Citrus Sinensis ID: 038007

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230
Protein Sequence
MRVSCNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLRPAIFKSLLYEACGRIVNPIYGSVGLMWSGRWHLCQAAVEAVFRGEPVTPLSSESALQAGDIRHVSKDESSAAAAAVSDKLHKVKSRRFKRSAPKPRSKPERAADAKVVEPLLDNSGGESTSCDPELTQRDSGEGDSVSVETVEATLAKTDGGADGSDVDLELSLGFGI
Secondary Structure (PSIPRED)
ccccccHHHHcccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHccccccccEcccEEEcccccccccHEEEEEEHccHHHHHHHHHHccHHccHHHHHHHHHHHHccccccccHHHHHHHccHHHHHHHHHHHHHcccccccccHHHcccccccccccccccHHHccccccHHcccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccEccccccccccccccccccEEEEEEEcccc
Coil and Loop (DISEMBL)
mrvscngcrvlrkgcgencsirpclqwikspqcqaNATLFLAKFYGraglvnlinagpqdlrpAIFKSLLYEACGRivnpiygsvglmwsGRWHLCQAAVEAVfrgepvtplssesalqagdirhvskdesSAAAAAVSDKLHKVksrrfkrsapkprskperaadakvveplldnsggestscdpeltqrdsgegdsvSVETVEATLaktdggadgsdvDLELSLGFGI
Flexible Loop (DISEMBL)
mrvscngcrvlrkgcgenCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLRPAIFKSLLYEACGRIVNPIYGSVGLMWSGRWHLCQAAVEAVFRGEPVTPLSSESALQAGDIRHVSKDESSAAAaavsdklhkvksrrfkrsapkprskperaadakvveplldnsggestscdpeltqrdsgegdsVSVETVEATlaktdggadgsdvDLELSLGFGI
Low Complexity Region (SEG)
MRVSCNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLRPAIFKSLLYEACGRIVNPIYGSVGLMWSGRWHLCQAAVEAVFRGEPVTPLSSESALQAGDIRHVSKDEssaaaaaVSDKLHKVKSRRFKRSAPKPRSKPERAADAKVVEPLLDNSGGESTSCDPELTQRDSGEGDSVSVETVEATLAKTDGGADGSDVDLELSLGFGI
Disordered region (IsUnstruct)
****CNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLRPAIFKSLLYEACGRIVNPIYGSVGLMWSGRWHLCQAAVEAVFRG****************************************************************************************************************************
Disordered Region (DISOPRED)
**VSCNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLRPAIFKSLLYEACGRIVNPIYGSVGLMWSGRWHLCQAAVEAVFRGEPVT****************************************************************************************************************ELSLGFGI
Disordered Region (DISEMBL)
MRVSCNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLRPAIFKSLLYEACGRIVNPIYGSVGLMWSGRWHLCQAAVEAVFRGEPVTPLSSESALQAGD********************************************AKVVEPLLDN************************VETVEATLAKTDGGADGSDVDLELSLGFGI
Disordered Region (DISPRO)
***SCNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLRPAIFKSLLYEACGRIVNPIYGSVGLMWSGRWHLCQAAVEAVFRGEPVTPLSSESALQAGDIRHV*******************************************************************************************SDVDLELSLGFGI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRVSCNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLRPAIFKSLLYEACGRIVNPIYGSVGLMWSGRWHLCQAAVEAVFRGEPVTPLSSESALQAGDIRHVSKDESSAAAAAVSDKLHKVKSRRFKRSAPKPRSKPERAADAKVVEPLLDNSGGESTSCDPELTQRDSGEGDSVSVETVEATLAKTDGGADGSDVDLELSLGFGI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	230	2.2.26 [Sep-21-2011]
Q9M886	263	LOB domain-containing pro	yes	no	0.943	0.825	0.548	1e-61
Q9ZW96	233	LOB domain-containing pro	no	no	0.569	0.562	0.737	1e-56
Q9CA30	233	LOB domain-containing pro	no	no	0.669	0.660	0.621	4e-53
Q9SN23	247	LOB domain-containing pro	no	no	0.478	0.445	0.636	1e-40
Q9FN11	250	LOB domain-containing pro	no	no	0.478	0.44	0.609	7e-40
Q9SZE8	240	LOB domain-containing pro	no	no	0.552	0.529	0.569	1e-39
O64836	311	LOB domain-containing pro	no	no	0.373	0.276	0.318	3e-08
Q9FKZ3	313	LOB domain-containing pro	no	no	0.343	0.252	0.321	2e-06
Q9LQR0	190	LOB domain-containing pro	no	no	0.347	0.421	0.282	2e-05
Q9SK08	232	LOB domain-containing pro	no	no	0.347	0.344	0.258	6e-05

>sp|Q9M886|LBD41_ARATH LOB domain-containing protein 41 OS=Arabidopsis thaliana GN=LBD41 PE=2 SV=1

 Score =  236 bits (602), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 129/235 (54%), Positives = 159/235 (67%), Gaps = 18/235 (7%)

Query: 1   MRVSCNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQD 60
           MR+SCNGCRVLRKGC E+CSIRPCL WIKSP+ QANAT+FLAKFYGRAGL+NLINAGP  
Sbjct: 1   MRMSCNGCRVLRKGCSEDCSIRPCLAWIKSPEAQANATVFLAKFYGRAGLMNLINAGPNH 60

Query: 61  LRPAIFKSLLYEACGRIVNPIYGSVGLMWSGRWHLCQAAVEAVFRGEPVTPLSSESA--- 117
           LRP IF+SLL+EACGRIVNPIYGSVGL+WSG W LCQ AVEAV +GEPV  +++++A   
Sbjct: 61  LRPGIFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQDAVEAVMKGEPVKEIATDAATIG 120

Query: 118 ----LQAGDIRHVSKDESSAAAAAVSDKLHKVKSRRFKR-SAPKPRSKPERAADAKVVEP 172
               L+  DIRH+SKD++SAAAA  S  L   K+RR KR S    +++ E  +D      
Sbjct: 121 QGPPLKIYDIRHISKDDNSAAAATGSTDLKLAKTRRAKRVSTVAIQAESEGKSD------ 174

Query: 173 LLDNSGGESTSCDPELTQRDSGEGDSVSVETVEATLAKTDGGADGS-DVDLELSL 226
             + S   S S   E+     GE    S   V   LA +     GS ++ L+L+L
Sbjct: 175 --EASHDSSLSHQSEIVAAHEGESKE-SESNVSEVLAFSPPAVKGSGEIKLDLTL 226

