Citrus Sinensis ID: 038006

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------81
MLKIPISIGAGQKYQEKIEQRAEKEEKRVIKERMRREEDELGRMLNEITQNQSLSFAHHQHQHQHQHQHHNLVGGSPFSRVSLQSTTEHSSPSSSCFSNTGFCCFSEDDASPFSKPNNVLYNDSVENANKYKTRGGAATDCFNDMLWDAKSTDSCFHRGNVNDALDYETGLCENLYRMNIGGVGEEHLDHSAKLKRLDIVDPLGVRFGFTSDASLGGSVGVPYNVEKYSVFDGLNNVVSDYQGLSSSHTAVSKSFDDERKSLLTAFGGQYGEGDLKESNFGLCLNHSNDFRFGPSYSSLRHQYLQQRMEQGRSWSNAGTWLQNPSRISRSYVNDAFVGAQQLGLDSNRDIGVMNHLFSSQLVQTESDLDLDTLLYNHSMLKGRTNAMTNNRVSESFMPVNGAGAIEGFGCEDSFIIQGRSINQAASKGRDSLKGYKQNNLNEIVTRNQPVKICKHDGCAYDGVICDNGQSLMDIRCPLHLLSSSSSLADVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLNVCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHVVEKCLKHFGESRSQIVHELLSVPHFEQLLQDPFANYVIQCALSVTKGPLHASLIEAARRHTNLRTSPYCKRIFSRNISKK
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHcccccHHHHHHHHHHHcccHHHHHHHHHHHcccHHHHccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHcccHHHHHHHHHHHHccccccccccHHHHHHHHHccc
cccccEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccccccEEEccccccccccccccccccccEcccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccHHcccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccHHHHcccccccccccccccccHcccccHccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccHHHccccccccHHccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHcccccHHHHHHHHHccccccccHcccccccEEEHHcccccHHHcHHHHHHcccEEEEEHcccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHccccHHHHHHHHHHHHHcHHHHcccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHHcHHHHcccHHHHHHHHHHHHHccHHHHHHHHHHHcccHHHHHcccccHHHHHHHHHHHccHHHHHHHHHHHcccccccccccHHHHHHHHHHcc
mlkipisigagQKYQEKIEQRAEKEEKRVIKERMRREEDELGRMLNEITQnqslsfahhqhqhqhqhqhhnlvggspfsrvslqsttehsspssscfsntgfccfseddaspfskpnnvlyndsvenankyktrggaatdcfndmlwdakstdscfhrgnvndalDYETGLCENLyrmniggvgeehldhsaklkrldivdplgvrfgftsdaslggsvgvpynvekysvfdglnnvvsdyqglssshtavskSFDDERKSLLTAFggqygegdlkesnfglclnhsndfrfgpsyssLRHQYLQQRMEQgrswsnagtwlqnpsrisrsyvndafvgaqqlgldsnrdigVMNHLFSSqlvqtesdldldTLLYNHSMlkgrtnamtnnrvsesfmpvngagaiegfgcedsfiiQGRSINQaaskgrdslkgykqnnlneivtrnqpvkickhdgcaydgvicdngqslmdircplhllssssslaDVRGYIYSMAKDQNGCRFLQRVfdegtfldlQIIFDEVIDHIVELMMEQFGNYLVQKLLNVCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVLQRCLQClsnednevYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHRDKLITEISKngrhlaqdpfgNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHVVEKCLKHFGESRSQIVHELLsvphfeqllqdpfaNYVIQCALSVTKGPLHASLIEAARRHtnlrtspyckrifsrniskk
mlkipisigagqkyqekIEQRAEKEEKRVIKERMRREEDELGRMLNEITQNQSLSFAHHQHQHQHQHQHHNLVGGSPFSRVSLQSTTEHSSPSSSCFSNTGFCCFSEDDASPFSKPNNVLYNDSVENANKYKTRGGAATDCFNDMLWDAKSTDSCFHRGNVNDALDYETGLCENLYRMNIGGVGEEHLDHSAKLKRLDIVDPLGVRFGFTsdaslggsvGVPYNVEKYSVFDGLNNVVSDYQGLSSSHTAVSKSFDDERKSLLTAFGGQYGEGDLKESNFGLCLNHSNDFRFGPSYSSLRHQYLQQRMEQGRSWSNAGTWLQNPSRISRSYVNDAFVGAQQLGLDSNRDIGVMNHLFSSQLVQTESDLDLDTLLYNHSMLKGRTNAMTNNRVSESFMPVNGAGAIEGFGCEDSFIIQGRSINQAASKGRDSLKGYKQNNlneivtrnqpvkICKHDGCAYDGVICDNGQSLMDIRCPLHLLSSSSSLADVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLNVCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHVVEKCLKHFGESRSQIVHELLSVPHFEQLLQDPFANYVIQCALSVTKGPLHASLIEAArrhtnlrtspyckrifsrniskk
MLKIPISIGAGQKYQEKIEQRAEKEEKRVIKERMRREEDELGRMLNEITQNQSLSFAhhqhqhqhqhqhhNLVGGSPFSRVslqsttehsspssscfsntGFCCFSEDDASPFSKPNNVLYNDSVENANKYKTRGGAATDCFNDMLWDAKSTDSCFHRGNVNDALDYETGLCENLYRMNIGGVGEEHLDHSAKLKRLDIVDPLGVRFGFTSDASLGGSVGVPYNVEKYSVFDGLNNVVSDYQGLSSSHTAVSKSFDDERKSLLTAFGGQYGEGDLKESNFGLCLNHSNDFRFGPSYSSLRHQYLQQRMEQGRSWSNAGTWLQNPSRISRSYVNDAFVGAQQLGLDSNRDIGVMNHLFSSQLVQTESDLDLDTLLYNHSMLKGRTNAMTNNRVSESFMPVNGAGAIEGFGCEDSFIIQGRSINQAASKGRDSLKGYKQNNLNEIVTRNQPVKICKHDGCAYDGVICDNGQSLMDIRCPLHllssssslADVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLNVCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHVVEKCLKHFGESRSQIVHELLSVPHFEQLLQDPFANYVIQCALSVTKGPLHASLIEAARRHTNLRTSPYCKRIFSRNISKK
************************************************************************************************FSNTGFCCFS************VLYNDSVENANKYKTRGGAATDCFNDMLWDAKSTDSCFHRGNVNDALDYETGLCENLYRMNIGGVGEEHLDHSAKLKRLDIVDPLGVRFGFTSDASLGGSVGVPYNVEKYSVFDGLNNVVSDYQGL*****************LLTAFGGQYGEGDLKESNFGLCLNHSNDFRFGPSYSSLRHQYLQ*******SWSNAGTWLQNPSRISRSYVNDAFVGAQQLGLDSNRDIGVMNHLFSSQLVQTESDLDLDTLLYNHSMLKGRTNAM****VSESFMPVNGAGAIEGFGCEDSFIIQGRSI*************YKQNNLNEIVTRNQPVKICKHDGCAYDGVICDNGQSLMDIRCPLHLLSSSSSLADVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLNVCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHVVEKCLKHFGESRSQIVHELLSVPHFEQLLQDPFANYVIQCALSVTKGPLHASLIEAARRHTNLRTSPYCKRIF*******
***IPIS*G*******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************SSLADVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLNVCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHVVEKCLKHFGESRSQIVHELLSVPHFEQLLQDPFANYVIQCALSVTKGPLHASLIEAARRHTNLRTSPYCKRIFSRNISKK
MLKIPISIGAGQKYQEKIEQRAEKEEKRVIKERMRREEDELGRMLNEITQNQSLS****************LVGGSPFSRV****************SNTGFCCFSEDDASPFSKPNNVLYNDSVENANKYKTRGGAATDCFNDMLWDAKSTDSCFHRGNVNDALDYETGLCENLYRMNIGGVGEEHLDHSAKLKRLDIVDPLGVRFGFTSDASLGGSVGVPYNVEKYSVFDGLNNVVSDYQGLSSSHTAVSKSFDDERKSLLTAFGGQYGEGDLKESNFGLCLNHSNDFRFGPSYSSLRHQYLQQRMEQGRSWSNAGTWLQNPSRISRSYVNDAFVGAQQLGLDSNRDIGVMNHLFSSQLVQTESDLDLDTLLYNHSMLKGRTNAMTNNRVSESFMPVNGAGAIEGFGCEDSFIIQGRSINQAASKGRDSLKGYKQNNLNEIVTRNQPVKICKHDGCAYDGVICDNGQSLMDIRCPLHLLSSSSSLADVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLNVCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHVVEKCLKHFGESRSQIVHELLSVPHFEQLLQDPFANYVIQCALSVTKGPLHASLIEAARRHTNLRTSPYCKRIFSRNISKK
*LKIPISIGAGQKYQEKIEQRAEKEEKRVIKERMRREEDELGRMLNEITQNQSLSFA********************************************FCCF*EDDASPFSKPNNVLYNDSVENANKYKTRGGAATDCFNDMLWDAKSTDSCFHRGNVNDALDYETGLCENLYRMNIGGVGEEHLDHSAKLKRLDIVDPLGVRFGFTSDASLGGSVGVPYNVEKYSVFDGLNNVVSDYQGLSSSHTAVSKSFDDERKSLLTAFGGQYGEGDLKESNFGLCLNHSNDFRFGPSYSSLRHQYLQQRMEQGRSWSNAGTWLQNPSRISRSYVNDAFVGAQQLGLDSNRDIGVMNHLFSSQLVQTESDLDLDTLLYNHSMLKGRTNAMTNNRVSESFMPVNGAGAIEGFGCEDSFIIQGRSINQAASKGRDSLKGYKQNNLNEIVTRNQPVKICKHDGCAYDGVICDNGQSLMDIRCPLHLLSSSSSLADVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLNVCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHVVEKCLKHFGESRSQIVHELLSVPHFEQLLQDPFANYVIQCALSVTKGPLHASLIEAARRHTNLRTSPYCKRIFSRNISKK
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MLKIPISIGAGQKYQEKIExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQSLSFAHHQHQHQHQHQHHNLVGGSPFSRVSLQSTTEHSSPSSSCFSNTGFCCFSEDDASPFSKPNNVLYNDSVENANKYKTRGGAATDCFNDMLWDAKSTDSCFHRGNVNDALDYETGLCENLYRMNIGGVGEEHLDHSAKLKRLDIVDPLGVRFGFTSDASLGGSVGVPYNVEKYSVFDGLNNVVSDYQGLSSSHTAVSKSFDDERKSLLTAFGGQYGEGDLKESNFGLCLNHSNDFRFGPSYSSLRHQYLQQRMEQGRSWSNAGTWLQNPSRISRSYVNDAFVGAQQLGLDSNRDIGVMNHLFSSQLVQTESDLDLDTLLYNHSMLKGRTNAMTNNRVSESFMPVNGAGAIEGFGCEDSFIIQGRSINQAASKGRDSLKGYKQNNLNEIVTRNQPVKICKHDGCAYDGVICDNGQSLMDIRCPLHLLSSSSSLADVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLNVCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHVVEKCLKHFGESRSQIVHELLSVPHFEQLLQDPFANYVIQCALSVTKGPLHASLIEAARRHTNLRTSPYCKRIFSRNISKK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query808 2.2.26 [Sep-21-2011]
Q9C9R6650 Putative pumilio homolog yes no 0.449 0.558 0.598 1e-139
Q9LM20515 Putative pumilio homolog no no 0.399 0.627 0.658 1e-130
Q9LDW3556 Pumilio homolog 11 OS=Ara no no 0.396 0.575 0.601 1e-114
Q1PFN9564 Pumilio homolog 9 OS=Arab no no 0.394 0.565 0.594 1e-113
Q9LP21528 Putative pumilio homolog no no 0.491 0.751 0.469 1e-101
Q9LVC3596 Pumilio homolog 12 OS=Ara no no 0.398 0.540 0.484 2e-87
Q92359681 Pumilio domain-containing yes no 0.376 0.446 0.386 2e-58
P25339888 Pumilio homology domain f yes no 0.376 0.342 0.422 3e-56
Q09829780 Pumilio domain-containing no no 0.341 0.353 0.379 1e-52
Q80U581066 Pumilio homolog 2 OS=Mus yes no 0.386 0.292 0.316 6e-45
>sp|Q9C9R6|PUM7_ARATH Putative pumilio homolog 7, chloroplastic OS=Arabidopsis thaliana GN=APUM7 PE=3 SV=2 Back     alignment and function desciption
 Score =  494 bits (1273), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 241/403 (59%), Positives = 299/403 (74%), Gaps = 40/403 (9%)

