q9LD57	481	Phosphoglycerate kinase 1	no	no	0.511	0.089	0.695	5e-09
Q42961	481	Phosphoglycerate kinase,	N/A	no	0.511	0.089	0.723	9e-09
P29409	433	Phosphoglycerate kinase,	N/A	no	0.511	0.099	0.652	3e-08
P12782	480	Phosphoglycerate kinase,	N/A	no	0.452	0.079	0.731	7e-08
B8HXQ5	406	Phosphoglycerate kinase O	yes	no	0.452	0.093	0.682	9e-07
B1XNQ1	398	Phosphoglycerate kinase O	yes	no	0.452	0.095	0.682	1e-06
Q31P73	402	Phosphoglycerate kinase O	yes	no	0.452	0.094	0.682	5e-06
Q5N4Z6	402	Phosphoglycerate kinase O	yes	no	0.452	0.094	0.682	5e-06
Q8DGP7	400	Phosphoglycerate kinase O	yes	no	0.452	0.095	0.634	5e-06

>sp|P50318|PGKH2_ARATH Phosphoglycerate kinase 2, chloroplastic OS=Arabidopsis thaliana GN=At1g56190 PE=1 SV=3

 Score = 62.0 bits (149), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 34/46 (73%), Positives = 35/46 (76%), Gaps = 3/46 (6%)

Query: 39  VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDEATPVAV 84
           VE VGVA VM+HIST   GGGA LEL EGK LP VVA DEATPV V
Sbjct: 436 VEKVGVAGVMSHIST---GGGASLELLEGKVLPGVVALDEATPVTV 478

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 2EC: .EC: 3

>sp|Q9LD57|PGKH1_ARATH Phosphoglycerate kinase 1, chloroplastic OS=Arabidopsis thaliana GN=PGK1 PE=1 SV=1

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/46 (69%), Positives = 34/46 (73%), Gaps = 3/46 (6%)

Query: 39  VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDEATPVAV 84
           VE VGVA VM+HIST   GGGA LEL EGK LP V+A DEA PV V
Sbjct: 439 VEKVGVAGVMSHIST---GGGASLELLEGKVLPGVIALDEAIPVTV 481

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 2

EC: .

EC: 3

>sp|Q42961|PGKH_TOBAC Phosphoglycerate kinase, chloroplastic OS=Nicotiana tabacum PE=2 SV=1

 Score = 58.9 bits (141), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 34/47 (72%), Positives = 36/47 (76%), Gaps = 4/47 (8%)

Query: 39  VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDEA-TPVAV 84
           VE VGVASVM+HIST   GGGA LEL EGK LP V+A DEA  PVAV
Sbjct: 438 VEKVGVASVMSHIST---GGGASLELLEGKVLPGVIALDEADAPVAV 481

Nicotiana tabacum (taxid: 4097)

EC: 2

EC: .

EC: 7

EC: .

EC: 2

EC: .

EC: 3

>sp|P29409|PGKH_SPIOL Phosphoglycerate kinase, chloroplastic (Fragment) OS=Spinacia oleracea PE=2 SV=2

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/46 (65%), Positives = 34/46 (73%), Gaps = 3/46 (6%)

Query: 39  VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDEATPVAV 84
           VE VGVA  M+HIST   GGGA LEL EGK+LP V+A +EA PV V
Sbjct: 391 VEKVGVAEAMSHIST---GGGASLELLEGKQLPGVLALNEADPVPV 433

Spinacia oleracea (taxid: 3562)

EC: 2

EC: .

EC: 7

EC: .

EC: 2

EC: .

EC: 3

>sp|P12782|PGKH_WHEAT Phosphoglycerate kinase, chloroplastic OS=Triticum aestivum PE=2 SV=1

 Score = 55.8 bits (133), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 30/41 (73%), Positives = 31/41 (75%), Gaps = 3/41 (7%)

Query: 39  VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDEA 79
           VE VGVA VM+HIST   GGGA LEL EGKELP VVA DE 
Sbjct: 435 VEKVGVADVMSHIST---GGGASLELLEGKELPGVVALDEG 472

Triticum aestivum (taxid: 4565)

EC: 2

EC: .

EC: 7

EC: .

EC: 2

EC: .

EC: 3

>sp|B8HXQ5|PGK_CYAP4 Phosphoglycerate kinase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=pgk PE=3 SV=1

 Score = 52.4 bits (124), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 28/41 (68%), Positives = 31/41 (75%), Gaps = 3/41 (7%)

Query: 39  VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDEA 79
           VE VGVA  M+HIST   GGGA LEL EGKELP +VA D+A
Sbjct: 369 VEKVGVAEQMSHIST---GGGASLELLEGKELPGIVALDDA 406

Cyanothece sp. (strain PCC 7425 / ATCC 29141) (taxid: 395961)

EC: 2

EC: .

EC: 7

EC: .

EC: 2

EC: .

EC: 3

>sp|B1XNQ1|PGK_SYNP2 Phosphoglycerate kinase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=pgk PE=3 SV=1

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/41 (68%), Positives = 31/41 (75%), Gaps = 3/41 (7%)

Query: 39  VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDEA 79
           VE VGVA  M+HIST   GGGA LEL EGKELP +VA D+A
Sbjct: 361 VEKVGVADKMSHIST---GGGASLELLEGKELPGIVALDDA 398

Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) (taxid: 32049)

EC: 2

EC: .

EC: 7

EC: .

EC: 2

EC: .

EC: 3

>sp|Q31P73|PGK_SYNE7 Phosphoglycerate kinase OS=Synechococcus elongatus (strain PCC 7942) GN=pgk PE=3 SV=1

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/41 (68%), Positives = 30/41 (73%), Gaps = 3/41 (7%)

Query: 39  VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDEA 79
           VE VGVAS M+HIST   GGGA LEL EGK LP V A D+A
Sbjct: 364 VEKVGVASEMSHIST---GGGASLELLEGKVLPGVAALDDA 401

Synechococcus elongatus (strain PCC 7942) (taxid: 1140)

EC: 2

EC: .

EC: 7

EC: .

EC: 2

EC: .

EC: 3

>sp|Q5N4Z6|PGK_SYNP6 Phosphoglycerate kinase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=pgk PE=3 SV=1

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/41 (68%), Positives = 30/41 (73%), Gaps = 3/41 (7%)

Query: 39  VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDEA 79
           VE VGVAS M+HIST   GGGA LEL EGK LP V A D+A
Sbjct: 364 VEKVGVASEMSHIST---GGGASLELLEGKVLPGVAALDDA 401

Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (taxid: 269084)

EC: 2

EC: .

EC: 7

EC: .

EC: 2

EC: .

EC: 3

>sp|Q8DGP7|PGK_THEEB Phosphoglycerate kinase OS=Thermosynechococcus elongatus (strain BP-1) GN=pgk PE=3 SV=1

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 26/41 (63%), Positives = 30/41 (73%), Gaps = 3/41 (7%)

Query: 39  VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDEA 79
           VE VGVA  M+HIST   GGGA LEL EGK+LP + A D+A
Sbjct: 363 VEKVGVADRMSHIST---GGGASLELLEGKQLPGIAALDDA 400

Thermosynechococcus elongatus (strain BP-1) (taxid: 197221)

EC: 2

EC: .

EC: 7

EC: .

EC: 2

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	84
217074162	260	unknown [Medicago truncatula]	0.511	0.165	0.760	2e-09
255544584	479	phosphoglycerate kinase, putative [Ricin	0.511	0.089	0.760	2e-09
357451629	479	Phosphoglycerate kinase [Medicago trunca	0.511	0.089	0.760	2e-09
356525742	485	PREDICTED: phosphoglycerate kinase, chlo	0.511	0.088	0.760	3e-09
356557028	483	PREDICTED: phosphoglycerate kinase, chlo	0.511	0.089	0.760	3e-09
359494603	392	PREDICTED: phosphoglycerate kinase, chlo	0.511	0.109	0.760	3e-09
297736144	405	unnamed protein product [Vitis vinifera]	0.511	0.106	0.760	3e-09
225464995	478	PREDICTED: phosphoglycerate kinase, chlo	0.511	0.089	0.760	3e-09
242090961	483	hypothetical protein SORBIDRAFT_09g02434	0.511	0.089	0.760	6e-09
449444282	485	PREDICTED: phosphoglycerate kinase, chlo	0.511	0.088	0.739	6e-09

>gi|217074162|gb|ACJ85441.1| unknown [Medicago truncatula]

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/46 (76%), Positives = 37/46 (80%), Gaps = 3/46 (6%)

Query: 39  VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDEATPVAV 84
           VE VGVA VM+HIST   GGGA LEL EGKELP V+A DEATPVAV
Sbjct: 218 VEKVGVADVMSHIST---GGGASLELLEGKELPGVLALDEATPVAV 260

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544584|ref|XP_002513353.1| phosphoglycerate kinase, putative [Ricinus communis] gi|223547261|gb|EEF48756.1| phosphoglycerate kinase, putative [Ricinus communis]

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/46 (76%), Positives = 37/46 (80%), Gaps = 3/46 (6%)

Query: 39  VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDEATPVAV 84
           VE VGVA VM+HIST   GGGA LEL EGKELP V+A DEATPVAV
Sbjct: 437 VEKVGVAEVMSHIST---GGGASLELLEGKELPGVLALDEATPVAV 479