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZW96|LBD40_ARATH LOB domain-containing protein 40 OS=Arabidopsis thaliana GN=LBD40 PE=2 SV=1

 Score =  219 bits (558), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 104/141 (73%), Positives = 119/141 (84%), Gaps = 10/141 (7%)

Query: 1   MRVSCNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQD 60
           MR+SCNGCRVLRKGC ENCSIRPCLQWIKS + QANAT+FLAKFYGRAGL+NL+N GP  
Sbjct: 1   MRMSCNGCRVLRKGCSENCSIRPCLQWIKSAESQANATVFLAKFYGRAGLMNLLNTGPDH 60

Query: 61  LRPAIFKSLLYEACGRIVNPIYGSVGLMWSGRWHLCQAAVEAVFRGEPVTPLSSESAL-- 118
           LRPAIF+SLLYEACGRIVNPIYGSVGL+WSG WHLCQAAVEAV RG PVTP++ ++A+  
Sbjct: 61  LRPAIFRSLLYEACGRIVNPIYGSVGLLWSGNWHLCQAAVEAVMRGSPVTPIACDAAVTG 120

Query: 119 -------QAGDIRHV-SKDES 131
                  +  DIRHV S+DE+
Sbjct: 121 QAPPFNNKLCDIRHVSSRDEN 141

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CA30|LBD42_ARATH LOB domain-containing protein 42 OS=Arabidopsis thaliana GN=LBD42 PE=2 SV=1

 Score =  207 bits (528), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 105/169 (62%), Positives = 123/169 (72%), Gaps = 15/169 (8%)

Query: 1   MRVSCNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQD 60
           MR+SCNGCRVLRKGC ++C+IRPCLQWIKS   QANATLFLAKFYGRAGL+NLI +GP  
Sbjct: 1   MRISCNGCRVLRKGCNQDCTIRPCLQWIKSADSQANATLFLAKFYGRAGLLNLIESGPDH 60

Query: 61  LRPAIFKSLLYEACGRIVNPIYGSVGLMWSGRWHLCQAAVEAVFRGEPV--TPLSSESA- 117
           LRPAIF+SLLYEACGRIVNP+ GSVGLMWSG W  CQAAV+AV  G P+  TPL S SA 
Sbjct: 61  LRPAIFRSLLYEACGRIVNPVDGSVGLMWSGNWAQCQAAVDAVLNGLPITHTPLPSASAS 120

Query: 118 ------LQAGDIRHVSKDESSAA------AAAVSDKLHKVKSRRFKRSA 154
                  +  DIRHV+KD ++        A  V+    K ++ RFKR +
Sbjct: 121 HQIIPPHRTYDIRHVAKDPTTGGDSSENLATRVNANKSKTQTGRFKRES 169

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SN23|LBD38_ARATH LOB domain-containing protein 38 OS=Arabidopsis thaliana GN=LBD38 PE=2 SV=1

 Score =  166 bits (420), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 70/110 (63%), Positives = 93/110 (84%)

Query: 3   VSCNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLR 62
           +SCNGCRVLRKGC ENC +RPC+QWI+SP+ Q +AT+F+AKF+GRAGL++ I+A P+   
Sbjct: 1   MSCNGCRVLRKGCSENCILRPCIQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPESQC 60

Query: 63  PAIFKSLLYEACGRIVNPIYGSVGLMWSGRWHLCQAAVEAVFRGEPVTPL 112
           PA+F+SLLYEACGR VNP+ G+VGL+W+G W++CQAAVE V RG  + P+
Sbjct: 61  PALFQSLLYEACGRTVNPVNGAVGLLWTGNWNVCQAAVETVLRGGSLKPI 110

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FN11|LBD37_ARATH LOB domain-containing protein 37 OS=Arabidopsis thaliana GN=LBD37 PE=2 SV=1

 Score =  164 bits (414), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 67/110 (60%), Positives = 91/110 (82%)

Query: 3   VSCNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLR 62
           +SCNGCRVLRKGC ENC +RPC+QWI++   Q +AT+F+AKF+GRAGL++ I+A P   R
Sbjct: 1   MSCNGCRVLRKGCSENCILRPCIQWIETADAQGHATVFVAKFFGRAGLMSFISAVPDSQR 60

Query: 63  PAIFKSLLYEACGRIVNPIYGSVGLMWSGRWHLCQAAVEAVFRGEPVTPL 112
           PA+F+SLLYEACGR VNP+ G++G++W+G W++CQAAVE V RG  + P+
Sbjct: 61  PALFQSLLYEACGRTVNPVNGAIGMLWTGNWNICQAAVETVLRGGSLRPI 110

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZE8|LBD39_ARATH LOB domain-containing protein 39 OS=Arabidopsis thaliana GN=LBD39 PE=2 SV=1

 Score =  162 bits (411), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 74/130 (56%), Positives = 99/130 (76%), Gaps = 3/130 (2%)

Query: 3   VSCNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLR 62
           +SCNGCRVLRKGC E C +RPCLQWI+S + Q +AT+F+AKF+GRAGL++ I++ P+  R
Sbjct: 1   MSCNGCRVLRKGCSETCILRPCLQWIESAESQGHATVFVAKFFGRAGLMSFISSVPELQR 60

Query: 63  PAIFKSLLYEACGRIVNPIYGSVGLMWSGRWHLCQAAVEAVFRGEPVTPLSSESALQAGD 122
           PA+F+SLL+EACGR VNP+ G+VG++W+  WH+CQAAVE V RG  + P+S    L    
Sbjct: 61  PALFQSLLFEACGRTVNPVNGAVGMLWTRNWHVCQAAVETVLRGGTLRPISD---LLESP 117

Query: 123 IRHVSKDESS 132
              +S DESS
Sbjct: 118 SLMISCDESS 127

Arabidopsis thaliana (taxid: 3702)

>sp|O64836|LBD10_ARATH LOB domain-containing protein 10 OS=Arabidopsis thaliana GN=LBD10 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 5/91 (5%)

Query: 5  CNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLRPA 64
          C  C++LR+ C + C   P       P       +F+ + +G + +  ++N  P D R  
Sbjct: 6  CAACKLLRRKCTQECVFAPYF-----PPTNPQKFIFVHRVFGASNVTKILNDLPPDQRED 60