Query: 406 EGFGCEDSFIIQGRSINQAASKGRDSLKGYKQNNLNEIVTRNQPVKICKHDGCAYDGVIC 465
           E F  ++SF + G+SI+   S  R        NN N       P +IC            
Sbjct: 288 EPFSSDESFFMNGKSIDHQRSNTR----ALMSNNGN-------PTEICH----------- 325

Query: 466 DNGQSLMDIRCPLHLLSSSSSLADVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDE 525
                            S  ++ D++GY+Y MAKDQ+GCRFLQR+FDEGT +D  IIF+E
Sbjct: 326 ----------------PSLPNMCDIQGYVYLMAKDQHGCRFLQRIFDEGTSVDAMIIFNE 369

Query: 526 VIDHIVELMMEQFGNYLVQKLLNVCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKL 585
           VI H+VELMM+ FGNYL+QKLL+VCTEEQ T+I+L+ TEEPGQL+R+ LN YGTRVVQ+L
Sbjct: 370 VIAHVVELMMDPFGNYLMQKLLDVCTEEQRTQIVLVATEEPGQLIRISLNAYGTRVVQRL 429

Query: 586 IETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCV 645
           +ET+++ +Q+SLVK AL+PGFLDLIKDLNGNHV+QRCLQCLS EDN+    FDAA KFC 
Sbjct: 430 VETIRSGKQISLVKLALRPGFLDLIKDLNGNHVIQRCLQCLSTEDNK--FIFDAATKFCT 487

Query: 646 DIATHQHGCCVLQRCIAHSIGRHRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVS 705
           +IATH+HGCCVLQ+CIA+S+ + R+KLI EIS+N   LAQDPFGNY VQ++IEL+IPS  
Sbjct: 488 EIATHRHGCCVLQKCIAYSMRQQREKLIAEISRNSLLLAQDPFGNYAVQFVIELRIPSAV 547

Query: 706 ANLLSQFKGHYVHLSTQKFSSHVVEKCLKHFGESRSQIVHELLSVPHFEQLLQDPFANYV 765
           A +L+Q KGHYV LS QKFSSH+VE+CL H  ESR QIV EL+SVPHF+QLLQDP+AN+V
Sbjct: 548 AMMLAQLKGHYVQLSMQKFSSHMVERCLMHCPESRPQIVRELVSVPHFDQLLQDPYANFV 607

Query: 766 IQCALSVTKGPLHASLIEAARRHTNLRTSPYCKRIFSRNISKK 808
           IQ AL+ TKGPLHASL+E  R H+ LR +PYCKRIFSRN+ KK
Sbjct: 608 IQAALAATKGPLHASLVEVIRPHSILRNNPYCKRIFSRNLLKK 650
Sequence-specific RNA-binding protein that regulates translation and mRNA stability by binding the 3'-UTR of target mRNAs.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LM20|PUM8_ARATH Putative pumilio homolog 8, chloroplastic OS=Arabidopsis thaliana GN=APUM8 PE=3 SV=2 Back     alignment and function description
>sp|Q9LDW3|PUM11_ARATH Pumilio homolog 11 OS=Arabidopsis thaliana GN=APUM11 PE=3 SV=2 Back     alignment and function description
>sp|Q1PFN9|PUM9_ARATH Pumilio homolog 9 OS=Arabidopsis thaliana GN=APUM9 PE=2 SV=1 Back     alignment and function description
>sp|Q9LP21|PUM10_ARATH Putative pumilio homolog 10 OS=Arabidopsis thaliana GN=APUM10 PE=3 SV=2 Back     alignment and function description
>sp|Q9LVC3|PUM12_ARATH Pumilio homolog 12 OS=Arabidopsis thaliana GN=APUM12 PE=2 SV=2 Back     alignment and function description
>sp|Q92359|YDHE_SCHPO Pumilio domain-containing protein C6G9.14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC6G9.14 PE=4 SV=1 Back     alignment and function description
>sp|P25339|PUF4_YEAST Pumilio homology domain family member 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PUF4 PE=1 SV=2 Back     alignment and function description
>sp|Q09829|YAD3_SCHPO Pumilio domain-containing protein C4G8.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC4G8.03c PE=4 SV=1 Back     alignment and function description
>sp|Q80U58|PUM2_MOUSE Pumilio homolog 2 OS=Mus musculus GN=Pum2 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query808
255545698 1204 conserved hypothetical protein [Ricinus 0.785 0.527 0.510 1e-171
225459320724 PREDICTED: uncharacterized protein LOC10 0.763 0.852 0.514 1e-157
225448285810 PREDICTED: uncharacterized protein LOC10 0.778 0.776 0.484 1e-151
22330712650 pumilio 7 [Arabidopsis thaliana] gi|3134 0.449 0.558 0.598 1e-137
297839687653 hypothetical protein ARALYDRAFT_476984 [ 0.449 0.555 0.595 1e-136
224063219327 predicted protein [Populus trichocarpa] 0.400 0.990 0.720 1e-135
356528052779 PREDICTED: uncharacterized protein LOC10 0.763 0.792 0.460 1e-133
297845242525 hypothetical protein ARALYDRAFT_335467 [ 0.399 0.615 0.655 1e-128
9454526514 Contains similarity to RNA binding prote 0.399 0.628 0.658 1e-128
15219849515 protein pumilio 8 [Arabidopsis thaliana] 0.399 0.627 0.658 1e-128
>gi|255545698|ref|XP_002513909.1| conserved hypothetical protein [Ricinus communis] gi|223546995|gb|EEF48492.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  608 bits (1567), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 343/672 (51%), Positives = 441/672 (65%), Gaps = 37/672 (5%)

