Citrus Sinensis ID: 038029

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-
Protein Sequence
MSMVVTVRCGHCTSLLSVNMMKASFVPLHLLASFSHDDEPKEEFRKEEVQADQKAFKRFSPSILTSSDNEEEDTGSVINHVVSKPPEKRQRAPSAYNRFIK
Secondary Structure (PSIPRED)
cccEEEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHcccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEcccccccEEcccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccHHHHHcc
Coil and Loop (DISEMBL)
MSMVVTVRCGHCTSLLSVNMMKASFVPLhllasfshddepkeeFRKEEVQADQKAfkrfspsiltssdneeedtgsvinhvvskppekrqrapsaynrfik
Flexible Loop (DISEMBL)
MSMVVTVRCGHCTSLLSVNMMKASFVPLHLLASFSHDDEPKEEFRKEEVqadqkafkrfspsiltssdneeedtgsvinhvvskppekrqrapsaynrfik
Low Complexity Region (SEG)
MSMVVTVRCGHCTSLLSVNMMKASFVPLHLLASFSHDDEPKEEFRKEEVQADQKAFKRFSPSILTSSDNEEEDTGSVINHVVSKPPEKRQRAPSAYNRFIK
Disordered region (IsUnstruct)
***VVTVRCGHCTSLLSVNMMKASFVPLHLLASF*******************************************************************
Disordered Region (DISOPRED)
MSMVVTVRCGHCTSLLSVNMMKAS************************************************************************NRFIK
Disordered Region (DISEMBL)
********CGHCTSLLSVNMMKASFVPLHLLASFSHD***************QKAFKRFSPSIL***********SVINHVVSK*****************
Disordered Region (DISPRO)
MSMVVTVRCGHCTSLLSVNMMKASFVPLHLLASF********************************************NHVVSKP**KRQRAPSAYNR*IK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSMVVTVRCGHCTSLLSVNMMKASFVPLHLLASFSHDDEPKEEFRKEEVQADQKAFKRFSPSILTSSDNEEEDTGSVINHVVSKPPEKRQRAPSAYNRFIK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	101	2.2.26 [Sep-21-2011]
Q9LDT3	231	Axial regulator YABBY 4 O	yes	no	0.950	0.415	0.639	5e-22
Q8GW46	164	Axial regulator YABBY 5 O	no	no	0.821	0.506	0.387	4e-11
Q10FZ7	186	Protein YABBY 2 OS=Oryza	yes	no	0.871	0.473	0.377	4e-10
Q9XFB0	184	Putative axial regulator	no	no	0.861	0.472	0.392	7e-09
Q2QM17	207	Protein YABBY 6 OS=Oryza	no	no	0.940	0.458	0.318	6e-08
O22152	229	Axial regulator YABBY 1 O	no	no	0.920	0.406	0.381	6e-07
Q7XIM7	169	Protein YABBY 1 OS=Oryza	no	no	0.871	0.520	0.346	9e-07
Q76EJ0	194	Protein DROOPING LEAF OS=	no	no	0.831	0.432	0.367	1e-05
Q6H668	256	Protein YABBY 4 OS=Oryza	no	no	0.970	0.382	0.296	3e-05
A2X7Q3	256	Protein YABBY 4 OS=Oryza	N/A	no	0.970	0.382	0.296	3e-05

>sp|Q9LDT3|YAB4_ARATH Axial regulator YABBY 4 OS=Arabidopsis thaliana GN=YAB4 PE=1 SV=2

 Score =  102 bits (255), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 71/111 (63%), Positives = 82/111 (73%), Gaps = 15/111 (13%)

Query: 1   MSMVVTVRCGHCTSLLSVNMMKASFVPLHLLASFSHDDEPKEEFRKEEVQA----DQKAF 56
           +SMVVTVRCGHCTSLLSVN+MKASF+PLHLLAS SH DE      KEEV A    +++A+
Sbjct: 42  LSMVVTVRCGHCTSLLSVNLMKASFIPLHLLASLSHLDETG----KEEVAATDGVEEEAW 97

Query: 57  -----KRFSPSIL-TSSDNEEEDTGSVINHVVSKPPEKRQRAPSAYNRFIK 101
                K  SP+ L +SSDNE+ED   V   VV+KPPEKRQRAPSAYN FIK
Sbjct: 98  KVNQEKENSPTTLVSSSDNEDEDVSRVY-QVVNKPPEKRQRAPSAYNCFIK 147

Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8GW46|YAB5_ARATH Axial regulator YABBY 5 OS=Arabidopsis thaliana GN=YAB5 PE=2 SV=1

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 38/98 (38%), Positives = 52/98 (53%), Gaps = 15/98 (15%)

Query: 4   VVTVRCGHCTSLLSVNMMKASFVPLHLLASFSHDDEPKEEFRKEEVQADQKAFKRFSPSI 63
           +VTVRCGHCT+L SVNM  A       L S S  +     +   E  +  ++  +    I
Sbjct: 35  IVTVRCGHCTNLWSVNMAAA-------LQSLSRPNFQATNYAVPEYGSSSRSHTKIPSRI 87

Query: 64  LTSSDNEEEDTGSVINHVVSKPPEKRQRAPSAYNRFIK 101
            T +  E+         +V++PPEKRQR PSAYN+FIK
Sbjct: 88  STRTITEQR--------IVNRPPEKRQRVPSAYNQFIK 117