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357451629|ref|XP_003596091.1| Phosphoglycerate kinase [Medicago truncatula] gi|355485139|gb|AES66342.1| Phosphoglycerate kinase [Medicago truncatula]

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/46 (76%), Positives = 37/46 (80%), Gaps = 3/46 (6%)

Query: 39  VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDEATPVAV 84
           VE VGVA VM+HIST   GGGA LEL EGKELP V+A DEATPVAV
Sbjct: 437 VEKVGVADVMSHIST---GGGASLELLEGKELPGVLALDEATPVAV 479

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525742|ref|XP_003531482.1| PREDICTED: phosphoglycerate kinase, chloroplastic-like [Glycine max]

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/46 (76%), Positives = 37/46 (80%), Gaps = 3/46 (6%)

Query: 39  VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDEATPVAV 84
           VE VGVASVM+HIST   GGGA LEL EGKELP V+A DEA PVAV
Sbjct: 443 VEKVGVASVMSHIST---GGGASLELLEGKELPGVLALDEAVPVAV 485

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557028|ref|XP_003546820.1| PREDICTED: phosphoglycerate kinase, chloroplastic-like [Glycine max]

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/46 (76%), Positives = 37/46 (80%), Gaps = 3/46 (6%)

Query: 39  VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDEATPVAV 84
           VE VGVASVM+HIST   GGGA LEL EGKELP V+A DEA PVAV
Sbjct: 441 VEKVGVASVMSHIST---GGGASLELLEGKELPGVLALDEAVPVAV 483

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494603|ref|XP_003634814.1| PREDICTED: phosphoglycerate kinase, chloroplastic [Vitis vinifera]

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/46 (76%), Positives = 36/46 (78%), Gaps = 3/46 (6%)

Query: 39  VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDEATPVAV 84
           VE VGVA VM+HIST   GGGA LEL EGKELP VVA DEATPV V
Sbjct: 350 VEKVGVADVMSHIST---GGGASLELLEGKELPGVVALDEATPVPV 392

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736144|emb|CBI24182.3| unnamed protein product [Vitis vinifera]

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/46 (76%), Positives = 36/46 (78%), Gaps = 3/46 (6%)

Query: 39  VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDEATPVAV 84
           VE VGVA VM+HIST   GGGA LEL EGKELP VVA DEATPV V
Sbjct: 363 VEKVGVADVMSHIST---GGGASLELLEGKELPGVVALDEATPVPV 405

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464995|ref|XP_002263796.1| PREDICTED: phosphoglycerate kinase, chloroplastic isoform 1 [Vitis vinifera] gi|147843756|emb|CAN81990.1| hypothetical protein VITISV_000725 [Vitis vinifera]

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/46 (76%), Positives = 36/46 (78%), Gaps = 3/46 (6%)

Query: 39  VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDEATPVAV 84
           VE VGVA VM+HIST   GGGA LEL EGKELP VVA DEATPV V
Sbjct: 436 VEKVGVADVMSHIST---GGGASLELLEGKELPGVVALDEATPVPV 478

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242090961|ref|XP_002441313.1| hypothetical protein SORBIDRAFT_09g024340 [Sorghum bicolor] gi|241946598|gb|EES19743.1| hypothetical protein SORBIDRAFT_09g024340 [Sorghum bicolor]

 Score = 64.7 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 35/46 (76%), Positives = 36/46 (78%), Gaps = 3/46 (6%)

Query: 39  VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDEATPVAV 84
           VE VGVA VM+HIST   GGGA LEL EGKELP VVA DEA PVAV
Sbjct: 441 VEKVGVADVMSHIST---GGGASLELLEGKELPGVVALDEAIPVAV 483

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444282|ref|XP_004139904.1| PREDICTED: phosphoglycerate kinase, chloroplastic-like [Cucumis sativus] gi|449475841|ref|XP_004154567.1| PREDICTED: phosphoglycerate kinase, chloroplastic-like [Cucumis sativus]

 Score = 64.7 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 34/46 (73%), Positives = 37/46 (80%), Gaps = 3/46 (6%)

Query: 39  VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDEATPVAV 84
           VE VGVA+VM+HIST   GGGA LEL EGKELP V+A DEA PVAV
Sbjct: 443 VEKVGVANVMSHIST---GGGASLELLEGKELPGVLALDEAVPVAV 485

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00035675001	RecName- Full=Phosphoglycerate kinase; EC=2.7.2.3; (405 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00018496001	RecName- Full=Triosephosphate isomerase; EC=5.3.1.1; (254 aa)	•	•	•	•		•	•		0.998
	GSVIVG00024314001	RecName- Full=Triosephosphate isomerase; EC=5.3.1.1; (254 aa)	•	•	•	•		•	•		0.998
	GSVIVG00036055001	RecName- Full=Triosephosphate isomerase; EC=5.3.1.1; (321 aa)	•	•	•	•		•	•		0.995
	GAPDH	SubName- Full=Chromosome chr17 scaffold_246, whole genome shotgun sequence; (317 aa)	•			•		•	•		0.993
	GSVIVG00020570001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (337 aa)	•			•		•	•		0.993
	GSVIVG00035097001	SubName- Full=Chromosome chr1 scaffold_75, whole genome shotgun sequence; (342 aa)	•			•		•	•		0.993
	26N20_20	SubName- Full=Chromosome chr8 scaffold_68, whole genome shotgun sequence; (551 aa)	•			•		•	•		0.992
	GSVIVG00002074001	SubName- Full=Chromosome chr19 scaffold_126, whole genome shotgun sequence; (429 aa)	•			•		•	•		0.988
	GSVIVG00002909001	SubName- Full=Chromosome chr18 scaffold_137, whole genome shotgun sequence; (453 aa)	•			•		•	•		0.984
	GSVIVG00035648001	RecName- Full=Ribulose bisphosphate carboxylase large chain; Short=RuBisCO large subunit; EC=4. [...] (327 aa)	•					•	•		0.971

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	84
PLN03034	481	PLN03034, PLN03034, phosphoglycerate kinase; Provi	2e-16
cd00318	397	cd00318, Phosphoglycerate_kinase, Phosphoglycerate	7e-10
PRK00073	389	PRK00073, pgk, phosphoglycerate kinase; Provisiona	2e-09
PLN02282	401	PLN02282, PLN02282, phosphoglycerate kinase	2e-09
COG0126	395	COG0126, Pgk, 3-phosphoglycerate kinase [Carbohydr	3e-09
PTZ00005	417	PTZ00005, PTZ00005, phosphoglycerate kinase; Provi	2e-06
PRK13962	645	PRK13962, PRK13962, bifunctional phosphoglycerate	2e-06
pfam00162	383	pfam00162, PGK, Phosphoglycerate kinase	2e-05

>gnl|CDD|178602 PLN03034, PLN03034, phosphoglycerate kinase; Provisional

 Score = 71.6 bits (175), Expect = 2e-16
 Identities = 36/46 (78%), Positives = 37/46 (80%), Gaps = 3/46 (6%)

Query: 39  VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDEATPVAV 84
           VE VGVA VM+HIST   GGGA LEL EGKELP VVA DEATPVAV
Sbjct: 439 VEKVGVADVMSHIST---GGGASLELLEGKELPGVVALDEATPVAV 481

Length = 481

>gnl|CDD|238195 cd00318, Phosphoglycerate_kinase, Phosphoglycerate kinase (PGK) is a monomeric enzyme which catalyzes the transfer of the high-energy phosphate group of 1,3-bisphosphoglycerate to ADP, forming ATP and 3-phosphoglycerate

 Score = 53.0 bits (128), Expect = 7e-10
 Identities = 22/40 (55%), Positives = 27/40 (67%), Gaps = 3/40 (7%)

Query: 39  VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDE 78
            E  G+A  ++H+ST   GGGA LEL EGKELP V A +E
Sbjct: 361 AEKFGLADKISHVST---GGGASLELLEGKELPGVAALEE 397

This reaction represents the first of the two substrate-level phosphorylation events in the glycolytic pathway. Substrate-level phosphorylation is defined as production of ATP by a process, which is catalyzed by water-soluble enzymes in the cytosol; not involving membranes and ion gradients. . Length = 397

>gnl|CDD|234613 PRK00073, pgk, phosphoglycerate kinase; Provisional

 Score = 51.6 bits (125), Expect = 2e-09
 Identities = 23/40 (57%), Positives = 27/40 (67%), Gaps = 3/40 (7%)

Query: 39  VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDE 78
           VE +G+A   +HIST   GGGA LE  EGKELP V A +E
Sbjct: 353 VEKLGLADKFSHIST---GGGASLEFLEGKELPGVAALEE 389

Length = 389

>gnl|CDD|165923 PLN02282, PLN02282, phosphoglycerate kinase

 Score = 51.9 bits (124), Expect = 2e-09
 Identities = 26/41 (63%), Positives = 30/41 (73%), Gaps = 3/41 (7%)

Query: 39  VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDEA 79
           VE VG+A  M+HIST   GGGA LEL EGK LP V+A D+A
Sbjct: 364 VEKVGLADKMSHIST---GGGASLELLEGKPLPGVLALDDA 401