Query: 142  FNDMLWDAKSTDSCFHRGNVNDALDYETGLCENLYRMNIGGVGEEHLDHSAKLKRLDIVD 201
             N   +D+KS D+ +    +N  L  E GL ++   ++I    EEH   S ++K      
Sbjct: 565  MNGFCFDSKSPDASY---KMNARLVDEMGLSQSFCGLSIK---EEHNSGSTEMKEFG--- 615

Query: 202  PLGVRFGFTSDASLGGSVGVPYNVEKYS-VFDGLNNVVS-DYQGLSSSHTAVSKSFDDER 259
                 FG  +D SL G +G  YNV+K+   + G NN  + D +G  SS   V   +DD  
Sbjct: 616  -----FGGFNDLSLDGHLG--YNVKKHGGSYGGSNNKGAFDIEGFQSSPHGV---YDDGN 665

Query: 260  KSLLTAFGGQYGEGDLKESNFGLCLNH---SNDFRFGPSYSSLRHQYLQQRMEQGRSWSN 316
             +    F G + +         L  ++   +ND   G  + + +  YL   +EQ  +WS+
Sbjct: 666  HT----FSGGFEKDAFVPMGSPLVAHNQTRTNDLYSGSCWYNNQSDYL---LEQRGNWSD 718

Query: 317  AGTWLQNPSRISRSYVNDAFVGAQQLGLDSNRDIGVMNHLFSSQLVQTESDLDLDTLLYN 376
             G   QN S  + + +ND  V  Q   LDSN   GV++ + + Q +  + D+++   +Y 
Sbjct: 719  RGIQSQN-SYFTGTCLNDPSVFPQHYKLDSNGGRGVIDSMGAFQSLHHKLDMNVSDPVYR 777

Query: 377  HSMLKGRTNAMTNNRVSESFMPVNGAGAIEGFGCEDSFIIQGRSINQAASKGRDSLKGYK 436
              MLK    A+ NN    S M + G  A+E F CEDS+IIQG+ +N  ++K  + L    
Sbjct: 778  SLMLKEMMRAIKNNE--HSLMSMKGTEAMEAFSCEDSYIIQGKVLNHVSNKECEPLSRDN 835

Query: 437  QNNLNEIVTRNQPVKICKHDGCAYDGVICDNGQSLMDIRCPLHLLSSSSSLADVRGYIYS 496
             N+LNEI  +N   K  + D C  +G   +N   +     PL  + S +SL++V+G IY 
Sbjct: 836  MNSLNEIPFQNFRGKSIRLDNCILNGESWENDPRISSY-SPLPEVPSINSLSEVQGKIYL 894

Query: 497  MAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLNVCTEEQMT 556
            MA+DQNGCR+LQR+FDEGT  D+QIIF+E+IDH+VELM++ FGNY++QK L+VC EEQ  
Sbjct: 895  MAQDQNGCRWLQRIFDEGTSQDIQIIFNEIIDHVVELMLKPFGNYVIQKFLDVCNEEQRL 954

Query: 557  RILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGN 616
            +I+ MVTEEPGQL+R+CLNTYGTR VQKLIETLKTRQQ+S V  AL+PGFLDL+KD NGN
Sbjct: 955  QIVFMVTEEPGQLLRICLNTYGTRAVQKLIETLKTRQQISFVVMALRPGFLDLVKDQNGN 1014

Query: 617  HVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHRDKLITEI 676
            HV+QRCLQCL N+DN+    FDAAAKF V IATH+HGCCV+QRCI HS G+HR+KLITEI
Sbjct: 1015 HVIQRCLQCLHNDDNK--FIFDAAAKFSVQIATHRHGCCVMQRCITHSTGKHREKLITEI 1072

Query: 677  SKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHVVEKCLKHF 736
            SKN   LAQDPFGNYVVQYI+ELK PS + NLLSQF+ HYVHLS QKFSSHVVEKCLKH 
Sbjct: 1073 SKNALLLAQDPFGNYVVQYIVELKNPSAAVNLLSQFRRHYVHLSMQKFSSHVVEKCLKHL 1132

Query: 737  GESRSQIVHELLSVPHFEQLLQDPFANYVIQCALSVTKGPLHASLIEAARRHTNLRTSPY 796
             ESR QIVHEL+SV  FEQLLQDPFANYVIQ AL+VTKGPL ASL+ A R H  LRT+PY
Sbjct: 1133 EESREQIVHELISVSRFEQLLQDPFANYVIQSALAVTKGPLRASLVAAVRPHVILRTNPY 1192

Query: 797  CKRIFSRNISKK 808
             KRIFSRN+ KK
Sbjct: 1193 SKRIFSRNLLKK 1204

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225459320|ref|XP_002284170.1| PREDICTED: uncharacterized protein LOC100257510 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225448285|ref|XP_002271130.1| PREDICTED: uncharacterized protein LOC100266352 [Vitis vinifera] Back     alignment and taxonomy information
>gi|22330712|ref|NP_177940.2| pumilio 7 [Arabidopsis thaliana] gi|313471413|sp|Q9C9R6.2|PUM7_ARATH RecName: Full=Putative pumilio homolog 7, chloroplastic; Short=APUM-7; Short=AtPUM7; Flags: Precursor gi|332197954|gb|AEE36075.1| pumilio 7 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297839687|ref|XP_002887725.1| hypothetical protein ARALYDRAFT_476984 [Arabidopsis lyrata subsp. lyrata] gi|297333566|gb|EFH63984.1| hypothetical protein ARALYDRAFT_476984 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|224063219|ref|XP_002301047.1| predicted protein [Populus trichocarpa] gi|222842773|gb|EEE80320.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356528052|ref|XP_003532619.1| PREDICTED: uncharacterized protein LOC100799294 [Glycine max] Back     alignment and taxonomy information
>gi|297845242|ref|XP_002890502.1| hypothetical protein ARALYDRAFT_335467 [Arabidopsis lyrata subsp. lyrata] gi|297336344|gb|EFH66761.1| hypothetical protein ARALYDRAFT_335467 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|9454526|gb|AAF87849.1|AC073942_3 Contains similarity to RNA binding protein PufA from Dictyostelium discoideum gi|5106561 and contains multiple Pumilio-family RNA binding PF|00806 domains [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15219849|ref|NP_173643.1| protein pumilio 8 [Arabidopsis thaliana] gi|313471411|sp|Q9LM20.2|PUM8_ARATH RecName: Full=Putative pumilio homolog 8, chloroplastic; Short=APUM-8; Short=AtPUM8; Flags: Precursor gi|332192094|gb|AEE30215.1| protein pumilio 8 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query808
TAIR|locus:2194699650 PUM7 "pumilio 7" [Arabidopsis 0.393 0.489 0.703 1.8e-131
TAIR|locus:2015036515 PUM8 "pumilio 8" [Arabidopsis 0.393 0.617 0.668 2.8e-122
TAIR|locus:2138258556 PUM11 "pumilio 11" [Arabidopsi 0.391 0.568 0.606 2.7e-107
TAIR|locus:2011349564 PUM9 "pumilio 9" [Arabidopsis 0.391 0.560 0.596 1.1e-103
TAIR|locus:2011360528 PUM10 "pumilio 10" [Arabidopsi 0.493 0.755 0.461 1.6e-93
TAIR|locus:2167111596 PUM12 "pumilio 12" [Arabidopsi 0.394 0.535 0.489 1.3e-82
DICTYBASE|DDB_G02899871036 DDB_G0289987 "Pumilio homology 0.384 0.300 0.453 3.3e-76
ASPGD|ASPL0000057098650 AN10071 [Emericella nidulans ( 0.381 0.473 0.434 2e-65
POMBASE|SPAC6G9.14681 SPAC6G9.14 "RNA-binding protei 0.376 0.446 0.389 8.6e-56
POMBASE|SPAC4G8.03c780 SPAC4G8.03c "RNA-binding prote 0.341 0.353 0.386 7.1e-53
TAIR|locus:2194699 PUM7 "pumilio 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1228 (437.3 bits), Expect = 1.8e-131, Sum P(2) = 1.8e-131
 Identities = 225/320 (70%), Positives = 275/320 (85%)

