Citrus Sinensis ID: 037984

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-
Protein Sequence
FLCINCCCPRMLADPAFLYKLLVEQAPIIGCTVWWELENRKDRRLINVCSLSFPNNILERSCPFREFDLQKRIHSLFYKAAELCMVGLTAGAVQGSLSNYLAGKKDRLSVTIPSVSTNALGYGAFLGLCANMRYQLLCGFDRAVINHFDVIGVALFLSTALRSLPLSLLRICLLIYISIYIDRLFWSNQITIVLMFCLLNF
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEcccccccccccccccccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccccHHHHHHcccccccccccHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEEcccccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEccccccHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccHHHHHHHHccccccccccccHEEHHHHHHccc
Coil and Loop (DISEMBL)
flcincccprmladpAFLYKLLVEQAPIIGCTVWWelenrkdrrlinvcslsfpnnilerscpfrefdLQKRIHSLFYKAAELCMVGLTAGAVQGSLsnylagkkdrlsvtipsvstnalgyGAFLGLCANMRYQLLCGFDRAVINHFDVIGVALFLSTALRSLPLSLLRICLLIYISIYIDRLFWSNQITIVLMFCLLNF
Flexible Loop (DISEMBL)
flcincccprmLADPAFLYKLLVEQAPIIGCTVWWELENRKDRRLINVCSlsfpnnilersCPFREFDLQKRIHSLFYKAAELCMVGLTAGAVQGSLSNYLAGKKDRLSVTIPSVSTNALGYGAFLGLCANMRYQLLCGFDRAVINHFDVIGVALFLSTALRSLPLSLLRICLLIYISIYIDRLFWSNQITIVLMFCLLNF
Low Complexity Region (SEG)
FLCINCCCPRMLADPAFLYKLLVEQAPIIGCTVWWELENRKDRRLINVCSLSFPNNILERSCPFREFDLQKRIHSLFYKAAELCMVGLTAGAVQGSLSNYLAGKKDRLSVTIPSVSTNALGYGAFLGLCANMRYQLLCGFDRAVINHFDVIGVALFlstalrslplsllriclliyisiyiDRLFWSNQITIVLMFCLLNF
Disordered region (IsUnstruct)
*LCINCCCPRMLADPAFLYKLLVEQAPIIGCTVWWELENRKDRRLINVCSLSFPNNILERSCPFREFDLQKRIHSLFYKAAELCMVGLTAGAVQGSLSNYLAGKKDRLSVTIPSVSTNALGYGAFLGLCANMRYQLLCGFDRAVINHFDVIGVALFLSTALRSLPLSLLRICLLIYISIYIDRLFWSNQITIVLMFCLL**
Disordered Region (DISOPRED)
FLCINCCCPRMLADPAFLYKLLVEQAPIIGCTVWWELENRKDRRLINVCSLSFPNNILERSCPFREFDLQKRIHSLFYKAAELCMVGLTAGAVQGSLSNYLAGKKDRLSVTIPSVSTNALGYGAFLGLCANMRYQLLCGFDRAVINHFDVIGVALFLSTALRSLPLSLLRICLLIYISIYIDRLFWSNQITIVLMFCLLNF
Disordered Region (DISEMBL)
FLCINCCCPRMLADPAFLYKLLVEQAPIIGCTVWWELENRKDRRLINVCSLSFPNNILERSCPFREFDLQKRIHSLFYKAAELCMVGLTAGAVQGSLSNYLAGKKDRLSVTIPSVSTNALGYGAFLGLCANMRYQLLCGFDRAVINHFDVIGVALFLSTALRSLPLSLLRICLLIYISIYIDRLFWSNQITIVLMFCLLNF
Disordered Region (DISPRO)
FLCINCCCPRMLADPAFLYKLLVEQAPIIGCTVWWELENRKDRRLINVCSLSFPNNILERSCPFREFDLQKRIHSLFYKAAELCMVGLTAGAVQGSLSNYLAGKKDRLSVTIPSVSTNALGYGAFLGLCANMRYQLLCGFDRAVINHFDVIGVALFLSTALRSLPLSLLRICLLIYISIYIDRLFWSNQITIVLMFCLLNF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
FLCINCCCPRMLADPAFLYKLLVEQAPIIGCTVWWELENRKDRRLINVCSLSFPNNILERSCPFREFDLQKRIHSLFYKAAELCMVGLTAGAVQGSLSNYLAGKKDRLSVTIPSVSTNALGYGAFLGLCANMRYQLLCGFDRAVINHFDVIGVALFLSTALRSLPLSLLRICLLIYISIYIDRLFWSNQITIVLMFCLLNF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	201
224054268	531	predicted protein [Populus trichocarpa]	0.900	0.340	0.587	2e-62
449444691	534	PREDICTED: uncharacterized protein LOC10	0.900	0.338	0.575	1e-61
224070482	527	predicted protein [Populus trichocarpa]	0.900	0.343	0.582	3e-61
298204572	440	unnamed protein product [Vitis vinifera]	0.900	0.411	0.570	1e-60
225448041	531	PREDICTED: uncharacterized protein LOC10	0.900	0.340	0.570	1e-60
255581203	525	conserved hypothetical protein [Ricinus	0.900	0.344	0.596	1e-59
297812665	520	hypothetical protein ARALYDRAFT_910514 [	0.900	0.348	0.538	4e-57
9759209	356	unnamed protein product [Arabidopsis tha	0.900	0.508	0.538	6e-57
110739672	521	hypothetical protein [Arabidopsis thalia	0.900	0.347	0.538	1e-56
22327037	521	uncharacterized protein [Arabidopsis tha	0.900	0.347	0.538	1e-56