Length = 401

>gnl|CDD|223204 COG0126, Pgk, 3-phosphoglycerate kinase [Carbohydrate transport and metabolism]

 Score = 51.4 bits (124), Expect = 3e-09
 Identities = 21/42 (50%), Positives = 29/42 (69%), Gaps = 3/42 (7%)

Query: 38  HVENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDEA 79
            ++ +G+A  ++HIST   GGGA LE  EGKELP V A +E+
Sbjct: 355 AIDKLGLADKISHIST---GGGASLEFLEGKELPGVEALEES 393

Length = 395

>gnl|CDD|173310 PTZ00005, PTZ00005, phosphoglycerate kinase; Provisional

 Score = 43.5 bits (103), Expect = 2e-06
 Identities = 23/37 (62%), Positives = 27/37 (72%), Gaps = 3/37 (8%)

Query: 39  VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVA 75
           VE  G A+ ++H+ST   GGGA LEL EGKELP VVA
Sbjct: 380 VEKTGAANKVSHVST---GGGASLELLEGKELPGVVA 413

Length = 417

>gnl|CDD|237572 PRK13962, PRK13962, bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional

 Score = 43.6 bits (103), Expect = 2e-06
 Identities = 20/33 (60%), Positives = 22/33 (66%), Gaps = 3/33 (9%)

Query: 39  VENVGVASVMNHISTSGAGGGAGLELPEGKELP 71
           VE +G A  M+HIST   GGGA LE  EGK LP
Sbjct: 357 VEKLGFADKMSHIST---GGGASLEFLEGKVLP 386

Length = 645

>gnl|CDD|215761 pfam00162, PGK, Phosphoglycerate kinase

 Score = 40.1 bits (95), Expect = 2e-05
 Identities = 18/32 (56%), Positives = 20/32 (62%), Gaps = 3/32 (9%)

Query: 37  CHVENVGVASVMNHISTSGAGGGAGLELPEGK 68
             VE  G+A   +HIST   GGGA LEL EGK
Sbjct: 355 AAVEKAGLADKFSHIST---GGGASLELLEGK 383

Length = 383

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	84
PLN03034	481	phosphoglycerate kinase; Provisional	99.63
COG0126	395	Pgk 3-phosphoglycerate kinase [Carbohydrate transp	99.62
PTZ00005	417	phosphoglycerate kinase; Provisional	99.59
PRK00073	389	pgk phosphoglycerate kinase; Provisional	99.58
PLN02282	401	phosphoglycerate kinase	99.58
cd00318	397	Phosphoglycerate_kinase Phosphoglycerate kinase (P	99.57
PRK13962	645	bifunctional phosphoglycerate kinase/triosephospha	99.53
KOG1367	416	consensus 3-phosphoglycerate kinase [Carbohydrate	99.5
PF00162	384	PGK: Phosphoglycerate kinase; InterPro: IPR001576	99.05

>PLN03034 phosphoglycerate kinase; Provisional

Probab=99.63  E-value=1e-16  Score=131.98  Aligned_cols=50  Identities=72%  Similarity=0.920  Sum_probs=48.3

Q ss_pred             cccHHHHHHhhCCCCccEEeecCCCCccceecccCCCCCchhhhccccCCCCC
Q 037914           32 RWRLCCHVENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDEATPVAV   84 (84)
Q Consensus        32 ~~DTaaAi~~~Gl~d~~sHIST~~~GGGA~LefLeGk~LPgVeAL~~s~~v~~   84 (84)
                      +|||++|++++|+.++||||||   ||||+|||||||+||||+||+++.||+|
T Consensus       432 GGDt~aAi~~~g~~~~~shiST---GGGA~Le~LeGk~LPgv~aL~~~~~~~~  481 (481)
T PLN03034        432 GGDSVAAVEKVGVADVMSHIST---GGGASLELLEGKELPGVVALDEATPVAV  481 (481)
T ss_pred             CcHHHHHHHHcCCccceeEEeC---cHHHHHHHHcCCCCcHHHHHhhcCCccC
Confidence            7899999999999999999999   9999999999999999999999988876

>COG0126 Pgk 3-phosphoglycerate kinase [Carbohydrate transport and metabolism]

Probab=99.62  E-value=1.1e-16  Score=129.67  Aligned_cols=46  Identities=46%  Similarity=0.716  Sum_probs=44.1

Q ss_pred             cccHHHHHHhhCCCCccEEeecCCCCccceecccCCCCCchhhhccccC
Q 037914           32 RWRLCCHVENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDEAT   80 (84)
Q Consensus        32 ~~DTaaAi~~~Gl~d~~sHIST~~~GGGA~LefLeGk~LPgVeAL~~s~   80 (84)
                      +|||++|++++|++|+||||||   ||||||||||||+||||++|+++.
T Consensus       349 GGdt~aAi~~~G~~d~~shIST---GGGAsLe~leGk~LPgv~aL~~~~  394 (395)
T COG0126         349 GGDTAAAIDKLGLADKISHIST---GGGASLEFLEGKELPGVEALEESA  394 (395)
T ss_pred             CcHHHHHHHHcCccccCceEec---CchHHHHHhcCCCcchHHHHhhcc
Confidence            7999999999999999999999   999999999999999999998763

>PTZ00005 phosphoglycerate kinase; Provisional

Probab=99.59  E-value=3.3e-16  Score=126.59  Aligned_cols=45  Identities=51%  Similarity=0.696  Sum_probs=43.0

Q ss_pred             cccHHHHHHhhCCCCccEEeecCCCCccceecccCCCCCchhhhcccc
Q 037914           32 RWRLCCHVENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDEA   79 (84)
Q Consensus        32 ~~DTaaAi~~~Gl~d~~sHIST~~~GGGA~LefLeGk~LPgVeAL~~s   79 (84)
                      +|||++|++++|++++||||||   ||||+|+|||||+||||+||+++
T Consensus       373 GGdt~aAi~~~g~~~~~shvST---GGGA~Le~LeGk~LPgv~aL~~~  417 (417)
T PTZ00005        373 GGDTASLVEKTGAANKVSHVST---GGGASLELLEGKELPGVVALSNK  417 (417)
T ss_pred             CcHHHHHHHHcCCCCCCceEcC---chHHHHHHHcCCCcchHHHhhcC
Confidence            6899999999999999999999   99999999999999999999753

>PRK00073 pgk phosphoglycerate kinase; Provisional

Probab=99.58  E-value=5.3e-16  Score=124.38  Aligned_cols=44  Identities=52%  Similarity=0.753  Sum_probs=42.5

Q ss_pred             cccHHHHHHhhCCCCccEEeecCCCCccceecccCCCCCchhhhccc
Q 037914           32 RWRLCCHVENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDE   78 (84)
Q Consensus        32 ~~DTaaAi~~~Gl~d~~sHIST~~~GGGA~LefLeGk~LPgVeAL~~   78 (84)
                      +|||++|++++|++++|+||||   ||||+|||||||+||||+||++
T Consensus       346 GGdt~aa~~~~g~~~~~shiST---GGGA~Le~LeGk~LPgv~aL~~  389 (389)
T PRK00073        346 GGDTAAAVEKLGLADKFSHIST---GGGASLEFLEGKELPGVAALEE  389 (389)
T ss_pred             CCHHHHHHHHcCCCCCccEEcC---CcHHHHHHHcCCCcchHHHhcC
Confidence            6899999999999999999999   9999999999999999999974

>PLN02282 phosphoglycerate kinase

Probab=99.58  E-value=5.9e-16  Score=124.58  Aligned_cols=45  Identities=58%  Similarity=0.781  Sum_probs=43.2

Q ss_pred             cccHHHHHHhhCCCCccEEeecCCCCccceecccCCCCCchhhhcccc
Q 037914           32 RWRLCCHVENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDEA   79 (84)
Q Consensus        32 ~~DTaaAi~~~Gl~d~~sHIST~~~GGGA~LefLeGk~LPgVeAL~~s   79 (84)
                      +|||++|++++|++++|+||||   ||||+|+|||||+||||+||+++
T Consensus       357 GGdt~aA~~~~g~~~~~shvST---GGGA~Le~LeGk~LPgi~aL~~~  401 (401)
T PLN02282        357 GGDSVAAVEKVGLADKMSHIST---GGGASLELLEGKPLPGVLALDDA  401 (401)
T ss_pred             CcHHHHHHHHcCCcCCceEEeC---chHHHHHHHcCCCcchHHHhhcC
Confidence            6899999999999999999999   99999999999999999999863

>cd00318 Phosphoglycerate_kinase Phosphoglycerate kinase (PGK) is a monomeric enzyme which catalyzes the transfer of the high-energy phosphate group of 1,3-bisphosphoglycerate to ADP, forming ATP and 3-phosphoglycerate

Probab=99.57  E-value=6.8e-16  Score=124.00  Aligned_cols=44  Identities=50%  Similarity=0.730  Sum_probs=42.5

Q ss_pred             cccHHHHHHhhCCCCccEEeecCCCCccceecccCCCCCchhhhccc
Q 037914           32 RWRLCCHVENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDE   78 (84)
Q Consensus        32 ~~DTaaAi~~~Gl~d~~sHIST~~~GGGA~LefLeGk~LPgVeAL~~   78 (84)
                      +|||++|++++|++++||||||   ||||+|+|||||+||||+||++
T Consensus       354 GGdt~aa~~~~g~~~~~shvST---GGGA~Le~LeGk~LPgi~aL~~  397 (397)
T cd00318         354 GGDTAAAAEKFGLADKISHVST---GGGASLELLEGKELPGVAALEE  397 (397)
T ss_pred             CcHHHHHHHHcCCCCCceEEcC---chHHHHHHHcCCCCchHHhhcC
Confidence            7999999999999999999999   9999999999999999999974

This reaction represents the first of the two substrate-level phosphorylation events in the glycolytic pathway. Substrate-level phosphorylation is defined as production of ATP by a process, which is catalyzed by water-soluble enzymes in the cytosol; not involving membranes and ion gradients.