Query:   489 DVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLN 548
             D++GY+Y MAKDQ+GCRFLQR+FDEGT +D  IIF+EVI H+VELMM+ FGNYL+QKLL+
Sbjct:   333 DIQGYVYLMAKDQHGCRFLQRIFDEGTSVDAMIIFNEVIAHVVELMMDPFGNYLMQKLLD 392

Query:   549 VCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLD 608
             VCTEEQ T+I+L+ TEEPGQL+R+ LN YGTRVVQ+L+ET+++ +Q+SLVK AL+PGFLD
Sbjct:   393 VCTEEQRTQIVLVATEEPGQLIRISLNAYGTRVVQRLVETIRSGKQISLVKLALRPGFLD 452

Query:   609 LIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRH 668
             LIKDLNGNHV+QRCLQCLS EDN+    FDAA KFC +IATH+HGCCVLQ+CIA+S+ + 
Sbjct:   453 LIKDLNGNHVIQRCLQCLSTEDNK--FIFDAATKFCTEIATHRHGCCVLQKCIAYSMRQQ 510

Query:   669 RDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSSHV 728
             R+KLI EIS+N   LAQDPFGNY VQ++IEL+IPS  A +L+Q KGHYV LS QKFSSH+
Sbjct:   511 REKLIAEISRNSLLLAQDPFGNYAVQFVIELRIPSAVAMMLAQLKGHYVQLSMQKFSSHM 570

Query:   729 VEKCLKHFGESRSQIVHELLSVPHFEQLLQDPFANYVIQCALSVTKGPLHASLIEAARRH 788
             VE+CL H  ESR QIV EL+SVPHF+QLLQDP+AN+VIQ AL+ TKGPLHASL+E  R H
Sbjct:   571 VERCLMHCPESRPQIVRELVSVPHFDQLLQDPYANFVIQAALAATKGPLHASLVEVIRPH 630

Query:   789 TNLRTSPYCKRIFSRNISKK 808
             + LR +PYCKRIFSRN+ KK
Sbjct:   631 SILRNNPYCKRIFSRNLLKK 650
GO:0003723 "RNA binding" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM
GO:0003729 "mRNA binding" evidence=IPI
GO:0005737 "cytoplasm" evidence=IDA
TAIR|locus:2015036 PUM8 "pumilio 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2138258 PUM11 "pumilio 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2011349 PUM9 "pumilio 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2011360 PUM10 "pumilio 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2167111 PUM12 "pumilio 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0289987 DDB_G0289987 "Pumilio homology domain family member 4" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ASPGD|ASPL0000057098 AN10071 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
POMBASE|SPAC6G9.14 SPAC6G9.14 "RNA-binding protein (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
POMBASE|SPAC4G8.03c SPAC4G8.03c "RNA-binding protein (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00015242001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (724 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query808
cd07920322 cd07920, Pumilio, Pumilio-family RNA binding domai 1e-123
COG5099777 COG5099, COG5099, RNA-binding protein of the Puf f 4e-57
cd07920322 cd07920, Pumilio, Pumilio-family RNA binding domai 1e-38
COG5099777 COG5099, COG5099, RNA-binding protein of the Puf f 2e-08
smart0002536 smart00025, Pumilio, Pumilio-like repeats 4e-06
pfam0080634 pfam00806, PUF, Pumilio-family RNA binding repeat 2e-05
smart0002536 smart00025, Pumilio, Pumilio-like repeats 0.001
smart0002536 smart00025, Pumilio, Pumilio-like repeats 0.001
smart0002536 smart00025, Pumilio, Pumilio-like repeats 0.001
smart0002536 smart00025, Pumilio, Pumilio-like repeats 0.002
pfam0080634 pfam00806, PUF, Pumilio-family RNA binding repeat 0.002
pfam0080634 pfam00806, PUF, Pumilio-family RNA binding repeat 0.004
>gnl|CDD|153420 cd07920, Pumilio, Pumilio-family RNA binding domain Back     alignment and domain information 
 Score =  373 bits (960), Expect = e-123
 Identities = 139/328 (42%), Positives = 207/328 (63%), Gaps = 15/328 (4%)

Query: 484 SSSLADVR-GYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYL 542
           S +L D++ G+I   AKDQ+G RFLQ+  +E T  + ++IFDE++ H+VELM++ FGNY+
Sbjct: 1   SLTLQDIKAGHIVEFAKDQHGSRFLQQKLEEATPEEKELIFDEILPHVVELMVDPFGNYV 60

Query: 543 VQKLLNVCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAAL 602
           +QKL    TEEQ  ++L  +    G +VR+ L+ YG RV+QKL+E++   Q   LVK  L
Sbjct: 61  IQKLFEHGTEEQRLQLLEKIL---GHVVRLSLDMYGCRVIQKLLESISEEQISLLVKE-L 116

Query: 603 KPGFLDLIKDLNGNHVLQRCLQCLSNEDNEVYLF-FDAAAKFCVDIATHQHGCCVLQRCI 661
           +   ++L+KD NGNHV+Q+C++    ED +   F  DA    CV ++TH +GC V+QRC+
Sbjct: 117 RGHVVELVKDQNGNHVIQKCIEKFPPEDLQ---FIIDAFKGNCVALSTHPYGCRVIQRCL 173

Query: 662 AHSIGRHRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLST 721
            H     R+ L+ EI ++   L QD FGNYVVQ+++EL  P  ++ ++ +  G+ V LS 
Sbjct: 174 EHCSEEQREPLLEEILEHALELVQDQFGNYVVQHVLELGDPDDTSRIIEKLLGNIVQLSC 233

Query: 722 QKFSSHVVEKCLKHFGES-RSQIVHELLS----VPHFEQLLQDPFANYVIQCALSVTKGP 776
            KF+S+VVEKCLKH  +  R  I+ E+L+        + L++D + NYVIQ AL V K  
Sbjct: 234 HKFASNVVEKCLKHASKEERELIIDEILASGNETSALDTLMKDQYGNYVIQTALDVAKEE 293

Query: 777 LHASLIEAARRHT-NLRTSPYCKRIFSR 803
               L+EA R H  +LR SPY K I ++
Sbjct: 294 QRELLVEAIRPHLPSLRKSPYGKHILAK 321

Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canonical) repeats. Length = 322
>gnl|CDD|227430 COG5099, COG5099, RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|153420 cd07920, Pumilio, Pumilio-family RNA binding domain Back     alignment and domain information
>gnl|CDD|227430 COG5099, COG5099, RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|214475 smart00025, Pumilio, Pumilio-like repeats Back     alignment and domain information
>gnl|CDD|201452 pfam00806, PUF, Pumilio-family RNA binding repeat Back     alignment and domain information
>gnl|CDD|214475 smart00025, Pumilio, Pumilio-like repeats Back     alignment and domain information
>gnl|CDD|214475 smart00025, Pumilio, Pumilio-like repeats Back     alignment and domain information
>gnl|CDD|214475 smart00025, Pumilio, Pumilio-like repeats Back     alignment and domain information
>gnl|CDD|214475 smart00025, Pumilio, Pumilio-like repeats Back     alignment and domain information
>gnl|CDD|201452 pfam00806, PUF, Pumilio-family RNA binding repeat Back     alignment and domain information
>gnl|CDD|201452 pfam00806, PUF, Pumilio-family RNA binding repeat Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 808
KOG1488503 consensus Translational repressor Pumilio/PUF3 and 100.0
cd07920322 Pumilio Pumilio-family RNA binding domain. Puf rep 100.0
KOG1488503 consensus Translational repressor Pumilio/PUF3 and 100.0
KOG2049536 consensus Translational repressor MPT5/PUF4 and re 100.0
COG5099777 RNA-binding protein of the Puf family, translation 100.0
cd07920322 Pumilio Pumilio-family RNA binding domain. Puf rep 100.0
KOG2049536 consensus Translational repressor MPT5/PUF4 and re 100.0
COG5099777 RNA-binding protein of the Puf family, translation 100.0
KOG2050 652 consensus Puf family RNA-binding protein [Translat 99.93
KOG2188650 consensus Predicted RNA-binding protein, contains 99.92
KOG2050 652 consensus Puf family RNA-binding protein [Translat 99.81
KOG2188650 consensus Predicted RNA-binding protein, contains 99.74
KOG4574 1007 consensus RNA-binding protein (contains RRM and Pu 99.65
KOG45741007 consensus RNA-binding protein (contains RRM and Pu 99.18
PF0080635 PUF: Pumilio-family RNA binding repeat; InterPro: 98.0
PF0080635 PUF: Pumilio-family RNA binding repeat; InterPro: 97.66
smart0002536 Pumilio Pumilio-like repeats. Pumilio-like repeats 97.47
smart0002536 Pumilio Pumilio-like repeats. Pumilio-like repeats 97.27
PF08144148 CPL: CPL (NUC119) domain; InterPro: IPR012959 This 86.64
PF08144148 CPL: CPL (NUC119) domain; InterPro: IPR012959 This 85.21
>KOG1488 consensus Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=2.1e-56  Score=500.72  Aligned_cols=313  Identities=31%  Similarity=0.554  Sum_probs=297.7