Arabidopsis thaliana (taxid: 3702)

>sp|Q10FZ7|YAB2_ORYSJ Protein YABBY 2 OS=Oryza sativa subsp. japonica GN=YAB2 PE=2 SV=1

 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 55/106 (51%), Gaps = 18/106 (16%)

Query: 1   MSMVVTVRCGHCTSLLSVNMMKASFVPLHLLASFSHDDEPKEEFRKE-----EVQADQKA 55
           M  +VTVRCGHCTSLLSVN+         L+ +   +D  ++  +       E  ++  +
Sbjct: 33  MLNIVTVRCGHCTSLLSVNLRG-------LVQALPAEDHLQDNLKMHNMSFRENYSEYGS 85

Query: 56  FKRFSPSILTSSDNEEEDTGSVINHVVSKPPEKRQRAPSAYNRFIK 101
             R+    +  S N+ E    V      +PPEKRQR PSAYNRFIK
Sbjct: 86  SSRYGRVPMMFSKNDTEHMLHV------RPPEKRQRVPSAYNRFIK 125

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9XFB0|YAB2_ARATH Putative axial regulator YABBY 2 OS=Arabidopsis thaliana GN=YAB2 PE=2 SV=1

 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 53/102 (51%), Gaps = 15/102 (14%)

Query: 4   VVTVRCGHCTSLLSVN----MMKASFVPLHLLASFSHDDEPKEEFRKEEVQADQKAFKRF 59
           +VTVRCGHCT+LLS+N    + + S  P+H       D +P  +     V     A    
Sbjct: 34  LVTVRCGHCTNLLSLNIGVSLHQTSAPPIH------QDLQPHRQHTTSLVTRKDCASSSR 87

Query: 60  SPSILTSSDNEEEDTGSVINHVVSKPPEKRQRAPSAYNRFIK 101
           S + L+ + + E      I     +PPEKRQR PSAYNRFIK
Sbjct: 88  STNNLSENIDREAPRMPPI-----RPPEKRQRVPSAYNRFIK 124

Involved in the abaxial cell fate determination during embryogenesis and organogenesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q2QM17|YAB6_ORYSJ Protein YABBY 6 OS=Oryza sativa subsp. japonica GN=YAB6 PE=2 SV=1

 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 53/116 (45%), Gaps = 21/116 (18%)

Query: 1   MSMVVTVRCGHCTSLLSVNMMKASFVPLHLLASFSHDDEPKEEFRKEEVQA---DQKAFK 57
           M  +VTVRCGHCT+LLSVN+       +H   +    D      ++  +     DQ  + 
Sbjct: 32  MLNIVTVRCGHCTNLLSVNLRGL----MHSAPAL--QDHHHHHLQESGLSGCFRDQSGYP 85

Query: 58  RFS------------PSILTSSDNEEEDTGSVINHVVSKPPEKRQRAPSAYNRFIK 101
            F             P    +  +  +    +   + ++PPEKRQR PSAYNRFIK
Sbjct: 86  EFGFSAASSSSKLRLPPAAAAMVSYSQQNQQLEQALHARPPEKRQRVPSAYNRFIK 141

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O22152|YAB1_ARATH Axial regulator YABBY 1 OS=Arabidopsis thaliana GN=YAB1 PE=1 SV=1

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 54/110 (49%), Gaps = 17/110 (15%)

Query: 4   VVTVRCGHCTSLLSVNMMKASFVP------LHLLA-SFSHDDEPKEEFR-----KEEVQA 51
            VTVRCG CT+LLSVNM ++  +P      L L   S+ +  +  EE R        +  
Sbjct: 49  TVTVRCGCCTNLLSVNM-RSYVLPASNQLQLQLGPHSYFNPQDILEELRDAPSNMNMMMM 107

Query: 52  DQKAFKRFSPSILTSSDNEEEDTGSVINHVVSKPPEKRQRAPSAYNRFIK 101
           +Q       PS +      E      +N    +PPEKRQR PSAYNRFIK
Sbjct: 108 NQHPTMNDIPSFMDLHQQHEIPKAPPVN----RPPEKRQRVPSAYNRFIK 153

Involved in the abaxial cell fate determination during embryogenesis and organogenesis. Required during flower formation and development, particularly for the patterning of floral organs. Positive regulator of class B (AP3 and PI) activity in whorls 2 and 3. Negative regulator of class B activity in whorl 1 and of SUP activity in whorl 3. Interacts with class A proteins (AP1, AP2 and LUG) to repress class C (AG) activity in whorls 1 and 2. Contributes to the repression of KNOX genes (STM, KNAT1/BP and KNAT2) to avoid ectopic meristems. Binds DNA without sequence specificity. In vitro, can compete and displace the AP1 protein binding to DNA containing CArG box.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XIM7|YAB1_ORYSJ Protein YABBY 1 OS=Oryza sativa subsp. japonica GN=YAB1 PE=2 SV=1

 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 45/98 (45%), Gaps = 10/98 (10%)