>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional

Probab=99.53  E-value=2e-15  Score=127.00  Aligned_cols=45  Identities=44%  Similarity=0.622  Sum_probs=43.4

Q ss_pred             cccHHHHHHhhCCCCccEEeecCCCCccceecccCCCCCchhhhcccc
Q 037914           32 RWRLCCHVENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDEA   79 (84)
Q Consensus        32 ~~DTaaAi~~~Gl~d~~sHIST~~~GGGA~LefLeGk~LPgVeAL~~s   79 (84)
                      +|||++|++++|++++||||||   ||||+|||||||+||||+||+++
T Consensus       350 GGdt~aa~~~~g~~~~~shvST---GGGA~Le~LeGk~LPgv~aL~~s  394 (645)
T PRK13962        350 GGDSAAAVEKLGFADKMSHIST---GGGASLEFLEGKVLPGIACLLDK  394 (645)
T ss_pred             chHHHHHHHHcCCccCceEEcC---ChHHHHHHHcCCccHHHHHHhhc
Confidence            6899999999999999999999   99999999999999999999875

>KOG1367 consensus 3-phosphoglycerate kinase [Carbohydrate transport and metabolism]

Probab=99.50  E-value=1e-14  Score=118.72  Aligned_cols=45  Identities=44%  Similarity=0.589  Sum_probs=43.5

Q ss_pred             cccHHHHHHhhCCCCccEEeecCCCCccceecccCCCCCchhhhcccc
Q 037914           32 RWRLCCHVENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDEA   79 (84)
Q Consensus        32 ~~DTaaAi~~~Gl~d~~sHIST~~~GGGA~LefLeGk~LPgVeAL~~s   79 (84)
                      +|||+.|++++|.+|++|||||   ||||+||+||||.||||.+|++.
T Consensus       371 GGDTata~~k~g~~dk~ShVST---GGGasLeLLeGK~LPGv~aLs~~  415 (416)
T KOG1367|consen  371 GGDTATACKKFGTEDKVSHVST---GGGASLELLEGKVLPGVDALSEA  415 (416)
T ss_pred             CCcHHHHHHHhCcccceeeeec---CCceehhhhcCCcCcchhhhccC
Confidence            6899999999999999999999   99999999999999999999875

>PF00162 PGK: Phosphoglycerate kinase; InterPro: IPR001576 Phosphoglycerate kinase (2

Probab=99.05  E-value=4e-11  Score=95.99  Aligned_cols=34  Identities=41%  Similarity=0.612  Sum_probs=33.0

Q ss_pred             cccHHHHHHhhCCCCccEEeecCCCCccceecccCCC
Q 037914           32 RWRLCCHVENVGVASVMNHISTSGAGGGAGLELPEGK   68 (84)
Q Consensus        32 ~~DTaaAi~~~Gl~d~~sHIST~~~GGGA~LefLeGk   68 (84)
                      +|||++|++++|+.++||||||   ||||+|+|||||
T Consensus       351 GGdt~~a~~~~g~~~~~shvST---GGGA~L~~LeGk  384 (384)
T PF00162_consen  351 GGDTAAAIKKFGLADKFSHVST---GGGAFLEFLEGK  384 (384)
T ss_dssp             SHHHHHHHHHTTGGGGSSEEES---SSHHHHHHHTTS
T ss_pred             ccHHHHHHHhcCcccceeEEec---CcHHHHHHhcCC
Confidence            6899999999999999999999   999999999997

7.2.3 from EC) (PGK) is an enzyme that catalyses the formation of ATP to ADP and vice versa. In the second step of the second phase in glycolysis, 1,3-diphosphoglycerate is converted to 3-phosphoglycerate, forming one molecule of ATP. If the reverse were to occur, one molecule of ADP would be formed. This reaction is essential in most cells for the generation of ATP in aerobes, for fermentation in anaerobes and for carbon fixation in plants. PGK is found in all living organisms and its sequence has been highly conserved throughout evolution. The enzyme exists as a monomer containing two nearly equal-sized domains that correspond to the N- and C-termini of the protein (the last 15 C-terminal residues loop back into the N-terminal domain). 3-phosphoglycerate (3-PG) binds to the N-terminal, while the nucleotide substrates, MgATP or MgADP, bind to the C-terminal domain of the enzyme. This extended two-domain structure is associated with large-scale 'hinge-bending' conformational changes, similar to those found in hexokinase []. At the core of each domain is a 6-stranded parallel beta-sheet surrounded by alpha helices. Domain 1 has a parallel beta-sheet of six strands with an order of 342156, while domain 2 has a parallel beta-sheet of six strands with an order of 321456. Analysis of the reversible unfolding of yeast phosphoglycerate kinase leads to the conclusion that the two lobes are capable of folding independently, consistent with the presence of intermediates on the folding pathway with a single domain folded []. Phosphoglycerate kinase (PGK) deficiency is associated with haemolytic anaemia and mental disorders in man []. This group represents a phosphoglycerate kinase.; GO: 0004618 phosphoglycerate kinase activity, 0006096 glycolysis; PDB: 1PHP_A 1V6S_A 2IE8_A 1ZMR_A 16PK_A 13PK_B 2P9Q_A 2P9T_A 2PAA_B 3OZA_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	84
16pk_A	415	PGK, 3-phosphoglycerate kinase; ternary complex, g	3e-10
3q3v_A	403	Phosphoglycerate kinase; structural genomics, cent	4e-10
1vpe_A	398	Phosphoglycerate kinase; transferase, hyperthermos	5e-10
1qpg_A	415	PGK, 3-phosphoglycerate kinase; phosphotransferase	5e-10
1php_A	394	3-phosphoglycerate kinase; HET: ADP; 1.65A {Geobac	6e-10
2cun_A	410	Phosphoglycerate kinase; structural genomics, tanp	7e-10
1zmr_A	387	Phosphoglycerate kinase; transferase, glycolysis;	9e-10
1v6s_A	390	Phosphoglycerate kinase; riken structu genomics/pr	1e-09
4fey_A	395	Phosphoglycerate kinase; structural genomics, niai	1e-09
3oz7_A	417	Phosphoglycerate kinase; transferase, ATP binding,	2e-09
2wzb_A	416	Phosphoglycerate kinase 1; hereditary hemolytic an	2e-09
1fw8_A	416	PGK P72, phosphoglycerate kinase; phosphotransfera	9e-09

>16pk_A PGK, 3-phosphoglycerate kinase; ternary complex, glycolysis, transferase, bisubstrate, analog; HET: BIS EPE; 1.60A {Trypanosoma brucei} SCOP: c.86.1.1 PDB: 13pk_A* Length = 415

 Score = 53.3 bits (129), Expect = 3e-10
 Identities = 21/40 (52%), Positives = 24/40 (60%), Gaps = 3/40 (7%)

Query: 39  VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDE 78
            E  G A  M+H+ST   GGGA LEL EGK LP V   D+
Sbjct: 378 AELSGEAKRMSHVST---GGGASLELLEGKTLPGVTVLDD 414

>3q3v_A Phosphoglycerate kinase; structural genomics, center for structural genomics of infec diseases, csgid, PGK; HET: PGE; 2.15A {Campylobacter jejuni subsp} Length = 403

 Score = 52.9 bits (128), Expect = 4e-10
 Identities = 22/40 (55%), Positives = 22/40 (55%), Gaps = 3/40 (7%)

Query: 39  VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDE 78
           V   G A  M  IST   GGGA LEL EGKELP V A   
Sbjct: 363 VARAGDADEMTFIST---GGGASLELIEGKELPGVKALRS 399

>1vpe_A Phosphoglycerate kinase; transferase, hyperthermostability, crystal, AMP-PNP, 3-PGA; HET: ANP 3PG; 2.00A {Thermotoga maritima} SCOP: c.86.1.1 Length = 398

 Score = 52.9 bits (128), Expect = 5e-10
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 3/40 (7%)

Query: 39  VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDE 78
           V   G+    +H+ST   GGGA LE  EGKELP + +   
Sbjct: 359 VNKFGLEDKFSHVST---GGGASLEFLEGKELPGIASMRI 395

>1qpg_A PGK, 3-phosphoglycerate kinase; phosphotransferase (carboxyl acceptor), acetylation, glycolysis; HET: MAP 3PG; 2.40A {Saccharomyces cerevisiae} SCOP: c.86.1.1 PDB: 3pgk_A* Length = 415