Q ss_pred             hHHHHhhhHHHHhhcCCccHHHHhhhccCCH-HHHHHHHHHHhcchhhhccccchhHHHHHHHhhCCHHHHHHHHHHHhh
Q 038006          486 SLADVRGYIYSMAKDQNGCRFLQRVFDEGTF-LDLQIIFDEVIDHIVELMMEQFGNYLVQKLLNVCTEEQMTRILLMVTE  564 (808)
Q Consensus       486 iLeei~GkI~eLA~Dq~GSRVLQklLE~~t~-Eq~~~I~~eL~~~~~~L~~DqfGNHVVQKLLe~~seeqr~~Ii~iL~~  564 (808)
                      .+..+.|.+++++.|++|||+||+-++.+++ +++..||+++.+.+.+||+|.||||||||++++++++++..+   ...
T Consensus       173 ~~~~~~~~~v~f~~Dq~GsrfiQqkl~~~~~~~ek~~if~ei~~~~~~L~~dvFGNyvIQkffE~gt~~q~~~l---~~~  249 (503)
T KOG1488|consen  173 ELVDIPGHLVEFAKDQHGSRFIQQKLETASDNEEKQAVFDEILPPALELMTDVFGNYVIQKFFEHGTEDQRNLL---HSQ  249 (503)
T ss_pred             cccccCCCceeecCCcccchHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhccCCHHHHHHH---HHH
Confidence            3457889999999999999999999999988 999999999999999999999999999999999999998776   455


Q ss_pred             ccchhhhhhcCcccchhHhHHHhhcCcHHHHHHHHHHhccCccccccccCCchHHHHHHhhccccchhHHHHHHHHHH--
Q 038006          565 EPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAK--  642 (808)
Q Consensus       565 l~g~iveLa~hkyGcrVVQKLLE~ls~~qqi~lLleeL~~~~~eLa~Dq~GNhVIQkILe~~s~~~~~~~~Iie~L~~--  642 (808)
                      +.+++..||.+.|||||+||+|+......+.+++ .+|..++..+++|++||||||+|+++.+.+.+.+  |++.+.+  
T Consensus       250 ~~g~v~~Lsld~ygCRVIQkale~id~~~~~~Li-~ELd~~vl~~v~DQngnHViQK~ie~~p~~~~~F--iv~~f~~~~  326 (503)
T KOG1488|consen  250 IKGHVLELSLDMYGCRVIQKALEKVDVSLQIQLI-DELDGHLLKCVKDQNGNHVIQKCIETLPPDAWQF--IVDFFSGDD  326 (503)
T ss_pred             HHhhhhhhhcccccchhHHHHHHhcCHHHHHHHH-HHHHhhHHHHHhhcccceehhhhhhccChHHHHH--HHHHhcCCC
Confidence            6899999999999999999999999887776655 6779999999999999999999999999999999  9999999  


Q ss_pred             HHHHHhcCccchhhHHHHHhhcchhhHHHHHHHHHHhHHhhhcCCCchHHHHHHHhhcCchhHHHHHHHHHHhhhhcccC
Q 038006          643 FCVDIATHQHGCCVLQRCIAHSIGRHRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQ  722 (808)
Q Consensus       643 ~lv~LS~~k~GS~VVQkcLe~as~e~r~~LIeeL~~~l~~La~DqyGNyVIQkLLe~~~~k~r~~Ii~~Lrg~lv~Ls~~  722 (808)
                      ++..+|+|+|||+|||++||+|.++++..++++|..++..|++|+|||||||++|+++.+..+..|++.|.++++.++.+
T Consensus       327 ~~~~ls~~~YGCRVIQr~lE~c~~~~~~~i~~ei~~~~~~L~~dQygNYVIQHVie~g~~~~~~~I~~~l~~~ll~~Sq~  406 (503)
T KOG1488|consen  327 NLLELSTHKYGCRVIQRILEHCSEDQKQPLMEEIIRNCDQLAQDQYGNYVIQHVIEHGSPYRDTIIIKCLLGNLLSMSQH  406 (503)
T ss_pred             ceeEeeccCcccHHHHHHhhcCChHhhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCChhhhhhHHHHHHhhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999988899999999999999999


Q ss_pred             cchHHHHHHHHhhh-hhhHHHHHHHHhCC-----chHHHHhcCCChhHHHHHHHhcCChhhHHHHHHHHhcc-cCccCCC
Q 038006          723 KFSSHVVEKCLKHF-GESRSQIVHELLSV-----PHFEQLLQDPFANYVIQCALSVTKGPLHASLIEAARRH-TNLRTSP  795 (808)
Q Consensus       723 KyGS~VLEKcL~~a-~k~Rk~II~eLl~~-----~~L~~La~DqyGNYVIQklL~~ad~~qre~Ll~eL~ph-~~Lr~sp  795 (808)
                      ||+|+||||||.++ ...|..+++|++..     +.|..|+.|+|||||||+|++.+.+.+++.|+..|++| ..|+.++
T Consensus       407 KfASnVVEk~~~~a~~~~r~~i~~Ei~~~~~~~~~~L~~mmkdQYgNYVVQkmi~~~~~~q~~~i~~rI~~h~~~Lrk~s  486 (503)
T KOG1488|consen  407 KFASNVVEKAFLFAPPLLRALIMNEIFPGYVEHPDALDIMMKDQYGNYVVQKMIDICGPEQRELIKSRVKPHASRLRKFS  486 (503)
T ss_pred             HHHHHHHHHHHhhCCHHHHHHHHHHhcCCccCCccHHHHHHHHhhhhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHccCc
Confidence            99999999999999 99999999999974     56999999999999999999999999999999999999 9999999


Q ss_pred             Ccchhhhhh
Q 038006          796 YCKRIFSRN  804 (808)
Q Consensus       796 ~GkrVls~~  804 (808)
                      |||||++++
T Consensus       487 yGKhIia~l  495 (503)
T KOG1488|consen  487 YGKHIIAKL  495 (503)
T ss_pred             cHHHHHHHH
Confidence            999999985