Query: 65 IFKSLLYEACGRIVNPIYGSVGLMWSGRWHL 95
             SL YEA  RI +PIYG VGL+   + +L
Sbjct: 61 TVNSLFYEAEARIRDPIYGCVGLISFLQQYL 91

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKZ3|LBD36_ARATH LOB domain-containing protein 36 OS=Arabidopsis thaliana GN=LBD36 PE=2 SV=1

 Score = 52.8 bits (125), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 5/84 (5%)

Query: 5  CNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLRPA 64
          C  C+ LR+ C + C   P       P  Q     F+ K +G + +  L+N    + R  
Sbjct: 8  CAACKFLRRKCTQECVFAPYF-----PPDQPQKFAFVHKVFGASNVAKLLNELASNQRED 62

Query: 65 IFKSLLYEACGRIVNPIYGSVGLM 88
             SL YEA  R+ +P+YG VGL+
Sbjct: 63 AVNSLFYEAEARLRDPVYGCVGLI 86

Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQR0|LBD1_ARATH LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1

 Score = 49.3 bits (116), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 5   CNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLRPA 64
           C  C++LR+ C E C + P       P   A  T+   + +G + ++  +   P+  R  
Sbjct: 34  CAACKILRRRCAERCVLAPYF----PPTDPAKFTI-AHRVFGASNIIKFLQELPESQRTD 88

Query: 65  IFKSLLYEACGRIVNPIYGSVGLMW 89
              S++YEA  RI +P+YG  G ++
Sbjct: 89  AVNSMVYEAEARIRDPVYGCAGAIY 113

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SK08|LBD11_ARATH LOB domain-containing protein 11 OS=Arabidopsis thaliana GN=LBD11 PE=2 SV=2

 Score = 48.1 bits (113), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 5   CNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLRPA 64
           C  C++LR+ C + C + P       P   A  T+   + +G + ++  +   P+  R  
Sbjct: 56  CAACKILRRRCADKCVLAPYF----PPTDPAKFTI-AHRVFGASNIIKFLQELPESQRTD 110

Query: 65  IFKSLLYEACGRIVNPIYGSVGLMW 89
              S++YEA  R+ +P+YG  G ++
Sbjct: 111 AVNSMVYEAGARMRDPVYGCAGAIY 135

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	230
255585442	239	LOB domain-containing protein, putative	0.995	0.958	0.644	1e-78
225455928	272	PREDICTED: LOB domain-containing protein	0.969	0.819	0.629	5e-75
356573974	293	PREDICTED: LOB domain-containing protein	0.965	0.757	0.548	8e-67
297734202	227	unnamed protein product [Vitis vinifera]	0.791	0.801	0.584	1e-66
356545723	288	PREDICTED: LOB domain-containing protein	0.965	0.770	0.571	4e-66
449440939	244	PREDICTED: LOB domain-containing protein	0.917	0.864	0.562	5e-66
356569068	301	PREDICTED: LOB domain-containing protein	0.965	0.737	0.530	2e-65
225452030	283	PREDICTED: LOB domain-containing protein	0.882	0.717	0.567	2e-64
388509766	287	unknown [Medicago truncatula]	0.982	0.787	0.531	5e-64
224118826	231	predicted protein [Populus trichocarpa]	0.952	0.948	0.586	3e-63

>gi|255585442|ref|XP_002533415.1| LOB domain-containing protein, putative [Ricinus communis] gi|223526744|gb|EEF28973.1| LOB domain-containing protein, putative [Ricinus communis]

 Score =  298 bits (764), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 154/239 (64%), Positives = 184/239 (76%), Gaps = 10/239 (4%)

Query: 1   MRVSCNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQD 60
           MR+SC+GCRVLRKGC ++C+I+PCLQW+ SP+ QANATLFLAKFYGRAGL+NLINAGPQ 
Sbjct: 1   MRLSCSGCRVLRKGCSDDCTIKPCLQWLNSPKSQANATLFLAKFYGRAGLINLINAGPQH 60

Query: 61  LRPAIFKSLLYEACGRIVNPIYGSVGLMWSGRWHLCQAAVEAVFRGEPVTPLSS--ESAL 118
           LRPAIFKSLLYEACGRIVNP+YGSVGL+W+  W LCQAAVEAV RGEP+  +SS  E A+
Sbjct: 61  LRPAIFKSLLYEACGRIVNPVYGSVGLLWTRNWQLCQAAVEAVLRGEPIKQISSSNELAI 120

Query: 119 QAGDIRHVSKDESSAAAAAVSDKLHKVKSR---RFKRSAPKPRSKPERAADAKVVEPLLD 175
            A +IRHV KD+S A   AVSD+LHK+K +   +FKRSA KP+ K E A + +    LL 
Sbjct: 121 NACEIRHVYKDDSLATMPAVSDQLHKIKRKPKSQFKRSASKPKLKVEPALEFEAETGLLS 180

Query: 176 NSGGES----TSCDPELTQRDSGEGDSVSVETVEATLAKTDGGADGSDVDLELSLGFGI 230
            SG  S     S  P +   DSGEGDS+S ETVEA+LAK D  ADGS+V+LEL+LG  I
Sbjct: 181 LSGLASHDSGVSWRPTI-DSDSGEGDSMSAETVEASLAKLDEQADGSNVELELTLGLKI 238

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455928|ref|XP_002276899.1| PREDICTED: LOB domain-containing protein 41 [Vitis vinifera]

 Score =  286 bits (732), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 151/240 (62%), Positives = 183/240 (76%), Gaps = 17/240 (7%)

Query: 1   MRVSCNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQD 60
           MR+SCNGCRVLRKGC ++C++RPCLQWIK+P  QANAT+FLAKFYGRAGL+NLINAGP+ 
Sbjct: 1   MRMSCNGCRVLRKGCNDSCTLRPCLQWIKNPDFQANATVFLAKFYGRAGLINLINAGPEH 60

Query: 61  LRPAIFKSLLYEACGRIVNPIYGSVGLMWSGRWHLCQAAVEAVFRGEPVTPLSSESA--- 117
           LRPAIF+SLLYEACGRIVNPIYGS GL+WSG W LCQ+AVEAV  G P+  +S+ESA   
Sbjct: 61  LRPAIFRSLLYEACGRIVNPIYGSAGLLWSGSWQLCQSAVEAVLSGAPIMQISAESAVSS 120