 Score = 52.9 bits (128), Expect = 5e-10
 Identities = 20/40 (50%), Positives = 24/40 (60%), Gaps = 3/40 (7%)

Query: 39  VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDE 78
            +  GV   ++H+ST   GGGA LEL EGKELP V    E
Sbjct: 377 AKKYGVTDKISHVST---GGGASLELLEGKELPGVAFLSE 413

>1php_A 3-phosphoglycerate kinase; HET: ADP; 1.65A {Geobacillus stearothermophilus} SCOP: c.86.1.1 PDB: 3b2b_A* 3uwd_A* Length = 394

 Score = 52.5 bits (127), Expect = 6e-10
 Identities = 23/40 (57%), Positives = 28/40 (70%), Gaps = 3/40 (7%)

Query: 39  VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDE 78
           VE  G+A  M+HIST   GGGA LE  EGK+LP VVA ++
Sbjct: 357 VEKFGLADKMDHIST---GGGASLEFMEGKQLPGVVALED 393

>2cun_A Phosphoglycerate kinase; structural genomics, tanpaku 3000, structural genomics/proteomics initiative, RSGI, NPPSFA; HET: 3PG; 2.10A {Pyrococcus horikoshii} Length = 410

 Score = 52.5 bits (127), Expect = 7e-10
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 4/41 (9%)

Query: 39  VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDEA 79
           ++  G+   + HIST   GGGA L    G+ELPV+ A   +
Sbjct: 365 IQKYGITG-ITHIST---GGGAMLSFFAGEELPVLRALQIS 401

>1zmr_A Phosphoglycerate kinase; transferase, glycolysis; 2.40A {Escherichia coli} Length = 387

 Score = 52.1 bits (126), Expect = 9e-10
 Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 3/40 (7%)

Query: 39  VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDE 78
           ++  G+A  +++IST   GGGA LE  EGK LP V   +E
Sbjct: 347 IDLFGIADKISYIST---GGGAFLEFVEGKVLPAVAMLEE 383

>1v6s_A Phosphoglycerate kinase; riken structu genomics/proteomics initiative, RSGI, structural genomics, transferase; 1.50A {Thermus thermophilus} SCOP: c.86.1.1 PDB: 2ie8_A Length = 390

 Score = 51.3 bits (124), Expect = 1e-09
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)

Query: 39  VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFD 77
           V  +G+     H+ST   GGGA LE  E   LP +   +
Sbjct: 354 VNRLGLKERFGHVST---GGGASLEFLEKGTLPGLEVLE 389

>4fey_A Phosphoglycerate kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: ADP; 2.30A {Francisella tularensis subsp} PDB: 4ehj_A Length = 395

 Score = 51.3 bits (124), Expect = 1e-09
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)

Query: 39  VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDE 78
           +E  G+   +++IST    GGA LE  EGK+LP +    E
Sbjct: 355 IEKFGIKDQVSYIST---AGGAFLEFLEGKKLPAIEILKE 391

>3oz7_A Phosphoglycerate kinase; transferase, ATP binding, glycolysi malaria parasite; 2.70A {Plasmodium falciparum} PDB: 1ltk_A* 3oza_A Length = 417

 Score = 51.4 bits (124), Expect = 2e-09
 Identities = 20/39 (51%), Positives = 25/39 (64%), Gaps = 3/39 (7%)

Query: 39  VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFD 77
           VE     + ++H+ST   GGGA LEL EGKELP V+A  
Sbjct: 381 VEQQNKKNEISHVST---GGGASLELLEGKELPGVLALS 416

>2wzb_A Phosphoglycerate kinase 1; hereditary hemolytic anemia, transferase, phosphoprotein, KI glycolysis, nucleotide-binding; HET: ADP 3PG; 1.47A {Homo sapiens} PDB: 2wzc_A* 2x13_A* 2x15_A* 2xe6_A* 2xe7_A* 2xe8_A* 2ybe_A* 3c3b_A* 2zgv_A* 3c3a_A* 3c39_A* 3c3c_A* 2wzd_A* 2x14_A* 2y3i_A* 1vjd_A* 1vjc_A* 1kf0_A* 1hdi_A* 2p9t_A* ... Length = 416

 Score = 51.4 bits (124), Expect = 2e-09
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 3/39 (7%)

Query: 39  VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFD 77
                    ++H+ST   GGGA LEL EGK LP V A  
Sbjct: 379 CAKWNTEDKVSHVST---GGGASLELLEGKVLPGVDALS 414

>1fw8_A PGK P72, phosphoglycerate kinase; phosphotransferase, glycoly mutant, permutation, permuted sequence, protein foldin domain protein; 2.30A {Saccharomyces cerevisiae} SCOP: c.86.1.1 Length = 416

 Score = 49.5 bits (119), Expect = 9e-09
 Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 3/44 (6%)

Query: 39  VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDEATPV 82
            +  GV   ++H+ST   GGGA LEL EGKELP V    E   +
Sbjct: 307 AKKYGVTDKISHVST---GGGASLELLEGKELPGVAFLSEKKSL 347

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	84
4fey_A	395	Phosphoglycerate kinase; structural genomics, niai	99.63
1fw8_A	416	PGK P72, phosphoglycerate kinase; phosphotransfera	99.62
1php_A	394	3-phosphoglycerate kinase; HET: ADP; 1.65A {Geobac	99.62
3oz7_A	417	Phosphoglycerate kinase; transferase, ATP binding,	99.62
1vpe_A	398	Phosphoglycerate kinase; transferase, hyperthermos	99.62
1qpg_A	415	PGK, 3-phosphoglycerate kinase; phosphotransferase	99.62
3q3v_A	403	Phosphoglycerate kinase; structural genomics, cent	99.62
2wzb_A	416	Phosphoglycerate kinase 1; hereditary hemolytic an	99.61
16pk_A	415	PGK, 3-phosphoglycerate kinase; ternary complex, g	99.61
1zmr_A	387	Phosphoglycerate kinase; transferase, glycolysis;	99.61
1v6s_A	390	Phosphoglycerate kinase; riken structu genomics/pr	99.6
2cun_A	410	Phosphoglycerate kinase; structural genomics, tanp	99.57

>4fey_A Phosphoglycerate kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: ADP; 2.30A {Francisella tularensis subsp} PDB: 4ehj_A

Probab=99.63  E-value=4.1e-17  Score=130.47  Aligned_cols=45  Identities=36%  Similarity=0.501  Sum_probs=43.5

Q ss_pred             cccHHHHHHhhCCCCccEEeecCCCCccceecccCCCCCchhhhcccc
Q 037914           32 RWRLCCHVENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDEA   79 (84)
Q Consensus        32 ~~DTaaAi~~~Gl~d~~sHIST~~~GGGA~LefLeGk~LPgVeAL~~s   79 (84)
                      +|||++|++++|++|+||||||   ||||||||||||+||||+||++.
T Consensus       348 GGDt~aav~~~g~~d~~shiST---GGGA~Le~LeGk~LPgv~aL~~~  392 (395)
T 4fey_A          348 GGDTIAAIEKFGIKDQVSYIST---AGGAFLEFLEGKKLPAIEILKEK  392 (395)
T ss_dssp             SHHHHHHHHHTTCSTTSSEEEC---CSHHHHHHHTTCCCHHHHHHHHT
T ss_pred             CcHHHHHHHHcCCcCCceEEcC---ChHHHHHHHcCCCchHHHHHHhh
Confidence            6999999999999999999999   99999999999999999999865

>1fw8_A PGK P72, phosphoglycerate kinase; phosphotransferase, glycoly mutant, permutation, permuted sequence, protein foldin domain protein; 2.30A {Saccharomyces cerevisiae} SCOP: c.86.1.1

Probab=99.62  E-value=5.2e-17  Score=130.48  Aligned_cols=46  Identities=43%  Similarity=0.603  Sum_probs=44.0

Q ss_pred             cccHHHHHHhhCCCCccEEeecCCCCccceecccCCCCCchhhhccccC
Q 037914           32 RWRLCCHVENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDEAT   80 (84)
Q Consensus        32 ~~DTaaAi~~~Gl~d~~sHIST~~~GGGA~LefLeGk~LPgVeAL~~s~   80 (84)
                      +|||++|++++|++|+||||||   ||||+|||||||+||||+||+++.
T Consensus       300 GGDt~aav~~~G~~d~~shiST---GGGA~LE~LEGk~LPgV~aL~~~~  345 (416)
T 1fw8_A          300 GGDTATVAKKYGVTDKISHVST---GGGASLELLEGKELPGVAFLSEKK  345 (416)
T ss_dssp             TTHHHHHHHHTTCGGGSSEECS---CSHHHHHHHTTCCCHHHHTSCSSC
T ss_pred             CcHHHHHHHHcCCCCCcceecc---ccceehHhhcCCCChHHHHHHhcc
Confidence            6899999999999999999999   999999999999999999998753

>1php_A 3-phosphoglycerate kinase; HET: ADP; 1.65A {Geobacillus stearothermophilus} SCOP: c.86.1.1 PDB: 3b2b_A* 3uwd_A*

Probab=99.62  E-value=5.7e-17  Score=129.53  Aligned_cols=44  Identities=52%  Similarity=0.767  Sum_probs=42.8