>cd07920 Pumilio Pumilio-family RNA binding domain Back     alignment and domain information
>KOG1488 consensus Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2049 consensus Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG5099 RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd07920 Pumilio Pumilio-family RNA binding domain Back     alignment and domain information
>KOG2049 consensus Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG5099 RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2050 consensus Puf family RNA-binding protein [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2188 consensus Predicted RNA-binding protein, contains Pumilio domains [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2050 consensus Puf family RNA-binding protein [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2188 consensus Predicted RNA-binding protein, contains Pumilio domains [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only] Back     alignment and domain information
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only] Back     alignment and domain information
>PF00806 PUF: Pumilio-family RNA binding repeat; InterPro: IPR001313 The drosophila pumilio gene codes for an unusual protein that binds through the Puf domain that usually occurs as a tandem repeat of eight domains Back     alignment and domain information
>PF00806 PUF: Pumilio-family RNA binding repeat; InterPro: IPR001313 The drosophila pumilio gene codes for an unusual protein that binds through the Puf domain that usually occurs as a tandem repeat of eight domains Back     alignment and domain information
>smart00025 Pumilio Pumilio-like repeats Back     alignment and domain information
>smart00025 Pumilio Pumilio-like repeats Back     alignment and domain information
>PF08144 CPL: CPL (NUC119) domain; InterPro: IPR012959 This C-terminal domain is found in Penguin-like proteins (CPL) and is associated with Pumilio like repeats [] Back     alignment and domain information
>PF08144 CPL: CPL (NUC119) domain; InterPro: IPR012959 This C-terminal domain is found in Penguin-like proteins (CPL) and is associated with Pumilio like repeats [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query808
4dzs_A357 Crystal Structure Of Yeast Puf4p Rna Binding Domain 1e-55
3bx2_A335 Puf4 Rna Binding Domain Bound To Ho Endonuclease Rn 3e-55
3bwt_A333 Crystal Structure Of The Rna Binding Domain Of Puf4 4e-55
3bx3_A335 Puf4 T650cC724R MUTANT BOUND TO COX17 RNA 3' UTR Re 7e-53
3gvo_A351 Structure And Rna Binding Of The Mouse Pumilio-2 Pu 1e-44
3q0q_A351 Crystal Structure Of The Pumilio-Homology Domain Fr 2e-43
1ib2_A349 Crystal Structure Of A Pumilio-Homology Domain Leng 6e-43
3bsb_A343 Crystal Structure Of Human Pumilio1 In Complex With 9e-43
2yjy_A350 A Specific And Modular Binding Code For Cytosine Re 8e-42
3h3d_X323 Drosophila Pumilio Rna Binding Domain (Puf Domain) 1e-38
3k49_A369 Puf3 Rna Binding Domain Bound To Cox17 Rna 3' Utr R 5e-32
3k49_A 369 Puf3 Rna Binding Domain Bound To Cox17 Rna 3' Utr R 2e-11
3qg9_A413 Crystal Structure Of Fbf-2GLD-1 Fbea A7u Mutant Com 1e-19
3k5q_A412 Crystal Structure Of Fbf-2FBE COMPLEX Length = 412 1e-19
3qgb_A413 Crystal Structure Of Fbf-2 R288y Mutant In Complex 1e-18
3v71_A382 Crystal Structure Of Puf-6 In Complex With 5be13 Rn 2e-04
>pdb|4DZS|A Chain A, Crystal Structure Of Yeast Puf4p Rna Binding Domain In Complex With Ho-4be Mutant Rna Length = 357 Back     alignment and structure 
Iteration: 1

 Score =  214 bits (546), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 136/322 (42%), Positives = 183/322 (56%), Gaps = 18/322 (5%)
Query: 492 GYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLNVCT 551
           G I+S+ KDQ+GCRFLQ+  D         IF+E  D+ VELM + FGNYL+QKLL   T
Sbjct: 35  GSIHSLCKDQHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLIQKLLEEVT 94
Query: 552 EEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIK 611
            EQ  RI+L     P   V + LN +GTR +QKLIE +KT ++  +V  +L+P  + L K
Sbjct: 95  TEQ--RIVLTKISSP-HFVEISLNPHGTRALQKLIECIKTDEEAQIVVDSLRPYTVQLSK 151
Query: 612 DLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIGRHRDK 671
           DLNGNHV+Q+CLQ L  E+ +    FDA +  C+DIATH+HGCCVLQRC+ H      D 
Sbjct: 152 DLNGNHVIQKCLQRLKPENFQ--FIFDAISDSCIDIATHRHGCCVLQRCLDHGTTEQCDN 209
Query: 672 LITEISKNGRHLAQDPFGNYVVQYII----ELKIPSVSANLLSQFKGHYVHLSTQKFSSH 727
           L  ++      L  DPFGNYVVQYII    E      +  ++   K   + LS  KF S+
Sbjct: 210 LCDKLLALVDKLTLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLKPRAIELSIHKFGSN 269
Query: 728 VVEKCLKHFGESRSQIVHELLS---VPHFEQLLQDPFANYVIQCALSVTKGP---LHASL 781
           V+EK LK    S   I+ E+L+       + LL D + NYV+Q AL ++      L+  L
Sbjct: 270 VIEKILKTAIVSEPMIL-EILNNGGETGIQSLLNDSYGNYVLQTALDISHKQNDYLYKRL 328
Query: 782 IE--AARRHTNLRTSPYCKRIF 801
            E  A      +R +P+ KRI 
Sbjct: 329 SEIVAPLLVGPIRNTPHGKRII 350
>pdb|3BX2|A Chain A, Puf4 Rna Binding Domain Bound To Ho Endonuclease Rna 3' Utr Recognition Sequence Length = 335 Back     alignment and structure
>pdb|3BWT|A Chain A, Crystal Structure Of The Rna Binding Domain Of Puf4 From Saccharomyces Cerevisiae Length = 333 Back     alignment and structure
>pdb|3BX3|A Chain A, Puf4 T650cC724R MUTANT BOUND TO COX17 RNA 3' UTR Recognition Sequence Length = 335 Back     alignment and structure
>pdb|3GVO|A Chain A, Structure And Rna Binding Of The Mouse Pumilio-2 Puf Domain Length = 351 Back     alignment and structure
>pdb|3Q0Q|A Chain A, Crystal Structure Of The Pumilio-Homology Domain From Human Pumilio2 In Complex With P38alpha Nrea Length = 351 Back     alignment and structure
>pdb|1IB2|A Chain A, Crystal Structure Of A Pumilio-Homology Domain Length = 349 Back     alignment and structure
>pdb|3BSB|A Chain A, Crystal Structure Of Human Pumilio1 In Complex With Cyclinb Reverse Rna Length = 343 Back     alignment and structure
>pdb|2YJY|A Chain A, A Specific And Modular Binding Code For Cytosine Recognition In Puf Domains Length = 350 Back     alignment and structure
>pdb|3H3D|X Chain X, Drosophila Pumilio Rna Binding Domain (Puf Domain) Length = 323 Back     alignment and structure
>pdb|3K49|A Chain A, Puf3 Rna Binding Domain Bound To Cox17 Rna 3' Utr Recognition Sequence Site B Length = 369 Back     alignment and structure
>pdb|3K49|A Chain A, Puf3 Rna Binding Domain Bound To Cox17 Rna 3' Utr Recognition Sequence Site B Length = 369 Back     alignment and structure
>pdb|3QG9|A Chain A, Crystal Structure Of Fbf-2GLD-1 Fbea A7u Mutant Complex Length = 413 Back     alignment and structure
>pdb|3K5Q|A Chain A, Crystal Structure Of Fbf-2FBE COMPLEX Length = 412 Back     alignment and structure
>pdb|3QGB|A Chain A, Crystal Structure Of Fbf-2 R288y Mutant In Complex With Gld-1 Fbea Length = 413 Back     alignment and structure
>pdb|3V71|A Chain A, Crystal Structure Of Puf-6 In Complex With 5be13 Rna Length = 382 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query808
3gvo_A351 Pumilio 2, pumilio homolog 2; RNA-binding, PUF dom 1e-124
3gvo_A351 Pumilio 2, pumilio homolog 2; RNA-binding, PUF dom 7e-46
3gvo_A 351 Pumilio 2, pumilio homolog 2; RNA-binding, PUF dom 5e-27
3k49_A369 MRNA-binding protein PUF3; PUF3, pumilio, RNA bind 1e-118
3k49_A 369 MRNA-binding protein PUF3; PUF3, pumilio, RNA bind 2e-38
3k49_A 369 MRNA-binding protein PUF3; PUF3, pumilio, RNA bind 4e-27
3k49_A369 MRNA-binding protein PUF3; PUF3, pumilio, RNA bind 1e-11
3bwt_A333 Protein PUF4; pumilio, RNA binding, HO endonucleas 1e-114
3bwt_A333 Protein PUF4; pumilio, RNA binding, HO endonucleas 5e-11
3bwt_A 333 Protein PUF4; pumilio, RNA binding, HO endonucleas 2e-08
3v71_A382 PUF (pumilio/FBF) domain-containing protein 7, CO 1e-97
3v71_A382 PUF (pumilio/FBF) domain-containing protein 7, CO 2e-33
3v71_A 382 PUF (pumilio/FBF) domain-containing protein 7, CO 1e-20
3v71_A382 PUF (pumilio/FBF) domain-containing protein 7, CO 3e-20
3k62_A412 FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding fa 3e-89
3k62_A412 FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding fa 1e-34
3k62_A 412 FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding fa 7e-31
3k62_A 412 FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding fa 3e-20
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-17
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-08
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X Length = 351 Back     alignment and structure
 Score =  376 bits (968), Expect = e-124
 Identities = 99/324 (30%), Positives = 177/324 (54%), Gaps = 13/324 (4%)

Query: 487 LADVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKL 546
           L D+ G+I   ++DQ+G RF+Q+  +  T  + QI+F+E++    +LM + FGNY++QK 
Sbjct: 21  LRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKF 80