Query: 4   VVTVRCGHCTSLLSVNMMKASFVPLHLLASFSHDDEPKEEFRKEEVQADQKAFKRFSPSI 63
           +VTVRCGHCT +LS+++      P H   +          F+     +   A +    S 
Sbjct: 34  IVTVRCGHCTMVLSMDL-----APFHQARTVQDHQVQNRGFQGNNFGSYDIASRNQRTST 88

Query: 64  LTSSDNEEEDTGSVINHVVSKPPEKRQRAPSAYNRFIK 101
                   +   S I     +PPEKRQR PSAYNRFIK
Sbjct: 89  AMYPMPTSQQQVSPI-----RPPEKRQRVPSAYNRFIK 121

May play a role in floral meristem development and maintenance of stamens, rather than in determining polarity in floral organs.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q76EJ0|YABDL_ORYSJ Protein DROOPING LEAF OS=Oryza sativa subsp. japonica GN=DL PE=1 SV=1

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 45/98 (45%), Gaps = 14/98 (14%)

Query: 4   VVTVRCGHCTSLLSVNMMKASFVPLHLLASFSHDDEPKEEFRKEEVQADQKAFKRFSPSI 63
            VTV+CGHC +L  ++       PL      S  D P   F     Q      +R  P  
Sbjct: 34  TVTVKCGHCNNLSFLSPRPPMVQPL------SPTDHPLGPF-----QGPCTDCRRNQPLP 82

Query: 64  LTSSDNEEEDTGSVINHVVSKPPEKRQRAPSAYNRFIK 101
           L S  + E   GS     V KPPEK+ R PSAYNRF++
Sbjct: 83  LVSPTSNE---GSPRAPFVVKPPEKKHRLPSAYNRFMR 117

Regulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6H668|YAB4_ORYSJ Protein YABBY 4 OS=Oryza sativa subsp. japonica GN=YAB4 PE=2 SV=1

 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 52/128 (40%), Gaps = 30/128 (23%)

Query: 4   VVTVRCGHCTSLLSVNMMKAS-------------FVPLHLLASFSHDDEPKEEFRKEEVQ 50
            VTVRCGHC +LLSVN+                 F P  L  +  H    +  F+   + 
Sbjct: 49  TVTVRCGHCANLLSVNLRGLLLPAPAPAPANQLHFGPSLLSPTSPHGLLDEVAFQTPSLL 108

Query: 51  ADQKAFKRF--------------SPSILTSSD---NEEEDTGSVINHVVSKPPEKRQRAP 93
            +Q A                  +P++         +E +         ++PPEKRQR P
Sbjct: 109 MEQAASASLSSITGRSSSSCASNAPAMQMPPAKPVQQEPELPKNAPASANRPPEKRQRVP 168

Query: 94  SAYNRFIK 101
           SAYNRFIK
Sbjct: 169 SAYNRFIK 176

Seems to be associated with phloem cell differentiation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2X7Q3|YAB4_ORYSI Protein YABBY 4 OS=Oryza sativa subsp. indica GN=YAB4 PE=2 SV=1

 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 52/128 (40%), Gaps = 30/128 (23%)

Query: 4   VVTVRCGHCTSLLSVNMMKAS-------------FVPLHLLASFSHDDEPKEEFRKEEVQ 50
            VTVRCGHC +LLSVN+                 F P  L  +  H    +  F+   + 
Sbjct: 49  TVTVRCGHCANLLSVNLRGLLLPAPAPAPANQLHFGPSLLSPTSPHGLLDEVAFQTPSLL 108

Query: 51  ADQKAFKRF--------------SPSILTSSD---NEEEDTGSVINHVVSKPPEKRQRAP 93
            +Q A                  +P++         +E +         ++PPEKRQR P
Sbjct: 109 MEQAASASLSSITGRSSSSCASNAPAMQMPPAKPVQQEPELPKNAPASANRPPEKRQRVP 168

Query: 94  SAYNRFIK 101
           SAYNRFIK
Sbjct: 169 SAYNRFIK 176

Oryza sativa subsp. indica (taxid: 39946)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
297739071	176	unnamed protein product [Vitis vinifera]	0.960	0.551	0.732	1e-30
359473237	199	PREDICTED: axial regulator YABBY 4-like	0.960	0.487	0.712	6e-29
356515722	217	PREDICTED: axial regulator YABBY 4-like	0.960	0.447	0.633	5e-26
356497753	222	PREDICTED: axial regulator YABBY 4-like	0.960	0.436	0.603	1e-24
357485843	217	Axial regulator YABBY [Medicago truncatu	0.930	0.433	0.609	1e-24
55739898	126	inner no outer [Impatiens sodenii]	0.960	0.769	0.611	3e-24
48375195	205	inner no outer [Impatiens niamniamensis]	0.980	0.482	0.615	3e-24
356524040	218	PREDICTED: axial regulator YABBY 4-like	0.970	0.449	0.584	4e-23
224107813	216	predicted protein [Populus trichocarpa]	0.980	0.458	0.594	1e-22
356565974	216	PREDICTED: axial regulator YABBY 4-like	0.950	0.444	0.594	1e-22

>gi|297739071|emb|CBI28560.3| unnamed protein product [Vitis vinifera]

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 74/101 (73%), Positives = 81/101 (80%), Gaps = 4/101 (3%)