Query: 118 ----LQAGDIRHVSKDESSAAAAAVSDKLHKVKSR-RFKRSAPKPRSKPERAADA-KVVE 171
               L+AGDIRHVSKDE+SA +   S +LHKVKSR RFKRS+ KPR++ E AA+  +   
Sbjct: 121 MSPPLKAGDIRHVSKDENSAGS---SHELHKVKSRGRFKRSSGKPRARVESAAEFDESAG 177

Query: 172 PLLDNSGGESTSCDPELTQ---RDSGEGDSVSVETVEATLAKTDGGADGSDVDLELSLGF 228
            +L        S D  ++    R+SGE DS+SVETVEA+L K     DGSDV+LEL+LG 
Sbjct: 178 VILSRCYKSELSRDSRVSHPGSRESGEADSMSVETVEASLVKPT--RDGSDVELELTLGL 235

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573974|ref|XP_003555129.1| PREDICTED: LOB domain-containing protein 41-like [Glycine max]

 Score =  259 bits (661), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 141/257 (54%), Positives = 177/257 (68%), Gaps = 35/257 (13%)

Query: 1   MRVSCNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQD 60
           MR+SCNGCRVLRKGC E+CSIRPCLQWIK+P+ QANAT+FLAKFYGRAGL+NLINAGP+ 
Sbjct: 1   MRMSCNGCRVLRKGCSEDCSIRPCLQWIKNPESQANATVFLAKFYGRAGLMNLINAGPES 60

Query: 61  LRPAIFKSLLYEACGRIVNPIYGSVGLMWSGRWHLCQAAVEAVFRGEPVTPLSSESA--- 117
           LRPAIF+SLLYEACGRIVNPIYGSVGL+WSG W LCQAAVEA+ +GEP+TP++SE+A   
Sbjct: 61  LRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAILKGEPITPITSEAAANG 120

Query: 118 ----LQAGDIRHVSKDESSAAAAAVSDKLHKVKSR-RFKRSAP---KPRSKPERAADAKV 169
               L+A DIRHVSKDE+SA      ++  K K+R RF R+     KP++          
Sbjct: 121 RAPPLKAYDIRHVSKDENSA------NETPKAKTRSRFNRTGSTLIKPKASKGTPTGFVP 174

Query: 170 VEPLLDNSGGESTSCDPELTQRDSG----EGDS------VSVETVE------ATLAKTD- 212
           +EP+   +   +TS +  L+         EG+S      VSVET         ++AKT  
Sbjct: 175 IEPVEPETANRTTSHESGLSHLSEAAVMVEGESKESESDVSVETSNLFHEEPESVAKTSD 234

Query: 213 -GGADGSDVDLELSLGF 228
             G  G+++ LEL+LGF
Sbjct: 235 RTGESGNEIGLELTLGF 251

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734202|emb|CBI15449.3| unnamed protein product [Vitis vinifera]

 Score =  258 bits (659), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 138/236 (58%), Positives = 162/236 (68%), Gaps = 54/236 (22%)

Query: 1   MRVSCNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQD 60
           MR+SCNGCRVLRKGC ++C++RPCLQWIK+P  QANAT+FLAKFYGRAGL+NLINAGP+ 
Sbjct: 1   MRMSCNGCRVLRKGCNDSCTLRPCLQWIKNPDFQANATVFLAKFYGRAGLINLINAGPEH 60

Query: 61  LRPAIFKSLLYEACGRIVNPIYGSVGLMWSGRWHLCQAAVEAVFRGEPVTPLSSESA--- 117
           LRPAIF+SLLYEACGRIVNPIYGS GL+WSG W LCQ+AVEAV  G P+  +S+ESA   
Sbjct: 61  LRPAIFRSLLYEACGRIVNPIYGSAGLLWSGSWQLCQSAVEAVLSGAPIMQISAESAVSS 120

Query: 118 ----LQAGDIRHVSKDESSAAAAAVSDKLHKVKSR-RFKRSAPKPRSKPERAADAKVVEP 172
               L+AGDIRHVSKDE+SA +   S +LHKVKSR RFKRS                   
Sbjct: 121 MSPPLKAGDIRHVSKDENSAGS---SHELHKVKSRGRFKRS------------------- 158

Query: 173 LLDNSGGESTSCDPELTQRDSGEGDSVSVETVEATLAKTDGGADGSDVDLELSLGF 228
                                 + DS+SVETVEA+L K     DGSDV+LEL+LG 
Sbjct: 159 ----------------------KADSMSVETVEASLVKPT--RDGSDVELELTLGL 190

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545723|ref|XP_003541285.1| PREDICTED: LOB domain-containing protein 41-like [Glycine max]

 Score =  256 bits (655), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 144/252 (57%), Positives = 179/252 (71%), Gaps = 30/252 (11%)

Query: 1   MRVSCNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQD 60
           MR+SCNGCRVLRKGC E+CSIRPCLQWIK+P+ QANAT+FLAKFYGRAGL+NLINAGP++
Sbjct: 1   MRMSCNGCRVLRKGCSEDCSIRPCLQWIKNPESQANATVFLAKFYGRAGLMNLINAGPEN 60

Query: 61  LRPAIFKSLLYEACGRIVNPIYGSVGLMWSGRWHLCQAAVEAVFRGEPVTPLSSESA--- 117
           LRPAIF+SLLYEACGRIVNPIYGSVGL+WSG W LCQAAVEAV +GEP+TP++SE+A   
Sbjct: 61  LRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGEPITPITSEAAANG 120

Query: 118 ----LQAGDIRHVSKDESSAAAAAVSDKLHKVKSR-RFKR-SAPKPRSKPERAADAKVVE 171
               L+A DIRHVSKD++SA      ++  K K+R RFKR S    + K  +      VE
Sbjct: 121 RAPPLKAYDIRHVSKDQNSA------NETPKTKTRSRFKRTSGTLIKPKASKGTGFVPVE 174

Query: 172 PLLDN------SGGESTSCDPELTQRDSGEGDS-VSVETVEAT------LAKT-DG-GAD 216
           P + N      SG    S    + + +S E +S VS++T          +AKT DG G  
Sbjct: 175 PEMANRTASHESGLSHLSEATAMVEGESKESESVVSMDTSNLIHEEPEWVAKTSDGTGES 234

Query: 217 GSDVDLELSLGF 228
           G+++ LEL+LGF
Sbjct: 235 GNEIGLELTLGF 246

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440939|ref|XP_004138241.1| PREDICTED: LOB domain-containing protein 41-like [Cucumis sativus] gi|449477065|ref|XP_004154919.1| PREDICTED: LOB domain-containing protein 41-like [Cucumis sativus]