Q ss_pred             cccHHHHHHhhCCCCccEEeecCCCCccceecccCCCCCchhhhccc
Q 037914           32 RWRLCCHVENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDE   78 (84)
Q Consensus        32 ~~DTaaAi~~~Gl~d~~sHIST~~~GGGA~LefLeGk~LPgVeAL~~   78 (84)
                      +|||++|++++|++|+||||||   ||||+|||||||+||||+||++
T Consensus       350 GGDt~aav~~~g~~d~~shiST---GGGA~Le~LeGk~LPgv~aL~~  393 (394)
T 1php_A          350 GGDSAAAVEKFGLADKMDHIST---GGGASLEFMEGKQLPGVVALED  393 (394)
T ss_dssp             SHHHHHHHHHTTCGGGSSEECS---CTHHHHHHHTTCCCHHHHTSCB
T ss_pred             ChHHHHHHHHcCCCCCccEEeC---ChHHHHHHHcCCCcchHHHhhc
Confidence            6899999999999999999999   9999999999999999999986

>3oz7_A Phosphoglycerate kinase; transferase, ATP binding, glycolysi malaria parasite; 2.70A {Plasmodium falciparum} SCOP: c.86.1.1 PDB: 1ltk_A* 3oza_A

Probab=99.62  E-value=5.6e-17  Score=130.31  Aligned_cols=44  Identities=45%  Similarity=0.614  Sum_probs=42.6

Q ss_pred             cccHHHHHHhhCCCCccEEeecCCCCccceecccCCCCCchhhhccc
Q 037914           32 RWRLCCHVENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDE   78 (84)
Q Consensus        32 ~~DTaaAi~~~Gl~d~~sHIST~~~GGGA~LefLeGk~LPgVeAL~~   78 (84)
                      +|||++|++++|++|+||||||   ||||||||||||+||||+||++
T Consensus       374 GGDt~aav~~~g~~d~~shiST---GGGA~Le~LeGk~LPgv~aL~~  417 (417)
T 3oz7_A          374 GGDTASLVEQQNKKNEISHVST---GGGASLELLEGKELPGVLALSN  417 (417)
T ss_dssp             SHHHHHHHHHTTCGGGSSEECS---CSHHHHHHHTTCCCHHHHTSCC
T ss_pred             CcHHHHHHHHcCCcCCccEEcC---ChHHHHHHHcCCCCcceeeccC
Confidence            6899999999999999999999   9999999999999999999974

>1vpe_A Phosphoglycerate kinase; transferase, hyperthermostability, crystal, AMP-PNP, 3-PGA; HET: ANP 3PG; 2.00A {Thermotoga maritima} SCOP: c.86.1.1

Probab=99.62  E-value=5.9e-17  Score=129.57  Aligned_cols=45  Identities=38%  Similarity=0.587  Sum_probs=43.4

Q ss_pred             cccHHHHHHhhCCCCccEEeecCCCCccceecccCCCCCchhhhcccc
Q 037914           32 RWRLCCHVENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDEA   79 (84)
Q Consensus        32 ~~DTaaAi~~~Gl~d~~sHIST~~~GGGA~LefLeGk~LPgVeAL~~s   79 (84)
                      +|||++|++++|++|+||||||   ||||+|||||||+||||+||++.
T Consensus       352 GGDt~aav~~~g~~d~~shiST---GGGA~Le~LeGk~LPgv~aL~~~  396 (398)
T 1vpe_A          352 GGDSAAAVNKFGLEDKFSHVST---GGGASLEFLEGKELPGIASMRIK  396 (398)
T ss_dssp             SHHHHHHHHHTTCGGGSSEEES---CHHHHHHHHTSSCCHHHHTSCBC
T ss_pred             CcHHHHHHHHcCCcCCccEEeC---ChHHHHHHHcCCCCcHHHHHHhc
Confidence            6899999999999999999999   99999999999999999999864

>1qpg_A PGK, 3-phosphoglycerate kinase; phosphotransferase (carboxyl acceptor), acetylation, glycolysis; HET: MAP 3PG; 2.40A {Saccharomyces cerevisiae} SCOP: c.86.1.1 PDB: 3pgk_A*

Probab=99.62  E-value=6.4e-17  Score=129.92  Aligned_cols=45  Identities=44%  Similarity=0.616  Sum_probs=43.3

Q ss_pred             cccHHHHHHhhCCCCccEEeecCCCCccceecccCCCCCchhhhcccc
Q 037914           32 RWRLCCHVENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDEA   79 (84)
Q Consensus        32 ~~DTaaAi~~~Gl~d~~sHIST~~~GGGA~LefLeGk~LPgVeAL~~s   79 (84)
                      +|||++|++++|++|+||||||   ||||+|||||||+||||+||++.
T Consensus       370 GGDt~aav~~~g~~d~~shiST---GGGA~Le~LEGk~LPgv~aL~~~  414 (415)
T 1qpg_A          370 GGDTATVAKKYGVTDKISHVST---GGGASLELLEGKELPGVAFLSEK  414 (415)
T ss_dssp             CHHHHHHHHHTTCGGGSSEECC---CTHHHHHHHTSCCCHHHHTSCBC
T ss_pred             CcHHHHHHHHcCCCCCceEEeC---ChHHHHHHHcCCCCchHHHhhcC
Confidence            6899999999999999999999   99999999999999999999864

>3q3v_A Phosphoglycerate kinase; structural genomics, center for structural genomics of infec diseases, csgid, PGK; HET: PGE; 2.15A {Campylobacter jejuni subsp} SCOP: c.86.1.0

Probab=99.62  E-value=5.7e-17  Score=129.91  Aligned_cols=45  Identities=49%  Similarity=0.542  Sum_probs=43.0

Q ss_pred             cccHHHHHHhhCCCCccEEeecCCCCccceecccCCCCCchhhhcccc
Q 037914           32 RWRLCCHVENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDEA   79 (84)
Q Consensus        32 ~~DTaaAi~~~Gl~d~~sHIST~~~GGGA~LefLeGk~LPgVeAL~~s   79 (84)
                      +|||++|++++|++|+||||||   ||||+|||||||+||||+||++.
T Consensus       356 GGDt~aav~~~g~~d~~shiST---GGGA~Le~LeGk~LPgv~aL~~~  400 (403)
T 3q3v_A          356 GGDTADVVARAGDADEMTFIST---GGGASLELIEGKELPGVKALRSK  400 (403)
T ss_dssp             SHHHHHHHHHTTCGGGSSEECC---CHHHHHHHHTTCCCHHHHTTBC-
T ss_pred             CcHHHHHHHHcCCcCCccEEcC---ChHHHHHHHcCCCCcHHHHHhhh
Confidence            6899999999999999999999   99999999999999999999875

>2wzb_A Phosphoglycerate kinase 1; hereditary hemolytic anemia, transferase, phosphoprotein, KI glycolysis, nucleotide-binding; HET: ADP 3PG; 1.47A {Homo sapiens} PDB: 2wzc_A* 2x13_A* 2x15_A* 2xe6_A* 2xe7_A* 2xe8_A* 2ybe_A* 3c3b_A* 2zgv_A* 3c3a_A* 3c39_A* 3c3c_A* 2wzd_A* 2x14_A* 2y3i_A* 1vjd_A* 1vjc_A* 1kf0_A* 1hdi_A* 2p9t_A* ...

Probab=99.61  E-value=8e-17  Score=129.40  Aligned_cols=44  Identities=39%  Similarity=0.484  Sum_probs=42.6

Q ss_pred             cccHHHHHHhhCCCCccEEeecCCCCccceecccCCCCCchhhhccc
Q 037914           32 RWRLCCHVENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDE   78 (84)
Q Consensus        32 ~~DTaaAi~~~Gl~d~~sHIST~~~GGGA~LefLeGk~LPgVeAL~~   78 (84)
                      +|||++|++++|++|+||||||   ||||+|||||||+||||+||++
T Consensus       372 GGDt~aav~~~g~~d~~shiST---GGGA~Le~LEGk~LPgv~aL~~  415 (416)
T 2wzb_A          372 GGDTATCCAKWNTEDKVSHVST---GGGASLELLEGKVLPGVDALSN  415 (416)
T ss_dssp             STTHHHHHHHTTCTTSSSEEES---CSHHHHHHHHTCCCHHHHTSCB
T ss_pred             CcHHHHHHHHcCCCCCceEEeC---chHHHHHHHcCCCccHHHHHhc
Confidence            6899999999999999999999   9999999999999999999975

>16pk_A PGK, 3-phosphoglycerate kinase; ternary complex, glycolysis, transferase, bisubstrate, analog; HET: BIS EPE; 1.60A {Trypanosoma brucei} SCOP: c.86.1.1 PDB: 13pk_A*

Probab=99.61  E-value=8.1e-17  Score=129.43  Aligned_cols=44  Identities=48%  Similarity=0.627  Sum_probs=42.8