Query: 1   MSMVVTVRCGHCTSLLSVNMMKASFVPLHLLASFSHDDEPKEEFRKEEVQADQKAFKRFS 60
           +SMVVTVRCGHC SLLSVNMMKASFVPLHLLAS S  DEPKE    EE    QKA  + S
Sbjct: 35  LSMVVTVRCGHCASLLSVNMMKASFVPLHLLASLSQ-DEPKEGCPNEE--GAQKASDKRS 91

Query: 61  PSILTSSDNEEEDTGSVINHVVSKPPEKRQRAPSAYNRFIK 101
           PS++ SSDNEE+D   V +HVV+KPPEKRQRAPSAYNRFIK
Sbjct: 92  PSMVASSDNEEDDIVPV-HHVVNKPPEKRQRAPSAYNRFIK 131

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473237|ref|XP_002265385.2| PREDICTED: axial regulator YABBY 4-like [Vitis vinifera]

 Score =  131 bits (329), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 72/101 (71%), Positives = 79/101 (78%), Gaps = 4/101 (3%)

Query: 1   MSMVVTVRCGHCTSLLSVNMMKASFVPLHLLASFSHDDEPKEEFRKEEVQADQKAFKRFS 60
           +SMVVTVRCGHC SLLSVNMMKASFVPLHLLAS S  DE  E    EE    QKA  + S
Sbjct: 35  LSMVVTVRCGHCASLLSVNMMKASFVPLHLLASLSQ-DEVGEGCPNEE--GAQKASDKRS 91

Query: 61  PSILTSSDNEEEDTGSVINHVVSKPPEKRQRAPSAYNRFIK 101
           PS++ SSDNEE+D   V +HVV+KPPEKRQRAPSAYNRFIK
Sbjct: 92  PSMVASSDNEEDDIVPV-HHVVNKPPEKRQRAPSAYNRFIK 131

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515722|ref|XP_003526547.1| PREDICTED: axial regulator YABBY 4-like [Glycine max]

 Score =  121 bits (304), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 64/101 (63%), Positives = 75/101 (74%), Gaps = 4/101 (3%)

Query: 1   MSMVVTVRCGHCTSLLSVNMMKASFVPLHLLASFSHDDEPKEEFRKEEVQADQKAFKRFS 60
           +SMVVTVRCGHCT+LLSVNM+KASF+P HLLAS SH  EPKE   +E+     K     S
Sbjct: 35  LSMVVTVRCGHCTNLLSVNMLKASFIPFHLLASLSH-LEPKESSPEEDA---NKTLNSHS 90

Query: 61  PSILTSSDNEEEDTGSVINHVVSKPPEKRQRAPSAYNRFIK 101
            S++T SD EEED   + +HVV+KPPEKRQR PSAYN FIK
Sbjct: 91  ASMMTYSDCEEEDIIPMSHHVVNKPPEKRQRTPSAYNCFIK 131

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497753|ref|XP_003517723.1| PREDICTED: axial regulator YABBY 4-like [Glycine max]

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 64/106 (60%), Positives = 77/106 (72%), Gaps = 9/106 (8%)

Query: 1   MSMVVTVRCGHCTSLLSVNMMKASFVPLHLLASFSHDD-----EPKEEFRKEEVQADQKA 55
           +SMVVTV+CGHCTS+LSVNMMKASFVP HLLAS SH +     +PKE   +++     K 
Sbjct: 35  LSMVVTVKCGHCTSVLSVNMMKASFVPFHLLASLSHLETVSTLQPKESSSEQDA---NKT 91

Query: 56  FKRFSPSILTSSDNEEEDTGSVINHVVSKPPEKRQRAPSAYNRFIK 101
            KR + S++T SD EEED   + N VV+KPPEKRQR PSAYN FIK
Sbjct: 92  LKRHNASMMTYSDCEEEDAIPMSN-VVNKPPEKRQRTPSAYNCFIK 136

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357485843|ref|XP_003613209.1| Axial regulator YABBY [Medicago truncatula] gi|355514544|gb|AES96167.1| Axial regulator YABBY [Medicago truncatula]

 Score =  116 bits (291), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 64/105 (60%), Positives = 75/105 (71%), Gaps = 11/105 (10%)

Query: 1   MSMVVTVRCGHCTSLLSVNMMKASFVPLHLLASFSHDDEPKEEFRKEEVQADQKAFKRF- 59
           ++MVVTVRCGHCTSLLSVNMMKASFVP HLLAS +H ++      KE    D+ A K   
Sbjct: 35  LTMVVTVRCGHCTSLLSVNMMKASFVPFHLLASLTHLEQ------KESSSPDEDANKTLN 88

Query: 60  ---SPSILTSSDNEEEDTGSVINHVVSKPPEKRQRAPSAYNRFIK 101
              S S++T SD EE+D   + N VV+KPPEKRQR PSAYNRFIK
Sbjct: 89  SNTSASMMTYSDCEEDDVIPISN-VVNKPPEKRQRTPSAYNRFIK 132

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|55739898|gb|AAT42246.1| inner no outer [Impatiens sodenii]

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 63/103 (61%), Positives = 76/103 (73%), Gaps = 6/103 (5%)

Query: 3   MVVTVRCGHCTSLLSVNMMKASFVPLHLLASFSHDDEPKEEFR----KEEVQADQKAFKR 58
           MVVTVRCGHCTSLLSVNM K++F+PLHLLAS S  DEPK +      KE  + DQ    +
Sbjct: 1   MVVTVRCGHCTSLLSVNMTKSTFLPLHLLASMS-PDEPKFDVSPTVLKEGTENDQNPTDK 59