 Score =  256 bits (654), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 144/256 (56%), Positives = 173/256 (67%), Gaps = 45/256 (17%)

Query: 1   MRVSCNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQD 60
           MR+SCNGCRVLRKGC E+CSIRPCLQWIKSPQ QANAT FLAKFYGRAGLVNLINAGP  
Sbjct: 1   MRMSCNGCRVLRKGCSESCSIRPCLQWIKSPQSQANATFFLAKFYGRAGLVNLINAGPDH 60

Query: 61  LRPAIFKSLLYEACGRIVNPIYGSVGLMWSGRWHLCQAAVEAVFRGEPVTPLSSESA--- 117
           LRPAIFKSLL+EACGRIVNPI+GS GL+WSG W LCQ AVEAV +G P+ P+SSE+A   
Sbjct: 61  LRPAIFKSLLFEACGRIVNPIFGSAGLLWSGSWQLCQDAVEAVLKGAPILPVSSETAASH 120

Query: 118 ----LQAGDIRHVSKDESSAAAAAVSDKLHKVKS-RRFKRSAP---KPRSKP-------- 161
               L+  DIRHVSK + SA+ +AV     K+K+ RRFKRS     KP+ +P        
Sbjct: 121 MGPPLKGCDIRHVSKQQDSASGSAV----RKIKTRRRFKRSGTAKLKPKEEPSVVVVPEF 176

Query: 162 ------ERAADAKVVEPLLDNSGGESTSCDPELTQRDSGEGDS--VSVETVEATLAKTDG 213
                 +  ++ + ++  LDN  G       E  ++D G  D+  +SVETVE        
Sbjct: 177 KFDDQTQIVSEPQCLKFELDNWKGR------ESPEKDCGSDDTECLSVETVE-------- 222

Query: 214 GADGSDVDLELSLGFG 229
           G  G DV+LEL+LGFG
Sbjct: 223 GCQGGDVELELTLGFG 238

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569068|ref|XP_003552728.1| PREDICTED: LOB domain-containing protein 41-like [Glycine max]

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 141/266 (53%), Positives = 172/266 (64%), Gaps = 44/266 (16%)

Query: 1   MRVSCNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQD 60
           MR+SCNGCRVLRKGC ENCSIRPCLQWIKSP+ QANAT+FLAKFYGRAGL+NL+NAGP+ 
Sbjct: 1   MRMSCNGCRVLRKGCSENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLVNAGPEH 60

Query: 61  LRPAIFKSLLYEACGRIVNPIYGSVGLMWSGRWHLCQAAVEAVFRGEPVTPLSSESA--- 117
           LRPAIF+SLLYEACGRI+NPIYGSVGL+WSG W LCQAAVE V +G P+TP++SE+A   
Sbjct: 61  LRPAIFRSLLYEACGRILNPIYGSVGLLWSGSWQLCQAAVENVLKGAPITPITSEAAASG 120

Query: 118 ----LQAGDIRHVSKDESSAAAAAVSDKLHKVKSR-RFKRSAPKPRSKPERAADAKVVEP 172
               L+A DIRHVSKDE+SAAA+  +    +VK+R R KR      +KP+   +      
Sbjct: 121 RGPPLKAYDIRHVSKDENSAAASNETQH-QRVKTRSRVKRPLANNNAKPKSTTNENN--- 176

Query: 173 LLDNSGGESTSCDPEL--------TQRDSGEGDS-----------------VSVETVEAT 207
             +N G E  S +P L            SG  DS                 +S ET E +
Sbjct: 177 --NNKGTELGSAEPSLVACEWTEEVMNRSGSHDSTLSHQSEAANAVESESMLSAETPETS 234

Query: 208 L-----AKTDGGADGSDVDLELSLGF 228
           +      +T+      DV LEL+LGF
Sbjct: 235 ILFREEPETNPKRVSDDVGLELTLGF 260

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452030|ref|XP_002283795.1| PREDICTED: LOB domain-containing protein 41 [Vitis vinifera] gi|147795554|emb|CAN72182.1| hypothetical protein VITISV_004355 [Vitis vinifera]

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 131/231 (56%), Positives = 162/231 (70%), Gaps = 28/231 (12%)

Query: 1   MRVSCNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQD 60
           MR+SCNGCRVLRKGC +NC+IRPCLQWIK+P+ QANAT+FLAKFYGRAGL+NLIN+GP+ 
Sbjct: 1   MRMSCNGCRVLRKGCSDNCTIRPCLQWIKTPESQANATVFLAKFYGRAGLMNLINSGPEH 60

Query: 61  LRPAIFKSLLYEACGRIVNPIYGSVGLMWSGRWHLCQAAVEAVFRGEPVTPLSSESA--- 117
           LRPAIF SLLYEACGRIVNPIYGSVGL+WSG WHLCQAAVEAV +GEP+T ++SE+A   
Sbjct: 61  LRPAIFSSLLYEACGRIVNPIYGSVGLLWSGSWHLCQAAVEAVLKGEPITQITSEAAATG 120

Query: 118 ----LQAGDIRHVSKDESSAAAAAVSDKLHKVKSR-RFKRSAPKPRSKPERAADA----- 167
               L+A DIRHVSKDE+SAA     + LH+ K+R RFKRS  + +S  +   ++     
Sbjct: 121 QGPPLKAYDIRHVSKDENSAA-----NDLHRAKNRCRFKRSGVRAKSGNKAGTNSVAESK 175

Query: 168 ------KVVEPLLDNSGGESTSCDPELTQRDSGEG----DSVSVETVEATL 208
                  + + L  ++  +ST   P       GE       VSVET E + 
Sbjct: 176 QGMNRGSLADELNRSTSHDSTVSHPSEPHTVEGESRETVSMVSVETAEPSF 226

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509766|gb|AFK42949.1| unknown [Medicago truncatula]

 Score =  249 bits (637), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 134/252 (53%), Positives = 173/252 (68%), Gaps = 26/252 (10%)

Query: 1   MRVSCNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQD 60
           MR+SCNGCRVLRKGC ENCSIRPCLQWIKSP+ QANAT+FLAKFYGRAGL+NL+NAGP+ 
Sbjct: 1   MRMSCNGCRVLRKGCSENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLVNAGPEH 60

Query: 61  LRPAIFKSLLYEACGRIVNPIYGSVGLMWSGRWHLCQAAVEAVFRGEPVTPLSSESA--- 117
           LRPAIF+SLLYEACGRIVNPIYGSVGL+WSG W LCQA VEAV +G P+TP++SE+A   
Sbjct: 61  LRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQATVEAVLKGAPITPITSEAAANG 120

Query: 118 ----LQAGDIRHVSKDESSAAAAAVSDKLHKVKSRRFKRSA---PKPRSKPERAADAKVV 170
               L+A DIRHVSK+E+SAA+  ++ +  +VK R  KRS+    K + + + + D K V
Sbjct: 121 RGPPLKAYDIRHVSKEENSAASTELTQQ--RVKPRSRKRSSLAKLKIQEEEKSSNDNKGV 178

Query: 171 EPLLDNSGGESTSCDPELTQRDSGEGDSVSVETVEATLAKTD-------------GGADG 217
           E +++ S    +S   +       +G+S   E+  + +   D              G +G
Sbjct: 179 EEVMNRSVSHESSISHQSEAVAVVDGESKDSESETSMILFRDEPELDRKMKPADRTGENG 238

Query: 218 SD-VDLELSLGF 228
            + V LEL+LG 
Sbjct: 239 EEKVGLELTLGL 250

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118826|ref|XP_002317916.1| predicted protein [Populus trichocarpa] gi|222858589|gb|EEE96136.1| predicted protein [Populus trichocarpa]

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 139/237 (58%), Positives = 170/237 (71%), Gaps = 18/237 (7%)

Query: 1   MRVSCNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQD 60
           MR+SCNGCR+LRKGCG+NCSI+PCLQWI++P  QANATLFLAKFYGRAGL+NLINA PQ 
Sbjct: 1   MRMSCNGCRILRKGCGDNCSIKPCLQWIETPDSQANATLFLAKFYGRAGLMNLINACPQH 60

Query: 61  LRPAIFKSLLYEACGRIVNPIYGSVGLMWSGRWHLCQAAVEAVFRGEPVTPLSSESALQA 120
           LRP  FKSLLYEACGRIVNP+ GSVGL+ +G W  CQAAVEAV +GEP+T ++S   L  
Sbjct: 61  LRPDTFKSLLYEACGRIVNPVSGSVGLLSTGSWQQCQAAVEAVLKGEPITQIASTDQLTL 120

Query: 121 G--DIRHVSKDESSAAAAAVSDKLHKVKSRR-FKRSAPKPRSKPERA-ADAKVVEPLLDN 176
           G  D RHVS++E  +A    SD+  K+KS+R F RS  K   KP R  A+    E ++  
Sbjct: 121 GGSDTRHVSREEDWSA----SDQPRKIKSKRQFNRSTSK--RKPSRTEAEHTCFEFMIGF 174

Query: 177 SGGESTSCDPELTQR-----DSGEGDSV-SVETVEATLAKTDGGADGSDVDLELSLG 227
            G  S S D  L+ R     D+ E DS+ SVETVEA  +K D  A+GSD+DL+L+LG
Sbjct: 175 DGLRSVSPDSVLSWRPSLGSDNEETDSIGSVETVEA--SKLDEPAEGSDLDLDLTLG 229

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	230
TAIR|locus:2076829	263	LBD41 "LOB domain-containing p	0.943	0.825	0.527	1.8e-55
TAIR|locus:2019698	233	LBD40 "AT1G67100" [Arabidopsis	0.565	0.557	0.757	1.9e-53
TAIR|locus:2201267	233	LBD42 "AT1G68510" [Arabidopsis	0.669	0.660	0.615	1.4e-48
TAIR|locus:2083063	247	LBD38 "LOB domain-containing p	0.478	0.445	0.636	2.9e-39
TAIR|locus:2158247	250	LBD37 "LOB domain-containing p	0.478	0.44	0.609	2.6e-38
TAIR|locus:2120071	240	LBD39 "AT4G37540" [Arabidopsis	0.482	0.462	0.612	1.1e-37
TAIR|locus:2046817	311	LBD10 "LOB domain-containing p	0.343	0.254	0.333	6.9e-07
TAIR|locus:2026611	190	LBD1 "LOB domain-containing pr	0.347	0.421	0.282	3.3e-05
TAIR|locus:2090852	121	LBD23 "LOB domain-containing p	0.343	0.652	0.285	6.3e-05
TAIR|locus:2090812	121	LBD24 "LOB domain-containing p	0.343	0.652	0.285	6.3e-05

TAIR|locus:2076829 LBD41 "LOB domain-containing protein 41" [Arabidopsis thaliana (taxid:3702)]

 Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
 Identities = 124/235 (52%), Positives = 153/235 (65%)

Query:     1 MRVSCNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQD 60
             MR+SCNGCRVLRKGC E+CSIRPCL WIKSP+ QANAT+FLAKFYGRAGL+NLINAGP  
Sbjct:     1 MRMSCNGCRVLRKGCSEDCSIRPCLAWIKSPEAQANATVFLAKFYGRAGLMNLINAGPNH 60

Query:    61 LRPAIFKSLLYEACGRIVNPIYGSVGLMWSGRWHLCQAAVEAVFRGEPVTPLSSESA--- 117
             LRP IF+SLL+EACGRIVNPIYGSVGL+WSG W LCQ AVEAV +GEPV  +++++A   
Sbjct:    61 LRPGIFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQDAVEAVMKGEPVKEIATDAATIG 120

Query:   118 ----LQAGDIRHVSKDEXXXXXXXVSDKLHKVKSRRFKR-SAPKPRSKPERAADAKVVEP 172
                 L+  DIRH+SKD+        S  L   K+RR KR S    +++ E  +D      
Sbjct:   121 QGPPLKIYDIRHISKDDNSAAAATGSTDLKLAKTRRAKRVSTVAIQAESEGKSD------ 174

Query:   173 LLDNSGGESTSCDPELTQRDSGEGDSVSVETVEATLAKTDGGADGS-DVDLELSL 226
               + S   S S   E+     GE    S   V   LA +     GS ++ L+L+L
Sbjct:   175 --EASHDSSLSHQSEIVAAHEGESKE-SESNVSEVLAFSPPAVKGSGEIKLDLTL 226

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

GO:0001666 "response to hypoxia" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

TAIR|locus:2019698 LBD40 "AT1G67100" [Arabidopsis thaliana (taxid:3702)]

 Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
 Identities = 106/140 (75%), Positives = 119/140 (85%)

Query:     1 MRVSCNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQD 60
             MR+SCNGCRVLRKGC ENCSIRPCLQWIKS + QANAT+FLAKFYGRAGL+NL+N GP  
Sbjct:     1 MRMSCNGCRVLRKGCSENCSIRPCLQWIKSAESQANATVFLAKFYGRAGLMNLLNTGPDH 60

Query:    61 LRPAIFKSLLYEACGRIVNPIYGSVGLMWSGRWHLCQAAVEAVFRGEPVTPLSSESAL-- 118
             LRPAIF+SLLYEACGRIVNPIYGSVGL+WSG WHLCQAAVEAV RG PVTP++ ++A+  
Sbjct:    61 LRPAIFRSLLYEACGRIVNPIYGSVGLLWSGNWHLCQAAVEAVMRGSPVTPIACDAAVTG 120

Query:   119 QAG-------DIRHVS-KDE 130
             QA        DIRHVS +DE
Sbjct:   121 QAPPFNNKLCDIRHVSSRDE 140

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

TAIR|locus:2201267 LBD42 "AT1G68510" [Arabidopsis thaliana (taxid:3702)]

 Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
 Identities = 104/169 (61%), Positives = 123/169 (72%)

Query:     1 MRVSCNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQD 60
             MR+SCNGCRVLRKGC ++C+IRPCLQWIKS   QANATLFLAKFYGRAGL+NLI +GP  
Sbjct:     1 MRISCNGCRVLRKGCNQDCTIRPCLQWIKSADSQANATLFLAKFYGRAGLLNLIESGPDH 60

Query:    61 LRPAIFKSLLYEACGRIVNPIYGSVGLMWSGRWHLCQAAVEAVFRGEPVT--PLSSESAL 118
             LRPAIF+SLLYEACGRIVNP+ GSVGLMWSG W  CQAAV+AV  G P+T  PL S SA 
Sbjct:    61 LRPAIFRSLLYEACGRIVNPVDGSVGLMWSGNWAQCQAAVDAVLNGLPITHTPLPSASAS 120

Query:   119 -------QAGDIRHVSKDEXXXXXXX--VSDKLHKVKSR----RFKRSA 154
                    +  DIRHV+KD          ++ +++  KS+    RFKR +
Sbjct:   121 HQIIPPHRTYDIRHVAKDPTTGGDSSENLATRVNANKSKTQTGRFKRES 169

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2083063 LBD38 "LOB domain-containing protein 38" [Arabidopsis thaliana (taxid:3702)]

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 70/110 (63%), Positives = 93/110 (84%)

Query:     3 VSCNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLR 62
             +SCNGCRVLRKGC ENC +RPC+QWI+SP+ Q +AT+F+AKF+GRAGL++ I+A P+   
Sbjct:     1 MSCNGCRVLRKGCSENCILRPCIQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPESQC 60

Query:    63 PAIFKSLLYEACGRIVNPIYGSVGLMWSGRWHLCQAAVEAVFRGEPVTPL 112
             PA+F+SLLYEACGR VNP+ G+VGL+W+G W++CQAAVE V RG  + P+
Sbjct:    61 PALFQSLLYEACGRTVNPVNGAVGLLWTGNWNVCQAAVETVLRGGSLKPI 110

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2158247 LBD37 "LOB domain-containing protein 37" [Arabidopsis thaliana (taxid:3702)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 67/110 (60%), Positives = 91/110 (82%)

Query:     3 VSCNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLR 62
             +SCNGCRVLRKGC ENC +RPC+QWI++   Q +AT+F+AKF+GRAGL++ I+A P   R
Sbjct:     1 MSCNGCRVLRKGCSENCILRPCIQWIETADAQGHATVFVAKFFGRAGLMSFISAVPDSQR 60

Query:    63 PAIFKSLLYEACGRIVNPIYGSVGLMWSGRWHLCQAAVEAVFRGEPVTPL 112
             PA+F+SLLYEACGR VNP+ G++G++W+G W++CQAAVE V RG  + P+
Sbjct:    61 PALFQSLLYEACGRTVNPVNGAIGMLWTGNWNICQAAVETVLRGGSLRPI 110

GO:0005634 "nucleus" evidence=ISM

GO:0006807 "nitrogen compound metabolic process" evidence=IMP

GO:0060776 "simple leaf morphogenesis" evidence=IMP

TAIR|locus:2120071 LBD39 "AT4G37540" [Arabidopsis thaliana (taxid:3702)]

 Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
 Identities = 68/111 (61%), Positives = 92/111 (82%)

Query:     3 VSCNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLR 62
             +SCNGCRVLRKGC E C +RPCLQWI+S + Q +AT+F+AKF+GRAGL++ I++ P+  R
Sbjct:     1 MSCNGCRVLRKGCSETCILRPCLQWIESAESQGHATVFVAKFFGRAGLMSFISSVPELQR 60

Query:    63 PAIFKSLLYEACGRIVNPIYGSVGLMWSGRWHLCQAAVEAVFRGEPVTPLS 113
             PA+F+SLL+EACGR VNP+ G+VG++W+  WH+CQAAVE V RG  + P+S
Sbjct:    61 PALFQSLLFEACGRTVNPVNGAVGMLWTRNWHVCQAAVETVLRGGTLRPIS 111

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016126 "sterol biosynthetic process" evidence=RCA

TAIR|locus:2046817 LBD10 "LOB domain-containing protein 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 129 (50.5 bits), Expect = 6.9e-07, Sum P(2) = 6.9e-07
 Identities = 28/84 (33%), Positives = 42/84 (50%)

Query:     5 CNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLRPA 64
             C  C++LR+ C + C   P       P       +F+ + +G + +  ++N  P D R  
Sbjct:     6 CAACKLLRRKCTQECVFAPYF-----PPTNPQKFIFVHRVFGASNVTKILNDLPPDQRED 60

Query:    65 IFKSLLYEACGRIVNPIYGSVGLM 88
                SL YEA  RI +PIYG VGL+
Sbjct:    61 TVNSLFYEAEARIRDPIYGCVGLI 84

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2026611 LBD1 "LOB domain-containing protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 3.3e-05, P = 3.3e-05
 Identities = 24/85 (28%), Positives = 42/85 (49%)

Query:     5 CNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLRPA 64
             C  C++LR+ C E C + P       P   A  T+   + +G + ++  +   P+  R  
Sbjct:    34 CAACKILRRRCAERCVLAPYFP----PTDPAKFTI-AHRVFGASNIIKFLQELPESQRTD 88

Query:    65 IFKSLLYEACGRIVNPIYGSVGLMW 89
                S++YEA  RI +P+YG  G ++
Sbjct:    89 AVNSMVYEAEARIRDPVYGCAGAIY 113

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2090852 LBD23 "LOB domain-containing protein 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 99 (39.9 bits), Expect = 6.3e-05, P = 6.3e-05
 Identities = 24/84 (28%), Positives = 40/84 (47%)

Query:     5 CNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLRPA 64
             C  C+ LR+ C ++C   P       PQ  A     + + YG   +  ++   P   R  
Sbjct:     6 CAACKYLRRRCPKDCVFSPYFP-PNDPQKFA----CVHRIYGAGNVSKMLQQLPDQTRAE 60

Query:    65 IFKSLLYEACGRIVNPIYGSVGLM 88
               +SL +EA  R+ +P+YG VG++
Sbjct:    61 AVESLCFEAKCRVDDPVYGCVGII 84

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2090812 LBD24 "LOB domain-containing protein 24" [Arabidopsis thaliana (taxid:3702)]

 Score = 99 (39.9 bits), Expect = 6.3e-05, P = 6.3e-05
 Identities = 24/84 (28%), Positives = 40/84 (47%)

Query:     5 CNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLRPA 64
             C  C+ LR+ C ++C   P       PQ  A     + + YG   +  ++   P   R  
Sbjct:     6 CAACKYLRRRCPKDCVFSPYFP-PNDPQKFA----CVHRIYGAGNVSKMLQQLPDQTRAE 60

Query:    65 IFKSLLYEACGRIVNPIYGSVGLM 88
               +SL +EA  R+ +P+YG VG++
Sbjct:    61 AVESLCFEAKCRVDDPVYGCVGII 84

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M886	LBD41_ARATH	No assigned EC number	0.5489	0.9434	0.8250	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00017674001 SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (272 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	230
pfam03195	101	pfam03195, DUF260, Protein of unknown function DUF	4e-35

>gnl|CDD|190559 pfam03195, DUF260, Protein of unknown function DUF260

 Score =  119 bits (302), Expect = 4e-35
 Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 5/105 (4%)

Query: 4   SCNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLRP 63
            C  C+ LR+ C  +C + P       P  Q      + K +G + +  L+ A P + R 
Sbjct: 1   PCAACKHLRRKCPPDCVLAPYF-----PAEQPARFANVHKLFGASNVTKLLKALPPEQRD 55

Query: 64  AIFKSLLYEACGRIVNPIYGSVGLMWSGRWHLCQAAVEAVFRGEP 108
              +SLLYEA  R  +P+YG VG++WS +  L Q   E       
Sbjct: 56  DAMRSLLYEADARARDPVYGCVGVIWSLQQQLEQLQAELALVKAQ 100

Length = 101

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	230
PF03195	101	DUF260: Protein of unknown function DUF260; InterP	100.0

>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function

Probab=100.00  E-value=4.7e-46  Score=292.12  Aligned_cols=101  Identities=26%  Similarity=0.538  Sum_probs=94.8

Q ss_pred             CChhhhhccCCCCCCCccccCCCCCCCchhhhhHHHHHHHHhccccHHHHHHcCCCCChHHHHHHhHHhhcccccCCCCc
Q 038007            4 SCNGCRVLRKGCGENCSIRPCLQWIKSPQCQANATLFLAKFYGRAGLVNLINAGPQDLRPAIFKSLLYEACGRIVNPIYG   83 (230)
Q Consensus         4 ~CAACK~lRRrC~~dCilAPYFP~~~~pe~qana~~fvhKvFG~sNv~klL~~lp~~~R~~a~~SLvYEA~aR~~DPVyG   83 (230)
                      +|||||||||+|+++|+||||||     ..+.+.|.+||||||++||+|||+++|+++|+++|+||+|||++|.+|||||
T Consensus         1 ~CaaCk~lRr~C~~~C~laPyFP-----~~~~~~F~~vhkvFG~sni~k~L~~~~~~~R~~a~~Sl~yEA~~R~~dPv~G   75 (101)
T PF03195_consen    1 PCAACKHLRRRCSPDCVLAPYFP-----ADQPQRFANVHKVFGVSNISKMLQELPPEQREDAMRSLVYEANARARDPVYG   75 (101)
T ss_pred             CChHHHHHhCCCCCCCcCCCCCC-----hhHHHHHHHHHHHHchhHHHHHHHhCCccchhhHHHHHHHHHHhhccCCCcc
Confidence            79999999999999999999999     3445677889999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhHHHHHHHHHHHHcCCCC
Q 038007           84 SVGLMWSGRWHLCQAAVEAVFRGEPV  109 (230)
Q Consensus        84 cvGiI~~Lq~Ql~q~avEavl~g~~i  109 (230)
                      |+|+||.|||||++.++|+++.+..|
T Consensus        76 c~G~i~~L~~ql~~~~~el~~~~~~l  101 (101)
T PF03195_consen   76 CVGIISQLQQQLQQLQAELALVRAQL  101 (101)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            99999999999999999999877654

The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	230
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 3e-04
 Identities = 34/224 (15%), Positives = 69/224 (30%), Gaps = 62/224 (27%)

Query: 20  SIRPCLQWIKSP-QCQANATLFLAKFYGRAGLVNLINAGPQDL------RPAIFKSL--- 69
            +R   +++ SP + +      + + Y      + +    Q        R   +  L   
Sbjct: 86  VLRINYKFLMSPIKTEQRQPSMMTRMYIEQ--RDRLYNDNQVFAKYNVSRLQPYLKLRQA 143

Query: 70  LYEA--CGRIVNPIYGSVGLMWSGRWHLCQAAVEAVFRGEPVTP--------LSSESALQ 119
           L E      ++  I G +G   SG+  +   A++       V          L+ ++   
Sbjct: 144 LLELRPAKNVL--IDGVLG---SGKTWV---ALDVC-LSYKVQCKMDFKIFWLNLKNCNS 194

Query: 120 AGDI--------RHVSKDESSAAAAAVSDKLH----KVKSRRFKRSAPKPRS-------K 160
              +          +  + +S +  + + KL     + + RR  +S P           +
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254

Query: 161 PERAADAKVVEPLLDNSGGESTSCDPELTQRDSGEGDSVSVETV 204
                +AK      + S      C   LT R     D +S  T 
Sbjct: 255 -----NAKAWNAF-NLS------CKILLTTRFKQVTDFLSAATT 286

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00