>gi|224054268|ref|XP_002298175.1| predicted protein [Populus trichocarpa] gi|222845433|gb|EEE82980.1| predicted protein [Populus trichocarpa]

 Score =  243 bits (621), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 128/218 (58%), Positives = 148/218 (67%), Gaps = 37/218 (16%)

Query: 10  RMLADPAFLYKLLVEQAPIIGCTVWWELENRKDR-------RLINVCSLS---------- 52
           RMLADPAFLY+LL+EQA  IGC+VWWEL+NRKDR        LINV +++          
Sbjct: 249 RMLADPAFLYRLLLEQAATIGCSVWWELKNRKDRIKQEWDLALINVLTITACNAFVVWTL 308

Query: 53  --------------------FPNNILERSCPFREFDLQKRIHSLFYKAAELCMVGLTAGA 92
                                PNNI E S P REFDLQKR+HS FYKAAELC+VGLTAGA
Sbjct: 309 APCRSYGNTFQFDLQNTLQKLPNNIFEMSYPLREFDLQKRVHSFFYKAAELCLVGLTAGA 368

Query: 93  VQGSLSNYLAGKKDRLSVTIPSVSTNALGYGAFLGLCANMRYQLLCGFDRAVINHFDVIG 152
           +QGSL+N LA KKDRLSVT+P VST ALGYGAFLGL AN+RYQLLCGFDRAV+NHFDVIG
Sbjct: 369 IQGSLTNTLARKKDRLSVTVPPVSTYALGYGAFLGLYANLRYQLLCGFDRAVVNHFDVIG 428

Query: 153 VALFLSTALRSLPLSLLRICLLIYISIYIDRLFWSNQI 190
           VALF STALR L   +     L ++ +  D L  S+ +
Sbjct: 429 VALFFSTALRILNTQVGETSRLAWLGVEADPLVQSDDL 466

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444691|ref|XP_004140107.1| PREDICTED: uncharacterized protein LOC101205574 [Cucumis sativus] gi|449490489|ref|XP_004158620.1| PREDICTED: uncharacterized LOC101205574 [Cucumis sativus]

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 126/219 (57%), Positives = 150/219 (68%), Gaps = 38/219 (17%)

Query: 10  RMLADPAFLYKLLVEQAPIIGCTVWWELENRKDR-------RLINVCSLS---------- 52
           RMLADP+FLYKLL+EQA  IGC  WWE++NRKDR        LINV +++          
Sbjct: 249 RMLADPSFLYKLLLEQAATIGCAAWWEIKNRKDRIKQEWDLALINVLTVTACNAIVVWSL 308

Query: 53  --------------------FPNNILERSCPFREFDLQKRIHSLFYKAAELCMVGLTAGA 92
                                PNNI E+S P REFDLQKRIHS FYKAAELCMVG+TAGA
Sbjct: 309 APCRSYGNTFRFDLQNTLQKLPNNIFEKSYPMREFDLQKRIHSFFYKAAELCMVGITAGA 368

Query: 93  VQGSLSNYLAGKK-DRLSVTIPSVSTNALGYGAFLGLCANMRYQLLCGFDRAVINHFDVI 151
            QG LSN+L+ KK +RLSV++P+VSTNALGYGAFLGL AN+RYQLLCGFDRA+INHFDVI
Sbjct: 369 AQGVLSNFLSSKKQERLSVSVPTVSTNALGYGAFLGLYANLRYQLLCGFDRAMINHFDVI 428

Query: 152 GVALFLSTALRSLPLSLLRICLLIYISIYIDRLFWSNQI 190
           GVALFLS+A+R L + L     L ++ I  D L  S ++
Sbjct: 429 GVALFLSSAMRVLNVQLGERSRLAWLGIEADPLVQSREL 467

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224070482|ref|XP_002303156.1| predicted protein [Populus trichocarpa] gi|222840588|gb|EEE78135.1| predicted protein [Populus trichocarpa]

 Score =  240 bits (612), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 127/218 (58%), Positives = 147/218 (67%), Gaps = 37/218 (16%)

Query: 10  RMLADPAFLYKLLVEQAPIIGCTVWWELENRKDR-------RLINVCSLS---------- 52
           RM+ADPAFLY+LL+EQA  +GC+VWWEL+NRKDR        LINV +++          
Sbjct: 240 RMIADPAFLYRLLLEQAATVGCSVWWELKNRKDRIKQEWDLALINVLTVTACNALVVWSL 299

Query: 53  --------------------FPNNILERSCPFREFDLQKRIHSLFYKAAELCMVGLTAGA 92
                                PNNI E+S P REFDLQKRIHS FYKAAELCMVGLTAGA
Sbjct: 300 APCRSYGNTFQFDLQNTLQKLPNNIFEKSYPLREFDLQKRIHSFFYKAAELCMVGLTAGA 359

Query: 93  VQGSLSNYLAGKKDRLSVTIPSVSTNALGYGAFLGLCANMRYQLLCGFDRAVINHFDVIG 152
           +QGSL+N LA KKDRLSVTIP VST ALGYGAFLGL AN+RYQLLCG DRAV+NHFDVIG
Sbjct: 360 MQGSLTNLLARKKDRLSVTIPPVSTYALGYGAFLGLYANLRYQLLCGIDRAVVNHFDVIG 419

Query: 153 VALFLSTALRSLPLSLLRICLLIYISIYIDRLFWSNQI 190
           VAL  STALR L   +     L ++ +  D L  S+ +
Sbjct: 420 VALVFSTALRILNAQVGETSRLAWLGLEPDPLVQSDDL 457

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298204572|emb|CBI23847.3| unnamed protein product [Vitis vinifera]

 Score =  238 bits (606), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 125/219 (57%), Positives = 146/219 (66%), Gaps = 38/219 (17%)

Query: 10  RMLADPAFLYKLLVEQAPIIGCTVWWELENRKDR-------RLINVCSLS---------- 52
           RM+ADPAF Y+LL+EQ   IGC+VWWEL+NRK+R        LINV ++S          
Sbjct: 155 RMIADPAFAYRLLLEQVTTIGCSVWWELKNRKERIKQEWDLALINVLTVSACNAIVVWSL 214

Query: 53  --------------------FPNNILERSCPFREFDLQKRIHSLFYKAAELCMVGLTAGA 92
                                PNNI E+S P REFDLQKRIHS FYKAAE CMVGLTAGA
Sbjct: 215 APCRSYGNTFRFDLQNTLQKLPNNIFEKSYPLREFDLQKRIHSFFYKAAEFCMVGLTAGA 274

Query: 93  VQGSLSNYLAG-KKDRLSVTIPSVSTNALGYGAFLGLCANMRYQLLCGFDRAVINHFDVI 151
            QG+L+N+ A  KKDRLSVTIP+VSTNALGYGAFLGL AN+RYQLLCG DR +INHFDVI
Sbjct: 275 AQGALTNFAASKKKDRLSVTIPTVSTNALGYGAFLGLYANLRYQLLCGVDRVMINHFDVI 334

Query: 152 GVALFLSTALRSLPLSLLRICLLIYISIYIDRLFWSNQI 190
           GVALF STALR L + L     L ++ +  D L  S+ +
Sbjct: 335 GVALFFSTALRILNVQLGETSRLAWLGVEADPLAQSDNL 373

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448041|ref|XP_002273537.1| PREDICTED: uncharacterized protein LOC100246257 [Vitis vinifera]

 Score =  238 bits (606), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 125/219 (57%), Positives = 146/219 (66%), Gaps = 38/219 (17%)

Query: 10  RMLADPAFLYKLLVEQAPIIGCTVWWELENRKDR-------RLINVCSLS---------- 52
           RM+ADPAF Y+LL+EQ   IGC+VWWEL+NRK+R        LINV ++S          
Sbjct: 246 RMIADPAFAYRLLLEQVTTIGCSVWWELKNRKERIKQEWDLALINVLTVSACNAIVVWSL 305

Query: 53  --------------------FPNNILERSCPFREFDLQKRIHSLFYKAAELCMVGLTAGA 92
                                PNNI E+S P REFDLQKRIHS FYKAAE CMVGLTAGA
Sbjct: 306 APCRSYGNTFRFDLQNTLQKLPNNIFEKSYPLREFDLQKRIHSFFYKAAEFCMVGLTAGA 365

Query: 93  VQGSLSNYLAG-KKDRLSVTIPSVSTNALGYGAFLGLCANMRYQLLCGFDRAVINHFDVI 151
            QG+L+N+ A  KKDRLSVTIP+VSTNALGYGAFLGL AN+RYQLLCG DR +INHFDVI
Sbjct: 366 AQGALTNFAASKKKDRLSVTIPTVSTNALGYGAFLGLYANLRYQLLCGVDRVMINHFDVI 425

Query: 152 GVALFLSTALRSLPLSLLRICLLIYISIYIDRLFWSNQI 190
           GVALF STALR L + L     L ++ +  D L  S+ +
Sbjct: 426 GVALFFSTALRILNVQLGETSRLAWLGVEADPLAQSDNL 464

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581203|ref|XP_002531414.1| conserved hypothetical protein [Ricinus communis] gi|223528964|gb|EEF30956.1| conserved hypothetical protein [Ricinus communis]

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 121/203 (59%), Positives = 144/203 (70%), Gaps = 22/203 (10%)

Query: 10  RMLADPAFLYKLLVEQAPIIGCTVWWELENRKDR-------RLINVCSLS---------- 52
           RM+ADPAFLY+LL+EQA  +GC+VWWEL+NRKDR        L+NV + S          
Sbjct: 260 RMIADPAFLYRLLLEQAATVGCSVWWELKNRKDRIKQEWDLALVNVLTASACNAIVVWSL 319

Query: 53  ----FPNNILERSCPFREFDLQKRIHSLFYKAAELCMVGLTAGAVQGSLSNYLAG-KKDR 107
                PNNI E+S P REFDLQKR+HS FYKAAELC+VGL+AGA+QG LSN LA  KKDR
Sbjct: 320 APCQTPNNIFEKSYPLREFDLQKRVHSFFYKAAELCVVGLSAGAIQGQLSNVLASRKKDR 379

Query: 108 LSVTIPSVSTNALGYGAFLGLCANMRYQLLCGFDRAVINHFDVIGVALFLSTALRSLPLS 167
           LSVT+P VS  A GYGAFLGL AN+RYQLLCG DRA+++HFDVIGVALF STALR L + 
Sbjct: 380 LSVTVPPVSNYARGYGAFLGLYANLRYQLLCGMDRALVSHFDVIGVALFFSTALRILNVQ 439

Query: 168 LLRICLLIYISIYIDRLFWSNQI 190
           +     L +I    D L  S+ +
Sbjct: 440 VGETSRLAWIGAEADPLVQSDDL 462

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297812665|ref|XP_002874216.1| hypothetical protein ARALYDRAFT_910514 [Arabidopsis lyrata subsp. lyrata] gi|297320053|gb|EFH50475.1| hypothetical protein ARALYDRAFT_910514 [Arabidopsis lyrata subsp. lyrata]

 Score =  226 bits (576), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 118/219 (53%), Positives = 147/219 (67%), Gaps = 38/219 (17%)

Query: 10  RMLADPAFLYKLLVEQAPIIGCTVWWELENRKDR-------RLINVCSLS---------- 52
           RMLADPAFLYKLL+EQA  +GC+VWWE++NRK+R        LINV ++S          
Sbjct: 239 RMLADPAFLYKLLLEQAATVGCSVWWEVKNRKNRLKEEWDLALINVLTVSACNAAAVWLL 298

Query: 53  --------------------FPNNILERSCPFREFDLQKRIHSLFYKAAELCMVGLTAGA 92
                                PNN+ E S P REFDLQKR HSLFYKAAEL ++GL AG 
Sbjct: 299 APCRSYGNTFRFDLQNTLQKLPNNLFEMSYPLREFDLQKRFHSLFYKAAELSILGLAAGT 358

Query: 93  VQGSLSNYLAG-KKDRLSVTIPSVSTNALGYGAFLGLCANMRYQLLCGFDRAVINHFDVI 151
           +QGSLSN+LAG KK+R+SVT+PS+STNALGYGAFLG+ AN+RYQLLCGF+R V +HFDVI
Sbjct: 359 LQGSLSNFLAGKKKNRVSVTVPSISTNALGYGAFLGIYANLRYQLLCGFERGVSSHFDVI 418

Query: 152 GVALFLSTALRSLPLSLLRICLLIYISIYIDRLFWSNQI 190
           GVALF  TALR + + L      +++ +  D L  S+ +
Sbjct: 419 GVALFFGTALRIMNVQLGEKSRQVWLGVEADPLAQSDDL 457

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9759209|dbj|BAB09651.1| unnamed protein product [Arabidopsis thaliana]

 Score =  226 bits (575), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 118/219 (53%), Positives = 146/219 (66%), Gaps = 38/219 (17%)

Query: 10  RMLADPAFLYKLLVEQAPIIGCTVWWELENRKDR-------RLINVCSLS---------- 52
           RMLADPAFLYKLL+EQA  +GC+VWWE++NRK+R        LINV ++S          
Sbjct: 75  RMLADPAFLYKLLLEQAATVGCSVWWEVKNRKNRLKEEWDLALINVLTVSACNAAAVWLL 134

Query: 53  --------------------FPNNILERSCPFREFDLQKRIHSLFYKAAELCMVGLTAGA 92
                                PNN+ E S P REFDLQKR HSLFYKAAEL ++GL AG 
Sbjct: 135 APCRSYGNTFRFDLQNTLQKLPNNLFEMSYPLREFDLQKRFHSLFYKAAELSILGLAAGT 194

Query: 93  VQGSLSNYLAG-KKDRLSVTIPSVSTNALGYGAFLGLCANMRYQLLCGFDRAVINHFDVI 151
           +QGSLSN LAG KK+R+SVT+PS+STNALGYGAFLG+ AN+RYQLLCGF+R V +HFDVI
Sbjct: 195 LQGSLSNVLAGKKKNRVSVTVPSISTNALGYGAFLGIYANLRYQLLCGFERGVSSHFDVI 254

Query: 152 GVALFLSTALRSLPLSLLRICLLIYISIYIDRLFWSNQI 190
           GVALF  TALR + + L      +++ +  D L  S+ +
Sbjct: 255 GVALFFGTALRIMNVQLGEKSRQVWLGVEADPLAQSDDL 293

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110739672|dbj|BAF01744.1| hypothetical protein [Arabidopsis thaliana]

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 118/219 (53%), Positives = 146/219 (66%), Gaps = 38/219 (17%)

Query: 10  RMLADPAFLYKLLVEQAPIIGCTVWWELENRKDR-------RLINVCSLS---------- 52
           RMLADPAFLYKLL+EQA  +GC+VWWE++NRK+R        LINV ++S          
Sbjct: 240 RMLADPAFLYKLLLEQAATVGCSVWWEVKNRKNRLKEKWDLALINVLTVSACNAAAVWLL 299

Query: 53  --------------------FPNNILERSCPFREFDLQKRIHSLFYKAAELCMVGLTAGA 92
                                PNN+ E S P REFDLQKR HSLFYKAAEL ++GL AG 
Sbjct: 300 APCRSYGNTFRFDLQNTLQKLPNNLFEMSYPLREFDLQKRFHSLFYKAAELSILGLAAGT 359

Query: 93  VQGSLSNYLAG-KKDRLSVTIPSVSTNALGYGAFLGLCANMRYQLLCGFDRAVINHFDVI 151
           +QGSLSN LAG KK+R+SVT+PS+STNALGYGAFLG+ AN+RYQLLCGF+R V +HFDVI
Sbjct: 360 LQGSLSNVLAGKKKNRVSVTVPSISTNALGYGAFLGIYANLRYQLLCGFERGVSSHFDVI 419

Query: 152 GVALFLSTALRSLPLSLLRICLLIYISIYIDRLFWSNQI 190
           GVALF  TALR + + L      +++ +  D L  S+ +
Sbjct: 420 GVALFFGTALRIMNVQLGEKSRQVWLGVEADPLAQSDDL 458

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22327037|ref|NP_197857.2| uncharacterized protein [Arabidopsis thaliana] gi|13877883|gb|AAK44019.1|AF370204_1 unknown protein [Arabidopsis thaliana] gi|15912313|gb|AAL08290.1| AT5g24690/MXC17_8 [Arabidopsis thaliana] gi|22136914|gb|AAM91801.1| unknown protein [Arabidopsis thaliana] gi|110739396|dbj|BAF01609.1| hypothetical protein [Arabidopsis thaliana] gi|110739479|dbj|BAF01649.1| hypothetical protein [Arabidopsis thaliana] gi|110739599|dbj|BAF01708.1| hypothetical protein [Arabidopsis thaliana] gi|110739615|dbj|BAF01716.1| hypothetical protein [Arabidopsis thaliana] gi|110739722|dbj|BAF01768.1| hypothetical protein [Arabidopsis thaliana] gi|110739756|dbj|BAF01785.1| hypothetical protein [Arabidopsis thaliana] gi|110739958|dbj|BAF01883.1| hypothetical protein [Arabidopsis thaliana] gi|110739966|dbj|BAF01887.1| hypothetical protein [Arabidopsis thaliana] gi|110740027|dbj|BAF01917.1| hypothetical protein [Arabidopsis thaliana] gi|110740029|dbj|BAF01918.1| hypothetical protein [Arabidopsis thaliana] gi|110740431|dbj|BAF02110.1| hypothetical protein [Arabidopsis thaliana] gi|110740452|dbj|BAF02120.1| hypothetical protein [Arabidopsis thaliana] gi|110741324|dbj|BAF02212.1| hypothetical protein [Arabidopsis thaliana] gi|332005967|gb|AED93350.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 118/219 (53%), Positives = 146/219 (66%), Gaps = 38/219 (17%)

Query: 10  RMLADPAFLYKLLVEQAPIIGCTVWWELENRKDR-------RLINVCSLS---------- 52
           RMLADPAFLYKLL+EQA  +GC+VWWE++NRK+R        LINV ++S          
Sbjct: 240 RMLADPAFLYKLLLEQAATVGCSVWWEVKNRKNRLKEEWDLALINVLTVSACNAAAVWLL 299

Query: 53  --------------------FPNNILERSCPFREFDLQKRIHSLFYKAAELCMVGLTAGA 92
                                PNN+ E S P REFDLQKR HSLFYKAAEL ++GL AG 
Sbjct: 300 APCRSYGNTFRFDLQNTLQKLPNNLFEMSYPLREFDLQKRFHSLFYKAAELSILGLAAGT 359

Query: 93  VQGSLSNYLAG-KKDRLSVTIPSVSTNALGYGAFLGLCANMRYQLLCGFDRAVINHFDVI 151
           +QGSLSN LAG KK+R+SVT+PS+STNALGYGAFLG+ AN+RYQLLCGF+R V +HFDVI
Sbjct: 360 LQGSLSNVLAGKKKNRVSVTVPSISTNALGYGAFLGIYANLRYQLLCGFERGVSSHFDVI 419

Query: 152 GVALFLSTALRSLPLSLLRICLLIYISIYIDRLFWSNQI 190
           GVALF  TALR + + L      +++ +  D L  S+ +
Sbjct: 420 GVALFFGTALRIMNVQLGEKSRQVWLGVEADPLAQSDDL 458

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	201
TAIR|locus:2176826	521	AT5G24690 "AT5G24690" [Arabido	0.512	0.197	0.759	2.6e-38
TAIR|locus:2158155	433	RER1 "AT5G22790" [Arabidopsis	0.492	0.228	0.323	6e-13
TAIR|locus:2065649	432	LCD1 "AT2G37860" [Arabidopsis	0.462	0.215	0.275	8.7e-08
TAIR|locus:2078446	745	AT3G56140 "AT3G56140" [Arabido	0.432	0.116	0.360	6.9e-07
TAIR|locus:2063136	735	AT2G40400 [Arabidopsis thalian	0.432	0.118	0.340	1.1e-05
TAIR|locus:2077838	337	AT3G08640 "AT3G08640" [Arabido	0.407	0.243	0.308	0.00039
TAIR|locus:505006615	386	AT5G12470 "AT5G12470" [Arabido	0.422	0.220	0.279	0.0009

TAIR|locus:2176826 AT5G24690 "AT5G24690" [Arabidopsis thaliana (taxid:3702)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 79/104 (75%), Positives = 91/104 (87%)

Query:    54 PNNILERSCPFREFDLQKRIHSLFYKAAELCMVGLTAGAVQGSLSNYLAGKK-DRLSVTI 112
             PNN+ E S P REFDLQKR HSLFYKAAEL ++GL AG +QGSLSN LAGKK +R+SVT+
Sbjct:   321 PNNLFEMSYPLREFDLQKRFHSLFYKAAELSILGLAAGTLQGSLSNVLAGKKKNRVSVTV 380

Query:   113 PSVSTNALGYGAFLGLCANMRYQLLCGFDRAVINHFDVIGVALF 156
             PS+STNALGYGAFLG+ AN+RYQLLCGF+R V +HFDVIGVALF
Sbjct:   381 PSISTNALGYGAFLGIYANLRYQLLCGFERGVSSHFDVIGVALF 424

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2158155 RER1 "AT5G22790" [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 6.0e-13, Sum P(2) = 6.0e-13
 Identities = 34/105 (32%), Positives = 54/105 (51%)

Query:    45 LINVCSLSFPNNILERSCPFREFDLQKRIHSLFYKAAELCMVGLTAGAVQGSLSNYL--- 101
             L   C+ S P+++ E   P  +F + +RI + FYK      VG   G +   ++N +   
Sbjct:   288 LKRACA-SLPSSVFEAERPGCKFSVNQRIATFFYKGLLYGSVGFGCGLIGQGIANLIMTA 346

Query:   102 --AGKKDRLSVTIPSVSTNALGYGAFLGLCANMRYQLLCGFDRAV 144
               + KK    V IP +  +A  +G FLGL +N RYQ++ G +R V
Sbjct:   347 KRSVKKSEEDVPIPPLFESAALWGVFLGLSSNARYQIINGLERVV 391

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2065649 LCD1 "AT2G37860" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 8.7e-08, Sum P(2) = 8.7e-08
 Identities = 27/98 (27%), Positives = 49/98 (50%)

Query:    52 SFPNNILERSCPFREFDLQKRIHSLFYKAAELCMVGLTAGAVQGSLSNYLAGKKDRLS-- 109
             + P+++ E   P   F  Q+R+ + FYK      VG   G V   ++N +   K  ++  
Sbjct:   293 ALPSSVFEAERPGCRFSAQQRLATYFYKGIMYGAVGFGCGIVGQGIANLIMTAKRNINKS 352

Query:   110 ---VTIPSVSTNALGYGAFLGLCANMRYQLLCGFDRAV 144
                + +P +  +A  +G FL + +N RYQ++ G +R V
Sbjct:   353 EENIPVPPLIKSAALWGVFLSVSSNTRYQIINGLERVV 390

GO:0003674 "molecular_function" evidence=ND

GO:0048366 "leaf development" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2078446 AT3G56140 "AT3G56140" [Arabidopsis thaliana (taxid:3702)]

 Score = 108 (43.1 bits), Expect = 6.9e-07, Sum P(2) = 6.9e-07
 Identities = 35/97 (36%), Positives = 49/97 (50%)

Query:    52 SFPNNILERSCPFREFDLQKRIHSLFYKAAELCMVGLTAGAVQGSLSNYL--AGK--KDR 107
             S P+N  ++S   RE++L  RI S+     +L  VG+ +       SN L  A K  K  
Sbjct:   567 SIPDNAFQKSLAGREWNLNLRIASVIVGGLKLAGVGVVSSFAAVGASNALNIARKVIKPE 626

Query:   108 LSVT-----IPSVSTNALGYGAFLGLCANMRYQLLCG 139
             L V       P + T A+ YG FLG  AN+RYQ++ G
Sbjct:   627 LVVAEKPKRSPLLKT-AMVYGGFLGTSANLRYQIIAG 662

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009543 "chloroplast thylakoid lumen" evidence=ISS

TAIR|locus:2063136 AT2G40400 [Arabidopsis thaliana (taxid:3702)]

 Score = 99 (39.9 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
 Identities = 33/97 (34%), Positives = 49/97 (50%)

Query:    52 SFPNNILERSCPFREFDLQKRIHSLFYKAAELCMVGLTAG--AVQGSLSNYLAGK--KDR 107
             S P+N  ++S   +E+ L  RI S+     +L  VG+ +   AV  S + Y   K  K  
Sbjct:   558 SIPDNAFQKSLGGQEWTLSLRIASVIIGGLKLAGVGVVSSFAAVGSSNALYAIRKFIKPE 617

Query:   108 LSV-----TIPSVSTNALGYGAFLGLCANMRYQLLCG 139
             L V       P + T AL YG +LG  +N+RYQ++ G
Sbjct:   618 LGVGEQAKRSPMLKT-ALVYGGYLGTSSNIRYQIIAG 653

GO:0009507 "chloroplast" evidence=ISM

GO:0009543 "chloroplast thylakoid lumen" evidence=ISS

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

TAIR|locus:2077838 AT3G08640 "AT3G08640" [Arabidopsis thaliana (taxid:3702)]

 Score = 96 (38.9 bits), Expect = 0.00039, Sum P(2) = 0.00039
 Identities = 29/94 (30%), Positives = 44/94 (46%)

Query:    60 RSCP----FRE--FDLQKRIHSLFYKAAELCMVGLTAGAVQGSLSNYLAGKKDRLSVTI- 112
             R+CP    F +  F +  R  +L YK      VGL AG V  ++SN L   + ++  +  
Sbjct:   188 RNCPSSHMFEQGSFTVMNRFGTLVYKGMVFASVGLAAGLVGTAISNGLIMLRKKMDPSFE 247

Query:   113 -----PSVSTNALGYGAFLGLCANMRYQLLCGFD 141
                  P    N+L +   +G+ AN RYQ L G +
Sbjct:   248 TPNKPPPTVLNSLTWATHMGVSANARYQTLNGIE 281

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:505006615 AT5G12470 "AT5G12470" [Arabidopsis thaliana (taxid:3702)]

 Score = 100 (40.3 bits), Expect = 0.00090, Sum P(2) = 0.00090
 Identities = 26/93 (27%), Positives = 53/93 (56%)

Query:    54 PNNILERSCPFREFDLQKRIHSLFYKAAELCMVGLTAGAVQGSLSN-YLAGKK--DRLSV 110
             P+N  + +     + L +R+ ++    A+L  VG T+  V  +++N ++  +K  D+ S 
Sbjct:   245 PDNAFQVALSGTSYTLLQRLGAITRNGAKLFAVGTTSSLVGTAITNAFIKARKAVDQNSE 304

Query:   111 ----TIPSVSTNALGYGAFLGLCANMRYQLLCG 139
                 T+P VST+ + YG ++ + +N+RYQ++ G
Sbjct:   305 GEVETVPIVSTS-VAYGVYMAVSSNLRYQIVAG 336

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009536 "plastid" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_I9848 hypothetical protein (532 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	201
pfam11891	179	pfam11891, DUF3411, Domain of unknown function (DU	9e-39

>gnl|CDD|221294 pfam11891, DUF3411, Domain of unknown function (DUF3411)

 Score =  130 bits (330), Expect = 9e-39
 Identities = 54/178 (30%), Positives = 80/178 (44%), Gaps = 46/178 (25%)

Query: 10  RMLADPAFLYKLLVEQAPIIGCTVWWELENRKDR-------------------------- 43
           R+LADP+FL+KL +E+   I      E+E R +                           
Sbjct: 2   RLLADPSFLFKLAMEEVIDICAATVAEVEKRGENFWAEFDLVAADLLVGSVVNFALVYLL 61

Query: 44  --------------RLINVCSLSFPNNILERSCPFREFDLQKRIHSLFYKAAELCMVGLT 89
                           +     S P+N+ E+  P R + LQ+R  ++FYK A+L  VG  
Sbjct: 62  APTRSFGSTAAEMAGGLRKFLGSLPSNVFEKGLPGRSYSLQQRFGTVFYKGAKLAAVGFI 121

Query: 90  AGAVQGSLSNYLAGKKDRL------SVTIPSVSTNALGYGAFLGLCANMRYQLLCGFD 141
           AG V  ++SN L   +  +      SV +P +   AL +GAFLG+ AN+RYQLL G +
Sbjct: 122 AGLVGQAISNALMAARKAVDKNSEESVKVPPLFKTALLWGAFLGVSANLRYQLLNGLE 179

This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 168 to 186 amino acids in length. This domain has a conserved RYQ sequence motif. Length = 179

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	201
PF11891	180	DUF3411: Domain of unknown function (DUF3411); Int	100.0

>PF11891 DUF3411: Domain of unknown function (DUF3411); InterPro: IPR021825 This presumed domain is functionally uncharacterised

Probab=100.00  E-value=2.1e-57  Score=381.17  Aligned_cols=133  Identities=44%  Similarity=0.754  Sum_probs=125.7

Q ss_pred             hhhhcCchhhHHHHHHHhhhhHHHHHHHHhhcCCc---------------eEeeeeec----------------------
Q 037984            9 PRMLADPAFLYKLLVEQAPIIGCTVWWELENRKDR---------------RLINVCSL----------------------   51 (201)
Q Consensus         9 ~RllADP~Fl~Kl~~E~~i~i~~~~~~E~~~R~~~---------------~i~nf~tv----------------------   51 (201)
                      |||+|||+|||||++||+||++|+++|||++|||+               +++||++|                      
T Consensus         1 ~RllADP~Fl~Kl~~E~~i~i~~~~~~e~~~R~e~f~~E~d~v~~d~v~~~i~n~~lv~llAPt~s~~~~~~~~~~~~~~   80 (180)
T PF11891_consen    1 ERLLADPSFLFKLAIEEVIGIGCATAAEYAKRGERFWNELDFVFSDVVVGSIVNFALVWLLAPTRSFGSPAASSPGGGLQ   80 (180)
T ss_pred             CcccccchHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHhccchHhhCcccccccchHHH
Confidence            79999999999999999999999999999999999               57888876                      


Q ss_pred             ----cCChhhhhhcCCCCccchhhhHHHHHhhchhhhhhhhhHhhhhHHHHHHHhh--ccC----CCCCCCCchhhhhHH
Q 037984           52 ----SFPNNILERSCPFREFDLQKRIHSLFYKAAELCMVGLTAGAVQGSLSNYLAG--KKD----RLSVTIPSVSTNALG  121 (201)
Q Consensus        52 ----slP~n~Fq~~~pg~~fsl~qR~~~~~~kg~~l~~VG~~ag~vg~~lsn~L~~--kk~----~~s~~~ppv~~ta~~  121 (201)
                          +||+|+||+++||++||++||++|++|||++|++||++||++|+++||+|++  ||.    ++++|+|||++||++
T Consensus        81 ~~~~~~P~n~Fq~~~~g~~fsl~qR~~~~~~kg~~l~~VG~~ag~vg~~lsn~L~~~rk~~~~~~e~~~~~ppv~~ta~~  160 (180)
T PF11891_consen   81 KFLGSLPNNAFQKGYPGRSFSLAQRIGAFVYKGAKLAAVGFIAGLVGTGLSNALIAARKKVDPSFEPSVPVPPVLKTALG  160 (180)
T ss_pred             HHHHhChHHHhccCCCCCcccHHHHHHHHHHcchHhhhhHHHHHHHHHHHHHHHHHHHHhcCccccCCCCCCCHHHHHHH
Confidence                3999999999999999999999999999999999999999999999999998  444    455679999999999


Q ss_pred             HHHHHhhhhhhHHHHHHhHH
Q 037984          122 YGAFLGLCANMRYQLLCGFD  141 (201)
Q Consensus       122 ~g~fmGvSsNlRYQ~l~Gie  141 (201)
                      ||+|||+|||+|||+|||+|
T Consensus       161 ~g~fmGvSsNlRYQil~GiE  180 (180)
T PF11891_consen  161 WGAFMGVSSNLRYQILNGIE  180 (180)
T ss_pred             HHHHHhhhHhHHHHHHcCCC
Confidence            99999999999999999987

This domain is found in eukaryotes. This domain is typically between 168 to 186 amino acids in length. This domain has a conserved RYQ sequence motif.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00