Query: 59  FSPSILTSSDNEEEDTGSVINHVVSKPPEKRQRAPSAYNRFIK 101
            + S + SSD+E++D    +NHVV+KPPEKRQRAPSAYN FIK
Sbjct: 60  RNSSHIMSSDDEDDDLIP-LNHVVNKPPEKRQRAPSAYNNFIK 101

Source: Impatiens sodenii

Species: Impatiens sodenii

Genus: Impatiens

Family: Balsaminaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|48375195|gb|AAT42250.1| inner no outer [Impatiens niamniamensis]

 Score =  115 bits (288), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 64/104 (61%), Positives = 78/104 (75%), Gaps = 5/104 (4%)

Query: 1   MSMVVTVRCGHCTSLLSVNMMKASFVPLHLLASFSHDDEPKEEFRK---EEVQADQKAFK 57
           +SMVVTVRCGHCTSLLSVNM K++F+PLHLLAS S  DEPK +      +E + DQ    
Sbjct: 17  LSMVVTVRCGHCTSLLSVNMTKSTFLPLHLLASMS-PDEPKFDASPTVLKEGENDQNPTD 75

Query: 58  RFSPSILTSSDNEEEDTGSVINHVVSKPPEKRQRAPSAYNRFIK 101
           + S S + SSD+E++D    +NHVV+KPPEKRQRAPSAYN FIK
Sbjct: 76  KRSSSHIMSSDDEDDDLIP-LNHVVNKPPEKRQRAPSAYNNFIK 118

Source: Impatiens niamniamensis

Species: Impatiens niamniamensis

Genus: Impatiens

Family: Balsaminaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524040|ref|XP_003530641.1| PREDICTED: axial regulator YABBY 4-like [Glycine max]

 Score =  112 bits (279), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 59/101 (58%), Positives = 73/101 (72%), Gaps = 3/101 (2%)

Query: 1   MSMVVTVRCGHCTSLLSVNMMKASFVPLHLLASFSHDDEPKEEFRKEEVQADQKAFKRFS 60
           +S VVTVRCGHCTSLLSVNM KASFVP HLLAS +H  EPKE    +       ++   +
Sbjct: 35  LSTVVTVRCGHCTSLLSVNMKKASFVPFHLLASLTH-LEPKEGASDDGANKSLNSYN--N 91

Query: 61  PSILTSSDNEEEDTGSVINHVVSKPPEKRQRAPSAYNRFIK 101
            SI+T++ + EE+  + I++VV KPPEKRQR PSAYNRFIK
Sbjct: 92  ASIITTNSDCEEENVTQISNVVHKPPEKRQRTPSAYNRFIK 132

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107813|ref|XP_002314610.1| predicted protein [Populus trichocarpa] gi|222863650|gb|EEF00781.1| predicted protein [Populus trichocarpa]

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 60/101 (59%), Positives = 71/101 (70%), Gaps = 2/101 (1%)

Query: 2   SMVVTVRCGHCTSLLSVNMMKASFVPLHLLASFSHDDEPKEEFRKEEVQADQKAFKRFSP 61
           S VVTV CGHC+SLLSVN+ K SF+P +LL S SHD E KE    +EV A QK     S 
Sbjct: 36  STVVTVICGHCSSLLSVNLTKISFLPFNLLTSLSHDQEQKELLSPDEVNA-QKGLDTQSS 94

Query: 62  SILTSSDNEEE-DTGSVINHVVSKPPEKRQRAPSAYNRFIK 101
            I  SSDN+E+ D  + +N V++KPPEKRQRAPSAYN FIK
Sbjct: 95  FIAISSDNDEDIDKVNPVNRVINKPPEKRQRAPSAYNCFIK 135

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565974|ref|XP_003551210.1| PREDICTED: axial regulator YABBY 4-like [Glycine max]

 Score =  110 bits (274), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 60/101 (59%), Positives = 72/101 (71%), Gaps = 5/101 (4%)

Query: 1   MSMVVTVRCGHCTSLLSVNMMKASFVPLHLLASFSHDDEPKEEFRKEEVQADQKAFKRFS 60
           +S VVTVRCGHCTSLLSVNM KAS VP HLLAS +H  EPKE   ++      K+   ++
Sbjct: 35  LSTVVTVRCGHCTSLLSVNMKKASLVPFHLLASLTH-LEPKEGASED---GANKSLSSYN 90

Query: 61  PSILTSSDNEEEDTGSVINHVVSKPPEKRQRAPSAYNRFIK 101
            S +T+SD EEE+  + I+  V KPPEKRQR PSAYNRFIK
Sbjct: 91  TSTMTNSDCEEENV-TQISDFVHKPPEKRQRTPSAYNRFIK 130

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
TAIR|locus:2028020	231	INO "INNER NO OUTER" [Arabidop	0.980	0.428	0.638	9.4e-27
TAIR|locus:2066311	164	YAB5 "YABBY5" [Arabidopsis tha	0.821	0.506	0.387	1.2e-10
TAIR|locus:2126931	240	YAB3 "YABBY3" [Arabidopsis tha	0.188	0.079	0.842	3.6e-10
TAIR|locus:2826731	184	YAB2 "YABBY2" [Arabidopsis tha	0.881	0.483	0.41	8.4e-10
TAIR|locus:2005492	229	AFO "AT2G45190" [Arabidopsis t	0.910	0.401	0.385	1.9e-08
UNIPROTKB|Q7XIM7	169	YAB1 "Protein YABBY 1" [Oryza	0.851	0.508	0.33	6.8e-08
UNIPROTKB|Q76EJ0	194	DL "Protein DROOPING LEAF" [Or	0.821	0.427	0.371	1.6e-06
TAIR|locus:2026418	181	CRC "AT1G69180" [Arabidopsis t	0.811	0.453	0.340	3.3e-05

TAIR|locus:2028020 INO "INNER NO OUTER" [Arabidopsis thaliana (taxid:3702)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 69/108 (63%), Positives = 81/108 (75%)

Query:     1 MSMVVTVRCGHCTSLLSVNMMKASFVPLHLLASFSHDDEP-KEEFRKEEVQADQKAFK-- 57
             +SMVVTVRCGHCTSLLSVN+MKASF+PLHLLAS SH DE  KEE    +   +++A+K  
Sbjct:    42 LSMVVTVRCGHCTSLLSVNLMKASFIPLHLLASLSHLDETGKEEVAATD-GVEEEAWKVN 100

Query:    58 ---RFSPSIL-TSSDNEEEDTGSVINHVVSKPPEKRQRAPSAYNRFIK 101
                  SP+ L +SSDNE+ED   V   VV+KPPEKRQRAPSAYN FIK
Sbjct:   101 QEKENSPTTLVSSSDNEDEDVSRVYQ-VVNKPPEKRQRAPSAYNCFIK 147

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=IDA

GO:0048481 "ovule development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0006333 "chromatin assembly or disassembly" evidence=RCA

TAIR|locus:2066311 YAB5 "YABBY5" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 38/98 (38%), Positives = 52/98 (53%)

Query:     4 VVTVRCGHCTSLLSVNMMKASFVPLHLLASFSHDDEPKEEFRKEEVQADQKAFKRFSPSI 63
             +VTVRCGHCT+L SVNM  A       L S S  +     +   E  +  ++  +    I
Sbjct:    35 IVTVRCGHCTNLWSVNMAAA-------LQSLSRPNFQATNYAVPEYGSSSRSHTKIPSRI 87

Query:    64 LTSSDNEEEDTGSVINHVVSKPPEKRQRAPSAYNRFIK 101
              T +  E+         +V++PPEKRQR PSAYN+FIK
Sbjct:    88 STRTITEQR--------IVNRPPEKRQRVPSAYNQFIK 117

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006333 "chromatin assembly or disassembly" evidence=RCA

GO:0006417 "regulation of translation" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2126931 YAB3 "YABBY3" [Arabidopsis thaliana (taxid:3702)]

 Score = 90 (36.7 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
 Identities = 16/19 (84%), Positives = 18/19 (94%)

Query:    83 SKPPEKRQRAPSAYNRFIK 101
             ++PPEKRQR PSAYNRFIK
Sbjct:   147 NRPPEKRQRVPSAYNRFIK 165

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0010154 "fruit development" evidence=IMP

GO:0010158 "abaxial cell fate specification" evidence=IGI

TAIR|locus:2826731 YAB2 "YABBY2" [Arabidopsis thaliana (taxid:3702)]

 Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 41/100 (41%), Positives = 54/100 (54%)

Query:     4 VVTVRCGHCTSLLSVNMMKASFVPLHLLASFS-HDD-EPKEEFRKEEVQADQKAFKRFSP 61
             +VTVRCGHCT+LLS+N+     V LH  ++   H D +P  +     V     A    S 
Sbjct:    34 LVTVRCGHCTNLLSLNIG----VSLHQTSAPPIHQDLQPHRQHTTSLVTRKDCASSSRST 89

Query:    62 SILTSSDNEEEDTGSVINHVVSKPPEKRQRAPSAYNRFIK 101
             + L+ + + E      I     +PPEKRQR PSAYNRFIK
Sbjct:    90 NNLSENIDREAPRMPPI-----RPPEKRQRVPSAYNRFIK 124

GO:0005634 "nucleus" evidence=ISM

GO:0010158 "abaxial cell fate specification" evidence=IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2005492 AFO "AT2G45190" [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 1.9e-08, P = 1.9e-08
 Identities = 42/109 (38%), Positives = 54/109 (49%)

Query:     5 VTVRCGHCTSLLSVNMMKASFVP----LHLLA---SFSHDDEPKEEFRKEE-----VQAD 52
             VTVRCG CT+LLSVNM ++  +P    L L     S+ +  +  EE R        +  +
Sbjct:    50 VTVRCGCCTNLLSVNM-RSYVLPASNQLQLQLGPHSYFNPQDILEELRDAPSNMNMMMMN 108

Query:    53 QKAFKRFSPSILTSSDNEEEDTGSVINHVVSKPPEKRQRAPSAYNRFIK 101
             Q       PS +      E      +N    +PPEKRQR PSAYNRFIK
Sbjct:   109 QHPTMNDIPSFMDLHQQHEIPKAPPVN----RPPEKRQRVPSAYNRFIK 153

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;TAS

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=ISS

GO:0009909 "regulation of flower development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0010154 "fruit development" evidence=IMP

GO:0010158 "abaxial cell fate specification" evidence=IGI

GO:0010159 "specification of organ position" evidence=IMP

GO:0010093 "specification of floral organ identity" evidence=IMP

GO:0010450 "inflorescence meristem growth" evidence=IMP

GO:0006333 "chromatin assembly or disassembly" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=IMP

GO:0045165 "cell fate commitment" evidence=IMP

UNIPROTKB|Q7XIM7 YAB1 "Protein YABBY 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
 Identities = 33/100 (33%), Positives = 52/100 (52%)

Query:     4 VVTVRCGHCTSLLSVNMMKASFVPLHLLASFSHDDEPKEEFRKEEVQADQKAFK--RFSP 61
             +VTVRCGHCT +LS+++      P H   +          F+     +   A +  R S 
Sbjct:    34 IVTVRCGHCTMVLSMDL-----APFHQARTVQDHQVQNRGFQGNNFGSYDIASRNQRTST 88

Query:    62 SILTSSDNEEEDTGSVINHVVSKPPEKRQRAPSAYNRFIK 101
             ++     ++++     ++ +  +PPEKRQR PSAYNRFIK
Sbjct:    89 AMYPMPTSQQQ-----VSPI--RPPEKRQRVPSAYNRFIK 121

GO:0005634 "nucleus" evidence=IDA

GO:0048833 "specification of floral organ number" evidence=IMP

UNIPROTKB|Q76EJ0 DL "Protein DROOPING LEAF" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 111 (44.1 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 36/97 (37%), Positives = 45/97 (46%)

Query:     5 VTVRCGHCTSLLSVNMMKASFVPLHLLASFSHDDEPKEEFRKEEVQADQKAFKRFSPSIL 64
             VTV+CGHC +L  ++       PL      S  D P   F     Q      +R  P  L
Sbjct:    35 VTVKCGHCNNLSFLSPRPPMVQPL------SPTDHPLGPF-----QGPCTDCRRNQPLPL 83

Query:    65 TSSDNEEEDTGSVINHVVSKPPEKRQRAPSAYNRFIK 101
              S  + E   GS     V KPPEK+ R PSAYNRF++
Sbjct:    84 VSPTSNE---GSPRAPFVVKPPEKKHRLPSAYNRFMR 117

GO:0010022 "meristem determinacy" evidence=IGI;IMP

GO:0048366 "leaf development" evidence=IMP

GO:0048440 "carpel development" evidence=IMP

TAIR|locus:2026418 CRC "AT1G69180" [Arabidopsis thaliana (taxid:3702)]

 Score = 99 (39.9 bits), Expect = 3.3e-05, P = 3.3e-05
 Identities = 33/97 (34%), Positives = 48/97 (49%)

Query:     5 VTVRCGHCTSLLSVNMMKASFVPLHLLASFSHDDEPKEEFRKEEVQADQKAFKRFSPSIL 64
             VTV+CGHC +L  +        PL    S +      + F   +       +K+ S S  
Sbjct:    46 VTVKCGHCGNLSFLTTTP----PLQGHVSLTLQ---MQSFGGSD-------YKKGSSSSS 91

Query:    65 TSSDNEEEDTGSVINHVVSKPPEKRQRAPSAYNRFIK 101
             +SS + ++        VV KPPEK+QR PSAYNRF++
Sbjct:    92 SSSTSSDQPPSPSPPFVV-KPPEKKQRLPSAYNRFMR 127


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.128   0.360    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      101       101   0.00091  102 3  11 22  0.41    30
                                                     29  0.47    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  517 (55 KB)
  Total size of DFA:  104 KB (2072 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.35u 0.24s 14.59t   Elapsed:  00:00:01
  Total cpu time:  14.35u 0.24s 14.59t   Elapsed:  00:00:01
  Start:  Fri May 10 11:22:15 2013   End:  Fri May 10 11:22:16 2013

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0010254 "nectary development" evidence=IMP

GO:0048440 "carpel development" evidence=RCA;IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=TAS

GO:0010582 "floral meristem determinacy" evidence=IGI

GO:0048479 "style development" evidence=IMP

GO:0006333 "chromatin assembly or disassembly" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010093 "specification of floral organ identity" evidence=RCA

GO:0031540 "regulation of anthocyanin biosynthetic process" evidence=RCA

GO:0048441 "petal development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	101
pfam04690	170	pfam04690, YABBY, YABBY protein	2e-25

>gnl|CDD|113458 pfam04690, YABBY, YABBY protein

 Score = 92.6 bits (230), Expect = 2e-25
 Identities = 46/108 (42%), Positives = 60/108 (55%), Gaps = 11/108 (10%)

Query: 1   MSMVVTVRCGHCTSLLSVNMMKASFVPLHLLASFSHDDEPKEEFRKEEVQADQKAFKRF- 59
           +  +VTVRCGHCT+LLSVN+M  S    HLL + SH DE  +    + +    + F    
Sbjct: 31  LFNIVTVRCGHCTNLLSVNLMMRS----HLLPALSHLDETGKPELLQNLGVHGQNFNSNM 86

Query: 60  ----SPSILTSSDNEEEDTGSVINHV--VSKPPEKRQRAPSAYNRFIK 101
               S S   SS    ++    +  V  V++PPEKRQR PSAYNRFIK
Sbjct: 87  MKSHSASTSVSSYMMSDNQDEEMPRVPPVNRPPEKRQRVPSAYNRFIK 134

YABBY proteins are a group of plant-specific transcription involved in the specification of abaxial polarity in lateral organs. Length = 170

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	101
PF04690	170	YABBY: YABBY protein; InterPro: IPR006780 YABBY pr	100.0
PF11331	46	DUF3133: Protein of unknown function (DUF3133); In	87.89
PF10122	51	Mu-like_Com: Mu-like prophage protein Com; InterPr	85.11
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	84.45

>PF04690 YABBY: YABBY protein; InterPro: IPR006780 YABBY proteins are a group of plant-specific transcription factors involved in the specification of abaxial polarity in lateral organs such as leaves and floral organs [, ]

Probab=100.00  E-value=7.5e-37  Score=227.70  Aligned_cols=100  Identities=41%  Similarity=0.548  Sum_probs=54.7

Q ss_pred             CCceeeEeCCCCCCccccccCccccc-ccc--ccccCCCCCChhhhhhchhhHHhhhhhcCCCCc-cccCCCCccccccC
Q 038029            1 MSMVVTVRCGHCTSLLSVNMMKASFV-PLH--LLASFSHDDEPKEEFRKEEVQADQKAFKRFSPS-ILTSSDNEEEDTGS   76 (101)
Q Consensus         1 l~~iVTVRCGHCtnLlSVNm~~~~~~-P~~--~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ss~~~~~~~~~   76 (101)
                      ||+|||||||||||||||||++++++ |.+  +.+++..+..+..............+.++.+.+ .......++ +...
T Consensus        31 L~~~VTVRCGHCtNLLSVNm~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  109 (170)
T PF04690_consen   31 LLKTVTVRCGHCTNLLSVNMRALLQPLPSQDHLQHSLLPPQSQELQFQPENFGSNSSSSSSSSSSSSSSSMSFSE-EEEI  109 (170)
T ss_pred             hhhhhceeccCccceeeeeccccccCCCcccchhccccccccccccccccccccccccCCCccccccccccCccc-cccc
Confidence            79999999999999999999976432 322  111111111000000000000000011111111 111111222 3367


Q ss_pred             ccCCCCCCCCCccCCCCcccccCCC
Q 038029           77 VINHVVSKPPEKRQRAPSAYNRFIK  101 (101)
Q Consensus        77 p~~~~v~rPPEKRQRvPSAYNRFIK  101 (101)
                      |+.+.|+||||||||+|||||||||
T Consensus       110 pr~~~v~kPPEKRqR~psaYn~f~k  134 (170)
T PF04690_consen  110 PRAPPVNKPPEKRQRVPSAYNRFMK  134 (170)
T ss_pred             cccccccCCccccCCCchhHHHHHH
Confidence            8888899999999999999999998

>PF11331 DUF3133: Protein of unknown function (DUF3133); InterPro: IPR021480 This eukaryotic family of proteins has no known function

Probab=87.89  E-value=0.34  Score=29.43  Aligned_cols=17  Identities=35%  Similarity=0.899  Sum_probs=14.3

Q ss_pred             eeeEeCCCCCCcccccc
Q 038029            4 VVTVRCGHCTSLLSVNM   20 (101)
Q Consensus         4 iVTVRCGHCtnLlSVNm   20 (101)
                      .-.+|||.|..++++.+
T Consensus        29 ~~klrCGaCs~vl~~s~   45 (46)
T PF11331_consen   29 QQKLRCGACSEVLSFSL   45 (46)
T ss_pred             eeEEeCCCCceeEEEec
Confidence            45789999999998875

>PF10122 Mu-like_Com: Mu-like prophage protein Com; InterPro: IPR019294 Members of this entry belong to the Com family of proteins that act as translational regulators of mom [, ]

Probab=85.11  E-value=0.28  Score=30.56  Aligned_cols=14  Identities=50%  Similarity=1.179  Sum_probs=11.5

Q ss_pred             eeEeCCCCCCcccc
Q 038029            5 VTVRCGHCTSLLSV   18 (101)
Q Consensus         5 VTVRCGHCtnLlSV   18 (101)
                      =.+|||||.-||--
T Consensus         3 ~eiRC~~CnklLa~   16 (51)
T PF10122_consen    3 KEIRCGHCNKLLAK   16 (51)
T ss_pred             cceeccchhHHHhh
Confidence            36899999999754

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=84.45  E-value=0.59  Score=26.50  Aligned_cols=15  Identities=33%  Similarity=0.680  Sum_probs=11.9

Q ss_pred             eeeEeCCCCCCcccc
Q 038029            4 VVTVRCGHCTSLLSV   18 (101)
Q Consensus         4 iVTVRCGHCtnLlSV   18 (101)
                      ...|||++|...+.|
T Consensus        23 ~~~vrC~~C~~~f~v   37 (37)
T PF13719_consen   23 GRKVRCPKCGHVFRV   37 (37)
T ss_pred             CcEEECCCCCcEeeC
Confidence            357999999988654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00