Query: 547 LNVCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGF 606
               + +Q   +   +    G ++ + L  YG RV+QK +E++ + QQ  +VK  L    
Sbjct: 81  FEFGSLDQKLALATRIR---GHVLPLALQMYGCRVIQKALESISSDQQSEMVKE-LDGHV 136

Query: 607 LDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIG 666
           L  +KD NGNHV+Q+C++C+  +  +     DA       ++TH +GC V+QR + H   
Sbjct: 137 LKCVKDQNGNHVVQKCIECVQPQSLQ--FIIDAFKGQVFVLSTHPYGCRVIQRILEHCTA 194

Query: 667 RHRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSS 726
                ++ E+ ++   L QD +GNYV+Q+++E   P   + ++S+ +G  + LS  KF+S
Sbjct: 195 EQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFAS 254

Query: 727 HVVEKCLKHFG-ESRSQIVHELLSVP-----HFEQLLQDPFANYVIQCALSVTKGPLHAS 780
           +VVEKC+ H     R+ ++ E+             +++D +ANYV+Q  + + +      
Sbjct: 255 NVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKI 314

Query: 781 LIEAARRH-TNLRTSPYCKRIFSR 803
           ++   R H T LR   Y K I ++
Sbjct: 315 IMHKIRPHITTLRKYTYGKHILAK 338
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X Length = 351 Back     alignment and structure
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X Length = 351 Back     alignment and structure
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} PDB: 3k4e_A Length = 369 Back     alignment and structure
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} PDB: 3k4e_A Length = 369 Back     alignment and structure
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} PDB: 3k4e_A Length = 369 Back     alignment and structure
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} PDB: 3k4e_A Length = 369 Back     alignment and structure
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A Length = 333 Back     alignment and structure
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A Length = 333 Back     alignment and structure
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A Length = 333 Back     alignment and structure
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans} Length = 382 Back     alignment and structure
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans} Length = 382 Back     alignment and structure
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans} Length = 382 Back     alignment and structure
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans} Length = 382 Back     alignment and structure
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A Length = 412 Back     alignment and structure
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A Length = 412 Back     alignment and structure
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A Length = 412 Back     alignment and structure
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A Length = 412 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query808
3gvo_A351 Pumilio 2, pumilio homolog 2; RNA-binding, PUF dom 100.0
3bwt_A333 Protein PUF4; pumilio, RNA binding, HO endonucleas 100.0
3k49_A369 MRNA-binding protein PUF3; PUF3, pumilio, RNA bind 100.0
3k62_A412 FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding fa 100.0
3v71_A382 PUF (pumilio/FBF) domain-containing protein 7, CO 100.0
3gvo_A351 Pumilio 2, pumilio homolog 2; RNA-binding, PUF dom 100.0
3k62_A412 FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding fa 100.0
3v71_A382 PUF (pumilio/FBF) domain-containing protein 7, CO 100.0
3k49_A369 MRNA-binding protein PUF3; PUF3, pumilio, RNA bind 100.0
3bwt_A333 Protein PUF4; pumilio, RNA binding, HO endonucleas 100.0
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X Back     alignment and structure
Probab=100.00  E-value=4.7e-59  Score=508.18  Aligned_cols=313  Identities=32%  Similarity=0.582  Sum_probs=300.7

Q ss_pred             hHHHHhhhHHHHhhcCCccHHHHhhhccCCHHHHHHHHHHHhcchhhhccccchhHHHHHHHhhCCHHHHHHHHHHHhhc
Q 038006          486 SLADVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLNVCTEEQMTRILLMVTEE  565 (808)
Q Consensus       486 iLeei~GkI~eLA~Dq~GSRVLQklLE~~t~Eq~~~I~~eL~~~~~~L~~DqfGNHVVQKLLe~~seeqr~~Ii~iL~~l  565 (808)
                      .|+++.|+++++|+|++|||+||++|+.+++++++.|+.++.+++.+||+|+||||||||++++++++++..|   ++.+
T Consensus        20 ~l~~~~g~i~~la~dq~gsR~lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQklle~~~~~~~~~i---~~~i   96 (351)
T 3gvo_A           20 QLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLAL---ATRI   96 (351)
T ss_dssp             CGGGGTTCHHHHHTSHHHHHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHCCHHHHHHH---HHHH
T ss_pred             CHHHHHhHHHHHhcCCcchHHHHHHHhhCCHHHHHHHHHHHHHhHHHHHhChhhhHHHHHHHhhCCHHHHHHH---HHHH
Confidence            6889999999999999999999999999999999999999999999999999999999999999999999887   5677


Q ss_pred             cchhhhhhcCcccchhHhHHHhhcCcHHHHHHHHHHhccCccccccccCCchHHHHHHhhccccchhHHHHHHHHHHHHH
Q 038006          566 PGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCV  645 (808)
Q Consensus       566 ~g~iveLa~hkyGcrVVQKLLE~ls~~qqi~lLleeL~~~~~eLa~Dq~GNhVIQkILe~~s~~~~~~~~Iie~L~~~lv  645 (808)
                      .+++++|+.|+|||+|||++++.+.++++ ..+++++.+++..|++|++||||||+++++++++.+.+  |++.+.+++.
T Consensus        97 ~g~~~~l~~~~~G~rvvQk~le~~~~~~~-~~i~~el~~~~~~L~~d~~Gn~ViQk~l~~~~~~~~~~--i~~~~~~~~~  173 (351)
T 3gvo_A           97 RGHVLPLALQMYGCRVIQKALESISSDQQ-SEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQF--IIDAFKGQVF  173 (351)
T ss_dssp             TTCHHHHHTSTTHHHHHHHHHHHSCHHHH-HHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGTHH--HHHHTTTTHH
T ss_pred             HhhHHHHhhCHHhHHHHHHHHHhCCHHHH-HHHHHHhhhhHHHHHHhhhhhHHHHHHHHhCCHHHHHH--HHHHHHHHHH
Confidence            99999999999999999999999987655 56779999999999999999999999999999999999  9999999999


Q ss_pred             HHhcCccchhhHHHHHhhcchhhHHHHHHHHHHhHHhhhcCCCchHHHHHHHhhcCchhHHHHHHHHHHhhhhcccCcch
Q 038006          646 DIATHQHGCCVLQRCIAHSIGRHRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFS  725 (808)
Q Consensus       646 ~LS~~k~GS~VVQkcLe~as~e~r~~LIeeL~~~l~~La~DqyGNyVIQkLLe~~~~k~r~~Ii~~Lrg~lv~Ls~~KyG  725 (808)
                      .+++|+|||+|||+||++++++++..|+++|.+++..|++|+|||||||++|+.++++.+..|++.|++++..|+++|||
T Consensus       174 ~ls~~~~G~~Vvq~~le~~~~~~~~~ii~~l~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~l~~~~~~Ls~~k~g  253 (351)
T 3gvo_A          174 VLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFA  253 (351)
T ss_dssp             HHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHTSTTH
T ss_pred             HHHhCcHhHHHHHHHHHHCCHHHHHHHHHHHhhhHHhcCCCchHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHhcCcHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhh-hhhHHHHHHHHhCC-----chHHHHhcCCChhHHHHHHHhcCChhhHHHHHHHHhcc-cCccCCCCcc
Q 038006          726 SHVVEKCLKHF-GESRSQIVHELLSV-----PHFEQLLQDPFANYVIQCALSVTKGPLHASLIEAARRH-TNLRTSPYCK  798 (808)
Q Consensus       726 S~VLEKcL~~a-~k~Rk~II~eLl~~-----~~L~~La~DqyGNYVIQklL~~ad~~qre~Ll~eL~ph-~~Lr~sp~Gk  798 (808)
                      |+|+|+||+++ ++.|+.|+++++..     +.+..|++|+|||||||++|+.+++.+++.|++.|+|+ +.|++++||+
T Consensus       254 s~Vvek~l~~~~~~~r~~ii~el~~~~~~~~~~l~~l~~d~ygnyViq~~L~~~~~~~r~~i~~~i~~~~~~L~~~~~g~  333 (351)
T 3gvo_A          254 SNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGK  333 (351)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHSCEETTEEHHHHHHHSTTHHHHHHHHHHHCCHHHHHHHHHHHGGGHHHHTTSTTTH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHhcccCCCChHHHHccCCcchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCchH
Confidence            99999999999 88999999999963     36999999999999999999999999999999999999 9999999999