Q ss_pred             cccHHHHHHhhCCCCccEEeecCCCCccceecccCCCCCchhhhccc
Q 037914           32 RWRLCCHVENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDE   78 (84)
Q Consensus        32 ~~DTaaAi~~~Gl~d~~sHIST~~~GGGA~LefLeGk~LPgVeAL~~   78 (84)
                      +|||++|++++|++|+||||||   ||||+|||||||+||||+||++
T Consensus       371 GGDt~aAv~~~G~~d~~shiST---GGGA~Le~LeGk~LPgv~aL~~  414 (415)
T 16pk_A          371 GGDSASAAELSGEAKRMSHVST---GGGASLELLEGKTLPGVTVLDD  414 (415)
T ss_dssp             SHHHHHHHHHTTCTTTSSEECS---CHHHHHHHHTTCCCHHHHTSCB
T ss_pred             CcHHHHHHHHcCCccCceEEeC---ChHHHHHHHcCCCcchHHHhhc
Confidence            6899999999999999999999   9999999999999999999986

>1zmr_A Phosphoglycerate kinase; transferase, glycolysis; 2.40A {Escherichia coli}

Probab=99.61  E-value=5.6e-17  Score=129.43  Aligned_cols=45  Identities=40%  Similarity=0.547  Sum_probs=43.3

Q ss_pred             cccHHHHHHhhCCCCccEEeecCCCCccceecccCCCCCchhhhcccc
Q 037914           32 RWRLCCHVENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDEA   79 (84)
Q Consensus        32 ~~DTaaAi~~~Gl~d~~sHIST~~~GGGA~LefLeGk~LPgVeAL~~s   79 (84)
                      +|||++|++++|++|+||||||   ||||+|||||||+||||+||+++
T Consensus       340 GGDt~aav~~~g~~d~~shiST---GGGA~Le~LeGk~LPgv~aL~~~  384 (387)
T 1zmr_A          340 GGDTLAAIDLFGIADKISYIST---GGGAFLEFVEGKVLPAVAMLEER  384 (387)
T ss_dssp             SHHHHHHHHHHTCGGGSSEECC---CTHHHHHHHTTCCCHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCccCceEEeC---ChHHHHHHHcCCCCchHHHHHhh
Confidence            6899999999999999999999   99999999999999999999864

>1v6s_A Phosphoglycerate kinase; riken structu genomics/proteomics initiative, RSGI, structural genomics, transferase; 1.50A {Thermus thermophilus} SCOP: c.86.1.1 PDB: 2ie8_A

Probab=99.60  E-value=7.7e-17  Score=128.64  Aligned_cols=44  Identities=32%  Similarity=0.487  Sum_probs=42.5

Q ss_pred             cccHHHHHHhhCCCCccEEeecCCCCccceecccCCCCCchhhhccc
Q 037914           32 RWRLCCHVENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDE   78 (84)
Q Consensus        32 ~~DTaaAi~~~Gl~d~~sHIST~~~GGGA~LefLeGk~LPgVeAL~~   78 (84)
                      +|||++|++++|++|+||||||   ||||+|||||||+||||+||++
T Consensus       347 GGDt~aav~~~g~~d~~shiST---GGGA~Le~LeGk~LPgv~aL~~  390 (390)
T 1v6s_A          347 GGDSVAAVNRLGLKERFGHVST---GGGASLEFLEKGTLPGLEVLEG  390 (390)
T ss_dssp             SHHHHHHHHTTTCGGGSSEECC---SSSHHHHHHHHSCCHHHHTTCC
T ss_pred             ChHHHHHHHHcCCccCceEEeC---ChHHHHHHHcCCCcchHHHhcC
Confidence            6899999999999999999999   9999999999999999999974

>2cun_A Phosphoglycerate kinase; structural genomics, tanpaku 3000, structural genomics/proteomics initiative, RSGI, NPPSFA; HET: 3PG; 2.10A {Pyrococcus horikoshii}

Probab=99.57  E-value=1.3e-16  Score=127.98  Aligned_cols=44  Identities=36%  Similarity=0.560  Sum_probs=42.2

Q ss_pred             cccHHHHHHhhCCCCccEEeecCCCCccceecccCCCCCchhhhcccc
Q 037914           32 RWRLCCHVENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDEA   79 (84)
Q Consensus        32 ~~DTaaAi~~~Gl~d~~sHIST~~~GGGA~LefLeGk~LPgVeAL~~s   79 (84)
                      +|||++|++++|+ |+||||||   ||||+|||||||+||||+||+++
T Consensus       358 GGDt~aav~~~g~-d~~shiST---GGGA~Le~LeGk~LPgv~aL~~~  401 (410)
T 2cun_A          358 GGHSIASIQKYGI-TGITHIST---GGGAMLSFFAGEELPVLRALQIS  401 (410)
T ss_dssp             CGGGGGGGGGSCC-CCCSEECS---CSHHHHHHHTTCCCHHHHHHHHH
T ss_pred             ChHHHHHHHHhCC-CCcEEEcC---ChHHHHHHHcCCCCcHHHHHHHH
Confidence            6899999999999 99999999   99999999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	84
d16pka_	415	c.86.1.1 (A:) Phosphoglycerate kinase {Trypanosoma	4e-09
d1phpa_	394	c.86.1.1 (A:) Phosphoglycerate kinase {Bacillus st	5e-09
d1qpga_	415	c.86.1.1 (A:) Phosphoglycerate kinase {Baker's yea	7e-09
d1v6sa_	390	c.86.1.1 (A:) Phosphoglycerate kinase {Thermus the	8e-09
d1vpea_	398	c.86.1.1 (A:) Phosphoglycerate kinase {Thermotoga	2e-08
d1ltka_	417	c.86.1.1 (A:) Phosphoglycerate kinase {Malaria par	3e-08
d1hdia_	413	c.86.1.1 (A:) Phosphoglycerate kinase {Pig (Sus sc	4e-08

>d16pka_ c.86.1.1 (A:) Phosphoglycerate kinase {Trypanosoma brucei [TaxId: 5691]} Length = 415

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Trypanosoma brucei [TaxId: 5691]

 Score = 49.0 bits (116), Expect = 4e-09
 Identities = 21/40 (52%), Positives = 24/40 (60%), Gaps = 3/40 (7%)

Query: 39  VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDE 78
            E  G A  M+H+ST   GGGA LEL EGK LP V   D+
Sbjct: 378 AELSGEAKRMSHVST---GGGASLELLEGKTLPGVTVLDD 414

>d1phpa_ c.86.1.1 (A:) Phosphoglycerate kinase {Bacillus stearothermophilus [TaxId: 1422]} Length = 394

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 48.9 bits (116), Expect = 5e-09
 Identities = 23/40 (57%), Positives = 28/40 (70%), Gaps = 3/40 (7%)

Query: 39  VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDE 78
           VE  G+A  M+HIST   GGGA LE  EGK+LP VVA ++
Sbjct: 357 VEKFGLADKMDHIST---GGGASLEFMEGKQLPGVVALED 393

>d1qpga_ c.86.1.1 (A:) Phosphoglycerate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 415

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.2 bits (114), Expect = 7e-09
 Identities = 20/42 (47%), Positives = 24/42 (57%), Gaps = 3/42 (7%)

Query: 37  CHVENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDE 78
              +  GV   ++H+ST   GGGA LEL EGKELP V    E
Sbjct: 375 TVAKKYGVTDKISHVST---GGGASLELLEGKELPGVAFLSE 413

>d1v6sa_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermus thermophilus [TaxId: 274]} Length = 390

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Thermus thermophilus [TaxId: 274]

 Score = 48.2 bits (114), Expect = 8e-09
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)

Query: 39  VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFD 77
           V  +G+     H+ST   GGGA LE  E   LP +   +
Sbjct: 354 VNRLGLKERFGHVST---GGGASLEFLEKGTLPGLEVLE 389

>d1vpea_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermotoga maritima [TaxId: 2336]} Length = 398

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Thermotoga maritima [TaxId: 2336]

 Score = 47.0 bits (111), Expect = 2e-08
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 3/37 (8%)

Query: 39  VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVA 75
           V   G+    +H+ST   GGGA LE  EGKELP + +
Sbjct: 359 VNKFGLEDKFSHVST---GGGASLEFLEGKELPGIAS 392

>d1ltka_ c.86.1.1 (A:) Phosphoglycerate kinase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 417

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 46.6 bits (110), Expect = 3e-08
 Identities = 20/37 (54%), Positives = 25/37 (67%), Gaps = 3/37 (8%)

Query: 39  VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVA 75
           VE     + ++H+ST   GGGA LEL EGKELP V+A
Sbjct: 381 VEQQNKKNEISHVST---GGGASLELLEGKELPGVLA 414

>d1hdia_ c.86.1.1 (A:) Phosphoglycerate kinase {Pig (Sus scrofa) [TaxId: 9823]} Length = 413

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 46.3 bits (109), Expect = 4e-08
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 3/40 (7%)

Query: 39  VENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDE 78
                    ++H+ST   GGGA LEL EGK LP V A   
Sbjct: 376 CAKWNTEDNVSHVST---GGGASLELLEGKVLPGVDALSN 412

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	84
d16pka_	415	Phosphoglycerate kinase {Trypanosoma brucei [TaxId	99.59
d1hdia_	413	Phosphoglycerate kinase {Pig (Sus scrofa) [TaxId:	99.59
d1phpa_	394	Phosphoglycerate kinase {Bacillus stearothermophil	99.58
d1qpga_	415	Phosphoglycerate kinase {Baker's yeast (Saccharomy	99.58
d1vpea_	398	Phosphoglycerate kinase {Thermotoga maritima [TaxI	99.57
d1ltka_	417	Phosphoglycerate kinase {Malaria parasite (Plasmod	99.57
d1v6sa_	390	Phosphoglycerate kinase {Thermus thermophilus [Tax	99.55

>d16pka_ c.86.1.1 (A:) Phosphoglycerate kinase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.59  E-value=8.6e-17  Score=125.10  Aligned_cols=45  Identities=47%  Similarity=0.610  Sum_probs=43.3

Q ss_pred             cccHHHHHHhhCCCCccEEeecCCCCccceecccCCCCCchhhhcccc
Q 037914           32 RWRLCCHVENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDEA   79 (84)
Q Consensus        32 ~~DTaaAi~~~Gl~d~~sHIST~~~GGGA~LefLeGk~LPgVeAL~~s   79 (84)
                      +|||++|++++|+.++|+||||   ||||+|+||+|++||||+||+++
T Consensus       371 GGdT~aai~~~g~~~~~~hvST---GGGA~L~~L~G~~LPgi~aL~~k  415 (415)
T d16pka_         371 GGDSASAAELSGEAKRMSHVST---GGGASLELLEGKTLPGVTVLDDK  415 (415)
T ss_dssp             SHHHHHHHHHTTCTTTSSEECS---CHHHHHHHHTTCCCHHHHTSCBC
T ss_pred             CHHHHHHHHHcCCccCCcEEEC---CHHHHHHHHCCCCcchHHHhhcC
Confidence            6999999999999999999999   99999999999999999999864

>d1hdia_ c.86.1.1 (A:) Phosphoglycerate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.59  E-value=1e-16  Score=124.20  Aligned_cols=44  Identities=39%  Similarity=0.480  Sum_probs=42.7

Q ss_pred             cccHHHHHHhhCCCCccEEeecCCCCccceecccCCCCCchhhhccc
Q 037914           32 RWRLCCHVENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDE   78 (84)
Q Consensus        32 ~~DTaaAi~~~Gl~d~~sHIST~~~GGGA~LefLeGk~LPgVeAL~~   78 (84)
                      +|||++|++++|+.++|+||||   ||||+|+||||++||||+||++
T Consensus       369 GGdT~aai~~~g~~~~~~hvST---GGGA~L~~L~G~~LPgi~aL~~  412 (413)
T d1hdia_         369 GGDTATCCAKWNTEDNVSHVST---GGGASLELLEGKVLPGVDALSN  412 (413)
T ss_dssp             TTHHHHHHHHTTCTTTSSEECS---CHHHHHHHHTTCCCHHHHTSCB
T ss_pred             CHHHHHHHHHcCCcCCCcEEeC---CHHHHHHHHCCCCcchhhhhhc
Confidence            6999999999999999999999   9999999999999999999985

>d1phpa_ c.86.1.1 (A:) Phosphoglycerate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.58  E-value=1e-16  Score=124.37  Aligned_cols=45  Identities=51%  Similarity=0.747  Sum_probs=43.3

Q ss_pred             cccHHHHHHhhCCCCccEEeecCCCCccceecccCCCCCchhhhcccc
Q 037914           32 RWRLCCHVENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDEA   79 (84)
Q Consensus        32 ~~DTaaAi~~~Gl~d~~sHIST~~~GGGA~LefLeGk~LPgVeAL~~s   79 (84)
                      +|||++|++++|+.++|+||||   ||||+|+||||+.||||+||+++
T Consensus       350 GGdT~aai~~~g~~~~~shvST---GGGA~Le~L~G~~LPgi~aL~~k  394 (394)
T d1phpa_         350 GGDSAAAVEKFGLADKMDHIST---GGGASLEFMEGKQLPGVVALEDK  394 (394)
T ss_dssp             SHHHHHHHHHTTCGGGSSEECS---CTHHHHHHHTTCCCHHHHTSCBC
T ss_pred             CHHHHHHHHHcCCcCCCcEEec---CHHHHHHHHCCCCCchHHHhhcC
Confidence            6999999999999999999999   99999999999999999999864

>d1qpga_ c.86.1.1 (A:) Phosphoglycerate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=1.1e-16  Score=124.43  Aligned_cols=45  Identities=44%  Similarity=0.616  Sum_probs=43.6

Q ss_pred             cccHHHHHHhhCCCCccEEeecCCCCccceecccCCCCCchhhhcccc
Q 037914           32 RWRLCCHVENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDEA   79 (84)
Q Consensus        32 ~~DTaaAi~~~Gl~d~~sHIST~~~GGGA~LefLeGk~LPgVeAL~~s   79 (84)
                      +|||++|++++|+.++|+||||   ||||+|+||+|++||||+||+++
T Consensus       370 GGdT~aai~~~g~~~~~~hvST---GGGA~L~~L~G~~LPgi~aL~~~  414 (415)
T d1qpga_         370 GGDTATVAKKYGVTDKISHVST---GGGASLELLEGKELPGVAFLSEK  414 (415)
T ss_dssp             CHHHHHHHHHTTCGGGSSEECC---CTHHHHHHHTSCCCHHHHTSCBC
T ss_pred             CHHHHHHHHHcCCccCCceEeC---CHHHHHHHHCCCCCcHHHHHhhC
Confidence            6999999999999999999999   99999999999999999999875

>d1vpea_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.57  E-value=1.3e-16  Score=123.84  Aligned_cols=45  Identities=38%  Similarity=0.587  Sum_probs=43.6

Q ss_pred             cccHHHHHHhhCCCCccEEeecCCCCccceecccCCCCCchhhhcccc
Q 037914           32 RWRLCCHVENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDEA   79 (84)
Q Consensus        32 ~~DTaaAi~~~Gl~d~~sHIST~~~GGGA~LefLeGk~LPgVeAL~~s   79 (84)
                      +|||++|++++|+.++|+||||   ||||+|+||+|++||||+||+++
T Consensus       352 GGdT~aai~~~g~~~~f~hvST---GGGA~Le~L~G~~LPgi~aL~~~  396 (398)
T d1vpea_         352 GGDSAAAVNKFGLEDKFSHVST---GGGASLEFLEGKELPGIASMRIK  396 (398)
T ss_dssp             SHHHHHHHHHTTCGGGSSEEES---CHHHHHHHHTSSCCHHHHTSCBC
T ss_pred             CHHHHHHHHHcCCcCCceEEeC---CHHHHHHHHCCCCChHHHHHhhc
Confidence            6999999999999999999999   99999999999999999999875

>d1ltka_ c.86.1.1 (A:) Phosphoglycerate kinase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.57  E-value=1.4e-16  Score=124.10  Aligned_cols=44  Identities=45%  Similarity=0.614  Sum_probs=42.6

Q ss_pred             cccHHHHHHhhCCCCccEEeecCCCCccceecccCCCCCchhhhccc
Q 037914           32 RWRLCCHVENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFDE   78 (84)
Q Consensus        32 ~~DTaaAi~~~Gl~d~~sHIST~~~GGGA~LefLeGk~LPgVeAL~~   78 (84)
                      +|||++|++++|+.++|+||||   ||||+|+||+|++||||+||++
T Consensus       374 GGdT~aai~~~g~~~~~~hvST---GGGA~Le~L~G~~LPgieaL~~  417 (417)
T d1ltka_         374 GGDTASLVEQQNKKNEISHVST---GGGASLELLEGKELPGVLALSN  417 (417)
T ss_dssp             CSTTHHHHHHHTCGGGSSEECC---CSHHHHHHHTTCCCHHHHTSCC
T ss_pred             CHHHHHHHHhcCCccCCeEEEc---CHHHHHHHHCCCCCcceecccC
Confidence            6999999999999999999999   9999999999999999999974

>d1v6sa_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Phosphoglycerate kinase
superfamily: Phosphoglycerate kinase
family: Phosphoglycerate kinase
domain: Phosphoglycerate kinase
species: Thermus thermophilus [TaxId: 274]

Probab=99.55  E-value=1.5e-16  Score=123.31  Aligned_cols=43  Identities=33%  Similarity=0.504  Sum_probs=42.0

Q ss_pred             cccHHHHHHhhCCCCccEEeecCCCCccceecccCCCCCchhhhcc
Q 037914           32 RWRLCCHVENVGVASVMNHISTSGAGGGAGLELPEGKELPVVVAFD   77 (84)
Q Consensus        32 ~~DTaaAi~~~Gl~d~~sHIST~~~GGGA~LefLeGk~LPgVeAL~   77 (84)
                      +|||++|++++|+.++|+||||   ||||+|+||||++||||+||+
T Consensus       347 GGdT~aai~~~g~~~~fshVST---GGGA~Le~L~G~~LPgi~aL~  389 (390)
T d1v6sa_         347 GGDSVAAVNRLGLKERFGHVST---GGGASLEFLEKGTLPGLEVLE  389 (390)
T ss_dssp             SHHHHHHHHTTTCGGGSSEECC---SSSHHHHHHHHSCCHHHHTTC
T ss_pred             CHHHHHHHHHcCCcCCCcEEeC---CHHHHHHHHCCCCccchhhhc
Confidence            6999999999999999999999   999999999999999999996