Q ss_pred             hhhhhh
Q 038006          799 RIFSRN  804 (808)
Q Consensus       799 rVls~~  804 (808)
                      +|++++
T Consensus       334 ~i~~kl  339 (351)
T 3gvo_A          334 HILAKL  339 (351)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999875
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A Back     alignment and structure
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A Back     alignment and structure
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A Back     alignment and structure
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans} Back     alignment and structure
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X Back     alignment and structure
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A Back     alignment and structure
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans} Back     alignment and structure
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A Back     alignment and structure
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 808
d1m8za_339 a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [Ta 2e-76
d1m8za_339 a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [Ta 1e-25
d1m8za_ 339 a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [Ta 3e-14
d1m8za_ 339 a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [Ta 6e-09
>d1m8za_ a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 339 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Pumilio repeat
domain: Pumilio 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  249 bits (636), Expect = 2e-76
 Identities = 96/324 (29%), Positives = 180/324 (55%), Gaps = 13/324 (4%)

Query: 487 LADVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKL 546
           L ++ G+I   ++DQ+G RF+Q   +  T  + Q++F+E++    +LM++ FGNY++QK 
Sbjct: 19  LREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKF 78

Query: 547 LNVCTEEQMTRILLMVTEEPGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGF 606
               + EQ   +   +    G ++ + L  YG RV+QK +E + + QQ  +V+  L    
Sbjct: 79  FEFGSLEQKLALAERIR---GHVLSLALQMYGCRVIQKALEFIPSDQQNEMVR-ELDGHV 134

Query: 607 LDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCVDIATHQHGCCVLQRCIAHSIG 666
           L  +KD NGNHV+Q+C++C+  +  +     DA       ++TH +GC V+QR + H + 
Sbjct: 135 LKCVKDQNGNHVVQKCIECVQPQSLQ--FIIDAFKGQVFALSTHPYGCRVIQRILEHCLP 192

Query: 667 RHRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFSS 726
                ++ E+ ++   L QD +GNYV+Q+++E   P   + ++++ +G+ + LS  KF+S
Sbjct: 193 DQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFAS 252

Query: 727 HVVEKCLKHFGES-RSQIVHELLSV-----PHFEQLLQDPFANYVIQCALSVTKGPLHAS 780
           +VVEKC+ H   + R+ ++ E+ ++          +++D +ANYV+Q  + V +      
Sbjct: 253 NVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKI 312

Query: 781 LIEAARRH-TNLRTSPYCKRIFSR 803
           ++   R H   LR   Y K I ++
Sbjct: 313 VMHKIRPHIATLRKYTYGKHILAK 336
>d1m8za_ a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 339 Back     information, alignment and structure
>d1m8za_ a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 339 Back     information, alignment and structure
>d1m8za_ a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 339 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query808
d1m8za_339 Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1m8za_339 Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]} 100.0
>d1m8za_ a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Pumilio repeat
domain: Pumilio 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-52  Score=449.81  Aligned_cols=313  Identities=30%  Similarity=0.573  Sum_probs=297.9

Q ss_pred             hHHHHhhhHHHHhhcCCccHHHHhhhccCCHHHHHHHHHHHhcchhhhccccchhHHHHHHHhhCCHHHHHHHHHHHhhc
Q 038006          486 SLADVRGYIYSMAKDQNGCRFLQRVFDEGTFLDLQIIFDEVIDHIVELMMEQFGNYLVQKLLNVCTEEQMTRILLMVTEE  565 (808)
Q Consensus       486 iLeei~GkI~eLA~Dq~GSRVLQklLE~~t~Eq~~~I~~eL~~~~~~L~~DqfGNHVVQKLLe~~seeqr~~Ii~iL~~l  565 (808)
                      .|++++|+++++|+||+|||+||++|+.++++++..|++++.+++.+||+|+|||||+||++++++++++..|   +..+
T Consensus        18 ~l~~~~g~~~~~~~~q~gSr~lQ~~l~~~~~~~~~~I~~~l~~~~~~L~~~~~gn~vvqkll~~~~~~~~~~i---~~~l   94 (339)
T d1m8za_          18 QLREIAGHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLAL---AERI   94 (339)
T ss_dssp             CGGGGTTCHHHHHTSHHHHHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHH---HHHH
T ss_pred             cHHHHHhHHHHHhcCchhhHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhhCcccchhHHHHHhhCCHHHHHHH---HHHH
Confidence            4778999999999999999999999999999999999999999999999999999999999999999998877   6677


Q ss_pred             cchhhhhhcCcccchhHhHHHhhcCcHHHHHHHHHHhccCccccccccCCchHHHHHHhhccccchhHHHHHHHHHHHHH
Q 038006          566 PGQLVRVCLNTYGTRVVQKLIETLKTRQQVSLVKAALKPGFLDLIKDLNGNHVLQRCLQCLSNEDNEVYLFFDAAAKFCV  645 (808)
Q Consensus       566 ~g~iveLa~hkyGcrVVQKLLE~ls~~qqi~lLleeL~~~~~eLa~Dq~GNhVIQkILe~~s~~~~~~~~Iie~L~~~lv  645 (808)
                      .+++.+|+.|+|||+|||++++...+.++ ..++.++.+++..++.|++|+||+|++++..++.....  |++.+.+.+.
T Consensus        95 ~~~~~~L~~~~~gs~Vvq~l~~~~~~~~~-~~l~~el~~~~~~l~~d~~~~~v~~~~l~~~~~~~~~~--i~~~~~~~~~  171 (339)
T d1m8za_          95 RGHVLSLALQMYGCRVIQKALEFIPSDQQ-NEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQF--IIDAFKGQVF  171 (339)
T ss_dssp             TTCHHHHHTSTTHHHHHHHHHHHSCHHHH-HHHHHTTTTCHHHHHHSTTHHHHHHHHHHHSCGGGGHH--HHHHTTTTHH
T ss_pred             HhhHHHHhcccccchHHHhhhccCCHHHH-HHHHHHHhhhhHHHhcCCCcchHHHHHHHhcCHHHHHH--HHHHHHHHHH
Confidence            99999999999999999999999877654 45678999999999999999999999999998888888  9999999999


Q ss_pred             HHhcCccchhhHHHHHhhcchhhHHHHHHHHHHhHHhhhcCCCchHHHHHHHhhcCchhHHHHHHHHHHhhhhcccCcch
Q 038006          646 DIATHQHGCCVLQRCIAHSIGRHRDKLITEISKNGRHLAQDPFGNYVVQYIIELKIPSVSANLLSQFKGHYVHLSTQKFS  725 (808)
Q Consensus       646 ~LS~~k~GS~VVQkcLe~as~e~r~~LIeeL~~~l~~La~DqyGNyVIQkLLe~~~~k~r~~Ii~~Lrg~lv~Ls~~KyG  725 (808)
                      +++++++||+|++++++.++++++..+++++.+++..|++|+|||||||++|+.++++.++.|++.|++++.+|+.+++|
T Consensus       172 ~l~~~~~g~~vlq~~l~~~~~~~~~~l~~~l~~~~~~L~~~~~G~~vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~k~g  251 (339)
T d1m8za_         172 ALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFA  251 (339)
T ss_dssp             HHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHHTHHHHTTSTTHHHHHHHHHHHSCHHHHHHHHHHHTTCHHHHHTSTTH
T ss_pred             HHHhCcchhHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHcchhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhh-hhhHHHHHHHHhC-----CchHHHHhcCCChhHHHHHHHhcCChhhHHHHHHHHhcc-cCccCCCCcc
Q 038006          726 SHVVEKCLKHF-GESRSQIVHELLS-----VPHFEQLLQDPFANYVIQCALSVTKGPLHASLIEAARRH-TNLRTSPYCK  798 (808)
Q Consensus       726 S~VLEKcL~~a-~k~Rk~II~eLl~-----~~~L~~La~DqyGNYVIQklL~~ad~~qre~Ll~eL~ph-~~Lr~sp~Gk  798 (808)
                      |+|+|+|+..+ ++.++.++.+++.     .+.|..|+.|+|||||||++|+.+++.+++.|+++|+|+ +.|++++||+
T Consensus       252 S~vve~~l~~~~~~~~~~~~~~l~~~~~~~~~~l~~L~~d~~gn~Viq~~l~~~~~~~~~~i~~~l~~~~~~L~~~~~G~  331 (339)
T d1m8za_         252 SNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGK  331 (339)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHHCEETTEEHHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTGGGHHHHTTSSTHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcccCchHHHHHHHcCCcccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCcHH
Confidence            99999999999 8889999998864     246999999999999999999999999999999999999 9999999999


Q ss_pred             hhhhhh
Q 038006          799 RIFSRN  804 (808)
Q Consensus       799 rVls~~  804 (808)
                      +|++++
T Consensus       332 ~v~~~l  337 (339)
T d1m8za_         332 HILAKL  337 (339)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999986
>d1m8za_ a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure