Citrus Sinensis ID: 038053

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-
Protein Sequence
MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEAANGGQPYTDEFLAELKRGATELRDQQAEVDSLKEYSKQEISKLMGQMQESYEDQIKRITEMVESELKETTTRLEQQLAEEQAARLMAEEVAQLAQMKSTKFKLG
Secondary Structure (PSIPRED)
cccccccccccccccccccccccEEEEEEccccccHHHHHHHHcccccccccccccccccEEEEEEEEEEccEEEEEEccccccccccccHHHHHHHHHHHHccccccEEEEEEEEccccccHHHHHHcccHHHHHHHHHHHHHcEEEEEcccccHHHHHHHcHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccEEEEEEEcccccccccccHHcccHHHHccccccccHHHHHHcccEcccccEEEEEEcccccccccccHHHHHHHHHHHHHcccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHcEEEEEccccHHccccHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mssgmgervidgdwkptsssngkrTVVLLGrtgngksatgnsilGRKAFkasadssgvtktcemkttvlkdgqvvnvidtpglfdssagsefvGKEIVKRIGLAKGGIHAVLVVFSVRsrfsqeeeaanggqpytDEFLAELKRGATELRDQQAEVDSLKEYSKQEISKLMGQMQESYEDQIKRITEMVESELKETTTRLEQQLAEEQAARLMAEEVAQLAQMKSTKFKLG
Flexible Loop (DISEMBL)
mssgmgervidgdwkptsssngkrTVVLlgrtgngksatgnsilgrkafkasadssgvtktcemkttvlkdgqvvnVIDTPglfdssagsefVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQeeeaanggqpytdEFLAELKRGATELRDQQAEVDSLKEYSKQEISKLMGQMQESYEDQIKRITEMVESELKETTTRLEQQLAEEQAARLMAEEVAQLAqmkstkfklg
Low Complexity Region (SEG)
MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLvvfsvrsrfsQEEEAANGGQPYTDEFLAELKRGATELRDQQAEVDSLKEYSKQEISKLMGQMQESYEDQIKRITEMVESELKETTTRLEQQLAEEQAARLMAEEVAQLAQMKSTKFKLG
Disordered region (IsUnstruct)
**********************************************************TKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRS****************************************************************************************************************
Disordered Region (DISOPRED)
*************************VVLLGRTGNGKSATGNSILGRKAFKASADSSGVT*TCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEAANGGQPYTDEFLAELKRGATELRDQQAEVDSLKEYSKQEISKLMGQMQESYEDQIKRIT*****ELKETTTRLEQQLAEEQAARLMAE*********S**F***
Disordered Region (DISEMBL)
*********IDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF**********KTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSR***********QPYTDEFLAELKRGATELRDQQAEVDSLKEYSKQEISKLMGQMQESYEDQIKRITEMVESELKETTTRLEQQLAEEQAARLMAEEVAQLAQMKSTKFKLG
Disordered Region (DISPRO)
*********************GKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEAANGGQPYTDEFLAELKRGATELRDQQAEVDSLKEYSKQEISKLMGQMQESYEDQIKRITEMVESELKETTTRLEQQLAEEQAARLMAEEVAQLAQMK*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEAANGGQPYTDEFLAELKRGATELRDQQAEVDSLKEYSKQEISKLMGQMxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRLMAEEVAQLAQMKSTKFKLG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	231	2.2.26 [Sep-21-2011]
P54120	353	Protein AIG1 OS=Arabidops	no	no	0.467	0.305	0.596	6e-32
O81025	463	Putative protein PHLOEM P	no	no	0.450	0.224	0.509	5e-26
Q9NUV9	329	GTPase IMAP family member	yes	no	0.458	0.322	0.435	2e-19
Q8K3K9	310	GTPase IMAP family member	yes	no	0.437	0.325	0.441	6e-17
Q99JY3	219	GTPase IMAP family member	no	no	0.645	0.680	0.348	7e-17
Q8ND71	665	GTPase IMAP family member	no	no	0.744	0.258	0.318	6e-14
Q96F15	307	GTPase IMAP family member	no	no	0.437	0.328	0.398	7e-14
Q8K349	305	GTPase IMAP family member	no	no	0.424	0.321	0.441	9e-13
Q8NHV1	300	GTPase IMAP family member	no	no	0.428	0.33	0.396	1e-12
Q6P9H5	292	GTPase IMAP family member	no	no	0.424	0.335	0.405	2e-12

>sp|P54120|AIG1_ARATH Protein AIG1 OS=Arabidopsis thaliana GN=AIG1 PE=2 SV=1

 Score =  137 bits (345), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 65/109 (59%), Positives = 79/109 (72%)

Query: 18  SSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNV 77
           S  +    +VL+GRTGNGKSATGNSI+  K FK+   SSGVT  C     V  +G ++NV
Sbjct: 37  SQPHPVENIVLVGRTGNGKSATGNSIVRSKVFKSKTKSSGVTMECHAVKAVTPEGPILNV 96

Query: 78  IDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEE 126
           IDTPGLFD S  +EF+GKEIVK + LA GG+HAVL+V SVR+R SQEEE
Sbjct: 97  IDTPGLFDLSVSAEFIGKEIVKCLTLADGGLHAVLLVLSVRTRISQEEE 145

Arabidopsis thaliana (taxid: 3702)

>sp|O81025|P2A03_ARATH Putative protein PHLOEM PROTEIN 2-LIKE A3 OS=Arabidopsis thaliana GN=PP2A3 PE=4 SV=1

 Score =  117 bits (294), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 53/104 (50%), Positives = 74/104 (71%)

Query: 24  RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 83
           + +VL+GRTGNGKS+TGN++LG K FK+   + GVT  CEM    ++DG ++NVIDTPGL
Sbjct: 6   KNIVLVGRTGNGKSSTGNTLLGTKQFKSKNQAKGVTMICEMYRAAIQDGPIINVIDTPGL 65

Query: 84  FDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA 127
            DS    + +  EI+  + +A+ GIHAVL+V S R R S+EEE+
Sbjct: 66  CDSFVPGDDISNEIINCLTMAEEGIHAVLLVLSARGRISKEEES 109

Arabidopsis thaliana (taxid: 3702)

>sp|Q9NUV9|GIMA4_HUMAN GTPase IMAP family member 4 OS=Homo sapiens GN=GIMAP4 PE=1 SV=1

 Score = 95.9 bits (237), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/108 (43%), Positives = 72/108 (66%), Gaps = 2/108 (1%)

Query: 21  NGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDT 80
           N +  +VL+G+TG GKSATGNSILGRK F +   +  +TK CE +++  K+ ++V V+DT
Sbjct: 28  NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELV-VVDT 86

Query: 81  PGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEAA 128
           PG+FD+   +    KEI++ I L   G HA+L+V  +  R+++EE  A
Sbjct: 87  PGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPL-GRYTEEEHKA 133

May play a role in regulating lymphocyte apoptosis (By similarity). Exhibits intrisinic GTPase activity. Shows a higher affinity for GDP over GTP (about 12-fold higher), and binding shows an absolute requirement for magnesium.

Homo sapiens (taxid: 9606)

>sp|Q8K3K9|GIMA4_RAT GTPase IMAP family member 4 OS=Rattus norvegicus GN=Gimap4 PE=2 SV=1

 Score = 87.8 bits (216), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 45/102 (44%), Positives = 64/102 (62%), Gaps = 1/102 (0%)

Query: 26  VVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 85
           +VLLG+TG GKS+TGNSILGRKAF +   +  +TK CE K   + DG+ + V+DTPG+FD
Sbjct: 33  IVLLGKTGAGKSSTGNSILGRKAFLSGICAKSITKVCE-KGVSIWDGKELVVVDTPGIFD 91

Query: 86  SSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA 127
           +        KEI + + L   G HA+L+V  +     +E +A
Sbjct: 92  TEVPDADTQKEITRCVALTSPGPHALLLVIPLGCYTVEEHKA 133

May play a role in regulating lymphocyte apoptosis. Exhibits intrisinic GTPase activity. Shows a higher affinity for GDP over GTP (about 12-fold higher), and binding shows an absolute requirement for magnesium.

Rattus norvegicus (taxid: 10116)

>sp|Q99JY3|GIMA4_MOUSE GTPase IMAP family member 4 OS=Mus musculus GN=Gimap4 PE=1 SV=1

 Score = 87.4 bits (215), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 84/158 (53%), Gaps = 9/158 (5%)

Query: 26  VVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 85
           +VLLG+TG GKS+TGNSILG K F +   +  +TK CE + +   DG+ + V+DTPG+FD
Sbjct: 33  IVLLGKTGAGKSSTGNSILGEKVFNSGICAKSITKVCEKRVSTW-DGKELVVVDTPGIFD 91

Query: 86  SSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEAANGGQPYTDEFLAELKRG 145
           +        +EI + + L   G HA+L+V  +  R++ EE  A   Q   D F  + +R 
Sbjct: 92  TEVPDADTQREITRYVALTSPGPHALLLVVPL-GRYTVEEHKAT--QKILDMFGKQARRF 148

Query: 146 ATEL--RDQQAEVDSLKEY---SKQEISKLMGQMQESY 178
              L  R    E   + EY   + +   ++M + Q  Y
Sbjct: 149 MILLLTRKDDLEDTDIHEYLEKAPKFFQEVMHEFQNRY 186

Exhibits intrisinic GTPase activity. Shows a higher affinity for GDP over GTP (about 12-fold higher), and binding shows an absolute requirement for magnesium (By similarity). May play a role in regulating lymphocyte apoptosis.

Mus musculus (taxid: 10090)

>sp|Q8ND71|GIMA8_HUMAN GTPase IMAP family member 8 OS=Homo sapiens GN=GIMAP8 PE=1 SV=2

 Score = 77.8 bits (190), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 4/176 (2%)

Query: 26  VVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 85
           ++LLG+  +GKSATGN+ILG+  FK+      V K C+ ++ VL++ +VV VIDTP LF 
Sbjct: 13  LLLLGKCRSGKSATGNAILGKHVFKSKFSDQTVIKMCQRESWVLRERKVV-VIDTPDLFS 71

Query: 86  SSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEAANGGQPYTDEFLAELKRG 145
           S A +E   + I   + L+   +HA+L+V ++     ++EE A G Q     F AE +R 
Sbjct: 72  SIACAEDKQRNIQHCLELSAPSLHALLLVIAIGHFTREDEETAKGIQQV---FGAEARRH 128

Query: 146 ATELRDQQAEVDSLKEYSKQEISKLMGQMQESYEDQIKRITEMVESELKETTTRLE 201
              +  ++ ++         E +K + Q+ + YE +         S+ ++ T  LE
Sbjct: 129 IIIVFTRKDDLGDDLLQDFIEKNKPLKQLVQDYEGRYCIFNNKTNSKDEQITQVLE 184

Exerts an anti-apoptotic effect in the immune system and is involved in responses to infections.

Homo sapiens (taxid: 9606)

>sp|Q96F15|GIMA5_HUMAN GTPase IMAP family member 5 OS=Homo sapiens GN=GIMAP5 PE=1 SV=1

 Score = 77.4 bits (189), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 41/103 (39%), Positives = 67/103 (65%), Gaps = 2/103 (1%)

Query: 26  VVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 85
           ++L+G+TG GKSATGNSILG+  F++   +  VT+TC++KT    +G+ V V+DTP +F+
Sbjct: 30  IILVGKTGCGKSATGNSILGQPVFESKLRAQSVTRTCQVKTGTW-NGRKVLVVDTPSIFE 88

Query: 86  SSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEAA 128
           S A ++ + K I     L+  G H +L+V  +  RF+ ++  A
Sbjct: 89  SQADTQELYKNIGDCYLLSAPGPHVLLLVIQL-GRFTAQDTVA 130

Required for mitochondrial integrity and T-cell survival. May contribute to T-cell quiescence.

Homo sapiens (taxid: 9606)

>sp|Q8K349|GIMA6_MOUSE GTPase IMAP family member 6 OS=Mus musculus GN=Gimap6 PE=2 SV=1

 Score = 73.9 bits (180), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 45/102 (44%), Positives = 65/102 (63%), Gaps = 4/102 (3%)

Query: 26  VVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 85
           ++L+G+TG+GKSATGNSILGR+AF++   +  VT T + K T   +G+ + VIDTP +F 
Sbjct: 106 LLLVGKTGSGKSATGNSILGRQAFESKISARPVTTTFQ-KGTREFEGKELEVIDTPDIFS 164

Query: 86  SSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA 127
                E   K+I     LA  G HAVL+V  V  R++ E++A
Sbjct: 165 PQNQPEATAKKICDL--LASPGPHAVLLVIQV-GRYTAEDQA 203

Mus musculus (taxid: 10090)

>sp|Q8NHV1|GIMA7_HUMAN GTPase IMAP family member 7 OS=Homo sapiens GN=GIMAP7 PE=2 SV=1

 Score = 73.6 bits (179), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/101 (39%), Positives = 65/101 (64%), Gaps = 2/101 (1%)

Query: 26  VVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 85
           +VL+G+TG+GKSAT N+ILG + F +   +  VTK C+ K +    G+ + V+DTPGLFD
Sbjct: 11  IVLVGKTGSGKSATANTILGEEIFDSRIAAQAVTKNCQ-KASREWQGRDLLVVDTPGLFD 69

Query: 86  SSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEE 126
           +    +   KEI + I  +  G HA+++V  +  R+++EE+
Sbjct: 70  TKESLDTTCKEISRCIISSCPGPHAIVLVL-LLGRYTEEEQ 109

Homo sapiens (taxid: 9606)

>sp|Q6P9H5|GIMA6_HUMAN GTPase IMAP family member 6 OS=Homo sapiens GN=GIMAP6 PE=2 SV=1

 Score = 72.8 bits (177), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/101 (40%), Positives = 62/101 (61%), Gaps = 3/101 (2%)

Query: 26  VVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 85
           ++L+G+TG+GKSATGNSILGR  F++   +  VTKT + ++     G+ + VIDTP +  
Sbjct: 43  LILMGKTGSGKSATGNSILGRDVFESKLSTRPVTKTSQRRSREWA-GKELEVIDTPNILS 101

Query: 86  SSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEE 126
                E V   I + I L+  G HAVL+V  +  RF+ E++
Sbjct: 102 PQVSPE-VADAICQAIVLSAPGPHAVLLVTQL-GRFTDEDQ 140

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	231
255539412	339	aig1, putative [Ricinus communis] gi|223	0.536	0.365	0.774	2e-49
224146305	335	predicted protein [Populus trichocarpa]	0.515	0.355	0.758	6e-49
296089429	345	unnamed protein product [Vitis vinifera]	0.549	0.368	0.724	6e-47
225460273	340	PREDICTED: protein AIG1 [Vitis vinifera]	0.536	0.364	0.733	1e-46
356526433	350	PREDICTED: protein AIG1-like [Glycine ma	0.515	0.34	0.764	6e-46
147836179	566	hypothetical protein VITISV_037325 [Viti	0.359	0.146	0.733	1e-45
224136037	259	predicted protein [Populus trichocarpa]	0.476	0.424	0.810	2e-45
363814318	336	uncharacterized protein LOC100807910 [Gl	0.536	0.369	0.725	2e-44
449464872	341	PREDICTED: protein AIG1-like [Cucumis sa	0.536	0.363	0.726	7e-43
357470409	346	AIG1 [Medicago truncatula] gi|355506544|	0.536	0.358	0.661	6e-42

>gi|255539412|ref|XP_002510771.1| aig1, putative [Ricinus communis] gi|223551472|gb|EEF52958.1| aig1, putative [Ricinus communis]

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 96/124 (77%), Positives = 107/124 (86%)

Query: 5   MGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEM 64
           MG   ID DW+ TS SNG RTVVL+GRTGNGKSATGNS+LGRKAFK+ A SSGVT TCE+
Sbjct: 1   MGGSAIDDDWELTSPSNGVRTVVLVGRTGNGKSATGNSLLGRKAFKSRASSSGVTSTCEL 60

Query: 65  KTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQE 124
           + TV+ DGQV+NV+DTPGLFD SA SEFVGKEIVK I +AK GIHAVLVVFSVR+RFSQE
Sbjct: 61  QQTVITDGQVINVVDTPGLFDFSAESEFVGKEIVKCINMAKDGIHAVLVVFSVRTRFSQE 120

Query: 125 EEAA 128
           EEAA
Sbjct: 121 EEAA 124

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146305|ref|XP_002325957.1| predicted protein [Populus trichocarpa] gi|222862832|gb|EEF00339.1| predicted protein [Populus trichocarpa]

 Score =  199 bits (507), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 94/124 (75%), Positives = 108/124 (87%)

Query: 5   MGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEM 64
           MG   +D DW+  S SNG RT+VL+GRTGNGKSATGNSILGRKAFK+ A SSGVT +CE+
Sbjct: 1   MGGSAMDDDWEFASPSNGVRTIVLVGRTGNGKSATGNSILGRKAFKSRASSSGVTSSCEL 60

Query: 65  KTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQE 124
           + TVL+DGQ++NVIDTPGLFD SAGSEFVG+EIVK I +AK GIHAVLVVFSVR+RFSQE
Sbjct: 61  QRTVLRDGQIINVIDTPGLFDFSAGSEFVGREIVKCINMAKDGIHAVLVVFSVRTRFSQE 120

Query: 125 EEAA 128
           EEAA
Sbjct: 121 EEAA 124

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089429|emb|CBI39248.3| unnamed protein product [Vitis vinifera]

 Score =  192 bits (489), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 92/127 (72%), Positives = 110/127 (86%)

Query: 2   SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKT 61
           S+ MG   ID +W+ T+ S+G RT+VL+GRTGNGKSATGNSILGRK+FK+ A SSGVT T
Sbjct: 3   STRMGGSSIDDEWEFTAPSSGVRTLVLVGRTGNGKSATGNSILGRKSFKSRASSSGVTST 62

Query: 62  CEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRF 121
           CE++ T+L+DGQ+VNVIDTPGLFD SA S+FVGKEIVK I LAK G+HAVLVVFSVR+RF
Sbjct: 63  CELQRTILRDGQIVNVIDTPGLFDLSAESDFVGKEIVKCIDLAKDGVHAVLVVFSVRTRF 122

Query: 122 SQEEEAA 128
           S+EEEAA
Sbjct: 123 SKEEEAA 129

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460273|ref|XP_002281996.1| PREDICTED: protein AIG1 [Vitis vinifera]

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 91/124 (73%), Positives = 108/124 (87%)

Query: 5   MGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEM 64
           MG   ID +W+ T+ S+G RT+VL+GRTGNGKSATGNSILGRK+FK+ A SSGVT TCE+
Sbjct: 1   MGGSSIDDEWEFTAPSSGVRTLVLVGRTGNGKSATGNSILGRKSFKSRASSSGVTSTCEL 60

Query: 65  KTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQE 124
           + T+L+DGQ+VNVIDTPGLFD SA S+FVGKEIVK I LAK G+HAVLVVFSVR+RFS+E
Sbjct: 61  QRTILRDGQIVNVIDTPGLFDLSAESDFVGKEIVKCIDLAKDGVHAVLVVFSVRTRFSKE 120

Query: 125 EEAA 128
           EEAA
Sbjct: 121 EEAA 124

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526433|ref|XP_003531822.1| PREDICTED: protein AIG1-like [Glycine max]

 Score =  189 bits (481), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 91/119 (76%), Positives = 104/119 (87%)

Query: 10  IDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVL 69
           ID DW+ TSSSN  RTVVL+GRTGNGKSATGN+ILGRKAFK+ A SS V+ +CE+KTT L
Sbjct: 20  IDDDWELTSSSNEVRTVVLVGRTGNGKSATGNTILGRKAFKSRASSSAVSTSCELKTTEL 79

Query: 70  KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEAA 128
            +GQ+VNVIDTPGLFD SAGSEFVGKEIVK I LAK GIHAV+VVFSVR+RF++EEE A
Sbjct: 80  NNGQIVNVIDTPGLFDLSAGSEFVGKEIVKCIDLAKDGIHAVIVVFSVRTRFTEEEETA 138

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147836179|emb|CAN68778.1| hypothetical protein VITISV_037325 [Vitis vinifera]

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 91/124 (73%), Positives = 108/124 (87%)

Query: 5   MGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEM 64
           MG   ID +W+ T+ S+G RT+VL+GRTGNGKSATGNSILGRK+FK+ A SSGVT TCE+
Sbjct: 1   MGGSSIDDEWEFTAPSSGVRTLVLVGRTGNGKSATGNSILGRKSFKSRASSSGVTSTCEL 60

Query: 65  KTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQE 124
           + T+L+DGQ+VNVIDTPGLFD SA S+FVGKEIVK I LAK G+HAVLVVFSVR+RFS+E
Sbjct: 61  QRTILRDGQIVNVIDTPGLFDLSAESDFVGKEIVKCIDLAKDGVHAVLVVFSVRTRFSKE 120

Query: 125 EEAA 128
           EEAA
Sbjct: 121 EEAA 124

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136037|ref|XP_002327365.1| predicted protein [Populus trichocarpa] gi|222835735|gb|EEE74170.1| predicted protein [Populus trichocarpa]

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 90/111 (81%), Positives = 101/111 (90%)

Query: 18  SSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNV 77
           S SNG RTVVL+GRTGNGKSATGNSILG+KAFK+ A SSGVT TCE+++TVL DGQ++NV
Sbjct: 2   SPSNGVRTVVLVGRTGNGKSATGNSILGKKAFKSRASSSGVTSTCELQSTVLGDGQIINV 61

Query: 78  IDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEAA 128
           IDTPGLFD SAGSEFVG+EIVK I +AK GIHAVLVVFSVR+RFSQEEEAA
Sbjct: 62  IDTPGLFDFSAGSEFVGREIVKCINMAKDGIHAVLVVFSVRTRFSQEEEAA 112

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363814318|ref|NP_001242800.1| uncharacterized protein LOC100807910 [Glycine max] gi|255639255|gb|ACU19926.1| unknown [Glycine max]

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 90/124 (72%), Positives = 103/124 (83%)

Query: 5   MGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEM 64
           MG   I  DW+ TSSSN  RTVVL+GRTGNGKSATGN+ILGRK FK+ A SS V+ +CE+
Sbjct: 1   MGGSSIGDDWELTSSSNEGRTVVLVGRTGNGKSATGNTILGRKVFKSRASSSAVSTSCEL 60

Query: 65  KTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQE 124
           +TT L DGQ+VNVIDTPGLFD S GSEFVGKEIVK I LAK GIHAV+VVFSVR+RF++E
Sbjct: 61  QTTELNDGQIVNVIDTPGLFDLSVGSEFVGKEIVKCIDLAKDGIHAVIVVFSVRTRFTEE 120

Query: 125 EEAA 128
           EE A
Sbjct: 121 EETA 124

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464872|ref|XP_004150153.1| PREDICTED: protein AIG1-like [Cucumis sativus] gi|449520867|ref|XP_004167454.1| PREDICTED: protein AIG1-like [Cucumis sativus]

 Score =  179 bits (455), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 93/128 (72%), Positives = 107/128 (83%), Gaps = 4/128 (3%)

Query: 5   MGERVIDGDWKP--TSSSNGK--RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTK 60
           MG   I+ DW+   TS +NG+  RTVVL+GRTGNGKSATGNSILGRKAFK+ A SSGVT 
Sbjct: 1   MGGSAIEEDWELDLTSPTNGRSARTVVLVGRTGNGKSATGNSILGRKAFKSRACSSGVTV 60

Query: 61  TCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSR 120
           T E++TTVL DGQ ++VIDTPG+FD SAGS+FVGKEIVK I +AK GIHAVLVVFSVR+R
Sbjct: 61  TSELQTTVLSDGQEIDVIDTPGMFDFSAGSDFVGKEIVKCIDMAKDGIHAVLVVFSVRTR 120

Query: 121 FSQEEEAA 128
           FS EEEAA
Sbjct: 121 FSLEEEAA 128

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357470409|ref|XP_003605489.1| AIG1 [Medicago truncatula] gi|355506544|gb|AES87686.1| AIG1 [Medicago truncatula]

 Score =  176 bits (446), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 88/133 (66%), Positives = 102/133 (76%), Gaps = 9/133 (6%)

Query: 5   MGERVIDGDWKPTSS---------SNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADS 55
           MG   ++ DW+  SS         +N  RTVVL+GRTGNGKSATGNSILG+K FK+ A S
Sbjct: 1   MGGSYVEDDWELASSGSASEVQISANEARTVVLVGRTGNGKSATGNSILGKKVFKSRASS 60

Query: 56  SGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVF 115
           SGVT +CEM+T  L DGQ+VNVIDTPGLF+ SAGSEF+GKEIVK I  AK GIHA+LVV 
Sbjct: 61  SGVTSSCEMQTAELSDGQIVNVIDTPGLFEVSAGSEFIGKEIVKCIDFAKDGIHAILVVL 120

Query: 116 SVRSRFSQEEEAA 128
           SVRSRFS+EEE A
Sbjct: 121 SVRSRFSEEEENA 133

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	231
TAIR|locus:2140558	394	AT4G09940 [Arabidopsis thalian	0.454	0.266	0.533	6.6e-41
TAIR|locus:2140568	336	AT4G09950 [Arabidopsis thalian	0.484	0.333	0.483	4e-37
TAIR|locus:2203817	311	AT1G33950 [Arabidopsis thalian	0.467	0.347	0.546	1.2e-35
TAIR|locus:2203807	353	AIG1 "AVRRPT2-INDUCED GENE 1"	0.437	0.286	0.574	6.3e-35
TAIR|locus:2009041	342	AT1G33970 [Arabidopsis thalian	0.969	0.654	0.362	3.6e-34
TAIR|locus:2203832	336	AT1G33930 [Arabidopsis thalian	0.497	0.342	0.504	5.6e-34
TAIR|locus:2203797	326	AT1G33900 [Arabidopsis thalian	0.497	0.352	0.452	3e-33
TAIR|locus:2203792	301	AT1G33910 [Arabidopsis thalian	0.454	0.348	0.459	6.8e-30
TAIR|locus:2140548	335	AT4G09930 [Arabidopsis thalian	0.450	0.310	0.5	1.4e-29
TAIR|locus:2203827	252	AT1G33870 [Arabidopsis thalian	0.341	0.313	0.443	1.3e-25

TAIR|locus:2140558 AT4G09940 [Arabidopsis thaliana (taxid:3702)]

 Score = 285 (105.4 bits), Expect = 6.6e-41, Sum P(2) = 6.6e-41
 Identities = 56/105 (53%), Positives = 76/105 (72%)

Query:    24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 83
             RT++L+GR+GNGKSATGNSILGRKAFK+   +SGVT  CE++++ L +GQ++NVIDTPGL
Sbjct:    48 RTLLLVGRSGNGKSATGNSILGRKAFKSKGRASGVTTACELQSSTLPNGQIINVIDTPGL 107

Query:    84 FDSSAGSEFVGKEIVKRIGLAKGGIHAVLXXXXXXXXXXQEEEAA 128
             F  S  +EF  +EI++   L K GI AVL          +EE++A
Sbjct:   108 FSLSPSTEFTCREILRCFSLTKEGIDAVLLVFSLKNRLTEEEKSA 152

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2140568 AT4G09950 [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 4.0e-37, Sum P(2) = 4.0e-37
 Identities = 57/118 (48%), Positives = 80/118 (67%)

Query:    10 IDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVL 69
             ++ DWKP      +RT+VLLGRTGNGKSATGNSILG+  F++ A    +TK C++  + L
Sbjct:    10 VENDWKP------ERTLVLLGRTGNGKSATGNSILGKTMFQSKARGKFITKECKLHKSKL 63

Query:    70 KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLXXXXXXXXXXQEEEA 127
              +G  +NVIDTPGLF +S+ ++F  +EIV+ + LAKGGI AVL          +EE++
Sbjct:    64 PNGLTINVIDTPGLFSASSTTDFTIREIVRCLLLAKGGIDAVLLVFSLRNRLTEEEQS 121

GO:0005525 "GTP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2203817 AT1G33950 [Arabidopsis thaliana (taxid:3702)]

 Score = 301 (111.0 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
 Identities = 59/108 (54%), Positives = 74/108 (68%)

Query:    19 SSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVI 78
             SS     +VL+GRTGNGKSATGNS++G+K F + A +SGVT  C+    V KDG  +NVI
Sbjct:    12 SSKQAENIVLVGRTGNGKSATGNSLIGKKVFASKAHASGVTMKCQTHGVVTKDGHKINVI 71

Query:    79 DTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLXXXXXXXXXXQEEE 126
             DTPGLFD S  +E++ KEIV+ + LA+GGIHAVL          QEEE
Sbjct:    72 DTPGLFDLSVSAEYISKEIVRCLTLAEGGIHAVLLVLSARTRITQEEE 119

GO:0005525 "GTP binding" evidence=IEA

GO:0009617 "response to bacterium" evidence=ISS

TAIR|locus:2203807 AIG1 "AVRRPT2-INDUCED GENE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 288 (106.4 bits), Expect = 6.3e-35, Sum P(2) = 6.3e-35
 Identities = 58/101 (57%), Positives = 69/101 (68%)

Query:    26 VVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 85
             +VL+GRTGNGKSATGNSI+  K FK+   SSGVT  C     V  +G ++NVIDTPGLFD
Sbjct:    45 IVLVGRTGNGKSATGNSIVRSKVFKSKTKSSGVTMECHAVKAVTPEGPILNVIDTPGLFD 104

Query:    86 SSAGSEFVGKEIVKRIGLAKGGIHAVLXXXXXXXXXXQEEE 126
              S  +EF+GKEIVK + LA GG+HAVL          QEEE
Sbjct:   105 LSVSAEFIGKEIVKCLTLADGGLHAVLLVLSVRTRISQEEE 145

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009617 "response to bacterium" evidence=IEP;ISS

GO:0006897 "endocytosis" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

TAIR|locus:2009041 AT1G33970 [Arabidopsis thaliana (taxid:3702)]

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 84/232 (36%), Positives = 135/232 (58%)

Query:     5 MGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEM 64
             MG  +++ DW+  SSSN KRT+VL+GRTGNGKSATGNSILGRKAF++ A + GVT TCE 
Sbjct:     6 MGGDMMEDDWEFASSSNPKRTLVLVGRTGNGKSATGNSILGRKAFRSRARTVGVTSTCES 65

Query:    65 KTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLXXXXXXXXXXQE 124
             +  V +DG ++NV+DTPGLFD S  ++F+GKEIV+ I LA+ GIHA+L          +E
Sbjct:    66 QRVVQEDGDIINVVDTPGLFDLSTAADFIGKEIVRCISLAEDGIHAILLVFSVRRLAEEE 125

Query:   125 EEA-----ANGGQPYTDEFLAELKRGATELRDQQAEVDS-LKEYSKQEISKLMGQMQESY 178
             +       A  G    D ++  +  G  EL + +  ++  L +Y  + + +++G      
Sbjct:   126 QTVLSFLQALFGSKIAD-YMIVVFTGGDELEENEETLEEYLADYCPEFLKEILGICDNRL 184

Query:   179 EDQIKRITEMVE-SELKETTTRLEQQLAEEQAARLMAEEVAQLAQMKSTKFK 229
                  + T+ V+ +E  +    L + + ++   +  ++E+    Q ++ K +
Sbjct:   185 VLFNNKTTDKVKKAEQVQKLLSLVESVVKQNNGKPYSDELFHELQEEAIKLR 236

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2203832 AT1G33930 [Arabidopsis thaliana (taxid:3702)]

 Score = 290 (107.1 bits), Expect = 5.6e-34, Sum P(2) = 5.6e-34
 Identities = 58/115 (50%), Positives = 76/115 (66%)

Query:    14 WKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQ 73
             W+  S+S   + VVL+GRTGNGKSATGNSI+GRK F++   + GVT  C+    V  DG 
Sbjct:    26 WELPSASEPVKNVVLVGRTGNGKSATGNSIIGRKVFESKYQAVGVTTRCKTFRAVTPDGP 85

Query:    74 VVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLXXXXXXXXXXQEEEAA 128
             ++NVIDTPGLFD +  +EF+ KEIV  + LA+ G+HAV+          QEEE A
Sbjct:    86 IINVIDTPGLFDLAVSAEFISKEIVNCLILAREGLHAVVLVLSLSTRISQEEENA 140

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

TAIR|locus:2203797 AT1G33900 [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 3.0e-33, Sum P(2) = 3.0e-33
 Identities = 52/115 (45%), Positives = 75/115 (65%)

Query:    13 DWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG 72
             D +  S+S   + +VL+GRTGNGKSATGNS++G++ F++   ++GVT  CE    V   G
Sbjct:     9 DLRLPSASEPIKNIVLVGRTGNGKSATGNSLIGKQVFRSETRATGVTMKCETCVAVTPCG 68

Query:    73 QVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLXXXXXXXXXXQEEEA 127
               +NVIDTPGLFD S  +E++ +EI+  + LA+ G+HAV+          QEEEA
Sbjct:    69 TGINVIDTPGLFDLSVSAEYLSQEIINCLVLAEDGLHAVVLVLSVRTRISQEEEA 123

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2203792 AT1G33910 [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 6.8e-30, Sum P(2) = 6.8e-30
 Identities = 51/111 (45%), Positives = 71/111 (63%)

Query:    18 SSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNV 77
             S+S   R +VL+G TGNGKS+TGNS++G++ F          KTC+ KT    DGQ++NV
Sbjct:     8 SASEPVRNIVLVGPTGNGKSSTGNSLIGKEVFILETVEC---KTCKAKTL---DGQIINV 61

Query:    78 IDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLXXXXXXXXXXQEEEAA 128
             IDTPGLFD S  ++++ KEI+  + L  GG+HAV+          +EEEAA
Sbjct:    62 IDTPGLFDLSVSTDYMNKEIINCLTLTDGGLHAVVLVLSVGTDILKEEEAA 112

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

TAIR|locus:2140548 AT4G09930 [Arabidopsis thaliana (taxid:3702)]

 Score = 246 (91.7 bits), Expect = 1.4e-29, Sum P(2) = 1.4e-29
 Identities = 52/104 (50%), Positives = 70/104 (67%)

Query:    24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 83
             RT+VL+G +GNGKSATGNSIL  +AFK+   ++ VTK CE+K+T   +GQ++NVIDTPGL
Sbjct:    27 RTLVLIGCSGNGKSATGNSILRSEAFKSKGQAAAVTKECELKSTKRPNGQIINVIDTPGL 86

Query:    84 FDSSAGSEFVGKEIVKRIGLAKGGIHAVLXXXXXXXXXXQEEEA 127
             F     +E   +EI+K   LAK GI AVL          +EE++
Sbjct:    87 FSLFPSNESTIREILKCSHLAKEGIDAVLMVFSLRSRLTEEEKS 130

GO:0005525 "GTP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0006897 "endocytosis" evidence=RCA

TAIR|locus:2203827 AT1G33870 [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
 Identities = 35/79 (44%), Positives = 49/79 (62%)

Query:    49 FKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGI 108
             F +   + GVT  C M  T +KDG ++NVIDTPGLFDSS  + ++  EI+K + +A+GGI
Sbjct:     2 FTSELQAGGVTMECVMYRTAIKDGPIINVIDTPGLFDSSVSANYITTEILKCLTMAEGGI 61

Query:   109 HAVLXXXXXXXXXXQEEEA 127
             HA +          QEEE+
Sbjct:    62 HAFMFVLSAGNRITQEEES 80

GO:0005525 "GTP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0009617 "response to bacterium" evidence=ISS

GO:0045036 "protein targeting to chloroplast" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	231
pfam04548	211	pfam04548, AIG1, AIG1 family	4e-47
cd01852	201	cd01852, AIG1, AvrRpt2-Induced Gene 1 (AIG1)	8e-45
cd01853	248	cd01853, Toc34_like, Translocon at the Outer-envel	4e-12
cd00880	161	cd00880, Era_like, E	3e-08
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	2e-07
TIGR00993	763	TIGR00993, 3a0901s04IAP86, chloroplast protein imp	4e-07
pfam01926	117	pfam01926, MMR_HSR1, 50S ribosome-binding GTPase	8e-07
TIGR00991	313	TIGR00991, 3a0901s02IAP34, GTP-binding protein (Ch	1e-05
cd09912	180	cd09912, DLP_2, Dynamin-like protein including dyn	8e-05
COG1160	444	COG1160, COG1160, Predicted GTPases [General funct	2e-04
PRK01889	356	PRK01889, PRK01889, GTPase RsgA; Reviewed	6e-04
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	0.002
COG0370	653	COG0370, FeoB, Fe2+ transport system protein B [In	0.002
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	0.003

>gnl|CDD|218141 pfam04548, AIG1, AIG1 family

 Score =  154 bits (392), Expect = 4e-47
 Identities = 59/105 (56%), Positives = 82/105 (78%), Gaps = 2/105 (1%)

Query: 24  RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 83
             +VL+G+TGNGKSATGNSILGRKAF++   + GVTKTC++ +    DG+++NVIDTPGL
Sbjct: 1   LRIVLVGKTGNGKSATGNSILGRKAFESKLRAQGVTKTCQLVSRTW-DGRIINVIDTPGL 59

Query: 84  FDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEAA 128
           FD S  ++F+ KEI++ + LA+ G HAVL+V S+  RF++EEE A
Sbjct: 60  FDLSVSNDFISKEIIRCLLLAEPGPHAVLLVLSLG-RFTEEEEQA 103

Arabidopsis protein AIG1 appears to be involved in plant resistance to bacteria. Length = 211

>gnl|CDD|206651 cd01852, AIG1, AvrRpt2-Induced Gene 1 (AIG1)

 Score =  148 bits (375), Expect = 8e-45
 Identities = 57/105 (54%), Positives = 78/105 (74%), Gaps = 2/105 (1%)

Query: 24  RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 83
             +VL+G+TGNGKSATGN+ILGRK F++   +SGVTKTC+ ++ V  DG+ VNVIDTPGL
Sbjct: 1   LRLVLVGKTGNGKSATGNTILGRKVFESKLSASGVTKTCQKESAVW-DGRRVNVIDTPGL 59

Query: 84  FDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEAA 128
           FD+S   E + KEI++ + L+  G HA L+V  +  RF++EEE A
Sbjct: 60  FDTSVSPEQLSKEIIRCLSLSAPGPHAFLLVVPLG-RFTEEEEQA 103

This group represents Arabidoposis protein AIG1 (avrRpt2-induced gene 1) that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). Length = 201

>gnl|CDD|206652 cd01853, Toc34_like, Translocon at the Outer-envelope membrane of Chloroplasts 34-like (Toc34-like)

 Score = 63.5 bits (155), Expect = 4e-12
 Identities = 39/93 (41%), Positives = 52/93 (55%), Gaps = 8/93 (8%)

Query: 25  TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 84
           T+++LG+TG GKS+T NSI G +    SA  S   +  E+  TV  DG  +N+IDTPGL 
Sbjct: 33  TILVLGKTGVGKSSTINSIFGERKVSVSAFQSETLRPREVSRTV--DGFKLNIIDTPGLL 90

Query: 85  DSSAGSEFVGK---EIVKRIGLAKGGIHAVLVV 114
           +S      V +    I+KR  L K  I  VL V
Sbjct: 91  ESQDQR--VNRKILSIIKRF-LKKKTIDVVLYV 120

The Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. Length = 248

>gnl|CDD|206646 cd00880, Era_like, E

 Score = 51.1 bits (123), Expect = 3e-08
 Identities = 29/103 (28%), Positives = 41/103 (39%), Gaps = 7/103 (6%)

Query: 27  VLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDS 86
            + GR   GKS+  N++LG+     S    G T+    K   L     V +IDTPGL + 
Sbjct: 1   AIFGRPNVGKSSLLNALLGQNVGIVS-PIPGTTRDPVRKEWELLPLGPVVLIDTPGLDEE 59

Query: 87  SAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEAAN 129
                   +E  +          A LV+  V S  +  EE A 
Sbjct: 60  GGLGRERVEEARQVAD------RADLVLLVVDSDLTPVEEEAK 96

coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 49.0 bits (117), Expect = 2e-07
 Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 8/101 (7%)

Query: 27  VLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQV-VNVIDTPGLFD 85
           V++GR G GKS+  N++LG +  + S D  G T+  ++    L  G+V + ++DTPGL +
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVS-DVPGTTRDPDVYVKELDKGKVKLVLVDTPGLDE 59

Query: 86  SSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEE 126
                 F G    +   L   G   +L+V     R S+E+ 
Sbjct: 60  ------FGGLGREELARLLLRGADLILLVVDSTDRESEEDA 94

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|233224 TIGR00993, 3a0901s04IAP86, chloroplast protein import component Toc86/159, G and M domains

 Score = 49.6 bits (118), Expect = 4e-07
 Identities = 27/62 (43%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query: 25  TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 84
            +++LG++G GKSAT NSI G   F   A   G T   E++  V   G  + VIDTPGL 
Sbjct: 120 NILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLV--QGVKIRVIDTPGLK 177

Query: 85  DS 86
            S
Sbjct: 178 SS 179

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M [Transport and binding proteins, Amino acids, peptides and amines]. Length = 763

>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase

 Score = 46.1 bits (110), Expect = 8e-07
 Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 5/102 (4%)

Query: 25  TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 84
            V L+GR   GKS   N++ G K    S D  G T+  +    VL  G+ + ++DTPGL 
Sbjct: 1   RVALVGRPNVGKSTLINALTGAKVAIVS-DYPGTTR--DPILGVLGLGRQIILVDTPGLI 57

Query: 85  DSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEE 126
           + ++  + V  E   R   A      +L+V       ++++E
Sbjct: 58  EGASEGKGV--EGFNRFLEAIREADLILLVVDASEGLTEDDE 97

The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117

>gnl|CDD|130064 TIGR00991, 3a0901s02IAP34, GTP-binding protein (Chloroplast Envelope Protein Translocase)

 Score = 44.9 bits (106), Expect = 1e-05
 Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 5/82 (6%)

Query: 25  TVVLLGRTGNGKSATGNSILGRKAFKASA-DSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 83
           T++++G+ G GKS+T NSI+G +    SA  S G+      +T   + G  +N+IDTPGL
Sbjct: 40  TILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRT---RAGFTLNIIDTPGL 96

Query: 84  FDSSAGSEFVGKEIVKRIGLAK 105
            +    ++     I+KR  L K
Sbjct: 97  IEGGYIND-QAVNIIKRFLLGK 117

[Transport and binding proteins, Nucleosides, purines and pyrimidines]. Length = 313

>gnl|CDD|206739 cd09912, DLP_2, Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins

 Score = 41.4 bits (98), Expect = 8e-05
 Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 27/122 (22%)

Query: 25  TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTV---LKDGQVVNVIDTP 81
            + ++G    GKS   N++LG +        +GVT T  + T +   L  G  V ++DTP
Sbjct: 2   LLAVVGEFSAGKSTLLNALLGEEVLP-----TGVTPTTAVITVLRYGLLKG--VVLVDTP 54

Query: 82  GLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEAANGGQPYTDEFLAE 141
           GL  +      + +  + R         AV+ V S     ++ E           EFL E
Sbjct: 55  GLNSTIEHHTEITESFLPR-------ADAVIFVLSADQPLTESER----------EFLKE 97

Query: 142 LK 143
           + 
Sbjct: 98  IL 99

The dynamin family of large mechanochemical GTPases includes the classical dynamins and dynamin-like proteins (DLPs) that are found throughout the Eukarya. This family also includes bacterial DLPs. These proteins catalyze membrane fission during clathrin-mediated endocytosis. Dynamin consists of five domains; an N-terminal G domain that binds and hydrolyzes GTP, a middle domain (MD) involved in self-assembly and oligomerization, a pleckstrin homology (PH) domain responsible for interactions with the plasma membrane, GED, which is also involved in self-assembly, and a proline arginine rich domain (PRD) that interacts with SH3 domains on accessory proteins. To date, three vertebrate dynamin genes have been identified; dynamin 1, which is brain specific, mediates uptake of synaptic vesicles in presynaptic terminals; dynamin-2 is expressed ubiquitously and similarly participates in membrane fission; mutations in the MD, PH and GED domains of dynamin 2 have been linked to human diseases such as Charcot-Marie-Tooth peripheral neuropathy and rare forms of centronuclear myopathy. Dynamin 3 participates in megakaryocyte progenitor amplification, and is also involved in cytoplasmic enlargement and the formation of the demarcation membrane system. This family also includes mitofusins (MFN1 and MFN2 in mammals) that are involved in mitochondrial fusion. Dynamin oligomerizes into helical structures around the neck of budding vesicles in a GTP hydrolysis-dependent manner. Length = 180

>gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only]

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 16/112 (14%)

Query: 21  NGKRTVVLLGRTGNGKSATGNSILGRKAFKA-SADSSGVT-----KTCEMKTTVLKDGQV 74
                V ++GR   GKS   N + GR+   A  +D+ GVT        E        G+ 
Sbjct: 1   MSTPVVAIVGRPNVGKSTLFNRLTGRR--IAIVSDTPGVTRDRIYGDAEW------LGRE 52

Query: 75  VNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEE 126
             +IDT GL D     + + + I ++  +A      +L V   R   +  +E
Sbjct: 53  FILIDTGGLDDGDE--DELQELIREQALIAIEEADVILFVVDGREGITPADE 102

Length = 444

>gnl|CDD|234988 PRK01889, PRK01889, GTPase RsgA; Reviewed

 Score = 39.9 bits (94), Expect = 6e-04
 Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 15/80 (18%)

Query: 21  NGKRTVVLLGRTGNGKSATGNSILGRKAFKASA----DSSG--VTKTCEMKTTVLKDGQV 74
           +G +TV LLG +G GKS   N++LG +  K  A    DS G   T   E+    L  G +
Sbjct: 193 SGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELH--PLPSGGL 250

Query: 75  VNVIDTPG-----LFDSSAG 89
             +IDTPG     L+D+  G
Sbjct: 251 --LIDTPGMRELQLWDAEDG 268

Length = 356

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 26 VVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQ--VVNVIDTPG 82
          +V++G    GKS   N +LG K         G T+     T + +DG+    N++DT G
Sbjct: 4  IVIVGDPNVGKSTLLNRLLGNKISITEYK-PGTTRNYVT-TVIEEDGKTYKFNLLDTAG 60

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|223447 COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 8/93 (8%)

Query: 23  KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKD-GQVVNVIDTP 81
           K TV L+G    GK+   N++ G  A +   +  GVT   E K   LK  G  + ++D P
Sbjct: 3   KLTVALVGNPNVGKTTLFNALTG--ANQKVGNWPGVT--VEKKEGKLKYKGHEIEIVDLP 58

Query: 82  GLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVV 114
           G +  +A SE    E V R  L +G    ++ V
Sbjct: 59  GTYSLTAYSE---DEKVARDFLLEGKPDLIVNV 88

Length = 653

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 37.4 bits (87), Expect = 0.003
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 14/103 (13%)

Query: 26  VVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 85
           VVLLG +G GKS+  N         ++ ++SG   T E   +V  +   + V D     D
Sbjct: 3   VVLLGDSGVGKSSLANIFTAGVYEDSAYEASG-DDTYERTVSVDGEEATLVVYDHWEQED 61

Query: 86  SSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSV--RSRFSQEEE 126
                +   +              A ++V+SV  RS F +  E
Sbjct: 62  GMWLEDSCMQV-----------GDAYVIVYSVTDRSSFEKASE 93

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	231
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.85
COG1160	444	Predicted GTPases [General function prediction onl	99.84
COG1159	298	Era GTPase [General function prediction only]	99.83
COG1160	444	Predicted GTPases [General function prediction onl	99.82
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.79
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.79
COG0486	454	ThdF Predicted GTPase [General function prediction	99.78
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.77
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.69
PRK15494	339	era GTPase Era; Provisional	99.69
PRK00093	435	GTP-binding protein Der; Reviewed	99.68
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.65
COG2262	411	HflX GTPases [General function prediction only]	99.65
PRK03003	472	GTP-binding protein Der; Reviewed	99.65
PRK00089	292	era GTPase Era; Reviewed	99.64
PRK12298	390	obgE GTPase CgtA; Reviewed	99.63
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.62
PRK12299	335	obgE GTPase CgtA; Reviewed	99.62
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.62
COG0218	200	Predicted GTPase [General function prediction only	99.62
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.62
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.61
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.6
COG0488	530	Uup ATPase components of ABC transporters with dup	99.6
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.6
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.6
PRK12296	500	obgE GTPase CgtA; Reviewed	99.6
PRK03003	472	GTP-binding protein Der; Reviewed	99.59
PRK12297	424	obgE GTPase CgtA; Reviewed	99.59
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.59
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.58
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.57
PRK11058	426	GTPase HflX; Provisional	99.57
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.56
PRK00093	435	GTP-binding protein Der; Reviewed	99.55
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.54
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.53
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.53
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.53
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.52
COG0536	369	Obg Predicted GTPase [General function prediction	99.52
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.5
COG1084	346	Predicted GTPase [General function prediction only	99.48
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.48
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.48
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.48
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.47
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.47
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.47
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.46
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.46
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.44
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.44
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.44
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.43
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.43
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.43
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.43
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.43
COG1163	365	DRG Predicted GTPase [General function prediction	99.42
PRK04213	201	GTP-binding protein; Provisional	99.41
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.41
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.41
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.41
PTZ00258	390	GTP-binding protein; Provisional	99.41
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.41
PRK09601	364	GTP-binding protein YchF; Reviewed	99.4
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.4
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.38
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.38
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.37
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.37
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.37
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.36
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.36
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.35
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.35
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.35
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.35
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.35
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.34
cd00881	189	GTP_translation_factor GTP translation factor fami	99.34
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.34
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.34
KOG0410	410	consensus Predicted GTP binding protein [General f	99.34
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.34
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.34
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.33
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.33
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.33
COG3596	296	Predicted GTPase [General function prediction only	99.33
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.33
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.32
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.32
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.32
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.31
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.31
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.31
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.31
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.3
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.3
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.3
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.3
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.3
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.3
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.3
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.3
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.3
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.29
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.29
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.29
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.29
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.29
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.29
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.29
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.28
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.28
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.28
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.28
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.28
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.28
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.27
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.27
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.27
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.27
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.27
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.27
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.27
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.27
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.27
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.27
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.27
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.27
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.26
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.26
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.26
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.26
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.26
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.26
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.26
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.26
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.26
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.26
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.26
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.26
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.26
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.25
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.25
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.25
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.25
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.25
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.25
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.25
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.25
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.25
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.24
PRK09602	396	translation-associated GTPase; Reviewed	99.24
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.24
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.24
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.24
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.24
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.24
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.23
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.23
COG5019	373	CDC3 Septin family protein [Cell division and chro	99.23
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.23
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.23
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.23
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.23
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.23
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.23
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.23
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.23
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.22
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.22
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.22
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.22
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.22
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.22
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.22
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.22
PRK10908	222	cell division protein FtsE; Provisional	99.22
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.21
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	99.21
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.21
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.21
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.21
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.21
cd03246	173	ABCC_Protease_Secretion This family represents the	99.21
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.21
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.21
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.21
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.21
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.21
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	99.21
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.21
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.21
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.21
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	99.21
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.21
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.21
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.2
PRK05306	787	infB translation initiation factor IF-2; Validated	99.2
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.2
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.2
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.2
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.2
CHL00071	409	tufA elongation factor Tu	99.2
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.2
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.2
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.2
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.2
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.2
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.2
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.2
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.2
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.19
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.19
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.19
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.19
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.19
CHL00189	742	infB translation initiation factor 2; Provisional	99.19
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.19
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.19
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.19
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.19
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.19
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.19
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.19
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.19
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.18
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.18
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.18
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.18
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.18
PTZ00133	182	ADP-ribosylation factor; Provisional	99.18
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.18
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.18
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.18
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.18
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.18
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.18
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.18
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.17
PLN00223	181	ADP-ribosylation factor; Provisional	99.17
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.17
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.17
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.17
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.17
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.17
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.17
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.17
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.17
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.17
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	99.16
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.16
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.16
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.16
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.16
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.16
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.16
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.16
PRK12317	425	elongation factor 1-alpha; Reviewed	99.16
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.16
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.16
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.16
PLN03110	216	Rab GTPase; Provisional	99.16
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.16
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.16
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.16
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.15
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.15
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.15
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.15
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.15
COG0012	372	Predicted GTPase, probable translation factor [Tra	99.14
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.14
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.14
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.14
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.14
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.14
PTZ00369	189	Ras-like protein; Provisional	99.14
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.14
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.14
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.14
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.14
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.13
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.13
PLN03118	211	Rab family protein; Provisional	99.13
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.13
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.13
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.13
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.13
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.13
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.13
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.12
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.12
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.12
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	99.12
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.12
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.12
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.12
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.12
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.12
PRK12736	394	elongation factor Tu; Reviewed	99.12
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.12
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.12
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.11
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.11
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.11
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.11
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.11
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.11
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.11
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.11
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.11
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.11
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.11
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.11
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.1
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.1
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.1
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.1
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.1
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.1
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.09
PRK00049	396	elongation factor Tu; Reviewed	99.09
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.09
PRK09866	741	hypothetical protein; Provisional	99.09
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.09
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.09
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.09
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.09
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.09
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.09
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.09
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.08
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.08
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.08
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.08
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.08
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.08
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.08
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.08
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.08
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.08
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.07
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.07
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.07
PRK12735	396	elongation factor Tu; Reviewed	99.07
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.07
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.07
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.07
PLN03108	210	Rab family protein; Provisional	99.07
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.07
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.07
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.07
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.06
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.06
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.06
COG4559	259	ABC-type hemin transport system, ATPase component	99.06
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.06
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.06
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.06
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.06
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.06
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.06
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.06
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.06
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.05
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.05
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.05
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.05
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.05
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.05
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.05
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.05
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.05
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.05
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.05
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.05
PLN03211	659	ABC transporter G-25; Provisional	99.05
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.04
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.04
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.04
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.04
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.04
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.04
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.04
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.04
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	99.04
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.04
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.04
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.03
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.03
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.03
PRK11147	635	ABC transporter ATPase component; Reviewed	99.03
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.03
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.03
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.03
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.03
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.02
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	99.02
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.02
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.02
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.02
PRK09563	287	rbgA GTPase YlqF; Reviewed	99.01
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.01
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.01
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.01
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.01
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	99.01
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.0
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.0
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.0
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.0
PRK11147	635	ABC transporter ATPase component; Reviewed	99.0
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.0
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.0
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.0
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.0
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.0
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.0
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	98.99
COG4619	223	ABC-type uncharacterized transport system, ATPase	98.99
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	98.99
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	98.99
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	98.99
PRK10938	490	putative molybdenum transport ATP-binding protein	98.98
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	98.98
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.98
TIGR00485	394	EF-Tu translation elongation factor TU. This align	98.98
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	98.98
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	98.98
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	98.98
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	98.98
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	98.98
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	98.98
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	98.97
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	98.97
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	98.97
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	98.97
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	98.97
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	98.97
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	98.96
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	98.96
PRK10218	607	GTP-binding protein; Provisional	98.96
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.96
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	98.96
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	98.96
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	98.96
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	98.96
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	98.96
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	98.96
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	98.95
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	98.95
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	98.95
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	98.95
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	98.95
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	98.95
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	98.95
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	98.95
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	98.94
PRK05433	600	GTP-binding protein LepA; Provisional	98.94
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	98.94
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	98.94
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	98.94
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.94
PLN03127	447	Elongation factor Tu; Provisional	98.93
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	98.93
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	98.93
COG1161	322	Predicted GTPases [General function prediction onl	98.93
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	98.93
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	98.93
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	98.93
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.93
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	98.93
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	98.92
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	98.92
PRK04004	586	translation initiation factor IF-2; Validated	98.92
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	98.92
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	98.92
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.92
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	98.92
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	98.91
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	98.91
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	98.9
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	98.9
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	98.9
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	98.9
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	98.9
COG4674	249	Uncharacterized ABC-type transport system, ATPase	98.9
PRK10261	623	glutathione transporter ATP-binding protein; Provi	98.89
PRK12289	352	GTPase RsgA; Reviewed	98.89
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	98.89
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	98.89
COG4988	559	CydD ABC-type transport system involved in cytochr	98.89
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	98.89
PRK00098	298	GTPase RsgA; Reviewed	98.89
PRK10261	623	glutathione transporter ATP-binding protein; Provi	98.89

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.85  E-value=2.9e-21  Score=144.47  Aligned_cols=142  Identities=20%  Similarity=0.265  Sum_probs=97.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhh
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLA  104 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~  104 (231)
                      +|+|+|+||+|||||||+|+|.....+  +++|+|++...+.... .+..+.++|+||+|+.....  ..+.+...+. .
T Consensus         2 ~ialvG~PNvGKStLfN~Ltg~~~~v~--n~pG~Tv~~~~g~~~~-~~~~~~lvDlPG~ysl~~~s--~ee~v~~~~l-~   75 (156)
T PF02421_consen    2 RIALVGNPNVGKSTLFNALTGAKQKVG--NWPGTTVEKKEGIFKL-GDQQVELVDLPGIYSLSSKS--EEERVARDYL-L   75 (156)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTSEEEE--ESTTSSSEEEEEEEEE-TTEEEEEEE----SSSSSSS--HHHHHHHHHH-H
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCceec--CCCCCCeeeeeEEEEe-cCceEEEEECCCcccCCCCC--cHHHHHHHHH-h
Confidence            699999999999999999999996543  6899999988877777 78999999999998754322  1222222222 2


Q ss_pred             cCCccEEEEEEECCCCCCHHHHH----hcCCCCcHHHHHHHHH---hhH-----HHHHhhcc-chhhhhhhhHhhHHHHH
Q 038053          105 KGGIHAVLVVFSVRSRFSQEEEA----ANGGQPYTDEFLAELK---RGA-----TELRDQQA-EVDSLKEYSKQEISKLM  171 (231)
Q Consensus       105 ~~~~~~il~vvd~~~~~~~~~~~----~~~~~~~~~~~~~~~~---~~~-----~~l~~~~~-~i~~is~~~~~~i~~l~  171 (231)
                      ...+|+++.|+|++ .+......    ...+.|.+ .+++++|   +.+     +.|.+.++ |++++|+.++.|+++|+
T Consensus        76 ~~~~D~ii~VvDa~-~l~r~l~l~~ql~e~g~P~v-vvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~L~  153 (156)
T PF02421_consen   76 SEKPDLIIVVVDAT-NLERNLYLTLQLLELGIPVV-VVLNKMDEAERKGIEIDAEKLSERLGVPVIPVSARTGEGIDELK  153 (156)
T ss_dssp             HTSSSEEEEEEEGG-GHHHHHHHHHHHHHTTSSEE-EEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHH
T ss_pred             hcCCCEEEEECCCC-CHHHHHHHHHHHHHcCCCEE-EEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEEeCCCcCHHHHH
Confidence            47899999999998 44332221    44556655 2233333   222     56777776 99999999999999998


Q ss_pred             HHH
Q 038053          172 GQM  174 (231)
Q Consensus       172 ~~i  174 (231)
                      ++|
T Consensus       154 ~~I  156 (156)
T PF02421_consen  154 DAI  156 (156)
T ss_dssp             HHH
T ss_pred             hhC
Confidence            875

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.84  E-value=7.1e-21  Score=161.05  Aligned_cols=150  Identities=21%  Similarity=0.246  Sum_probs=121.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      +.|+|||+||+|||||||.|+|...+.+ .+.+|+|++..+....| .+..+.++||+|+.+..  .+.+...+......
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV-~D~pGvTRDr~y~~~~~-~~~~f~lIDTgGl~~~~--~~~l~~~i~~Qa~~   79 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIV-SDTPGVTRDRIYGDAEW-LGREFILIDTGGLDDGD--EDELQELIREQALI   79 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEe-ecCCCCccCCccceeEE-cCceEEEEECCCCCcCC--chHHHHHHHHHHHH
Confidence            5899999999999999999999998887 58999999999999999 78889999999998632  24577778888888


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhhH-----HHHHh-hccchhhhhhhhHhhHHHHHH
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRGA-----TELRD-QQAEVDSLKEYSKQEISKLMG  172 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-----~~l~~-~~~~i~~is~~~~~~i~~l~~  172 (231)
                      ++..+|++++|+|..+++++.|..     ....+|.+ .++|+++...     .++.+ .+..++++||.+|.|+..|++
T Consensus        80 Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpvi-LvvNK~D~~~~e~~~~efyslG~g~~~~ISA~Hg~Gi~dLld  158 (444)
T COG1160          80 AIEEADVILFVVDGREGITPADEEIAKILRRSKKPVI-LVVNKIDNLKAEELAYEFYSLGFGEPVPISAEHGRGIGDLLD  158 (444)
T ss_pred             HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEE-EEEEcccCchhhhhHHHHHhcCCCCceEeehhhccCHHHHHH
Confidence            889999999999999999999977     33335554 5566665321     12222 234788899999999999999


Q ss_pred             HHHHHH
Q 038053          173 QMQESY  178 (231)
Q Consensus       173 ~i~~~~  178 (231)
                      .+.+.+
T Consensus       159 ~v~~~l  164 (444)
T COG1160         159 AVLELL  164 (444)
T ss_pred             HHHhhc
Confidence            998864

>COG1159 Era GTPase [General function prediction only]

Probab=99.83  E-value=1.2e-19  Score=146.13  Aligned_cols=150  Identities=18%  Similarity=0.270  Sum_probs=111.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhh
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLA  104 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~  104 (231)
                      .|++||+||+|||||+|.|+|...+..+ ..+++|+..-.+.... ....++++||||++...   ..+++.+.+.+..+
T Consensus         8 fVaIiGrPNvGKSTLlN~l~G~KisIvS-~k~QTTR~~I~GI~t~-~~~QiIfvDTPGih~pk---~~l~~~m~~~a~~s   82 (298)
T COG1159           8 FVAIIGRPNVGKSTLLNALVGQKISIVS-PKPQTTRNRIRGIVTT-DNAQIIFVDTPGIHKPK---HALGELMNKAARSA   82 (298)
T ss_pred             EEEEEcCCCCcHHHHHHHHhcCceEeec-CCcchhhhheeEEEEc-CCceEEEEeCCCCCCcc---hHHHHHHHHHHHHH
Confidence            8999999999999999999999987763 5666666555554444 68889999999999753   66788888888899


Q ss_pred             cCCccEEEEEEECCCCCCHHHHH----hcC-CCCcHHHHHHHHHhhH---------HHHHhhcc--chhhhhhhhHhhHH
Q 038053          105 KGGIHAVLVVFSVRSRFSQEEEA----ANG-GQPYTDEFLAELKRGA---------TELRDQQA--EVDSLKEYSKQEIS  168 (231)
Q Consensus       105 ~~~~~~il~vvd~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~---------~~l~~~~~--~i~~is~~~~~~i~  168 (231)
                      +..+|++++++|+...|...|..    ... ..|.+ .++++++.-.         +.+....+  .++++||.+|.+++
T Consensus        83 l~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvi-l~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~  161 (298)
T COG1159          83 LKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVI-LVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNVD  161 (298)
T ss_pred             hccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeE-EEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCCHH
Confidence            99999999999999779988876    111 12332 2233333110         12222222  78999999999999


Q ss_pred             HHHHHHHHHHHH
Q 038053          169 KLMGQMQESYED  180 (231)
Q Consensus       169 ~l~~~i~~~~~~  180 (231)
                      .|.+.+.+.+.+
T Consensus       162 ~L~~~i~~~Lpe  173 (298)
T COG1159         162 TLLEIIKEYLPE  173 (298)
T ss_pred             HHHHHHHHhCCC
Confidence            999999886543

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.82  E-value=4.5e-20  Score=156.24  Aligned_cols=173  Identities=24%  Similarity=0.302  Sum_probs=131.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      +.+|||||+||+|||||+|+|+|+.....+ +.+|+|++......++ +++.+.++||.|+.......+.+...-.....
T Consensus       178 ~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~-~~aGTTRD~I~~~~e~-~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~  255 (444)
T COG1160         178 PIKIAIIGRPNVGKSSLINAILGEERVIVS-DIAGTTRDSIDIEFER-DGRKYVLIDTAGIRRKGKITESVEKYSVARTL  255 (444)
T ss_pred             ceEEEEEeCCCCCchHHHHHhccCceEEec-CCCCccccceeeeEEE-CCeEEEEEECCCCCcccccccceEEEeehhhH
Confidence            489999999999999999999999988874 7889999887777776 89999999999998765554433333233334


Q ss_pred             hhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcH-----HHHHHHH--H-hhH-HHHHhhcc-----chhhhhhhh
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYT-----DEFLAEL--K-RGA-TELRDQQA-----EVDSLKEYS  163 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~-----~~~~~~~--~-~~~-~~l~~~~~-----~i~~is~~~  163 (231)
                      .+...++++++|+|++.+++.+|..     ...+++.+     |+++.+.  . ... ..|...++     +++++||.+
T Consensus       256 ~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~  335 (444)
T COG1160         256 KAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALT  335 (444)
T ss_pred             hHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecC
Confidence            5568899999999999999999987     33344433     4443321  0 001 24444443     899999999


Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 038053          164 KQEISKLMGQMQESYEDQIKRITE-MVESELKETT  197 (231)
Q Consensus       164 ~~~i~~l~~~i~~~~~~~~~~~~~-~~~~~~~~~~  197 (231)
                      |.++..+++.+...|+.+..++.+ .+++.++.+.
T Consensus       336 ~~~i~~l~~~i~~~~~~~~~ri~Ts~LN~~l~~a~  370 (444)
T COG1160         336 GQGLDKLFEAIKEIYECATRRISTSLLNRVLEDAV  370 (444)
T ss_pred             CCChHHHHHHHHHHHHHhccccCHHHHHHHHHHHH
Confidence            999999999999999999988886 6677776553

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.79  E-value=6.8e-19  Score=138.02  Aligned_cols=102  Identities=52%  Similarity=0.826  Sum_probs=82.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+|+|++|+|||||+|+|+|...+.++....++|..++.....+ .+..+.++||||+++.....+.+..++..++..
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~-~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~   79 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW-DGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSL   79 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE-CCeEEEEEECcCCCCccCChHHHHHHHHHHHHh
Confidence            3799999999999999999999988766545667888777776666 788999999999998654445566677777777


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA  127 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~  127 (231)
                      +.+.+|++++|+++.. ++..+..
T Consensus        80 ~~~g~~~illVi~~~~-~t~~d~~  102 (196)
T cd01852          80 SAPGPHAFLLVVPLGR-FTEEEEQ  102 (196)
T ss_pred             cCCCCEEEEEEEECCC-cCHHHHH
Confidence            7789999999999984 7777654

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.79  E-value=2.5e-18  Score=136.38  Aligned_cols=102  Identities=43%  Similarity=0.745  Sum_probs=78.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+|+|++||||||++|+|+|...+..+....++|..+......+ .+..+.|+|||||++.....+.+..++..++..
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~-~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~   79 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEV-DGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSL   79 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEE-TTEEEEEEE--SSEETTEEHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeee-cceEEEEEeCCCCCCCcccHHHHHHHHHHHHHh
Confidence            4799999999999999999999998877655667787777776666 899999999999998776666677778888777


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA  127 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~  127 (231)
                      ..+++|++++|+++. +++..+..
T Consensus        80 ~~~g~ha~llVi~~~-r~t~~~~~  102 (212)
T PF04548_consen   80 CSPGPHAFLLVIPLG-RFTEEDRE  102 (212)
T ss_dssp             TTT-ESEEEEEEETT-B-SHHHHH
T ss_pred             ccCCCeEEEEEEecC-cchHHHHH
Confidence            778999999999999 99988866

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.78  E-value=2.2e-18  Score=146.41  Aligned_cols=156  Identities=21%  Similarity=0.279  Sum_probs=117.8

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHH
Q 038053           18 SSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEI   97 (231)
Q Consensus        18 i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~   97 (231)
                      +..|  ..++|+|+||+|||||+|+|++.+.+++ .+.+|+|++.-...... ++..+.++||.|+..+.   +.+.+.-
T Consensus       214 lr~G--~kvvIiG~PNvGKSSLLNaL~~~d~AIV-TdI~GTTRDviee~i~i-~G~pv~l~DTAGiRet~---d~VE~iG  286 (454)
T COG0486         214 LREG--LKVVIIGRPNVGKSSLLNALLGRDRAIV-TDIAGTTRDVIEEDINL-NGIPVRLVDTAGIRETD---DVVERIG  286 (454)
T ss_pred             hhcC--ceEEEECCCCCcHHHHHHHHhcCCceEe-cCCCCCccceEEEEEEE-CCEEEEEEecCCcccCc---cHHHHHH
Confidence            3467  9999999999999999999999999888 48899999987777777 99999999999999754   3444444


Q ss_pred             HHHHhhhcCCccEEEEEEECCCCCCHHHHH----hcCCCCcHHHHHHHHHhhH----HHHHhhcc-chhhhhhhhHhhHH
Q 038053           98 VKRIGLAKGGIHAVLVVFSVRSRFSQEEEA----ANGGQPYTDEFLAELKRGA----TELRDQQA-EVDSLKEYSKQEIS  168 (231)
Q Consensus        98 ~~~~~~~~~~~~~il~vvd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~----~~l~~~~~-~i~~is~~~~~~i~  168 (231)
                      ..........+|.+++++|++..++..+..    .....+++ .+.|+.|-..    ..++.... ++..+|+++++|++
T Consensus       287 IeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~~~~~~~i-~v~NK~DL~~~~~~~~~~~~~~~~~i~iSa~t~~Gl~  365 (454)
T COG0486         287 IERAKKAIEEADLVLFVLDASQPLDKEDLALIELLPKKKPII-VVLNKADLVSKIELESEKLANGDAIISISAKTGEGLD  365 (454)
T ss_pred             HHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHHhcccCCCEE-EEEechhcccccccchhhccCCCceEEEEecCccCHH
Confidence            555566678999999999999666776655    22233443 4556655211    11111111 57889999999999


Q ss_pred             HHHHHHHHHHHHH
Q 038053          169 KLMGQMQESYEDQ  181 (231)
Q Consensus       169 ~l~~~i~~~~~~~  181 (231)
                      .|.+++.+.+...
T Consensus       366 ~L~~~i~~~~~~~  378 (454)
T COG0486         366 ALREAIKQLFGKG  378 (454)
T ss_pred             HHHHHHHHHHhhc
Confidence            9999999987766

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.77  E-value=3e-18  Score=151.27  Aligned_cols=151  Identities=19%  Similarity=0.231  Sum_probs=110.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      ..|+++|+||+|||||+|+|+|.....+  +++|+|++...+.... ++..+.++|.||.|+-...  ..++.+.+.+..
T Consensus         4 ~~valvGNPNvGKTtlFN~LTG~~q~Vg--NwpGvTVEkkeg~~~~-~~~~i~ivDLPG~YSL~~~--S~DE~Var~~ll   78 (653)
T COG0370           4 LTVALVGNPNVGKTTLFNALTGANQKVG--NWPGVTVEKKEGKLKY-KGHEIEIVDLPGTYSLTAY--SEDEKVARDFLL   78 (653)
T ss_pred             ceEEEecCCCccHHHHHHHHhccCceec--CCCCeeEEEEEEEEEe-cCceEEEEeCCCcCCCCCC--CchHHHHHHHHh
Confidence            5799999999999999999999998765  7999999998888877 7778999999999975432  122333333222


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH----hcCCCCcH--HHHHHHHHhhH-----HHHHhhcc-chhhhhhhhHhhHHHHH
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA----ANGGQPYT--DEFLAELKRGA-----TELRDQQA-EVDSLKEYSKQEISKLM  171 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~----~~~~~~~~--~~~~~~~~~~~-----~~l~~~~~-~i~~is~~~~~~i~~l~  171 (231)
                       ...+|+++.|+|++ .+...-+-    .+.+.|++  ..+++.+++.+     ++|++.++ |+++++|..|.|+++++
T Consensus        79 -~~~~D~ivnVvDAt-nLeRnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~~l~  156 (653)
T COG0370          79 -EGKPDLIVNVVDAT-NLERNLYLTLQLLELGIPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAKRGEGLEELK  156 (653)
T ss_pred             -cCCCCEEEEEcccc-hHHHHHHHHHHHHHcCCCeEEEeccHhhHHhcCCcccHHHHHHHhCCCEEEEEeecCCCHHHHH
Confidence             37899999999998 33333222    34455544  23444443332     57777777 99999999999999999


Q ss_pred             HHHHHHHHHH
Q 038053          172 GQMQESYEDQ  181 (231)
Q Consensus       172 ~~i~~~~~~~  181 (231)
                      .++....+..
T Consensus       157 ~~i~~~~~~~  166 (653)
T COG0370         157 RAIIELAESK  166 (653)
T ss_pred             HHHHHhcccc
Confidence            9997644433

>TIGR00436 era GTP-binding protein Era

Probab=99.69  E-value=7.3e-16  Score=126.68  Aligned_cols=148  Identities=19%  Similarity=0.216  Sum_probs=96.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhh
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLA  104 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~  104 (231)
                      +|+|+|+||||||||+|+|+|...... ...+++|+....+.... .+..+.++||||+....   ..+...+...+...
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~v-s~~~~TTr~~i~~i~~~-~~~qii~vDTPG~~~~~---~~l~~~~~~~~~~~   76 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISIT-SPKAQTTRNRISGIHTT-GASQIIFIDTPGFHEKK---HSLNRLMMKEARSA   76 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeec-CCCCCcccCcEEEEEEc-CCcEEEEEECcCCCCCc---chHHHHHHHHHHHH
Confidence            799999999999999999999876443 24556666543332222 55678899999997642   23344455555566


Q ss_pred             cCCccEEEEEEECCCCCCHHHHH----hcCCCCcHHHHHHHHHhhH--------HHHHhhc--cchhhhhhhhHhhHHHH
Q 038053          105 KGGIHAVLVVFSVRSRFSQEEEA----ANGGQPYTDEFLAELKRGA--------TELRDQQ--AEVDSLKEYSKQEISKL  170 (231)
Q Consensus       105 ~~~~~~il~vvd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~--------~~l~~~~--~~i~~is~~~~~~i~~l  170 (231)
                      +..+|++++|+|+++..+.....    .....|.+ .++|+.|...        ..+....  .+++++||.+|.|++++
T Consensus        77 l~~aDvvl~VvD~~~~~~~~~~i~~~l~~~~~p~i-lV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L  155 (270)
T TIGR00436        77 IGGVDLILFVVDSDQWNGDGEFVLTKLQNLKRPVV-LTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGDNTSFL  155 (270)
T ss_pred             HhhCCEEEEEEECCCCCchHHHHHHHHHhcCCCEE-EEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHH
Confidence            68899999999998554443211    22233433 2333433110        1222222  26788999999999999


Q ss_pred             HHHHHHHH
Q 038053          171 MGQMQESY  178 (231)
Q Consensus       171 ~~~i~~~~  178 (231)
                      ++.+.+..
T Consensus       156 ~~~l~~~l  163 (270)
T TIGR00436       156 AAFIEVHL  163 (270)
T ss_pred             HHHHHHhC
Confidence            99988754

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>PRK15494 era GTPase Era; Provisional

Probab=99.69  E-value=2.5e-16  Score=133.11  Aligned_cols=164  Identities=17%  Similarity=0.197  Sum_probs=110.5

Q ss_pred             CcccCCCcccCCCCCCce-------EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEe
Q 038053            7 ERVIDGDWKPTSSSNGKR-------TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVID   79 (231)
Q Consensus         7 ~~~~~~~~~~~i~~g~~~-------~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~D   79 (231)
                      ....+..+++.+..|  .       +|+++|++|||||||+|.|+|....... ..+++|+....+.... .+..+.++|
T Consensus        31 ~~~~~~~~~~~~~~g--~~~~~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs-~k~~tTr~~~~~~~~~-~~~qi~~~D  106 (339)
T PRK15494         31 STGSTSKLPLEVKFG--KMSNQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVT-PKVQTTRSIITGIITL-KDTQVILYD  106 (339)
T ss_pred             CcccccCCccccccc--cccccceeEEEEEcCCCCCHHHHHHHHhCCceeecc-CCCCCccCcEEEEEEe-CCeEEEEEE
Confidence            344577778888877  5       9999999999999999999998764432 3455665544444444 667889999


Q ss_pred             CCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhhH-------H
Q 038053           80 TPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRGA-------T  147 (231)
Q Consensus        80 tpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-------~  147 (231)
                      |||+....   ..+...+...+..++..+|++++|+|..+.+...+..     .....+.+ .++|++|...       +
T Consensus       107 TpG~~~~~---~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~I-lViNKiDl~~~~~~~~~~  182 (339)
T PRK15494        107 TPGIFEPK---GSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPI-FLLNKIDIESKYLNDIKA  182 (339)
T ss_pred             CCCcCCCc---ccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEE-EEEEhhcCccccHHHHHH
Confidence            99986432   2244445555555668899999999998667665533     12223443 3455554211       1


Q ss_pred             HHHhhc--cchhhhhhhhHhhHHHHHHHHHHHH
Q 038053          148 ELRDQQ--AEVDSLKEYSKQEISKLMGQMQESY  178 (231)
Q Consensus       148 ~l~~~~--~~i~~is~~~~~~i~~l~~~i~~~~  178 (231)
                      .+....  .+++++||++|.|++.++..+....
T Consensus       183 ~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l  215 (339)
T PRK15494        183 FLTENHPDSLLFPISALSGKNIDGLLEYITSKA  215 (339)
T ss_pred             HHHhcCCCcEEEEEeccCccCHHHHHHHHHHhC
Confidence            222222  2578899999999999999887753

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.68  E-value=1.1e-15  Score=133.64  Aligned_cols=162  Identities=25%  Similarity=0.318  Sum_probs=110.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      ..+|+++|++|+|||||+|+|+|......+ ..+++|.+........ .+..+.++||||+.........+.........
T Consensus       173 ~~~v~ivG~~n~GKStlin~ll~~~~~~~~-~~~gtt~~~~~~~~~~-~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~  250 (435)
T PRK00093        173 PIKIAIIGRPNVGKSSLINALLGEERVIVS-DIAGTTRDSIDTPFER-DGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL  250 (435)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCceEEEEEEEEEE-CCeeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence            389999999999999999999998765443 4667777655444444 67788999999987644433333322222233


Q ss_pred             hhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhh----H----HHHHhhc-----cchhhhhhhhH
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRG----A----TELRDQQ-----AEVDSLKEYSK  164 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~----~----~~l~~~~-----~~i~~is~~~~  164 (231)
                      .++..+|++++|+|++++++..+..     ...+.+++ .++|++|..    .    ..+...+     .+++++||++|
T Consensus       251 ~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~i-vv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~  329 (435)
T PRK00093        251 KAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALV-IVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISALTG  329 (435)
T ss_pred             HHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEE-EEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeCCCC
Confidence            4557889999999999888887765     22334443 233333210    0    2233322     27888999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHH
Q 038053          165 QEISKLMGQMQESYEDQIKRITE  187 (231)
Q Consensus       165 ~~i~~l~~~i~~~~~~~~~~~~~  187 (231)
                      .|+.+++..+...+..+..++.+
T Consensus       330 ~gv~~l~~~i~~~~~~~~~~i~t  352 (435)
T PRK00093        330 QGVDKLLEAIDEAYENANRRIST  352 (435)
T ss_pred             CCHHHHHHHHHHHHHHHcCcCCh
Confidence            99999999999988777655443

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.65  E-value=3.2e-15  Score=130.64  Aligned_cols=161  Identities=24%  Similarity=0.301  Sum_probs=108.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+++|.+|+|||||+|.|+|...... ...+++|.+........ .+..+.++||||+.......+.+..........
T Consensus       173 ~~v~ivG~~~~GKSsLin~l~~~~~~~~-~~~~gtt~~~~~~~~~~-~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~  250 (429)
T TIGR03594       173 IKIAIIGRPNVGKSTLVNALLGEERVIV-SDIAGTTRDSIDIPFER-NGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLK  250 (429)
T ss_pred             eEEEEECCCCCCHHHHHHHHHCCCeeec-CCCCCceECcEeEEEEE-CCcEEEEEECCCccccccchhhHHHHHHHHHHH
Confidence            6899999999999999999999875433 24566776655444444 677899999999876544333333222222334


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhh-----H----HHHHhhc-----cchhhhhhhhH
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRG-----A----TELRDQQ-----AEVDSLKEYSK  164 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-----~----~~l~~~~-----~~i~~is~~~~  164 (231)
                      ++..+|++++|+|+.++++..+..     ...+.+++ .++|+.|..     .    ..+...+     .+++++||++|
T Consensus       251 ~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~ii-iv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g  329 (429)
T TIGR03594       251 AIERADVVLLVLDATEGITEQDLRIAGLILEAGKALV-IVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALTG  329 (429)
T ss_pred             HHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEE-EEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeCCCC
Confidence            567889999999999888887765     22334443 222332210     0    2333332     27888999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHH
Q 038053          165 QEISKLMGQMQESYEDQIKRITE  187 (231)
Q Consensus       165 ~~i~~l~~~i~~~~~~~~~~~~~  187 (231)
                      .|+.+++..+...++.+..++.+
T Consensus       330 ~~v~~l~~~i~~~~~~~~~~i~t  352 (429)
T TIGR03594       330 QGVDKLLDAIDEVYENANRRIST  352 (429)
T ss_pred             CCHHHHHHHHHHHHHHhcCcCCH
Confidence            99999999999988777655543

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>COG2262 HflX GTPases [General function prediction only]

Probab=99.65  E-value=6.9e-16  Score=129.22  Aligned_cols=153  Identities=18%  Similarity=0.134  Sum_probs=104.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      .+.|+|+|++|||||||||+|+|...+..  +.-..|.++......+..++.+.+.||.||....  ...+...|...+.
T Consensus       192 ~p~vaLvGYTNAGKSTL~N~LT~~~~~~~--d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~L--P~~LV~AFksTLE  267 (411)
T COG2262         192 IPLVALVGYTNAGKSTLFNALTGADVYVA--DQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDL--PHPLVEAFKSTLE  267 (411)
T ss_pred             CCeEEEEeeccccHHHHHHHHhccCeecc--ccccccccCceeEEEeCCCceEEEecCccCcccC--ChHHHHHHHHHHH
Confidence            47999999999999999999999987643  3444455554445555457899999999998743  3556666666555


Q ss_pred             hhcCCccEEEEEEECCCCCCHHHHH--------h-cCCCCcHHHHHHHHHhhH-----HHHHhhccchhhhhhhhHhhHH
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEEEA--------A-NGGQPYTDEFLAELKRGA-----TELRDQQAEVDSLKEYSKQEIS  168 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~-----~~l~~~~~~i~~is~~~~~~i~  168 (231)
                      .. ..+|.+++|||++++.......        . ....|. +.++|++|.-.     ..+....+..+++||.+|.|++
T Consensus       268 E~-~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~-i~v~NKiD~~~~~~~~~~~~~~~~~~v~iSA~~~~gl~  345 (411)
T COG2262         268 EV-KEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPI-ILVLNKIDLLEDEEILAELERGSPNPVFISAKTGEGLD  345 (411)
T ss_pred             Hh-hcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCE-EEEEecccccCchhhhhhhhhcCCCeEEEEeccCcCHH
Confidence            44 7899999999999652222222        1 122344 35667755211     1222222347889999999999


Q ss_pred             HHHHHHHHHHHHH
Q 038053          169 KLMGQMQESYEDQ  181 (231)
Q Consensus       169 ~l~~~i~~~~~~~  181 (231)
                      .|+..|.......
T Consensus       346 ~L~~~i~~~l~~~  358 (411)
T COG2262         346 LLRERIIELLSGL  358 (411)
T ss_pred             HHHHHHHHHhhhc
Confidence            9999998866533

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.65  E-value=4.2e-15  Score=131.09  Aligned_cols=169  Identities=20%  Similarity=0.239  Sum_probs=111.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHH-
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRI-  101 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~-  101 (231)
                      ..+|+++|++|+|||||+|.|++...... ...+++|++........ .+..+.++||||+.......  ...+....+ 
T Consensus       211 ~~kI~iiG~~nvGKSSLin~l~~~~~~~~-s~~~gtT~d~~~~~~~~-~~~~~~l~DTaG~~~~~~~~--~~~e~~~~~~  286 (472)
T PRK03003        211 PRRVALVGKPNVGKSSLLNKLAGEERSVV-DDVAGTTVDPVDSLIEL-GGKTWRFVDTAGLRRRVKQA--SGHEYYASLR  286 (472)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCcccc-cCCCCccCCcceEEEEE-CCEEEEEEECCCcccccccc--chHHHHHHHH
Confidence            47999999999999999999999875433 24667777665444544 67778899999986432211  112222211 


Q ss_pred             -hhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhh-------H-HHHHhhc-----cchhhhhhh
Q 038053          102 -GLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRG-------A-TELRDQQ-----AEVDSLKEY  162 (231)
Q Consensus       102 -~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-------~-~~l~~~~-----~~i~~is~~  162 (231)
                       ..++..+|++++|+|++++.+..+..     ...+.+++ .++|++|..       . ..+...+     .+++.+||+
T Consensus       287 ~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piI-iV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk  365 (472)
T PRK03003        287 THAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALV-LAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAK  365 (472)
T ss_pred             HHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECC
Confidence             23457899999999999888877654     22334443 233333310       0 1222211     267789999


Q ss_pred             hHhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 038053          163 SKQEISKLMGQMQESYEDQIKRITE-MVESELKET  196 (231)
Q Consensus       163 ~~~~i~~l~~~i~~~~~~~~~~~~~-~~~~~~~~~  196 (231)
                      +|.|+++++..+...++.+..++.+ .+++.+++.
T Consensus       366 ~g~gv~~lf~~i~~~~~~~~~~i~t~~ln~~~~~~  400 (472)
T PRK03003        366 TGRAVDKLVPALETALESWDTRIPTGRLNAWLGEL  400 (472)
T ss_pred             CCCCHHHHHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence            9999999999999998888776665 445555443

>PRK00089 era GTPase Era; Reviewed

Probab=99.64  E-value=6.4e-15  Score=122.43  Aligned_cols=149  Identities=19%  Similarity=0.252  Sum_probs=98.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      ..|+|+|++|||||||+|.|+|....... ..+.+|+......... .+..+.++||||+....   ..+...+......
T Consensus         6 g~V~iiG~pn~GKSTLin~L~g~~~~~vs-~~~~tt~~~i~~i~~~-~~~qi~~iDTPG~~~~~---~~l~~~~~~~~~~   80 (292)
T PRK00089          6 GFVAIVGRPNVGKSTLLNALVGQKISIVS-PKPQTTRHRIRGIVTE-DDAQIIFVDTPGIHKPK---RALNRAMNKAAWS   80 (292)
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCceeecC-CCCCcccccEEEEEEc-CCceEEEEECCCCCCch---hHHHHHHHHHHHH
Confidence            38999999999999999999998765442 3444454433322222 45688999999997643   3344555555566


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhh--H-------HHHHhhc--cchhhhhhhhHhhH
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRG--A-------TELRDQQ--AEVDSLKEYSKQEI  167 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~--~-------~~l~~~~--~~i~~is~~~~~~i  167 (231)
                      .+..+|++++++|+++.++..+..     .....|.+ .++|++|..  .       ..+....  .+++++|+.++.|+
T Consensus        81 ~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvi-lVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv  159 (292)
T PRK00089         81 SLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVI-LVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNV  159 (292)
T ss_pred             HHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEE-EEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCH
Confidence            678899999999998666665544     11123443 334444321  0       1222222  36778999999999


Q ss_pred             HHHHHHHHHHH
Q 038053          168 SKLMGQMQESY  178 (231)
Q Consensus       168 ~~l~~~i~~~~  178 (231)
                      +.++..+....
T Consensus       160 ~~L~~~L~~~l  170 (292)
T PRK00089        160 DELLDVIAKYL  170 (292)
T ss_pred             HHHHHHHHHhC
Confidence            99999887754

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.63  E-value=1e-14  Score=125.11  Aligned_cols=148  Identities=18%  Similarity=0.184  Sum_probs=98.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhh
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLA  104 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~  104 (231)
                      -|+|||+||||||||||+|++.... . ...+.+|+....+.........+.++||||+.........+...++.    .
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k~~-v-s~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~----~  234 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAKPK-V-ADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLK----H  234 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCccc-c-cCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHH----H
Confidence            6999999999999999999998652 2 35677888777777666334568999999998755443445555544    3


Q ss_pred             cCCccEEEEEEECCCCCC---H-HHHH------hc-----CCCCcHHHHHHHHHhhH--------HHHHhhcc---chhh
Q 038053          105 KGGIHAVLVVFSVRSRFS---Q-EEEA------AN-----GGQPYTDEFLAELKRGA--------TELRDQQA---EVDS  158 (231)
Q Consensus       105 ~~~~~~il~vvd~~~~~~---~-~~~~------~~-----~~~~~~~~~~~~~~~~~--------~~l~~~~~---~i~~  158 (231)
                      +.+++++++|+|++ .++   . .+..      ..     ...|.+ .+++++|...        ..+.....   ++++
T Consensus       235 i~radvlL~VVD~s-~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~I-lVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~  312 (390)
T PRK12298        235 LERCRVLLHLIDIA-PIDGSDPVENARIIINELEKYSPKLAEKPRW-LVFNKIDLLDEEEAEERAKAIVEALGWEGPVYL  312 (390)
T ss_pred             HHhCCEEEEEeccC-cccccChHHHHHHHHHHHHhhhhhhcCCCEE-EEEeCCccCChHHHHHHHHHHHHHhCCCCCEEE
Confidence            46779999999987 221   1 1111      11     123443 3445544210        12222222   5788


Q ss_pred             hhhhhHhhHHHHHHHHHHHHHH
Q 038053          159 LKEYSKQEISKLMGQMQESYED  180 (231)
Q Consensus       159 is~~~~~~i~~l~~~i~~~~~~  180 (231)
                      +||+++.++++++..+.+.+.+
T Consensus       313 ISA~tg~GIdeLl~~I~~~L~~  334 (390)
T PRK12298        313 ISAASGLGVKELCWDLMTFIEE  334 (390)
T ss_pred             EECCCCcCHHHHHHHHHHHhhh
Confidence            9999999999999999887654

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.62  E-value=1.6e-15  Score=129.15  Aligned_cols=159  Identities=14%  Similarity=0.097  Sum_probs=107.4

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHH
Q 038053           18 SSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEI   97 (231)
Q Consensus        18 i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~   97 (231)
                      +.+|  ..|+|+|+||+|||||+|+|+..+..+++ ..+|+|++.....+.. ++..++++||+|+..  ...+.+...-
T Consensus       265 lq~g--l~iaIvGrPNvGKSSLlNaL~~~drsIVS-pv~GTTRDaiea~v~~-~G~~v~L~DTAGiRe--~~~~~iE~~g  338 (531)
T KOG1191|consen  265 LQSG--LQIAIVGRPNVGKSSLLNALSREDRSIVS-PVPGTTRDAIEAQVTV-NGVPVRLSDTAGIRE--ESNDGIEALG  338 (531)
T ss_pred             hhcC--CeEEEEcCCCCCHHHHHHHHhcCCceEeC-CCCCcchhhheeEeec-CCeEEEEEecccccc--ccCChhHHHh
Confidence            4567  89999999999999999999999998885 6788998887776765 999999999999987  2223344444


Q ss_pred             HHHHhhhcCCccEEEEEEECCCCCCHHHHH----------------hcCCCCcHHHHHHHHHhhH----------HHHHh
Q 038053           98 VKRIGLAKGGIHAVLVVFSVRSRFSQEEEA----------------ANGGQPYTDEFLAELKRGA----------TELRD  151 (231)
Q Consensus        98 ~~~~~~~~~~~~~il~vvd~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~----------~~l~~  151 (231)
                      +......+.++|++++|+|+...++..+..                ....+...+.+.++.+-..          ..+..
T Consensus       339 I~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~  418 (531)
T KOG1191|consen  339 IERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSA  418 (531)
T ss_pred             HHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecccc
Confidence            555666778999999999994333333322                0011111112223322100          00111


Q ss_pred             ----hccchhhhhhhhHhhHHHHHHHHHHHHHHHH
Q 038053          152 ----QQAEVDSLKEYSKQEISKLMGQMQESYEDQI  182 (231)
Q Consensus       152 ----~~~~i~~is~~~~~~i~~l~~~i~~~~~~~~  182 (231)
                          ..+.+..+|+.+++|+++|...+.+.+....
T Consensus       419 ~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~  453 (531)
T KOG1191|consen  419 EGRSVFPIVVEVSCTTKEGCERLSTALLNIVERLV  453 (531)
T ss_pred             ccCcccceEEEeeechhhhHHHHHHHHHHHHHHhh
Confidence                2223444788999999999999988775443

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.62  E-value=9.6e-15  Score=122.95  Aligned_cols=149  Identities=17%  Similarity=0.186  Sum_probs=98.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .-|+|||.||||||||||+|++....+  ...+.+|..+..+.........+.++|+||+.........+...+++++  
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~~~v--a~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhi--  234 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAKPKI--ADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHI--  234 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCCCcc--CCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHh--
Confidence            459999999999999999999976432  3566778877777666535567999999999875544444555555443  


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH--------hc---CCCCcHHHHHHHHHhhH------HHHH---hhc-cchhhhhhh
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA--------AN---GGQPYTDEFLAELKRGA------TELR---DQQ-AEVDSLKEY  162 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~--------~~---~~~~~~~~~~~~~~~~~------~~l~---~~~-~~i~~is~~  162 (231)
                        .+++++++|+|+++.-+.++..        ..   ...|++ .++|++|...      ..+.   ... .+++++||+
T Consensus       235 --e~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~I-IV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAk  311 (335)
T PRK12299        235 --ERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRI-LVLNKIDLLDEEEEREKRAALELAALGGPVFLISAV  311 (335)
T ss_pred             --hhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeE-EEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcC
Confidence              5679999999998432222222        11   123433 3445544210      0111   112 267889999


Q ss_pred             hHhhHHHHHHHHHHHHH
Q 038053          163 SKQEISKLMGQMQESYE  179 (231)
Q Consensus       163 ~~~~i~~l~~~i~~~~~  179 (231)
                      ++.|+++++..+.+.+.
T Consensus       312 tg~GI~eL~~~L~~~l~  328 (335)
T PRK12299        312 TGEGLDELLRALWELLE  328 (335)
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            99999999988877543

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.62  E-value=1e-14  Score=104.65  Aligned_cols=90  Identities=27%  Similarity=0.355  Sum_probs=63.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhh
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLA  104 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~  104 (231)
                      +|+|+|++|+|||||+|+|+|......+ ..+++|.......... .+..+.++||||+.+....... ...+...+.. 
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~-~~~~~T~~~~~~~~~~-~~~~~~~vDtpG~~~~~~~~~~-~~~~~~~~~~-   76 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVS-NIPGTTRDPVYGQFEY-NNKKFILVDTPGINDGESQDND-GKEIRKFLEQ-   76 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEES-SSTTSSSSEEEEEEEE-TTEEEEEEESSSCSSSSHHHHH-HHHHHHHHHH-
T ss_pred             CEEEECCCCCCHHHHHHHHhcccccccc-ccccceeeeeeeeeee-ceeeEEEEeCCCCcccchhhHH-HHHHHHHHHH-
Confidence            5899999999999999999997544443 4566776664444444 7788889999999874322111 1223333333 


Q ss_pred             cCCccEEEEEEECC
Q 038053          105 KGGIHAVLVVFSVR  118 (231)
Q Consensus       105 ~~~~~~il~vvd~~  118 (231)
                      ...+|++++|+|+.
T Consensus        77 ~~~~d~ii~vv~~~   90 (116)
T PF01926_consen   77 ISKSDLIIYVVDAS   90 (116)
T ss_dssp             HCTESEEEEEEETT
T ss_pred             HHHCCEEEEEEECC
Confidence            38889999999976

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.62  E-value=3.4e-14  Score=108.91  Aligned_cols=150  Identities=17%  Similarity=0.229  Sum_probs=98.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCc-cccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCc---hHHHHHHH
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKA-FKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGS---EFVGKEIV   98 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~---~~~~~~~~   98 (231)
                      ...|+++|++|+|||||||+|+|... +.+ ...||.|.........    ..++++|.||+....-..   +.+...+.
T Consensus        24 ~~EIaF~GRSNVGKSSlIN~l~~~k~LArt-SktPGrTq~iNff~~~----~~~~lVDlPGYGyAkv~k~~~e~w~~~i~   98 (200)
T COG0218          24 LPEIAFAGRSNVGKSSLINALTNQKNLART-SKTPGRTQLINFFEVD----DELRLVDLPGYGYAKVPKEVKEKWKKLIE   98 (200)
T ss_pred             CcEEEEEccCcccHHHHHHHHhCCcceeec-CCCCCccceeEEEEec----CcEEEEeCCCcccccCCHHHHHHHHHHHH
Confidence            37899999999999999999999662 333 4789999877665542    227899999987543222   22222233


Q ss_pred             HHHhhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhhH--------HHHHhhcc-----c--hhh
Q 038053           99 KRIGLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRGA--------TELRDQQA-----E--VDS  158 (231)
Q Consensus        99 ~~~~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~--------~~l~~~~~-----~--i~~  158 (231)
                      .++ ........+++++|+...+.+.|+.     ...+.++. ++++++|+-.        ..+.+.+.     .  +..
T Consensus        99 ~YL-~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~-vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~~~  176 (200)
T COG0218          99 EYL-EKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVI-VVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWVVL  176 (200)
T ss_pred             HHH-hhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeE-EEEEccccCChhHHHHHHHHHHHHhcCCCCccceEEE
Confidence            333 3334578999999999888888876     23344444 4455555211        12222221     1  566


Q ss_pred             hhhhhHhhHHHHHHHHHHHHH
Q 038053          159 LKEYSKQEISKLMGQMQESYE  179 (231)
Q Consensus       159 is~~~~~~i~~l~~~i~~~~~  179 (231)
                      .|+..+.|++++...+.+.+.
T Consensus       177 ~ss~~k~Gi~~l~~~i~~~~~  197 (200)
T COG0218         177 FSSLKKKGIDELKAKILEWLK  197 (200)
T ss_pred             EecccccCHHHHHHHHHHHhh
Confidence            788889999999888877543

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.62  E-value=8e-16  Score=124.50  Aligned_cols=154  Identities=19%  Similarity=0.205  Sum_probs=109.4

Q ss_pred             cccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHH
Q 038053           14 WKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFV   93 (231)
Q Consensus        14 ~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~   93 (231)
                      +.+.+..=  .-|+|||.||||||||+|+|+.....+  .++..+|..+..+.........+.+.|.||+......+..+
T Consensus       189 ~~lELKsi--advGLVG~PNAGKSTLL~als~AKpkV--a~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGl  264 (366)
T KOG1489|consen  189 IELELKSI--ADVGLVGFPNAGKSTLLNALSRAKPKV--AHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGL  264 (366)
T ss_pred             EEEEeeee--cccceecCCCCcHHHHHHHhhccCCcc--cccceeeeccccceeeccccceeEeccCccccccccccCcc
Confidence            34444444  569999999999999999999998743  35777777777776666344559999999999999888899


Q ss_pred             HHHHHHHHhhhcCCccEEEEEEECCCC-----CCHHHHH---------hcCCCCcHHHHHHHHHh-hH-----HHHHhhc
Q 038053           94 GKEIVKRIGLAKGGIHAVLVVFSVRSR-----FSQEEEA---------ANGGQPYTDEFLAELKR-GA-----TELRDQQ  153 (231)
Q Consensus        94 ~~~~~~~~~~~~~~~~~il~vvd~~~~-----~~~~~~~---------~~~~~~~~~~~~~~~~~-~~-----~~l~~~~  153 (231)
                      +..+++++..+    +.+++|+|++..     |+....-         ....+|.+ .+++++|. ++     .+|..++
T Consensus       265 G~~FLrHiER~----~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~l-iVaNKiD~~eae~~~l~~L~~~l  339 (366)
T KOG1489|consen  265 GYKFLRHIERC----KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPAL-IVANKIDLPEAEKNLLSSLAKRL  339 (366)
T ss_pred             cHHHHHHHHhh----ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceE-EEEeccCchhHHHHHHHHHHHHc
Confidence            99999887655    899999999833     2221111         22233333 45566553 22     2344444


Q ss_pred             c-c-hhhhhhhhHhhHHHHHHHHHH
Q 038053          154 A-E-VDSLKEYSKQEISKLMGQMQE  176 (231)
Q Consensus       154 ~-~-i~~is~~~~~~i~~l~~~i~~  176 (231)
                      . + |+++||++++++..++..+..
T Consensus       340 q~~~V~pvsA~~~egl~~ll~~lr~  364 (366)
T KOG1489|consen  340 QNPHVVPVSAKSGEGLEELLNGLRE  364 (366)
T ss_pred             CCCcEEEeeeccccchHHHHHHHhh
Confidence            3 3 889999999999999887754

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.61  E-value=3.6e-15  Score=130.30  Aligned_cols=148  Identities=22%  Similarity=0.314  Sum_probs=105.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhh
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLA  104 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~  104 (231)
                      +|+|+|++|+|||||+|.|+|...... ...+++|++.......+ .+..+.++||||+....   ..+...+......+
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~t~d~~~~~~~~-~~~~~~liDTpG~~~~~---~~~~~~~~~~~~~~   75 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIV-SDTPGVTRDRKYGDAEW-GGREFILIDTGGIEEDD---DGLDKQIREQAEIA   75 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCccee-cCCCCcccCceEEEEEE-CCeEEEEEECCCCCCcc---hhHHHHHHHHHHHH
Confidence            489999999999999999999875444 35678888877777777 78889999999986421   33445555556666


Q ss_pred             cCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhhH-----HHHHh-hccchhhhhhhhHhhHHHHHHH
Q 038053          105 KGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRGA-----TELRD-QQAEVDSLKEYSKQEISKLMGQ  173 (231)
Q Consensus       105 ~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-----~~l~~-~~~~i~~is~~~~~~i~~l~~~  173 (231)
                      +..+|++++|+|+.++++..+..     .....|++ .++++.+...     .++.. .+.+++.+|+.+|.|+.++++.
T Consensus        76 ~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~pii-lVvNK~D~~~~~~~~~~~~~lg~~~~~~vSa~~g~gv~~ll~~  154 (429)
T TIGR03594        76 IEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVI-LVANKIDGKKEDAVAAEFYSLGFGEPIPISAEHGRGIGDLLDA  154 (429)
T ss_pred             HhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEE-EEEECccCCcccccHHHHHhcCCCCeEEEeCCcCCChHHHHHH
Confidence            78899999999998788877654     22344444 3445544211     12221 2236788999999999999888


Q ss_pred             HHHHH
Q 038053          174 MQESY  178 (231)
Q Consensus       174 i~~~~  178 (231)
                      +...+
T Consensus       155 i~~~l  159 (429)
T TIGR03594       155 ILELL  159 (429)
T ss_pred             HHHhc
Confidence            77654

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.60  E-value=4.4e-15  Score=125.88  Aligned_cols=147  Identities=18%  Similarity=0.162  Sum_probs=95.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      ..|+|+|++|||||||+|+|+|.....  .+.++.|.+..........+..+.++||||+....+  ..+.+.+...+ .
T Consensus       190 ~~ValvG~~NvGKSSLln~L~~~~~~v--~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~--~~lie~f~~tl-e  264 (351)
T TIGR03156       190 PTVALVGYTNAGKSTLFNALTGADVYA--ADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLP--HELVAAFRATL-E  264 (351)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCceee--ccCCccccCCEEEEEEeCCCceEEEEecCcccccCC--HHHHHHHHHHH-H
Confidence            789999999999999999999987432  245566766655555554567899999999954221  23333343332 3


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH--------hc-CCCCcHHHHHHHHHhhH-HHHH---hhccchhhhhhhhHhhHHHH
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA--------AN-GGQPYTDEFLAELKRGA-TELR---DQQAEVDSLKEYSKQEISKL  170 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~~-~~l~---~~~~~i~~is~~~~~~i~~l  170 (231)
                      ....+|++++|+|+++.....+..        .. ...|++ .++|++|... ..+.   ....+++.+|+++|.|++++
T Consensus       265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piI-lV~NK~Dl~~~~~v~~~~~~~~~~i~iSAktg~GI~eL  343 (351)
T TIGR03156       265 EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQL-LVYNKIDLLDEPRIERLEEGYPEAVFVSAKTGEGLDLL  343 (351)
T ss_pred             HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEE-EEEEeecCCChHhHHHHHhCCCCEEEEEccCCCCHHHH
Confidence            457889999999998654443321        11 133443 4556655211 1121   11124678999999999999


Q ss_pred             HHHHHH
Q 038053          171 MGQMQE  176 (231)
Q Consensus       171 ~~~i~~  176 (231)
                      +..+.+
T Consensus       344 ~~~I~~  349 (351)
T TIGR03156       344 LEAIAE  349 (351)
T ss_pred             HHHHHh
Confidence            888765

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.60  E-value=9.3e-15  Score=129.16  Aligned_cols=72  Identities=26%  Similarity=0.296  Sum_probs=56.1

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeC
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDT   80 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dt   80 (231)
                      +++.|+++.+|+++++++.+|  .+|||||+||+|||||+++|+|...    ++.|.++...        .-+..++.|.
T Consensus         9 ls~~~g~~~l~~~~~l~~~~G--~riGLvG~NGaGKSTLLkilaG~~~----~~~G~i~~~~--------~~~v~~l~Q~   74 (530)
T COG0488           9 LSLAYGDRPLLENVSLTLNPG--ERIGLVGRNGAGKSTLLKILAGELE----PDSGEVTRPK--------GLRVGYLSQE   74 (530)
T ss_pred             eEEeeCCceeecCCcceeCCC--CEEEEECCCCCCHHHHHHHHcCCCc----CCCCeEeecC--------CceEEEeCCC
Confidence            467899999999999999999  9999999999999999999999997    4455444422        1234455565


Q ss_pred             CCCcCC
Q 038053           81 PGLFDS   86 (231)
Q Consensus        81 pg~~~~   86 (231)
                      |.+++.
T Consensus        75 ~~~~~~   80 (530)
T COG0488          75 PPLDPE   80 (530)
T ss_pred             CCcCCC
Confidence            555543

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.60  E-value=8.5e-15  Score=109.80  Aligned_cols=148  Identities=21%  Similarity=0.250  Sum_probs=96.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+++|++|+|||||+|+|++...... ...+++|.......... .+..+.++||||+.+....   ...........
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~---~~~~~~~~~~~   76 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIV-SDIAGTTRDVIEESIDI-GGIPVRLIDTAGIRETEDE---IEKIGIERARE   76 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEec-cCCCCCccceEEEEEEe-CCEEEEEEECCCcCCCcch---HHHHHHHHHHH
Confidence            6899999999999999999999874333 23555665544444444 5678899999998764321   22222222334


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH---hcCCCCcHHHHHHHHHhhH-HHH--HhhccchhhhhhhhHhhHHHHHHHHHHH
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA---ANGGQPYTDEFLAELKRGA-TEL--RDQQAEVDSLKEYSKQEISKLMGQMQES  177 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~l--~~~~~~i~~is~~~~~~i~~l~~~i~~~  177 (231)
                      ....+|++++|+|+++..+..+..   .....|. +.+++++|... ...  .....+++.+|+.++.+++.+++.+...
T Consensus        77 ~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~v-i~v~nK~D~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~  155 (157)
T cd04164          77 AIEEADLVLFVIDASRGLDEEDLEILELPADKPI-IVVLNKSDLLPDSELLSLLAGKPIIAISAKTGEGLDELKEALLEL  155 (157)
T ss_pred             HHhhCCEEEEEEECCCCCCHHHHHHHHhhcCCCE-EEEEEchhcCCccccccccCCCceEEEECCCCCCHHHHHHHHHHh
Confidence            456889999999999666665544   1223333 35667766211 011  1112267889999999999998887653

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.60  E-value=2.3e-14  Score=132.05  Aligned_cols=166  Identities=21%  Similarity=0.214  Sum_probs=109.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHH--H
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKR--I  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~--~  101 (231)
                      .+|+|+|++|||||||+|.|++...... ...+++|++........ .+..+.++||||+.......  .+.+....  .
T Consensus       451 ~kI~ivG~~nvGKSSLin~l~~~~~~~v-~~~~gtT~d~~~~~~~~-~~~~~~liDTaG~~~~~~~~--~~~e~~~~~r~  526 (712)
T PRK09518        451 RRVALVGRPNVGKSSLLNQLTHEERAVV-NDLAGTTRDPVDEIVEI-DGEDWLFIDTAGIKRRQHKL--TGAEYYSSLRT  526 (712)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcccccc-CCCCCCCcCcceeEEEE-CCCEEEEEECCCcccCcccc--hhHHHHHHHHH
Confidence            6999999999999999999999875333 24667777655444444 67778899999986433221  12222222  1


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhh----H----HHHHhhc-----cchhhhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRG----A----TELRDQQ-----AEVDSLKEYS  163 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~----~----~~l~~~~-----~~i~~is~~~  163 (231)
                      ..++..+|++++|+|++++++..+..     ...+.|++ .++|++|..    .    ..+...+     .++.++||++
T Consensus       527 ~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piI-iV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAkt  605 (712)
T PRK09518        527 QAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALV-LVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAKT  605 (712)
T ss_pred             HHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECCC
Confidence            23457899999999999888877654     22344444 333443310    0    1222222     1567789999


Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 038053          164 KQEISKLMGQMQESYEDQIKRITE-MVESELK  194 (231)
Q Consensus       164 ~~~i~~l~~~i~~~~~~~~~~~~~-~~~~~~~  194 (231)
                      |.|+.+++..+.+.+..+.+++.+ .+++.++
T Consensus       606 g~gv~~L~~~i~~~~~~~~~~i~T~~Ln~~l~  637 (712)
T PRK09518        606 GWHTNRLAPAMQEALESWDQRIPTGKLNAFLG  637 (712)
T ss_pred             CCCHHHHHHHHHHHHHHhcccCChHHHHHHHH
Confidence            999999999999988877766554 4444443

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.60  E-value=4.2e-15  Score=129.96  Aligned_cols=159  Identities=17%  Similarity=0.139  Sum_probs=104.7

Q ss_pred             cccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHH
Q 038053           14 WKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFV   93 (231)
Q Consensus        14 ~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~   93 (231)
                      +.|.+..-  -.|+|||.||||||||||.|++....+  ...+++|+.+....+.. .+..+.++|+||+.+.......+
T Consensus       152 ~~leLk~~--adV~LVG~PNAGKSTLln~Ls~akpkI--adypfTTl~P~lGvv~~-~~~~f~laDtPGliegas~g~gL  226 (500)
T PRK12296        152 LVLELKSV--ADVGLVGFPSAGKSSLISALSAAKPKI--ADYPFTTLVPNLGVVQA-GDTRFTVADVPGLIPGASEGKGL  226 (500)
T ss_pred             EEEEeccc--ceEEEEEcCCCCHHHHHHHHhcCCccc--cccCcccccceEEEEEE-CCeEEEEEECCCCccccchhhHH
Confidence            34444444  579999999999999999999986533  35677787777776666 66789999999998755444445


Q ss_pred             HHHHHHHHhhhcCCccEEEEEEECCC------CCCHHHHH------hc------------CCCCcHHHHHHHHHhhH---
Q 038053           94 GKEIVKRIGLAKGGIHAVLVVFSVRS------RFSQEEEA------AN------------GGQPYTDEFLAELKRGA---  146 (231)
Q Consensus        94 ~~~~~~~~~~~~~~~~~il~vvd~~~------~~~~~~~~------~~------------~~~~~~~~~~~~~~~~~---  146 (231)
                      ...++.+    +.+++++++|+|+++      .+.+.+..      ..            ...|.+ .++|++|...   
T Consensus       227 g~~fLrh----ieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~I-VVlNKiDL~da~e  301 (500)
T PRK12296        227 GLDFLRH----IERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRL-VVLNKIDVPDARE  301 (500)
T ss_pred             HHHHHHH----HHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEE-EEEECccchhhHH
Confidence            5555443    366799999999963      12222111      11            124443 3445544210   


Q ss_pred             --HHHHhhc----cchhhhhhhhHhhHHHHHHHHHHHHHHHH
Q 038053          147 --TELRDQQ----AEVDSLKEYSKQEISKLMGQMQESYEDQI  182 (231)
Q Consensus       147 --~~l~~~~----~~i~~is~~~~~~i~~l~~~i~~~~~~~~  182 (231)
                        ..+...+    -+++.+|+.++.|+.+|+..+.+.+....
T Consensus       302 l~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r  343 (500)
T PRK12296        302 LAEFVRPELEARGWPVFEVSAASREGLRELSFALAELVEEAR  343 (500)
T ss_pred             HHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence              1112111    26888999999999999999888765543

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.59  E-value=8.3e-15  Score=129.24  Aligned_cols=149  Identities=21%  Similarity=0.277  Sum_probs=102.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+|||++|||||||+|.|+|...... ...+++|++.......+ .+..+.++||||+....   ..+...+......
T Consensus        39 ~~V~IvG~~nvGKSSL~nrl~~~~~~~v-~~~~gvT~d~~~~~~~~-~~~~~~l~DT~G~~~~~---~~~~~~~~~~~~~  113 (472)
T PRK03003         39 PVVAVVGRPNVGKSTLVNRILGRREAVV-EDVPGVTRDRVSYDAEW-NGRRFTVVDTGGWEPDA---KGLQASVAEQAEV  113 (472)
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCcCcccc-cCCCCCCEeeEEEEEEE-CCcEEEEEeCCCcCCcc---hhHHHHHHHHHHH
Confidence            6899999999999999999999865444 35777887766666666 67788999999986321   2234445555555


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhhH-----HHH-HhhccchhhhhhhhHhhHHHHHH
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRGA-----TEL-RDQQAEVDSLKEYSKQEISKLMG  172 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-----~~l-~~~~~~i~~is~~~~~~i~~l~~  172 (231)
                      ++..+|++++|+|++++.+..+..     .....|++ .++|++|...     ..+ ...+...+++||.+|.|+.+++.
T Consensus       114 ~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~pii-lV~NK~Dl~~~~~~~~~~~~~g~~~~~~iSA~~g~gi~eL~~  192 (472)
T PRK03003        114 AMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVI-LAANKVDDERGEADAAALWSLGLGEPHPVSALHGRGVGDLLD  192 (472)
T ss_pred             HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEECccCCccchhhHHHHhcCCCCeEEEEcCCCCCcHHHHH
Confidence            667899999999999777665543     22334444 4455554211     111 11222345799999999999998


Q ss_pred             HHHHHH
Q 038053          173 QMQESY  178 (231)
Q Consensus       173 ~i~~~~  178 (231)
                      .+...+
T Consensus       193 ~i~~~l  198 (472)
T PRK03003        193 AVLAAL  198 (472)
T ss_pred             HHHhhc
Confidence            887654

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.59  E-value=1.1e-14  Score=125.78  Aligned_cols=149  Identities=17%  Similarity=0.213  Sum_probs=99.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhh
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLA  104 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~  104 (231)
                      -|+|||.||||||||||+|++....+  .+.+.+|..+..+......+..+.++|+||+.........+...++.++   
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak~kI--a~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhi---  234 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAKPKI--ANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHI---  234 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCCCcc--ccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHH---
Confidence            79999999999999999999987533  2567778777777666533678999999999865444444555555443   


Q ss_pred             cCCccEEEEEEECCCC--CCH-HHHH--------h---cCCCCcHHHHHHHHHhh-----HHHHHhhcc-chhhhhhhhH
Q 038053          105 KGGIHAVLVVFSVRSR--FSQ-EEEA--------A---NGGQPYTDEFLAELKRG-----ATELRDQQA-EVDSLKEYSK  164 (231)
Q Consensus       105 ~~~~~~il~vvd~~~~--~~~-~~~~--------~---~~~~~~~~~~~~~~~~~-----~~~l~~~~~-~i~~is~~~~  164 (231)
                       .+++++++|+|+++.  -+. .+..        .   ....|.+ .++|++|..     ...+...+. +++++|+.++
T Consensus       235 -er~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~I-VV~NK~DL~~~~e~l~~l~~~l~~~i~~iSA~tg  312 (424)
T PRK12297        235 -ERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQI-VVANKMDLPEAEENLEEFKEKLGPKVFPISALTG  312 (424)
T ss_pred             -hhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEE-EEEeCCCCcCCHHHHHHHHHHhCCcEEEEeCCCC
Confidence             567999999999632  011 1111        1   1133443 445555421     123333332 6788999999


Q ss_pred             hhHHHHHHHHHHHHHH
Q 038053          165 QEISKLMGQMQESYED  180 (231)
Q Consensus       165 ~~i~~l~~~i~~~~~~  180 (231)
                      .|+++++..+.+.+..
T Consensus       313 eGI~eL~~~L~~~l~~  328 (424)
T PRK12297        313 QGLDELLYAVAELLEE  328 (424)
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999998776543

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.59  E-value=1.1e-14  Score=134.27  Aligned_cols=149  Identities=18%  Similarity=0.183  Sum_probs=100.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCc--hHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGS--EFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~--~~~~~~~~~~~  101 (231)
                      .+|+++|+||||||||+|.|+|.....  .+++++|++........ .+..+.++||||.++.....  ....+.+...+
T Consensus         4 ~~IaLvG~pNvGKSTLfN~Ltg~~~~v--gn~pGvTve~k~g~~~~-~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~   80 (772)
T PRK09554          4 LTIGLIGNPNSGKTTLFNQLTGARQRV--GNWAGVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (772)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCcc--CCCCCceEeeEEEEEEc-CceEEEEEECCCccccccccccccHHHHHHHHH
Confidence            589999999999999999999987643  25788998877666655 67789999999998754321  12233333222


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH----hcCCCCcHHHHHHHHHhh--------HHHHHhhcc-chhhhhhhhHhhHH
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA----ANGGQPYTDEFLAELKRG--------ATELRDQQA-EVDSLKEYSKQEIS  168 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--------~~~l~~~~~-~i~~is~~~~~~i~  168 (231)
                      . ....+|++++|+|+++ .......    ...+.|.+ .++|++|..        .+.+.+.++ +++++|+.++.|++
T Consensus        81 l-~~~~aD~vI~VvDat~-ler~l~l~~ql~e~giPvI-vVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~~g~GId  157 (772)
T PRK09554         81 I-LSGDADLLINVVDASN-LERNLYLTLQLLELGIPCI-VALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTRGRGIE  157 (772)
T ss_pred             H-hccCCCEEEEEecCCc-chhhHHHHHHHHHcCCCEE-EEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEeecCCCHH
Confidence            2 2367899999999984 2221111    23344544 333444321        134555554 88889999999999


Q ss_pred             HHHHHHHHHH
Q 038053          169 KLMGQMQESY  178 (231)
Q Consensus       169 ~l~~~i~~~~  178 (231)
                      ++.+.+....
T Consensus       158 eL~~~I~~~~  167 (772)
T PRK09554        158 ALKLAIDRHQ  167 (772)
T ss_pred             HHHHHHHHhh
Confidence            9999987753

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.58  E-value=2.6e-14  Score=125.13  Aligned_cols=154  Identities=23%  Similarity=0.287  Sum_probs=101.9

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHH
Q 038053           19 SSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIV   98 (231)
Q Consensus        19 ~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~   98 (231)
                      .++  .+|+++|++|+|||||+|.|++...... ...+++|.+........ .+..+.++||||+.+..   ..+...-.
T Consensus       213 ~~~--~kV~ivG~~nvGKSSLln~L~~~~~a~v-~~~~gtT~d~~~~~i~~-~g~~i~l~DT~G~~~~~---~~ie~~gi  285 (449)
T PRK05291        213 REG--LKVVIAGRPNVGKSSLLNALLGEERAIV-TDIAGTTRDVIEEHINL-DGIPLRLIDTAGIRETD---DEVEKIGI  285 (449)
T ss_pred             hcC--CEEEEECCCCCCHHHHHHHHhCCCCccc-CCCCCcccccEEEEEEE-CCeEEEEEeCCCCCCCc---cHHHHHHH
Confidence            456  8999999999999999999999875433 24667776655555555 67788999999986422   22222112


Q ss_pred             HHHhhhcCCccEEEEEEECCCCCCHHHHH---hcCCCCcHHHHHHHHHhhH-HHHHh-hccchhhhhhhhHhhHHHHHHH
Q 038053           99 KRIGLAKGGIHAVLVVFSVRSRFSQEEEA---ANGGQPYTDEFLAELKRGA-TELRD-QQAEVDSLKEYSKQEISKLMGQ  173 (231)
Q Consensus        99 ~~~~~~~~~~~~il~vvd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~l~~-~~~~i~~is~~~~~~i~~l~~~  173 (231)
                      .........+|++++|+|++++.+..+..   .....|.+ .++|+.|... ..... ...+++.+|+++|.|++.+++.
T Consensus       286 ~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~~~~~pii-iV~NK~DL~~~~~~~~~~~~~~i~iSAktg~GI~~L~~~  364 (449)
T PRK05291        286 ERSREAIEEADLVLLVLDASEPLTEEDDEILEELKDKPVI-VVLNKADLTGEIDLEEENGKPVIRISAKTGEGIDELREA  364 (449)
T ss_pred             HHHHHHHHhCCEEEEEecCCCCCChhHHHHHHhcCCCCcE-EEEEhhhccccchhhhccCCceEEEEeeCCCCHHHHHHH
Confidence            22233457889999999998666554433   11233443 5667766211 01111 1125678999999999999999


Q ss_pred             HHHHHHH
Q 038053          174 MQESYED  180 (231)
Q Consensus       174 i~~~~~~  180 (231)
                      +.+....
T Consensus       365 L~~~l~~  371 (449)
T PRK05291        365 IKELAFG  371 (449)
T ss_pred             HHHHHhh
Confidence            9887644

>cd01895 EngA2 EngA2 subfamily

Probab=99.57  E-value=4.9e-14  Score=107.26  Aligned_cols=152  Identities=22%  Similarity=0.272  Sum_probs=92.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      +.+|+++|.+|+|||||+|+|++...... ...+++|.......... .+..+.++||||+.........+.........
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIV-SDIAGTTRDSIDVPFEY-DGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceec-cCCCCCccCceeeEEEE-CCeeEEEEECCCCccccchhccHHHHHHHHHH
Confidence            47899999999999999999999864332 23444554443333333 56678899999987643222222111111122


Q ss_pred             hhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhh----------HHHHHhhc-----cchhhhhhh
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRG----------ATELRDQQ-----AEVDSLKEY  162 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~----------~~~l~~~~-----~~i~~is~~  162 (231)
                      .....+|.+++|+|+.+..+.....     .....|.+ .++++.|..          .+.+...+     .+++.+|++
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~i-iv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  158 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALV-IVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISAL  158 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEE-EEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEecc
Confidence            3446889999999998766655433     11233333 233333210          02333333     267778999


Q ss_pred             hHhhHHHHHHHHHHH
Q 038053          163 SKQEISKLMGQMQES  177 (231)
Q Consensus       163 ~~~~i~~l~~~i~~~  177 (231)
                      .+.|+..++..+...
T Consensus       159 ~~~~i~~~~~~l~~~  173 (174)
T cd01895         159 TGQGVDKLFDAIDEV  173 (174)
T ss_pred             CCCCHHHHHHHHHHh
Confidence            999999988887654

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK11058 GTPase HflX; Provisional

Probab=99.57  E-value=1.3e-14  Score=125.73  Aligned_cols=150  Identities=17%  Similarity=0.111  Sum_probs=97.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      ..|+|+|+||||||||||.|+|...+.  .+.+++|.+.......+.....+.++||||++...  ...+...+...+ .
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v--~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~l--p~~lve~f~~tl-~  272 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYA--ADQLFATLDPTLRRIDVADVGETVLADTVGFIRHL--PHDLVAAFKATL-Q  272 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceee--ccCCCCCcCCceEEEEeCCCCeEEEEecCcccccC--CHHHHHHHHHHH-H
Confidence            589999999999999999999987653  24566777766555555334478899999996422  133334444433 3


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhhH---HHHHh---hccchhhhhhhhHhhHH
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRGA---TELRD---QQAEVDSLKEYSKQEIS  168 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~---~~l~~---~~~~i~~is~~~~~~i~  168 (231)
                      ....+|++++|+|+++.....+..         .....|++ .++|++|...   ..+..   ..+.++.+|+++|.|++
T Consensus       273 ~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvI-iV~NKiDL~~~~~~~~~~~~~~~~~~v~ISAktG~GId  351 (426)
T PRK11058        273 ETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTL-LVMNKIDMLDDFEPRIDRDEENKPIRVWLSAQTGAGIP  351 (426)
T ss_pred             HhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEE-EEEEcccCCCchhHHHHHHhcCCCceEEEeCCCCCCHH
Confidence            447899999999998654333321         11233443 4556655211   01110   11123668999999999


Q ss_pred             HHHHHHHHHHH
Q 038053          169 KLMGQMQESYE  179 (231)
Q Consensus       169 ~l~~~i~~~~~  179 (231)
                      .|+..+...+.
T Consensus       352 eL~e~I~~~l~  362 (426)
T PRK11058        352 LLFQALTERLS  362 (426)
T ss_pred             HHHHHHHHHhh
Confidence            99999987653

>cd01894 EngA1 EngA1 subfamily

Probab=99.56  E-value=1.1e-14  Score=109.18  Aligned_cols=144  Identities=22%  Similarity=0.282  Sum_probs=91.7

Q ss_pred             EEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhhcC
Q 038053           27 VLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKG  106 (231)
Q Consensus        27 ~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~  106 (231)
                      +++|.+|+|||||+|.|++...... ...+++|.......... .+..+.++||||+.....   .....+.........
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~-~~~~~~t~~~~~~~~~~-~~~~~~i~DtpG~~~~~~---~~~~~~~~~~~~~~~   75 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIV-EDTPGVTRDRIYGEAEW-GGREFILIDTGGIEPDDE---GISKEIREQAELAIE   75 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEee-cCCCCceeCceeEEEEE-CCeEEEEEECCCCCCchh---HHHHHHHHHHHHHHH
Confidence            5899999999999999999864322 24555665555544544 667889999999986432   233334444444557


Q ss_pred             CccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhhH-----HHHHhh-ccchhhhhhhhHhhHHHHHHHHH
Q 038053          107 GIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRGA-----TELRDQ-QAEVDSLKEYSKQEISKLMGQMQ  175 (231)
Q Consensus       107 ~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-----~~l~~~-~~~i~~is~~~~~~i~~l~~~i~  175 (231)
                      .+|++++++|+.+.++..+..     .....|++ .+++++|...     ..+... ..+++.+|++++.|+++++..+.
T Consensus        76 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~pii-iv~nK~D~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~  154 (157)
T cd01894          76 EADVILFVVDGREGLTPADEEIAKYLRKSKKPVI-LVVNKVDNIKEEDEAAEFYSLGFGEPIPISAEHGRGIGDLLDAIL  154 (157)
T ss_pred             hCCEEEEEEeccccCCccHHHHHHHHHhcCCCEE-EEEECcccCChHHHHHHHHhcCCCCeEEEecccCCCHHHHHHHHH
Confidence            789999999998655544432     11223333 3444444211     122221 22567899999999999988876


Q ss_pred             H
Q 038053          176 E  176 (231)
Q Consensus       176 ~  176 (231)
                      +
T Consensus       155 ~  155 (157)
T cd01894         155 E  155 (157)
T ss_pred             h
Confidence            5

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.55  E-value=1.8e-14  Score=126.12  Aligned_cols=147  Identities=22%  Similarity=0.275  Sum_probs=101.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+|+|.+|+|||||+|.|+|...... ...+++|.+.......+ .+..+.++||||+....   ......+......
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v-~~~~~~t~d~~~~~~~~-~~~~~~liDT~G~~~~~---~~~~~~~~~~~~~   76 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIV-ADTPGVTRDRIYGEAEW-LGREFILIDTGGIEPDD---DGFEKQIREQAEL   76 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceee-CCCCCCcccceEEEEEE-CCcEEEEEECCCCCCcc---hhHHHHHHHHHHH
Confidence            5799999999999999999999875444 35677887777666666 67889999999997622   2233444444555


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhhH-----HHHHh-hccchhhhhhhhHhhHHHHHH
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRGA-----TELRD-QQAEVDSLKEYSKQEISKLMG  172 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-----~~l~~-~~~~i~~is~~~~~~i~~l~~  172 (231)
                      ++..+|++++|+|+.++++..+..     .....|++ .++|+.|...     .++.. ....++.+|+.+|.|+.++++
T Consensus        77 ~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~pii-lv~NK~D~~~~~~~~~~~~~lg~~~~~~iSa~~g~gv~~l~~  155 (435)
T PRK00093         77 AIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVI-LVVNKVDGPDEEADAYEFYSLGLGEPYPISAEHGRGIGDLLD  155 (435)
T ss_pred             HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEE-EEEECccCccchhhHHHHHhcCCCCCEEEEeeCCCCHHHHHH
Confidence            667899999999998777776543     12234443 3445544110     12211 122467789999999999988


Q ss_pred             HHHH
Q 038053          173 QMQE  176 (231)
Q Consensus       173 ~i~~  176 (231)
                      .+..
T Consensus       156 ~I~~  159 (435)
T PRK00093        156 AILE  159 (435)
T ss_pred             HHHh
Confidence            8876

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.54  E-value=5.2e-15  Score=117.01  Aligned_cols=85  Identities=20%  Similarity=0.138  Sum_probs=68.5

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeC
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDT   80 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dt   80 (231)
                      +++.|++..+|+|++|++.+|  ..|+|+|++|||||||+|+|.|...    ++.|.+.......  .-+.....+++|.
T Consensus         9 v~~~f~~~~vl~~i~L~v~~G--EfvsilGpSGcGKSTLLriiAGL~~----p~~G~V~~~g~~v--~~p~~~~~~vFQ~   80 (248)
T COG1116           9 VSKSFGGVEVLEDINLSVEKG--EFVAILGPSGCGKSTLLRLIAGLEK----PTSGEVLLDGRPV--TGPGPDIGYVFQE   80 (248)
T ss_pred             eEEEeCceEEeccceeEECCC--CEEEEECCCCCCHHHHHHHHhCCCC----CCCceEEECCccc--CCCCCCEEEEecc
Confidence            367889999999999999999  9999999999999999999999998    4455444433222  1125677889999


Q ss_pred             CCCcCCCCCchHH
Q 038053           81 PGLFDSSAGSEFV   93 (231)
Q Consensus        81 pg~~~~~~~~~~~   93 (231)
                      +.++++.++.+++
T Consensus        81 ~~LlPW~Tv~~NV   93 (248)
T COG1116          81 DALLPWLTVLDNV   93 (248)
T ss_pred             CcccchhhHHhhh
Confidence            9999988876654

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.53  E-value=2.5e-13  Score=114.28  Aligned_cols=147  Identities=19%  Similarity=0.244  Sum_probs=94.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      ..|+|||.||||||||+|+|++....+  ...+.+|..+............+.++|+||+.........+...+++++  
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~~~v--a~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhi--  233 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAKPKI--ADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHI--  233 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCCccc--cCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHH--
Confidence            469999999999999999999876432  2456677777776666523378999999999865443334555555443  


Q ss_pred             hcCCccEEEEEEECCCC-C-CH-HHHH--------hc---CCCCcHHHHHHHHHhhH--------HHHHhhcc-chhhhh
Q 038053          104 AKGGIHAVLVVFSVRSR-F-SQ-EEEA--------AN---GGQPYTDEFLAELKRGA--------TELRDQQA-EVDSLK  160 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~-~-~~-~~~~--------~~---~~~~~~~~~~~~~~~~~--------~~l~~~~~-~i~~is  160 (231)
                        .+++++++|+|+++. . .. .+..        ..   ...|++ .++|++|...        +.+.+... +++++|
T Consensus       234 --erad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~I-IV~NK~DL~~~~~~~~~~~~l~~~~~~~vi~iS  310 (329)
T TIGR02729       234 --ERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRI-VVLNKIDLLDEEELAELLKELKKALGKPVFPIS  310 (329)
T ss_pred             --HhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEE-EEEeCccCCChHHHHHHHHHHHHHcCCcEEEEE
Confidence              567999999999842 1 11 1111        11   123443 3344443110        12222222 577899


Q ss_pred             hhhHhhHHHHHHHHHHH
Q 038053          161 EYSKQEISKLMGQMQES  177 (231)
Q Consensus       161 ~~~~~~i~~l~~~i~~~  177 (231)
                      ++++.++++++..+.+.
T Consensus       311 Aktg~GI~eL~~~I~~~  327 (329)
T TIGR02729       311 ALTGEGLDELLYALAEL  327 (329)
T ss_pred             ccCCcCHHHHHHHHHHH
Confidence            99999999998887653

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.53  E-value=9.1e-14  Score=128.16  Aligned_cols=149  Identities=22%  Similarity=0.299  Sum_probs=104.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+|+|++|+|||||+|.|+|...... ...+++|++.......+ .+..+.++||||+....   +.+...+......
T Consensus       276 ~~V~IvG~~nvGKSSL~n~l~~~~~~iv-~~~pGvT~d~~~~~~~~-~~~~~~liDT~G~~~~~---~~~~~~~~~~~~~  350 (712)
T PRK09518        276 GVVAIVGRPNVGKSTLVNRILGRREAVV-EDTPGVTRDRVSYDAEW-AGTDFKLVDTGGWEADV---EGIDSAIASQAQI  350 (712)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCeeEEEEEEEEEE-CCEEEEEEeCCCcCCCC---ccHHHHHHHHHHH
Confidence            5799999999999999999999865444 35778888776666666 67789999999987422   2244455555556


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhhH-----HHH-HhhccchhhhhhhhHhhHHHHHH
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRGA-----TEL-RDQQAEVDSLKEYSKQEISKLMG  172 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-----~~l-~~~~~~i~~is~~~~~~i~~l~~  172 (231)
                      ++..+|++++|+|++++++..+..     .....|++ .++|+.+...     .++ ......++++||.+|.|+.++++
T Consensus       351 ~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvI-lV~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~GI~eLl~  429 (712)
T PRK09518        351 AVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVV-LAVNKIDDQASEYDAAEFWKLGLGEPYPISAMHGRGVGDLLD  429 (712)
T ss_pred             HHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEE-EEEECcccccchhhHHHHHHcCCCCeEEEECCCCCCchHHHH
Confidence            668899999999998777776653     22344444 3445544211     111 11223456799999999999998


Q ss_pred             HHHHHH
Q 038053          173 QMQESY  178 (231)
Q Consensus       173 ~i~~~~  178 (231)
                      .+...+
T Consensus       430 ~i~~~l  435 (712)
T PRK09518        430 EALDSL  435 (712)
T ss_pred             HHHHhc
Confidence            887654

>cd04163 Era Era subfamily

Probab=99.53  E-value=4.7e-13  Score=100.93  Aligned_cols=147  Identities=20%  Similarity=0.289  Sum_probs=88.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+++|++|+|||||+|.|+|....... .....+.......... .+..+.++||||+......   ....+......
T Consensus         4 ~~i~~~G~~g~GKttl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~---~~~~~~~~~~~   78 (168)
T cd04163           4 GFVAIVGRPNVGKSTLLNALVGQKISIVS-PKPQTTRNRIRGIYTD-DDAQIIFVDTPGIHKPKKK---LGERMVKAAWS   78 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCceEecc-CCCCceeceEEEEEEc-CCeEEEEEECCCCCcchHH---HHHHHHHHHHH
Confidence            68999999999999999999998754332 2223333222222222 4567889999998764321   12223333344


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhh--H-------HHHHhhc--cchhhhhhhhHhhH
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRG--A-------TELRDQQ--AEVDSLKEYSKQEI  167 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~--~-------~~l~~~~--~~i~~is~~~~~~i  167 (231)
                      ....+|.+++++|+++.+...+..     .....|.+ .++++.+..  .       ..+....  .+++.+|++++.++
T Consensus        79 ~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~i-iv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~  157 (168)
T cd04163          79 ALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVI-LVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENV  157 (168)
T ss_pred             HHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEE-EEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence            557889999999998554443322     12223332 233443321  0       2333333  26677899999999


Q ss_pred             HHHHHHHHH
Q 038053          168 SKLMGQMQE  176 (231)
Q Consensus       168 ~~l~~~i~~  176 (231)
                      ++++..+.+
T Consensus       158 ~~l~~~l~~  166 (168)
T cd04163         158 DELLEEIVK  166 (168)
T ss_pred             HHHHHHHHh
Confidence            998887754

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.52  E-value=3.2e-13  Score=117.79  Aligned_cols=153  Identities=16%  Similarity=0.252  Sum_probs=95.3

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHH
Q 038053           19 SSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIV   98 (231)
Q Consensus        19 ~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~   98 (231)
                      .++  .+|+|+|++|+|||||+|.|++...... ...+++|++.......+ .+..+.++||||+....   ..+...-.
T Consensus       201 ~~g--~kVvIvG~~nvGKSSLiN~L~~~~~aiv-s~~pgtTrd~~~~~i~~-~g~~v~l~DTaG~~~~~---~~ie~~gi  273 (442)
T TIGR00450       201 DDG--FKLAIVGSPNVGKSSLLNALLKQDRAIV-SDIKGTTRDVVEGDFEL-NGILIKLLDTAGIREHA---DFVERLGI  273 (442)
T ss_pred             hcC--CEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcEEEEEEEEEEE-CCEEEEEeeCCCcccch---hHHHHHHH
Confidence            456  8999999999999999999999865444 35677777765555555 77888999999987532   11211111


Q ss_pred             HHHhhhcCCccEEEEEEECCCCCCHHHHH----hcCCCCcHHHHHHHHHhhH---HHHHhhc-cchhhhhhhhHhhHHHH
Q 038053           99 KRIGLAKGGIHAVLVVFSVRSRFSQEEEA----ANGGQPYTDEFLAELKRGA---TELRDQQ-AEVDSLKEYSKQEISKL  170 (231)
Q Consensus        99 ~~~~~~~~~~~~il~vvd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~---~~l~~~~-~~i~~is~~~~~~i~~l  170 (231)
                      ......+..+|++++|+|++++.+..+..    .....|++ .+.|+.|...   ..+.... .+++.+|+++ .|++++
T Consensus       274 ~~~~~~~~~aD~il~V~D~s~~~s~~~~~l~~~~~~~~piI-lV~NK~Dl~~~~~~~~~~~~~~~~~~vSak~-~gI~~~  351 (442)
T TIGR00450       274 EKSFKAIKQADLVIYVLDASQPLTKDDFLIIDLNKSKKPFI-LVLNKIDLKINSLEFFVSSKVLNSSNLSAKQ-LKIKAL  351 (442)
T ss_pred             HHHHHHHhhCCEEEEEEECCCCCChhHHHHHHHhhCCCCEE-EEEECccCCCcchhhhhhhcCCceEEEEEec-CCHHHH
Confidence            22234457889999999998666544322    11233433 4556655211   1221111 1456688887 466666


Q ss_pred             HHHHHHHHHH
Q 038053          171 MGQMQESYED  180 (231)
Q Consensus       171 ~~~i~~~~~~  180 (231)
                      ++.+.....+
T Consensus       352 ~~~L~~~i~~  361 (442)
T TIGR00450       352 VDLLTQKINA  361 (442)
T ss_pred             HHHHHHHHHH
Confidence            6665554433

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.52  E-value=1.6e-13  Score=112.49  Aligned_cols=150  Identities=18%  Similarity=0.217  Sum_probs=107.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhh
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLA  104 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~  104 (231)
                      -|+|||-|||||||||+.++...+.+  .+.+.+|..+..+.+....+..+++.|.||+....+....++..+++++.++
T Consensus       161 DVGLVG~PNaGKSTlls~vS~AkPKI--adYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt  238 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVSAAKPKI--ADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERT  238 (369)
T ss_pred             ccccccCCCCcHHHHHHHHhhcCCcc--cCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhh
Confidence            48899999999999999999998754  3677778777777776546778999999999999888888999999988766


Q ss_pred             cCCccEEEEEEECCCCCC----HHHHH-----------hcCCCCcHHHHHHHHHh-----hH----HHHHhhccchhh--
Q 038053          105 KGGIHAVLVVFSVRSRFS----QEEEA-----------ANGGQPYTDEFLAELKR-----GA----TELRDQQAEVDS--  158 (231)
Q Consensus       105 ~~~~~~il~vvd~~~~~~----~~~~~-----------~~~~~~~~~~~~~~~~~-----~~----~~l~~~~~~i~~--  158 (231)
                          .++++|||++ ...    .++..           ....++. +.++++++.     +.    +.|.+.......  
T Consensus       239 ----~vL~hviD~s-~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~-ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~  312 (369)
T COG0536         239 ----RVLLHVIDLS-PIDGRDPIEDYQTIRNELEKYSPKLAEKPR-IVVLNKIDLPLDEEELEELKKALAEALGWEVFYL  312 (369)
T ss_pred             ----heeEEEEecC-cccCCCHHHHHHHHHHHHHHhhHHhccCce-EEEEeccCCCcCHHHHHHHHHHHHHhcCCCccee
Confidence                7999999997 332    12222           1122333 244555551     11    122222222212  


Q ss_pred             hhhhhHhhHHHHHHHHHHHHHHHH
Q 038053          159 LKEYSKQEISKLMGQMQESYEDQI  182 (231)
Q Consensus       159 is~~~~~~i~~l~~~i~~~~~~~~  182 (231)
                      ||+.++.|++.|+..+.+.+.+..
T Consensus       313 ISa~t~~g~~~L~~~~~~~l~~~~  336 (369)
T COG0536         313 ISALTREGLDELLRALAELLEETK  336 (369)
T ss_pred             eehhcccCHHHHHHHHHHHHHHhh
Confidence            899999999999999988766654

>cd01878 HflX HflX subfamily

Probab=99.50  E-value=1.4e-13  Score=108.38  Aligned_cols=147  Identities=19%  Similarity=0.207  Sum_probs=89.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+|+|++|||||||+|.|++......  ..+..|...............+.++||||+.+...  ......+.... .
T Consensus        42 ~~I~iiG~~g~GKStLl~~l~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~~~~-~  116 (204)
T cd01878          42 PTVALVGYTNAGKSTLFNALTGADVYAE--DQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLP--HQLVEAFRSTL-E  116 (204)
T ss_pred             CeEEEECCCCCCHHHHHHHHhcchhccC--CccceeccceeEEEEecCCceEEEeCCCccccCCC--HHHHHHHHHHH-H
Confidence            6999999999999999999999864322  23344444444444442334788999999865321  12222222222 2


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH--------hc-CCCCcHHHHHHHHHhhH-HH----HHhhccchhhhhhhhHhhHHH
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA--------AN-GGQPYTDEFLAELKRGA-TE----LRDQQAEVDSLKEYSKQEISK  169 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~~-~~----l~~~~~~i~~is~~~~~~i~~  169 (231)
                      ....+|++++|+|+++.....+..        .. ...|++ .++|++|... ..    +.....+++.+|++++.|++.
T Consensus       117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~vi-iV~NK~Dl~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  195 (204)
T cd01878         117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMI-LVLNKIDLLDDEELEERLEAGRPDAVFISAKTGEGLDE  195 (204)
T ss_pred             HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEE-EEEEccccCChHHHHHHhhcCCCceEEEEcCCCCCHHH
Confidence            346789999999998554433221        11 123333 4555655211 11    112223678899999999999


Q ss_pred             HHHHHHH
Q 038053          170 LMGQMQE  176 (231)
Q Consensus       170 l~~~i~~  176 (231)
                      ++..+..
T Consensus       196 l~~~L~~  202 (204)
T cd01878         196 LLEAIEE  202 (204)
T ss_pred             HHHHHHh
Confidence            9887654

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.48  E-value=2.6e-13  Score=110.73  Aligned_cols=99  Identities=25%  Similarity=0.213  Sum_probs=71.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      ++|.+.|+||+|||||++.|++..+-+  .+.|.+|....+++.+. ....+.++||||+.+.-. .+...-+....++ 
T Consensus       169 pTivVaG~PNVGKSSlv~~lT~AkpEv--A~YPFTTK~i~vGhfe~-~~~R~QvIDTPGlLDRPl-~ErN~IE~qAi~A-  243 (346)
T COG1084         169 PTIVVAGYPNVGKSSLVRKLTTAKPEV--APYPFTTKGIHVGHFER-GYLRIQVIDTPGLLDRPL-EERNEIERQAILA-  243 (346)
T ss_pred             CeEEEecCCCCcHHHHHHHHhcCCCcc--CCCCccccceeEeeeec-CCceEEEecCCcccCCCh-HHhcHHHHHHHHH-
Confidence            799999999999999999999998754  35677777778888777 788899999999976321 1211222222221 


Q ss_pred             hcCCccEEEEEEECC--CCCCHHHHH
Q 038053          104 AKGGIHAVLVVFSVR--SRFSQEEEA  127 (231)
Q Consensus       104 ~~~~~~~il~vvd~~--~~~~~~~~~  127 (231)
                      ...-.++|++++|++  |+++.++..
T Consensus       244 L~hl~~~IlF~~D~Se~cgy~lE~Q~  269 (346)
T COG1084         244 LRHLAGVILFLFDPSETCGYSLEEQI  269 (346)
T ss_pred             HHHhcCeEEEEEcCccccCCCHHHHH
Confidence            113457999999996  778877765

>cd01898 Obg Obg subfamily

Probab=99.48  E-value=7.2e-13  Score=100.94  Aligned_cols=144  Identities=19%  Similarity=0.213  Sum_probs=85.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCc-EEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQ-VVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .|+|||++|||||||+|.|++.... . ...++.|.....+.... .+. .+.++||||+.........+...+.    .
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~-v-~~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~----~   74 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPK-I-ADYPFTTLVPNLGVVRV-DDGRSFVVADIPGLIEGASEGKGLGHRFL----R   74 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCcc-c-cCCCccccCCcceEEEc-CCCCeEEEEecCcccCcccccCCchHHHH----H
Confidence            4899999999999999999987642 1 12344555555444444 444 7889999998643222222222222    2


Q ss_pred             hcCCccEEEEEEECCCC---CCHHHHH------hc---CCCCcHHHHHHHHHhhH--------HHHHhh--ccchhhhhh
Q 038053          104 AKGGIHAVLVVFSVRSR---FSQEEEA------AN---GGQPYTDEFLAELKRGA--------TELRDQ--QAEVDSLKE  161 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~---~~~~~~~------~~---~~~~~~~~~~~~~~~~~--------~~l~~~--~~~i~~is~  161 (231)
                      ....+|++++|+|+++.   +......      ..   ...|++ .++++.|...        ..+...  ..+++.+|+
T Consensus        75 ~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~i-vv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  153 (170)
T cd01898          75 HIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRI-VVLNKIDLLDEEELFELLKELLKELWGKPVFPISA  153 (170)
T ss_pred             HHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccE-EEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEec
Confidence            23567999999999854   1111111      10   123333 3444444210        112222  235778899


Q ss_pred             hhHhhHHHHHHHHHH
Q 038053          162 YSKQEISKLMGQMQE  176 (231)
Q Consensus       162 ~~~~~i~~l~~~i~~  176 (231)
                      +++.|+.+++..+.+
T Consensus       154 ~~~~gi~~l~~~i~~  168 (170)
T cd01898         154 LTGEGLDELLRKLAE  168 (170)
T ss_pred             CCCCCHHHHHHHHHh
Confidence            999999998877654

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.48  E-value=3.8e-14  Score=117.54  Aligned_cols=86  Identities=15%  Similarity=0.119  Sum_probs=66.8

Q ss_pred             CCCCCC-CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE--EeeCCcEEEE
Q 038053            1 MSSGMG-ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT--VLKDGQVVNV   77 (231)
Q Consensus         1 ~~~~~~-~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~l   77 (231)
                      ++|.|+ ++.++++++|++++|  ..+||+|+|||||||||++|+|...    ++.|.+.........  .......+++
T Consensus        10 l~k~~~~~~~~l~~vs~~i~~G--ei~gllG~NGAGKTTllk~l~gl~~----p~~G~i~i~G~~~~~~~~~~~~~igy~   83 (293)
T COG1131          10 LTKKYGGDKTALDGVSFEVEPG--EIFGLLGPNGAGKTTLLKILAGLLK----PTSGEILVLGYDVVKEPAKVRRRIGYV   83 (293)
T ss_pred             eEEEeCCCCEEEeceeEEEcCC--eEEEEECCCCCCHHHHHHHHhCCcC----CCceEEEEcCEeCccCHHHHHhheEEE
Confidence            468899 699999999999999  9999999999999999999999998    444544443322111  1114568999


Q ss_pred             EeCCCCcCCCCCchH
Q 038053           78 IDTPGLFDSSAGSEF   92 (231)
Q Consensus        78 ~Dtpg~~~~~~~~~~   92 (231)
                      ++.|.+++..++.+.
T Consensus        84 ~~~~~~~~~lT~~e~   98 (293)
T COG1131          84 PQEPSLYPELTVREN   98 (293)
T ss_pred             ccCCCCCccccHHHH
Confidence            999999997765443

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.48  E-value=3e-13  Score=101.68  Aligned_cols=143  Identities=18%  Similarity=0.207  Sum_probs=88.3

Q ss_pred             EEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhhcCC
Q 038053           28 LLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGG  107 (231)
Q Consensus        28 lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~  107 (231)
                      |+|++|+|||||+|.++|.....  ...+++|.........+ .+..+.++||||........  ....+...+... ..
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~--~~~~~~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~--~~~~~~~~~~~~-~~   74 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKV--GNWPGVTVEKKEGRFKL-GGKEIEIVDLPGTYSLSPYS--EDEKVARDFLLG-EK   74 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccc--cCCCCcccccceEEEee-CCeEEEEEECCCccccCCCC--hhHHHHHHHhcC-CC
Confidence            68999999999999999986322  13566676665555555 56788999999986533211  111222222222 68


Q ss_pred             ccEEEEEEECCCCCCHHHHH---hcCCCCcHHHHHHHHHhhH--------HHHHhhcc-chhhhhhhhHhhHHHHHHHHH
Q 038053          108 IHAVLVVFSVRSRFSQEEEA---ANGGQPYTDEFLAELKRGA--------TELRDQQA-EVDSLKEYSKQEISKLMGQMQ  175 (231)
Q Consensus       108 ~~~il~vvd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--------~~l~~~~~-~i~~is~~~~~~i~~l~~~i~  175 (231)
                      +|++++++|+.+.-......   .....|.+ .++++.|...        ..+...++ +++.+|+.++.|+..++..+.
T Consensus        75 ~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~i-iv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~  153 (158)
T cd01879          75 PDLIVNVVDATNLERNLYLTLQLLELGLPVV-VALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDELKDAIA  153 (158)
T ss_pred             CcEEEEEeeCCcchhHHHHHHHHHHcCCCEE-EEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCCCHHHHHHHHH
Confidence            89999999998422211111   22334443 3445544211        12222233 678899999999999887776


Q ss_pred             HH
Q 038053          176 ES  177 (231)
Q Consensus       176 ~~  177 (231)
                      ..
T Consensus       154 ~~  155 (158)
T cd01879         154 EL  155 (158)
T ss_pred             HH
Confidence            64

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.47  E-value=2.4e-13  Score=111.97  Aligned_cols=99  Identities=28%  Similarity=0.347  Sum_probs=62.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+++|.+|+|||||+|+|+|...+..+ ...+.+.......... .+..+.++||||+++.....+... +..+.+. 
T Consensus        39 ~rIllvGktGVGKSSliNsIlG~~v~~vs-~f~s~t~~~~~~~~~~-~G~~l~VIDTPGL~d~~~~~e~~~-~~ik~~l-  114 (313)
T TIGR00991        39 LTILVMGKGGVGKSSTVNSIIGERIATVS-AFQSEGLRPMMVSRTR-AGFTLNIIDTPGLIEGGYINDQAV-NIIKRFL-  114 (313)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCccccc-CCCCcceeEEEEEEEE-CCeEEEEEECCCCCchHHHHHHHH-HHHHHHh-
Confidence            79999999999999999999999865432 2223333322222333 788899999999997532222221 2222221 


Q ss_pred             hcCCccEEEEEEECC-CCCCHHHH
Q 038053          104 AKGGIHAVLVVFSVR-SRFSQEEE  126 (231)
Q Consensus       104 ~~~~~~~il~vvd~~-~~~~~~~~  126 (231)
                      ....+|++++|+.+. .+++..|.
T Consensus       115 ~~~g~DvVLyV~rLD~~R~~~~Dk  138 (313)
T TIGR00991       115 LGKTIDVLLYVDRLDAYRVDTLDG  138 (313)
T ss_pred             hcCCCCEEEEEeccCcccCCHHHH
Confidence            124799999997654 25555543

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.47  E-value=8.1e-14  Score=105.52  Aligned_cols=133  Identities=14%  Similarity=0.191  Sum_probs=78.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+++|++|+|||||+|.|+|....    ..  .|..     ..+ ...  .++||||++...   .....++    ..
T Consensus         2 ~~i~~iG~~~~GKstl~~~l~~~~~~----~~--~~~~-----v~~-~~~--~~iDtpG~~~~~---~~~~~~~----~~   60 (158)
T PRK15467          2 KRIAFVGAVGAGKTTLFNALQGNYTL----AR--KTQA-----VEF-NDK--GDIDTPGEYFSH---PRWYHAL----IT   60 (158)
T ss_pred             cEEEEECCCCCCHHHHHHHHcCCCcc----Cc--cceE-----EEE-CCC--CcccCCccccCC---HHHHHHH----HH
Confidence            37999999999999999999987541    11  1111     111 111  169999986432   1122222    23


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH---hcCCCCcHHHHHHHHHhh---HHHHHh---hc---cchhhhhhhhHhhHHHHH
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA---ANGGQPYTDEFLAELKRG---ATELRD---QQ---AEVDSLKEYSKQEISKLM  171 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~l~~---~~---~~i~~is~~~~~~i~~l~  171 (231)
                      .+..+|++++|+|+++..+.....   .....|.+ .++++.+..   ...+.+   ..   .|++++|+++|+|+++++
T Consensus        61 ~~~~ad~il~v~d~~~~~s~~~~~~~~~~~~~~ii-~v~nK~Dl~~~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~  139 (158)
T PRK15467         61 TLQDVDMLIYVHGANDPESRLPAGLLDIGVSKRQI-AVISKTDMPDADVAATRKLLLETGFEEPIFELNSHDPQSVQQLV  139 (158)
T ss_pred             HHhcCCEEEEEEeCCCcccccCHHHHhccCCCCeE-EEEEccccCcccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHH
Confidence            357889999999998543322211   11222322 333443311   111111   12   278889999999999999


Q ss_pred             HHHHHHH
Q 038053          172 GQMQESY  178 (231)
Q Consensus       172 ~~i~~~~  178 (231)
                      ..+.+..
T Consensus       140 ~~l~~~~  146 (158)
T PRK15467        140 DYLASLT  146 (158)
T ss_pred             HHHHHhc
Confidence            8887754

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.47  E-value=1.5e-14  Score=111.83  Aligned_cols=88  Identities=23%  Similarity=0.242  Sum_probs=70.2

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee----EEeeCCcEEE
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT----TVLKDGQVVN   76 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~   76 (231)
                      ++|.||+..+|+++++++.+|  ..++||||+|||||||+++|.+...    ++.|.++.+.....    ....+...++
T Consensus         8 l~K~fg~~~VLkgi~l~v~~G--evv~iiGpSGSGKSTlLRclN~LE~----~~~G~I~i~g~~~~~~~~~~~~R~~vGm   81 (240)
T COG1126           8 LSKSFGDKEVLKGISLSVEKG--EVVVIIGPSGSGKSTLLRCLNGLEE----PDSGSITVDGEDVGDKKDILKLRRKVGM   81 (240)
T ss_pred             eeEEeCCeEEecCcceeEcCC--CEEEEECCCCCCHHHHHHHHHCCcC----CCCceEEECCEeccchhhHHHHHHhcCe
Confidence            478999999999999999999  9999999999999999999999998    45555555442111    1111456788


Q ss_pred             EEeCCCCcCCCCCchHHH
Q 038053           77 VIDTPGLFDSSAGSEFVG   94 (231)
Q Consensus        77 l~Dtpg~~~~~~~~~~~~   94 (231)
                      +++...+|++.++.+++-
T Consensus        82 VFQ~fnLFPHlTvleNv~   99 (240)
T COG1126          82 VFQQFNLFPHLTVLENVT   99 (240)
T ss_pred             ecccccccccchHHHHHH
Confidence            999999999988776553

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.46  E-value=4.4e-13  Score=98.39  Aligned_cols=129  Identities=17%  Similarity=0.248  Sum_probs=79.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+|||++|||||||+++|.|....      ..-|....+      .+   .+|||||-|-.       ...+...+..
T Consensus         2 krimliG~~g~GKTTL~q~L~~~~~~------~~KTq~i~~------~~---~~IDTPGEyiE-------~~~~y~aLi~   59 (143)
T PF10662_consen    2 KRIMLIGPSGSGKTTLAQALNGEEIR------YKKTQAIEY------YD---NTIDTPGEYIE-------NPRFYHALIV   59 (143)
T ss_pred             ceEEEECCCCCCHHHHHHHHcCCCCC------cCccceeEe------cc---cEEECChhhee-------CHHHHHHHHH
Confidence            58999999999999999999998752      111221111      11   26999996631       1224444455


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH--hcCCCCcHHHHHHHHHhh--H-------HHHHh-hccchhhhhhhhHhhHHHHH
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA--ANGGQPYTDEFLAELKRG--A-------TELRD-QQAEVDSLKEYSKQEISKLM  171 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~-------~~l~~-~~~~i~~is~~~~~~i~~l~  171 (231)
                      ....+|.|+++.|+++........  .....|.+ -++++.|..  .       +.|+. ....++.+|+.+|+|+++|.
T Consensus        60 ta~dad~V~ll~dat~~~~~~pP~fa~~f~~pvI-GVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~  138 (143)
T PF10662_consen   60 TAQDADVVLLLQDATEPRSVFPPGFASMFNKPVI-GVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELK  138 (143)
T ss_pred             HHhhCCEEEEEecCCCCCccCCchhhcccCCCEE-EEEECccCccchhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHH
Confidence            557889999999998654444333  11223332 222222211  0       12221 12378899999999999998


Q ss_pred             HHHH
Q 038053          172 GQMQ  175 (231)
Q Consensus       172 ~~i~  175 (231)
                      +.+.
T Consensus       139 ~~L~  142 (143)
T PF10662_consen  139 DYLE  142 (143)
T ss_pred             HHHh
Confidence            8764

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.46  E-value=7.1e-14  Score=109.81  Aligned_cols=84  Identities=17%  Similarity=0.230  Sum_probs=69.6

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeC
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDT   80 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dt   80 (231)
                      ++|.||+..+++|++|.+++|  ...||+|+|||||||+|++|+|...    ++.|.++.......... ..+.+|++..
T Consensus         8 vtK~Fg~k~av~~isf~v~~G--~i~GllG~NGAGKTTtfRmILglle----~~~G~I~~~g~~~~~~~-~~rIGyLPEE   80 (300)
T COG4152           8 VTKSFGDKKAVDNISFEVPPG--EIFGLLGPNGAGKTTTFRMILGLLE----PTEGEITWNGGPLSQEI-KNRIGYLPEE   80 (300)
T ss_pred             chhccCceeeecceeeeecCC--eEEEeecCCCCCccchHHHHhccCC----ccCceEEEcCcchhhhh-hhhcccChhh
Confidence            589999999999999999999  9999999999999999999999998    45666665443333333 5788999999


Q ss_pred             CCCcCCCCCch
Q 038053           81 PGLFDSSAGSE   91 (231)
Q Consensus        81 pg~~~~~~~~~   91 (231)
                      -|+|+..++.+
T Consensus        81 RGLy~k~tv~d   91 (300)
T COG4152          81 RGLYPKMTVED   91 (300)
T ss_pred             hccCccCcHHH
Confidence            99998766544

>cd04171 SelB SelB subfamily

Probab=99.44  E-value=3.6e-12  Score=96.26  Aligned_cols=139  Identities=19%  Similarity=0.241  Sum_probs=82.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccc-cCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKAS-ADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .|+++|++|||||||+|+|+|....... ...+++|............+..+.++||||...           +...+..
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~-----------~~~~~~~   70 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEK-----------FIKNMLA   70 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHH-----------HHHHHHh
Confidence            6899999999999999999986421110 112344554444444442266788999999632           2222333


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH------hcCCCCcHHHHHHHHHhh--------HHHHHhhc-------cchhhhhhh
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA------ANGGQPYTDEFLAELKRG--------ATELRDQQ-------AEVDSLKEY  162 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~--------~~~l~~~~-------~~i~~is~~  162 (231)
                      .+..+|++++|+|+++.+......      .....|++ .++++.|..        ..++.+.+       .+++++|++
T Consensus        71 ~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~i-lv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  149 (164)
T cd04171          71 GAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGL-VVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAV  149 (164)
T ss_pred             hhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEE-EEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCC
Confidence            456789999999998654433322      11122433 233333310        01222221       267889999


Q ss_pred             hHhhHHHHHHHHH
Q 038053          163 SKQEISKLMGQMQ  175 (231)
Q Consensus       163 ~~~~i~~l~~~i~  175 (231)
                      ++.|+++++..+.
T Consensus       150 ~~~~v~~l~~~l~  162 (164)
T cd04171         150 TGEGIEELKEYLD  162 (164)
T ss_pred             CCcCHHHHHHHHh
Confidence            9999999887764

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.44  E-value=6.6e-13  Score=107.29  Aligned_cols=93  Identities=20%  Similarity=0.236  Sum_probs=68.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCC-chHHHHHHHHHHh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAG-SEFVGKEIVKRIG  102 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~-~~~~~~~~~~~~~  102 (231)
                      ..||+||.||+|||||.|.+.|...+... ....+|+....+.... ....+++.||||+...... ...+...++....
T Consensus        73 L~vavIG~PNvGKStLtN~mig~kv~~vS-~K~~TTr~~ilgi~ts-~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~  150 (379)
T KOG1423|consen   73 LYVAVIGAPNVGKSTLTNQMIGQKVSAVS-RKVHTTRHRILGIITS-GETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPR  150 (379)
T ss_pred             EEEEEEcCCCcchhhhhhHhhCCcccccc-ccccceeeeeeEEEec-CceEEEEecCCcccccchhhhHHHHHHhhhCHH
Confidence            68999999999999999999999876653 3334444333333333 7788999999998754322 2334444555667


Q ss_pred             hhcCCccEEEEEEECC
Q 038053          103 LAKGGIHAVLVVFSVR  118 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~  118 (231)
                      .+...+|.++.++|++
T Consensus       151 ~a~q~AD~vvVv~Das  166 (379)
T KOG1423|consen  151 DAAQNADCVVVVVDAS  166 (379)
T ss_pred             HHHhhCCEEEEEEecc
Confidence            7778999999999997

>cd01900 YchF YchF subfamily

Probab=99.44  E-value=7.6e-13  Score=108.16  Aligned_cols=87  Identities=18%  Similarity=0.205  Sum_probs=65.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC----------------cEEEEEeCCCCcCCCCC
Q 038053           26 VVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG----------------QVVNVIDTPGLFDSSAG   89 (231)
Q Consensus        26 i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~l~Dtpg~~~~~~~   89 (231)
                      |||||.||||||||||+|++.....  .+.+++|.+...+.......                ..+.++|+||+....+.
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~--~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~   78 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEA--ANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   78 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCcc--ccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch
Confidence            6899999999999999999998732  35678887777766555222                14889999999987665


Q ss_pred             chHHHHHHHHHHhhhcCCccEEEEEEECC
Q 038053           90 SEFVGKEIVKRIGLAKGGIHAVLVVFSVR  118 (231)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~il~vvd~~  118 (231)
                      ...++..++..    +..+|++++|||+.
T Consensus        79 ~~glg~~fL~~----i~~~D~li~VV~~f  103 (274)
T cd01900          79 GEGLGNKFLSH----IREVDAIAHVVRCF  103 (274)
T ss_pred             hhHHHHHHHHH----HHhCCEEEEEEeCc
Confidence            55666555544    35679999999975

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.43  E-value=2.4e-13  Score=104.03  Aligned_cols=141  Identities=20%  Similarity=0.265  Sum_probs=85.1

Q ss_pred             EEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeC-CcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhhcC
Q 038053           28 LLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKG  106 (231)
Q Consensus        28 lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~  106 (231)
                      |+|++|||||||+|+|++.... . ...+++|.......... . +..+.++||||+.......+.+...+.    ..+.
T Consensus         1 iiG~~~~GKStll~~l~~~~~~-~-~~~~~~t~~~~~~~~~~-~~~~~~~i~DtpG~~~~~~~~~~~~~~~~----~~~~   73 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPK-V-ANYPFTTLEPNLGVVEV-PDGARIQVADIPGLIEGASEGRGLGNQFL----AHIR   73 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCcc-c-cCCCceeecCcceEEEc-CCCCeEEEEeccccchhhhcCCCccHHHH----HHHh
Confidence            5899999999999999998642 1 23455565555554444 5 788899999998653322222222222    2235


Q ss_pred             CccEEEEEEECCCCC-----CHH-HHH--------hc--------CCCCcHHHHHHHHHhhH-HHHHh---------hcc
Q 038053          107 GIHAVLVVFSVRSRF-----SQE-EEA--------AN--------GGQPYTDEFLAELKRGA-TELRD---------QQA  154 (231)
Q Consensus       107 ~~~~il~vvd~~~~~-----~~~-~~~--------~~--------~~~~~~~~~~~~~~~~~-~~l~~---------~~~  154 (231)
                      .+|++++|+|+.+..     ... +..        ..        ...|.+ .++++.|... ..+..         ...
T Consensus        74 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~NK~Dl~~~~~~~~~~~~~~~~~~~~  152 (176)
T cd01881          74 RADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVI-YVLNKIDLDDAEELEEELVRELALEEGA  152 (176)
T ss_pred             ccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeE-EEEEchhcCchhHHHHHHHHHHhcCCCC
Confidence            689999999998542     221 111        11        233443 3445554211 11111         112


Q ss_pred             chhhhhhhhHhhHHHHHHHHHH
Q 038053          155 EVDSLKEYSKQEISKLMGQMQE  176 (231)
Q Consensus       155 ~i~~is~~~~~~i~~l~~~i~~  176 (231)
                      +++.+|++++.|++++++.+..
T Consensus       153 ~~~~~Sa~~~~gl~~l~~~l~~  174 (176)
T cd01881         153 EVVPISAKTEEGLDELIRAIYE  174 (176)
T ss_pred             CEEEEehhhhcCHHHHHHHHHh
Confidence            6778899999999998887654

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.43  E-value=3.1e-12  Score=103.56  Aligned_cols=99  Identities=32%  Similarity=0.384  Sum_probs=64.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+|+|++|+|||||+|+|+|...+..+ ...+.|.......... .+..+.++||||+.+.... ......+...+..
T Consensus        32 ~~IllvG~tGvGKSSliNaLlg~~~~~v~-~~~~~T~~~~~~~~~~-~g~~i~vIDTPGl~~~~~~-~~~~~~~~~~I~~  108 (249)
T cd01853          32 LTILVLGKTGVGKSSTINSIFGERKAATS-AFQSETLRVREVSGTV-DGFKLNIIDTPGLLESVMD-QRVNRKILSSIKR  108 (249)
T ss_pred             eEEEEECCCCCcHHHHHHHHhCCCCcccC-CCCCceEEEEEEEEEE-CCeEEEEEECCCcCcchhh-HHHHHHHHHHHHH
Confidence            89999999999999999999999865543 3444555554444444 6778999999999875321 1122222222222


Q ss_pred             hc--CCccEEEEEEECC-CCCCHHH
Q 038053          104 AK--GGIHAVLVVFSVR-SRFSQEE  125 (231)
Q Consensus       104 ~~--~~~~~il~vvd~~-~~~~~~~  125 (231)
                      ..  ..+|+++++..+. .+++..+
T Consensus       109 ~l~~~~idvIL~V~rlD~~r~~~~d  133 (249)
T cd01853         109 YLKKKTPDVVLYVDRLDMYRRDYLD  133 (249)
T ss_pred             HHhccCCCEEEEEEcCCCCCCCHHH
Confidence            22  3678888887665 2344443

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.43  E-value=1.6e-12  Score=100.42  Aligned_cols=99  Identities=16%  Similarity=0.272  Sum_probs=62.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCC-ccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHH---H
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRK-AFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEI---V   98 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~---~   98 (231)
                      ...|+++|.+|+|||||+|.|++.. .... ....+.|........   . ..+.++||||+......... ...+   .
T Consensus        18 ~~~i~ivG~~~~GKStlin~l~~~~~~~~~-~~~~~~t~~~~~~~~---~-~~~~liDtpG~~~~~~~~~~-~~~~~~~~   91 (179)
T TIGR03598        18 GPEIAFAGRSNVGKSSLINALTNRKKLART-SKTPGRTQLINFFEV---N-DGFRLVDLPGYGYAKVSKEE-KEKWQKLI   91 (179)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCCCcccc-cCCCCcceEEEEEEe---C-CcEEEEeCCCCccccCChhH-HHHHHHHH
Confidence            3799999999999999999999975 2222 134455654443322   2 36789999998653321111 1111   1


Q ss_pred             HHHhhhcCCccEEEEEEECCCCCCHHHHH
Q 038053           99 KRIGLAKGGIHAVLVVFSVRSRFSQEEEA  127 (231)
Q Consensus        99 ~~~~~~~~~~~~il~vvd~~~~~~~~~~~  127 (231)
                      ..+......++++++|+|++.+++..+..
T Consensus        92 ~~~l~~~~~~~~ii~vvd~~~~~~~~~~~  120 (179)
T TIGR03598        92 EEYLEKRENLKGVVLLMDIRHPLKELDLE  120 (179)
T ss_pred             HHHHHhChhhcEEEEEecCCCCCCHHHHH
Confidence            11222224578999999998777776653

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.43  E-value=4.4e-12  Score=96.48  Aligned_cols=147  Identities=21%  Similarity=0.186  Sum_probs=84.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCch-HHHHHHHHHHh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSE-FVGKEIVKRIG  102 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~-~~~~~~~~~~~  102 (231)
                      ++|+++|++|+|||||+|.|++......  ..++.|.......... .+..+.++||||+.+...... .+.......  
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~--   75 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKPEVA--PYPFTTKSLFVGHFDY-KYLRWQVIDTPGLLDRPLEERNTIEMQAITA--   75 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCccC--CCCCcccceeEEEEcc-CceEEEEEECCCcCCccccCCchHHHHHHHH--
Confidence            3799999999999999999999865321  2334455444444433 567889999999854221111 111111111  


Q ss_pred             hhcCCccEEEEEEECCCCCC--HHHHH------hc--CCCCcHHHHHHHHHhhH----H---HHHhh-ccchhhhhhhhH
Q 038053          103 LAKGGIHAVLVVFSVRSRFS--QEEEA------AN--GGQPYTDEFLAELKRGA----T---ELRDQ-QAEVDSLKEYSK  164 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~--~~~~~------~~--~~~~~~~~~~~~~~~~~----~---~l~~~-~~~i~~is~~~~  164 (231)
                       .....|++++|+|+++...  ..+..      ..  ...|.+ .++++.|...    .   .+... ..+++.+|+++|
T Consensus        76 -~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvi-lv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  153 (168)
T cd01897          76 -LAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVI-VVLNKIDLLTFEDLSEIEEEEELEGEEVLKISTLTE  153 (168)
T ss_pred             -HHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeE-EEEEccccCchhhHHHHHHhhhhccCceEEEEeccc
Confidence             1123588999999985322  12211      11  133333 3445544211    1   11111 126777899999


Q ss_pred             hhHHHHHHHHHHH
Q 038053          165 QEISKLMGQMQES  177 (231)
Q Consensus       165 ~~i~~l~~~i~~~  177 (231)
                      .|++++++.+...
T Consensus       154 ~gi~~l~~~l~~~  166 (168)
T cd01897         154 EGVDEVKNKACEL  166 (168)
T ss_pred             CCHHHHHHHHHHH
Confidence            9999998877653

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.43  E-value=7.8e-13  Score=106.34  Aligned_cols=88  Identities=22%  Similarity=0.286  Sum_probs=62.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhh
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLA  104 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~  104 (231)
                      +|+|+|+||+|||||+|.|+|......  ..+.+|..+..+.... .+..+.++||||+.+...........+    ...
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~--~~~~tT~~~~~g~~~~-~~~~i~l~DtpG~~~~~~~~~~~~~~~----l~~   74 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVA--AYEFTTLTCVPGVLEY-KGAKIQLLDLPGIIEGAADGKGRGRQV----IAV   74 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCcccc--CCCCccccceEEEEEE-CCeEEEEEECCCcccccccchhHHHHH----HHh
Confidence            689999999999999999999875322  3555666555555555 778889999999876432222222222    234


Q ss_pred             cCCccEEEEEEECCC
Q 038053          105 KGGIHAVLVVFSVRS  119 (231)
Q Consensus       105 ~~~~~~il~vvd~~~  119 (231)
                      ...+|.+++|+|+++
T Consensus        75 ~~~ad~il~V~D~t~   89 (233)
T cd01896          75 ARTADLILMVLDATK   89 (233)
T ss_pred             hccCCEEEEEecCCc
Confidence            578899999999874

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.42  E-value=1.5e-13  Score=111.81  Aligned_cols=101  Identities=20%  Similarity=0.237  Sum_probs=76.2

Q ss_pred             cccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHH
Q 038053           14 WKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFV   93 (231)
Q Consensus        14 ~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~   93 (231)
                      ..|.+++.+.-.++|||+|++|||||||.|++......  +.+.+|..+..+.... ++..+.++|+||+..+.+.....
T Consensus        54 ~gf~V~KsGda~v~lVGfPsvGKStLL~~LTnt~seva--~y~FTTl~~VPG~l~Y-~ga~IQild~Pgii~gas~g~gr  130 (365)
T COG1163          54 SGFAVKKSGDATVALVGFPSVGKSTLLNKLTNTKSEVA--DYPFTTLEPVPGMLEY-KGAQIQLLDLPGIIEGASSGRGR  130 (365)
T ss_pred             CcceEeccCCeEEEEEcCCCccHHHHHHHHhCCCcccc--ccCceecccccceEee-cCceEEEEcCcccccCcccCCCC
Confidence            35667766668999999999999999999999976432  4555555555555555 89999999999999877666555


Q ss_pred             HHHHHHHHhhhcCCccEEEEEEECCCCC
Q 038053           94 GKEIVKRIGLAKGGIHAVLVVFSVRSRF  121 (231)
Q Consensus        94 ~~~~~~~~~~~~~~~~~il~vvd~~~~~  121 (231)
                      +.+++.    ....+|.+++|+|+....
T Consensus       131 G~~vls----v~R~ADlIiiVld~~~~~  154 (365)
T COG1163         131 GRQVLS----VARNADLIIIVLDVFEDP  154 (365)
T ss_pred             cceeee----eeccCCEEEEEEecCCCh
Confidence            555443    346779999999997443

>PRK04213 GTP-binding protein; Provisional

Probab=99.41  E-value=3.3e-12  Score=100.30  Aligned_cols=147  Identities=19%  Similarity=0.215  Sum_probs=84.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHH----
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIV----   98 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~----   98 (231)
                      ..+|+++|++|||||||+|.|+|.... . ...+++|.....  ... .  .+.++||||+...........+.+.    
T Consensus         9 ~~~i~i~G~~~~GKSsLin~l~~~~~~-~-~~~~~~t~~~~~--~~~-~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   81 (201)
T PRK04213          9 KPEIVFVGRSNVGKSTLVRELTGKKVR-V-GKRPGVTRKPNH--YDW-G--DFILTDLPGFGFMSGVPKEVQEKIKDEIV   81 (201)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCc-c-CCCCceeeCceE--Eee-c--ceEEEeCCccccccccCHHHHHHHHHHHH
Confidence            378999999999999999999997642 2 134455554322  222 2  5789999997543322222122222    


Q ss_pred             HHHhhhcCCccEEEEEEECCCC------CCH-----HHHH-----hcCCCCcHHHHHHHHHh------hHHHHHhhcc--
Q 038053           99 KRIGLAKGGIHAVLVVFSVRSR------FSQ-----EEEA-----ANGGQPYTDEFLAELKR------GATELRDQQA--  154 (231)
Q Consensus        99 ~~~~~~~~~~~~il~vvd~~~~------~~~-----~~~~-----~~~~~~~~~~~~~~~~~------~~~~l~~~~~--  154 (231)
                      .++......++++++|+|..+.      |..     .+..     .....|++ .++|+.|.      ...++.+.++  
T Consensus        82 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~i-iv~NK~Dl~~~~~~~~~~~~~~~~~~  160 (201)
T PRK04213         82 RYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPI-VAVNKMDKIKNRDEVLDEIAERLGLY  160 (201)
T ss_pred             HHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeE-EEEECccccCcHHHHHHHHHHHhcCC
Confidence            2223234567899999998632      110     0110     12234443 34444331      1123333222  


Q ss_pred             --------chhhhhhhhHhhHHHHHHHHHHHH
Q 038053          155 --------EVDSLKEYSKQEISKLMGQMQESY  178 (231)
Q Consensus       155 --------~i~~is~~~~~~i~~l~~~i~~~~  178 (231)
                              +++.+||++| |+++++..+...+
T Consensus       161 ~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~  191 (201)
T PRK04213        161 PPWRQWQDIIAPISAKKG-GIEELKEAIRKRL  191 (201)
T ss_pred             ccccccCCcEEEEecccC-CHHHHHHHHHHhh
Confidence                    3678999999 9999988887654

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.41  E-value=7.9e-13  Score=117.44  Aligned_cols=92  Identities=32%  Similarity=0.418  Sum_probs=63.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+|+|++|+|||||+|+|+|...+.+....++ |+......... .+..+.|+||||+++.... .....++...+..
T Consensus       119 lrIvLVGKTGVGKSSLINSILGekvf~vss~~~~-TTr~~ei~~~i-dG~~L~VIDTPGL~dt~~d-q~~neeILk~Ik~  195 (763)
T TIGR00993       119 LNILVLGKSGVGKSATINSIFGEVKFSTDAFGMG-TTSVQEIEGLV-QGVKIRVIDTPGLKSSASD-QSKNEKILSSVKK  195 (763)
T ss_pred             eEEEEECCCCCCHHHHHHHHhccccccccCCCCC-ceEEEEEEEEE-CCceEEEEECCCCCccccc-hHHHHHHHHHHHH
Confidence            5899999999999999999999987766432334 44433333333 6788999999999986432 2233444444433


Q ss_pred             hc--CCccEEEEEEECC
Q 038053          104 AK--GGIHAVLVVFSVR  118 (231)
Q Consensus       104 ~~--~~~~~il~vvd~~  118 (231)
                      .+  ..+|++|+|+.+.
T Consensus       196 ~Lsk~gpDVVLlV~RLd  212 (763)
T TIGR00993       196 FIKKNPPDIVLYVDRLD  212 (763)
T ss_pred             HHhcCCCCEEEEEEeCC
Confidence            32  3689999999876

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.41  E-value=1.5e-11  Score=96.06  Aligned_cols=148  Identities=18%  Similarity=0.250  Sum_probs=84.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCC-ccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchH--HHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRK-AFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEF--VGKEIVKR  100 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~--~~~~~~~~  100 (231)
                      ..|+++|.+|+|||||+|.|++.. .... ....++|.......    .+..+.++||||+.........  ....+...
T Consensus        25 ~~v~ivG~~~~GKSsli~~l~~~~~~~~~-~~~~~~t~~~~~~~----~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~   99 (196)
T PRK00454         25 PEIAFAGRSNVGKSSLINALTNRKNLART-SKTPGRTQLINFFE----VNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEE   99 (196)
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCCCCcccc-cCCCCceeEEEEEe----cCCeEEEeCCCCCCCcCCCchHHHHHHHHHHH
Confidence            789999999999999999999964 2222 23344554433221    2467889999997643221111  11122222


Q ss_pred             HhhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHh------hH--HHHHhhc----cchhhhhhhh
Q 038053          101 IGLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKR------GA--TELRDQQ----AEVDSLKEYS  163 (231)
Q Consensus       101 ~~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~------~~--~~l~~~~----~~i~~is~~~  163 (231)
                      +......++.+++++|.+...+..+..     .....++. .+.++++.      +.  ..+...+    .+++++|+++
T Consensus       100 ~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~i-iv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~  178 (196)
T PRK00454        100 YLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVL-IVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFSSLK  178 (196)
T ss_pred             HHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEE-EEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEEcCC
Confidence            223335667888999987666554432     11223322 12222221      00  1222222    3677889999


Q ss_pred             HhhHHHHHHHHHHH
Q 038053          164 KQEISKLMGQMQES  177 (231)
Q Consensus       164 ~~~i~~l~~~i~~~  177 (231)
                      +.|+++++..+.+.
T Consensus       179 ~~gi~~l~~~i~~~  192 (196)
T PRK00454        179 KQGIDELRAAIAKW  192 (196)
T ss_pred             CCCHHHHHHHHHHH
Confidence            99999998877654

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.41  E-value=1.8e-14  Score=113.26  Aligned_cols=88  Identities=22%  Similarity=0.135  Sum_probs=66.4

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee----EEeeCCcEEE
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT----TVLKDGQVVN   76 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~   76 (231)
                      ++|+||+-.++++++|++.+|  .+++||||||||||||+|.|+|...+    +.|.++.......    .....-....
T Consensus        10 l~k~FGGl~Al~~Vsl~v~~G--ei~~LIGPNGAGKTTlfNlitG~~~P----~~G~v~~~G~~it~l~p~~iar~Gi~R   83 (250)
T COG0411          10 LSKRFGGLTAVNDVSLEVRPG--EIVGLIGPNGAGKTTLFNLITGFYKP----SSGTVIFRGRDITGLPPHRIARLGIAR   83 (250)
T ss_pred             ceeecCCEEEEeceeEEEcCC--eEEEEECCCCCCceeeeeeecccccC----CCceEEECCcccCCCCHHHHHhcccee
Confidence            578999999999999999999  99999999999999999999999984    4443332221100    0011234566


Q ss_pred             EEeCCCCcCCCCCchHHH
Q 038053           77 VIDTPGLFDSSAGSEFVG   94 (231)
Q Consensus        77 l~Dtpg~~~~~~~~~~~~   94 (231)
                      -+|++-+++..++.+++.
T Consensus        84 TFQ~~rlF~~lTVlENv~  101 (250)
T COG0411          84 TFQITRLFPGLTVLENVA  101 (250)
T ss_pred             ecccccccCCCcHHHHHH
Confidence            789999999888776653

>PTZ00258 GTP-binding protein; Provisional

Probab=99.41  E-value=2.1e-12  Score=110.10  Aligned_cols=89  Identities=16%  Similarity=0.180  Sum_probs=67.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeC----------------CcEEEEEeCCCCcCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKD----------------GQVVNVIDTPGLFDSS   87 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~l~Dtpg~~~~~   87 (231)
                      ..|+|||.||+|||||||+|++.....  .+.+++|.++..+.+....                ...+.++||||+....
T Consensus        22 ~kvgIVG~PNvGKSTLfnaLt~~~~~v--~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga   99 (390)
T PTZ00258         22 LKMGIVGLPNVGKSTTFNALCKQQVPA--ENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGA   99 (390)
T ss_pred             cEEEEECCCCCChHHHHHHHhcCcccc--cCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCC
Confidence            799999999999999999999987533  3568888777776665421                2247899999999766


Q ss_pred             CCchHHHHHHHHHHhhhcCCccEEEEEEECC
Q 038053           88 AGSEFVGKEIVKRIGLAKGGIHAVLVVFSVR  118 (231)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~  118 (231)
                      .....++..++..    +..+|++++|+|+.
T Consensus       100 ~~g~gLg~~fL~~----Ir~aD~il~VVd~f  126 (390)
T PTZ00258        100 SEGEGLGNAFLSH----IRAVDGIYHVVRAF  126 (390)
T ss_pred             cchhHHHHHHHHH----HHHCCEEEEEEeCC
Confidence            5545565555544    35679999999985

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.41  E-value=2.1e-13  Score=113.59  Aligned_cols=90  Identities=20%  Similarity=0.144  Sum_probs=68.9

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE-EeeCCcEEEEEe
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT-VLKDGQVVNVID   79 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~l~D   79 (231)
                      ++|.||...+++++++++.+|  ..++|+||||||||||+|+|+|...+    +.|.+......... .-......++++
T Consensus         9 v~K~yg~~~~l~~i~l~i~~G--ef~vllGPSGcGKSTlLr~IAGLe~~----~~G~I~i~g~~vt~l~P~~R~iamVFQ   82 (338)
T COG3839           9 VRKSFGSFEVLKDVNLDIEDG--EFVVLLGPSGCGKSTLLRMIAGLEEP----TSGEILIDGRDVTDLPPEKRGIAMVFQ   82 (338)
T ss_pred             eEEEcCCceeeecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CCceEEECCEECCCCChhHCCEEEEeC
Confidence            367888777999999999999  99999999999999999999999984    44433332222111 111456889999


Q ss_pred             CCCCcCCCCCchHHHHH
Q 038053           80 TPGLFDSSAGSEFVGKE   96 (231)
Q Consensus        80 tpg~~~~~~~~~~~~~~   96 (231)
                      .+-+||+.++.+++..-
T Consensus        83 ~yALyPhmtV~~Niaf~   99 (338)
T COG3839          83 NYALYPHMTVYENIAFG   99 (338)
T ss_pred             CccccCCCcHHHHhhhh
Confidence            99999998887766443

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.40  E-value=2.2e-12  Score=108.80  Aligned_cols=89  Identities=19%  Similarity=0.200  Sum_probs=66.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC----------------cEEEEEeCCCCcCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG----------------QVVNVIDTPGLFDSS   87 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~l~Dtpg~~~~~   87 (231)
                      ..|||||.||||||||||+|++.... . .+.+++|.++..+.......                ..+.++|+||+.+..
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~-v-~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a   80 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAE-A-ANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA   80 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCe-e-cccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence            68999999999999999999998842 2 35678887777665544221                247899999999766


Q ss_pred             CCchHHHHHHHHHHhhhcCCccEEEEEEECC
Q 038053           88 AGSEFVGKEIVKRIGLAKGGIHAVLVVFSVR  118 (231)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~  118 (231)
                      .....++..++..    +..+|++++|||+.
T Consensus        81 ~~g~glg~~fL~~----i~~aD~li~VVd~f  107 (364)
T PRK09601         81 SKGEGLGNQFLAN----IREVDAIVHVVRCF  107 (364)
T ss_pred             ChHHHHHHHHHHH----HHhCCEEEEEEeCC
Confidence            5545555555544    35779999999985

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.40  E-value=8.9e-13  Score=100.22  Aligned_cols=138  Identities=14%  Similarity=0.081  Sum_probs=81.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccc--cCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKAS--ADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      +|+++|++|+|||||+|.|++......+  ......|.......... .+..+.++||||...           +.....
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~~~~   68 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEV-GNARLKFWDLGGQES-----------LRSLWD   68 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEE-CCEEEEEEECCCChh-----------hHHHHH
Confidence            4899999999999999999875432111  11223333333333444 678889999999754           111222


Q ss_pred             hhcCCccEEEEEEECCCCCCHHHHH------h----cCCCCcHHHHHHHHHhhH----HHHHhhc-----------cchh
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEEEA------A----NGGQPYTDEFLAELKRGA----TELRDQQ-----------AEVD  157 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~~~------~----~~~~~~~~~~~~~~~~~~----~~l~~~~-----------~~i~  157 (231)
                      ..+..+|++++|+|+++.-+.....      .    ....|++ .++++.|...    ..+...+           -+++
T Consensus        69 ~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (167)
T cd04160          69 KYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLL-ILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVL  147 (167)
T ss_pred             HHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEE-EEEEccccccCCCHHHHHHHhccccccccCCceEEE
Confidence            3457889999999997432211111      0    1233443 3445544211    1121111           1577


Q ss_pred             hhhhhhHhhHHHHHHHHH
Q 038053          158 SLKEYSKQEISKLMGQMQ  175 (231)
Q Consensus       158 ~is~~~~~~i~~l~~~i~  175 (231)
                      .+|+++|.|+++++..+.
T Consensus       148 ~~Sa~~g~gv~e~~~~l~  165 (167)
T cd04160         148 PVSALEGTGVREGIEWLV  165 (167)
T ss_pred             EeeCCCCcCHHHHHHHHh
Confidence            899999999998877654

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.38  E-value=2.4e-12  Score=97.74  Aligned_cols=139  Identities=14%  Similarity=0.194  Sum_probs=83.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEee--CCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLK--DGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      .|+++|.+|+|||||+|.|++......  ..++.|...........  .+..+.++||||...           +.....
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~-----------~~~~~~   68 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAG--EAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEA-----------FTNMRA   68 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccc--cCCCeEEeeccEEEecccCCcceEEEEeCCCcHH-----------HHHHHH
Confidence            699999999999999999998764221  23344544333333331  256889999999643           111112


Q ss_pred             hhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhhH-------HHHHh---h----c---cchhhhh
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRGA-------TELRD---Q----Q---AEVDSLK  160 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-------~~l~~---~----~---~~i~~is  160 (231)
                      .....+|++++|+|+++........     .....|.+ .++++++...       ..+..   .    .   .+++.+|
T Consensus        69 ~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~i-vv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  147 (168)
T cd01887          69 RGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFI-VALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTS  147 (168)
T ss_pred             HHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEE-EEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEee
Confidence            2346789999999998654433322     12233333 2333333110       11111   0    1   1567789


Q ss_pred             hhhHhhHHHHHHHHHHH
Q 038053          161 EYSKQEISKLMGQMQES  177 (231)
Q Consensus       161 ~~~~~~i~~l~~~i~~~  177 (231)
                      +.+|.|+.+++..+...
T Consensus       148 a~~~~gi~~l~~~l~~~  164 (168)
T cd01887         148 AKTGEGIDDLLEAILLL  164 (168)
T ss_pred             cccCCCHHHHHHHHHHh
Confidence            99999999998887664

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.38  E-value=4.2e-13  Score=106.16  Aligned_cols=135  Identities=10%  Similarity=0.064  Sum_probs=83.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccc-----------------------------cCCCCcceeeeeeeEEeeCCcEE
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKAS-----------------------------ADSSGVTKTCEMKTTVLKDGQVV   75 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~~~~~~~   75 (231)
                      +|+++|++|+|||||++.|++.......                             ....++|.+.......+ .+..+
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~   79 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFST-PKRKF   79 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEec-CCceE
Confidence            5899999999999999999876543220                             01145666655555555 67789


Q ss_pred             EEEeCCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhhH----
Q 038053           76 NVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRGA----  146 (231)
Q Consensus        76 ~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~----  146 (231)
                      .++||||..+           +...+...+..+|++++|+|++.++...+..     .....+.++.++|++|...    
T Consensus        80 ~liDTpG~~~-----------~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~  148 (208)
T cd04166          80 IIADTPGHEQ-----------YTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEE  148 (208)
T ss_pred             EEEECCcHHH-----------HHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHH
Confidence            9999999632           1122223457889999999998776555432     1122233223345544210    


Q ss_pred             ------HHHHhh---cc----chhhhhhhhHhhHHHHH
Q 038053          147 ------TELRDQ---QA----EVDSLKEYSKQEISKLM  171 (231)
Q Consensus       147 ------~~l~~~---~~----~i~~is~~~~~~i~~l~  171 (231)
                            .++...   ++    +++++|+++|.|+.+..
T Consensus       149 ~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~~  186 (208)
T cd04166         149 VFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSRS  186 (208)
T ss_pred             HHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccCC
Confidence                  122211   11    37789999998887543

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.37  E-value=4.4e-13  Score=112.32  Aligned_cols=90  Identities=21%  Similarity=0.155  Sum_probs=70.4

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEEeeCCcEEEEEe
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTVLKDGQVVNVID   79 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~D   79 (231)
                      ++|.||+..+++|+++++.+|  ..++|+||||||||||+++|.|...+    +.|.+....... .....+....++++
T Consensus        11 v~k~yg~~~av~~isl~i~~G--ef~~lLGPSGcGKTTlLR~IAGfe~p----~~G~I~l~G~~i~~lpp~kR~ig~VFQ   84 (352)
T COG3842          11 VSKSFGDFTAVDDISLDIKKG--EFVTLLGPSGCGKTTLLRMIAGFEQP----SSGEILLDGEDITDVPPEKRPIGMVFQ   84 (352)
T ss_pred             eeeecCCeeEEecceeeecCC--cEEEEECCCCCCHHHHHHHHhCCCCC----CCceEEECCEECCCCChhhcccceeec
Confidence            478999999999999999999  99999999999999999999999984    444333322211 12222456788999


Q ss_pred             CCCCcCCCCCchHHHHH
Q 038053           80 TPGLFDSSAGSEFVGKE   96 (231)
Q Consensus        80 tpg~~~~~~~~~~~~~~   96 (231)
                      ..-+||+.++.+++..-
T Consensus        85 ~YALFPHltV~~NVafG  101 (352)
T COG3842          85 SYALFPHMTVEENVAFG  101 (352)
T ss_pred             CcccCCCCcHHHHhhhh
Confidence            99999999888775443

>cd04154 Arl2 Arl2 subfamily

Probab=99.37  E-value=2.3e-12  Score=98.77  Aligned_cols=134  Identities=14%  Similarity=0.151  Sum_probs=80.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+++|++|||||||+|.+++......     ..|.......... .+..+.++||||...           +......
T Consensus        15 ~kv~ivG~~~~GKTsL~~~l~~~~~~~~-----~~t~g~~~~~~~~-~~~~l~l~D~~G~~~-----------~~~~~~~   77 (173)
T cd04154          15 MRILILGLDNAGKTTILKKLLGEDIDTI-----SPTLGFQIKTLEY-EGYKLNIWDVGGQKT-----------LRPYWRN   77 (173)
T ss_pred             cEEEEECCCCCCHHHHHHHHccCCCCCc-----CCccccceEEEEE-CCEEEEEEECCCCHH-----------HHHHHHH
Confidence            6899999999999999999998844211     1122112222333 566788999999653           1111223


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH----------hcCCCCcHHHHHHHHHhh----HHHHHhhc---------cchhhhh
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA----------ANGGQPYTDEFLAELKRG----ATELRDQQ---------AEVDSLK  160 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~----~~~l~~~~---------~~i~~is  160 (231)
                      .+..+|++++|+|.++.-+..+..          .....|++ .+.++.|..    ..++...+         -+++.+|
T Consensus        78 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-iv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  156 (173)
T cd04154          78 YFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLL-ILANKQDLPGALSEEEIREALELDKISSHHWRIQPCS  156 (173)
T ss_pred             HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEE-EEEECcccccCCCHHHHHHHhCccccCCCceEEEecc
Confidence            356889999999998542222211          11223333 344444421    02232222         1678899


Q ss_pred             hhhHhhHHHHHHHHH
Q 038053          161 EYSKQEISKLMGQMQ  175 (231)
Q Consensus       161 ~~~~~~i~~l~~~i~  175 (231)
                      |++|.|+++++..+.
T Consensus       157 a~~g~gi~~l~~~l~  171 (173)
T cd04154         157 AVTGEGLLQGIDWLV  171 (173)
T ss_pred             CCCCcCHHHHHHHHh
Confidence            999999999887664

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.37  E-value=1.4e-12  Score=102.08  Aligned_cols=133  Identities=18%  Similarity=0.187  Sum_probs=81.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccc--------------cCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKAS--------------ADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAG   89 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~--------------~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~   89 (231)
                      .+|+++|+.|+|||||+++|++.......              ....+.|.........+ .+..+.++||||..+    
T Consensus         3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~~----   77 (195)
T cd01884           3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYET-ANRHYAHVDCPGHAD----   77 (195)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecC-CCeEEEEEECcCHHH----
Confidence            68999999999999999999865211000              01345555544444444 567889999999642    


Q ss_pred             chHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhh--H-------HHHHhhc--
Q 038053           90 SEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRG--A-------TELRDQQ--  153 (231)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~--~-------~~l~~~~--  153 (231)
                             +...+...+..+|.+++|+|+..++...+..     ...+.+.++.+++++|.-  .       .++...+  
T Consensus        78 -------~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~  150 (195)
T cd01884          78 -------YIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSK  150 (195)
T ss_pred             -------HHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHH
Confidence                   3333444557889999999998777766644     223334222223333310  0       1232222  


Q ss_pred             -------cchhhhhhhhHhhHH
Q 038053          154 -------AEVDSLKEYSKQEIS  168 (231)
Q Consensus       154 -------~~i~~is~~~~~~i~  168 (231)
                             -+++++|+++|.++.
T Consensus       151 ~g~~~~~v~iipiSa~~g~n~~  172 (195)
T cd01884         151 YGFDGDNTPIVRGSALKALEGD  172 (195)
T ss_pred             hcccccCCeEEEeeCccccCCC
Confidence                   157889999987753

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.36  E-value=3.2e-11  Score=108.89  Aligned_cols=140  Identities=17%  Similarity=0.236  Sum_probs=91.2

Q ss_pred             cCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhhcCCcc
Q 038053           30 GRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIH  109 (231)
Q Consensus        30 G~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (231)
                      |++|+|||||+|.++|.... . .+.+++|.+........ .+..+.++||||.++.....  ..+.+...+. ....+|
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~-v-~n~pG~Tv~~~~~~i~~-~~~~i~lvDtPG~~~~~~~s--~~e~v~~~~l-~~~~aD   74 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQT-V-GNWPGVTVEKKEGKLGF-QGEDIEIVDLPGIYSLTTFS--LEEEVARDYL-LNEKPD   74 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCe-e-cCCCCeEEEEEEEEEEE-CCeEEEEEECCCccccCccc--hHHHHHHHHH-hhcCCC
Confidence            89999999999999998753 2 25778888776655555 66778999999998643221  1122222221 225789


Q ss_pred             EEEEEEECCCCCCHHHHH----hcCCCCcHHHHHHHHHhh--------HHHHHhhcc-chhhhhhhhHhhHHHHHHHHHH
Q 038053          110 AVLVVFSVRSRFSQEEEA----ANGGQPYTDEFLAELKRG--------ATELRDQQA-EVDSLKEYSKQEISKLMGQMQE  176 (231)
Q Consensus       110 ~il~vvd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--------~~~l~~~~~-~i~~is~~~~~~i~~l~~~i~~  176 (231)
                      ++++|+|+++ +......    ...+.|.+ .+.|+.|..        .+.+.+.++ +++++|+++|.|++++++.+.+
T Consensus        75 vvI~VvDat~-ler~l~l~~ql~~~~~PiI-IVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~  152 (591)
T TIGR00437        75 LVVNVVDASN-LERNLYLTLQLLELGIPMI-LALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLKDAIRK  152 (591)
T ss_pred             EEEEEecCCc-chhhHHHHHHHHhcCCCEE-EEEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHH
Confidence            9999999983 3322111    22344443 334444421        124444444 7888999999999999999876


Q ss_pred             H
Q 038053          177 S  177 (231)
Q Consensus       177 ~  177 (231)
                      .
T Consensus       153 ~  153 (591)
T TIGR00437       153 A  153 (591)
T ss_pred             H
Confidence            4

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.36  E-value=2.7e-12  Score=98.60  Aligned_cols=118  Identities=19%  Similarity=0.153  Sum_probs=75.4

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE--EeeCCcEEEEEe
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT--VLKDGQVVNVID   79 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~l~D   79 (231)
                      ++.|++.++++++++++.+|  ..++|+|+||+|||||+++|+|...+    ..|.++........  ........++++
T Consensus         7 ~~~~~~~~~l~~~~~~i~~G--e~~~i~G~nGsGKStLl~~l~G~~~~----~~G~i~~~g~~~~~~~~~~~~~i~~~~q   80 (173)
T cd03230           7 SKRYGKKTALDDISLTVEKG--EIYGLLGPNGAGKTTLIKIILGLLKP----DSGEIKVLGKDIKKEPEEVKRRIGYLPE   80 (173)
T ss_pred             EEEECCeeeeeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCC----CCeEEEECCEEcccchHhhhccEEEEec
Confidence            45667678999999999999  99999999999999999999999763    33333322211000  011345678899


Q ss_pred             CCCCcCCCCCchHH----HHHHHHHHhhhcCCccEEEEEEECCCCCCHHH
Q 038053           80 TPGLFDSSAGSEFV----GKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEE  125 (231)
Q Consensus        80 tpg~~~~~~~~~~~----~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~  125 (231)
                      .|.+++..+..+++    ++.-+-.+..++.....++++-+++..++...
T Consensus        81 ~~~~~~~~tv~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~  130 (173)
T cd03230          81 EPSLYENLTVRENLKLSGGMKQRLALAQALLHDPELLILDEPTSGLDPES  130 (173)
T ss_pred             CCccccCCcHHHHhhcCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHH
Confidence            88887765554442    22222223334344446666777774454433

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.35  E-value=8.4e-12  Score=97.12  Aligned_cols=142  Identities=18%  Similarity=0.297  Sum_probs=91.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccc----------------cCCCCcceeeeeeeEE-eeCCcEEEEEeCCCCcCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKAS----------------ADSSGVTKTCEMKTTV-LKDGQVVNVIDTPGLFDS   86 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~----------------~~~~~~t~~~~~~~~~-~~~~~~~~l~Dtpg~~~~   86 (231)
                      .+|+++|+.|+|||||++.|++.......                ....+.|......... ......+.++||||..+ 
T Consensus         4 ~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~-   82 (188)
T PF00009_consen    4 RNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED-   82 (188)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH-
T ss_pred             EEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc-
Confidence            68999999999999999999976532110                0113444444444444 12788999999999543 


Q ss_pred             CCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhhH-------HHHHhh--
Q 038053           87 SAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRGA-------TELRDQ--  152 (231)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-------~~l~~~--  152 (231)
                                +..........+|.+++|||+.+++......     .....|++ .++|++|.-.       +++.+.  
T Consensus        83 ----------f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~i-vvlNK~D~~~~~~~~~~~~~~~~l~  151 (188)
T PF00009_consen   83 ----------FIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPII-VVLNKMDLIEKELEEIIEEIKEKLL  151 (188)
T ss_dssp             ----------HHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEE-EEEETCTSSHHHHHHHHHHHHHHHH
T ss_pred             ----------eeecccceecccccceeeeecccccccccccccccccccccceE-EeeeeccchhhhHHHHHHHHHHHhc
Confidence                      3333444567889999999998788876655     23334432 2233333110       122211  


Q ss_pred             ---------ccchhhhhhhhHhhHHHHHHHHHHH
Q 038053          153 ---------QAEVDSLKEYSKQEISKLMGQMQES  177 (231)
Q Consensus       153 ---------~~~i~~is~~~~~~i~~l~~~i~~~  177 (231)
                               .-+++++|+.+|.|+..|++.+...
T Consensus       152 ~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~  185 (188)
T PF00009_consen  152 KEYGENGEEIVPVIPISALTGDGIDELLEALVEL  185 (188)
T ss_dssp             HHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred             cccccCccccceEEEEecCCCCCHHHHHHHHHHh
Confidence                     1268899999999999999888764

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.35  E-value=1.7e-12  Score=100.20  Aligned_cols=118  Identities=21%  Similarity=0.159  Sum_probs=73.6

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eE----EeeCCcEEE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TT----VLKDGQVVN   76 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~----~~~~~~~~~   76 (231)
                      ++.|++++++++++|++++|  .+++|+|+||+|||||+++|+|...+    ..|.+....... ..    ........+
T Consensus         7 ~~~~~~~~~l~~i~~~i~~G--~~~~i~G~nGsGKSTLl~~l~G~~~~----~~G~i~~~g~~~~~~~~~~~~~~~~i~~   80 (178)
T cd03229           7 SKRYGQKTVLNDVSLNIEAG--EIVALLGPSGSGKSTLLRCIAGLEEP----DSGSILIDGEDLTDLEDELPPLRRRIGM   80 (178)
T ss_pred             EEEECCeEEEeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CceEEEECCEEccccchhHHHHhhcEEE
Confidence            45677788999999999999  99999999999999999999999763    333333222110 00    011345677


Q ss_pred             EEeCCCCcCCCCCchHH------HHHHHHHHhhhcCCccEEEEEEECCCCCCHHH
Q 038053           77 VIDTPGLFDSSAGSEFV------GKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEE  125 (231)
Q Consensus        77 l~Dtpg~~~~~~~~~~~------~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~  125 (231)
                      +.+.|.+++..+..+++      +..-+-.+..++.....++++-++..+++...
T Consensus        81 ~~q~~~~~~~~t~~~~l~~~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~  135 (178)
T cd03229          81 VFQDFALFPHLTVLENIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPIT  135 (178)
T ss_pred             EecCCccCCCCCHHHheeecCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHH
Confidence            88888887655544432      12222222333333335555666664444433

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd00879 Sar1 Sar1 subfamily

Probab=99.35  E-value=2.5e-12  Score=100.02  Aligned_cols=146  Identities=10%  Similarity=0.047  Sum_probs=85.5

Q ss_pred             cCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCC
Q 038053           10 IDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAG   89 (231)
Q Consensus        10 ~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~   89 (231)
                      +++++++...+   .+|+++|++|||||||+|.+++......     ..|.......... .+..+.++|+||...    
T Consensus         9 ~~~~~~~~~~~---~ki~ilG~~~~GKStLi~~l~~~~~~~~-----~~T~~~~~~~i~~-~~~~~~l~D~~G~~~----   75 (190)
T cd00879           9 VLSSLGLYNKE---AKILFLGLDNAGKTTLLHMLKDDRLAQH-----VPTLHPTSEELTI-GNIKFKTFDLGGHEQ----   75 (190)
T ss_pred             HHHHhhcccCC---CEEEEECCCCCCHHHHHHHHhcCCCccc-----CCccCcceEEEEE-CCEEEEEEECCCCHH----
Confidence            45566666555   4899999999999999999998654211     1122222223333 567788999999542    


Q ss_pred             chHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH------h----cCCCCcHHHHHHHHHhh----HHHHHhhc--
Q 038053           90 SEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA------A----NGGQPYTDEFLAELKRG----ATELRDQQ--  153 (231)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~------~----~~~~~~~~~~~~~~~~~----~~~l~~~~--  153 (231)
                             +.......+..+|.+++|+|.++.-+.....      .    ....|++ .+.++.|..    ..++...+  
T Consensus        76 -------~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvi-vv~NK~Dl~~~~~~~~~~~~~~~  147 (190)
T cd00879          76 -------ARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFL-ILGNKIDLPGAVSEEELRQALGL  147 (190)
T ss_pred             -------HHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEE-EEEeCCCCCCCcCHHHHHHHhCc
Confidence                   1111223346789999999998432111111      1    1123333 334444421    02222211  


Q ss_pred             ------------------cchhhhhhhhHhhHHHHHHHHHH
Q 038053          154 ------------------AEVDSLKEYSKQEISKLMGQMQE  176 (231)
Q Consensus       154 ------------------~~i~~is~~~~~~i~~l~~~i~~  176 (231)
                                        -+++.+||.+|.|+.+++.-+.+
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~  188 (190)
T cd00879         148 YGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQ  188 (190)
T ss_pred             ccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHh
Confidence                              14677899999999998887654

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.35  E-value=1.9e-13  Score=108.11  Aligned_cols=86  Identities=24%  Similarity=0.223  Sum_probs=68.6

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee----eEEeeCCcEEE
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK----TTVLKDGQVVN   76 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~   76 (231)
                      +||.|+++.+++++||++++|  ..++|+|++||||||++++|.+...+    +.|.+.......    .... +...+|
T Consensus         7 vsk~y~~~~av~~v~l~I~~g--ef~vliGpSGsGKTTtLkMINrLiep----t~G~I~i~g~~i~~~d~~~L-Rr~IGY   79 (309)
T COG1125           7 VSKRYGNKKAVDDVNLTIEEG--EFLVLIGPSGSGKTTTLKMINRLIEP----TSGEILIDGEDISDLDPVEL-RRKIGY   79 (309)
T ss_pred             eehhcCCceeeeeeeEEecCC--eEEEEECCCCCcHHHHHHHHhcccCC----CCceEEECCeecccCCHHHH-HHhhhh
Confidence            589999999999999999999  99999999999999999999999884    444433322111    1122 457889


Q ss_pred             EEeCCCCcCCCCCchHH
Q 038053           77 VIDTPGLFDSSAGSEFV   93 (231)
Q Consensus        77 l~Dtpg~~~~~~~~~~~   93 (231)
                      +++.-|++++.++.+++
T Consensus        80 viQqigLFPh~Tv~eNI   96 (309)
T COG1125          80 VIQQIGLFPHLTVAENI   96 (309)
T ss_pred             hhhhcccCCCccHHHHH
Confidence            99999999998877654

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.35  E-value=4e-12  Score=95.13  Aligned_cols=134  Identities=19%  Similarity=0.164  Sum_probs=76.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhhc
Q 038053           26 VVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAK  105 (231)
Q Consensus        26 i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~  105 (231)
                      |+|+|++|||||||+|.|++......    ...|.......... .+..+.++|+||...           +.......+
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~----~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~-----------~~~~~~~~~   65 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSED----TIPTVGFNMRKVTK-GNVTLKVWDLGGQPR-----------FRSMWERYC   65 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcC----ccCCCCcceEEEEE-CCEEEEEEECCCCHh-----------HHHHHHHHH
Confidence            79999999999999999999864211    11122222222223 456788999999643           111222334


Q ss_pred             CCccEEEEEEECCCCCCHHH--HH----h----cCCCCcHHHHHHHHHhhH----HHHHhhc---------cchhhhhhh
Q 038053          106 GGIHAVLVVFSVRSRFSQEE--EA----A----NGGQPYTDEFLAELKRGA----TELRDQQ---------AEVDSLKEY  162 (231)
Q Consensus       106 ~~~~~il~vvd~~~~~~~~~--~~----~----~~~~~~~~~~~~~~~~~~----~~l~~~~---------~~i~~is~~  162 (231)
                      ..+|.+++|+|+++..+...  ..    .    ....|++ .++++.+...    ..+....         .++..+|+.
T Consensus        66 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  144 (159)
T cd04159          66 RGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLL-VLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCK  144 (159)
T ss_pred             hcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEE-EEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEec
Confidence            67899999999984222111  00    0    1223332 2334333110    1111111         145778999


Q ss_pred             hHhhHHHHHHHHHH
Q 038053          163 SKQEISKLMGQMQE  176 (231)
Q Consensus       163 ~~~~i~~l~~~i~~  176 (231)
                      +|.|+++++..+.+
T Consensus       145 ~~~gi~~l~~~l~~  158 (159)
T cd04159         145 EKTNIDIVLDWLIK  158 (159)
T ss_pred             cCCChHHHHHHHhh
Confidence            99999998887653

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd04155 Arl3 Arl3 subfamily

Probab=99.34  E-value=3.9e-12  Score=97.26  Aligned_cols=135  Identities=17%  Similarity=0.195  Sum_probs=78.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      ..+|+++|++|||||||++.|+|.......+. .+.+    ...... .+..+.++|+||...           +.....
T Consensus        14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t-~g~~----~~~i~~-~~~~~~~~D~~G~~~-----------~~~~~~   76 (173)
T cd04155          14 EPRILILGLDNAGKTTILKQLASEDISHITPT-QGFN----IKTVQS-DGFKLNVWDIGGQRA-----------IRPYWR   76 (173)
T ss_pred             ccEEEEEccCCCCHHHHHHHHhcCCCcccCCC-CCcc----eEEEEE-CCEEEEEEECCCCHH-----------HHHHHH
Confidence            37999999999999999999999754222111 1111    222333 567788999999642           112222


Q ss_pred             hhcCCccEEEEEEECCCCCCHHH--HH--------hcCCCCcHHHHHHHHHhh----HHHHHhhcc---------chhhh
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEE--EA--------ANGGQPYTDEFLAELKRG----ATELRDQQA---------EVDSL  159 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~--~~--------~~~~~~~~~~~~~~~~~~----~~~l~~~~~---------~i~~i  159 (231)
                      ..+..+|.+++++|..+.-+..+  ..        .....|++ .++++.|..    ...+.+.++         ++..+
T Consensus        77 ~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~  155 (173)
T cd04155          77 NYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVL-VFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQAC  155 (173)
T ss_pred             HHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEE-EEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEe
Confidence            33467899999999974211111  11        01122332 223333310    112222222         35678


Q ss_pred             hhhhHhhHHHHHHHHH
Q 038053          160 KEYSKQEISKLMGQMQ  175 (231)
Q Consensus       160 s~~~~~~i~~l~~~i~  175 (231)
                      |+++|+|++++++.+.
T Consensus       156 Sa~~~~gi~~~~~~l~  171 (173)
T cd04155         156 SAKTGEGLQEGMNWVC  171 (173)
T ss_pred             ECCCCCCHHHHHHHHh
Confidence            9999999999887664

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.34  E-value=1.1e-11  Score=95.83  Aligned_cols=140  Identities=17%  Similarity=0.181  Sum_probs=82.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccC--------------CCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCc
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASAD--------------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGS   90 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~   90 (231)
                      +|+++|.+|||||||+|.|++.........              ..+.|.......... .+..+.++||||....    
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~liDtpG~~~~----   75 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW-PDRRVNFIDTPGHEDF----   75 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee-CCEEEEEEeCCCcHHH----
Confidence            489999999999999999998865322100              122333333333333 5677889999997541    


Q ss_pred             hHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhh-----------H-HHHHh--
Q 038053           91 EFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRG-----------A-TELRD--  151 (231)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-----------~-~~l~~--  151 (231)
                             .......+..+|++++|+|..+........     .....+++ .++++.|..           . +.+..  
T Consensus        76 -------~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~-iv~nK~D~~~~~~~~~~~~~~~~~~~~~~  147 (189)
T cd00881          76 -------SSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPII-VAINKIDRVGEEDLEEVLREIKELLGLIG  147 (189)
T ss_pred             -------HHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeE-EEEECCCCcchhcHHHHHHHHHHHHcccc
Confidence                   111222335789999999998655544333     11122222 122222210           0 11111  


Q ss_pred             ------------hccchhhhhhhhHhhHHHHHHHHHHH
Q 038053          152 ------------QQAEVDSLKEYSKQEISKLMGQMQES  177 (231)
Q Consensus       152 ------------~~~~i~~is~~~~~~i~~l~~~i~~~  177 (231)
                                  ...+++++|++.|.|+.+++..+...
T Consensus       148 ~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~  185 (189)
T cd00881         148 FISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEH  185 (189)
T ss_pred             ccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhh
Confidence                        12367789999999999998877653

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.34  E-value=3.3e-13  Score=108.47  Aligned_cols=47  Identities=26%  Similarity=0.291  Sum_probs=43.9

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF   49 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~   49 (231)
                      ++.+|+++.++++++|++++|  ..++|+||||||||||+++|+|...+
T Consensus         8 ls~~y~~~~il~~ls~~i~~G--~i~~iiGpNG~GKSTLLk~l~g~l~p   54 (258)
T COG1120           8 LSFGYGGKPILDDLSFSIPKG--EITGILGPNGSGKSTLLKCLAGLLKP   54 (258)
T ss_pred             EEEEECCeeEEecceEEecCC--cEEEEECCCCCCHHHHHHHHhccCCC
Confidence            356899999999999999999  99999999999999999999998874

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.34  E-value=6.4e-13  Score=112.40  Aligned_cols=87  Identities=23%  Similarity=0.191  Sum_probs=64.5

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee--EEeeCCcEEEEE
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT--TVLKDGQVVNVI   78 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~l~   78 (231)
                      +++.|++..++++++|++++|  .++||+|+||||||||+++|+|...+    +.|.+........  ........++++
T Consensus        47 l~k~y~~~~~l~~is~~i~~G--ei~gLlGpNGaGKSTLl~~L~Gl~~p----~~G~i~i~G~~~~~~~~~~~~~ig~v~  120 (340)
T PRK13536         47 VSKSYGDKAVVNGLSFTVASG--ECFGLLGPNGAGKSTIARMILGMTSP----DAGKITVLGVPVPARARLARARIGVVP  120 (340)
T ss_pred             EEEEECCEEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHcCCCC----CceEEEECCEECCcchHHHhccEEEEe
Confidence            367889889999999999999  99999999999999999999999873    4443333221110  001135678899


Q ss_pred             eCCCCcCCCCCchHH
Q 038053           79 DTPGLFDSSAGSEFV   93 (231)
Q Consensus        79 Dtpg~~~~~~~~~~~   93 (231)
                      |.+.+++..+..+.+
T Consensus       121 q~~~~~~~~tv~e~l  135 (340)
T PRK13536        121 QFDNLDLEFTVRENL  135 (340)
T ss_pred             CCccCCCCCcHHHHH
Confidence            999988766655443

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=99.34  E-value=2.7e-12  Score=104.53  Aligned_cols=150  Identities=15%  Similarity=0.187  Sum_probs=90.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      ..|++||++|||||||+|.|++......  +.-.-|.++..+....+.+..+.+.||.||....  ...+...|...+..
T Consensus       179 pviavVGYTNaGKsTLikaLT~Aal~p~--drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdL--P~~LvaAF~ATLee  254 (410)
T KOG0410|consen  179 PVIAVVGYTNAGKSTLIKALTKAALYPN--DRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDL--PIQLVAAFQATLEE  254 (410)
T ss_pred             ceEEEEeecCccHHHHHHHHHhhhcCcc--chhheeccchhhhccCCCCcEEEEeechhhhhhC--cHHHHHHHHHHHHH
Confidence            6999999999999999999997654322  2223344444444445578889999999998633  23333444433333


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH-----hcC-C---CCcHH---HHHHHHHhhHHHHHhhccchhhhhhhhHhhHHHHH
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA-----ANG-G---QPYTD---EFLAELKRGATELRDQQAEVDSLKEYSKQEISKLM  171 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~-----~~~-~---~~~~~---~~~~~~~~~~~~l~~~~~~i~~is~~~~~~i~~l~  171 (231)
                       ...+|++++|+|.+.+.-.+.+.     .+. +   .|...   .+-++++.+...+.+--+..+.+|+.+|.|+++++
T Consensus       255 -VaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E~n~~v~isaltgdgl~el~  333 (410)
T KOG0410|consen  255 -VAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEEKNLDVGISALTGDGLEELL  333 (410)
T ss_pred             -HhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCccccCCccccccccCccHHHHH
Confidence             26789999999998433222222     111 1   12221   12222221111111111136778999999999999


Q ss_pred             HHHHHHH
Q 038053          172 GQMQESY  178 (231)
Q Consensus       172 ~~i~~~~  178 (231)
                      +.+....
T Consensus       334 ~a~~~kv  340 (410)
T KOG0410|consen  334 KAEETKV  340 (410)
T ss_pred             HHHHHHh
Confidence            9887643

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.34  E-value=4.7e-12  Score=99.79  Aligned_cols=140  Identities=11%  Similarity=0.096  Sum_probs=80.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCc-cccccCCCCcceeeeeeeEEee--------------------------------C
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKA-FKASADSSGVTKTCEMKTTVLK--------------------------------D   71 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~--------------------------------~   71 (231)
                      +||++|++|+|||||+.+|++... ...+....+.|.........+.                                .
T Consensus         2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (203)
T cd01888           2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL   81 (203)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence            699999999999999999998732 1111112222222221111110                                1


Q ss_pred             CcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCC-CCHHHHH------hcCCCCcHHHHHHHHHh
Q 038053           72 GQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSR-FSQEEEA------ANGGQPYTDEFLAELKR  144 (231)
Q Consensus        72 ~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~-~~~~~~~------~~~~~~~~~~~~~~~~~  144 (231)
                      ...+.++||||..           .+...+......+|.+++|+|+.+. .......      .....+++ .+++++|.
T Consensus        82 ~~~i~~iDtPG~~-----------~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~ii-ivvNK~Dl  149 (203)
T cd01888          82 VRHVSFVDCPGHE-----------ILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHII-IVQNKIDL  149 (203)
T ss_pred             ccEEEEEECCChH-----------HHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEE-EEEEchhc
Confidence            2678899999942           2334444455678999999999853 2222111      11222332 34444442


Q ss_pred             hH--------HHHHhhc-------cchhhhhhhhHhhHHHHHHHHHH
Q 038053          145 GA--------TELRDQQ-------AEVDSLKEYSKQEISKLMGQMQE  176 (231)
Q Consensus       145 ~~--------~~l~~~~-------~~i~~is~~~~~~i~~l~~~i~~  176 (231)
                      ..        +.+.+.+       .+++++|+++|.|++.++..+.+
T Consensus       150 ~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~  196 (203)
T cd01888         150 VKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVK  196 (203)
T ss_pred             cCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHH
Confidence            10        1233222       15778999999999999887765

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>cd04124 RabL2 RabL2 subfamily

Probab=99.34  E-value=1.5e-11  Score=93.13  Aligned_cols=138  Identities=14%  Similarity=0.126  Sum_probs=78.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee--eEEe-eCCcEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK--TTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~--~~~~-~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      +|+++|.+|||||||++.+++..-.    .....|......  .... .....+.+.||||...           +....
T Consensus         2 ki~vvG~~~vGKTsli~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~~~~   66 (161)
T cd04124           2 KIILLGDSAVGKSKLVERFLMDGYE----PQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQER-----------FQTMH   66 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCC----CCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchh-----------hhhhh
Confidence            6899999999999999998876531    111112111111  1111 0233567899999543           11122


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH--------hcCCCCcHHHHHHHHHhhH------HHHHhhc-cchhhhhhhhHhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------ANGGQPYTDEFLAELKRGA------TELRDQQ-AEVDSLKEYSKQE  166 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~------~~l~~~~-~~i~~is~~~~~~  166 (231)
                      ...+..+|++++|+|++++.+..+..        .....|++ .+.++.|...      ..+.... .+++.+|+++|.|
T Consensus        67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~i-vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  145 (161)
T cd04124          67 ASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCI-VVANKIDLDPSVTQKKFNFAEKHNLPLYYVSAADGTN  145 (161)
T ss_pred             HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEE-EEEECccCchhHHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence            33456889999999998554433321        11123333 3334433110      1121111 2567889999999


Q ss_pred             HHHHHHHHHHHH
Q 038053          167 ISKLMGQMQESY  178 (231)
Q Consensus       167 i~~l~~~i~~~~  178 (231)
                      +++++..+.+..
T Consensus       146 v~~l~~~l~~~~  157 (161)
T cd04124         146 VVKLFQDAIKLA  157 (161)
T ss_pred             HHHHHHHHHHHH
Confidence            999988887643

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.33  E-value=3.8e-13  Score=105.08  Aligned_cols=87  Identities=22%  Similarity=0.190  Sum_probs=65.2

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee----EEeeCCcEEE
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT----TVLKDGQVVN   76 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~   76 (231)
                      ++..||..+++++++|++++|  .+++|+|+||||||||+++|+|...+.    .|.++.......    .........+
T Consensus         9 l~~~YG~~~~L~gvsl~v~~G--eiv~llG~NGaGKTTlLkti~Gl~~~~----~G~I~~~G~dit~~p~~~r~r~Gi~~   82 (237)
T COG0410           9 LSAGYGKIQALRGVSLEVERG--EIVALLGRNGAGKTTLLKTIMGLVRPR----SGRIIFDGEDITGLPPHERARLGIAY   82 (237)
T ss_pred             EeecccceeEEeeeeeEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCC----CeeEEECCeecCCCCHHHHHhCCeEe
Confidence            356899999999999999999  999999999999999999999998743    333332211100    0011345678


Q ss_pred             EEeCCCCcCCCCCchHH
Q 038053           77 VIDTPGLFDSSAGSEFV   93 (231)
Q Consensus        77 l~Dtpg~~~~~~~~~~~   93 (231)
                      +++.-.+|+..++.+++
T Consensus        83 VPegR~iF~~LTVeENL   99 (237)
T COG0410          83 VPEGRRIFPRLTVEENL   99 (237)
T ss_pred             CcccccchhhCcHHHHH
Confidence            99999999988776665

>cd04157 Arl6 Arl6 subfamily

Probab=99.33  E-value=4.1e-12  Score=95.91  Aligned_cols=135  Identities=10%  Similarity=0.070  Sum_probs=78.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhh
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLA  104 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~  104 (231)
                      +|+++|.+|||||||++.+++......   ....|.......... .+..+.++||||....           .......
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~---~~~~t~g~~~~~~~~-~~~~~~l~Dt~G~~~~-----------~~~~~~~   65 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQ---IIVPTVGFNVESFEK-GNLSFTAFDMSGQGKY-----------RGLWEHY   65 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcc---eecCccccceEEEEE-CCEEEEEEECCCCHhh-----------HHHHHHH
Confidence            489999999999999999998643211   111111111112222 5677889999996531           1111223


Q ss_pred             cCCccEEEEEEECCCCCCHHHHH-------h-----cCCCCcHHHHHHHHHhhH----HHHHhhc--------c-chhhh
Q 038053          105 KGGIHAVLVVFSVRSRFSQEEEA-------A-----NGGQPYTDEFLAELKRGA----TELRDQQ--------A-EVDSL  159 (231)
Q Consensus       105 ~~~~~~il~vvd~~~~~~~~~~~-------~-----~~~~~~~~~~~~~~~~~~----~~l~~~~--------~-~i~~i  159 (231)
                      +..+|++++|+|.++..+.....       .     ....|++ .++++.|...    ..+...+        + +++.+
T Consensus        66 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-iv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~  144 (162)
T cd04157          66 YKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPIL-FFANKMDLPDALTAVKITQLLGLENIKDKPWHIFAS  144 (162)
T ss_pred             HccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEE-EEEeCccccCCCCHHHHHHHhCCccccCceEEEEEe
Confidence            46789999999998543221100       0     1234443 4455544211    1222211        1 36779


Q ss_pred             hhhhHhhHHHHHHHHH
Q 038053          160 KEYSKQEISKLMGQMQ  175 (231)
Q Consensus       160 s~~~~~~i~~l~~~i~  175 (231)
                      ||++|.|++++++.+.
T Consensus       145 Sa~~g~gv~~~~~~l~  160 (162)
T cd04157         145 NALTGEGLDEGVQWLQ  160 (162)
T ss_pred             eCCCCCchHHHHHHHh
Confidence            9999999999988764

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd01861 Rab6 Rab6 subfamily

Probab=99.33  E-value=1e-11  Score=93.72  Aligned_cols=137  Identities=13%  Similarity=0.084  Sum_probs=80.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      +|+++|++|||||||+|.+++......  ..+..+.+........ .+  ..+.++||||...           +.....
T Consensus         2 ki~liG~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~l~~~D~~G~~~-----------~~~~~~   67 (161)
T cd01861           2 KLVFLGDQSVGKTSIITRFMYDTFDNQ--YQATIGIDFLSKTMYL-EDKTVRLQLWDTAGQER-----------FRSLIP   67 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcc--CCCceeeeEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHHHHH
Confidence            699999999999999999998865321  2333333333332333 23  3578999999432           111222


Q ss_pred             hhcCCccEEEEEEECCCCCCHHHHH-------hcC--CCCcHHHHHHHHHh-hH--------HHHHhhc-cchhhhhhhh
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEEEA-------ANG--GQPYTDEFLAELKR-GA--------TELRDQQ-AEVDSLKEYS  163 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~~~-------~~~--~~~~~~~~~~~~~~-~~--------~~l~~~~-~~i~~is~~~  163 (231)
                      ..+..+|++++|+|++++-+..+..       ...  ..|.+ .+.++.+. +.        ..+.... -+++.+|+.+
T Consensus        68 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ii-lv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  146 (161)
T cd01861          68 SYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIV-LVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKA  146 (161)
T ss_pred             HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEE-EEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCC
Confidence            3346789999999998542222211       111  23333 33344332 10        1111111 2567789999


Q ss_pred             HhhHHHHHHHHHH
Q 038053          164 KQEISKLMGQMQE  176 (231)
Q Consensus       164 ~~~i~~l~~~i~~  176 (231)
                      +.|+++++..+.+
T Consensus       147 ~~~v~~l~~~i~~  159 (161)
T cd01861         147 GHNVKELFRKIAS  159 (161)
T ss_pred             CCCHHHHHHHHHH
Confidence            9999999988765

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.33  E-value=1.4e-11  Score=98.60  Aligned_cols=94  Identities=23%  Similarity=0.233  Sum_probs=62.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           22 GKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        22 ~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+.+|.|+|.+|||||||+|+|++-..... ...+.++. ........+.+....+.||||+.++...    ..+....+
T Consensus        38 ~pvnvLi~G~TG~GKSSliNALF~~~~~~v-~~vg~~t~-~~~~~~~~~~~~~l~lwDtPG~gdg~~~----D~~~r~~~  111 (296)
T COG3596          38 EPVNVLLMGATGAGKSSLINALFQGEVKEV-SKVGVGTD-ITTRLRLSYDGENLVLWDTPGLGDGKDK----DAEHRQLY  111 (296)
T ss_pred             CceeEEEecCCCCcHHHHHHHHHhccCcee-eecccCCC-chhhHHhhccccceEEecCCCcccchhh----hHHHHHHH
Confidence            347888999999999999999995433221 11222222 2122222225678889999999985432    33455556


Q ss_pred             hhhcCCccEEEEEEECCCCC
Q 038053          102 GLAKGGIHAVLVVFSVRSRF  121 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~  121 (231)
                      ...+++.|.+++++++.++.
T Consensus       112 ~d~l~~~DLvL~l~~~~dra  131 (296)
T COG3596         112 RDYLPKLDLVLWLIKADDRA  131 (296)
T ss_pred             HHHhhhccEEEEeccCCCcc
Confidence            66678889999999997653

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.33  E-value=8.6e-13  Score=110.28  Aligned_cols=87  Identities=18%  Similarity=0.152  Sum_probs=64.8

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE--EeeCCcEEEEE
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT--VLKDGQVVNVI   78 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~l~   78 (231)
                      +++.|++..++++++|++++|  .+++|+|+||||||||+++|+|...+    +.|.+.........  .......++++
T Consensus        13 l~k~~~~~~~l~~vsl~i~~G--ei~gllGpNGaGKSTLl~~l~Gl~~p----~~G~v~i~G~~~~~~~~~~~~~ig~v~   86 (306)
T PRK13537         13 VEKRYGDKLVVDGLSFHVQRG--ECFGLLGPNGAGKTTTLRMLLGLTHP----DAGSISLCGEPVPSRARHARQRVGVVP   86 (306)
T ss_pred             EEEEECCeEEEecceEEEeCC--cEEEEECCCCCCHHHHHHHHhcCCCC----CceEEEECCEecccchHHHHhcEEEEe
Confidence            367888889999999999999  99999999999999999999999873    44433332211100  01135678999


Q ss_pred             eCCCCcCCCCCchHH
Q 038053           79 DTPGLFDSSAGSEFV   93 (231)
Q Consensus        79 Dtpg~~~~~~~~~~~   93 (231)
                      +.|++++..+..+.+
T Consensus        87 q~~~~~~~~tv~e~l  101 (306)
T PRK13537         87 QFDNLDPDFTVRENL  101 (306)
T ss_pred             ccCcCCCCCcHHHHH
Confidence            999998866655544

>cd04158 ARD1 ARD1 subfamily

Probab=99.32  E-value=7.8e-12  Score=95.53  Aligned_cols=135  Identities=14%  Similarity=0.051  Sum_probs=79.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhh
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLA  104 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~  104 (231)
                      +|+++|.+|||||||++.+++...    .. ...|.......... .+..+.++||||.....           ......
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~----~~-~~~T~~~~~~~~~~-~~~~i~l~Dt~G~~~~~-----------~~~~~~   63 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEF----MQ-PIPTIGFNVETVEY-KNLKFTIWDVGGKHKLR-----------PLWKHY   63 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCC----CC-cCCcCceeEEEEEE-CCEEEEEEECCCChhcc-----------hHHHHH
Confidence            488999999999999999998743    11 22333333333333 56788899999975311           112223


Q ss_pred             cCCccEEEEEEECCCCCCHHHHH------h----cCCCCcHHHHHHHHHhhH----HHHHhhc------c----chhhhh
Q 038053          105 KGGIHAVLVVFSVRSRFSQEEEA------A----NGGQPYTDEFLAELKRGA----TELRDQQ------A----EVDSLK  160 (231)
Q Consensus       105 ~~~~~~il~vvd~~~~~~~~~~~------~----~~~~~~~~~~~~~~~~~~----~~l~~~~------~----~i~~is  160 (231)
                      +..+|++++|+|+++.-+..+..      .    ....|++ .+.++.|...    +.+...+      .    .+..+|
T Consensus        64 ~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~pii-lv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  142 (169)
T cd04158          64 YLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLL-IFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCD  142 (169)
T ss_pred             hccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEE-EEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCc
Confidence            46789999999998532221111      1    1112332 3444443210    1222111      1    355679


Q ss_pred             hhhHhhHHHHHHHHHHH
Q 038053          161 EYSKQEISKLMGQMQES  177 (231)
Q Consensus       161 ~~~~~~i~~l~~~i~~~  177 (231)
                      |++|.|+.+++..+.+.
T Consensus       143 a~~g~gv~~~f~~l~~~  159 (169)
T cd04158         143 ARSGMGLYEGLDWLSRQ  159 (169)
T ss_pred             CCCCCCHHHHHHHHHHH
Confidence            99999999998877553

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd01889 SelB_euk SelB subfamily

Probab=99.32  E-value=2.1e-11  Score=95.20  Aligned_cols=140  Identities=11%  Similarity=0.153  Sum_probs=82.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCC------ccccccCCCCcceeeeeeeEEee-------------CCcEEEEEeCCCCcC
Q 038053           25 TVVLLGRTGNGKSATGNSILGRK------AFKASADSSGVTKTCEMKTTVLK-------------DGQVVNVIDTPGLFD   85 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~------~~~~~~~~~~~t~~~~~~~~~~~-------------~~~~~~l~Dtpg~~~   85 (231)
                      +|+++|++|+|||||++++++..      .... ....+.|.........+.             .+..+.++||||...
T Consensus         2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~-e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQ-SQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             eEEEEecCCCCHHHHHHHHHhccchhhhccCHH-HHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            69999999999999999999741      1000 112344444333322221             256789999999742


Q ss_pred             CCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhh--------HHHH---
Q 038053           86 SSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRG--------ATEL---  149 (231)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~--------~~~l---  149 (231)
                                 +...+......+|.+++|+|+.++.+..+..     .....+++ .+++++|..        .+.+   
T Consensus        81 -----------~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~i-iv~NK~Dl~~~~~~~~~~~~~~~~  148 (192)
T cd01889          81 -----------LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLI-VVLNKIDLIPEEERERKIEKMKKK  148 (192)
T ss_pred             -----------HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEE-EEEECcccCCHHHHHHHHHHHHHH
Confidence                       2222333346789999999998665544321     11233433 233333310        0111   


Q ss_pred             -Hhhc------c-chhhhhhhhHhhHHHHHHHHHHH
Q 038053          150 -RDQQ------A-EVDSLKEYSKQEISKLMGQMQES  177 (231)
Q Consensus       150 -~~~~------~-~i~~is~~~~~~i~~l~~~i~~~  177 (231)
                       ...+      . +++++|+++|.|+++|+..+...
T Consensus       149 l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~  184 (192)
T cd01889         149 LQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNL  184 (192)
T ss_pred             HHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhc
Confidence             1111      1 67889999999999998887653

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.32  E-value=2.3e-12  Score=95.48  Aligned_cols=127  Identities=15%  Similarity=0.270  Sum_probs=74.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhh
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLA  104 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~  104 (231)
                      +|+++|++|+|||||+|.+++....    ..+  |..     ..+ ..   .++||||.+..       .......+...
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~----~~~--t~~-----~~~-~~---~~iDt~G~~~~-------~~~~~~~~~~~   59 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL----YKK--TQA-----VEY-ND---GAIDTPGEYVE-------NRRLYSALIVT   59 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc----ccc--cee-----EEE-cC---eeecCchhhhh-------hHHHHHHHHHH
Confidence            6999999999999999999988641    111  211     111 12   47999997421       11122222234


Q ss_pred             cCCccEEEEEEECCCCCCHHHHH--hcCCCCcHHHHHHHHHhhH--------HHHHhhc--cchhhhhhhhHhhHHHHHH
Q 038053          105 KGGIHAVLVVFSVRSRFSQEEEA--ANGGQPYTDEFLAELKRGA--------TELRDQQ--AEVDSLKEYSKQEISKLMG  172 (231)
Q Consensus       105 ~~~~~~il~vvd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--------~~l~~~~--~~i~~is~~~~~~i~~l~~  172 (231)
                      +..+|++++|+|+++..+..+..  .....|.+ .++++.|...        ..+....  .+++.+|+++|.|+++++.
T Consensus        60 ~~~ad~vilv~d~~~~~s~~~~~~~~~~~~p~i-lv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  138 (142)
T TIGR02528        60 AADADVIALVQSATDPESRFPPGFASIFVKPVI-GLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQGLEALVD  138 (142)
T ss_pred             hhcCCEEEEEecCCCCCcCCChhHHHhccCCeE-EEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence            68899999999997554432221  11122333 2334444210        1111111  2567789999999999887


Q ss_pred             HH
Q 038053          173 QM  174 (231)
Q Consensus       173 ~i  174 (231)
                      .+
T Consensus       139 ~l  140 (142)
T TIGR02528       139 YL  140 (142)
T ss_pred             HH
Confidence            65

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.31  E-value=9e-13  Score=106.17  Aligned_cols=85  Identities=21%  Similarity=0.175  Sum_probs=60.9

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eE-----EeeCCcEE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TT-----VLKDGQVV   75 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~-----~~~~~~~~   75 (231)
                      ++.|++..++++++|++.+|  .+++|+|+||||||||+++|+|...+    ..|.++...... ..     ........
T Consensus         7 ~~~~~~~~~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~p----~~G~i~~~g~~~~~~~~~~~~~~~~~i~   80 (235)
T cd03261           7 TKSFGGRTVLKGVDLDVRRG--EILAIIGPSGSGKSTLLRLIVGLLRP----DSGEVLIDGEDISGLSEAELYRLRRRMG   80 (235)
T ss_pred             EEEECCEEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CceEEEECCEEccccChhhHHHHhcceE
Confidence            56788888999999999999  99999999999999999999999873    344333322110 00     00123467


Q ss_pred             EEEeCCCCcCCCCCchH
Q 038053           76 NVIDTPGLFDSSAGSEF   92 (231)
Q Consensus        76 ~l~Dtpg~~~~~~~~~~   92 (231)
                      ++++.|.+++..+..++
T Consensus        81 ~v~q~~~~~~~~tv~~~   97 (235)
T cd03261          81 MLFQSGALFDSLTVFEN   97 (235)
T ss_pred             EEccCcccCCCCcHHHH
Confidence            88888888775554443

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.31  E-value=1.4e-11  Score=95.39  Aligned_cols=140  Identities=14%  Similarity=0.116  Sum_probs=78.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEe--eCCcEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVL--KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+++|.+|||||||++.+++...... ....+.+.  .......  ..+..+.+.||||...           +....
T Consensus         4 ~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~--~~~~~~~~~~~~~~l~l~Dt~G~~~-----------~~~~~   69 (183)
T cd04152           4 LHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNT--EKIKVSLGNSKGITFHFWDVGGQEK-----------LRPLW   69 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccce--eEEEeeccCCCceEEEEEECCCcHh-----------HHHHH
Confidence            6899999999999999999987653211 11111111  1111111  1345688999999532           11112


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH----------hcCCCCcHHHHHHHHHhhH----HHHHhh------c----cchh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA----------ANGGQPYTDEFLAELKRGA----TELRDQ------Q----AEVD  157 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~----~~l~~~------~----~~i~  157 (231)
                      ...+..+|++++|+|+++.-+..+..          .....|++ .++++.|...    ..+...      .    .++.
T Consensus        70 ~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~i-iv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (183)
T cd04152          70 KSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVL-VLANKQDLPNALSVSEVEKLLALHELSASTPWHVQ  148 (183)
T ss_pred             HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEE-EEEECcCccccCCHHHHHHHhCccccCCCCceEEE
Confidence            23356789999999998431111110          11223443 3444443210    122211      1    1366


Q ss_pred             hhhhhhHhhHHHHHHHHHHHH
Q 038053          158 SLKEYSKQEISKLMGQMQESY  178 (231)
Q Consensus       158 ~is~~~~~~i~~l~~~i~~~~  178 (231)
                      ++||.++.|+++++..+....
T Consensus       149 ~~SA~~~~gi~~l~~~l~~~l  169 (183)
T cd04152         149 PACAIIGEGLQEGLEKLYEMI  169 (183)
T ss_pred             EeecccCCCHHHHHHHHHHHH
Confidence            799999999999988876543

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.31  E-value=1.3e-12  Score=104.50  Aligned_cols=74  Identities=20%  Similarity=0.192  Sum_probs=53.4

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCC
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTP   81 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtp   81 (231)
                      +..|+..++++|++|++++|  ..++|+||||||||||+++|+|...    +..|.+..............+..|++|-.
T Consensus        11 ~v~y~~~~vl~~i~l~v~~G--~~~~iiGPNGaGKSTLlK~iLGll~----p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~   84 (254)
T COG1121          11 TVSYGNRPVLEDISLSVEKG--EITALIGPNGAGKSTLLKAILGLLK----PSSGEIKIFGKPVRKRRKRLRIGYVPQKS   84 (254)
T ss_pred             EEEECCEeeeeccEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCc----CCcceEEEccccccccccCCeEEEcCccc
Confidence            45778557999999999999  9999999999999999999999877    34444443322111111124567777744

>cd01890 LepA LepA subfamily

Probab=99.31  E-value=3.9e-12  Score=97.80  Aligned_cols=141  Identities=15%  Similarity=0.222  Sum_probs=81.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccc------c-cC------CCCcceeeeeeeEEe----eCCcEEEEEeCCCCcCCC
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKA------S-AD------SSGVTKTCEMKTTVL----KDGQVVNVIDTPGLFDSS   87 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~------~-~~------~~~~t~~~~~~~~~~----~~~~~~~l~Dtpg~~~~~   87 (231)
                      +|+++|.+|+|||||++.+++......      . ..      ..++|.........+    .....+.++||||.... 
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-   80 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF-   80 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh-
Confidence            699999999999999999987532110      0 00      112332222111111    13456779999998652 


Q ss_pred             CCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhh---H----HHHHhhcc-
Q 038053           88 AGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRG---A----TELRDQQA-  154 (231)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~---~----~~l~~~~~-  154 (231)
                            ...    ....+..+|++++|+|++++.+..+..     .....+++ .+++++|..   .    ..+.+.++ 
T Consensus        81 ------~~~----~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~ii-iv~NK~Dl~~~~~~~~~~~~~~~~~~  149 (179)
T cd01890          81 ------SYE----VSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEII-PVINKIDLPSADPERVKQQIEDVLGL  149 (179)
T ss_pred             ------HHH----HHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEE-EEEECCCCCcCCHHHHHHHHHHHhCC
Confidence                  111    222345689999999998665544332     12233333 344444421   0    13333222 


Q ss_pred             ---chhhhhhhhHhhHHHHHHHHHHH
Q 038053          155 ---EVDSLKEYSKQEISKLMGQMQES  177 (231)
Q Consensus       155 ---~i~~is~~~~~~i~~l~~~i~~~  177 (231)
                         .++.+|+++|.|+++++..+...
T Consensus       150 ~~~~~~~~Sa~~g~gi~~l~~~l~~~  175 (179)
T cd01890         150 DPSEAILVSAKTGLGVEDLLEAIVER  175 (179)
T ss_pred             CcccEEEeeccCCCCHHHHHHHHHhh
Confidence               36789999999999998887653

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.30  E-value=2e-12  Score=103.09  Aligned_cols=83  Identities=22%  Similarity=0.079  Sum_probs=60.2

Q ss_pred             CCCCCC----cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEE
Q 038053            2 SSGMGE----RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNV   77 (231)
Q Consensus         2 ~~~~~~----~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l   77 (231)
                      ++.|++    ++++++++|++++|  .+++|+|+||||||||+++|+|...+    ..|.++....... .. .....++
T Consensus         7 ~~~~~~~~~~~~il~~vs~~i~~G--~~~~i~G~nGsGKSTLl~~l~Gl~~~----~~G~i~~~g~~~~-~~-~~~i~~v   78 (220)
T cd03293           7 SKTYGGGGGAVTALEDISLSVEEG--EFVALVGPSGCGKSTLLRIIAGLERP----TSGEVLVDGEPVT-GP-GPDRGYV   78 (220)
T ss_pred             EEEcCCCCcceEEEeceeEEEeCC--cEEEEECCCCCCHHHHHHHHhCCCCC----CceEEEECCEECc-cc-cCcEEEE
Confidence            556776    68999999999999  99999999999999999999999763    3443333221110 11 3456788


Q ss_pred             EeCCCCcCCCCCchH
Q 038053           78 IDTPGLFDSSAGSEF   92 (231)
Q Consensus        78 ~Dtpg~~~~~~~~~~   92 (231)
                      ++.|.+++..+..++
T Consensus        79 ~q~~~~~~~~tv~e~   93 (220)
T cd03293          79 FQQDALLPWLTVLDN   93 (220)
T ss_pred             ecccccccCCCHHHH
Confidence            898888775554433

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.30  E-value=9.4e-13  Score=104.24  Aligned_cols=83  Identities=20%  Similarity=0.179  Sum_probs=59.6

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCC
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTP   81 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtp   81 (231)
                      ++.|+++.++++++|++.+|  .+++|+|+||||||||+++|+|...+    ..|.++.......... .....++++.|
T Consensus         7 ~~~~~~~~~l~~v~~~i~~G--~~~~i~G~nGsGKSTLl~~l~G~~~~----~~G~i~~~g~~~~~~~-~~~i~~~~q~~   79 (210)
T cd03269           7 TKRFGRVTALDDISFSVEKG--EIFGLLGPNGAGKTTTIRMILGIILP----DSGEVLFDGKPLDIAA-RNRIGYLPEER   79 (210)
T ss_pred             EEEECCEEEEeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCC----CceEEEECCCchhHHH-HccEEEeccCC
Confidence            56677788999999999999  99999999999999999999999763    3333332211100011 34567788888


Q ss_pred             CCcCCCCCch
Q 038053           82 GLFDSSAGSE   91 (231)
Q Consensus        82 g~~~~~~~~~   91 (231)
                      .+++..+..+
T Consensus        80 ~~~~~~tv~e   89 (210)
T cd03269          80 GLYPKMKVID   89 (210)
T ss_pred             cCCcCCcHHH
Confidence            8877554433

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.30  E-value=9.7e-12  Score=95.50  Aligned_cols=134  Identities=10%  Similarity=0.073  Sum_probs=79.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+++|++|+|||||++.+++......     ..|.......... .+..+.++||||...           +......
T Consensus        16 ~kv~~~G~~~~GKTsl~~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~l~D~~G~~~-----------~~~~~~~   78 (174)
T cd04153          16 YKVIIVGLDNAGKTTILYQFLLGEVVHT-----SPTIGSNVEEIVY-KNIRFLMWDIGGQES-----------LRSSWNT   78 (174)
T ss_pred             cEEEEECCCCCCHHHHHHHHccCCCCCc-----CCccccceEEEEE-CCeEEEEEECCCCHH-----------HHHHHHH
Confidence            7899999999999999999987543211     1122222222333 567789999999753           1111223


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH------hc----CCCCcHHHHHHHHHhh----HHHHHhhcc---------chhhhh
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA------AN----GGQPYTDEFLAELKRG----ATELRDQQA---------EVDSLK  160 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~----~~~l~~~~~---------~i~~is  160 (231)
                      .+..+|++++|+|.++.-+.....      ..    ...|++ .++++.|..    ..++...+.         ++..+|
T Consensus        79 ~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~v-iv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~S  157 (174)
T cd04153          79 YYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLL-VLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCC  157 (174)
T ss_pred             HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEE-EEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecc
Confidence            346789999999998542211111      11    123332 344444321    012222211         467799


Q ss_pred             hhhHhhHHHHHHHHH
Q 038053          161 EYSKQEISKLMGQMQ  175 (231)
Q Consensus       161 ~~~~~~i~~l~~~i~  175 (231)
                      |.+|.|+++++..+.
T Consensus       158 A~~g~gi~e~~~~l~  172 (174)
T cd04153         158 ALTGEGLPEGLDWIA  172 (174)
T ss_pred             cCCCCCHHHHHHHHh
Confidence            999999999887764

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.30  E-value=2.2e-12  Score=101.81  Aligned_cols=81  Identities=20%  Similarity=0.090  Sum_probs=61.5

Q ss_pred             cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-------eEEeeCCcEEEEEeC
Q 038053            8 RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-------TTVLKDGQVVNVIDT   80 (231)
Q Consensus         8 ~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-------~~~~~~~~~~~l~Dt   80 (231)
                      ..+|++++|.+++|  ..++|+||+|||||||+|.|.|.+.+    +.|.+.......       .........++++|.
T Consensus        18 ~~~L~~v~l~i~~G--e~vaI~GpSGSGKSTLLniig~ld~p----t~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~   91 (226)
T COG1136          18 VEALKDVNLEIEAG--EFVAIVGPSGSGKSTLLNLLGGLDKP----TSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQN   91 (226)
T ss_pred             eEecccceEEEcCC--CEEEEECCCCCCHHHHHHHHhcccCC----CCceEEECCEEcCcCCHHHHHHHHHHhEEEECcc
Confidence            47899999999999  99999999999999999999999984    333323222111       011224568999999


Q ss_pred             CCCcCCCCCchHHH
Q 038053           81 PGLFDSSAGSEFVG   94 (231)
Q Consensus        81 pg~~~~~~~~~~~~   94 (231)
                      .++.+..++.+++.
T Consensus        92 ~nLl~~ltv~ENv~  105 (226)
T COG1136          92 FNLLPDLTVLENVE  105 (226)
T ss_pred             CCCCCCCCHHHHHH
Confidence            99999888777654

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.30  E-value=2.2e-12  Score=103.01  Aligned_cols=85  Identities=22%  Similarity=0.223  Sum_probs=61.3

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE-E---eeCCcEEE
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT-V---LKDGQVVN   76 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~-~---~~~~~~~~   76 (231)
                      +++.|++.+++++++|++.+|  .+++|+|+||||||||+++|+|...    +..|.++.+...... .   .......+
T Consensus         6 l~~~~~~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~----~~~G~i~~~g~~~~~~~~~~~~~~~i~~   79 (222)
T cd03224           6 LNAGYGKSQILFGVSLTVPEG--EIVALLGRNGAGKTTLLKTIMGLLP----PRSGSIRFDGRDITGLPPHERARAGIGY   79 (222)
T ss_pred             EEeecCCeeEeeeeeEEEcCC--eEEEEECCCCCCHHHHHHHHhCCCC----CCCceEEECCEEcCCCCHHHHHhcCeEE
Confidence            356788888999999999999  9999999999999999999999987    344444433221100 0   00234678


Q ss_pred             EEeCCCCcCCCCCch
Q 038053           77 VIDTPGLFDSSAGSE   91 (231)
Q Consensus        77 l~Dtpg~~~~~~~~~   91 (231)
                      +++.|.+++..+..+
T Consensus        80 ~~q~~~~~~~~t~~~   94 (222)
T cd03224          80 VPEGRRIFPELTVEE   94 (222)
T ss_pred             eccccccCCCCcHHH
Confidence            888888877544433

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.30  E-value=8.2e-12  Score=94.20  Aligned_cols=134  Identities=14%  Similarity=0.128  Sum_probs=77.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhh
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLA  104 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~  104 (231)
                      +|+++|++|||||||+|.+++.......+     |...............+.+.||||...           +.......
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~-----t~~~~~~~~~~~~~~~l~i~D~~G~~~-----------~~~~~~~~   64 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTTIP-----TVGFNVEMLQLEKHLSLTVWDVGGQEK-----------MRTVWKCY   64 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccccC-----ccCcceEEEEeCCceEEEEEECCCCHh-----------HHHHHHHH
Confidence            48999999999999999999886532211     111112222222345788999999653           11112223


Q ss_pred             cCCccEEEEEEECCCCCCHHHHH------hc----CCCCcHHHHHHHHHhh----HHHHHhhc------c----chhhhh
Q 038053          105 KGGIHAVLVVFSVRSRFSQEEEA------AN----GGQPYTDEFLAELKRG----ATELRDQQ------A----EVDSLK  160 (231)
Q Consensus       105 ~~~~~~il~vvd~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~----~~~l~~~~------~----~i~~is  160 (231)
                      +..+|++++|+|.++..+.....      ..    ...|++ .++++.|..    ..++...+      .    +++.+|
T Consensus        65 ~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~S  143 (160)
T cd04156          65 LENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVV-LLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCS  143 (160)
T ss_pred             hccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEE-EEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecc
Confidence            46789999999998543222211      01    223333 344444421    11222111      1    466789


Q ss_pred             hhhHhhHHHHHHHHH
Q 038053          161 EYSKQEISKLMGQMQ  175 (231)
Q Consensus       161 ~~~~~~i~~l~~~i~  175 (231)
                      |++|+|+++++..+.
T Consensus       144 a~~~~gv~~~~~~i~  158 (160)
T cd04156         144 AVTGEGLAEAFRKLA  158 (160)
T ss_pred             cccCCChHHHHHHHh
Confidence            999999999988764

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.30  E-value=2e-12  Score=103.00  Aligned_cols=84  Identities=18%  Similarity=0.114  Sum_probs=59.7

Q ss_pred             CCCCCC----cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-EE------ee
Q 038053            2 SSGMGE----RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-TV------LK   70 (231)
Q Consensus         2 ~~~~~~----~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-~~------~~   70 (231)
                      ++.|++    +.++++++|++++|  .+++|+|+||||||||+++|+|...+    ..|.+........ ..      ..
T Consensus         7 ~~~~~~~~~~~~il~~~s~~i~~G--~~~~l~G~nGsGKSTLl~~i~Gl~~~----~~G~i~~~g~~~~~~~~~~~~~~~   80 (218)
T cd03255           7 SKTYGGGGEKVQALKGVSLSIEKG--EFVAIVGPSGSGKSTLLNILGGLDRP----TSGEVRVDGTDISKLSEKELAAFR   80 (218)
T ss_pred             EEEecCCCcceeEEeeeEEEEcCC--CEEEEEcCCCCCHHHHHHHHhCCcCC----CceeEEECCEehhhcchhHHHHHH
Confidence            556765    68999999999999  99999999999999999999999873    3443333221110 00      00


Q ss_pred             CCcEEEEEeCCCCcCCCCCch
Q 038053           71 DGQVVNVIDTPGLFDSSAGSE   91 (231)
Q Consensus        71 ~~~~~~l~Dtpg~~~~~~~~~   91 (231)
                      .....++++.|.+++..+..+
T Consensus        81 ~~~i~~~~q~~~~~~~~tv~e  101 (218)
T cd03255          81 RRHIGFVFQSFNLLPDLTALE  101 (218)
T ss_pred             hhcEEEEeeccccCCCCcHHH
Confidence            235678889888887554433

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.30  E-value=2e-12  Score=102.58  Aligned_cols=86  Identities=21%  Similarity=0.146  Sum_probs=60.7

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEEeeCCcEEEEEe
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTVLKDGQVVNVID   79 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~D   79 (231)
                      +++.|++++++++++|++++|  .+++|+|+||||||||+++|+|...+    ..|.++...... ..........++++
T Consensus         6 l~~~~~~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~p----~~G~i~~~g~~~~~~~~~~~~i~~v~q   79 (213)
T cd03259           6 LSKTYGSVRALDDLSLTVEPG--EFLALLGPSGCGKTTLLRLIAGLERP----DSGEILIDGRDVTGVPPERRNIGMVFQ   79 (213)
T ss_pred             eEEEeCCeeeecceeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCC----CCeEEEECCEEcCcCchhhccEEEEcC
Confidence            356788888999999999999  99999999999999999999999873    344333322110 00001235677888


Q ss_pred             CCCCcCCCCCchH
Q 038053           80 TPGLFDSSAGSEF   92 (231)
Q Consensus        80 tpg~~~~~~~~~~   92 (231)
                      .|.+++..+..++
T Consensus        80 ~~~~~~~~tv~~~   92 (213)
T cd03259          80 DYALFPHLTVAEN   92 (213)
T ss_pred             chhhccCCcHHHH
Confidence            8887765544333

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.30  E-value=1.8e-11  Score=92.21  Aligned_cols=137  Identities=18%  Similarity=0.212  Sum_probs=77.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+++|.+|||||||+|.+++.....   ...+++.......... .+  ..+.++||||....        ..+.   
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~---~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~--------~~l~---   66 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHFVD---EYDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEY--------SAMR---   66 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCcC---CcCCcchheEEEEEEE-CCEEEEEEEEECCCCcch--------HHHH---
Confidence            579999999999999999999865311   1111111111111222 33  23567999996431        1121   


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH--------h--cCCCCcHHHHHHHHHhhH--------HHHHhhcc-chhhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------A--NGGQPYTDEFLAELKRGA--------TELRDQQA-EVDSLKEY  162 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~--~~~~~~~~~~~~~~~~~~--------~~l~~~~~-~i~~is~~  162 (231)
                      ...+..++++++++++++.-+..+..        .  ....|++ .+.++.|...        ..+....+ +++.+|++
T Consensus        67 ~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~pii-vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~  145 (162)
T cd04138          67 DQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMV-LVGNKCDLAARTVSSRQGQDLAKSYGIPYIETSAK  145 (162)
T ss_pred             HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECcccccceecHHHHHHHHHHhCCeEEEecCC
Confidence            22335679999999988432222211        1  1233443 3344433210        12222222 67789999


Q ss_pred             hHhhHHHHHHHHHH
Q 038053          163 SKQEISKLMGQMQE  176 (231)
Q Consensus       163 ~~~~i~~l~~~i~~  176 (231)
                      +|.|+++++..+.+
T Consensus       146 ~~~gi~~l~~~l~~  159 (162)
T cd04138         146 TRQGVEEAFYTLVR  159 (162)
T ss_pred             CCCCHHHHHHHHHH
Confidence            99999998887754

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.29  E-value=1.7e-11  Score=92.68  Aligned_cols=138  Identities=20%  Similarity=0.186  Sum_probs=78.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+++|++|+|||||+|.+++.....   ...+++.......... .+  ..+.++||||.....        .+   .
T Consensus         3 ~ki~i~G~~~~GKtsl~~~~~~~~~~~---~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~--------~~---~   67 (164)
T cd04145           3 YKLVVVGGGGVGKSALTIQFIQSYFVT---DYDPTIEDSYTKQCEI-DGQWAILDILDTAGQEEFS--------AM---R   67 (164)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCc---ccCCCccceEEEEEEE-CCEEEEEEEEECCCCcchh--------HH---H
Confidence            689999999999999999998865311   1112222111112222 33  356789999965421        11   1


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH----------hcCCCCcHHHHHHHHHhhH---------HHHHhhcc-chhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA----------ANGGQPYTDEFLAELKRGA---------TELRDQQA-EVDSLKE  161 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~---------~~l~~~~~-~i~~is~  161 (231)
                      ...+..+|++++|+|+++.-+.....          .....|++ .+.++.|...         ..+....+ +++.+|+
T Consensus        68 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-iv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  146 (164)
T cd04145          68 EQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMI-LVGNKADLEHQRKVSREEGQELARKLKIPYIETSA  146 (164)
T ss_pred             HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEE-EEeeCccccccceecHHHHHHHHHHcCCcEEEeeC
Confidence            22335679999999998533222211          11233433 3344443110         11211122 6778999


Q ss_pred             hhHhhHHHHHHHHHHH
Q 038053          162 YSKQEISKLMGQMQES  177 (231)
Q Consensus       162 ~~~~~i~~l~~~i~~~  177 (231)
                      .+|.|+.++++.+...
T Consensus       147 ~~~~~i~~l~~~l~~~  162 (164)
T cd04145         147 KDRLNVDKAFHDLVRV  162 (164)
T ss_pred             CCCCCHHHHHHHHHHh
Confidence            9999999998877653

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.29  E-value=1.5e-12  Score=102.24  Aligned_cols=92  Identities=21%  Similarity=0.180  Sum_probs=69.5

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeee----ee--EEeeCCcE
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEM----KT--TVLKDGQV   74 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~----~~--~~~~~~~~   74 (231)
                      +++.||++.++++++|.+++|  ...+++|++|+|||||+++|.|...+..|    .+-.....    ..  ......+.
T Consensus        14 v~~~fG~~~Ild~v~l~V~~G--ei~~iiGgSGsGKStlLr~I~Gll~P~~G----eI~i~G~~i~~ls~~~~~~ir~r~   87 (263)
T COG1127          14 VTKSFGDRVILDGVDLDVPRG--EILAILGGSGSGKSTLLRLILGLLRPDKG----EILIDGEDIPQLSEEELYEIRKRM   87 (263)
T ss_pred             eeeecCCEEEecCceeeecCC--cEEEEECCCCcCHHHHHHHHhccCCCCCC----eEEEcCcchhccCHHHHHHHHhhe
Confidence            478999999999999999999  99999999999999999999999985443    32222111    00  00014567


Q ss_pred             EEEEeCCCCcCCCCCchHHHHHHH
Q 038053           75 VNVIDTPGLFDSSAGSEFVGKEIV   98 (231)
Q Consensus        75 ~~l~Dtpg~~~~~~~~~~~~~~~~   98 (231)
                      ++++|...+|+..++.+++...+.
T Consensus        88 GvlFQ~gALFssltV~eNVafplr  111 (263)
T COG1127          88 GVLFQQGALFSSLTVFENVAFPLR  111 (263)
T ss_pred             eEEeeccccccccchhHhhheehH
Confidence            889999999988888777655433

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.29  E-value=2.8e-12  Score=101.87  Aligned_cols=82  Identities=15%  Similarity=0.145  Sum_probs=58.8

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCC
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTP   81 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtp   81 (231)
                      ++.|+++.++++++|++.+|  .+++|+|+||+|||||+++|+|...+    ..|.++................++.+.|
T Consensus        18 ~~~~~~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~----~~G~i~~~g~~i~~~~~~~~i~~~~q~~   91 (214)
T PRK13543         18 AFSRNEEPVFGPLDFHVDAG--EALLVQGDNGAGKTTLLRVLAGLLHV----ESGQIQIDGKTATRGDRSRFMAYLGHLP   91 (214)
T ss_pred             EEecCCceeeecceEEECCC--CEEEEEcCCCCCHHHHHHHHhCCCCC----CCeeEEECCEEccchhhhhceEEeecCc
Confidence            56788888999999999999  99999999999999999999999873    4444433321110001123356788888


Q ss_pred             CCcCCCCC
Q 038053           82 GLFDSSAG   89 (231)
Q Consensus        82 g~~~~~~~   89 (231)
                      .+++..+.
T Consensus        92 ~~~~~~t~   99 (214)
T PRK13543         92 GLKADLST   99 (214)
T ss_pred             ccccCCcH
Confidence            87765443

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.29  E-value=4.4e-12  Score=96.76  Aligned_cols=85  Identities=20%  Similarity=0.103  Sum_probs=66.0

Q ss_pred             CCCCCCcc--cCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEe
Q 038053            2 SSGMGERV--IDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVID   79 (231)
Q Consensus         2 ~~~~~~~~--~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~D   79 (231)
                      +-.|.+++  +++++|+++.+|  ..++++|++|||||||+|.+.|-..    ++.|.++.....  .+-+......+++
T Consensus        10 sl~y~g~~~~~le~vsL~ia~g--e~vv~lGpSGcGKTTLLnl~AGf~~----P~~G~i~l~~r~--i~gPgaergvVFQ   81 (259)
T COG4525          10 SLSYEGKPRSALEDVSLTIASG--ELVVVLGPSGCGKTTLLNLIAGFVT----PSRGSIQLNGRR--IEGPGAERGVVFQ   81 (259)
T ss_pred             EEecCCcchhhhhccceeecCC--CEEEEEcCCCccHHHHHHHHhcCcC----cccceEEECCEe--ccCCCccceeEec
Confidence            44677777  999999999999  9999999999999999999999988    455555543221  1112456788999


Q ss_pred             CCCCcCCCCCchHHH
Q 038053           80 TPGLFDSSAGSEFVG   94 (231)
Q Consensus        80 tpg~~~~~~~~~~~~   94 (231)
                      .+++.++.+..+++.
T Consensus        82 ~~~LlPWl~~~dNva   96 (259)
T COG4525          82 NEALLPWLNVIDNVA   96 (259)
T ss_pred             cCccchhhHHHHHHH
Confidence            999999887665543

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.29  E-value=8.4e-12  Score=97.66  Aligned_cols=85  Identities=15%  Similarity=0.092  Sum_probs=59.5

Q ss_pred             CCCCCC------cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCC--ccccccCCCCcceeeeeeeEEeeCCc
Q 038053            2 SSGMGE------RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRK--AFKASADSSGVTKTCEMKTTVLKDGQ   73 (231)
Q Consensus         2 ~~~~~~------~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~--~~~~~~~~~~~t~~~~~~~~~~~~~~   73 (231)
                      +++|+.      .++++++++++.+|  .+++|+|+||+|||||+++|+|..  .    +..|.+..+............
T Consensus        10 s~~~~~~~~~~~~~~l~~~~~~i~~G--e~~~l~G~nGsGKStLl~~i~Gl~~~~----~~~G~i~~~g~~~~~~~~~~~   83 (194)
T cd03213          10 TVTVKSSPSKSGKQLLKNVSGKAKPG--ELTAIMGPSGAGKSTLLNALAGRRTGL----GVSGEVLINGRPLDKRSFRKI   83 (194)
T ss_pred             EEEEecCCCcccccceecceEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCC----CCceEEEECCEeCchHhhhhe
Confidence            455654      67999999999999  999999999999999999999997  6    334433332211100011345


Q ss_pred             EEEEEeCCCCcCCCCCchH
Q 038053           74 VVNVIDTPGLFDSSAGSEF   92 (231)
Q Consensus        74 ~~~l~Dtpg~~~~~~~~~~   92 (231)
                      ..++++.|.+++..+..++
T Consensus        84 i~~~~q~~~~~~~~t~~~~  102 (194)
T cd03213          84 IGYVPQDDILHPTLTVRET  102 (194)
T ss_pred             EEEccCcccCCCCCcHHHH
Confidence            6778888887775555443

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.29  E-value=1.4e-11  Score=93.08  Aligned_cols=138  Identities=15%  Similarity=0.149  Sum_probs=80.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      +|+++|++|||||||++.+++......  ..+..+.......... .+  ..+.++|+||...           +.....
T Consensus         2 kv~v~G~~~~GKTtli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~-----------~~~~~~   67 (164)
T smart00175        2 KIILIGDSGVGKSSLLSRFTDGKFSEQ--YKSTIGVDFKTKTIEV-DGKRVKLQIWDTAGQER-----------FRSITS   67 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCC--CCCceeeEEEEEEEEE-CCEEEEEEEEECCChHH-----------HHHHHH
Confidence            799999999999999999998764211  1222222222222222 33  3567999999532           111222


Q ss_pred             hhcCCccEEEEEEECCCCCCHHHHH--------hc-CCCCcHHHHHHHHHhhH---------HHHHhhcc-chhhhhhhh
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEEEA--------AN-GGQPYTDEFLAELKRGA---------TELRDQQA-EVDSLKEYS  163 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~~---------~~l~~~~~-~i~~is~~~  163 (231)
                      ..+..+|++++++|+++..+..+..        .. ...|++ .+.++.+...         ..+....+ +++.+|+.+
T Consensus        68 ~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~piv-vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~  146 (164)
T smart00175       68 SYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIM-LVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKT  146 (164)
T ss_pred             HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEE-EEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCC
Confidence            3346789999999998544433321        11 223333 3334433110         12222222 677789999


Q ss_pred             HhhHHHHHHHHHHH
Q 038053          164 KQEISKLMGQMQES  177 (231)
Q Consensus       164 ~~~i~~l~~~i~~~  177 (231)
                      +.|+++++..+.+.
T Consensus       147 ~~~i~~l~~~i~~~  160 (164)
T smart00175      147 NTNVEEAFEELARE  160 (164)
T ss_pred             CCCHHHHHHHHHHH
Confidence            99999998888764

Rab GTPases are implicated in vesicle trafficking.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.29  E-value=2.5e-12  Score=107.47  Aligned_cols=87  Identities=24%  Similarity=0.204  Sum_probs=62.6

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee--EEeeCCcEEEEE
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT--TVLKDGQVVNVI   78 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~l~   78 (231)
                      +++.|++..++++++|++++|  .+++|+|+||||||||+++|+|...+    ..|.+........  .........+++
T Consensus        10 l~~~~~~~~~l~~vsl~i~~G--e~~~l~G~NGaGKSTLl~~l~Gl~~p----~~G~i~~~g~~~~~~~~~~~~~i~~v~   83 (303)
T TIGR01288        10 VSKSYGDKVVVNDLSFTIARG--ECFGLLGPNGAGKSTIARMLLGMISP----DRGKITVLGEPVPSRARLARVAIGVVP   83 (303)
T ss_pred             EEEEeCCeEEEcceeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCC----CceEEEECCEECcccHHHHhhcEEEEe
Confidence            357788888999999999999  99999999999999999999999873    3343332221100  000134577889


Q ss_pred             eCCCCcCCCCCchHH
Q 038053           79 DTPGLFDSSAGSEFV   93 (231)
Q Consensus        79 Dtpg~~~~~~~~~~~   93 (231)
                      +.|.+++..+..+.+
T Consensus        84 q~~~~~~~~tv~e~l   98 (303)
T TIGR01288        84 QFDNLDPEFTVRENL   98 (303)
T ss_pred             ccccCCcCCcHHHHH
Confidence            988888765554443

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.28  E-value=3.3e-12  Score=104.11  Aligned_cols=83  Identities=20%  Similarity=0.178  Sum_probs=59.8

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCC
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTP   81 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtp   81 (231)
                      ++.|++..++++++|++++|  .+++|+|+||||||||+++|+|...+    ..|.++....... .. .....++++.|
T Consensus         8 ~~~~~~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p----~~G~i~~~g~~~~-~~-~~~~~~v~q~~   79 (255)
T PRK11248          8 YADYGGKPALEDINLTLESG--ELLVVLGPSGCGKTTLLNLIAGFVPY----QHGSITLDGKPVE-GP-GAERGVVFQNE   79 (255)
T ss_pred             EEEeCCeeeEeeeeEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CCcEEEECCEECC-CC-CCcEEEEeCCC
Confidence            56787788999999999999  99999999999999999999999873    3443333221100 01 23457788888


Q ss_pred             CCcCCCCCchH
Q 038053           82 GLFDSSAGSEF   92 (231)
Q Consensus        82 g~~~~~~~~~~   92 (231)
                      .+++..+..++
T Consensus        80 ~~~~~~tv~e~   90 (255)
T PRK11248         80 GLLPWRNVQDN   90 (255)
T ss_pred             ccCCCCcHHHH
Confidence            87765554443

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.28  E-value=2.2e-12  Score=102.84  Aligned_cols=82  Identities=16%  Similarity=0.040  Sum_probs=58.7

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee---EEeeCCcEEEEE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT---TVLKDGQVVNVI   78 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~l~   78 (231)
                      ++.|+++.++++++|++.+|  .+++|+|+||||||||+++|+|...+    ..|.++.......   ... .....+++
T Consensus         7 ~~~~~~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~----~~G~i~~~g~~~~~~~~~~-~~~i~~~~   79 (220)
T cd03265           7 VKKYGDFEAVRGVSFRVRRG--EIFGLLGPNGAGKTTTIKMLTTLLKP----TSGRATVAGHDVVREPREV-RRRIGIVF   79 (220)
T ss_pred             EEEECCEEeeeceeEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CceEEEECCEecCcChHHH-hhcEEEec
Confidence            56788888999999999999  99999999999999999999999763    3333332211100   011 23467788


Q ss_pred             eCCCCcCCCCCc
Q 038053           79 DTPGLFDSSAGS   90 (231)
Q Consensus        79 Dtpg~~~~~~~~   90 (231)
                      +.|.+++..+..
T Consensus        80 q~~~~~~~~tv~   91 (220)
T cd03265          80 QDLSVDDELTGW   91 (220)
T ss_pred             CCccccccCcHH
Confidence            888777654443

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.28  E-value=2.1e-11  Score=91.82  Aligned_cols=134  Identities=14%  Similarity=0.114  Sum_probs=79.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhh
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLA  104 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~  104 (231)
                      +|+++|.+|||||||++.+++......     ..|.......... ....+.++|+||....           .......
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~-----------~~~~~~~   63 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEVVTT-----IPTIGFNVETVEY-KNVSFTVWDVGGQDKI-----------RPLWKHY   63 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCCCCC-----CCCcCcceEEEEE-CCEEEEEEECCCChhh-----------HHHHHHH
Confidence            489999999999999999999863211     1122122222333 5678899999996541           1112233


Q ss_pred             cCCccEEEEEEECCCCCCHHHHH----------hcCCCCcHHHHHHHHHhhH----HHHHhhc---------cchhhhhh
Q 038053          105 KGGIHAVLVVFSVRSRFSQEEEA----------ANGGQPYTDEFLAELKRGA----TELRDQQ---------AEVDSLKE  161 (231)
Q Consensus       105 ~~~~~~il~vvd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~----~~l~~~~---------~~i~~is~  161 (231)
                      +..+|++++|+|+++.-+.....          .....|++ .+.++.+...    +++...+         .++..+|+
T Consensus        64 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~pii-iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  142 (158)
T cd00878          64 YENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLL-IFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSA  142 (158)
T ss_pred             hccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEE-EEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeC
Confidence            46779999999998432111111          11233443 3345544211    1121111         15778999


Q ss_pred             hhHhhHHHHHHHHHH
Q 038053          162 YSKQEISKLMGQMQE  176 (231)
Q Consensus       162 ~~~~~i~~l~~~i~~  176 (231)
                      ++|.|+++++..+..
T Consensus       143 ~~~~gv~~~~~~l~~  157 (158)
T cd00878         143 VTGDGLDEGLDWLLQ  157 (158)
T ss_pred             CCCCCHHHHHHHHhh
Confidence            999999998877653

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd01866 Rab2 Rab2 subfamily

Probab=99.28  E-value=2e-11  Score=93.17  Aligned_cols=140  Identities=11%  Similarity=0.062  Sum_probs=78.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEee-CCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      .+|+++|.+|+|||||+|.+++.......  .+..+.+......... ....+.+.||||...           +.....
T Consensus         5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~~~~~   71 (168)
T cd01866           5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVH--DLTIGVEFGARMITIDGKQIKLQIWDTAGQES-----------FRSITR   71 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCccceeEEEEEEEECCEEEEEEEEECCCcHH-----------HHHHHH
Confidence            68999999999999999999987642211  1111121111112221 124677999999432           122223


Q ss_pred             hhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhh------HHHHHhh---cc-chhhhhhhh
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRG------ATELRDQ---QA-EVDSLKEYS  163 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~------~~~l~~~---~~-~i~~is~~~  163 (231)
                      ..+..+|++++++|+++.-+..+..         .....|.+ .+.++.+..      .......   .+ +++.+|+.+
T Consensus        72 ~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvi-vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~  150 (168)
T cd01866          72 SYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIM-LIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKT  150 (168)
T ss_pred             HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEE-EEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCC
Confidence            3446789999999998533322221         01122332 233333311      0111111   11 567789999


Q ss_pred             HhhHHHHHHHHHHH
Q 038053          164 KQEISKLMGQMQES  177 (231)
Q Consensus       164 ~~~i~~l~~~i~~~  177 (231)
                      +.|+.+++..+.+.
T Consensus       151 ~~~i~~~~~~~~~~  164 (168)
T cd01866         151 ASNVEEAFINTAKE  164 (168)
T ss_pred             CCCHHHHHHHHHHH
Confidence            99999988776553

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.28  E-value=3.3e-12  Score=101.79  Aligned_cols=85  Identities=18%  Similarity=0.092  Sum_probs=60.1

Q ss_pred             CCCCCC--cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE--EeeCCcEEEE
Q 038053            2 SSGMGE--RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT--VLKDGQVVNV   77 (231)
Q Consensus         2 ~~~~~~--~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~l   77 (231)
                      ++.|++  ++++++++|++.+|  ..++|+|+||||||||+++|+|...+    ..|.+.........  ........++
T Consensus         7 ~~~~~~~~~~il~~is~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~----~~G~i~~~g~~~~~~~~~~~~~i~~v   80 (220)
T cd03263           7 TKTYKKGTKPAVDDLSLNVYKG--EIFGLLGHNGAGKTTTLKMLTGELRP----TSGTAYINGYSIRTDRKAARQSLGYC   80 (220)
T ss_pred             EEEeCCCCceeecceEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCC----CCcEEEECCEecccchHHHhhhEEEe
Confidence            567776  78999999999999  99999999999999999999999873    33433322111000  0012346788


Q ss_pred             EeCCCCcCCCCCchH
Q 038053           78 IDTPGLFDSSAGSEF   92 (231)
Q Consensus        78 ~Dtpg~~~~~~~~~~   92 (231)
                      ++.|.+++..+..++
T Consensus        81 ~q~~~~~~~~tv~~~   95 (220)
T cd03263          81 PQFDALFDELTVREH   95 (220)
T ss_pred             cCcCCccccCCHHHH
Confidence            888888865554433

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.28  E-value=2.9e-12  Score=103.44  Aligned_cols=84  Identities=25%  Similarity=0.216  Sum_probs=59.9

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEEeeCCcEEEEEeC
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTVLKDGQVVNVIDT   80 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~Dt   80 (231)
                      ++.|+++.+++++++++.+|  .+++|+|+||||||||+++|+|...+    ..|.+....... ..........++++.
T Consensus         9 ~~~~~~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~----~~G~i~~~g~~~~~~~~~~~~i~~v~q~   82 (239)
T cd03296           9 SKRFGDFVALDDVSLDIPSG--ELVALLGPSGSGKTTLLRLIAGLERP----DSGTILFGGEDATDVPVQERNVGFVFQH   82 (239)
T ss_pred             EEEECCEEeeeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CceEEEECCEECCcCCccccceEEEecC
Confidence            56788888999999999999  99999999999999999999999863    333333222110 000112456788888


Q ss_pred             CCCcCCCCCch
Q 038053           81 PGLFDSSAGSE   91 (231)
Q Consensus        81 pg~~~~~~~~~   91 (231)
                      |.+++..+..+
T Consensus        83 ~~~~~~~tv~e   93 (239)
T cd03296          83 YALFRHMTVFD   93 (239)
T ss_pred             CcccCCCCHHH
Confidence            88876544433

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.27  E-value=1.8e-11  Score=94.96  Aligned_cols=135  Identities=10%  Similarity=0.097  Sum_probs=80.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+++|.+|||||||+|.+++......     ..|.......... .+..+.++|+||....           ......
T Consensus        18 ~~i~ivG~~~~GKTsli~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~~~D~~G~~~~-----------~~~~~~   80 (184)
T smart00178       18 AKILFLGLDNAGKTTLLHMLKNDRLAQH-----QPTQHPTSEELAI-GNIKFTTFDLGGHQQA-----------RRLWKD   80 (184)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCccc-----CCccccceEEEEE-CCEEEEEEECCCCHHH-----------HHHHHH
Confidence            7999999999999999999998754211     1122222222223 5677889999996531           111223


Q ss_pred             hcCCccEEEEEEECCCC--CCHHHHH----h----cCCCCcHHHHHHHHHhh----HHHHHhhc--------------c-
Q 038053          104 AKGGIHAVLVVFSVRSR--FSQEEEA----A----NGGQPYTDEFLAELKRG----ATELRDQQ--------------A-  154 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~--~~~~~~~----~----~~~~~~~~~~~~~~~~~----~~~l~~~~--------------~-  154 (231)
                      .+..+|++++|+|+++.  +......    .    ....|++ .+.++.|..    .+++.+.+              + 
T Consensus        81 ~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~pil-iv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~  159 (184)
T smart00178       81 YFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFL-ILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRP  159 (184)
T ss_pred             HhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEE-EEEeCccccCCCCHHHHHHHcCCCcccccccccCCce
Confidence            45788999999999843  1111111    1    1223333 334444421    12333222              1 


Q ss_pred             -chhhhhhhhHhhHHHHHHHHHH
Q 038053          155 -EVDSLKEYSKQEISKLMGQMQE  176 (231)
Q Consensus       155 -~i~~is~~~~~~i~~l~~~i~~  176 (231)
                       .++.+|+++|.|++++++-+.+
T Consensus       160 ~~i~~~Sa~~~~g~~~~~~wl~~  182 (184)
T smart00178      160 LEVFMCSVVRRMGYGEGFKWLSQ  182 (184)
T ss_pred             eEEEEeecccCCChHHHHHHHHh
Confidence             4777899999999998877654

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd04142 RRP22 RRP22 subfamily

Probab=99.27  E-value=3e-11  Score=94.82  Aligned_cols=148  Identities=17%  Similarity=0.107  Sum_probs=84.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      +|+++|.+|||||||++.+++......  ..+.++.......... .+  ..+.++||||.....   .....+......
T Consensus         2 kI~ivG~~~vGKTsLi~~~~~~~f~~~--~~pt~~~~~~~~~i~~-~~~~~~l~i~Dt~G~~~~~---~~~~~e~~~~~~   75 (198)
T cd04142           2 RVAVLGAPGVGKTAIVRQFLAQEFPEE--YIPTEHRRLYRPAVVL-SGRVYDLHILDVPNMQRYP---GTAGQEWMDPRF   75 (198)
T ss_pred             EEEEECCCCCcHHHHHHHHHcCCCCcc--cCCccccccceeEEEE-CCEEEEEEEEeCCCcccCC---ccchhHHHHHHH
Confidence            689999999999999999998653211  1222221111112222 34  356789999975421   112222222223


Q ss_pred             hhcCCccEEEEEEECCCCCCHHHHH--------h----cCCCCcHHHHHHHHHhhH------HHHHh----hc-cchhhh
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEEEA--------A----NGGQPYTDEFLAELKRGA------TELRD----QQ-AEVDSL  159 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~~~--------~----~~~~~~~~~~~~~~~~~~------~~l~~----~~-~~i~~i  159 (231)
                      ..+..+|++++|+|+++..+-....        .    ....|++ .+.++.|...      ..+..    .. .+++.+
T Consensus        76 ~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~pii-ivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~  154 (198)
T cd04142          76 RGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIV-VVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLEC  154 (198)
T ss_pred             hhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEE-EEEECccccccccccHHHHHHHHHHhcCCcEEEe
Confidence            3457899999999998543333221        1    1233443 3344443200      11211    11 256788


Q ss_pred             hhhhHhhHHHHHHHHHHHHH
Q 038053          160 KEYSKQEISKLMGQMQESYE  179 (231)
Q Consensus       160 s~~~~~~i~~l~~~i~~~~~  179 (231)
                      |+++|.|+++++..+....-
T Consensus       155 Sak~g~~v~~lf~~i~~~~~  174 (198)
T cd04142         155 SAKYNWHILLLFKELLISAT  174 (198)
T ss_pred             cCCCCCCHHHHHHHHHHHhh
Confidence            99999999999988876543

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.27  E-value=3e-12  Score=104.41  Aligned_cols=83  Identities=16%  Similarity=0.136  Sum_probs=60.4

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCC
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTP   81 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtp   81 (231)
                      ++.|+++.+|++++|++.+|  .+++|+|+||||||||+++|+|...+    ..|.++...... ... .....++++.|
T Consensus        19 ~~~~~~~~il~~isl~i~~G--e~~~I~G~NGsGKSTLlk~l~Gl~~p----~~G~i~~~g~~~-~~~-~~~i~~v~q~~   90 (257)
T PRK11247         19 SKRYGERTVLNQLDLHIPAG--QFVAVVGRSGCGKSTLLRLLAGLETP----SAGELLAGTAPL-AEA-REDTRLMFQDA   90 (257)
T ss_pred             EEEECCcceeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCC----CCeEEEECCEEH-HHh-hCceEEEecCc
Confidence            56788888999999999999  99999999999999999999999873    334333211110 011 34567888888


Q ss_pred             CCcCCCCCchH
Q 038053           82 GLFDSSAGSEF   92 (231)
Q Consensus        82 g~~~~~~~~~~   92 (231)
                      .+++..+..++
T Consensus        91 ~l~~~~tv~en  101 (257)
T PRK11247         91 RLLPWKKVIDN  101 (257)
T ss_pred             cCCCCCcHHHH
Confidence            88765554443

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.27  E-value=1.4e-12  Score=102.21  Aligned_cols=87  Identities=17%  Similarity=0.097  Sum_probs=63.5

Q ss_pred             CCCCC-CCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeee-eeeE-----EeeCCc
Q 038053            1 MSSGM-GERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCE-MKTT-----VLKDGQ   73 (231)
Q Consensus         1 ~~~~~-~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~-~~~~-----~~~~~~   73 (231)
                      +++.| +++.++++|+|.+++|  ..|+|||++|||||||+++|.|...+    +.|.+..... ....     ......
T Consensus         9 l~k~yp~~~~aL~~Vnl~I~~G--E~VaiIG~SGaGKSTLLR~lngl~d~----t~G~i~~~g~~i~~~~~k~lr~~r~~   82 (258)
T COG3638           9 LSKTYPGGHQALKDVNLEINQG--EMVAIIGPSGAGKSTLLRSLNGLVDP----TSGEILFNGVQITKLKGKELRKLRRD   82 (258)
T ss_pred             eeeecCCCceeeeeEeEEeCCC--cEEEEECCCCCcHHHHHHHHhcccCC----CcceEEecccchhccchHHHHHHHHh
Confidence            46788 9999999999999999  99999999999999999999997763    3332222110 0000     001356


Q ss_pred             EEEEEeCCCCcCCCCCchHH
Q 038053           74 VVNVIDTPGLFDSSAGSEFV   93 (231)
Q Consensus        74 ~~~l~Dtpg~~~~~~~~~~~   93 (231)
                      .+++++.|++.+..++.+++
T Consensus        83 iGmIfQ~~nLv~r~sv~~NV  102 (258)
T COG3638          83 IGMIFQQFNLVPRLSVLENV  102 (258)
T ss_pred             ceeEeccCCcccccHHHHHH
Confidence            78999999998866554443

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.27  E-value=2.1e-11  Score=92.34  Aligned_cols=139  Identities=14%  Similarity=0.118  Sum_probs=79.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEe-eCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      +|+++|++|||||||+|.+++......  ..+....+........ .....+.++||||...           +......
T Consensus         2 ki~~vG~~~vGKTsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~~~~   68 (168)
T cd04119           2 KVISMGNSGVGKSCIIKRYCEGRFVSK--YLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE-----------YLEVRNE   68 (168)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCC--CCCccceeEEEEEEEECCeEEEEEEEECCccHH-----------HHHHHHH
Confidence            699999999999999999999864211  1111111111111221 1234677999999643           1112223


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH---------hc-----CCCCcHHHHHHHHHhh------H---HHHHhhc-cchhhh
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA---------AN-----GGQPYTDEFLAELKRG------A---TELRDQQ-AEVDSL  159 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~---------~~-----~~~~~~~~~~~~~~~~------~---~~l~~~~-~~i~~i  159 (231)
                      .+..+|++++|+|+++.-+.....         ..     ...|++ .+.++.|..      .   ..+.... .+++.+
T Consensus        69 ~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  147 (168)
T cd04119          69 FYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVV-VCANKIDLTKHRAVSEDEGRLWAESKGFKYFET  147 (168)
T ss_pred             HhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEE-EEEEchhcccccccCHHHHHHHHHHcCCeEEEE
Confidence            346789999999998542222111         11     122333 333443321      0   1121112 267789


Q ss_pred             hhhhHhhHHHHHHHHHHH
Q 038053          160 KEYSKQEISKLMGQMQES  177 (231)
Q Consensus       160 s~~~~~~i~~l~~~i~~~  177 (231)
                      |++++.|+.+++..+...
T Consensus       148 Sa~~~~gi~~l~~~l~~~  165 (168)
T cd04119         148 SACTGEGVNEMFQTLFSS  165 (168)
T ss_pred             ECCCCCCHHHHHHHHHHH
Confidence            999999999998887653

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd01865 Rab3 Rab3 subfamily

Probab=99.27  E-value=2.6e-11  Score=92.20  Aligned_cols=140  Identities=12%  Similarity=0.075  Sum_probs=79.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEee-CCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      .+|+++|.+|||||||+|.+++......  ..+.............. ....+.+.||||...           +.....
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~-----------~~~~~~   68 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSA--FVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQER-----------YRTITT   68 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCceeeEEEEEEEEECCEEEEEEEEECCChHH-----------HHHHHH
Confidence            5899999999999999999998764211  11111111111112110 124577899999543           111123


Q ss_pred             hhcCCccEEEEEEECCCCCCHHHHH--------hc-CCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhhhh
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEEEA--------AN-GGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKEYS  163 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~~~  163 (231)
                      ..+..+|++++|+|.++.-+.....        .. ...|++ .+.++.|..         ...+...++ +++.+|+++
T Consensus        69 ~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  147 (165)
T cd01865          69 AYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVI-LVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKE  147 (165)
T ss_pred             HHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEE-EEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCC
Confidence            3457889999999997432222111        11 122222 333443310         012333333 677899999


Q ss_pred             HhhHHHHHHHHHHH
Q 038053          164 KQEISKLMGQMQES  177 (231)
Q Consensus       164 ~~~i~~l~~~i~~~  177 (231)
                      +.|+.++++.+...
T Consensus       148 ~~gv~~l~~~l~~~  161 (165)
T cd01865         148 NINVKQVFERLVDI  161 (165)
T ss_pred             CCCHHHHHHHHHHH
Confidence            99999999888664

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.27  E-value=2.4e-12  Score=102.12  Aligned_cols=84  Identities=21%  Similarity=0.120  Sum_probs=59.9

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE-----EeeCCcEEE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT-----VLKDGQVVN   76 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~-----~~~~~~~~~   76 (231)
                      ++.|++..++++++|++.+|  .+++|+|+||||||||+++|+|...+    ..|.++........     ........+
T Consensus         7 ~~~~~~~~~l~~~s~~i~~G--~~~~l~G~nGsGKSTLl~~l~G~~~~----~~G~i~~~g~~~~~~~~~~~~~~~~i~~   80 (213)
T cd03262           7 HKSFGDFHVLKGIDLTVKKG--EVVVIIGPSGSGKSTLLRCINLLEEP----DSGTIIIDGLKLTDDKKNINELRQKVGM   80 (213)
T ss_pred             EEEECCeEeecCceEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CCceEEECCEECCccchhHHHHHhcceE
Confidence            56777788999999999999  99999999999999999999999873    34433332211100     001245678


Q ss_pred             EEeCCCCcCCCCCch
Q 038053           77 VIDTPGLFDSSAGSE   91 (231)
Q Consensus        77 l~Dtpg~~~~~~~~~   91 (231)
                      +++.|.+++..+..+
T Consensus        81 ~~q~~~~~~~~t~~e   95 (213)
T cd03262          81 VFQQFNLFPHLTVLE   95 (213)
T ss_pred             EecccccCCCCcHHH
Confidence            888888776544433

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.27  E-value=4.3e-12  Score=102.00  Aligned_cols=85  Identities=21%  Similarity=0.150  Sum_probs=60.3

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE----EeeCCcEEEE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT----VLKDGQVVNV   77 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~l   77 (231)
                      ++.|+++.++++++|++.+|  .+++|+|+||||||||+++|+|...+    ..|.+.........    ........++
T Consensus         7 ~~~~~~~~~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p----~~G~i~~~g~~~~~~~~~~~~~~~i~~~   80 (232)
T cd03218           7 SKRYGKRKVVNGVSLSVKQG--EIVGLLGPNGAGKTTTFYMIVGLVKP----DSGKILLDGQDITKLPMHKRARLGIGYL   80 (232)
T ss_pred             EEEeCCEEeeccceeEecCC--cEEEEECCCCCCHHHHHHHHhCCCCC----CCcEEEECCEecccCCHhHHHhccEEEe
Confidence            56788888999999999999  99999999999999999999999873    33433332211000    0002346778


Q ss_pred             EeCCCCcCCCCCchH
Q 038053           78 IDTPGLFDSSAGSEF   92 (231)
Q Consensus        78 ~Dtpg~~~~~~~~~~   92 (231)
                      ++.|.+++..+..++
T Consensus        81 ~q~~~~~~~~tv~~~   95 (232)
T cd03218          81 PQEASIFRKLTVEEN   95 (232)
T ss_pred             cCCccccccCcHHHH
Confidence            888888775554433

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.27  E-value=3e-12  Score=106.89  Aligned_cols=85  Identities=13%  Similarity=-0.011  Sum_probs=61.5

Q ss_pred             CCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE--EeeCCcEEEEEeC
Q 038053            3 SGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT--VLKDGQVVNVIDT   80 (231)
Q Consensus         3 ~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~l~Dt   80 (231)
                      +.|+++.++++++|++++|  .+++|+|+||||||||+++|+|...+    ..|.+.........  ........++++.
T Consensus         1 k~y~~~~~l~~vs~~i~~G--e~~~l~G~NGaGKSTLl~~l~Gl~~p----~~G~i~~~g~~~~~~~~~~~~~i~~~~q~   74 (302)
T TIGR01188         1 KVYGDFKAVDGVNFKVREG--EVFGFLGPNGAGKTTTIRMLTTLLRP----TSGTARVAGYDVVREPRKVRRSIGIVPQY   74 (302)
T ss_pred             CeeCCeeEEeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCC----CceEEEECCEEcccCHHHHHhhcEEecCC
Confidence            4688889999999999999  99999999999999999999999873    34433332211000  0002346788999


Q ss_pred             CCCcCCCCCchHH
Q 038053           81 PGLFDSSAGSEFV   93 (231)
Q Consensus        81 pg~~~~~~~~~~~   93 (231)
                      +.+++..+..+.+
T Consensus        75 ~~~~~~~tv~e~l   87 (302)
T TIGR01188        75 ASVDEDLTGRENL   87 (302)
T ss_pred             CCCCCCCcHHHHH
Confidence            9888766654443

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.27  E-value=4.9e-12  Score=101.73  Aligned_cols=86  Identities=20%  Similarity=0.144  Sum_probs=61.2

Q ss_pred             CCCCCCCc----ccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEE------ee
Q 038053            1 MSSGMGER----VIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTV------LK   70 (231)
Q Consensus         1 ~~~~~~~~----~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~------~~   70 (231)
                      ++++|+++    +++++++|++.+|  .+++|+|+||||||||+++|+|...+    ..|.+..........      ..
T Consensus         7 l~~~~~~~~~~~~il~~~s~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~----~~G~i~~~g~~~~~~~~~~~~~~   80 (233)
T cd03258           7 VSKVFGDTGGKVTALKDVSLSVPKG--EIFGIIGRSGAGKSTLIRCINGLERP----TSGSVLVDGTDLTLLSGKELRKA   80 (233)
T ss_pred             ceEEccCCCCceeeeecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CCceEEECCEEcccCCHHHHHHH
Confidence            35677766    8999999999999  99999999999999999999999873    344343322211000      00


Q ss_pred             CCcEEEEEeCCCCcCCCCCchH
Q 038053           71 DGQVVNVIDTPGLFDSSAGSEF   92 (231)
Q Consensus        71 ~~~~~~l~Dtpg~~~~~~~~~~   92 (231)
                      .....++++.|.+++..+..++
T Consensus        81 ~~~i~~~~q~~~~~~~~t~~e~  102 (233)
T cd03258          81 RRRIGMIFQHFNLLSSRTVFEN  102 (233)
T ss_pred             HhheEEEccCcccCCCCcHHHH
Confidence            2346788899988875554443

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd04151 Arl1 Arl1 subfamily

Probab=99.27  E-value=1.8e-11  Score=92.34  Aligned_cols=133  Identities=14%  Similarity=0.101  Sum_probs=78.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhh
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLA  104 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~  104 (231)
                      +|+++|++|+|||||++.++......   ..+  |.......... .+..+.++||||...           +.......
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~---~~~--t~~~~~~~~~~-~~~~~~i~Dt~G~~~-----------~~~~~~~~   63 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVT---TIP--TIGFNVETVTY-KNLKFQVWDLGGQTS-----------IRPYWRCY   63 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcC---cCC--ccCcCeEEEEE-CCEEEEEEECCCCHH-----------HHHHHHHH
Confidence            48999999999999999997655321   111  22112222223 567788999999753           11112234


Q ss_pred             cCCccEEEEEEECCCCCCHH--HHH----hc----CCCCcHHHHHHHHHhh----HHHHHhhc---------cchhhhhh
Q 038053          105 KGGIHAVLVVFSVRSRFSQE--EEA----AN----GGQPYTDEFLAELKRG----ATELRDQQ---------AEVDSLKE  161 (231)
Q Consensus       105 ~~~~~~il~vvd~~~~~~~~--~~~----~~----~~~~~~~~~~~~~~~~----~~~l~~~~---------~~i~~is~  161 (231)
                      +..+|++++|+|+++.-+..  ...    ..    ...|++ .+++++|..    ...+...+         .+++++|+
T Consensus        64 ~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii-iv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa  142 (158)
T cd04151          64 YSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLL-VFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSA  142 (158)
T ss_pred             hcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEE-EEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeec
Confidence            46789999999998432111  111    11    133443 445555421    01222111         14788999


Q ss_pred             hhHhhHHHHHHHHH
Q 038053          162 YSKQEISKLMGQMQ  175 (231)
Q Consensus       162 ~~~~~i~~l~~~i~  175 (231)
                      ++|.|+++++..+.
T Consensus       143 ~~~~gi~~l~~~l~  156 (158)
T cd04151         143 IKGEGLDEGMDWLV  156 (158)
T ss_pred             cCCCCHHHHHHHHh
Confidence            99999999987764

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.27  E-value=3.9e-12  Score=101.00  Aligned_cols=85  Identities=18%  Similarity=0.082  Sum_probs=59.4

Q ss_pred             CCCC-CCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-EE-----eeCCcE
Q 038053            2 SSGM-GERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-TV-----LKDGQV   74 (231)
Q Consensus         2 ~~~~-~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-~~-----~~~~~~   74 (231)
                      ++.| ++..++++++|++.+|  .+++|+|+||||||||+++|+|...+    ..|.++....... ..     ......
T Consensus         8 ~~~~~~~~~il~~is~~i~~G--~~~~l~G~nGsGKSTLl~~i~Gl~~~----~~G~i~~~g~~~~~~~~~~~~~~~~~i   81 (214)
T TIGR02673         8 SKAYPGGVAALHDVSLHIRKG--EFLFLTGPSGAGKTTLLKLLYGALTP----SRGQVRIAGEDVNRLRGRQLPLLRRRI   81 (214)
T ss_pred             eEEeCCCceeecceeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CCceEEECCEEcccCCHHHHHHHHhhe
Confidence            5567 4678999999999999  99999999999999999999999763    3443333221100 00     002356


Q ss_pred             EEEEeCCCCcCCCCCchH
Q 038053           75 VNVIDTPGLFDSSAGSEF   92 (231)
Q Consensus        75 ~~l~Dtpg~~~~~~~~~~   92 (231)
                      .++++.|.+++..+..++
T Consensus        82 ~~~~q~~~~~~~~tv~~~   99 (214)
T TIGR02673        82 GVVFQDFRLLPDRTVYEN   99 (214)
T ss_pred             EEEecChhhccCCcHHHH
Confidence            788888888765544333

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.26  E-value=4.7e-12  Score=107.77  Aligned_cols=85  Identities=15%  Similarity=0.072  Sum_probs=64.9

Q ss_pred             CCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEe-------eCCcEE
Q 038053            3 SGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVL-------KDGQVV   75 (231)
Q Consensus         3 ~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-------~~~~~~   75 (231)
                      |+|+++.++++++|++++|  ..++|+|+||||||||+++|+|...+    ..|.+...........       ......
T Consensus         1 ~~~~~~~~l~~vs~~i~~G--ei~~l~G~sGsGKSTLLr~L~Gl~~p----~~G~I~i~G~~i~~~~~~~~~~~rr~~i~   74 (363)
T TIGR01186         1 KKTGGKKGVNDADLAIAKG--EIFVIMGLSGSGKSTTVRMLNRLIEP----TAGQIFIDGENIMKQSPVELREVRRKKIG   74 (363)
T ss_pred             CccCCceeEEeeEEEEcCC--CEEEEECCCCChHHHHHHHHhCCCCC----CceEEEECCEECCcCCHHHHHHHHhCcEE
Confidence            6789999999999999999  99999999999999999999999884    4443333222111000       024678


Q ss_pred             EEEeCCCCcCCCCCchHH
Q 038053           76 NVIDTPGLFDSSAGSEFV   93 (231)
Q Consensus        76 ~l~Dtpg~~~~~~~~~~~   93 (231)
                      ++++.+++++..++.+++
T Consensus        75 ~v~Q~~~l~~~~TV~eNi   92 (363)
T TIGR01186        75 MVFQQFALFPHMTILQNT   92 (363)
T ss_pred             EEECCCcCCCCCCHHHHH
Confidence            899999999887776654

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.26  E-value=3.4e-12  Score=102.43  Aligned_cols=84  Identities=18%  Similarity=0.162  Sum_probs=60.5

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-E---EeeCCcEEEE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-T---VLKDGQVVNV   77 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-~---~~~~~~~~~l   77 (231)
                      ++.|++++++++++|++.+|  .+++|+|+||||||||+++|+|...+    ..|.++....... .   ........++
T Consensus         7 ~~~~~~~~~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~----~~G~i~~~g~~~~~~~~~~~~~~~i~~~   80 (230)
T TIGR03410         7 NVYYGQSHILRGVSLEVPKG--EVTCVLGRNGVGKTTLLKTLMGLLPV----KSGSIRLDGEDITKLPPHERARAGIAYV   80 (230)
T ss_pred             EEEeCCeEEecceeeEECCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CCCEEEECCEECCCCCHHHHHHhCeEEe
Confidence            56788888999999999999  99999999999999999999999873    4444443221100 0   0002346788


Q ss_pred             EeCCCCcCCCCCch
Q 038053           78 IDTPGLFDSSAGSE   91 (231)
Q Consensus        78 ~Dtpg~~~~~~~~~   91 (231)
                      ++.+.+++..+..+
T Consensus        81 ~q~~~~~~~~tv~~   94 (230)
T TIGR03410        81 PQGREIFPRLTVEE   94 (230)
T ss_pred             ccCCcccCCCcHHH
Confidence            89888887544433

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.26  E-value=2.3e-10  Score=86.33  Aligned_cols=144  Identities=16%  Similarity=0.266  Sum_probs=78.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCC-ccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHH---HHHHH
Q 038053           26 VVLLGRTGNGKSATGNSILGRK-AFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKE---IVKRI  101 (231)
Q Consensus        26 i~lvG~~g~GKSTLin~l~g~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~---~~~~~  101 (231)
                      |+++|.+|||||||+|.|++.. .... ....+.|.....  ..  ....+.++||||+...... ......   ....+
T Consensus         2 i~l~G~~g~GKTtL~~~l~~~~~~~~~-~~~~~~t~~~~~--~~--~~~~~~~~D~~g~~~~~~~-~~~~~~~~~~~~~~   75 (170)
T cd01876           2 IAFAGRSNVGKSSLINALTNRKKLART-SKTPGKTQLINF--FN--VNDKFRLVDLPGYGYAKVS-KEVKEKWGKLIEEY   75 (170)
T ss_pred             EEEEcCCCCCHHHHHHHHhcCCceeee-cCCCCcceeEEE--EE--ccCeEEEecCCCccccccC-HHHHHHHHHHHHHH
Confidence            7999999999999999999432 2111 123334433222  11  2337889999998653221 111111   12222


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHh------h--HHHHHh------hccchhhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKR------G--ATELRD------QQAEVDSLKEY  162 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~------~--~~~l~~------~~~~i~~is~~  162 (231)
                      .......+.+++++|........+..     .....|.+ .++++.+.      .  ...+..      ...++.++|++
T Consensus        76 ~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi-~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~  154 (170)
T cd01876          76 LENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFL-VVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSL  154 (170)
T ss_pred             HHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEE-EEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecC
Confidence            23335678899999987554444322     11122222 12222221      0  011211      12267788999


Q ss_pred             hHhhHHHHHHHHHH
Q 038053          163 SKQEISKLMGQMQE  176 (231)
Q Consensus       163 ~~~~i~~l~~~i~~  176 (231)
                      ++.++.+++..+.+
T Consensus       155 ~~~~~~~l~~~l~~  168 (170)
T cd01876         155 KGQGIDELRALIEK  168 (170)
T ss_pred             CCCCHHHHHHHHHH
Confidence            99999998887765

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.26  E-value=4.5e-12  Score=100.89  Aligned_cols=85  Identities=20%  Similarity=0.123  Sum_probs=60.4

Q ss_pred             CCCCCCc----ccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE--EeeCCcEE
Q 038053            2 SSGMGER----VIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT--VLKDGQVV   75 (231)
Q Consensus         2 ~~~~~~~----~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~   75 (231)
                      ++.|++.    ++++++++++++|  .+++|+|+||||||||+++|+|...+    ..|.+.........  ........
T Consensus         8 ~~~~~~~~~~~~il~~~sl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~----~~G~i~~~g~~~~~~~~~~~~~i~   81 (218)
T cd03266           8 TKRFRDVKKTVQAVDGVSFTVKPG--EVTGLLGPNGAGKTTTLRMLAGLLEP----DAGFATVDGFDVVKEPAEARRRLG   81 (218)
T ss_pred             EEecCCCCccceeecceEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCcCC----CCceEEECCEEcccCHHHHHhhEE
Confidence            5677765    7999999999999  99999999999999999999999873    34433332211100  01134577


Q ss_pred             EEEeCCCCcCCCCCchH
Q 038053           76 NVIDTPGLFDSSAGSEF   92 (231)
Q Consensus        76 ~l~Dtpg~~~~~~~~~~   92 (231)
                      ++++.|.+++..+..++
T Consensus        82 ~~~q~~~~~~~~tv~e~   98 (218)
T cd03266          82 FVSDSTGLYDRLTAREN   98 (218)
T ss_pred             EecCCcccCcCCCHHHH
Confidence            88898888775554433

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.26  E-value=6.1e-12  Score=103.37  Aligned_cols=85  Identities=19%  Similarity=0.111  Sum_probs=61.3

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE----E---eeCCcE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT----V---LKDGQV   74 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~----~---~~~~~~   74 (231)
                      ++.|++..++++++|++++|  .+++|+|+||||||||+++|+|...+    ..|.+.........    .   ......
T Consensus        31 ~~~~~~~~il~~is~~i~~G--e~~~l~G~nGsGKSTLl~~L~Gl~~p----~~G~i~i~g~~~~~~~~~~~~~~~~~~i  104 (269)
T cd03294          31 LKKTGQTVGVNDVSLDVREG--EIFVIMGLSGSGKSTLLRCINRLIEP----TSGKVLIDGQDIAAMSRKELRELRRKKI  104 (269)
T ss_pred             hhhcCCceEeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCC----CCeEEEECCEEccccChhhhhhhhcCcE
Confidence            56788888999999999999  99999999999999999999999873    33433332211100    0   002356


Q ss_pred             EEEEeCCCCcCCCCCchH
Q 038053           75 VNVIDTPGLFDSSAGSEF   92 (231)
Q Consensus        75 ~~l~Dtpg~~~~~~~~~~   92 (231)
                      .++++.|.+++..+..++
T Consensus       105 ~~v~q~~~~~~~~tv~e~  122 (269)
T cd03294         105 SMVFQSFALLPHRTVLEN  122 (269)
T ss_pred             EEEecCcccCCCCcHHHH
Confidence            788998888875555444

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd01868 Rab11_like Rab11-like

Probab=99.26  E-value=2.3e-11  Score=92.21  Aligned_cols=138  Identities=14%  Similarity=0.130  Sum_probs=79.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+++|++|||||||+|.+++......  ..+..+.+........ .+  ..+.++|+||...           +....
T Consensus         4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~-----------~~~~~   69 (165)
T cd01868           4 FKIVLIGDSGVGKSNLLSRFTRNEFNLD--SKSTIGVEFATRSIQI-DGKTIKAQIWDTAGQER-----------YRAIT   69 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCccceEEEEEEEEE-CCEEEEEEEEeCCChHH-----------HHHHH
Confidence            5899999999999999999998764211  2233332222222222 23  3567999999542           11111


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH--------hc-CCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------AN-GGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKEY  162 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~~  162 (231)
                      ...+..++++++|+|+++..+..+..        .. ...|++ .+.++.|..         ...+....+ +++.+|+.
T Consensus        70 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~-vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  148 (165)
T cd01868          70 SAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIM-LVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSAL  148 (165)
T ss_pred             HHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEE-EEEECccccccccCCHHHHHHHHHHcCCEEEEEECC
Confidence            22346789999999998533333221        11 123332 233443310         012221112 57778999


Q ss_pred             hHhhHHHHHHHHHH
Q 038053          163 SKQEISKLMGQMQE  176 (231)
Q Consensus       163 ~~~~i~~l~~~i~~  176 (231)
                      +|.|+..++..+..
T Consensus       149 ~~~~v~~l~~~l~~  162 (165)
T cd01868         149 DGTNVEEAFKQLLT  162 (165)
T ss_pred             CCCCHHHHHHHHHH
Confidence            99999999888765

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd01863 Rab18 Rab18 subfamily

Probab=99.26  E-value=5.9e-11  Score=89.59  Aligned_cols=138  Identities=13%  Similarity=0.125  Sum_probs=76.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEee-CCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      +|+++|++|||||||+|.+++......  ..+..+........... ....+.++||||....           ......
T Consensus         2 ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-----------~~~~~~   68 (161)
T cd01863           2 KILLIGDSGVGKSSLLLRFTDDTFDPD--LAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERF-----------RTLTSS   68 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcc--cCCcccceEEEEEEEECCEEEEEEEEECCCchhh-----------hhhhHH
Confidence            799999999999999999998764221  12222211111112221 2245778999995431           111122


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH----------hcCCCCcHHHHHHHHHhh--------HHHHHhhcc-chhhhhhhhH
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA----------ANGGQPYTDEFLAELKRG--------ATELRDQQA-EVDSLKEYSK  164 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~--------~~~l~~~~~-~i~~is~~~~  164 (231)
                      .+..+|++++++|+++.-+.....          .....|.+ .+.++.+..        ...+....+ +++.+|+.+|
T Consensus        69 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~-iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  147 (161)
T cd01863          69 YYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKM-LVGNKIDKENREVTREEGLKFARKHNMLFIETSAKTR  147 (161)
T ss_pred             HhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEE-EEEECCcccccccCHHHHHHHHHHcCCEEEEEecCCC
Confidence            346789999999998433322211          11122222 222333211        011111122 6788899999


Q ss_pred             hhHHHHHHHHHH
Q 038053          165 QEISKLMGQMQE  176 (231)
Q Consensus       165 ~~i~~l~~~i~~  176 (231)
                      .|+.+++..+..
T Consensus       148 ~gi~~~~~~~~~  159 (161)
T cd01863         148 DGVQQAFEELVE  159 (161)
T ss_pred             CCHHHHHHHHHH
Confidence            999999887654

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04113 Rab4 Rab4 subfamily

Probab=99.26  E-value=2.4e-11  Score=91.76  Aligned_cols=138  Identities=12%  Similarity=0.105  Sum_probs=77.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEee-CCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      +|+++|++|+|||||++.+++......  ..+..+........... ....+.+.|+||...           +......
T Consensus         2 ki~v~G~~~vGKTsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~-----------~~~~~~~   68 (161)
T cd04113           2 KFIIIGSSGTGKSCLLHRFVENKFKED--SQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQER-----------FRSVTRS   68 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCC--CCCceeeeEEEEEEEECCEEEEEEEEECcchHH-----------HHHhHHH
Confidence            699999999999999999998764211  11111111111112221 124567999999643           1111223


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhhH---------HHHHhhc-cchhhhhhhhH
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRGA---------TELRDQQ-AEVDSLKEYSK  164 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~---------~~l~~~~-~~i~~is~~~~  164 (231)
                      .+..+|++++++|+++..+.....         .....|.+ .+.++.|...         ..+.... -+++.+|++++
T Consensus        69 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ii-vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  147 (161)
T cd04113          69 YYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVI-LVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTG  147 (161)
T ss_pred             HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEE-EEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCC
Confidence            346789999999998543322211         11223332 2333333110         1111111 26777899999


Q ss_pred             hhHHHHHHHHHH
Q 038053          165 QEISKLMGQMQE  176 (231)
Q Consensus       165 ~~i~~l~~~i~~  176 (231)
                      .|+.+++..+..
T Consensus       148 ~~i~~~~~~~~~  159 (161)
T cd04113         148 ENVEEAFLKCAR  159 (161)
T ss_pred             CCHHHHHHHHHH
Confidence            999998887754

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.26  E-value=4.3e-12  Score=100.65  Aligned_cols=84  Identities=21%  Similarity=0.196  Sum_probs=59.1

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEEeeCCcEEEEEeC
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTVLKDGQVVNVIDT   80 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~Dt   80 (231)
                      ++.|++++++++++|++.+|  .+++|+|+||||||||+++|+|...+    ..|.+....... ..........++++.
T Consensus         7 ~~~~~~~~~l~~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~----~~G~v~~~g~~~~~~~~~~~~i~~~~q~   80 (213)
T cd03301           7 TKRFGNVTALDDLNLDIADG--EFVVLLGPSGCGKTTTLRMIAGLEEP----TSGRIYIGGRDVTDLPPKDRDIAMVFQN   80 (213)
T ss_pred             EEEECCeeeeeceEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCC----CceEEEECCEECCcCCcccceEEEEecC
Confidence            56778888999999999999  99999999999999999999999763    333333222110 000002346778888


Q ss_pred             CCCcCCCCCch
Q 038053           81 PGLFDSSAGSE   91 (231)
Q Consensus        81 pg~~~~~~~~~   91 (231)
                      +.+++..+..+
T Consensus        81 ~~~~~~~tv~~   91 (213)
T cd03301          81 YALYPHMTVYD   91 (213)
T ss_pred             hhhccCCCHHH
Confidence            88776444433

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.26  E-value=4.9e-11  Score=90.83  Aligned_cols=140  Identities=14%  Similarity=0.096  Sum_probs=79.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+++|++|+|||||++.+++......  ..+............. .+  ..+.+.||||....           ....
T Consensus         4 ~ki~vvG~~~~GKSsl~~~~~~~~f~~~--~~~t~~~~~~~~~~~~-~~~~~~l~l~D~~g~~~~-----------~~~~   69 (167)
T cd01867           4 FKLLLIGDSGVGKSCLLLRFSEDSFNPS--FISTIGIDFKIRTIEL-DGKKIKLQIWDTAGQERF-----------RTIT   69 (167)
T ss_pred             eEEEEECCCCCCHHHHHHHHhhCcCCcc--cccCccceEEEEEEEE-CCEEEEEEEEeCCchHHH-----------HHHH
Confidence            6899999999999999999998753211  1111111111122222 22  35678999995421           1111


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH--------h-cCCCCcHHHHHHHHHh---------hHHHHHhhc-cchhhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------A-NGGQPYTDEFLAELKR---------GATELRDQQ-AEVDSLKEY  162 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~---------~~~~l~~~~-~~i~~is~~  162 (231)
                      ...+..+|++++++|+++..+-....        . ....|++ .+.++.|.         ....+.... .+++.+|+.
T Consensus        70 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i-iv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  148 (167)
T cd01867          70 TAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERM-LVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAK  148 (167)
T ss_pred             HHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEE-EEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCC
Confidence            23346889999999997543322221        1 1122322 22222221         001122222 267889999


Q ss_pred             hHhhHHHHHHHHHHHH
Q 038053          163 SKQEISKLMGQMQESY  178 (231)
Q Consensus       163 ~~~~i~~l~~~i~~~~  178 (231)
                      ++.|+.+++..+.+.+
T Consensus       149 ~~~~v~~~~~~i~~~~  164 (167)
T cd01867         149 ANINVEEAFFTLAKDI  164 (167)
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            9999999988877643

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd00154 Rab Rab family

Probab=99.26  E-value=1.6e-11  Score=91.72  Aligned_cols=135  Identities=16%  Similarity=0.159  Sum_probs=77.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee--EEe-eCCcEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT--TVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~--~~~-~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      +|+++|++|+|||||+|.+++......    ...|.......  ... .....+.++|+||...           +....
T Consensus         2 ~i~~~G~~~~GKStl~~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-----------~~~~~   66 (159)
T cd00154           2 KIVLIGDSGVGKTSLLLRFVDGKFDEN----YKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQER-----------FRSIT   66 (159)
T ss_pred             eEEEECCCCCCHHHHHHHHHhCcCCCc----cCCceeeeeEEEEEEECCEEEEEEEEecCChHH-----------HHHHH
Confidence            699999999999999999998876322    11122111211  111 0235677899999643           11123


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH--------hc-CCCCcHHHHHHHHHhh-H-----HH---HHhh-ccchhhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------AN-GGQPYTDEFLAELKRG-A-----TE---LRDQ-QAEVDSLKEY  162 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~-~-----~~---l~~~-~~~i~~is~~  162 (231)
                      ...+..+|++++++|+++.-+.....        .. ...|+. .++++.+.. .     ..   +... ..+++.+|+.
T Consensus        67 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~  145 (159)
T cd00154          67 PSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPII-LVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAK  145 (159)
T ss_pred             HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEE-EEEEcccccccccccHHHHHHHHHHcCCeEEEEecC
Confidence            33446789999999998421111111        11 123333 333443321 0     11   2211 1267778999


Q ss_pred             hHhhHHHHHHHHH
Q 038053          163 SKQEISKLMGQMQ  175 (231)
Q Consensus       163 ~~~~i~~l~~~i~  175 (231)
                      ++.|+++++..+.
T Consensus       146 ~~~~i~~~~~~i~  158 (159)
T cd00154         146 TGENVEELFQSLA  158 (159)
T ss_pred             CCCCHHHHHHHHh
Confidence            9999998887653

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd00880 Era_like Era (E

Probab=99.26  E-value=1.6e-10  Score=86.09  Aligned_cols=143  Identities=24%  Similarity=0.220  Sum_probs=85.7

Q ss_pred             EEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhhcCC
Q 038053           28 LLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGG  107 (231)
Q Consensus        28 lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~  107 (231)
                      ++|++|+|||||+|.|++......+ ...+.|...............+.++||||+............    ........
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~----~~~~~~~~   75 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVS-PVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREE----LARRVLER   75 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccC-CCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHH----HHHHHHHh
Confidence            5899999999999999998664332 233444443333333322668899999998865433222111    22233467


Q ss_pred             ccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhhH----HHH-------Hhh--ccchhhhhhhhHhhHHH
Q 038053          108 IHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRGA----TEL-------RDQ--QAEVDSLKEYSKQEISK  169 (231)
Q Consensus       108 ~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~----~~l-------~~~--~~~i~~is~~~~~~i~~  169 (231)
                      +|.+++++++..........     .....|.+ .++++.+...    ...       ...  ..+++.+|+.++.|+..
T Consensus        76 ~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~i-vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~  154 (163)
T cd00880          76 ADLILFVVDADLRADEEEEKLLELLRERGKPVL-LVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDE  154 (163)
T ss_pred             CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEE-EEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHH
Confidence            89999999998665555542     22233332 3344433111    010       111  12677789999999998


Q ss_pred             HHHHHHH
Q 038053          170 LMGQMQE  176 (231)
Q Consensus       170 l~~~i~~  176 (231)
                      ++..+..
T Consensus       155 l~~~l~~  161 (163)
T cd00880         155 LREALIE  161 (163)
T ss_pred             HHHHHHh
Confidence            8887765

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>cd01864 Rab19 Rab19 subfamily

Probab=99.26  E-value=2.6e-11  Score=92.05  Aligned_cols=138  Identities=14%  Similarity=0.129  Sum_probs=79.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+++|++|+|||||++.+.+......  ..+....+........ .+  ..+.++||||...           +....
T Consensus         4 ~kv~vvG~~~~GKTsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~-----------~~~~~   69 (165)
T cd01864           4 FKIILIGDSNVGKTCVVQRFKSGTFSER--QGNTIGVDFTMKTLEI-EGKRVKLQIWDTAGQER-----------FRTIT   69 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCccc--CCCccceEEEEEEEEE-CCEEEEEEEEECCChHH-----------HHHHH
Confidence            6899999999999999999987543111  1111112222222333 33  3677999999432           11222


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH--------h-cCCCCcHHHHHHHHHhh---------HHHHHhhcc--chhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------A-NGGQPYTDEFLAELKRG---------ATELRDQQA--EVDSLKE  161 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~---------~~~l~~~~~--~i~~is~  161 (231)
                      ...+..+|++++++|+++..+.....        . ....|++ .+.+++|..         ...+.....  .++.+|+
T Consensus        70 ~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i-vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa  148 (165)
T cd01864          70 QSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLL-LIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSA  148 (165)
T ss_pred             HHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEE-EEEECcccccccccCHHHHHHHHHHcCCcEEEEEEC
Confidence            33446789999999998543322211        1 1122332 334444311         012322222  5677899


Q ss_pred             hhHhhHHHHHHHHHH
Q 038053          162 YSKQEISKLMGQMQE  176 (231)
Q Consensus       162 ~~~~~i~~l~~~i~~  176 (231)
                      .+|.|+.+++..+.+
T Consensus       149 ~~~~~v~~~~~~l~~  163 (165)
T cd01864         149 KESQNVEEAFLLMAT  163 (165)
T ss_pred             CCCCCHHHHHHHHHH
Confidence            999999998887764

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.25  E-value=4.7e-12  Score=99.60  Aligned_cols=83  Identities=12%  Similarity=0.054  Sum_probs=58.8

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee--EEeeCCcEEEEEe
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT--TVLKDGQVVNVID   79 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~l~D   79 (231)
                      ++.|+++.+++++++++++|  .+++|+|+||+|||||+++|+|...+    ..|.+........  .........++.+
T Consensus         7 ~~~~~~~~~l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~----~~G~i~~~g~~~~~~~~~~~~~i~~~~q   80 (201)
T cd03231           7 TCERDGRALFSGLSFTLAAG--EALQVTGPNGSGKTTLLRILAGLSPP----LAGRVLLNGGPLDFQRDSIARGLLYLGH   80 (201)
T ss_pred             EEEeCCceeeccceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CCcEEEECCEecccccHHhhhheEEecc
Confidence            56788888999999999999  99999999999999999999999873    3333332211100  0011345667788


Q ss_pred             CCCCcCCCCCc
Q 038053           80 TPGLFDSSAGS   90 (231)
Q Consensus        80 tpg~~~~~~~~   90 (231)
                      .+++++..+..
T Consensus        81 ~~~~~~~~tv~   91 (201)
T cd03231          81 APGIKTTLSVL   91 (201)
T ss_pred             ccccCCCcCHH
Confidence            88776654433

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.25  E-value=2.9e-12  Score=106.94  Aligned_cols=87  Identities=21%  Similarity=0.154  Sum_probs=63.9

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE--EeeCCcEEEEE
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT--VLKDGQVVNVI   78 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~l~   78 (231)
                      +++.|++..++++++|++++|  .+++|+|+||||||||+++|+|...+    +.|.+.........  .......++++
T Consensus         8 l~~~~~~~~~l~~is~~i~~G--ei~~l~G~NGaGKTTLl~~l~Gl~~~----~~G~i~i~g~~~~~~~~~~~~~ig~~~   81 (301)
T TIGR03522         8 LTKLYGTQNALDEVSFEAQKG--RIVGFLGPNGAGKSTTMKIITGYLPP----DSGSVQVCGEDVLQNPKEVQRNIGYLP   81 (301)
T ss_pred             EEEEECCEEEEEEeEEEEeCC--eEEEEECCCCCCHHHHHHHHhCCCCC----CceEEEECCEEcccChHHHHhceEEec
Confidence            367788889999999999999  99999999999999999999999873    44434332211100  00134578899


Q ss_pred             eCCCCcCCCCCchHH
Q 038053           79 DTPGLFDSSAGSEFV   93 (231)
Q Consensus        79 Dtpg~~~~~~~~~~~   93 (231)
                      +.|.+++..+..+.+
T Consensus        82 q~~~l~~~~tv~e~l   96 (301)
T TIGR03522        82 EHNPLYLDMYVREYL   96 (301)
T ss_pred             CCCCCCCCCcHHHHH
Confidence            999988766555443

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.25  E-value=3e-12  Score=108.73  Aligned_cols=88  Identities=20%  Similarity=0.257  Sum_probs=66.2

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-EEeeCCcEEEEEe
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-TVLKDGQVVNVID   79 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~D   79 (231)
                      +++.|++..+++++++++.+|  .+++|+|+||||||||+++|+|...+    +.|.+..+..... .........+++|
T Consensus        12 l~~~~~~~~~l~~isl~i~~G--e~~~llGpsGsGKSTLLr~IaGl~~p----~~G~I~~~g~~i~~~~~~~r~ig~vfQ   85 (351)
T PRK11432         12 ITKRFGSNTVIDNLNLTIKQG--TMVTLLGPSGCGKTTVLRLVAGLEKP----TEGQIFIDGEDVTHRSIQQRDICMVFQ   85 (351)
T ss_pred             EEEEECCeEEEeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHHCCCCC----CceEEEECCEECCCCCHHHCCEEEEeC
Confidence            356788888999999999999  99999999999999999999999984    4443333221110 0111356788999


Q ss_pred             CCCCcCCCCCchHHH
Q 038053           80 TPGLFDSSAGSEFVG   94 (231)
Q Consensus        80 tpg~~~~~~~~~~~~   94 (231)
                      .+.++++.++.+++.
T Consensus        86 ~~~lfp~~tv~eNi~  100 (351)
T PRK11432         86 SYALFPHMSLGENVG  100 (351)
T ss_pred             CcccCCCCCHHHHHH
Confidence            999999877766553

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.25  E-value=5.3e-12  Score=101.68  Aligned_cols=85  Identities=22%  Similarity=0.121  Sum_probs=60.0

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE----EeeCCcEEEE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT----VLKDGQVVNV   77 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~l   77 (231)
                      ++.|++..+++++++++.+|  .+++|+|+||||||||+++|+|...+    ..|.+.........    ........++
T Consensus         7 ~~~~~~~~~l~~vsl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~----~~G~i~~~g~~~~~~~~~~~~~~~i~~v   80 (236)
T cd03219           7 TKRFGGLVALDDVSFSVRPG--EIHGLIGPNGAGKTTLFNLISGFLRP----TSGSVLFDGEDITGLPPHEIARLGIGRT   80 (236)
T ss_pred             EEEECCEEEecCceEEecCC--cEEEEECCCCCCHHHHHHHHcCCCCC----CCceEEECCEECCCCCHHHHHhcCEEEE
Confidence            55677778999999999999  99999999999999999999999763    33333322211000    0002346778


Q ss_pred             EeCCCCcCCCCCchH
Q 038053           78 IDTPGLFDSSAGSEF   92 (231)
Q Consensus        78 ~Dtpg~~~~~~~~~~   92 (231)
                      ++.|.+++..+..+.
T Consensus        81 ~q~~~l~~~~tv~~~   95 (236)
T cd03219          81 FQIPRLFPELTVLEN   95 (236)
T ss_pred             ecccccccCCCHHHH
Confidence            899888876554433

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.25  E-value=5.6e-12  Score=102.29  Aligned_cols=87  Identities=22%  Similarity=0.212  Sum_probs=67.5

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeee----eeeEEeeCCcEEEE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCE----MKTTVLKDGQVVNV   77 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~----~~~~~~~~~~~~~l   77 (231)
                      ++.|+...+++++++.|++|  ..++|.|+||||||||+++|.|...+..|    .+.....    .........+.+++
T Consensus         9 ~~~~~~~~a~~di~l~i~~G--e~vaLlGpSGaGKsTlLRiIAGLe~p~~G----~I~~~~~~l~D~~~~~~~~R~VGfv   82 (345)
T COG1118           9 KKRFGAFGALDDISLDIKSG--ELVALLGPSGAGKSTLLRIIAGLETPDAG----RIRLNGRVLFDVSNLAVRDRKVGFV   82 (345)
T ss_pred             hhhcccccccccceeeecCC--cEEEEECCCCCcHHHHHHHHhCcCCCCCc----eEEECCEeccchhccchhhcceeEE
Confidence            67889999999999999999  99999999999999999999999985443    3332221    11112224678899


Q ss_pred             EeCCCCcCCCCCchHHH
Q 038053           78 IDTPGLFDSSAGSEFVG   94 (231)
Q Consensus        78 ~Dtpg~~~~~~~~~~~~   94 (231)
                      ++..-+++++++.+++.
T Consensus        83 FQ~YALF~HmtVa~NIA   99 (345)
T COG1118          83 FQHYALFPHMTVADNIA   99 (345)
T ss_pred             EechhhcccchHHhhhh
Confidence            99999999888776654

>cd01862 Rab7 Rab7 subfamily

Probab=99.25  E-value=3.8e-11  Score=91.48  Aligned_cols=139  Identities=14%  Similarity=0.141  Sum_probs=78.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      +|+++|++|||||||+|++++......  ..+....+........ .+  ..+.++|+||...           +.....
T Consensus         2 ki~viG~~~~GKSsl~~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~-----------~~~~~~   67 (172)
T cd01862           2 KVIILGDSGVGKTSLMNQYVNKKFSNQ--YKATIGADFLTKEVTV-DDKLVTLQIWDTAGQER-----------FQSLGV   67 (172)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCcC--cCCccceEEEEEEEEE-CCEEEEEEEEeCCChHH-----------HHhHHH
Confidence            799999999999999999998764211  1111121111112222 33  3456899999543           111122


Q ss_pred             hhcCCccEEEEEEECCCCCCHHHHH--------h-----cCCCCcHHHHHHHHHhh------H---HHHHhhc--cchhh
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEEEA--------A-----NGGQPYTDEFLAELKRG------A---TELRDQQ--AEVDS  158 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~~~--------~-----~~~~~~~~~~~~~~~~~------~---~~l~~~~--~~i~~  158 (231)
                      ..+..+|++++++|+.+.-+.....        .     ....|++ .+.++.|..      .   ..+.+..  .+++.
T Consensus        68 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  146 (172)
T cd01862          68 AFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFV-VLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFE  146 (172)
T ss_pred             HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEE-EEEECcccccccccCHHHHHHHHHHcCCceEEE
Confidence            3347789999999997543322111        0     0123333 233333311      0   1222222  26777


Q ss_pred             hhhhhHhhHHHHHHHHHHHH
Q 038053          159 LKEYSKQEISKLMGQMQESY  178 (231)
Q Consensus       159 is~~~~~~i~~l~~~i~~~~  178 (231)
                      +|+.+|.|++.++..+....
T Consensus       147 ~Sa~~~~gv~~l~~~i~~~~  166 (172)
T cd01862         147 TSAKEAINVEQAFETIARKA  166 (172)
T ss_pred             EECCCCCCHHHHHHHHHHHH
Confidence            89999999999988877653

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.25  E-value=5.6e-12  Score=102.03  Aligned_cols=83  Identities=12%  Similarity=0.023  Sum_probs=58.7

Q ss_pred             CCCCCC-CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eE-----EeeCCc
Q 038053            1 MSSGMG-ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TT-----VLKDGQ   73 (231)
Q Consensus         1 ~~~~~~-~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~-----~~~~~~   73 (231)
                      +++.|+ +..++++++|++.+|  .+++|+|+||||||||+++|+|...+    ..|.+....... ..     ......
T Consensus         7 l~~~~~~~~~il~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~----~~G~i~~~g~~~~~~~~~~~~~~~~~   80 (243)
T TIGR02315         7 LSKVYPNGKQALKNINLNINPG--EFVAIIGPSGAGKSTLLRCINRLVEP----SSGSILLEGTDITKLRGKKLRKLRRR   80 (243)
T ss_pred             eeeecCCCcceeecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCcCC----CccEEEECCEEhhhCCHHHHHHHHhh
Confidence            356777 778999999999999  99999999999999999999999863    333333222110 00     000234


Q ss_pred             EEEEEeCCCCcCCCCC
Q 038053           74 VVNVIDTPGLFDSSAG   89 (231)
Q Consensus        74 ~~~l~Dtpg~~~~~~~   89 (231)
                      ..++++.|.+++..+.
T Consensus        81 i~~v~q~~~~~~~~tv   96 (243)
T TIGR02315        81 IGMIFQHYNLIERLTV   96 (243)
T ss_pred             eEEEcCCCcccccccH
Confidence            6778888887764443

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.25  E-value=3.6e-12  Score=102.97  Aligned_cols=85  Identities=18%  Similarity=0.064  Sum_probs=59.9

Q ss_pred             CCCCCC-cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eE-----EeeCCcE
Q 038053            2 SSGMGE-RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TT-----VLKDGQV   74 (231)
Q Consensus         2 ~~~~~~-~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~-----~~~~~~~   74 (231)
                      ++.|++ +.++++++|++.+|  .+++|+|+||||||||+++|+|...+    ..|.+....... ..     .......
T Consensus         7 ~~~~~~~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~----~~G~i~~~g~~~~~~~~~~~~~~~~~i   80 (241)
T cd03256           7 SKTYPNGKKALKDVSLSINPG--EFVALIGPSGAGKSTLLRCLNGLVEP----TSGSVLIDGTDINKLKGKALRQLRRQI   80 (241)
T ss_pred             EEecCCccEEEecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCcCC----CCceEEECCEeccccCHhHHHHHHhcc
Confidence            567776 78999999999999  99999999999999999999999863    334333322110 00     0002346


Q ss_pred             EEEEeCCCCcCCCCCchH
Q 038053           75 VNVIDTPGLFDSSAGSEF   92 (231)
Q Consensus        75 ~~l~Dtpg~~~~~~~~~~   92 (231)
                      .++++.+.+++..+..++
T Consensus        81 ~~~~q~~~~~~~~tv~~~   98 (241)
T cd03256          81 GMIFQQFNLIERLSVLEN   98 (241)
T ss_pred             EEEcccCcccccCcHHHH
Confidence            778888887765544433

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd04149 Arf6 Arf6 subfamily

Probab=99.25  E-value=2.9e-11  Score=92.41  Aligned_cols=134  Identities=14%  Similarity=0.092  Sum_probs=78.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+++|.+|||||||++.+........   .+  |.......... ....+.+.||||...           +......
T Consensus        10 ~kv~i~G~~~~GKTsli~~l~~~~~~~~---~~--t~g~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~~~~~   72 (168)
T cd04149          10 MRILMLGLDAAGKTTILYKLKLGQSVTT---IP--TVGFNVETVTY-KNVKFNVWDVGGQDK-----------IRPLWRH   72 (168)
T ss_pred             cEEEEECcCCCCHHHHHHHHccCCCccc---cC--CcccceEEEEE-CCEEEEEEECCCCHH-----------HHHHHHH
Confidence            6899999999999999999986543211   11  11111222222 567789999999753           1111223


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH------h----cCCCCcHHHHHHHHHhh----HHHHHhhc-----c----chhhhh
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA------A----NGGQPYTDEFLAELKRG----ATELRDQQ-----A----EVDSLK  160 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~------~----~~~~~~~~~~~~~~~~~----~~~l~~~~-----~----~i~~is  160 (231)
                      .+..+|++++|+|+++..+.....      .    ....|++ .+.++.|..    .+++...+     .    .+..+|
T Consensus        73 ~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~pii-lv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S  151 (168)
T cd04149          73 YYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLL-VFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSC  151 (168)
T ss_pred             HhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEE-EEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEee
Confidence            456789999999998542222111      1    1123333 344554311    12332221     1    456789


Q ss_pred             hhhHhhHHHHHHHHH
Q 038053          161 EYSKQEISKLMGQMQ  175 (231)
Q Consensus       161 ~~~~~~i~~l~~~i~  175 (231)
                      |++|.|+.+++..+.
T Consensus       152 Ak~g~gv~~~~~~l~  166 (168)
T cd04149         152 ATSGDGLYEGLTWLS  166 (168)
T ss_pred             CCCCCChHHHHHHHh
Confidence            999999999887664

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.24  E-value=3.3e-11  Score=109.08  Aligned_cols=142  Identities=19%  Similarity=0.240  Sum_probs=90.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccc-cCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKAS-ADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      +|+++|..++|||||+++|+|....... ....+.|.+..........+..+.++||||..           .+...+..
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe-----------~fi~~m~~   70 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHE-----------KFLSNMLA   70 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHH-----------HHHHHHHH
Confidence            6999999999999999999986421110 12346676554444433345678899999953           23333334


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhhH--------HHHHhhc-------cchhhhhhhh
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRGA--------TELRDQQ-------AEVDSLKEYS  163 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~--------~~l~~~~-------~~i~~is~~~  163 (231)
                      ....+|.+++|+|+..++......     ...+.+..+.++|++|...        .++.+.+       .+++++|+.+
T Consensus        71 g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~t  150 (614)
T PRK10512         71 GVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATE  150 (614)
T ss_pred             HhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCC
Confidence            457789999999998777666544     2222333223444443210        2233222       2678899999


Q ss_pred             HhhHHHHHHHHHHH
Q 038053          164 KQEISKLMGQMQES  177 (231)
Q Consensus       164 ~~~i~~l~~~i~~~  177 (231)
                      |.|++.|++.+...
T Consensus       151 G~gI~~L~~~L~~~  164 (614)
T PRK10512        151 GRGIDALREHLLQL  164 (614)
T ss_pred             CCCCHHHHHHHHHh
Confidence            99999998887653

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.24  E-value=7.5e-11  Score=101.50  Aligned_cols=89  Identities=19%  Similarity=0.165  Sum_probs=63.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEe-----------------------eCCcEEEEEeC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVL-----------------------KDGQVVNVIDT   80 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-----------------------~~~~~~~l~Dt   80 (231)
                      ..|+|||.||+|||||||+|++.....  ...+++|.++..+....                       .....+.++|+
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~--~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~   79 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEI--ANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDV   79 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccc--cCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEc
Confidence            579999999999999999999986532  24566676666544321                       01234679999


Q ss_pred             CCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECC
Q 038053           81 PGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVR  118 (231)
Q Consensus        81 pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~  118 (231)
                      ||+..+......++..++..+    ..+|++++|+|+.
T Consensus        80 aGl~~ga~~g~glg~~fL~~i----r~ad~ll~Vvd~~  113 (396)
T PRK09602         80 AGLVPGAHEGRGLGNQFLDDL----RQADALIHVVDAS  113 (396)
T ss_pred             CCcCCCccchhhHHHHHHHHH----HHCCEEEEEEeCC
Confidence            999876554445555555444    5669999999996

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.24  E-value=1.6e-10  Score=95.14  Aligned_cols=143  Identities=22%  Similarity=0.325  Sum_probs=75.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCccccccC------CCCcceeeeeeeEEee-C--CcEEEEEeCCCCcCCCCCchHH
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKAFKASAD------SSGVTKTCEMKTTVLK-D--GQVVNVIDTPGLFDSSAGSEFV   93 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~------~~~~t~~~~~~~~~~~-~--~~~~~l~Dtpg~~~~~~~~~~~   93 (231)
                      .++|.++|.+|+|||||+|.|++.........      ....+........... .  ...+.++||||+.+..... ..
T Consensus         4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~-~~   82 (281)
T PF00735_consen    4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNS-DC   82 (281)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHC-HH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccch-hh
Confidence            47899999999999999999999865433100      0001111111111111 2  3467899999998744321 22


Q ss_pred             HHHHHHHHhhh-----------------cCCccEEEEEEECCCCCCHHHHHhcCCCCcHHHHHHHHHhhHHHHHhhccch
Q 038053           94 GKEIVKRIGLA-----------------KGGIHAVLVVFSVRSRFSQEEEAANGGQPYTDEFLAELKRGATELRDQQAEV  156 (231)
Q Consensus        94 ~~~~~~~~~~~-----------------~~~~~~il~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i  156 (231)
                      ...+..++...                 -.++|++|++++++         ..+..+.-+..   +.    .|..+++.|
T Consensus        83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt---------~~~L~~~Di~~---mk----~Ls~~vNvI  146 (281)
T PF00735_consen   83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPT---------GHGLKPLDIEF---MK----RLSKRVNVI  146 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TT---------SSSS-HHHHHH---HH----HHTTTSEEE
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCC---------CccchHHHHHH---HH----HhcccccEE
Confidence            22222222111                 14779999999997         22333332333   44    566666633


Q ss_pred             hh---hhhhhHhhHHHHHHHHHHHHHHHH
Q 038053          157 DS---LKEYSKQEISKLMGQMQESYEDQI  182 (231)
Q Consensus       157 ~~---is~~~~~~i~~l~~~i~~~~~~~~  182 (231)
                      ..   -+.++...+..++..+...++++.
T Consensus       147 PvIaKaD~lt~~el~~~k~~i~~~l~~~~  175 (281)
T PF00735_consen  147 PVIAKADTLTPEELQAFKQRIREDLEENN  175 (281)
T ss_dssp             EEESTGGGS-HHHHHHHHHHHHHHHHHTT
T ss_pred             eEEecccccCHHHHHHHHHHHHHHHHHcC
Confidence            22   334677888888877777665443

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.24  E-value=5.7e-12  Score=102.40  Aligned_cols=86  Identities=14%  Similarity=0.059  Sum_probs=60.4

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE-----------Eee
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT-----------VLK   70 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~-----------~~~   70 (231)
                      ++.|+++.++++++|++.+|  .+++|+|+||||||||+++|+|...+    ..|.+.........           ...
T Consensus        10 ~~~~~~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~----~~G~i~~~g~~~~~~~~~~~~~~~~~~~   83 (250)
T PRK11264         10 VKKFHGQTVLHGIDLEVKPG--EVVAIIGPSGSGKTTLLRCINLLEQP----EAGTIRVGDITIDTARSLSQQKGLIRQL   83 (250)
T ss_pred             EEEECCeeeeccceEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCC----CCeEEEECCEEccccccccchhhHHHHh
Confidence            56788788999999999999  99999999999999999999999763    33333222111000           001


Q ss_pred             CCcEEEEEeCCCCcCCCCCchHH
Q 038053           71 DGQVVNVIDTPGLFDSSAGSEFV   93 (231)
Q Consensus        71 ~~~~~~l~Dtpg~~~~~~~~~~~   93 (231)
                      .....++++.|.+++..+..+++
T Consensus        84 ~~~i~~v~q~~~~~~~~tv~e~l  106 (250)
T PRK11264         84 RQHVGFVFQNFNLFPHRTVLENI  106 (250)
T ss_pred             hhhEEEEecCcccCCCCCHHHHH
Confidence            23567888888887655544433

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.24  E-value=9.1e-12  Score=99.76  Aligned_cols=82  Identities=20%  Similarity=0.157  Sum_probs=56.9

Q ss_pred             CCCCCCc----ccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eE-----EeeC
Q 038053            2 SSGMGER----VIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TT-----VLKD   71 (231)
Q Consensus         2 ~~~~~~~----~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~-----~~~~   71 (231)
                      ++.|++.    .+++++++++++|  .+++|+|+||||||||+++|+|...+    ..|.+....... ..     ....
T Consensus         8 ~~~~~~~~~~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~----~~G~i~~~g~~~~~~~~~~~~~~~   81 (228)
T cd03257           8 SVSFPTGGGSVKALDDVSFSIKKG--ETLGLVGESGSGKSTLARAILGLLKP----TSGSIIFDGKDLLKLSRRLRKIRR   81 (228)
T ss_pred             eEeccCCCcceeeecCceeEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CCceEEECCEEccccchhhHHHhh
Confidence            5667655    7999999999999  99999999999999999999999873    344333322111 00     0113


Q ss_pred             CcEEEEEeCCC--CcCCCCC
Q 038053           72 GQVVNVIDTPG--LFDSSAG   89 (231)
Q Consensus        72 ~~~~~l~Dtpg--~~~~~~~   89 (231)
                      ....++++.|.  +++..+.
T Consensus        82 ~~i~~~~q~~~~~~~~~~tv  101 (228)
T cd03257          82 KEIQMVFQDPMSSLNPRMTI  101 (228)
T ss_pred             ccEEEEecCchhhcCCcCCH
Confidence            45677888883  4443443

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>cd04122 Rab14 Rab14 subfamily

Probab=99.24  E-value=4.3e-11  Score=91.00  Aligned_cols=136  Identities=14%  Similarity=0.135  Sum_probs=76.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeee--eeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEM--KTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVK   99 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~   99 (231)
                      .+|+++|.+|+|||||++.+++..-.    .....|.....  ..... .+  ..+.+.||||...           +..
T Consensus         3 ~ki~iiG~~~vGKTsli~~~~~~~~~----~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~   66 (166)
T cd04122           3 FKYIIIGDMGVGKSCLLHQFTEKKFM----ADCPHTIGVEFGTRIIEV-NGQKIKLQIWDTAGQER-----------FRA   66 (166)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCC----CCCCcccceeEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHH
Confidence            58999999999999999999877431    11122221111  11222 22  3567899999532           111


Q ss_pred             HHhhhcCCccEEEEEEECCCCCCHHHHH--------h-cCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhh
Q 038053          100 RIGLAKGGIHAVLVVFSVRSRFSQEEEA--------A-NGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLK  160 (231)
Q Consensus       100 ~~~~~~~~~~~il~vvd~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is  160 (231)
                      .....+..+|++++|+|+++.-+.....        . ....|++ .+.++.|..         ...+....+ +++.+|
T Consensus        67 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~ii-iv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S  145 (166)
T cd04122          67 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIF-LIGNKADLEAQRDVTYEEAKQFADENGLLFLECS  145 (166)
T ss_pred             HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEE-EEEECcccccccCcCHHHHHHHHHHcCCEEEEEE
Confidence            1223446889999999998543322221        1 1122222 233333210         011211122 567789


Q ss_pred             hhhHhhHHHHHHHHHH
Q 038053          161 EYSKQEISKLMGQMQE  176 (231)
Q Consensus       161 ~~~~~~i~~l~~~i~~  176 (231)
                      +++|.|+.+++..+..
T Consensus       146 a~~~~~i~e~f~~l~~  161 (166)
T cd04122         146 AKTGENVEDAFLETAK  161 (166)
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            9999999998777654

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.24  E-value=4.6e-12  Score=102.42  Aligned_cols=84  Identities=19%  Similarity=0.163  Sum_probs=59.6

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE----EeeCCcEEE
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT----VLKDGQVVN   76 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~   76 (231)
                      +++.|+++.++++++|++++|  .+++|+|+||||||||+++|+|...+    ..|.++........    ........+
T Consensus         9 l~~~~~~~~~l~~~sl~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~----~~G~i~~~g~~~~~~~~~~~~~~~i~~   82 (241)
T PRK10895          9 LAKAYKGRRVVEDVSLTVNSG--EIVGLLGPNGAGKTTTFYMVVGIVPR----DAGNIIIDDEDISLLPLHARARRGIGY   82 (241)
T ss_pred             cEEEeCCEEEEeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCC----CCcEEEECCEECCCCCHHHHHHhCeEE
Confidence            356788888999999999999  99999999999999999999999873    34433332211000    000234677


Q ss_pred             EEeCCCCcCCCCCc
Q 038053           77 VIDTPGLFDSSAGS   90 (231)
Q Consensus        77 l~Dtpg~~~~~~~~   90 (231)
                      +++.|.+++..+..
T Consensus        83 ~~q~~~~~~~~tv~   96 (241)
T PRK10895         83 LPQEASIFRRLSVY   96 (241)
T ss_pred             eccCCcccccCcHH
Confidence            88888777654433

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.23  E-value=1.9e-11  Score=92.99  Aligned_cols=46  Identities=20%  Similarity=0.156  Sum_probs=42.8

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF   49 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~   49 (231)
                      ++.|++.+++++++|++++|  .+++|+|+||+|||||+++|+|...+
T Consensus         7 ~~~~~~~~vl~~i~~~i~~G--e~~~l~G~nGsGKSTLl~~i~G~~~~   52 (163)
T cd03216           7 TKRFGGVKALDGVSLSVRRG--EVHALLGENGAGKSTLMKILSGLYKP   52 (163)
T ss_pred             EEEECCeEEEeeeEEEEeCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            56788888999999999999  99999999999999999999999873

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.23  E-value=2.8e-11  Score=93.11  Aligned_cols=45  Identities=13%  Similarity=0.204  Sum_probs=41.2

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      +++.|++..++++. +.+++|  .+++|+|+||||||||+++|+|...
T Consensus         6 l~~~~~~~~~l~~~-~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~   50 (177)
T cd03222           6 CVKRYGVFFLLVEL-GVVKEG--EVIGIVGPNGTGKTTAVKILAGQLI   50 (177)
T ss_pred             eEEEECCEEEEccC-cEECCC--CEEEEECCCCChHHHHHHHHHcCCC
Confidence            46788988899884 899999  9999999999999999999999987

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.23  E-value=2e-10  Score=95.45  Aligned_cols=147  Identities=22%  Similarity=0.289  Sum_probs=83.8

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccc---cCCC---CcceeeeeeeEEee-C--CcEEEEEeCCCCcCCCC
Q 038053           18 SSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKAS---ADSS---GVTKTCEMKTTVLK-D--GQVVNVIDTPGLFDSSA   88 (231)
Q Consensus        18 i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~---~~~~---~~t~~~~~~~~~~~-~--~~~~~l~Dtpg~~~~~~   88 (231)
                      ...|-.++|.++|++|.||||++|.|++.......   ...+   ..|........... .  ...+.++|||||.+...
T Consensus        18 ~k~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~id   97 (373)
T COG5019          18 SKKGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFID   97 (373)
T ss_pred             HhcCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccc
Confidence            44677799999999999999999999998432110   0111   12222222222221 1  34678999999987543


Q ss_pred             CchHHHHHHHHHHhh----h--------------cCCccEEEEEEECCCCCCHHHHHhcCCCCcHHHHHHHHHhhHHHHH
Q 038053           89 GSEFVGKEIVKRIGL----A--------------KGGIHAVLVVFSVRSRFSQEEEAANGGQPYTDEFLAELKRGATELR  150 (231)
Q Consensus        89 ~~~~~~~~~~~~~~~----~--------------~~~~~~il~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  150 (231)
                      - ......+..++..    .              -.++|++|+++.++         ..+..++-+.+   |.    .|.
T Consensus        98 N-s~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Pt---------gh~l~~~DIe~---Mk----~ls  160 (373)
T COG5019          98 N-SKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPT---------GHGLKPLDIEA---MK----RLS  160 (373)
T ss_pred             c-cccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCC---------CCCCCHHHHHH---HH----HHh
Confidence            2 2222222222211    1              25789999999997         34444444333   33    444


Q ss_pred             hhcc--c-hhhhhhhhHhhHHHHHHHHHHHHHHH
Q 038053          151 DQQA--E-VDSLKEYSKQEISKLMGQMQESYEDQ  181 (231)
Q Consensus       151 ~~~~--~-i~~is~~~~~~i~~l~~~i~~~~~~~  181 (231)
                      ..++  | |..-+.++...+..+++.+.+.++.+
T Consensus       161 ~~vNlIPVI~KaD~lT~~El~~~K~~I~~~i~~~  194 (373)
T COG5019         161 KRVNLIPVIAKADTLTDDELAEFKERIREDLEQY  194 (373)
T ss_pred             cccCeeeeeeccccCCHHHHHHHHHHHHHHHHHh
Confidence            4555  2 22233467777777777776665544

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.23  E-value=4.2e-12  Score=108.11  Aligned_cols=87  Identities=16%  Similarity=0.172  Sum_probs=64.9

Q ss_pred             CCCC-CCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEEeeCCcEEEEEe
Q 038053            2 SSGM-GERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTVLKDGQVVNVID   79 (231)
Q Consensus         2 ~~~~-~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~D   79 (231)
                      ++.| ++..++++++|++++|  ..++|+|+||||||||+++|+|...+    ..|.+....... ..........++++
T Consensus        10 ~~~~~~~~~~l~~vsl~i~~G--e~~~llG~sGsGKSTLLr~iaGl~~p----~~G~I~~~g~~i~~~~~~~r~ig~v~Q   83 (356)
T PRK11650         10 RKSYDGKTQVIKGIDLDVADG--EFIVLVGPSGCGKSTLLRMVAGLERI----TSGEIWIGGRVVNELEPADRDIAMVFQ   83 (356)
T ss_pred             EEEeCCCCEEEeeeeEEEcCC--CEEEEECCCCCcHHHHHHHHHCCCCC----CceEEEECCEECCCCCHHHCCEEEEeC
Confidence            5678 7788999999999999  99999999999999999999999873    344333322111 00011346788999


Q ss_pred             CCCCcCCCCCchHHH
Q 038053           80 TPGLFDSSAGSEFVG   94 (231)
Q Consensus        80 tpg~~~~~~~~~~~~   94 (231)
                      .+.+++..++.+++.
T Consensus        84 ~~~lfp~~tv~eNi~   98 (356)
T PRK11650         84 NYALYPHMSVRENMA   98 (356)
T ss_pred             CccccCCCCHHHHHH
Confidence            999998877766553

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.23  E-value=6.9e-12  Score=98.95  Aligned_cols=84  Identities=21%  Similarity=0.269  Sum_probs=59.9

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-EE------eeCCcE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-TV------LKDGQV   74 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-~~------~~~~~~   74 (231)
                      ++.|+++.++++++|++.+|  .+++|+|+||+|||||+++|+|...+    ..|.+........ ..      ......
T Consensus         5 ~~~~~~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~----~~G~i~~~g~~~~~~~~~~~~~~~~~~i   78 (206)
T TIGR03608         5 SKKFGDKIILDDLNLTIEKG--KMYAIIGESGSGKSTLLNIIGLLEKF----DSGQVYLNGKETPPLNSKKASKFRREKL   78 (206)
T ss_pred             EEEECCEEEEeceEEEEeCC--cEEEEECCCCCCHHHHHHHHhcCCCC----CCeEEEECCEEccccchhhHHHHHHhCe
Confidence            56788888999999999999  99999999999999999999999873    3333332221100 00      012356


Q ss_pred             EEEEeCCCCcCCCCCch
Q 038053           75 VNVIDTPGLFDSSAGSE   91 (231)
Q Consensus        75 ~~l~Dtpg~~~~~~~~~   91 (231)
                      .++.+.|.+++..+..+
T Consensus        79 ~~~~q~~~~~~~~t~~e   95 (206)
T TIGR03608        79 GYLFQNFALIENETVEE   95 (206)
T ss_pred             eEEecchhhccCCcHHH
Confidence            77888888877555443

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd04127 Rab27A Rab27a subfamily

Probab=99.23  E-value=1.1e-10  Score=89.90  Aligned_cols=140  Identities=14%  Similarity=0.034  Sum_probs=79.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEe-----------eCCcEEEEEeCCCCcCCCCCchH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVL-----------KDGQVVNVIDTPGLFDSSAGSEF   92 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-----------~~~~~~~l~Dtpg~~~~~~~~~~   92 (231)
                      .+|+++|++|||||||++.+++......  ..+....+........           .....+.++||||...       
T Consensus         5 ~ki~ivG~~~vGKTsli~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------   75 (180)
T cd04127           5 IKFLALGDSGVGKTSFLYQYTDNKFNPK--FITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQER-------   75 (180)
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCcc--CCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHH-------
Confidence            6899999999999999999988653111  1111111111111111           0235677999999332       


Q ss_pred             HHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH--------h--cCCCCcHHHHHHHHHhh---------HHHHHhhc
Q 038053           93 VGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA--------A--NGGQPYTDEFLAELKRG---------ATELRDQQ  153 (231)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~--------~--~~~~~~~~~~~~~~~~~---------~~~l~~~~  153 (231)
                          +.......+..+|++++|+|+++.-+..+..        .  ....|++ .+.++.|..         ...+....
T Consensus        76 ----~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-iv~nK~Dl~~~~~v~~~~~~~~~~~~  150 (180)
T cd04127          76 ----FRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIV-LCGNKADLEDQRQVSEEQAKALADKY  150 (180)
T ss_pred             ----HHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE-EEEeCccchhcCccCHHHHHHHHHHc
Confidence                2222333457889999999998533322221        1  1122333 233443311         01222222


Q ss_pred             c-chhhhhhhhHhhHHHHHHHHHHH
Q 038053          154 A-EVDSLKEYSKQEISKLMGQMQES  177 (231)
Q Consensus       154 ~-~i~~is~~~~~~i~~l~~~i~~~  177 (231)
                      + +++.+|+++|.|+++++..+...
T Consensus       151 ~~~~~e~Sak~~~~v~~l~~~l~~~  175 (180)
T cd04127         151 GIPYFETSAATGTNVEKAVERLLDL  175 (180)
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            2 67789999999999998887653

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.23  E-value=7e-12  Score=101.42  Aligned_cols=86  Identities=21%  Similarity=0.184  Sum_probs=60.5

Q ss_pred             CCCCCC-cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee---EEeeCCcEEEE
Q 038053            2 SSGMGE-RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT---TVLKDGQVVNV   77 (231)
Q Consensus         2 ~~~~~~-~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~l   77 (231)
                      ++.|++ ..+++++++++.+|  .+++|+|+||+|||||+++|+|...+    ..|.+........   .........++
T Consensus         7 ~~~~~~~~~~l~~is~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~----~~G~i~~~g~~~~~~~~~~~~~~i~~~   80 (242)
T cd03295           7 TKRYGGGKKAVNNLNLEIAKG--EFLVLIGPSGSGKTTTMKMINRLIEP----TSGEIFIDGEDIREQDPVELRRKIGYV   80 (242)
T ss_pred             EEEeCCcceEeeeeEEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCC----CCceEEECCeEcCcCChHHhhcceEEE
Confidence            566777 78999999999999  99999999999999999999999773    3333332221100   00012356788


Q ss_pred             EeCCCCcCCCCCchHH
Q 038053           78 IDTPGLFDSSAGSEFV   93 (231)
Q Consensus        78 ~Dtpg~~~~~~~~~~~   93 (231)
                      ++.|.+++..+..+++
T Consensus        81 ~q~~~~~~~~tv~e~l   96 (242)
T cd03295          81 IQQIGLFPHMTVEENI   96 (242)
T ss_pred             ccCccccCCCcHHHHH
Confidence            8988888755544443

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.23  E-value=4.3e-12  Score=99.73  Aligned_cols=85  Identities=13%  Similarity=0.006  Sum_probs=59.5

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee--EEeeCCcEEEEEe
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT--TVLKDGQVVNVID   79 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~l~D   79 (231)
                      ++.|++.++++++++++.+|  .+++|+|+||+|||||+++|+|...+    ..|.++.......  .........++.+
T Consensus         8 ~~~~~~~~il~~~s~~i~~G--e~~~l~G~nGsGKSTLl~~i~G~~~~----~~G~v~~~g~~~~~~~~~~~~~i~~~~q   81 (200)
T PRK13540          8 DFDYHDQPLLQQISFHLPAG--GLLHLKGSNGAGKTTLLKLIAGLLNP----EKGEILFERQSIKKDLCTYQKQLCFVGH   81 (200)
T ss_pred             EEEeCCeeEEeeeeEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCC----CCeeEEECCCccccCHHHHHhheEEecc
Confidence            56788888999999999999  99999999999999999999999873    3333332211100  0001234667788


Q ss_pred             CCCCcCCCCCchH
Q 038053           80 TPGLFDSSAGSEF   92 (231)
Q Consensus        80 tpg~~~~~~~~~~   92 (231)
                      .+.+++..+..++
T Consensus        82 ~~~~~~~~tv~~~   94 (200)
T PRK13540         82 RSGINPYLTLREN   94 (200)
T ss_pred             ccccCcCCCHHHH
Confidence            7777665444433

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.23  E-value=5.2e-12  Score=100.21  Aligned_cols=75  Identities=16%  Similarity=0.140  Sum_probs=55.2

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeC
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDT   80 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dt   80 (231)
                      +++.|++..+++++++++++|  .+++|+|+||||||||+++|+|...+    ..|.++....... .. .....++++.
T Consensus         5 l~~~~~~~~~l~~isl~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~p----~~G~i~~~g~~~~-~~-~~~i~~v~q~   76 (213)
T cd03235           5 LTVSYGGHPVLEDVSFEVKPG--EFLAIVGPNGAGKSTLLKAILGLLKP----TSGSIRVFGKPLE-KE-RKRIGYVPQR   76 (213)
T ss_pred             ceeEECCEEeeecceeEEcCC--CEEEEECCCCCCHHHHHHHHcCCCCC----CCCEEEECCccHH-HH-HhheEEeccc
Confidence            356788788999999999999  99999999999999999999999763    3443332211000 11 2346777887


Q ss_pred             CCC
Q 038053           81 PGL   83 (231)
Q Consensus        81 pg~   83 (231)
                      |.+
T Consensus        77 ~~~   79 (213)
T cd03235          77 RSI   79 (213)
T ss_pred             ccc
Confidence            765

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.23  E-value=8.9e-12  Score=98.29  Aligned_cols=50  Identities=24%  Similarity=0.159  Sum_probs=44.3

Q ss_pred             CCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcce
Q 038053            5 MGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTK   60 (231)
Q Consensus         5 ~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~   60 (231)
                      +...++|+|++|++.+|  .+|||||+||||||||++.|+|...    |+.|.+++
T Consensus        37 ~~~~~aL~disf~i~~G--e~vGiiG~NGaGKSTLlkliaGi~~----Pt~G~v~v   86 (249)
T COG1134          37 VAEFWALKDISFEIYKG--ERVGIIGHNGAGKSTLLKLIAGIYK----PTSGKVKV   86 (249)
T ss_pred             cceEEEecCceEEEeCC--CEEEEECCCCCcHHHHHHHHhCccC----CCCceEEE
Confidence            45678999999999999  9999999999999999999999998    55665554

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.23  E-value=2e-10  Score=87.22  Aligned_cols=139  Identities=17%  Similarity=0.147  Sum_probs=79.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+++|++|||||||++.+++......  ..++.+.+........ .+  ..+.++||||...           +....
T Consensus         3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~-----------~~~~~   68 (166)
T cd01869           3 FKLLLIGDSGVGKSCLLLRFADDTYTES--YISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQER-----------FRTIT   68 (166)
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEEEE-CCEEEEEEEEECCCcHh-----------HHHHH
Confidence            5899999999999999999998654211  1222222222222222 22  3567899999543           11112


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH--------hc-CCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------AN-GGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKEY  162 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~~  162 (231)
                      ...+..+|++++|+|+++.-+.....        .. ...|++ .+.++.|..         ...+....+ +++.+|+.
T Consensus        69 ~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~i-iv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  147 (166)
T cd01869          69 SSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKL-LVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAK  147 (166)
T ss_pred             HHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEE-EEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECC
Confidence            23346789999999998532222111        11 223333 233433310         012222222 67789999


Q ss_pred             hHhhHHHHHHHHHHH
Q 038053          163 SKQEISKLMGQMQES  177 (231)
Q Consensus       163 ~~~~i~~l~~~i~~~  177 (231)
                      +|.|+.+++..+...
T Consensus       148 ~~~~v~~~~~~i~~~  162 (166)
T cd01869         148 NATNVEQAFMTMARE  162 (166)
T ss_pred             CCcCHHHHHHHHHHH
Confidence            999999998887654

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.22  E-value=9.3e-12  Score=99.47  Aligned_cols=83  Identities=23%  Similarity=0.217  Sum_probs=58.4

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCC
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTP   81 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtp   81 (231)
                      ++.|++++++++++|++.+|  .+++|+|+||+|||||+++|+|...+    ..|.+........... .....++++.+
T Consensus         7 ~~~~~~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~----~~G~i~~~~~~~~~~~-~~~~~~~~q~~   79 (223)
T TIGR03740         7 SKRFGKQTAVNNISLTVPKN--SVYGLLGPNGAGKSTLLKMITGILRP----TSGEIIFDGHPWTRKD-LHKIGSLIESP   79 (223)
T ss_pred             EEEECCEEEEeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCC----CceEEEECCEeccccc-cccEEEEcCCC
Confidence            46777788999999999999  99999999999999999999999763    3343332221100000 12456778888


Q ss_pred             CCcCCCCCch
Q 038053           82 GLFDSSAGSE   91 (231)
Q Consensus        82 g~~~~~~~~~   91 (231)
                      .+++..+..+
T Consensus        80 ~~~~~~t~~~   89 (223)
T TIGR03740        80 PLYENLTARE   89 (223)
T ss_pred             CccccCCHHH
Confidence            7776544433

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.22  E-value=5.9e-12  Score=101.74  Aligned_cols=85  Identities=19%  Similarity=0.129  Sum_probs=60.2

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE-----EeeCCcEEE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT-----VLKDGQVVN   76 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~-----~~~~~~~~~   76 (231)
                      +++|+++.++++++|++.+|  .+++|+|+||+|||||+++|+|...+    ..|.+.........     ........+
T Consensus         8 ~~~~~~~~il~~~s~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~----~~G~i~~~g~~~~~~~~~~~~~~~~i~~   81 (240)
T PRK09493          8 SKHFGPTQVLHNIDLNIDQG--EVVVIIGPSGSGKSTLLRCINKLEEI----TSGDLIVDGLKVNDPKVDERLIRQEAGM   81 (240)
T ss_pred             EEEECCeEEeeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCC----CceEEEECCEECCcCChhHHHHhhceEE
Confidence            56777788999999999999  99999999999999999999999763    33433332211000     011234677


Q ss_pred             EEeCCCCcCCCCCchH
Q 038053           77 VIDTPGLFDSSAGSEF   92 (231)
Q Consensus        77 l~Dtpg~~~~~~~~~~   92 (231)
                      +++.+.+++..+..++
T Consensus        82 ~~q~~~~~~~~tv~~~   97 (240)
T PRK09493         82 VFQQFYLFPHLTALEN   97 (240)
T ss_pred             EecccccCCCCcHHHH
Confidence            8888888765544433

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.22  E-value=5.7e-12  Score=99.61  Aligned_cols=82  Identities=15%  Similarity=0.041  Sum_probs=56.0

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCC
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTP   81 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtp   81 (231)
                      +++|+++.++++++|++++|  .+++|+|+||+|||||+++|+|...+    ..|.++................++.+.+
T Consensus         9 ~~~~~~~~~l~~is~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~----~~G~i~~~g~~~~~~~~~~~~~~~~~~~   82 (207)
T PRK13539          9 ACVRGGRVLFSGLSFTLAAG--EALVLTGPNGSGKTTLLRLIAGLLPP----AAGTIKLDGGDIDDPDVAEACHYLGHRN   82 (207)
T ss_pred             EEEECCeEEEeceEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CCceEEECCEeCcchhhHhhcEEecCCC
Confidence            56788888999999999999  99999999999999999999999773    3343332221100000123345666666


Q ss_pred             CCcCCCCC
Q 038053           82 GLFDSSAG   89 (231)
Q Consensus        82 g~~~~~~~   89 (231)
                      .+++..+.
T Consensus        83 ~~~~~~tv   90 (207)
T PRK13539         83 AMKPALTV   90 (207)
T ss_pred             cCCCCCcH
Confidence            66554433

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.22  E-value=4.5e-12  Score=107.77  Aligned_cols=88  Identities=17%  Similarity=0.138  Sum_probs=66.3

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-EEeeCCcEEEEEe
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-TVLKDGQVVNVID   79 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~D   79 (231)
                      +++.|++..++++++|++++|  .+++|+|+||||||||+++|+|...+    +.|.+..+..... ........++++|
T Consensus        10 l~~~~~~~~~l~~vs~~i~~G--e~~~l~GpsGsGKSTLLr~iaGl~~p----~~G~I~i~g~~~~~~~~~~r~ig~v~Q   83 (353)
T TIGR03265        10 IRKRFGAFTALKDISLSVKKG--EFVCLLGPSGCGKTTLLRIIAGLERQ----TAGTIYQGGRDITRLPPQKRDYGIVFQ   83 (353)
T ss_pred             EEEEeCCeEEEEeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHCCCCC----CceEEEECCEECCCCCHHHCCEEEEeC
Confidence            356788888999999999999  99999999999999999999999873    4444433322110 0011345788999


Q ss_pred             CCCCcCCCCCchHHH
Q 038053           80 TPGLFDSSAGSEFVG   94 (231)
Q Consensus        80 tpg~~~~~~~~~~~~   94 (231)
                      .+.++++.++.+++.
T Consensus        84 ~~~lfp~~tv~eNi~   98 (353)
T TIGR03265        84 SYALFPNLTVADNIA   98 (353)
T ss_pred             CcccCCCCcHHHHHH
Confidence            999999887766653

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.22  E-value=9.2e-12  Score=100.70  Aligned_cols=86  Identities=17%  Similarity=0.161  Sum_probs=61.2

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-EE---eeCCcEEE
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-TV---LKDGQVVN   76 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-~~---~~~~~~~~   76 (231)
                      +++.|++.+++++++|++.+|  .+++|+|+||+|||||+++|+|...+    ..|.++....... ..   .......+
T Consensus         8 l~~~~~~~~~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~p----~~G~i~~~g~~~~~~~~~~~~~~~i~~   81 (242)
T TIGR03411         8 LSVSFDGFKALNDLSLYVDPG--ELRVIIGPNGAGKTTMMDVITGKTRP----DEGSVLFGGTDLTGLPEHQIARAGIGR   81 (242)
T ss_pred             eEEEcCCeEEeeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCC----CCCeEEECCeecCCCCHHHHHhcCeeE
Confidence            356788788999999999999  99999999999999999999999763    3443333221100 00   00234677


Q ss_pred             EEeCCCCcCCCCCchH
Q 038053           77 VIDTPGLFDSSAGSEF   92 (231)
Q Consensus        77 l~Dtpg~~~~~~~~~~   92 (231)
                      +++.+.+++..+..++
T Consensus        82 ~~q~~~~~~~~tv~~n   97 (242)
T TIGR03411        82 KFQKPTVFENLTVFEN   97 (242)
T ss_pred             eccccccCCCCCHHHH
Confidence            8888888876554443

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.22  E-value=7.3e-12  Score=98.30  Aligned_cols=84  Identities=19%  Similarity=0.158  Sum_probs=57.9

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eE-EeeCCcEEEEEe
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TT-VLKDGQVVNVID   79 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~-~~~~~~~~~l~D   79 (231)
                      ++.|+++.++++++|++.+|  .+++|+|+||+|||||+++|+|...+    ..|.+....... .. ........++.+
T Consensus         7 ~~~~~~~~~l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~----~~G~i~~~g~~~~~~~~~~~~~i~~~~q   80 (198)
T TIGR01189         7 ACSRGERMLFEGLSFTLNAG--EALQVTGPNGIGKTTLLRILAGLLRP----DSGEVRWNGTALAEQRDEPHRNILYLGH   80 (198)
T ss_pred             EEEECCEEEEeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCC----CccEEEECCEEcccchHHhhhheEEecc
Confidence            56788889999999999999  99999999999999999999999763    333332221110 00 000234566777


Q ss_pred             CCCCcCCCCCch
Q 038053           80 TPGLFDSSAGSE   91 (231)
Q Consensus        80 tpg~~~~~~~~~   91 (231)
                      .+.+++..+..+
T Consensus        81 ~~~~~~~~tv~~   92 (198)
T TIGR01189        81 LPGLKPELSALE   92 (198)
T ss_pred             CcccccCCcHHH
Confidence            777765444333

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.22  E-value=6.4e-12  Score=99.11  Aligned_cols=75  Identities=15%  Similarity=0.127  Sum_probs=53.9

Q ss_pred             CCCCCC-cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeC
Q 038053            2 SSGMGE-RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDT   80 (231)
Q Consensus         2 ~~~~~~-~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dt   80 (231)
                      ++.|++ +.++++++|++.+|  .+++|+|+||||||||+++|+|...+    ..|.++................++++.
T Consensus         6 ~~~~~~~~~~l~~v~~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p----~~G~i~~~g~~~~~~~~~~~i~~~~q~   79 (205)
T cd03226           6 SFSYKKGTEILDDLSLDLYAG--EIIALTGKNGAGKTTLAKILAGLIKE----SSGSILLNGKPIKAKERRKSIGYVMQD   79 (205)
T ss_pred             EEEeCCcCceeeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCC----CceEEEECCEEhhhHHhhcceEEEecC
Confidence            567777 78999999999999  99999999999999999999999873    344333222110000112346778887


Q ss_pred             CC
Q 038053           81 PG   82 (231)
Q Consensus        81 pg   82 (231)
                      |.
T Consensus        80 ~~   81 (205)
T cd03226          80 VD   81 (205)
T ss_pred             hh
Confidence            64

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.22  E-value=7.3e-12  Score=98.76  Aligned_cols=84  Identities=18%  Similarity=0.141  Sum_probs=58.6

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eE-EeeCCcEEEEEe
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TT-VLKDGQVVNVID   79 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~-~~~~~~~~~l~D   79 (231)
                      ++.|+++.++++++|++++|  .+++|+|+||||||||+++|+|...+    ..|.+....... .. ........++.+
T Consensus         8 ~~~~~~~~~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~p----~~G~v~~~g~~~~~~~~~~~~~~~~~~~   81 (204)
T PRK13538          8 ACERDERILFSGLSFTLNAG--ELVQIEGPNGAGKTSLLRILAGLARP----DAGEVLWQGEPIRRQRDEYHQDLLYLGH   81 (204)
T ss_pred             EEEECCEEEEecceEEECCC--cEEEEECCCCCCHHHHHHHHhCCCCC----CCcEEEECCEEcccchHHhhhheEEeCC
Confidence            56778888999999999999  99999999999999999999999873    333333221110 00 001234566777


Q ss_pred             CCCCcCCCCCch
Q 038053           80 TPGLFDSSAGSE   91 (231)
Q Consensus        80 tpg~~~~~~~~~   91 (231)
                      .+.+++..+..+
T Consensus        82 ~~~~~~~~tv~e   93 (204)
T PRK13538         82 QPGIKTELTALE   93 (204)
T ss_pred             ccccCcCCcHHH
Confidence            777776544433

>PRK10908 cell division protein FtsE; Provisional

Probab=99.22  E-value=9.2e-12  Score=99.42  Aligned_cols=82  Identities=16%  Similarity=0.068  Sum_probs=58.0

Q ss_pred             CCCC-CCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEE-----eeCCcE
Q 038053            2 SSGM-GERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTV-----LKDGQV   74 (231)
Q Consensus         2 ~~~~-~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~-----~~~~~~   74 (231)
                      ++.| +++.++++++|++.+|  .+++|+|+||||||||+++|+|...+    ..|.+....... ...     ......
T Consensus         8 ~~~~~~~~~~l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~----~~G~i~~~g~~i~~~~~~~~~~~~~~i   81 (222)
T PRK10908          8 SKAYLGGRQALQGVTFHMRPG--EMAFLTGHSGAGKSTLLKLICGIERP----SAGKIWFSGHDITRLKNREVPFLRRQI   81 (222)
T ss_pred             EEEecCCCeEEeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CceEEEECCEEcccCChhHHHHHHhhe
Confidence            5567 6678999999999999  99999999999999999999999873    344333322110 000     002356


Q ss_pred             EEEEeCCCCcCCCCC
Q 038053           75 VNVIDTPGLFDSSAG   89 (231)
Q Consensus        75 ~~l~Dtpg~~~~~~~   89 (231)
                      .++++.|.+++..+.
T Consensus        82 ~~~~q~~~~~~~~tv   96 (222)
T PRK10908         82 GMIFQDHHLLMDRTV   96 (222)
T ss_pred             EEEecCccccccccH
Confidence            788888887654443

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.21  E-value=7.1e-12  Score=99.44  Aligned_cols=85  Identities=15%  Similarity=0.063  Sum_probs=59.5

Q ss_pred             CCCCCC-cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE------EeeCCcE
Q 038053            2 SSGMGE-RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT------VLKDGQV   74 (231)
Q Consensus         2 ~~~~~~-~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~------~~~~~~~   74 (231)
                      ++.|++ +.+++++++++.+|  .+++|+|+||||||||+++|+|...+    ..|.++........      .......
T Consensus         7 ~~~~~~~~~~l~~~sl~i~~G--~~~~i~G~nGsGKSTLl~~l~G~~~~----~~G~i~~~g~~i~~~~~~~~~~~~~~i   80 (214)
T cd03292           7 TKTYPNGTAALDGINISISAG--EFVFLVGPSGAGKSTLLKLIYKEELP----TSGTIRVNGQDVSDLRGRAIPYLRRKI   80 (214)
T ss_pred             EEEeCCCceeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCC----CceEEEECCEEcccCCHHHHHHHHHhe
Confidence            456753 67999999999999  99999999999999999999999763    33433332211000      0012356


Q ss_pred             EEEEeCCCCcCCCCCchH
Q 038053           75 VNVIDTPGLFDSSAGSEF   92 (231)
Q Consensus        75 ~~l~Dtpg~~~~~~~~~~   92 (231)
                      .++++.|.+++..+..++
T Consensus        81 ~~v~q~~~~~~~~t~~~~   98 (214)
T cd03292          81 GVVFQDFRLLPDRNVYEN   98 (214)
T ss_pred             EEEecCchhccCCcHHHH
Confidence            788999988875554443

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.21  E-value=2e-10  Score=95.99  Aligned_cols=150  Identities=20%  Similarity=0.306  Sum_probs=86.5

Q ss_pred             cCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcccc-----ccCCCCcceeeeeeeEEee-C--CcEEEEEeCCCCcCCC
Q 038053           16 PTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKA-----SADSSGVTKTCEMKTTVLK-D--GQVVNVIDTPGLFDSS   87 (231)
Q Consensus        16 ~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~-----~~~~~~~t~~~~~~~~~~~-~--~~~~~l~Dtpg~~~~~   87 (231)
                      ..+..|-.+.+.++|.+|.|||||+|.|++......     ....+..|........... +  ...+.|+||||+.+..
T Consensus        14 ~~~KkG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~v   93 (366)
T KOG2655|consen   14 KSVKKGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAV   93 (366)
T ss_pred             HHHhcCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccc
Confidence            345677779999999999999999999999854221     0111212222222222221 2  2467789999998644


Q ss_pred             CCc-------hHHHHHHHHHHhh-------hc--CCccEEEEEEECCCCCCHHHHHhcCCCCcHHHHHHHHHhhHHHHHh
Q 038053           88 AGS-------EFVGKEIVKRIGL-------AK--GGIHAVLVVFSVRSRFSQEEEAANGGQPYTDEFLAELKRGATELRD  151 (231)
Q Consensus        88 ~~~-------~~~~~~~~~~~~~-------~~--~~~~~il~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  151 (231)
                      .-.       +.+...+..++..       ..  .++|++|+++.++         ..+..|+-+..   |.    .|..
T Consensus        94 dns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~---------ghgL~p~Di~~---Mk----~l~~  157 (366)
T KOG2655|consen   94 DNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPT---------GHGLKPLDIEF---MK----KLSK  157 (366)
T ss_pred             cccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCC---------CCCCcHhhHHH---HH----HHhc
Confidence            221       1222223333221       11  3889999999998         34455554444   33    3444


Q ss_pred             hcc---chhhhhhhhHhhHHHHHHHHHHHHHHH
Q 038053          152 QQA---EVDSLKEYSKQEISKLMGQMQESYEDQ  181 (231)
Q Consensus       152 ~~~---~i~~is~~~~~~i~~l~~~i~~~~~~~  181 (231)
                      .++   -|..-..++...+..++..+.+..+.+
T Consensus       158 ~vNiIPVI~KaD~lT~~El~~~K~~I~~~i~~~  190 (366)
T KOG2655|consen  158 KVNLIPVIAKADTLTKDELNQFKKRIRQDIEEH  190 (366)
T ss_pred             cccccceeeccccCCHHHHHHHHHHHHHHHHHc
Confidence            444   223334567777777777776655444

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.21  E-value=1.6e-11  Score=94.07  Aligned_cols=116  Identities=20%  Similarity=0.128  Sum_probs=69.8

Q ss_pred             CCCCCCc--ccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eE--EeeCCcEEE
Q 038053            2 SSGMGER--VIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TT--VLKDGQVVN   76 (231)
Q Consensus         2 ~~~~~~~--~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~--~~~~~~~~~   76 (231)
                      ++.|++.  .++++++|++++|  ..++|+|+||+|||||+++|+|...+    ..|.+....... ..  ........+
T Consensus         7 ~~~~~~~~~~~l~~i~~~i~~G--~~~~l~G~nGsGKstLl~~i~G~~~~----~~G~i~~~g~~~~~~~~~~~~~~i~~   80 (171)
T cd03228           7 SFSYPGRPKPVLKDVSLTIKPG--EKVAIVGPSGSGKSTLLKLLLRLYDP----TSGEILIDGVDLRDLDLESLRKNIAY   80 (171)
T ss_pred             EEEcCCCCcccccceEEEEcCC--CEEEEECCCCCCHHHHHHHHHcCCCC----CCCEEEECCEEhhhcCHHHHHhhEEE
Confidence            4567665  7999999999999  99999999999999999999999873    333332221110 00  000234567


Q ss_pred             EEeCCCCcCCCCCchHH---HHHHHHHHhhhc-CCccEEEEEEECCCCCCHHH
Q 038053           77 VIDTPGLFDSSAGSEFV---GKEIVKRIGLAK-GGIHAVLVVFSVRSRFSQEE  125 (231)
Q Consensus        77 l~Dtpg~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~il~vvd~~~~~~~~~  125 (231)
                      +++.|.+++. +..+++   ++.-+-.+..++ ..+ .++++.+++.+++...
T Consensus        81 ~~~~~~~~~~-t~~e~lLS~G~~~rl~la~al~~~p-~llllDEP~~gLD~~~  131 (171)
T cd03228          81 VPQDPFLFSG-TIRENILSGGQRQRIAIARALLRDP-PILILDEATSALDPET  131 (171)
T ss_pred             EcCCchhccc-hHHHHhhCHHHHHHHHHHHHHhcCC-CEEEEECCCcCCCHHH
Confidence            7888776652 333221   111111222332 344 5666666765555444

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.21  E-value=5.8e-11  Score=106.81  Aligned_cols=138  Identities=16%  Similarity=0.234  Sum_probs=87.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      ++|+++|.+|+|||||++.|.+......  ..+++|.........+..+..+.++||||....           ......
T Consensus        88 p~V~I~Ghvd~GKTSLl~~l~~~~v~~~--e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F-----------~~~r~r  154 (587)
T TIGR00487        88 PVVTIMGHVDHGKTSLLDSIRKTKVAQG--EAGGITQHIGAYHVENEDGKMITFLDTPGHEAF-----------TSMRAR  154 (587)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcccc--cCCceeecceEEEEEECCCcEEEEEECCCCcch-----------hhHHHh
Confidence            7999999999999999999998754321  345566554444444423348899999996542           111223


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhh---H----HHHHhh------c---cchhhhhhh
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRG---A----TELRDQ------Q---AEVDSLKEY  162 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~---~----~~l~~~------~---~~i~~is~~  162 (231)
                      ....+|.+++|+|+.+++......     .....|++ .++|++|..   .    ..+...      .   .+++++||+
T Consensus       155 ga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiI-VviNKiDl~~~~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAk  233 (587)
T TIGR00487       155 GAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPII-VAINKIDKPEANPDRVKQELSEYGLVPEDWGGDTIFVPVSAL  233 (587)
T ss_pred             hhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEE-EEEECcccccCCHHHHHHHHHHhhhhHHhcCCCceEEEEECC
Confidence            446789999999998666544433     12233433 334444321   0    112111      0   147789999


Q ss_pred             hHhhHHHHHHHHH
Q 038053          163 SKQEISKLMGQMQ  175 (231)
Q Consensus       163 ~~~~i~~l~~~i~  175 (231)
                      +|.|+.+++..+.
T Consensus       234 tGeGI~eLl~~I~  246 (587)
T TIGR00487       234 TGDGIDELLDMIL  246 (587)
T ss_pred             CCCChHHHHHhhh
Confidence            9999999988775

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.21  E-value=9.2e-12  Score=102.32  Aligned_cols=86  Identities=20%  Similarity=0.160  Sum_probs=61.1

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-E-----EeeCCcEE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-T-----VLKDGQVV   75 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-~-----~~~~~~~~   75 (231)
                      ++.|+++.++++++|++++|  .+++|+|+||||||||+++|+|...+    ..|.+........ .     ........
T Consensus        14 ~~~~~~~~il~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p----~~G~i~~~g~~i~~~~~~~~~~~~~~i~   87 (269)
T PRK11831         14 SFTRGNRCIFDNISLTVPRG--KITAIMGPSGIGKTTLLRLIGGQIAP----DHGEILFDGENIPAMSRSRLYTVRKRMS   87 (269)
T ss_pred             EEEECCEEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CCceEEECCEEccccChhhHHHHhhcEE
Confidence            56778888999999999999  99999999999999999999999873    3343333221100 0     00023467


Q ss_pred             EEEeCCCCcCCCCCchHH
Q 038053           76 NVIDTPGLFDSSAGSEFV   93 (231)
Q Consensus        76 ~l~Dtpg~~~~~~~~~~~   93 (231)
                      ++++.+.+++..+..+++
T Consensus        88 ~v~q~~~~~~~~tv~enl  105 (269)
T PRK11831         88 MLFQSGALFTDMNVFDNV  105 (269)
T ss_pred             EEecccccCCCCCHHHHH
Confidence            788888887765554443

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.21  E-value=5.3e-10  Score=86.63  Aligned_cols=138  Identities=14%  Similarity=0.066  Sum_probs=79.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEEee--CCcEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTVLK--DGQVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      +|+++|.+|+|||||++.+++....    .....|...... .....  ....+.+.||||...           +....
T Consensus         2 ki~vvG~~~vGKTsli~~l~~~~~~----~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~-----------~~~~~   66 (187)
T cd04132           2 KIVVVGDGGCGKTCLLIVYSQGKFP----EEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEE-----------YDRLR   66 (187)
T ss_pred             eEEEECCCCCCHHHHHHHHHhCcCC----CCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchh-----------HHHHH
Confidence            6999999999999999999987642    222222222221 12221  123577899999542           11112


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHh-------------hHHHHHhhcc--chh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKR-------------GATELRDQQA--EVD  157 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~-------------~~~~l~~~~~--~i~  157 (231)
                      ...+..+|++++|+|.++.-+..+..         .....|++ .+.++.|.             +...+....+  +++
T Consensus        67 ~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~  145 (187)
T cd04132          67 PLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIM-LVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYL  145 (187)
T ss_pred             HHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE-EEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEE
Confidence            22357889999999998543332221         11233443 23333321             0012222222  567


Q ss_pred             hhhhhhHhhHHHHHHHHHHHH
Q 038053          158 SLKEYSKQEISKLMGQMQESY  178 (231)
Q Consensus       158 ~is~~~~~~i~~l~~~i~~~~  178 (231)
                      .+|+++|.|+.+++..+....
T Consensus       146 e~Sa~~~~~v~~~f~~l~~~~  166 (187)
T cd04132         146 ECSAKTMENVEEVFDTAIEEA  166 (187)
T ss_pred             EccCCCCCCHHHHHHHHHHHH
Confidence            789999999999888877653

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.21  E-value=3.4e-11  Score=92.50  Aligned_cols=117  Identities=19%  Similarity=0.127  Sum_probs=70.8

Q ss_pred             CCCCCC--cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee---EEeeCCcEEE
Q 038053            2 SSGMGE--RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT---TVLKDGQVVN   76 (231)
Q Consensus         2 ~~~~~~--~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~   76 (231)
                      +++|++  ..+++++++++++|  ..++|+|+||+|||||+++|+|...+    ..|.+........   .........+
T Consensus         7 ~~~~~~~~~~~l~~~~~~i~~G--e~~~i~G~nGsGKStLl~~l~G~~~~----~~G~i~~~g~~~~~~~~~~~~~~i~~   80 (173)
T cd03246           7 SFRYPGAEPPVLRNVSFSIEPG--ESLAIIGPSGSGKSTLARLILGLLRP----TSGRVRLDGADISQWDPNELGDHVGY   80 (173)
T ss_pred             EEEcCCCCCcceeeeEEEECCC--CEEEEECCCCCCHHHHHHHHHhccCC----CCCeEEECCEEcccCCHHHHHhheEE
Confidence            456654  56999999999999  99999999999999999999999873    3443332221100   0001245677


Q ss_pred             EEeCCCCcCCCCCchHH---HHHHHHHHhhhcCCccEEEEEEECCCCCCHHH
Q 038053           77 VIDTPGLFDSSAGSEFV---GKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEE  125 (231)
Q Consensus        77 l~Dtpg~~~~~~~~~~~---~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~  125 (231)
                      +.+.|.+++. +..+++   ++.-+-.+..++.....++++-+++..++...
T Consensus        81 ~~q~~~~~~~-tv~~~lLS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~  131 (173)
T cd03246          81 LPQDDELFSG-SIAENILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEG  131 (173)
T ss_pred             ECCCCccccC-cHHHHCcCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHH
Confidence            8888877653 333321   22222223333333334666666765555444

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.21  E-value=1.3e-10  Score=87.84  Aligned_cols=140  Identities=17%  Similarity=0.139  Sum_probs=77.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEee-CCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      .+|+++|++|||||||+|.+++...........+.+.  ........ ....+.++|+||...           +.....
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~v~~~~~~~~~~i~D~~G~~~-----------~~~~~~   68 (163)
T cd01860           2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAF--LTQTVNLDDTTVKFEIWDTAGQER-----------YRSLAP   68 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeE--EEEEEEECCEEEEEEEEeCCchHH-----------HHHHHH
Confidence            5899999999999999999999875321111111111  11112221 234577899999432           111122


Q ss_pred             hhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhh------H---HHHHhhc-cchhhhhhhh
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRG------A---TELRDQQ-AEVDSLKEYS  163 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~------~---~~l~~~~-~~i~~is~~~  163 (231)
                      ..+..+|++++++|+++.-+.....         .....|++ .+.++.+..      .   ..+.... .+++.+|+.+
T Consensus        69 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ii-vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  147 (163)
T cd01860          69 MYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIA-LVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKT  147 (163)
T ss_pred             HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEE-EEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCC
Confidence            2346789999999998432221111         11122232 223333311      0   1111111 2577889999


Q ss_pred             HhhHHHHHHHHHHH
Q 038053          164 KQEISKLMGQMQES  177 (231)
Q Consensus       164 ~~~i~~l~~~i~~~  177 (231)
                      |.|+..++..+.+.
T Consensus       148 ~~~v~~l~~~l~~~  161 (163)
T cd01860         148 GENVNELFTEIAKK  161 (163)
T ss_pred             CCCHHHHHHHHHHH
Confidence            99999998887653

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.21  E-value=6.4e-12  Score=106.88  Aligned_cols=86  Identities=21%  Similarity=0.189  Sum_probs=63.9

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEEeeCCcEEEEEeC
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTVLKDGQVVNVIDT   80 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~Dt   80 (231)
                      ++.|++..++++++|++.+|  .+++|+|+||||||||+++|+|...+    ..|.++.+.... ..........++++.
T Consensus         9 ~~~~~~~~~l~~isl~i~~G--e~~~llGpsGsGKSTLLr~IaGl~~p----~~G~I~i~g~~i~~~~~~~r~i~~v~Q~   82 (353)
T PRK10851          9 KKSFGRTQVLNDISLDIPSG--QMVALLGPSGSGKTTLLRIIAGLEHQ----TSGHIRFHGTDVSRLHARDRKVGFVFQH   82 (353)
T ss_pred             EEEeCCeEEEEEeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CCcEEEECCEECCCCCHHHCCEEEEecC
Confidence            56788888999999999999  99999999999999999999999873    444443322211 000112457889999


Q ss_pred             CCCcCCCCCchHH
Q 038053           81 PGLFDSSAGSEFV   93 (231)
Q Consensus        81 pg~~~~~~~~~~~   93 (231)
                      +.+++..++.+++
T Consensus        83 ~~l~p~~tv~eni   95 (353)
T PRK10851         83 YALFRHMTVFDNI   95 (353)
T ss_pred             cccCCCCcHHHHH
Confidence            9998876665544

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.21  E-value=6.4e-12  Score=99.32  Aligned_cols=84  Identities=21%  Similarity=0.287  Sum_probs=58.9

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEEeeCCcEEEEEeC
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTVLKDGQVVNVIDT   80 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~Dt   80 (231)
                      ++.|++.+++++++|++.+|  ..++|+|+||||||||+++|+|...+    ..|.+....... ..........++++.
T Consensus         7 ~~~~~~~~~l~~~~~~i~~G--~~~~i~G~nGsGKSTLl~~l~Gl~~~----~~G~i~~~g~~~~~~~~~~~~i~~~~q~   80 (208)
T cd03268           7 TKTYGKKRVLDDISLHVKKG--EIYGFLGPNGAGKTTTMKIILGLIKP----DSGEITFDGKSYQKNIEALRRIGALIEA   80 (208)
T ss_pred             EEEECCeEeEeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCcCC----CceEEEECCCcccchHHHHhhEEEecCC
Confidence            56777788999999999999  99999999999999999999999763    333333221100 000012346678888


Q ss_pred             CCCcCCCCCch
Q 038053           81 PGLFDSSAGSE   91 (231)
Q Consensus        81 pg~~~~~~~~~   91 (231)
                      +.+++..+..+
T Consensus        81 ~~~~~~~tv~e   91 (208)
T cd03268          81 PGFYPNLTARE   91 (208)
T ss_pred             CccCccCcHHH
Confidence            87776554433

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.21  E-value=9.6e-12  Score=101.23  Aligned_cols=85  Identities=15%  Similarity=0.171  Sum_probs=60.5

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-E-------------
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-T-------------   67 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-~-------------   67 (231)
                      ++.|++..++++++|++.+|  .+++|+|+||||||||+++|+|...+    ..|.++....... .             
T Consensus         7 ~~~~~~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~----~~G~i~~~g~~i~~~~~~~~~~~~~~~~   80 (252)
T TIGR03005         7 TKRFGILTVLDGLNFSVAAG--EKVALIGPSGSGKSTILRILMTLEPI----DEGQIQVEGEQLYHMPGRNGPLVPADEK   80 (252)
T ss_pred             EEEeCCeeEEeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CceEEEECCEEccccccccccccccchh
Confidence            56777788999999999999  99999999999999999999999873    3333332221100 0             


Q ss_pred             --EeeCCcEEEEEeCCCCcCCCCCchH
Q 038053           68 --VLKDGQVVNVIDTPGLFDSSAGSEF   92 (231)
Q Consensus        68 --~~~~~~~~~l~Dtpg~~~~~~~~~~   92 (231)
                        ........++++.+.+++..+..++
T Consensus        81 ~~~~~~~~i~~v~q~~~~~~~~tv~~n  107 (252)
T TIGR03005        81 HLRQMRNKIGMVFQSFNLFPHKTVLDN  107 (252)
T ss_pred             HHHHHhhCeEEEecCcccCCCCcHHHH
Confidence              0013456788888888775554433

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.21  E-value=6.1e-12  Score=100.04  Aligned_cols=85  Identities=16%  Similarity=0.108  Sum_probs=58.6

Q ss_pred             CCCCCC--cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-EE-----eeCCc
Q 038053            2 SSGMGE--RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-TV-----LKDGQ   73 (231)
Q Consensus         2 ~~~~~~--~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-~~-----~~~~~   73 (231)
                      ++.|++  +.+++++++++++|  .+++|+|+||||||||+++|+|...+    ..|.++....... ..     .....
T Consensus         8 ~~~~~~~~~~il~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~----~~G~i~~~g~~~~~~~~~~~~~~~~~   81 (216)
T TIGR00960         8 SKAYPGGHQPALDNLNFHITKG--EMVFLVGHSGAGKSTFLKLILGIEKP----TRGKIRFNGQDLTRLRGREIPFLRRH   81 (216)
T ss_pred             EEEecCCCeeEEEeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CceEEEECCEehhhcChhHHHHHHHh
Confidence            456743  46999999999999  99999999999999999999999763    3343333221100 00     00234


Q ss_pred             EEEEEeCCCCcCCCCCchH
Q 038053           74 VVNVIDTPGLFDSSAGSEF   92 (231)
Q Consensus        74 ~~~l~Dtpg~~~~~~~~~~   92 (231)
                      ..++++.|.+++..+..++
T Consensus        82 i~~~~q~~~~~~~~tv~e~  100 (216)
T TIGR00960        82 IGMVFQDHRLLSDRTVYDN  100 (216)
T ss_pred             ceEEecCccccccccHHHH
Confidence            6788888888775554443

>cd01858 NGP_1 NGP-1

Probab=99.21  E-value=3.5e-11  Score=90.96  Aligned_cols=55  Identities=29%  Similarity=0.364  Sum_probs=42.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGL   83 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~   83 (231)
                      ..|+++|.||+|||||+|+|.|......+ ..+++|+......    .+..++++||||+
T Consensus       103 ~~v~~~G~~nvGKStliN~l~~~~~~~~~-~~~g~T~~~~~~~----~~~~~~liDtPGi  157 (157)
T cd01858         103 ISVGFIGYPNVGKSSIINTLRSKKVCKVA-PIPGETKVWQYIT----LMKRIYLIDCPGV  157 (157)
T ss_pred             eEEEEEeCCCCChHHHHHHHhcCCceeeC-CCCCeeEeEEEEE----cCCCEEEEECcCC
Confidence            78999999999999999999998776554 4566666543321    2345889999995

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.21  E-value=7.6e-11  Score=89.00  Aligned_cols=140  Identities=19%  Similarity=0.165  Sum_probs=78.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEee-CCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      .+|+++|++|||||||++.+++.....   ...+.+........... ....+.++||||....           .....
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----------~~~~~   66 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVE---DYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDY-----------AAIRD   66 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCcc---ccCCcchhhEEEEEEECCEEEEEEEEECCChhhh-----------hHHHH
Confidence            379999999999999999999765321   11112211111111110 2345778999996531           11122


Q ss_pred             hhcCCccEEEEEEECCCCCCHHHHH--------h--cCCCCcHHHHHHHHHhhH---------HHHHhhc-cchhhhhhh
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEEEA--------A--NGGQPYTDEFLAELKRGA---------TELRDQQ-AEVDSLKEY  162 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~~~--------~--~~~~~~~~~~~~~~~~~~---------~~l~~~~-~~i~~is~~  162 (231)
                      ..+..++.++++++..+.-+-....        .  ....|++ .++++.|...         ..+.... -+++.+|++
T Consensus        67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-iv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  145 (164)
T cd04139          67 NYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLL-LVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAK  145 (164)
T ss_pred             HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEEccccccccccCHHHHHHHHHHhCCeEEEeeCC
Confidence            2345678999999987422111111        1  1234433 3344444210         1222222 267889999


Q ss_pred             hHhhHHHHHHHHHHHH
Q 038053          163 SKQEISKLMGQMQESY  178 (231)
Q Consensus       163 ~~~~i~~l~~~i~~~~  178 (231)
                      ++.|+++++..+...+
T Consensus       146 ~~~gi~~l~~~l~~~~  161 (164)
T cd04139         146 TRQNVEKAFYDLVREI  161 (164)
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            9999999988876543

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.21  E-value=6.1e-12  Score=101.78  Aligned_cols=85  Identities=18%  Similarity=0.037  Sum_probs=61.2

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee---------EEeeCC
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT---------TVLKDG   72 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~---------~~~~~~   72 (231)
                      ++.|+++.++++++|++.+|  .+++|+|+||+|||||+++|+|...+    ..|.++.......         ......
T Consensus         9 ~~~~~~~~il~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~----~~G~i~~~g~~~~~~~~~~~~~~~~~~~   82 (242)
T PRK11124          9 NCFYGAHQALFDITLDCPQG--ETLVLLGPSGAGKSSLLRVLNLLEMP----RSGTLNIAGNHFDFSKTPSDKAIRELRR   82 (242)
T ss_pred             EEEECCeeeEeeeeeEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CceEEEECCEecccccccchhhHHHHHh
Confidence            56788888999999999999  99999999999999999999999873    3443433222100         000123


Q ss_pred             cEEEEEeCCCCcCCCCCchH
Q 038053           73 QVVNVIDTPGLFDSSAGSEF   92 (231)
Q Consensus        73 ~~~~l~Dtpg~~~~~~~~~~   92 (231)
                      ..+++++.|.+++..+..++
T Consensus        83 ~i~~~~q~~~~~~~~tv~e~  102 (242)
T PRK11124         83 NVGMVFQQYNLWPHLTVQQN  102 (242)
T ss_pred             heEEEecCccccCCCcHHHH
Confidence            56788898888875554443

>cd04175 Rap1 Rap1 subgroup

Probab=99.21  E-value=7.7e-11  Score=89.33  Aligned_cols=137  Identities=15%  Similarity=0.168  Sum_probs=77.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+++|.+|||||||++.++.....   ....+++.......... .+  ..+.+.||||.....        .+.   
T Consensus         2 ~ki~~~G~~~~GKTsli~~~~~~~~~---~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~--------~~~---   66 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFVQGIFV---EKYDPTIEDSYRKQVEV-DGQQCMLEILDTAGTEQFT--------AMR---   66 (164)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhCCCC---cccCCcchheEEEEEEE-CCEEEEEEEEECCCcccch--------hHH---
Confidence            58999999999999999998854321   11122222111112222 32  345689999975311        111   


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH----------hcCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA----------ANGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKE  161 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~  161 (231)
                      ...+..+|++++++|.++.-+..+..          .....|++ .+.++.|..         ...+....+ +++.+||
T Consensus        67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  145 (164)
T cd04175          67 DLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMI-LVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSA  145 (164)
T ss_pred             HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeC
Confidence            12335679999999987433222211          11233443 233333210         012322232 6788999


Q ss_pred             hhHhhHHHHHHHHHH
Q 038053          162 YSKQEISKLMGQMQE  176 (231)
Q Consensus       162 ~~~~~i~~l~~~i~~  176 (231)
                      ++|.|+++++..+.+
T Consensus       146 ~~~~~v~~~~~~l~~  160 (164)
T cd04175         146 KAKINVNEIFYDLVR  160 (164)
T ss_pred             CCCCCHHHHHHHHHH
Confidence            999999999888765

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.21  E-value=1.1e-11  Score=100.74  Aligned_cols=87  Identities=18%  Similarity=0.081  Sum_probs=65.9

Q ss_pred             CCCCCCC-----cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE------Ee
Q 038053            1 MSSGMGE-----RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT------VL   69 (231)
Q Consensus         1 ~~~~~~~-----~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~------~~   69 (231)
                      +||.|..     ..++++++++|++|  .++|+||++|||||||+++|.+...    |+.|.+..+......      ..
T Consensus         7 vsK~~~~~~~~~~~al~~vsL~I~~G--eI~GIIG~SGAGKSTLiR~iN~Le~----PtsG~v~v~G~di~~l~~~~Lr~   80 (339)
T COG1135           7 VSKTFGQTGTGTVTALDDVSLEIPKG--EIFGIIGYSGAGKSTLLRLINLLER----PTSGSVFVDGQDLTALSEAELRQ   80 (339)
T ss_pred             eeeeeccCCCCceeeeccceEEEcCC--cEEEEEcCCCCcHHHHHHHHhccCC----CCCceEEEcCEecccCChHHHHH
Confidence            3566654     57899999999999  9999999999999999999999998    555555554422111      11


Q ss_pred             eCCcEEEEEeCCCCcCCCCCchHH
Q 038053           70 KDGQVVNVIDTPGLFDSSAGSEFV   93 (231)
Q Consensus        70 ~~~~~~~l~Dtpg~~~~~~~~~~~   93 (231)
                      .+...+++++.+++....++.+++
T Consensus        81 ~R~~IGMIFQhFnLLssrTV~~Nv  104 (339)
T COG1135          81 LRQKIGMIFQHFNLLSSRTVFENV  104 (339)
T ss_pred             HHhhccEEeccccccccchHHhhh
Confidence            145788999999998877766544

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.21  E-value=7.7e-12  Score=107.06  Aligned_cols=86  Identities=21%  Similarity=0.201  Sum_probs=62.9

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEEeeCCcEEEEEeC
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTVLKDGQVVNVIDT   80 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~Dt   80 (231)
                      ++.|++..++++++|++++|  .+++|+|+||||||||+++|+|...+    ..|.+....... ..........++++.
T Consensus        10 ~~~~~~~~vl~~vsl~i~~G--e~~~l~G~nGsGKSTLL~~iaGl~~p----~~G~I~~~g~~i~~~~~~~~~i~~v~Q~   83 (369)
T PRK11000         10 TKAYGDVVISKDINLDIHEG--EFVVFVGPSGCGKSTLLRMIAGLEDI----TSGDLFIGEKRMNDVPPAERGVGMVFQS   83 (369)
T ss_pred             EEEeCCeEEEeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCC----CceEEEECCEECCCCCHhHCCEEEEeCC
Confidence            56788888999999999999  99999999999999999999999873    333333222110 000012457889999


Q ss_pred             CCCcCCCCCchHH
Q 038053           81 PGLFDSSAGSEFV   93 (231)
Q Consensus        81 pg~~~~~~~~~~~   93 (231)
                      +.+++..++.+++
T Consensus        84 ~~l~~~~tv~eni   96 (369)
T PRK11000         84 YALYPHLSVAENM   96 (369)
T ss_pred             cccCCCCCHHHHH
Confidence            9988876665544

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.21  E-value=4.6e-12  Score=101.49  Aligned_cols=44  Identities=18%  Similarity=0.160  Sum_probs=41.6

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      ++.|+++.++++++|++.+|  .+++|+|+||||||||+++|+|..
T Consensus         7 ~~~~~~~~~l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260           7 NVYYGDKHALKDISLDIPKG--EITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             EEEcCCceeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHhhc
Confidence            56788888999999999999  999999999999999999999997

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.20  E-value=2.7e-10  Score=86.19  Aligned_cols=137  Identities=20%  Similarity=0.199  Sum_probs=78.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      +|+++|++|||||||+|.+++.....   ...+++.+........ .+  ..+.++||||.....        .+.   .
T Consensus         2 ki~v~G~~~~GKTsli~~~~~~~~~~---~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~--------~~~---~   66 (164)
T smart00173        2 KLVVLGSGGVGKSALTIQFVQGHFVD---DYDPTIEDSYRKQIEI-DGEVCLLDILDTAGQEEFS--------AMR---D   66 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCcCCc---ccCCchhhhEEEEEEE-CCEEEEEEEEECCCcccch--------HHH---H
Confidence            79999999999999999999865321   1111121111111222 22  356689999965421        111   1


Q ss_pred             hhcCCccEEEEEEECCCCCCHHHHH----------hcCCCCcHHHHHHHHHhhH---------HHHHhhcc-chhhhhhh
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEEEA----------ANGGQPYTDEFLAELKRGA---------TELRDQQA-EVDSLKEY  162 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~---------~~l~~~~~-~i~~is~~  162 (231)
                      ..+..+|++++++|+++.-+.....          .....|++ .+.++.+...         ..+....+ +++.+|++
T Consensus        67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  145 (164)
T smart00173       67 QYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIV-LVGNKCDLESERVVSTEEGKELARQWGCPFLETSAK  145 (164)
T ss_pred             HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECccccccceEcHHHHHHHHHHcCCEEEEeecC
Confidence            2235679999999998532222211          11233443 3334443210         11222222 67889999


Q ss_pred             hHhhHHHHHHHHHHH
Q 038053          163 SKQEISKLMGQMQES  177 (231)
Q Consensus       163 ~~~~i~~l~~~i~~~  177 (231)
                      ++.|+++++..+.+.
T Consensus       146 ~~~~i~~l~~~l~~~  160 (164)
T smart00173      146 ERVNVDEAFYDLVRE  160 (164)
T ss_pred             CCCCHHHHHHHHHHH
Confidence            999999998887653

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.20  E-value=5.8e-11  Score=109.48  Aligned_cols=138  Identities=14%  Similarity=0.219  Sum_probs=89.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+|+|..|+|||||++.|.+......  ..+++|.........+ .+..+.++||||.....           .....
T Consensus       291 pvV~ImGhvd~GKTSLl~~Lr~~~v~~~--e~~GIT~~iga~~v~~-~~~~ItfiDTPGhe~F~-----------~m~~r  356 (787)
T PRK05306        291 PVVTIMGHVDHGKTSLLDAIRKTNVAAG--EAGGITQHIGAYQVET-NGGKITFLDTPGHEAFT-----------AMRAR  356 (787)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcccc--ccCceeeeccEEEEEE-CCEEEEEEECCCCccch-----------hHHHh
Confidence            7999999999999999999987654321  3456666555555555 57789999999975421           11123


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhhH-------HHHHh------hc---cchhhhhhh
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRGA-------TELRD------QQ---AEVDSLKEY  162 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-------~~l~~------~~---~~i~~is~~  162 (231)
                      ....+|++++|+|+.+++......     .....|++ .++|++|...       ..|..      ..   -+++++|++
T Consensus       357 ga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiI-VviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAk  435 (787)
T PRK05306        357 GAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPII-VAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAK  435 (787)
T ss_pred             hhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEE-EEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCC
Confidence            346789999999998766554433     22234433 3445544210       12211      01   157889999


Q ss_pred             hHhhHHHHHHHHHH
Q 038053          163 SKQEISKLMGQMQE  176 (231)
Q Consensus       163 ~~~~i~~l~~~i~~  176 (231)
                      +|.|+..|+..+..
T Consensus       436 tG~GI~eLle~I~~  449 (787)
T PRK05306        436 TGEGIDELLEAILL  449 (787)
T ss_pred             CCCCchHHHHhhhh
Confidence            99999999887653

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.20  E-value=1.2e-11  Score=99.09  Aligned_cols=79  Identities=19%  Similarity=0.133  Sum_probs=56.9

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee---EEeeCCcEEEE
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT---TVLKDGQVVNV   77 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~l   77 (231)
                      +++.|+++.++++++|++++|  .+++|+|+||||||||+++|+|...+    ..|.+........   .........++
T Consensus        13 l~~~~~~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~----~~G~i~~~g~~~~~~~~~~~~~~i~~~   86 (225)
T PRK10247         13 VGYLAGDAKILNNISFSLRAG--EFKLITGPSGCGKSTLLKIVASLISP----TSGTLLFEGEDISTLKPEIYRQQVSYC   86 (225)
T ss_pred             cEEeeCCceeeeccEEEEcCC--CEEEEECCCCCCHHHHHHHHhcccCC----CCCeEEECCEEcCcCCHHHHHhccEEE
Confidence            356788888999999999999  99999999999999999999998763    3443332221100   00012345678


Q ss_pred             EeCCCCcC
Q 038053           78 IDTPGLFD   85 (231)
Q Consensus        78 ~Dtpg~~~   85 (231)
                      ++.|.+++
T Consensus        87 ~q~~~l~~   94 (225)
T PRK10247         87 AQTPTLFG   94 (225)
T ss_pred             eccccccc
Confidence            88888775

>cd04109 Rab28 Rab28 subfamily

Probab=99.20  E-value=8.7e-11  Score=93.35  Aligned_cols=142  Identities=18%  Similarity=0.139  Sum_probs=80.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeC--CcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      +|+++|.+|||||||+|.+++.....  ...+..+.+..........  ...+.+.||||...        ...+.   .
T Consensus         2 Ki~ivG~~~vGKSsLi~~l~~~~~~~--~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~--------~~~l~---~   68 (215)
T cd04109           2 KIVVLGDGAVGKTSLCRRFAKEGFGK--SYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSI--------GGKML---D   68 (215)
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCCC--CCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHH--------HHHHH---H
Confidence            68999999999999999999865311  1122222222222222212  34677999999432        11222   2


Q ss_pred             hhcCCccEEEEEEECCCCCCHHHHH--------hc---CCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhh
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEEEA--------AN---GGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKE  161 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~~~--------~~---~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~  161 (231)
                      ..+..+|++++|+|+++.-+.....        ..   ...+.+..+.++.|..         ...+....+ +.+.+||
T Consensus        69 ~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSA  148 (215)
T cd04109          69 KYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSA  148 (215)
T ss_pred             HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEEC
Confidence            2346789999999998543322221        11   1122222344444411         012222222 4667899


Q ss_pred             hhHhhHHHHHHHHHHHHH
Q 038053          162 YSKQEISKLMGQMQESYE  179 (231)
Q Consensus       162 ~~~~~i~~l~~~i~~~~~  179 (231)
                      ++|.|+.++++.+...+.
T Consensus       149 ktg~gv~~lf~~l~~~l~  166 (215)
T cd04109         149 KTGDRVNLLFQQLAAELL  166 (215)
T ss_pred             CCCCCHHHHHHHHHHHHH
Confidence            999999999988877543

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.20  E-value=1.2e-11  Score=99.55  Aligned_cols=86  Identities=15%  Similarity=0.125  Sum_probs=59.4

Q ss_pred             CCCCCC----cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-EE------ee
Q 038053            2 SSGMGE----RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-TV------LK   70 (231)
Q Consensus         2 ~~~~~~----~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-~~------~~   70 (231)
                      ++.|+.    ..+|++++|++++|  .+++|+|+||||||||+++|+|...    +..|.++....... ..      ..
T Consensus        12 ~~~~~~~~~~~~il~~isl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~----~~~G~i~~~g~~i~~~~~~~~~~~~   85 (233)
T PRK11629         12 CKRYQEGSVQTDVLHNVSFSIGEG--EMMAIVGSSGSGKSTLLHLLGGLDT----PTSGDVIFNGQPMSKLSSAAKAELR   85 (233)
T ss_pred             EEEcCCCCcceeeEEeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhcCCC----CCceEEEECCEEcCcCCHHHHHHHH
Confidence            455643    46999999999999  9999999999999999999999976    34444443321110 00      00


Q ss_pred             CCcEEEEEeCCCCcCCCCCchHH
Q 038053           71 DGQVVNVIDTPGLFDSSAGSEFV   93 (231)
Q Consensus        71 ~~~~~~l~Dtpg~~~~~~~~~~~   93 (231)
                      .....++++.|.+++..+..+++
T Consensus        86 ~~~i~~v~q~~~~~~~~tv~e~l  108 (233)
T PRK11629         86 NQKLGFIYQFHHLLPDFTALENV  108 (233)
T ss_pred             hccEEEEecCcccCCCCCHHHHH
Confidence            13467888888887755544443

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.20  E-value=1.3e-11  Score=98.48  Aligned_cols=85  Identities=15%  Similarity=0.093  Sum_probs=58.7

Q ss_pred             CCCCCC----cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEE------ee
Q 038053            2 SSGMGE----RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTV------LK   70 (231)
Q Consensus         2 ~~~~~~----~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~------~~   70 (231)
                      ++.|++    .+++++++|++.+|  .+++|+|+||||||||+++|+|...+    ..|.+....... ...      ..
T Consensus         8 ~~~~~~~~~~~~~l~~isl~i~~G--~~~~i~G~nGsGKSTLl~~i~G~~~~----~~G~i~~~g~~~~~~~~~~~~~~~   81 (221)
T TIGR02211         8 GKRYQEGKLDTRVLKGVSLSIGKG--EIVAIVGSSGSGKSTLLHLLGGLDNP----TSGEVLFNGQSLSKLSSNERAKLR   81 (221)
T ss_pred             eEEccCCCcceEeEeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCC----CCcEEEECCEEhhhcCHhHHHHHH
Confidence            456653    46999999999999  99999999999999999999999873    344333222110 000      00


Q ss_pred             CCcEEEEEeCCCCcCCCCCchH
Q 038053           71 DGQVVNVIDTPGLFDSSAGSEF   92 (231)
Q Consensus        71 ~~~~~~l~Dtpg~~~~~~~~~~   92 (231)
                      .....++++.|.+++..+..++
T Consensus        82 ~~~i~~v~q~~~~~~~~tv~~~  103 (221)
T TIGR02211        82 NKKLGFIYQFHHLLPDFTALEN  103 (221)
T ss_pred             HhcEEEEecccccCCCCcHHHH
Confidence            1346788888888765544433

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>CHL00071 tufA elongation factor Tu

Probab=99.20  E-value=6.8e-11  Score=102.67  Aligned_cols=93  Identities=16%  Similarity=0.201  Sum_probs=63.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCccccc--------------cCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCC
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKAFKAS--------------ADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSA   88 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~--------------~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~   88 (231)
                      ..+|+++|++++|||||+|+|++......+              ....+.|.+........ .+..+.++||||..    
T Consensus        12 ~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~~~iDtPGh~----   86 (409)
T CHL00071         12 HVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYET-ENRHYAHVDCPGHA----   86 (409)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEcc-CCeEEEEEECCChH----
Confidence            378999999999999999999986322111              01245565543333333 56778899999943    


Q ss_pred             CchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH
Q 038053           89 GSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA  127 (231)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~  127 (231)
                             .+...+...+..+|.+++|+|+..++...+..
T Consensus        87 -------~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~  118 (409)
T CHL00071         87 -------DYVKNMITGAAQMDGAILVVSAADGPMPQTKE  118 (409)
T ss_pred             -------HHHHHHHHHHHhCCEEEEEEECCCCCcHHHHH
Confidence                   23333334456789999999998777776654

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.20  E-value=4.5e-10  Score=101.39  Aligned_cols=141  Identities=18%  Similarity=0.210  Sum_probs=88.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccc-ccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKA-SADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      +|+++|++|+|||||+|+|+|...... .....++|.+........ .+..+.++|+||..           .+...+..
T Consensus         2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~-~~~~v~~iDtPGhe-----------~f~~~~~~   69 (581)
T TIGR00475         2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPL-PDYRLGFIDVPGHE-----------KFISNAIA   69 (581)
T ss_pred             EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEe-CCEEEEEEECCCHH-----------HHHHHHHh
Confidence            699999999999999999998642110 012346666655544554 56788999999942           23333334


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhhH--------HHHHhh--------ccchhhhhhh
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRGA--------TELRDQ--------QAEVDSLKEY  162 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~--------~~l~~~--------~~~i~~is~~  162 (231)
                      ....+|.+++|+|+++++......     ...+.+..+.++|++|...        .++.+.        ..+++++|++
T Consensus        70 g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~  149 (581)
T TIGR00475        70 GGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAK  149 (581)
T ss_pred             hhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCC
Confidence            457789999999998766554433     1223331223334433100        122221        1267889999


Q ss_pred             hHhhHHHHHHHHHHH
Q 038053          163 SKQEISKLMGQMQES  177 (231)
Q Consensus       163 ~~~~i~~l~~~i~~~  177 (231)
                      +|.|+++++..+...
T Consensus       150 tG~GI~eL~~~L~~l  164 (581)
T TIGR00475       150 TGQGIGELKKELKNL  164 (581)
T ss_pred             CCCCchhHHHHHHHH
Confidence            999999888766543

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.20  E-value=4.8e-13  Score=102.26  Aligned_cols=86  Identities=19%  Similarity=0.147  Sum_probs=65.8

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-----EEeeCCcEE
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-----TVLKDGQVV   75 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-----~~~~~~~~~   75 (231)
                      +.|.|+++.++++++|.+.+|  ..|||+|||||||||.|++++|...+.+|    .+..+..-..     ... .-..+
T Consensus        10 l~K~y~kr~Vv~~Vsl~v~~G--EiVGLLGPNGAGKTT~Fymi~Glv~~d~G----~i~ld~~diT~lPm~~RA-rlGig   82 (243)
T COG1137          10 LAKSYKKRKVVNDVSLEVNSG--EIVGLLGPNGAGKTTTFYMIVGLVRPDSG----KILLDDEDITKLPMHKRA-RLGIG   82 (243)
T ss_pred             hhHhhCCeeeeeeeeEEEcCC--cEEEEECCCCCCceeEEEEEEEEEecCCc----eEEECCcccccCChHHHh-hcCcc
Confidence            468999999999999999999  99999999999999999999999885443    3322211100     001 23568


Q ss_pred             EEEeCCCCcCCCCCchHH
Q 038053           76 NVIDTPGLFDSSAGSEFV   93 (231)
Q Consensus        76 ~l~Dtpg~~~~~~~~~~~   93 (231)
                      |++|.|.+|...++.+++
T Consensus        83 YLpQE~SIFr~LtV~dNi  100 (243)
T COG1137          83 YLPQEASIFRKLTVEDNI  100 (243)
T ss_pred             cccccchHhhcCcHHHHH
Confidence            899999999888776654

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.20  E-value=1.6e-10  Score=96.75  Aligned_cols=87  Identities=18%  Similarity=0.190  Sum_probs=60.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEee-----------------------CCcEEEEEeCCC
Q 038053           26 VVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLK-----------------------DGQVVNVIDTPG   82 (231)
Q Consensus        26 i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-----------------------~~~~~~l~Dtpg   82 (231)
                      |+|||.||+|||||||+|++.....  .+.+.+|.++..+.....                       ....+.++||||
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~--~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aG   78 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEI--ANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAG   78 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcc--cCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCC
Confidence            6899999999999999999986422  245566666555433220                       224688999999


Q ss_pred             CcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECC
Q 038053           83 LFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVR  118 (231)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~  118 (231)
                      +.++......++..++..+    ..+|++++|+|+.
T Consensus        79 lv~ga~~~~glg~~fL~~i----r~aD~ii~Vvd~~  110 (318)
T cd01899          79 LVPGAHEGKGLGNKFLDDL----RDADALIHVVDAS  110 (318)
T ss_pred             CCCCccchhhHHHHHHHHH----HHCCEEEEEEeCC
Confidence            9765544444555554444    5669999999997

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.20  E-value=1e-10  Score=90.00  Aligned_cols=135  Identities=13%  Similarity=0.097  Sum_probs=77.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+++|.+|||||||++.+......   ...+  |.......... ....+.+.||||...           +......
T Consensus        14 ~ki~l~G~~~~GKTsL~~~~~~~~~~---~~~~--t~~~~~~~~~~-~~~~l~l~D~~G~~~-----------~~~~~~~   76 (175)
T smart00177       14 MRILMVGLDAAGKTTILYKLKLGESV---TTIP--TIGFNVETVTY-KNISFTVWDVGGQDK-----------IRPLWRH   76 (175)
T ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCCC---CcCC--ccccceEEEEE-CCEEEEEEECCCChh-----------hHHHHHH
Confidence            78999999999999999999533221   1111  22222222233 567788999999654           1111223


Q ss_pred             hcCCccEEEEEEECCCCCCHHH--HH----hc----CCCCcHHHHHHHHHhh----HHHHHhhcc---------chhhhh
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEE--EA----AN----GGQPYTDEFLAELKRG----ATELRDQQA---------EVDSLK  160 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~--~~----~~----~~~~~~~~~~~~~~~~----~~~l~~~~~---------~i~~is  160 (231)
                      .+..+|++++|+|++++-+..+  ..    ..    ...|++ .+.++.|..    ..++.+.+.         .+..+|
T Consensus        77 ~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~pii-lv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S  155 (175)
T smart00177       77 YYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVIL-VFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTC  155 (175)
T ss_pred             HhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEE-EEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEee
Confidence            3578899999999985322211  11    11    112332 344443311    022322221         244689


Q ss_pred             hhhHhhHHHHHHHHHH
Q 038053          161 EYSKQEISKLMGQMQE  176 (231)
Q Consensus       161 ~~~~~~i~~l~~~i~~  176 (231)
                      |++|.|+.++++.+.+
T Consensus       156 a~~g~gv~e~~~~l~~  171 (175)
T smart00177      156 ATSGDGLYEGLTWLSN  171 (175)
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            9999999999887655

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.20  E-value=1.9e-11  Score=96.34  Aligned_cols=68  Identities=22%  Similarity=0.256  Sum_probs=53.7

Q ss_pred             CCCCCCc-----ccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEE
Q 038053            2 SSGMGER-----VIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVN   76 (231)
Q Consensus         2 ~~~~~~~-----~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~   76 (231)
                      +++|+..     .++++++|++++|  .+++|+|+||+|||||+++|+|...    +..|.+..          .+...+
T Consensus         7 ~~~~~~~~~~~~~il~~~s~~i~~G--~~~~i~G~nG~GKSTLl~~i~G~~~----~~~G~i~~----------~g~i~~   70 (204)
T cd03250           7 SFTWDSGEQETSFTLKDINLEVPKG--ELVAIVGPVGSGKSSLLSALLGELE----KLSGSVSV----------PGSIAY   70 (204)
T ss_pred             EEecCCCCccccceeeeeeEEECCC--CEEEEECCCCCCHHHHHHHHhCcCC----CCCCeEEE----------cCEEEE
Confidence            4567653     7999999999999  9999999999999999999999977    34443332          335667


Q ss_pred             EEeCCCCcC
Q 038053           77 VIDTPGLFD   85 (231)
Q Consensus        77 l~Dtpg~~~   85 (231)
                      +++.|.+++
T Consensus        71 ~~q~~~l~~   79 (204)
T cd03250          71 VSQEPWIQN   79 (204)
T ss_pred             EecCchhcc
Confidence            788877664

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.20  E-value=1.5e-11  Score=98.62  Aligned_cols=85  Identities=20%  Similarity=0.153  Sum_probs=58.2

Q ss_pred             CCCCCC----cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-EE------ee
Q 038053            2 SSGMGE----RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-TV------LK   70 (231)
Q Consensus         2 ~~~~~~----~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-~~------~~   70 (231)
                      ++.|+.    ..++++++|++.+|  .+++|+|+||+|||||+++|+|...+    ..|.+........ ..      ..
T Consensus        13 ~~~~~~~~~~~~~l~~~s~~i~~G--e~~~i~G~nGsGKSTLl~~i~Gl~~p----~~G~i~~~g~~~~~~~~~~~~~~~   86 (228)
T PRK10584         13 KKSVGQGEHELSILTGVELVVKRG--ETIALIGESGSGKSTLLAILAGLDDG----SSGEVSLVGQPLHQMDEEARAKLR   86 (228)
T ss_pred             EEEccCCCcceEEEeccEEEEcCC--CEEEEECCCCCCHHHHHHHHHcCCCC----CCeeEEECCEEcccCCHHHHHHHH
Confidence            456654    35999999999999  99999999999999999999999873    3443332221100 00      00


Q ss_pred             CCcEEEEEeCCCCcCCCCCchH
Q 038053           71 DGQVVNVIDTPGLFDSSAGSEF   92 (231)
Q Consensus        71 ~~~~~~l~Dtpg~~~~~~~~~~   92 (231)
                      .....++++.|.+++..+..++
T Consensus        87 ~~~i~~~~q~~~l~~~~tv~~~  108 (228)
T PRK10584         87 AKHVGFVFQSFMLIPTLNALEN  108 (228)
T ss_pred             hheEEEEEcccccCCCcCHHHH
Confidence            1346778888888775444333

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.20  E-value=1.3e-11  Score=99.94  Aligned_cols=83  Identities=13%  Similarity=0.128  Sum_probs=57.7

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCC--ccccccCCCCcceeeeeeeE----EeeCCcEE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRK--AFKASADSSGVTKTCEMKTT----VLKDGQVV   75 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~--~~~~~~~~~~~t~~~~~~~~----~~~~~~~~   75 (231)
                      ++.|+++.+|++++|++++|  .+++|+|+||||||||+++|+|..  .    +..|.+.........    ........
T Consensus         7 ~~~~~~~~~l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~----~~~G~i~~~g~~~~~~~~~~~~~~~i~   80 (243)
T TIGR01978         7 HVSVEDKEILKGVNLTVKKG--EIHAIMGPNGSGKSTLSKTIAGHPSYE----VTSGTILFKGQDLLELEPDERARAGLF   80 (243)
T ss_pred             EEEECCEEEEeccceEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCC----CCcceEEECCEecCCCCHHHhhccceE
Confidence            56788888999999999999  999999999999999999999984  3    233333332211000    00012256


Q ss_pred             EEEeCCCCcCCCCCc
Q 038053           76 NVIDTPGLFDSSAGS   90 (231)
Q Consensus        76 ~l~Dtpg~~~~~~~~   90 (231)
                      ++++.|.+++..+..
T Consensus        81 ~v~q~~~~~~~~t~~   95 (243)
T TIGR01978        81 LAFQYPEEIPGVSNL   95 (243)
T ss_pred             eeeccccccCCcCHH
Confidence            778888887655433

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.20  E-value=1.3e-11  Score=99.57  Aligned_cols=84  Identities=19%  Similarity=0.080  Sum_probs=58.8

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEE-eeCCcEEEEEe
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTV-LKDGQVVNVID   79 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~-~~~~~~~~l~D   79 (231)
                      ++.|+++.+++++++++.+|  .+++|+|+||||||||+++|+|...+    ..|.+....... ... .......++++
T Consensus         8 ~~~~~~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~p----~~G~i~~~g~~i~~~~~~~~~~i~~~~q   81 (236)
T TIGR03864         8 SFAYGARRALDDVSFTVRPG--EFVALLGPNGAGKSTLFSLLTRLYVA----QEGQISVAGHDLRRAPRAALARLGVVFQ   81 (236)
T ss_pred             EEEECCEEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCcCC----CceEEEECCEEcccCChhhhhhEEEeCC
Confidence            55677788999999999999  99999999999999999999999873    333333222110 000 00134677888


Q ss_pred             CCCCcCCCCCch
Q 038053           80 TPGLFDSSAGSE   91 (231)
Q Consensus        80 tpg~~~~~~~~~   91 (231)
                      .|.+++..+..+
T Consensus        82 ~~~~~~~~t~~~   93 (236)
T TIGR03864        82 QPTLDLDLSVRQ   93 (236)
T ss_pred             CCCCcccCcHHH
Confidence            887766544433

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.19  E-value=1.4e-11  Score=100.70  Aligned_cols=82  Identities=21%  Similarity=0.123  Sum_probs=57.6

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eE--EeeCCcEEEEE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TT--VLKDGQVVNVI   78 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~--~~~~~~~~~l~   78 (231)
                      ++.|+++.+|++++|++.+|  .+++|+|+||||||||+++|+|...+    ..|.+....... ..  ........+++
T Consensus         9 ~~~~~~~~il~~is~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~p----~~G~i~~~g~~~~~~~~~~~~~~i~~~~   82 (258)
T PRK13548          9 SVRLGGRTLLDDVSLTLRPG--EVVAILGPNGAGKSTLLRALSGELSP----DSGEVRLNGRPLADWSPAELARRRAVLP   82 (258)
T ss_pred             EEEeCCeeeeeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CCCEEEECCEEcccCCHHHhhhheEEEc
Confidence            56788888999999999999  99999999999999999999999763    344333322110 00  00023456778


Q ss_pred             eCCCCcCCCCC
Q 038053           79 DTPGLFDSSAG   89 (231)
Q Consensus        79 Dtpg~~~~~~~   89 (231)
                      +.+.+++..+.
T Consensus        83 q~~~~~~~~tv   93 (258)
T PRK13548         83 QHSSLSFPFTV   93 (258)
T ss_pred             cCCcCCCCCCH
Confidence            87776554443

>cd04123 Rab21 Rab21 subfamily

Probab=99.19  E-value=7.8e-11  Score=88.66  Aligned_cols=138  Identities=14%  Similarity=0.091  Sum_probs=76.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEee-CCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      +|+++|++|+|||||+|.+++......  ..+.++........... ....+.++|+||....        ...   ...
T Consensus         2 ki~i~G~~~~GKStli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~~---~~~   68 (162)
T cd04123           2 KVVLLGEGRVGKTSLVLRYVENKFNEK--HESTTQASFFQKTVNIGGKRIDLAIWDTAGQERY--------HAL---GPI   68 (162)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCC--cCCccceeEEEEEEEECCEEEEEEEEECCchHHH--------HHh---hHH
Confidence            699999999999999999998765221  11122111111122221 1235778999994321        111   112


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH--------h-cCCCCcHHHHHHHHHhhH------H---HHHhhc-cchhhhhhhhH
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA--------A-NGGQPYTDEFLAELKRGA------T---ELRDQQ-AEVDSLKEYSK  164 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~------~---~l~~~~-~~i~~is~~~~  164 (231)
                      .+..+|++++|+|+++.-+.....        . ....|.+ .++++.+...      .   .+.... .+++.+|+.++
T Consensus        69 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  147 (162)
T cd04123          69 YYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLV-IVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTG  147 (162)
T ss_pred             HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEE-EEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCC
Confidence            236789999999997533222211        1 1122332 2333333110      1   121212 25677899999


Q ss_pred             hhHHHHHHHHHH
Q 038053          165 QEISKLMGQMQE  176 (231)
Q Consensus       165 ~~i~~l~~~i~~  176 (231)
                      .|+.+++..+..
T Consensus       148 ~gi~~~~~~l~~  159 (162)
T cd04123         148 KGIEELFLSLAK  159 (162)
T ss_pred             CCHHHHHHHHHH
Confidence            999999888755

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.19  E-value=9.6e-12  Score=101.36  Aligned_cols=85  Identities=16%  Similarity=0.120  Sum_probs=59.8

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE----EeeCCcEEEE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT----VLKDGQVVNV   77 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~l   77 (231)
                      ++.|++.+++++++|++.+|  ..++|+|+||||||||+++|+|...+    ..|.+.........    .......+++
T Consensus        12 ~~~~~~~~~l~~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~----~~G~i~~~g~~~~~~~~~~~~~~~i~~~   85 (255)
T PRK11300         12 MMRFGGLLAVNNVNLEVREQ--EIVSLIGPNGAGKTTVFNCLTGFYKP----TGGTILLRGQHIEGLPGHQIARMGVVRT   85 (255)
T ss_pred             EEEECCEEEEEeeeeEEcCC--eEEEEECCCCCCHHHHHHHHhCCcCC----CcceEEECCEECCCCCHHHHHhcCeEEe
Confidence            56778888999999999999  99999999999999999999999873    34433332211000    0002235567


Q ss_pred             EeCCCCcCCCCCchH
Q 038053           78 IDTPGLFDSSAGSEF   92 (231)
Q Consensus        78 ~Dtpg~~~~~~~~~~   92 (231)
                      ++.|.+++..+..++
T Consensus        86 ~q~~~~~~~~tv~en  100 (255)
T PRK11300         86 FQHVRLFREMTVIEN  100 (255)
T ss_pred             ccCcccCCCCcHHHH
Confidence            888888875554433

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.19  E-value=1.7e-10  Score=87.14  Aligned_cols=138  Identities=18%  Similarity=0.146  Sum_probs=77.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEe---eCCcEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVL---KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      +|+++|.+|+|||||+|.+++......  ..+....+........   .....+.+.||||...           +....
T Consensus         2 kv~~vG~~~~GKTsl~~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-----------~~~~~   68 (162)
T cd04106           2 KVIVVGNGNVGKSSMIQRFVKGIFTKD--YKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEE-----------FDAIT   68 (162)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCC--CCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHH-----------HHHhH
Confidence            699999999999999999998654211  1122212111111111   1235678999999432           11112


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH--------hcCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------ANGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKEYS  163 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~~~  163 (231)
                      ...+..+|++++|+|+++.-+.....        .....|.+ .+.++.|..         ...+....+ +++.+|+++
T Consensus        69 ~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~i-iv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~  147 (162)
T cd04106          69 KAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMV-LVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKD  147 (162)
T ss_pred             HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEE-EEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCC
Confidence            33456889999999997432222211        11233433 333443311         012222222 677899999


Q ss_pred             HhhHHHHHHHHHH
Q 038053          164 KQEISKLMGQMQE  176 (231)
Q Consensus       164 ~~~i~~l~~~i~~  176 (231)
                      +.|+++++..+..
T Consensus       148 ~~~v~~l~~~l~~  160 (162)
T cd04106         148 DFNVTELFEYLAE  160 (162)
T ss_pred             CCCHHHHHHHHHH
Confidence            9999998877654

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.19  E-value=4.2e-11  Score=93.52  Aligned_cols=87  Identities=13%  Similarity=0.057  Sum_probs=58.1

Q ss_pred             CCCCCC----cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEE
Q 038053            2 SSGMGE----RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNV   77 (231)
Q Consensus         2 ~~~~~~----~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l   77 (231)
                      ++.|+.    +++++++++++.+|  .+++|+|+||+|||||+++|+|.....  +..|.+..+........ .....++
T Consensus        10 ~~~~~~~~~~~~~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~~--~~~G~i~~~g~~~~~~~-~~~i~~~   84 (192)
T cd03232          10 NYTVPVKGGKRQLLNNISGYVKPG--TLTALMGESGAGKTTLLDVLAGRKTAG--VITGEILINGRPLDKNF-QRSTGYV   84 (192)
T ss_pred             EEEecCCCCceEeEEccEEEEeCC--cEEEEECCCCCCHHHHHHHHhCCCcCC--CcceEEEECCEehHHHh-hhceEEe
Confidence            345643    67999999999999  999999999999999999999974210  22333332211100111 3456778


Q ss_pred             EeCCCCcCCCCCchHH
Q 038053           78 IDTPGLFDSSAGSEFV   93 (231)
Q Consensus        78 ~Dtpg~~~~~~~~~~~   93 (231)
                      .+.|.+++..+..+++
T Consensus        85 ~q~~~~~~~~tv~~~l  100 (192)
T cd03232          85 EQQDVHSPNLTVREAL  100 (192)
T ss_pred             cccCccccCCcHHHHH
Confidence            8888887765555543

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.19  E-value=7.9e-11  Score=107.77  Aligned_cols=139  Identities=13%  Similarity=0.206  Sum_probs=87.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEee---CCcEEEEEeCCCCcCCCCCchHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLK---DGQVVNVIDTPGLFDSSAGSEFVGKEIVKR  100 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~  100 (231)
                      ++|+|+|++|+|||||+++|.+......  ..++.|.........+.   .+..+.++||||...           +...
T Consensus       245 p~V~IvGhvdvGKTSLld~L~~~~~~~~--e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~-----------F~~m  311 (742)
T CHL00189        245 PIVTILGHVDHGKTTLLDKIRKTQIAQK--EAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEA-----------FSSM  311 (742)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhccCccc--cCCccccccceEEEEEEecCCceEEEEEECCcHHH-----------HHHH
Confidence            7999999999999999999998765321  23455544333333331   247889999999542           2222


Q ss_pred             HhhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhhH-------HHHHhh------c---cchhhh
Q 038053          101 IGLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRGA-------TELRDQ------Q---AEVDSL  159 (231)
Q Consensus       101 ~~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-------~~l~~~------~---~~i~~i  159 (231)
                      ....+..+|++++|+|+.+++......     .....|++ .+++++|...       ..|...      .   -+++++
T Consensus       312 r~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiI-VViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~V  390 (742)
T CHL00189        312 RSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPII-VAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPI  390 (742)
T ss_pred             HHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEE-EEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEE
Confidence            233446789999999998765544332     22233433 3344444211       122111      1   267889


Q ss_pred             hhhhHhhHHHHHHHHHH
Q 038053          160 KEYSKQEISKLMGQMQE  176 (231)
Q Consensus       160 s~~~~~~i~~l~~~i~~  176 (231)
                      ||.+|.|+.+|+..+..
T Consensus       391 SAktG~GIdeLle~I~~  407 (742)
T CHL00189        391 SASQGTNIDKLLETILL  407 (742)
T ss_pred             ECCCCCCHHHHHHhhhh
Confidence            99999999999887765

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.19  E-value=2.1e-10  Score=89.99  Aligned_cols=95  Identities=18%  Similarity=0.208  Sum_probs=55.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCccccccC-CCC--cceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHH
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKAFKASAD-SSG--VTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVK   99 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~-~~~--~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~   99 (231)
                      +.+|+++|++|+|||||+|+|+|...+..+.. .+.  +|....  .........+.++||||+......    ..++..
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~l~l~DtpG~~~~~~~----~~~~l~   74 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRT--PYPHPKFPNVTLWDLPGIGSTAFP----PDDYLE   74 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCce--eeecCCCCCceEEeCCCCCcccCC----HHHHHH
Confidence            36899999999999999999999754322111 111  122111  111112346789999998753221    122222


Q ss_pred             HHhhhcCCccEEEEEEECCCCCCHHHHH
Q 038053          100 RIGLAKGGIHAVLVVFSVRSRFSQEEEA  127 (231)
Q Consensus       100 ~~~~~~~~~~~il~vvd~~~~~~~~~~~  127 (231)
                      ..  .+..+|.++++.+  ++++..+..
T Consensus        75 ~~--~~~~~d~~l~v~~--~~~~~~d~~   98 (197)
T cd04104          75 EM--KFSEYDFFIIISS--TRFSSNDVK   98 (197)
T ss_pred             Hh--CccCcCEEEEEeC--CCCCHHHHH
Confidence            21  2457788888754  356766644

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.19  E-value=1.5e-11  Score=106.92  Aligned_cols=86  Identities=19%  Similarity=0.125  Sum_probs=64.9

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEe----eCCcEEE
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVL----KDGQVVN   76 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~~   76 (231)
                      ++|+|++..+|++++|++.+|  .+.+|+|.||||||||++.|+|...    ++.|.+..+........    ......+
T Consensus        14 i~K~FggV~AL~~v~l~v~~G--EV~aL~GeNGAGKSTLmKiLsGv~~----p~~G~I~~~G~~~~~~sp~~A~~~GI~~   87 (500)
T COG1129          14 ISKSFGGVKALDGVSLTVRPG--EVHALLGENGAGKSTLMKILSGVYP----PDSGEILIDGKPVAFSSPRDALAAGIAT   87 (500)
T ss_pred             ceEEcCCceeeccceeEEeCc--eEEEEecCCCCCHHHHHHHHhCccc----CCCceEEECCEEccCCCHHHHHhCCcEE
Confidence            579999999999999999999  9999999999999999999999998    45555554433322111    1234566


Q ss_pred             EEeCCCCcCCCCCchH
Q 038053           77 VIDTPGLFDSSAGSEF   92 (231)
Q Consensus        77 l~Dtpg~~~~~~~~~~   92 (231)
                      +.|.+.+.+..++.++
T Consensus        88 V~QEl~L~p~LsVaeN  103 (500)
T COG1129          88 VHQELSLVPNLSVAEN  103 (500)
T ss_pred             EeechhccCCccHHHH
Confidence            7777777776655544

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.19  E-value=2.5e-11  Score=99.07  Aligned_cols=85  Identities=15%  Similarity=0.105  Sum_probs=60.3

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeee-------ee--EEeeCC
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEM-------KT--TVLKDG   72 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~-------~~--~~~~~~   72 (231)
                      +++|+++.++++++|++.+|  .+++|+|+||+|||||+++|+|...+..    |.++.....       ..  ......
T Consensus        17 ~~~~~~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~iaG~~~~~~----G~v~~~G~~~~~g~~~~~~~~~~~~~   90 (257)
T PRK14246         17 YLYINDKAILKDITIKIPNN--SIFGIMGPSGSGKSTLLKVLNRLIEIYD----SKIKVDGKVLYFGKDIFQIDAIKLRK   90 (257)
T ss_pred             EEecCCceeEeceEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCc----CceeEcCEEEECCcccccCCHHHHhc
Confidence            57889999999999999999  9999999999999999999999987433    222211110       00  000134


Q ss_pred             cEEEEEeCCCCcCCCCCchH
Q 038053           73 QVVNVIDTPGLFDSSAGSEF   92 (231)
Q Consensus        73 ~~~~l~Dtpg~~~~~~~~~~   92 (231)
                      ...++++.|.+++..+..++
T Consensus        91 ~i~~~~q~~~~~~~~tv~~n  110 (257)
T PRK14246         91 EVGMVFQQPNPFPHLSIYDN  110 (257)
T ss_pred             ceEEEccCCccCCCCcHHHH
Confidence            56788898888765554433

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.19  E-value=1.3e-11  Score=100.66  Aligned_cols=86  Identities=15%  Similarity=0.121  Sum_probs=61.7

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE--------------
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT--------------   67 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~--------------   67 (231)
                      ++.|+++.++++++|++.+|  .+++|+|+||+|||||+++|+|...+    ..|.++........              
T Consensus        12 ~~~~~~~~~l~~is~~i~~G--e~~~l~G~nGsGKSTLl~~i~G~~~~----~~G~i~~~g~~~~~~~~~~~~~~~~~~~   85 (257)
T PRK10619         12 HKRYGEHEVLKGVSLQANAG--DVISIIGSSGSGKSTFLRCINFLEKP----SEGSIVVNGQTINLVRDKDGQLKVADKN   85 (257)
T ss_pred             EEEECCEEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CCeEEEECCEEcccccccccccccccch
Confidence            56778888999999999999  99999999999999999999999873    33333332211000              


Q ss_pred             --EeeCCcEEEEEeCCCCcCCCCCchHH
Q 038053           68 --VLKDGQVVNVIDTPGLFDSSAGSEFV   93 (231)
Q Consensus        68 --~~~~~~~~~l~Dtpg~~~~~~~~~~~   93 (231)
                        ........++++.|.+++..+..+++
T Consensus        86 ~~~~~~~~i~~v~q~~~l~~~~sv~enl  113 (257)
T PRK10619         86 QLRLLRTRLTMVFQHFNLWSHMTVLENV  113 (257)
T ss_pred             HHHHHhhceEEEecCcccCCCCcHHHHH
Confidence              00124568889988887765554443

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.19  E-value=1.1e-11  Score=100.58  Aligned_cols=88  Identities=18%  Similarity=0.080  Sum_probs=59.9

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccc-cccCCCCcceeeeeee-----EEeeCCcEE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFK-ASADSSGVTKTCEMKT-----TVLKDGQVV   75 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~-~~~~~~~~t~~~~~~~-----~~~~~~~~~   75 (231)
                      ++.|++..++++++|++++|  .+++|+|+||||||||+++|+|...+. .....|.++.......     .........
T Consensus         8 ~~~~~~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~   85 (247)
T TIGR00972         8 NLFYGEKEALKNINLDIPKN--QVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVG   85 (247)
T ss_pred             EEEECCeeeecceeEEECCC--CEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheE
Confidence            56788788999999999999  999999999999999999999998632 0000333333221110     001124567


Q ss_pred             EEEeCCCCcCCCCCchH
Q 038053           76 NVIDTPGLFDSSAGSEF   92 (231)
Q Consensus        76 ~l~Dtpg~~~~~~~~~~   92 (231)
                      ++++.|.+++ .+..++
T Consensus        86 ~v~q~~~~~~-~tv~e~  101 (247)
T TIGR00972        86 MVFQKPNPFP-MSIYDN  101 (247)
T ss_pred             EEecCcccCC-CCHHHH
Confidence            8888888776 444433

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>cd04112 Rab26 Rab26 subfamily

Probab=99.19  E-value=1.3e-10  Score=90.53  Aligned_cols=140  Identities=14%  Similarity=0.126  Sum_probs=79.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      +|+++|.+|||||||++.+++...... ...+............. .+  ..+.|+||||...           +.....
T Consensus         2 Ki~vvG~~~vGKTSli~~~~~~~~~~~-~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~-----------~~~~~~   68 (191)
T cd04112           2 KVMLLGDSGVGKTCLLVRFKDGAFLNG-NFIATVGIDFRNKVVTV-DGVKVKLQIWDTAGQER-----------FRSVTH   68 (191)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCcc-CcCCcccceeEEEEEEE-CCEEEEEEEEeCCCcHH-----------HHHhhH
Confidence            699999999999999999988754211 01111111111111111 22  3567899999432           111122


Q ss_pred             hhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhhhh
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKEYS  163 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~~~  163 (231)
                      ..+..+|++++|+|+++.-+.....         .....|++ .+.++.|..         ...+..... +++.+|+.+
T Consensus        69 ~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~pii-iv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~  147 (191)
T cd04112          69 AYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIM-LLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKT  147 (191)
T ss_pred             HHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEE-EEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCC
Confidence            3346789999999998543222111         11223333 233443311         012322222 678899999


Q ss_pred             HhhHHHHHHHHHHHH
Q 038053          164 KQEISKLMGQMQESY  178 (231)
Q Consensus       164 ~~~i~~l~~~i~~~~  178 (231)
                      |.|+.+++..+.+..
T Consensus       148 ~~~v~~l~~~l~~~~  162 (191)
T cd04112         148 GLNVELAFTAVAKEL  162 (191)
T ss_pred             CCCHHHHHHHHHHHH
Confidence            999999998887654

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.19  E-value=2.4e-11  Score=109.51  Aligned_cols=79  Identities=19%  Similarity=0.100  Sum_probs=60.8

Q ss_pred             CCCCCC-CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEe
Q 038053            1 MSSGMG-ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVID   79 (231)
Q Consensus         1 ~~~~~~-~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~D   79 (231)
                      +++.|+ ++++|++++|++++|  .+++|+|+||||||||+++|+|...    +..|.+....        .....++++
T Consensus        10 ls~~~~~~~~il~~is~~i~~G--e~~~liG~NGsGKSTLl~~i~G~~~----p~~G~i~~~~--------~~~i~~v~Q   75 (552)
T TIGR03719        10 VSKVVPPKKEILKDISLSFFPG--AKIGVLGLNGAGKSTLLRIMAGVDK----EFNGEARPAP--------GIKVGYLPQ   75 (552)
T ss_pred             EEEecCCCCeeecCceEEECCC--CEEEEECCCCCCHHHHHHHHhCCCC----CCCceEEecC--------CCEEEEEec
Confidence            356787 778999999999999  9999999999999999999999987    3344333211        234678899


Q ss_pred             CCCCcCCCCCchHH
Q 038053           80 TPGLFDSSAGSEFV   93 (231)
Q Consensus        80 tpg~~~~~~~~~~~   93 (231)
                      .|.+++..++.+.+
T Consensus        76 ~~~~~~~~tv~e~i   89 (552)
T TIGR03719        76 EPQLDPTKTVRENV   89 (552)
T ss_pred             cCCCCCCCcHHHHH
Confidence            98887765555544

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.19  E-value=9.9e-11  Score=89.32  Aligned_cols=45  Identities=22%  Similarity=0.242  Sum_probs=40.6

Q ss_pred             CCCCC-CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053            2 SSGMG-ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus         2 ~~~~~-~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      ++.|+ ++.+++++++++.+|  .+++|+|+||||||||+++|+|...
T Consensus         7 ~~~~~~~~~~l~~i~l~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~   52 (166)
T cd03223           7 SLATPDGRVLLKDLSFEIKPG--DRLLITGPSGTGKSSLFRALAGLWP   52 (166)
T ss_pred             EEEcCCCCeeeecCeEEECCC--CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            45664 467999999999999  9999999999999999999999987

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.18  E-value=7.2e-11  Score=89.33  Aligned_cols=133  Identities=14%  Similarity=0.093  Sum_probs=75.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhh
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLA  104 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~  104 (231)
                      +|+++|.+|||||||++.+.......   ..+  |.......... ....+.+.||||...           +.......
T Consensus         2 kv~~~G~~~~GKTsli~~l~~~~~~~---~~p--t~g~~~~~~~~-~~~~~~l~D~~G~~~-----------~~~~~~~~   64 (159)
T cd04150           2 RILMVGLDAAGKTTILYKLKLGEIVT---TIP--TIGFNVETVEY-KNISFTVWDVGGQDK-----------IRPLWRHY   64 (159)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCcc---cCC--CCCcceEEEEE-CCEEEEEEECCCCHh-----------HHHHHHHH
Confidence            69999999999999999996443211   111  21112222222 567789999999743           11112234


Q ss_pred             cCCccEEEEEEECCCCC--CHHHHH----hc----CCCCcHHHHHHHHHhh----HHHHHhhcc---------chhhhhh
Q 038053          105 KGGIHAVLVVFSVRSRF--SQEEEA----AN----GGQPYTDEFLAELKRG----ATELRDQQA---------EVDSLKE  161 (231)
Q Consensus       105 ~~~~~~il~vvd~~~~~--~~~~~~----~~----~~~~~~~~~~~~~~~~----~~~l~~~~~---------~i~~is~  161 (231)
                      +..+|++++|+|.++.-  ......    ..    ...|++ .+.++.|..    ..++...+.         .+..+||
T Consensus        65 ~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~pii-lv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa  143 (159)
T cd04150          65 FQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLL-VFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCA  143 (159)
T ss_pred             hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEE-EEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeC
Confidence            57889999999998432  211111    01    123333 333443311    012211111         3456899


Q ss_pred             hhHhhHHHHHHHHH
Q 038053          162 YSKQEISKLMGQMQ  175 (231)
Q Consensus       162 ~~~~~i~~l~~~i~  175 (231)
                      ++|.|++++++.+.
T Consensus       144 k~g~gv~~~~~~l~  157 (159)
T cd04150         144 TSGDGLYEGLDWLS  157 (159)
T ss_pred             CCCCCHHHHHHHHh
Confidence            99999999887664

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.18  E-value=1.8e-10  Score=88.70  Aligned_cols=139  Identities=18%  Similarity=0.156  Sum_probs=79.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+|+|.+|+|||||++.+++.....   ...+++.......... .+  ..+.++||||....           ....
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~---~~~~t~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~-----------~~~~   66 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVE---SYYPTIENTFSKIIRY-KGQDYHLEIVDTAGQDEY-----------SILP   66 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCcc---ccCcchhhhEEEEEEE-CCEEEEEEEEECCChHhh-----------HHHH
Confidence            589999999999999999999775321   1111111111111222 22  34678999996531           1111


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH----------hcCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA----------ANGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKE  161 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~  161 (231)
                      ...+..++.+++++|.++..+.....          .....|.+ .+.++.|..         ...+..... +++.+|+
T Consensus        67 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  145 (180)
T cd04137          67 QKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIV-LVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSA  145 (180)
T ss_pred             HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeC
Confidence            22345678999999988533222211          11223333 334443311         012222222 6778899


Q ss_pred             hhHhhHHHHHHHHHHHH
Q 038053          162 YSKQEISKLMGQMQESY  178 (231)
Q Consensus       162 ~~~~~i~~l~~~i~~~~  178 (231)
                      +++.|+.+++..+...+
T Consensus       146 ~~~~gv~~l~~~l~~~~  162 (180)
T cd04137         146 RENENVEEAFELLIEEI  162 (180)
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            99999999998887654

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.18  E-value=2.3e-11  Score=109.69  Aligned_cols=79  Identities=19%  Similarity=0.093  Sum_probs=60.9

Q ss_pred             CCCCCC-CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEe
Q 038053            1 MSSGMG-ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVID   79 (231)
Q Consensus         1 ~~~~~~-~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~D   79 (231)
                      +++.|+ ++.+|++++|++++|  .+++|+|+||||||||+++|+|...    +..|.+....        .....++++
T Consensus        12 l~~~y~~~~~il~~vs~~i~~G--e~~~iiG~NGsGKSTLlk~i~G~~~----p~~G~i~~~~--------~~~i~~v~Q   77 (556)
T PRK11819         12 VSKVVPPKKQILKDISLSFFPG--AKIGVLGLNGAGKSTLLRIMAGVDK----EFEGEARPAP--------GIKVGYLPQ   77 (556)
T ss_pred             EEEEeCCCCeeeeCceEEECCC--CEEEEECCCCCCHHHHHHHHhCCCC----CCCceEEecC--------CCEEEEEec
Confidence            356787 788999999999999  9999999999999999999999987    3334333211        234667888


Q ss_pred             CCCCcCCCCCchHH
Q 038053           80 TPGLFDSSAGSEFV   93 (231)
Q Consensus        80 tpg~~~~~~~~~~~   93 (231)
                      .|.+++..++.+.+
T Consensus        78 ~~~~~~~~tv~e~l   91 (556)
T PRK11819         78 EPQLDPEKTVRENV   91 (556)
T ss_pred             CCCCCCCCcHHHHH
Confidence            88887765655554

>cd04144 Ras2 Ras2 subfamily

Probab=99.18  E-value=1e-10  Score=91.09  Aligned_cols=138  Identities=17%  Similarity=0.196  Sum_probs=77.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCc--EEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      +|+++|.+|||||||++.+++.....   ...+++.......... .+.  .+.+.||||.....        .+   ..
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~---~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~--------~~---~~   65 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVE---TYDPTIEDSYRKQVVV-DGQPCMLEVLDTAGQEEYT--------AL---RD   65 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCc---cCCCchHhhEEEEEEE-CCEEEEEEEEECCCchhhH--------HH---HH
Confidence            48999999999999999998654311   1111111111111222 333  46789999954311        11   12


Q ss_pred             hhcCCccEEEEEEECCCCCCHHHHH--------h----cCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhh
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEEEA--------A----NGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLK  160 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~~~--------~----~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is  160 (231)
                      ..+..+|++++|+|+++.-+.....        .    ....|++ .+.++.|..         ...+....+ +.+.+|
T Consensus        66 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~pii-lvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S  144 (190)
T cd04144          66 QWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIM-IVGNKCDKVYEREVSTEEGAALARRLGCEFIEAS  144 (190)
T ss_pred             HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEE-EEEEChhccccCccCHHHHHHHHHHhCCEEEEec
Confidence            2346779999999998543322211        1    1223433 233443321         012222222 567899


Q ss_pred             hhhHhhHHHHHHHHHHHH
Q 038053          161 EYSKQEISKLMGQMQESY  178 (231)
Q Consensus       161 ~~~~~~i~~l~~~i~~~~  178 (231)
                      |++|.|+.+++..+.+..
T Consensus       145 Ak~~~~v~~l~~~l~~~l  162 (190)
T cd04144         145 AKTNVNVERAFYTLVRAL  162 (190)
T ss_pred             CCCCCCHHHHHHHHHHHH
Confidence            999999999888876643

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.18  E-value=9.8e-12  Score=106.39  Aligned_cols=87  Identities=22%  Similarity=0.211  Sum_probs=64.9

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-EEeeCCcEEEEEeC
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-TVLKDGQVVNVIDT   80 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~Dt   80 (231)
                      ++.|++..++++++|++.+|  .+++|+|+||||||||+++|+|...+    ..|.+..+..... .........++++.
T Consensus        21 ~~~~~~~~~l~~vsl~i~~G--e~~~LlGpsGsGKSTLLr~IaGl~~p----~~G~I~~~g~~i~~~~~~~r~ig~vfQ~   94 (375)
T PRK09452         21 SKSFDGKEVISNLDLTINNG--EFLTLLGPSGCGKTTVLRLIAGFETP----DSGRIMLDGQDITHVPAENRHVNTVFQS   94 (375)
T ss_pred             EEEECCeEEEeeeEEEEeCC--CEEEEECCCCCcHHHHHHHHhCCCCC----CceEEEECCEECCCCCHHHCCEEEEecC
Confidence            56788888999999999999  99999999999999999999999874    3343333221110 00113457889999


Q ss_pred             CCCcCCCCCchHHH
Q 038053           81 PGLFDSSAGSEFVG   94 (231)
Q Consensus        81 pg~~~~~~~~~~~~   94 (231)
                      +.++++.++.+++.
T Consensus        95 ~~lfp~ltv~eNi~  108 (375)
T PRK09452         95 YALFPHMTVFENVA  108 (375)
T ss_pred             cccCCCCCHHHHHH
Confidence            99998877766653

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.18  E-value=1.4e-10  Score=89.82  Aligned_cols=137  Identities=9%  Similarity=0.050  Sum_probs=79.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+++|++|+|||||++.+........   .  .|.......... .+..+.+.||||...           +......
T Consensus        18 ~kv~lvG~~~vGKTsli~~~~~~~~~~~---~--~T~~~~~~~~~~-~~~~~~l~D~~G~~~-----------~~~~~~~   80 (182)
T PTZ00133         18 VRILMVGLDAAGKTTILYKLKLGEVVTT---I--PTIGFNVETVEY-KNLKFTMWDVGGQDK-----------LRPLWRH   80 (182)
T ss_pred             cEEEEEcCCCCCHHHHHHHHhcCCcccc---C--CccccceEEEEE-CCEEEEEEECCCCHh-----------HHHHHHH
Confidence            7899999999999999999964432111   1  122222222333 567788999999643           1111223


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH------hc----CCCCcHHHHHHHHHhhH----HHHHhhcc---------chhhhh
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA------AN----GGQPYTDEFLAELKRGA----TELRDQQA---------EVDSLK  160 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~----~~l~~~~~---------~i~~is  160 (231)
                      .+..+|++++|+|+++.-+..+..      ..    ...|++ .+.++.|...    ..+...+.         .+..+|
T Consensus        81 ~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~pii-lv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~S  159 (182)
T PTZ00133         81 YYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLL-VFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCC  159 (182)
T ss_pred             HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEE-EEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeee
Confidence            357889999999998432111111      11    123333 3445544210    12222211         234579


Q ss_pred             hhhHhhHHHHHHHHHHHH
Q 038053          161 EYSKQEISKLMGQMQESY  178 (231)
Q Consensus       161 ~~~~~~i~~l~~~i~~~~  178 (231)
                      |++|.|+++++..+.+..
T Consensus       160 a~tg~gv~e~~~~l~~~i  177 (182)
T PTZ00133        160 ATTAQGLYEGLDWLSANI  177 (182)
T ss_pred             CCCCCCHHHHHHHHHHHH
Confidence            999999999988876643

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.18  E-value=1.6e-11  Score=98.99  Aligned_cols=82  Identities=17%  Similarity=0.142  Sum_probs=58.2

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE----EeeCCcEEEE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT----VLKDGQVVNV   77 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~l   77 (231)
                      +++|+.+.++++++|++.+|  .+++|+|+||+|||||+++|+|...+    ..|.+.........    ........++
T Consensus        12 ~~~~~~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~p----~~G~i~~~g~~~~~~~~~~~~~~~i~~~   85 (237)
T PRK11614         12 SAHYGKIQALHEVSLHINQG--EIVTLIGANGAGKTTLLGTLCGDPRA----TSGRIVFDGKDITDWQTAKIMREAVAIV   85 (237)
T ss_pred             EEeeCCceeeeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHcCCCCC----CCceEEECCEecCCCCHHHHHHhCEEEe
Confidence            56788888999999999999  99999999999999999999999873    33433322211100    0012346677


Q ss_pred             EeCCCCcCCCCC
Q 038053           78 IDTPGLFDSSAG   89 (231)
Q Consensus        78 ~Dtpg~~~~~~~   89 (231)
                      ++.+.+++..+.
T Consensus        86 ~q~~~~~~~~tv   97 (237)
T PRK11614         86 PEGRRVFSRMTV   97 (237)
T ss_pred             ccCcccCCCCcH
Confidence            887777764443

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.18  E-value=1.5e-11  Score=100.14  Aligned_cols=88  Identities=15%  Similarity=0.046  Sum_probs=61.0

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcccc-ccCCCCcceeeeeee------EEeeCCcE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKA-SADSSGVTKTCEMKT------TVLKDGQV   74 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~-~~~~~~~t~~~~~~~------~~~~~~~~   74 (231)
                      ++.|++..++++++|++.+|  .+++|+|+||+|||||+++|+|...+.. .+..|.++.......      ... ....
T Consensus        11 ~~~~~~~~~l~~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~-~~~i   87 (253)
T PRK14267         11 RVYYGSNHVIKGVDLKIPQN--GVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEV-RREV   87 (253)
T ss_pred             EEEeCCeeeeecceEEEcCC--CEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHH-hhce
Confidence            56778788999999999999  9999999999999999999999976310 012333333221100      011 2456


Q ss_pred             EEEEeCCCCcCCCCCchH
Q 038053           75 VNVIDTPGLFDSSAGSEF   92 (231)
Q Consensus        75 ~~l~Dtpg~~~~~~~~~~   92 (231)
                      .++++.|.+++..+..++
T Consensus        88 ~~~~q~~~~~~~~tv~en  105 (253)
T PRK14267         88 GMVFQYPNPFPHLTIYDN  105 (253)
T ss_pred             eEEecCCccCCCCcHHHH
Confidence            788899888875554443

>cd04111 Rab39 Rab39 subfamily

Probab=99.18  E-value=1.3e-10  Score=92.14  Aligned_cols=142  Identities=13%  Similarity=0.058  Sum_probs=79.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeC--CcEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+++|.+|+|||||+|.+++......  ..+.+..+..........  ...+.+.||||...           +....
T Consensus         3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~--~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~-----------~~~~~   69 (211)
T cd04111           3 FRLIVIGDSTVGKSSLLKRFTEGRFAEV--SDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQER-----------FRSIT   69 (211)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCC--CCceeceEEEEEEEEECCCCEEEEEEEeCCcchh-----------HHHHH
Confidence            6899999999999999999998754211  112222222111222212  24577899999542           11111


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH--------hc-CCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------AN-GGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKEY  162 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~~  162 (231)
                      ...+..+|++++|+|+++.-+..+..        .. ...+....+.++.|..         ...+....+ +++.+|++
T Consensus        70 ~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak  149 (211)
T cd04111          70 RSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSAR  149 (211)
T ss_pred             HHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCC
Confidence            22346789999999998542222211        11 1112112233333310         012222222 56778999


Q ss_pred             hHhhHHHHHHHHHHHH
Q 038053          163 SKQEISKLMGQMQESY  178 (231)
Q Consensus       163 ~~~~i~~l~~~i~~~~  178 (231)
                      +|.|+.+++..+.+..
T Consensus       150 ~g~~v~e~f~~l~~~~  165 (211)
T cd04111         150 TGDNVEEAFELLTQEI  165 (211)
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            9999999998887644

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.18  E-value=1.5e-11  Score=104.41  Aligned_cols=86  Identities=16%  Similarity=0.011  Sum_probs=60.5

Q ss_pred             CCCCC----CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE------EeeC
Q 038053            2 SSGMG----ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT------VLKD   71 (231)
Q Consensus         2 ~~~~~----~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~------~~~~   71 (231)
                      ++.|+    ...++++++|++++|  .+++|+|+||||||||+++|+|...+    ..|.++........      ....
T Consensus         8 ~~~y~~~~~~~~il~~vsl~i~~G--ei~~iiG~nGsGKSTLlk~L~Gl~~p----~~G~I~~~g~~i~~~~~~~~~~~~   81 (343)
T PRK11153          8 SKVFPQGGRTIHALNNVSLHIPAG--EIFGVIGASGAGKSTLIRCINLLERP----TSGRVLVDGQDLTALSEKELRKAR   81 (343)
T ss_pred             EEEeCCCCCceEEEEeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCC----CceEEEECCEECCcCCHHHHHHHh
Confidence            45665    467999999999999  99999999999999999999999873    34433332211100      0002


Q ss_pred             CcEEEEEeCCCCcCCCCCchHH
Q 038053           72 GQVVNVIDTPGLFDSSAGSEFV   93 (231)
Q Consensus        72 ~~~~~l~Dtpg~~~~~~~~~~~   93 (231)
                      ....++++.|.+++..+..+++
T Consensus        82 ~~ig~v~q~~~l~~~~tv~eni  103 (343)
T PRK11153         82 RQIGMIFQHFNLLSSRTVFDNV  103 (343)
T ss_pred             cCEEEEeCCCccCCCCcHHHHH
Confidence            4567888988887755554443

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.18  E-value=1.1e-11  Score=105.78  Aligned_cols=90  Identities=13%  Similarity=0.141  Sum_probs=65.1

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEEeeCCcEEEEEe
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTVLKDGQVVNVID   79 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~D   79 (231)
                      +++.|++..+++++++++.+|  ..++|+|+||||||||+++|+|...+..  ..|.+....... ..........++++
T Consensus        11 l~~~~~~~~~l~~vsl~i~~G--e~~~llGpsGsGKSTLLr~iaGl~~p~~--~~G~i~~~g~~~~~~~~~~r~ig~vfQ   86 (362)
T TIGR03258        11 LRVAYGANTVLDDLSLEIEAG--ELLALIGKSGCGKTTLLRAIAGFVKAAG--LTGRIAIADRDLTHAPPHKRGLALLFQ   86 (362)
T ss_pred             EEEEECCeEEEeeeEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCC--CCEEEEECCEECCCCCHHHCCEEEEEC
Confidence            357788888999999999999  9999999999999999999999987432  003333222110 00001345788999


Q ss_pred             CCCCcCCCCCchHHH
Q 038053           80 TPGLFDSSAGSEFVG   94 (231)
Q Consensus        80 tpg~~~~~~~~~~~~   94 (231)
                      .+.+++..++.+++.
T Consensus        87 ~~~l~p~~tv~enl~  101 (362)
T TIGR03258        87 NYALFPHLKVEDNVA  101 (362)
T ss_pred             CcccCCCCcHHHHHH
Confidence            999998877766653

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.18  E-value=1.3e-11  Score=101.31  Aligned_cols=82  Identities=12%  Similarity=0.043  Sum_probs=57.4

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-e--EEeeCCcEEEEE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-T--TVLKDGQVVNVI   78 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~~l~   78 (231)
                      ++.|+++.++++++|++.+|  .+++|+|+||||||||+++|+|...+    ..|.+....... .  .........+++
T Consensus        18 ~~~~~~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~----~~G~i~~~g~~~~~~~~~~~~~~i~~v~   91 (265)
T PRK10575         18 SFRVPGRTLLHPLSLTFPAG--KVTGLIGHNGSGKSTLLKMLGRHQPP----SEGEILLDAQPLESWSSKAFARKVAYLP   91 (265)
T ss_pred             EEEECCEEEEeeeeeEEcCC--CEEEEECCCCCCHHHHHHHHcCCCCC----CCCEEEECCEehhhCCHHHHhhheEEec
Confidence            45677788999999999999  99999999999999999999999763    334333222110 0  000023466778


Q ss_pred             eCCCCcCCCCC
Q 038053           79 DTPGLFDSSAG   89 (231)
Q Consensus        79 Dtpg~~~~~~~   89 (231)
                      +.+++++..+.
T Consensus        92 q~~~~~~~~tv  102 (265)
T PRK10575         92 QQLPAAEGMTV  102 (265)
T ss_pred             cCCCCCCCccH
Confidence            87777664443

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.18  E-value=5.9e-11  Score=93.29  Aligned_cols=81  Identities=16%  Similarity=0.152  Sum_probs=56.9

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCC--ccccccCCCCcceeeeee-eE---EeeCCcEE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRK--AFKASADSSGVTKTCEMK-TT---VLKDGQVV   75 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~--~~~~~~~~~~~t~~~~~~-~~---~~~~~~~~   75 (231)
                      ++.|++..++++++|++.+|  .+++|+|+||+|||||+++|+|..  .    +..|.+..+.... ..   ........
T Consensus         7 ~~~~~~~~~l~~is~~i~~G--e~~~i~G~nGsGKStLl~~l~G~~~~~----p~~G~i~~~g~~~~~~~~~~~~~~~i~   80 (200)
T cd03217           7 HVSVGGKEILKGVNLTIKKG--EVHALMGPNGSGKSTLAKTIMGHPKYE----VTEGEILFKGEDITDLPPEERARLGIF   80 (200)
T ss_pred             EEEeCCEEeeeccceEECCC--cEEEEECCCCCCHHHHHHHHhCCCcCC----CCccEEEECCEECCcCCHHHHhhCcEE
Confidence            56777788999999999999  999999999999999999999984  3    2333333322110 00   00023367


Q ss_pred             EEEeCCCCcCCCC
Q 038053           76 NVIDTPGLFDSSA   88 (231)
Q Consensus        76 ~l~Dtpg~~~~~~   88 (231)
                      ++++.|.+++..+
T Consensus        81 ~v~q~~~~~~~~~   93 (200)
T cd03217          81 LAFQYPPEIPGVK   93 (200)
T ss_pred             EeecChhhccCcc
Confidence            7888887776443

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.17  E-value=2e-11  Score=98.15  Aligned_cols=85  Identities=20%  Similarity=0.072  Sum_probs=61.1

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEEeeCCcEEEEEeC
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTVLKDGQVVNVIDT   80 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~Dt   80 (231)
                      +++|+++.+++++++++.+|  .+++|+|+||+|||||+++|+|...+    ..|.++...... ..........++.+.
T Consensus         7 ~~~~~~~~il~~i~~~i~~G--e~~~i~G~nGsGKSTLl~~l~g~~~~----~~G~i~~~g~~~~~~~~~~~~i~~~~q~   80 (232)
T cd03300           7 SKFYGGFVALDGVSLDIKEG--EFFTLLGPSGCGKTTLLRLIAGFETP----TSGEILLDGKDITNLPPHKRPVNTVFQN   80 (232)
T ss_pred             EEEeCCeeeeccceEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCC----CceEEEECCEEcCcCChhhcceEEEecc
Confidence            56777788999999999999  99999999999999999999999873    344343322111 000013456778888


Q ss_pred             CCCcCCCCCchH
Q 038053           81 PGLFDSSAGSEF   92 (231)
Q Consensus        81 pg~~~~~~~~~~   92 (231)
                      |.+++..+..++
T Consensus        81 ~~~~~~~t~~~n   92 (232)
T cd03300          81 YALFPHLTVFEN   92 (232)
T ss_pred             cccCCCCcHHHH
Confidence            888765444333

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.17  E-value=1.8e-10  Score=89.16  Aligned_cols=136  Identities=14%  Similarity=0.076  Sum_probs=79.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+++|.+|||||||++.++.......   .  .|.......... .+..+.+.|+||...           +......
T Consensus        18 ~ki~ivG~~~~GKTsl~~~l~~~~~~~~---~--pt~g~~~~~~~~-~~~~~~i~D~~Gq~~-----------~~~~~~~   80 (181)
T PLN00223         18 MRILMVGLDAAGKTTILYKLKLGEIVTT---I--PTIGFNVETVEY-KNISFTVWDVGGQDK-----------IRPLWRH   80 (181)
T ss_pred             cEEEEECCCCCCHHHHHHHHccCCCccc---c--CCcceeEEEEEE-CCEEEEEEECCCCHH-----------HHHHHHH
Confidence            6899999999999999999975432111   1  121122222333 567789999999532           1111223


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH------hc----CCCCcHHHHHHHHHhh----HHHHHhhcc---------chhhhh
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA------AN----GGQPYTDEFLAELKRG----ATELRDQQA---------EVDSLK  160 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~----~~~l~~~~~---------~i~~is  160 (231)
                      .+..+|++++|+|.++.-+..+..      ..    ...|++ .+.++.|..    .+++.+.+.         .+..+|
T Consensus        81 ~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~pii-lv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~S  159 (181)
T PLN00223         81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL-VFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTC  159 (181)
T ss_pred             HhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEE-EEEECCCCCCCCCHHHHHHHhCccccCCCceEEEecc
Confidence            346789999999998432221111      11    122333 344554421    123333322         234579


Q ss_pred             hhhHhhHHHHHHHHHHH
Q 038053          161 EYSKQEISKLMGQMQES  177 (231)
Q Consensus       161 ~~~~~~i~~l~~~i~~~  177 (231)
                      |++|+|+.+++..+.+.
T Consensus       160 a~~g~gv~e~~~~l~~~  176 (181)
T PLN00223        160 ATSGEGLYEGLDWLSNN  176 (181)
T ss_pred             CCCCCCHHHHHHHHHHH
Confidence            99999999988877553

>cd04136 Rap_like Rap-like subfamily

Probab=99.17  E-value=5.2e-10  Score=84.42  Aligned_cols=137  Identities=18%  Similarity=0.188  Sum_probs=77.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+++|.+|||||||++.+++.....   ...+++.......... .+  ..+.+.||||.....        .+.   
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~---~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~--------~~~---   66 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVE---KYDPTIEDSYRKQIEV-DGQQCMLEILDTAGTEQFT--------AMR---   66 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCc---ccCCchhhhEEEEEEE-CCEEEEEEEEECCCccccc--------hHH---
Confidence            589999999999999999998764311   1111221111111222 33  345679999965421        111   


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH----------hcCCCCcHHHHHHHHHhh---------HHHHHhhc-cchhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA----------ANGGQPYTDEFLAELKRG---------ATELRDQQ-AEVDSLKE  161 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~---------~~~l~~~~-~~i~~is~  161 (231)
                      ...+..+|++++|+|.++.-+..+..          .....|++ .+.++.|..         ...+.... .+++.+|+
T Consensus        67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  145 (163)
T cd04136          67 DLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMV-LVGNKCDLEDERVVSREEGQALARQWGCPFYETSA  145 (163)
T ss_pred             HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECccccccceecHHHHHHHHHHcCCeEEEecC
Confidence            12235789999999998543322221          11234443 333443310         01222222 26778999


Q ss_pred             hhHhhHHHHHHHHHH
Q 038053          162 YSKQEISKLMGQMQE  176 (231)
Q Consensus       162 ~~~~~i~~l~~~i~~  176 (231)
                      ++|.|+.+++..+.+
T Consensus       146 ~~~~~v~~l~~~l~~  160 (163)
T cd04136         146 KSKINVDEVFADLVR  160 (163)
T ss_pred             CCCCCHHHHHHHHHH
Confidence            999999999887754

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.17  E-value=1.8e-11  Score=99.93  Aligned_cols=82  Identities=21%  Similarity=0.101  Sum_probs=57.7

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE---EeeCCcEEEEE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT---VLKDGQVVNVI   78 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~l~   78 (231)
                      ++.|+++.++++++|++.+|  .+++|+|+||+|||||+++|+|...+    ..|.+.........   ........+++
T Consensus         8 ~~~~~~~~il~~is~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~----~~G~i~~~g~~~~~~~~~~~~~~i~~~~   81 (256)
T TIGR03873         8 SWSAGGRLIVDGVDVTAPPG--SLTGLLGPNGSGKSTLLRLLAGALRP----DAGTVDLAGVDLHGLSRRARARRVALVE   81 (256)
T ss_pred             EEEECCEEEEeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHcCCCCC----CCCEEEECCEEcccCCHHHHhhheEEec
Confidence            56788889999999999999  99999999999999999999999873    34433332211100   00022466788


Q ss_pred             eCCCCcCCCCC
Q 038053           79 DTPGLFDSSAG   89 (231)
Q Consensus        79 Dtpg~~~~~~~   89 (231)
                      +.|.++...+.
T Consensus        82 q~~~~~~~~tv   92 (256)
T TIGR03873        82 QDSDTAVPLTV   92 (256)
T ss_pred             ccCccCCCCCH
Confidence            88766554443

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>cd01850 CDC_Septin CDC/Septin

Probab=99.17  E-value=1.4e-09  Score=89.60  Aligned_cols=96  Identities=24%  Similarity=0.250  Sum_probs=56.7

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCCccccccC------CCCcceeeeee--eEEeeCC--cEEEEEeCCCCcCCCCCc
Q 038053           21 NGKRTVVLLGRTGNGKSATGNSILGRKAFKASAD------SSGVTKTCEMK--TTVLKDG--QVVNVIDTPGLFDSSAGS   90 (231)
Q Consensus        21 g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~------~~~~t~~~~~~--~~~~~~~--~~~~l~Dtpg~~~~~~~~   90 (231)
                      |...+|+++|.+|+|||||+|+|++.........      ....|......  .... .+  ..+.++||||+.+.... 
T Consensus         2 g~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~-~g~~~~l~iiDTpGfgd~~~~-   79 (276)
T cd01850           2 GFQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEE-NGVKLKLTVIDTPGFGDNINN-   79 (276)
T ss_pred             CcEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEE-CCEEEEEEEEecCCccccccc-
Confidence            3457999999999999999999999875433110      01222222221  1222 33  46889999999875422 


Q ss_pred             hHHHHHHHHHHhh----------------h--cCCccEEEEEEECC
Q 038053           91 EFVGKEIVKRIGL----------------A--KGGIHAVLVVFSVR  118 (231)
Q Consensus        91 ~~~~~~~~~~~~~----------------~--~~~~~~il~vvd~~  118 (231)
                      ......+..++..                .  -.++|+++++++++
T Consensus        80 ~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~  125 (276)
T cd01850          80 SDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPT  125 (276)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCC
Confidence            1122222211110                1  13689999999987

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.17  E-value=3.7e-10  Score=83.98  Aligned_cols=59  Identities=31%  Similarity=0.388  Sum_probs=40.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFD   85 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~   85 (231)
                      .+|+++|.+|+|||||+|.|++... .. ...++++.......... .+  ..+.++|+||...
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~~~~-~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~   62 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLGNKF-IT-EYKPGTTRNYVTTVIEE-DGKTYKFNLLDTAGQED   62 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCC-cC-cCCCCceeeeeEEEEEE-CCEEEEEEEEECCCccc
Confidence            5899999999999999999999883 22 12333443333222333 44  5678899999543

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.17  E-value=1.3e-11  Score=101.29  Aligned_cols=80  Identities=11%  Similarity=0.036  Sum_probs=56.9

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eE--EeeCCcEEEEE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TT--VLKDGQVVNVI   78 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~--~~~~~~~~~l~   78 (231)
                      ++.|++..++++++|++.+|  .+++|+|+||||||||+++|+|...+    ..|.++...... ..  .......++++
T Consensus        14 ~~~~~~~~~l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~----~~G~i~~~g~~~~~~~~~~~~~~i~~v~   87 (265)
T PRK10253         14 TLGYGKYTVAENLTVEIPDG--HFTAIIGPNGCGKSTLLRTLSRLMTP----AHGHVWLDGEHIQHYASKEVARRIGLLA   87 (265)
T ss_pred             EEEECCEEEeeecceEECCC--CEEEEECCCCCCHHHHHHHHcCCCCC----CCcEEEECCEEhhhCCHHHHhhheEEee
Confidence            56788888999999999999  99999999999999999999999873    334333322110 00  00023467788


Q ss_pred             eCCCCcCCC
Q 038053           79 DTPGLFDSS   87 (231)
Q Consensus        79 Dtpg~~~~~   87 (231)
                      +.|.+++..
T Consensus        88 q~~~~~~~~   96 (265)
T PRK10253         88 QNATTPGDI   96 (265)
T ss_pred             ccCcCCCCC
Confidence            887766543

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.17  E-value=1.3e-11  Score=106.38  Aligned_cols=83  Identities=17%  Similarity=0.118  Sum_probs=59.4

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE---EeeCCcEEEE
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT---VLKDGQVVNV   77 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~l   77 (231)
                      ++++|+++.++++++|++.+|  .+++|+|+||||||||+++|+|...+    ..|.+.........   ........++
T Consensus         9 ls~~y~~~~vL~~vs~~i~~G--eiv~liGpNGaGKSTLLk~LaGll~p----~sG~I~l~G~~i~~~~~~~~~~~ig~v   82 (402)
T PRK09536          9 LSVEFGDTTVLDGVDLSVREG--SLVGLVGPNGAGKTTLLRAINGTLTP----TAGTVLVAGDDVEALSARAASRRVASV   82 (402)
T ss_pred             EEEEECCEEEEEeeEEEECCC--CEEEEECCCCchHHHHHHHHhcCCCC----CCcEEEECCEEcCcCCHHHHhcceEEE
Confidence            357888899999999999999  99999999999999999999999873    34434332211100   0012346778


Q ss_pred             EeCCCCcCCCCC
Q 038053           78 IDTPGLFDSSAG   89 (231)
Q Consensus        78 ~Dtpg~~~~~~~   89 (231)
                      ++.+.++...+.
T Consensus        83 ~q~~~l~~~~tv   94 (402)
T PRK09536         83 PQDTSLSFEFDV   94 (402)
T ss_pred             ccCCCCCCCCCH
Confidence            888877554433

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.17  E-value=2.1e-11  Score=98.30  Aligned_cols=84  Identities=24%  Similarity=0.223  Sum_probs=60.3

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-EEeeCCcEEEEEeC
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-TVLKDGQVVNVIDT   80 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~Dt   80 (231)
                      ++.|+.+++++++++++.+|  .+++|+|+||+|||||+++|+|...+    ..|.++.+..... ........+++++.
T Consensus         7 ~~~~~~~~il~~is~~i~~G--e~~~l~G~nGsGKSTLl~~i~G~~~~----~~G~i~i~g~~~~~~~~~~~~i~~~~q~   80 (237)
T TIGR00968         7 SKRFGSFQALDDVNLEVPTG--SLVALLGPSGSGKSTLLRIIAGLEQP----DSGRIRLNGQDATRVHARDRKIGFVFQH   80 (237)
T ss_pred             EEEECCeeeeeeEEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCC----CceEEEECCEEcCcCChhhcCEEEEecC
Confidence            45677888999999999999  99999999999999999999999763    3443333221110 00113456788888


Q ss_pred             CCCcCCCCCch
Q 038053           81 PGLFDSSAGSE   91 (231)
Q Consensus        81 pg~~~~~~~~~   91 (231)
                      |.+++..+..+
T Consensus        81 ~~~~~~~t~~e   91 (237)
T TIGR00968        81 YALFKHLTVRD   91 (237)
T ss_pred             hhhccCCcHHH
Confidence            88887544433

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.17  E-value=1.5e-10  Score=87.63  Aligned_cols=138  Identities=12%  Similarity=0.119  Sum_probs=77.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCC-ccccccCCCCcceeeee--eeEEe--eCCcEEEEEeCCCCcCCCCCchHHHHHHHH
Q 038053           25 TVVLLGRTGNGKSATGNSILGRK-AFKASADSSGVTKTCEM--KTTVL--KDGQVVNVIDTPGLFDSSAGSEFVGKEIVK   99 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~-~~~~~~~~~~~t~~~~~--~~~~~--~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~   99 (231)
                      +|+++|.+|||||||++.+.+.. .+.   .....|.....  .....  .....+.+.||||...           +..
T Consensus         2 ki~vvG~~~~GKtsl~~~l~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~   67 (164)
T cd04101           2 RCAVVGDPAVGKTAFVQMFHSNGAVFP---KNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQEL-----------YSD   67 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCcC---ccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHH-----------HHH
Confidence            69999999999999999998642 221   11112221111  11111  1335778999999432           111


Q ss_pred             HHhhhcCCccEEEEEEECCCCCCHHHHH--------hcCCCCcHHHHHHHHHhhH---------HHHHhhcc-chhhhhh
Q 038053          100 RIGLAKGGIHAVLVVFSVRSRFSQEEEA--------ANGGQPYTDEFLAELKRGA---------TELRDQQA-EVDSLKE  161 (231)
Q Consensus       100 ~~~~~~~~~~~il~vvd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~---------~~l~~~~~-~i~~is~  161 (231)
                      .....+..+|++++|+|+++.-+.....        .....|.+ .+.++.|...         ..+..... +++.+|+
T Consensus        68 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  146 (164)
T cd04101          68 MVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGV-LVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSA  146 (164)
T ss_pred             HHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEE-EEEECcccccccCCCHHHHHHHHHHcCCeEEEEeC
Confidence            2233457889999999998542222111        11123332 2334433100         12222222 5677899


Q ss_pred             hhHhhHHHHHHHHHHH
Q 038053          162 YSKQEISKLMGQMQES  177 (231)
Q Consensus       162 ~~~~~i~~l~~~i~~~  177 (231)
                      .++.|+.+++..+...
T Consensus       147 ~~~~gi~~l~~~l~~~  162 (164)
T cd04101         147 LRGVGYEEPFESLARA  162 (164)
T ss_pred             CCCCChHHHHHHHHHH
Confidence            9999999998877654

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.17  E-value=1.6e-11  Score=96.20  Aligned_cols=83  Identities=14%  Similarity=0.005  Sum_probs=55.5

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCC
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTP   81 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtp   81 (231)
                      ++.|+++.+++ +++++++|  .+++|+|+||+|||||+++|+|...+    ..|.+......... .......++.+.+
T Consensus         8 ~~~~~~~~l~~-vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~----~~G~i~~~g~~i~~-~~~~~~~~~~~~~   79 (195)
T PRK13541          8 QFNIEQKNLFD-LSITFLPS--AITYIKGANGCGKSSLLRMIAGIMQP----SSGNIYYKNCNINN-IAKPYCTYIGHNL   79 (195)
T ss_pred             eEEECCcEEEE-EEEEEcCC--cEEEEECCCCCCHHHHHHHHhcCCCC----CCcEEEECCcccCh-hhhhhEEeccCCc
Confidence            56777777776 99999999  99999999999999999999999873    34433332211000 0012345667777


Q ss_pred             CCcCCCCCchH
Q 038053           82 GLFDSSAGSEF   92 (231)
Q Consensus        82 g~~~~~~~~~~   92 (231)
                      ++++..+..++
T Consensus        80 ~~~~~~tv~~~   90 (195)
T PRK13541         80 GLKLEMTVFEN   90 (195)
T ss_pred             CCCccCCHHHH
Confidence            66654444333

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=99.16  E-value=6e-10  Score=87.47  Aligned_cols=151  Identities=19%  Similarity=0.241  Sum_probs=88.0

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCC-----CCcceeee-eeeEEeeC--CcEEEEEeCCCCcCCCCC
Q 038053           18 SSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADS-----SGVTKTCE-MKTTVLKD--GQVVNVIDTPGLFDSSAG   89 (231)
Q Consensus        18 i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~-----~~~t~~~~-~~~~~~~~--~~~~~l~Dtpg~~~~~~~   89 (231)
                      ...|-.+.|++||.+|.|||||+|.|+......++...     ...|+... ..+....+  ...+.++|||||.+.-..
T Consensus        41 mk~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN  120 (336)
T KOG1547|consen   41 MKTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINN  120 (336)
T ss_pred             HhccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCc
Confidence            34566689999999999999999999976543322111     11122221 11111112  346789999999864322


Q ss_pred             chHHHHHHHHHH----hhh--------------cCCccEEEEEEECCCCCCHHHHHhcCCCCcHHHHHHHHHhhHHHHHh
Q 038053           90 SEFVGKEIVKRI----GLA--------------KGGIHAVLVVFSVRSRFSQEEEAANGGQPYTDEFLAELKRGATELRD  151 (231)
Q Consensus        90 ~~~~~~~~~~~~----~~~--------------~~~~~~il~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  151 (231)
                       ++..+.+.+++    ...              ..+.|++++++.++         .....|.-+..+.++.    ++.+
T Consensus       121 -~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~pt---------GhsLrplDieflkrLt----~vvN  186 (336)
T KOG1547|consen  121 -DNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPT---------GHSLRPLDIEFLKRLT----EVVN  186 (336)
T ss_pred             -cchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCC---------CCccCcccHHHHHHHh----hhhe
Confidence             22222222221    111              14789999999998         5666777666655544    3344


Q ss_pred             hccchhhhhhhhHhhHHHHHHHHHHHHHHHH
Q 038053          152 QQAEVDSLKEYSKQEISKLMGQMQESYEDQI  182 (231)
Q Consensus       152 ~~~~i~~is~~~~~~i~~l~~~i~~~~~~~~  182 (231)
                      .++-|..-+..+=++...+.+.+.+.++.+-
T Consensus       187 vvPVIakaDtlTleEr~~FkqrI~~el~~~~  217 (336)
T KOG1547|consen  187 VVPVIAKADTLTLEERSAFKQRIRKELEKHG  217 (336)
T ss_pred             eeeeEeecccccHHHHHHHHHHHHHHHHhcC
Confidence            3333333444566677777777777665553

>cd04114 Rab30 Rab30 subfamily

Probab=99.16  E-value=1.4e-10  Score=88.24  Aligned_cols=137  Identities=17%  Similarity=0.125  Sum_probs=77.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcc--eeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVT--KTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVK   99 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t--~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~   99 (231)
                      .+|+++|++|||||||++.+++....    ...+.|  .+........ .+  ..+.+.|+||...           +..
T Consensus         8 ~~v~v~G~~~~GKSsli~~l~~~~~~----~~~~~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~-----------~~~   71 (169)
T cd04114           8 FKIVLIGNAGVGKTCLVRRFTQGLFP----PGQGATIGVDFMIKTVEI-KGEKIKLQIWDTAGQER-----------FRS   71 (169)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCC----CCCCCceeeEEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHH
Confidence            78999999999999999999865431    112222  1222222222 33  3466789999542           111


Q ss_pred             HHhhhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhhH---------HHHHhhc-cchhhhh
Q 038053          100 RIGLAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRGA---------TELRDQQ-AEVDSLK  160 (231)
Q Consensus       100 ~~~~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~---------~~l~~~~-~~i~~is  160 (231)
                      .....+..+|++++++|+++..+.....         .....|.+ .+.++.|...         ..+.... .++..+|
T Consensus        72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i-~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~S  150 (169)
T cd04114          72 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITI-LVGNKIDLAERREVSQQRAEEFSDAQDMYYLETS  150 (169)
T ss_pred             HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEE-EEEECcccccccccCHHHHHHHHHHcCCeEEEee
Confidence            1223456789999999998532221111         11122222 2334433110         1222211 2567789


Q ss_pred             hhhHhhHHHHHHHHHHH
Q 038053          161 EYSKQEISKLMGQMQES  177 (231)
Q Consensus       161 ~~~~~~i~~l~~~i~~~  177 (231)
                      +.+|.|+.+++..+...
T Consensus       151 a~~~~gv~~l~~~i~~~  167 (169)
T cd04114         151 AKESDNVEKLFLDLACR  167 (169)
T ss_pred             CCCCCCHHHHHHHHHHH
Confidence            99999999998887653

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.16  E-value=2.9e-10  Score=88.87  Aligned_cols=135  Identities=16%  Similarity=0.214  Sum_probs=76.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCC-cccccc-------------CCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRK-AFKASA-------------DSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAG   89 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~-~~~~~~-------------~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~   89 (231)
                      .+|+++|.+|+|||||+|.+++.. .+....             ...+.|.......... .+..+.++||||...    
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~-~~~~~~l~DtpG~~~----   77 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTY-KDTKINIVDTPGHAD----   77 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEE-CCEEEEEEECCCcHH----
Confidence            689999999999999999999632 111100             0123333333333333 567889999999754    


Q ss_pred             chHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhh---H----HHHHhhc----
Q 038053           90 SEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRG---A----TELRDQQ----  153 (231)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~---~----~~l~~~~----  153 (231)
                             +.......+..+|++++|+|++++.......     .....|++ .+++++|..   .    +++.+.+    
T Consensus        78 -------~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~i-iv~NK~Dl~~~~~~~~~~~~~~~~~~~~  149 (194)
T cd01891          78 -------FGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPI-VVINKIDRPDARPEEVVDEVFDLFIELG  149 (194)
T ss_pred             -------HHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEE-EEEECCCCCCCCHHHHHHHHHHHHHHhC
Confidence                   1112223346789999999998654333222     12233433 233443310   0    1122211    


Q ss_pred             ------c-chhhhhhhhHhhHHHHH
Q 038053          154 ------A-EVDSLKEYSKQEISKLM  171 (231)
Q Consensus       154 ------~-~i~~is~~~~~~i~~l~  171 (231)
                            + +++++|+++|.++.++.
T Consensus       150 ~~~~~~~~~iv~~Sa~~g~~~~~~~  174 (194)
T cd01891         150 ATEEQLDFPVLYASAKNGWASLNLE  174 (194)
T ss_pred             CccccCccCEEEeehhccccccccc
Confidence                  2 67788999998875543

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.16  E-value=3.8e-11  Score=91.24  Aligned_cols=87  Identities=21%  Similarity=0.106  Sum_probs=60.4

Q ss_pred             CCCCCCC-cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeee----e--eEEeeCCc
Q 038053            1 MSSGMGE-RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEM----K--TTVLKDGQ   73 (231)
Q Consensus         1 ~~~~~~~-~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~----~--~~~~~~~~   73 (231)
                      ++|.|+. ..+|++++|.+++|  ..+-++|++|||||||+++|++...+..    |.+......    .  ........
T Consensus         7 V~k~Y~~g~~aL~~vs~~i~~G--ef~fl~GpSGAGKSTllkLi~~~e~pt~----G~i~~~~~dl~~l~~~~iP~LRR~   80 (223)
T COG2884           7 VSKAYPGGREALRDVSFHIPKG--EFVFLTGPSGAGKSTLLKLIYGEERPTR----GKILVNGHDLSRLKGREIPFLRRQ   80 (223)
T ss_pred             hhhhcCCCchhhhCceEeecCc--eEEEEECCCCCCHHHHHHHHHhhhcCCC----ceEEECCeecccccccccchhhhe
Confidence            4677864 44999999999999  9999999999999999999999998443    333321110    0  11111456


Q ss_pred             EEEEEeCCCCcCCCCCchHH
Q 038053           74 VVNVIDTPGLFDSSAGSEFV   93 (231)
Q Consensus        74 ~~~l~Dtpg~~~~~~~~~~~   93 (231)
                      .+++++.--+.+..++.+++
T Consensus        81 IGvVFQD~rLL~~~tvyeNV  100 (223)
T COG2884          81 IGVVFQDFRLLPDRTVYENV  100 (223)
T ss_pred             eeeEeeeccccccchHhhhh
Confidence            67777776666655555443

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.16  E-value=2.9e-11  Score=98.37  Aligned_cols=89  Identities=13%  Similarity=0.091  Sum_probs=60.2

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccc-cCCCCcceeeeeee-----EEeeCCcEE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKAS-ADSSGVTKTCEMKT-----TVLKDGQVV   75 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~-~~~~~~t~~~~~~~-----~~~~~~~~~   75 (231)
                      ++.|++++++++++|++.+|  .+++|+|+||+|||||+++|+|...+... ...|.+........     .........
T Consensus        11 ~~~~~~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~   88 (252)
T PRK14272         11 NIYYGDKQAVKNVNLDVQRG--TVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVG   88 (252)
T ss_pred             EEEECCEEeeccceEEEcCC--CEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeE
Confidence            56788888999999999999  99999999999999999999998753110 01233332221100     001133567


Q ss_pred             EEEeCCCCcCCCCCchH
Q 038053           76 NVIDTPGLFDSSAGSEF   92 (231)
Q Consensus        76 ~l~Dtpg~~~~~~~~~~   92 (231)
                      ++++.|.+++..+..++
T Consensus        89 ~~~q~~~~~~~~t~~en  105 (252)
T PRK14272         89 MVFQKPNPFPTMSVFDN  105 (252)
T ss_pred             EEeccCccCcCCCHHHH
Confidence            88888888775554443

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.16  E-value=1.3e-10  Score=90.01  Aligned_cols=78  Identities=18%  Similarity=0.159  Sum_probs=53.7

Q ss_pred             cCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-E---EeeCCcEEEEEeCC---C
Q 038053           10 IDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-T---VLKDGQVVNVIDTP---G   82 (231)
Q Consensus        10 ~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-~---~~~~~~~~~l~Dtp---g   82 (231)
                      +++++++++++|  ..++|+|+||+|||||+++|+|...+    ..|.++....... .   ........++++.|   +
T Consensus        15 ~l~~vs~~i~~G--~~~~i~G~nGsGKSTLl~~l~G~~~~----~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~   88 (182)
T cd03215          15 AVRDVSFEVRAG--EIVGIAGLVGNGQTELAEALFGLRPP----ASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREG   88 (182)
T ss_pred             eecceEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCC----CCceEEECCEECCccCHHHHHhCCeEEecCCcccCc
Confidence            899999999999  99999999999999999999999873    4444443321110 0   00123567777774   4


Q ss_pred             CcCCCCCchHH
Q 038053           83 LFDSSAGSEFV   93 (231)
Q Consensus        83 ~~~~~~~~~~~   93 (231)
                      +++..+..+++
T Consensus        89 ~~~~~t~~e~l   99 (182)
T cd03215          89 LVLDLSVAENI   99 (182)
T ss_pred             ccCCCcHHHHH
Confidence            66555554443

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.16  E-value=2.3e-11  Score=98.82  Aligned_cols=90  Identities=17%  Similarity=0.085  Sum_probs=60.3

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcccc-ccCCCCcceeeeee-e--EEeeCCcEEEE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKA-SADSSGVTKTCEMK-T--TVLKDGQVVNV   77 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~-~~~~~~~t~~~~~~-~--~~~~~~~~~~l   77 (231)
                      ++.|++..++++++|++++|  .+++|+|+||||||||+++|+|...+.. .+..|.+....... .  .........++
T Consensus        10 ~~~~~~~~~l~~is~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v   87 (250)
T PRK14247         10 KVSFGQVEVLDGVNLEIPDN--TITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMV   87 (250)
T ss_pred             EEEECCeeeeecceeEEcCC--CEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEE
Confidence            56788888999999999999  9999999999999999999999875210 01223222221100 0  00012456788


Q ss_pred             EeCCCCcCCCCCchHH
Q 038053           78 IDTPGLFDSSAGSEFV   93 (231)
Q Consensus        78 ~Dtpg~~~~~~~~~~~   93 (231)
                      ++.|.+++..+..+++
T Consensus        88 ~q~~~~~~~~tv~enl  103 (250)
T PRK14247         88 FQIPNPIPNLSIFENV  103 (250)
T ss_pred             eccCccCCCCcHHHHH
Confidence            9988877655544443

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.16  E-value=2.3e-11  Score=93.23  Aligned_cols=84  Identities=20%  Similarity=0.231  Sum_probs=64.1

Q ss_pred             CCCCCCCcc-cCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeee---eeEEeeCCcEEE
Q 038053            1 MSSGMGERV-IDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEM---KTTVLKDGQVVN   76 (231)
Q Consensus         1 ~~~~~~~~~-~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~---~~~~~~~~~~~~   76 (231)
                      ++|+|+... +++|++|++..|  .++||+|+|||||||+++.|.+...    |+.|.++.+.-.   ..... ....++
T Consensus         7 l~K~y~~~v~AvrdVSF~ae~G--ei~GlLG~NGAGKTT~LRmiatlL~----P~~G~v~idg~d~~~~p~~v-rr~IGV   79 (245)
T COG4555           7 LTKSYGSKVQAVRDVSFEAEEG--EITGLLGENGAGKTTLLRMIATLLI----PDSGKVTIDGVDTVRDPSFV-RRKIGV   79 (245)
T ss_pred             hhhhccCHHhhhhheeEEeccc--eEEEEEcCCCCCchhHHHHHHHhcc----CCCceEEEeecccccChHHH-hhhcce
Confidence            478898776 899999999999  9999999999999999999999988    455555543211   11111 456677


Q ss_pred             EEeCCCCcCCCCCch
Q 038053           77 VIDTPGLFDSSAGSE   91 (231)
Q Consensus        77 l~Dtpg~~~~~~~~~   91 (231)
                      +.+.-|+|...+..+
T Consensus        80 l~~e~glY~RlT~rE   94 (245)
T COG4555          80 LFGERGLYARLTARE   94 (245)
T ss_pred             ecCCcChhhhhhHHH
Confidence            888899998555443

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.16  E-value=3.9e-11  Score=104.79  Aligned_cols=137  Identities=15%  Similarity=0.147  Sum_probs=84.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccc--------------cc---------------CCCCcceeeeeeeEEeeCCcE
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKA--------------SA---------------DSSGVTKTCEMKTTVLKDGQV   74 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~--------------~~---------------~~~~~t~~~~~~~~~~~~~~~   74 (231)
                      .+|+++|++|+|||||++.|+.......              +.               ...|+|.+.......+ .+..
T Consensus         7 ~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~-~~~~   85 (425)
T PRK12317          7 LNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET-DKYY   85 (425)
T ss_pred             EEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec-CCeE
Confidence            7899999999999999999985543221              00               1467777776666655 6788


Q ss_pred             EEEEeCCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCC--CCCHHHHH-----hcCCCCcHHHHHHHHHhh--
Q 038053           75 VNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRS--RFSQEEEA-----ANGGQPYTDEFLAELKRG--  145 (231)
Q Consensus        75 ~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~--~~~~~~~~-----~~~~~~~~~~~~~~~~~~--  145 (231)
                      +.++||||..+.           ...+......+|++++|+|+++  .+......     .....+.++.++|++|..  
T Consensus        86 i~liDtpG~~~~-----------~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~  154 (425)
T PRK12317         86 FTIVDCPGHRDF-----------VKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNY  154 (425)
T ss_pred             EEEEECCCcccc-----------hhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccc
Confidence            999999996431           1112223467899999999986  44433322     112222222233443310  


Q ss_pred             --------HHHHHhhc---------cchhhhhhhhHhhHHHHHH
Q 038053          146 --------ATELRDQQ---------AEVDSLKEYSKQEISKLMG  172 (231)
Q Consensus       146 --------~~~l~~~~---------~~i~~is~~~~~~i~~l~~  172 (231)
                              .+++.+.+         -+++++|+++|.|+.++..
T Consensus       155 ~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~  198 (425)
T PRK12317        155 DEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE  198 (425)
T ss_pred             cHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence                    01222221         1477889999999987553

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.16  E-value=1.4e-11  Score=97.59  Aligned_cols=83  Identities=16%  Similarity=0.120  Sum_probs=58.3

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee---EEeeCCcEEEEE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT---TVLKDGQVVNVI   78 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~l~   78 (231)
                      ++.|++.+++++++|++.+|   +++|+|+||||||||+++|+|...+    ..|.+........   ... .....+++
T Consensus         7 ~~~~~~~~~l~~vs~~i~~g---~~~i~G~nGsGKSTLl~~l~Gl~~~----~~G~i~~~g~~~~~~~~~~-~~~i~~~~   78 (211)
T cd03264           7 TKRYGKKRALDGVSLTLGPG---MYGLLGPNGAGKTTLMRILATLTPP----SSGTIRIDGQDVLKQPQKL-RRRIGYLP   78 (211)
T ss_pred             EEEECCEEEEcceeEEEcCC---cEEEECCCCCCHHHHHHHHhCCCCC----CccEEEECCCccccchHHH-HhheEEec
Confidence            56677778999999999997   8999999999999999999999773    3333332211000   011 34567788


Q ss_pred             eCCCCcCCCCCchH
Q 038053           79 DTPGLFDSSAGSEF   92 (231)
Q Consensus        79 Dtpg~~~~~~~~~~   92 (231)
                      +.|.+++..+..++
T Consensus        79 q~~~~~~~~tv~~~   92 (211)
T cd03264          79 QEFGVYPNFTVREF   92 (211)
T ss_pred             CCCcccccCCHHHH
Confidence            88887765544443

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.16  E-value=7.9e-11  Score=87.76  Aligned_cols=45  Identities=29%  Similarity=0.361  Sum_probs=41.6

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      +++|++.+++++++|.+++|  .+++|+|+||+|||||+++|+|...
T Consensus         7 ~~~~~~~~~l~~~~~~~~~G--e~~~i~G~nGsGKStLl~~l~G~~~   51 (144)
T cd03221           7 SKTYGGKLLLKDISLTINPG--DRIGLVGRNGAGKSTLLKLIAGELE   51 (144)
T ss_pred             EEEECCceEEEeeEEEECCC--CEEEEECCCCCCHHHHHHHHcCCCC
Confidence            45677778999999999999  9999999999999999999999987

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>cd04125 RabA_like RabA-like subfamily

Probab=99.16  E-value=1.6e-10  Score=89.74  Aligned_cols=139  Identities=16%  Similarity=0.100  Sum_probs=78.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      +|+++|.+|+|||||+|.+++......  ..+....+........ .+  ..+.+.||||...           +.....
T Consensus         2 ki~v~G~~~vGKSsli~~~~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~g~~~-----------~~~~~~   67 (188)
T cd04125           2 KVVIIGDYGVGKSSLLKRFTEDEFSES--TKSTIGVDFKIKTVYI-ENKIIKLQIWDTNGQER-----------FRSLNN   67 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCC--CCCceeeEEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHhhHH
Confidence            699999999999999999998764211  1111111111122222 22  3466899999543           111223


Q ss_pred             hhcCCccEEEEEEECCCCCCHHHHH--------h-cCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhhhh
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEEEA--------A-NGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKEYS  163 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~~~  163 (231)
                      ..+..+|++++|+|+++.-+.....        . ....|++ .+.++.|..         ...+..... +++.+|+++
T Consensus        68 ~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~i-vv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~  146 (188)
T cd04125          68 SYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKV-IVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQ  146 (188)
T ss_pred             HHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEE-EEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCC
Confidence            3457889999999998543322211        1 1122322 233333211         012222222 577889999


Q ss_pred             HhhHHHHHHHHHHHH
Q 038053          164 KQEISKLMGQMQESY  178 (231)
Q Consensus       164 ~~~i~~l~~~i~~~~  178 (231)
                      +.|+++++..+....
T Consensus       147 ~~~i~~~f~~l~~~~  161 (188)
T cd04125         147 SINVEEAFILLVKLI  161 (188)
T ss_pred             CCCHHHHHHHHHHHH
Confidence            999999888876654

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PLN03110 Rab GTPase; Provisional

Probab=99.16  E-value=2.7e-10  Score=90.66  Aligned_cols=140  Identities=14%  Similarity=0.139  Sum_probs=80.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+++|++|+|||||++.+++......  ..+....+........ .+  ..+.+.||||...           +....
T Consensus        13 ~Ki~ivG~~~vGKStLi~~l~~~~~~~~--~~~t~g~~~~~~~v~~-~~~~~~l~l~Dt~G~~~-----------~~~~~   78 (216)
T PLN03110         13 FKIVLIGDSGVGKSNILSRFTRNEFCLE--SKSTIGVEFATRTLQV-EGKTVKAQIWDTAGQER-----------YRAIT   78 (216)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCceeEEEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHHHH
Confidence            6899999999999999999998764211  1111111211122222 22  3677889999432           11222


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKEY  162 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~~  162 (231)
                      ...+..++++++|+|+++.-+.....         .....|++ .+.++.|..         ...+..... +++.+|++
T Consensus        79 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-iv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~  157 (216)
T PLN03110         79 SAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIM-MAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSAL  157 (216)
T ss_pred             HHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEE-EEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCC
Confidence            33446789999999998543322211         11223333 233333310         012222222 67889999


Q ss_pred             hHhhHHHHHHHHHHHH
Q 038053          163 SKQEISKLMGQMQESY  178 (231)
Q Consensus       163 ~~~~i~~l~~~i~~~~  178 (231)
                      ++.|+++++..+....
T Consensus       158 ~g~~v~~lf~~l~~~i  173 (216)
T PLN03110        158 EATNVEKAFQTILLEI  173 (216)
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            9999999888876543

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.16  E-value=1.6e-11  Score=105.27  Aligned_cols=87  Identities=14%  Similarity=0.089  Sum_probs=65.2

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-EEeeCCcEEEEEeC
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-TVLKDGQVVNVIDT   80 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~Dt   80 (231)
                      ++.|++..++++++|++.+|  ..++|+|+||||||||+++|+|...+    ..|.+..+..... .........++++.
T Consensus        26 ~~~~~~~~~l~~vsl~i~~G--e~~~llGpsGsGKSTLLr~IaGl~~p----~~G~I~i~g~~i~~~~~~~r~ig~vfQ~   99 (377)
T PRK11607         26 TKSFDGQHAVDDVSLTIYKG--EIFALLGASGCGKSTLLRMLAGFEQP----TAGQIMLDGVDLSHVPPYQRPINMMFQS   99 (377)
T ss_pred             EEEECCEEEEeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCC----CceEEEECCEECCCCCHHHCCEEEEeCC
Confidence            56778778999999999999  99999999999999999999999874    3443333221110 00113457889999


Q ss_pred             CCCcCCCCCchHHH
Q 038053           81 PGLFDSSAGSEFVG   94 (231)
Q Consensus        81 pg~~~~~~~~~~~~   94 (231)
                      +.++++.++.+++.
T Consensus       100 ~~lfp~ltv~eNi~  113 (377)
T PRK11607        100 YALFPHMTVEQNIA  113 (377)
T ss_pred             CccCCCCCHHHHHH
Confidence            99999887766653

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.16  E-value=1.5e-11  Score=100.24  Aligned_cols=80  Identities=15%  Similarity=0.057  Sum_probs=56.0

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eE--EeeCCcEEEEE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TT--VLKDGQVVNVI   78 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~--~~~~~~~~~l~   78 (231)
                      +++|+++.+|++++|++.+|  .+++|+|+||+|||||+++|+|...+    ..|.+....... ..  ........+++
T Consensus         9 ~~~~~~~~il~~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~----~~G~i~~~g~~~~~~~~~~~~~~i~~~~   82 (255)
T PRK11231          9 TVGYGTKRILNDLSLSLPTG--KITALIGPNGCGKSTLLKCFARLLTP----QSGTVFLGDKPISMLSSRQLARRLALLP   82 (255)
T ss_pred             EEEECCEEEEeeeeeEEcCC--cEEEEECCCCCCHHHHHHHHhCCcCC----CCcEEEECCEEhHHCCHHHHhhheEEec
Confidence            56788888999999999999  99999999999999999999998763    333333222110 00  00023456777


Q ss_pred             eCCCCcCCC
Q 038053           79 DTPGLFDSS   87 (231)
Q Consensus        79 Dtpg~~~~~   87 (231)
                      +.+.+++..
T Consensus        83 q~~~~~~~~   91 (255)
T PRK11231         83 QHHLTPEGI   91 (255)
T ss_pred             ccCCCCCCc
Confidence            777666543

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.16  E-value=3.7e-11  Score=107.79  Aligned_cols=77  Identities=13%  Similarity=0.136  Sum_probs=58.1

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeC
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDT   80 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dt   80 (231)
                      +++.|+++++|++++|++.+|  .+++|+|+||||||||+++|+|...    +..|.+....        .....++++.
T Consensus         7 ls~~~~~~~il~~vsl~i~~G--e~~~liG~NGsGKSTLl~~l~Gl~~----p~~G~i~~~~--------~~~i~~~~q~   72 (530)
T PRK15064          7 ITMQFGAKPLFENISVKFGGG--NRYGLIGANGCGKSTFMKILGGDLE----PSAGNVSLDP--------NERLGKLRQD   72 (530)
T ss_pred             EEEEeCCcEeEeCCEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCC----CCCceEEecC--------CCEEEEEecc
Confidence            367788889999999999999  9999999999999999999999886    3334333211        1235667787


Q ss_pred             CCCcCCCCCch
Q 038053           81 PGLFDSSAGSE   91 (231)
Q Consensus        81 pg~~~~~~~~~   91 (231)
                      |.+++..++.+
T Consensus        73 ~~~~~~~tv~e   83 (530)
T PRK15064         73 QFAFEEFTVLD   83 (530)
T ss_pred             CCcCCCCcHHH
Confidence            77666544433

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.15  E-value=2.5e-11  Score=98.11  Aligned_cols=78  Identities=18%  Similarity=0.086  Sum_probs=56.3

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-e--EEeeCCcEEEEE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-T--TVLKDGQVVNVI   78 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~--~~~~~~~~~~l~   78 (231)
                      ++.|+++.++++++|++.+|  .+++|+|+||||||||+++|+|...+    ..|.++...... .  .........+++
T Consensus        10 ~~~~~~~~~l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p----~~G~i~~~g~~i~~~~~~~~~~~i~~~~   83 (241)
T PRK14250         10 SYSSFGKEILKDISVKFEGG--AIYTIVGPSGAGKSTLIKLINRLIDP----TEGSILIDGVDIKTIDVIDLRRKIGMVF   83 (241)
T ss_pred             EEEeCCeeeeeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CCcEEEECCEEhhhcChHHhhhcEEEEe
Confidence            56677788999999999999  99999999999999999999999763    344343322110 0  000123467788


Q ss_pred             eCCCCcC
Q 038053           79 DTPGLFD   85 (231)
Q Consensus        79 Dtpg~~~   85 (231)
                      +.|.+++
T Consensus        84 q~~~~~~   90 (241)
T PRK14250         84 QQPHLFE   90 (241)
T ss_pred             cCchhch
Confidence            8877664

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.15  E-value=2.5e-11  Score=102.71  Aligned_cols=86  Identities=15%  Similarity=0.027  Sum_probs=62.0

Q ss_pred             CCCCC----CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEE------eeC
Q 038053            2 SSGMG----ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTV------LKD   71 (231)
Q Consensus         2 ~~~~~----~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~------~~~   71 (231)
                      ++.|+    ...++++++|++++|  .+++|+|+||||||||+++|+|...+    +.|.+..+.......      ...
T Consensus         8 sk~y~~~~~~~~~L~~vsl~i~~G--ei~gIiG~sGaGKSTLlr~I~gl~~p----~~G~I~i~G~~i~~~~~~~l~~~r   81 (343)
T TIGR02314         8 TKVFHQGTKTIQALNNVSLHVPAG--QIYGVIGASGAGKSTLIRCVNLLERP----TSGSVIVDGQDLTTLSNSELTKAR   81 (343)
T ss_pred             EEEECCCCcceEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCC----CceEEEECCEECCcCCHHHHHHHh
Confidence            55664    247999999999999  99999999999999999999999873    444444332211000      013


Q ss_pred             CcEEEEEeCCCCcCCCCCchHH
Q 038053           72 GQVVNVIDTPGLFDSSAGSEFV   93 (231)
Q Consensus        72 ~~~~~l~Dtpg~~~~~~~~~~~   93 (231)
                      ....++++.+.+++..++.+++
T Consensus        82 ~~Ig~v~Q~~~l~~~~tv~eni  103 (343)
T TIGR02314        82 RQIGMIFQHFNLLSSRTVFGNV  103 (343)
T ss_pred             cCEEEEECCccccccCcHHHHH
Confidence            4678899999988766665544

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.15  E-value=2.5e-11  Score=96.10  Aligned_cols=75  Identities=23%  Similarity=0.152  Sum_probs=53.7

Q ss_pred             CCCCCC--cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE---EeeCCcEEE
Q 038053            2 SSGMGE--RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT---VLKDGQVVN   76 (231)
Q Consensus         2 ~~~~~~--~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~   76 (231)
                      ++.|++  ..++++++|++.+|  .+++|+|+||||||||+++|+|...    +..|.++........   ........+
T Consensus         6 ~~~~~~~~~~il~~vs~~i~~G--~~~~l~G~nGsGKSTLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~~~~~i~~   79 (211)
T cd03225           6 SFSYPDGARPALDDISLTIKKG--EFVLIVGPNGSGKSTLLRLLNGLLG----PTSGEVLVDGKDLTKLSLKELRRKVGL   79 (211)
T ss_pred             EEecCCCCeeeecceEEEEcCC--cEEEEECCCCCCHHHHHHHHhcCCC----CCCceEEECCEEcccCCHHHHHhhceE
Confidence            566776  78999999999999  9999999999999999999999987    344444332211100   000234567


Q ss_pred             EEeCCC
Q 038053           77 VIDTPG   82 (231)
Q Consensus        77 l~Dtpg   82 (231)
                      +++.|.
T Consensus        80 ~~q~~~   85 (211)
T cd03225          80 VFQNPD   85 (211)
T ss_pred             EecChh
Confidence            888775

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.15  E-value=2.3e-11  Score=99.60  Aligned_cols=87  Identities=15%  Similarity=0.071  Sum_probs=59.8

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE--------EeeCCc
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT--------VLKDGQ   73 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~--------~~~~~~   73 (231)
                      ++.|+++.++++++|++.+|  .+++|+|+||||||||+++|+|...+..+ ..|.++........        ......
T Consensus        11 ~~~~~~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~p~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~~~   87 (262)
T PRK09984         11 AKTFNQHQALHAVDLNIHHG--EMVALLGPSGSGKSTLLRHLSGLITGDKS-AGSHIELLGRTVQREGRLARDIRKSRAN   87 (262)
T ss_pred             EEEeCCeEEEecceEEEcCC--cEEEEECCCCCCHHHHHHHHhccCCCCCC-CceEEEECCEecccccccchhHHHHHhh
Confidence            56788889999999999999  99999999999999999999999863210 12333322211000        000234


Q ss_pred             EEEEEeCCCCcCCCCCch
Q 038053           74 VVNVIDTPGLFDSSAGSE   91 (231)
Q Consensus        74 ~~~l~Dtpg~~~~~~~~~   91 (231)
                      ..++++.|.+++..+..+
T Consensus        88 i~~~~q~~~~~~~~tv~e  105 (262)
T PRK09984         88 TGYIFQQFNLVNRLSVLE  105 (262)
T ss_pred             eEEEccccccccCCcHHH
Confidence            678888888877544433

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.15  E-value=2.8e-11  Score=98.39  Aligned_cols=45  Identities=31%  Similarity=0.418  Sum_probs=42.0

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      ++.|+++.++++++|++++|  .+++|+|+||||||||+++|+|...
T Consensus        11 ~~~~~~~~vl~~vs~~i~~G--e~~~I~G~NGsGKSTLl~~i~Gl~~   55 (251)
T PRK09544         11 SVSFGQRRVLSDVSLELKPG--KILTLLGPNGAGKSTLVRVVLGLVA   55 (251)
T ss_pred             EEEECCceEEEeEEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCC
Confidence            56777788999999999999  9999999999999999999999976

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=99.14  E-value=1.2e-09  Score=91.31  Aligned_cols=89  Identities=19%  Similarity=0.199  Sum_probs=71.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEee-----------------CCcEEEEEeCCCCcCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLK-----------------DGQVVNVIDTPGLFDS   86 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~l~Dtpg~~~~   86 (231)
                      ..+||||.||+|||||||+|+..... . .+.|.+|.++..+.....                 ....+-++|.+|+-++
T Consensus         3 l~~GIVGlPNVGKSTlFnAlT~~~a~-~-aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G   80 (372)
T COG0012           3 LKIGIVGLPNVGKSTLFNALTKAGAE-I-ANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG   80 (372)
T ss_pred             ceeEEecCCCCcHHHHHHHHHcCCcc-c-cCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence            68999999999999999999998842 2 468888888776653321                 1234678999999999


Q ss_pred             CCCchHHHHHHHHHHhhhcCCccEEEEEEECC
Q 038053           87 SAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVR  118 (231)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~  118 (231)
                      .+..+.++..++..+..    +|++++||++.
T Consensus        81 As~GeGLGNkFL~~IRe----vdaI~hVVr~f  108 (372)
T COG0012          81 ASKGEGLGNKFLDNIRE----VDAIIHVVRCF  108 (372)
T ss_pred             cccCCCcchHHHHhhhh----cCeEEEEEEec
Confidence            99999999999887754    59999999986

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.14  E-value=3.6e-11  Score=97.86  Aligned_cols=89  Identities=17%  Similarity=0.110  Sum_probs=60.2

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc-ccccCCCCcceeeeeee-----EEeeCCcEE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF-KASADSSGVTKTCEMKT-----TVLKDGQVV   75 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~-~~~~~~~~~t~~~~~~~-----~~~~~~~~~   75 (231)
                      +++|+++.+++++++++++|  .+++|+|+||||||||+++|+|...+ ...+..|.++.......     .........
T Consensus        11 ~~~~~~~~~l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~   88 (252)
T PRK14256         11 NVHFGKNHAVKDVSMDFPEN--SVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVG   88 (252)
T ss_pred             EEEeCCeeEEecceEEEcCC--CEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEE
Confidence            56788888999999999999  99999999999999999999998641 00011232332221110     001134567


Q ss_pred             EEEeCCCCcCCCCCchH
Q 038053           76 NVIDTPGLFDSSAGSEF   92 (231)
Q Consensus        76 ~l~Dtpg~~~~~~~~~~   92 (231)
                      ++++.+.+++..+..++
T Consensus        89 ~~~q~~~~~~~~tv~en  105 (252)
T PRK14256         89 MVFQKPNPFPAMSIYDN  105 (252)
T ss_pred             EEecCCCCCCcCcHHHH
Confidence            88998888775554433

>cd00157 Rho Rho (Ras homology) family

Probab=99.14  E-value=9.4e-10  Score=83.67  Aligned_cols=137  Identities=15%  Similarity=0.093  Sum_probs=76.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEe-eCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      +|+++|.+|||||||+|.+++......  ..+.. .......... .....+.++||||.....        .+   ...
T Consensus         2 ki~i~G~~~~GKSsli~~l~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~l~~~D~~g~~~~~--------~~---~~~   67 (171)
T cd00157           2 KIVVVGDGAVGKTCLLISYTTGKFPTE--YVPTV-FDNYSATVTVDGKQVNLGLWDTAGQEEYD--------RL---RPL   67 (171)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCC--CCCce-eeeeEEEEEECCEEEEEEEEeCCCccccc--------cc---chh
Confidence            799999999999999999998864211  11111 1111111111 123457799999976421        01   112


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhhH--------------------HHHHhhcc
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRGA--------------------TELRDQQA  154 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~--------------------~~l~~~~~  154 (231)
                      .+..+|++++++|.++..+.....         .....|++ .+.++.|...                    ..+....+
T Consensus        68 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  146 (171)
T cd00157          68 SYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPII-LVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIG  146 (171)
T ss_pred             hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEE-EEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhC
Confidence            236789999999998432222211         12234443 2333333110                    11111111


Q ss_pred             --chhhhhhhhHhhHHHHHHHHHH
Q 038053          155 --EVDSLKEYSKQEISKLMGQMQE  176 (231)
Q Consensus       155 --~i~~is~~~~~~i~~l~~~i~~  176 (231)
                        +++.+|+.++.|+.+++..+..
T Consensus       147 ~~~~~~~Sa~~~~gi~~l~~~i~~  170 (171)
T cd00157         147 AIGYMECSALTQEGVKEVFEEAIR  170 (171)
T ss_pred             CeEEEEeecCCCCCHHHHHHHHhh
Confidence              5677899999999999887653

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.14  E-value=2.2e-11  Score=99.96  Aligned_cols=83  Identities=19%  Similarity=0.100  Sum_probs=57.4

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcccc-ccCCCCcceeeeeee-----EEeeCCcEE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKA-SADSSGVTKTCEMKT-----TVLKDGQVV   75 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~-~~~~~~~t~~~~~~~-----~~~~~~~~~   75 (231)
                      ++.|+++.+|+++++++.+|  .+++|+|+||||||||+++|+|...+.. .+..|.++.......     .........
T Consensus        26 ~~~~~~~~il~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~  103 (267)
T PRK14235         26 SVFYGEKQALFDVDLDIPEK--TVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVG  103 (267)
T ss_pred             EEEECCEEEEEEEEEEEcCC--CEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceE
Confidence            56778888999999999999  9999999999999999999999875310 012333333221110     000123467


Q ss_pred             EEEeCCCCcCC
Q 038053           76 NVIDTPGLFDS   86 (231)
Q Consensus        76 ~l~Dtpg~~~~   86 (231)
                      ++++.|.+++.
T Consensus       104 ~v~q~~~~~~~  114 (267)
T PRK14235        104 MVFQKPNPFPK  114 (267)
T ss_pred             EEecCCCCCCC
Confidence            88888887763

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.14  E-value=2.8e-11  Score=98.80  Aligned_cols=89  Identities=15%  Similarity=0.066  Sum_probs=59.9

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcccc-ccCCCCcceeeeeee-----EEeeCCcEE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKA-SADSSGVTKTCEMKT-----TVLKDGQVV   75 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~-~~~~~~~t~~~~~~~-----~~~~~~~~~   75 (231)
                      ++.|++..+|++++|++.+|  .+++|+|+||||||||+++|+|...+.. .+..|.++.......     .........
T Consensus        11 ~~~~~~~~~l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~   88 (258)
T PRK14241         11 NIYYGSFHAVEDVNLNIEPR--SVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIG   88 (258)
T ss_pred             EEEECCEeeeeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceE
Confidence            56787788999999999999  9999999999999999999999875210 012333332221100     000124467


Q ss_pred             EEEeCCCCcCCCCCchH
Q 038053           76 NVIDTPGLFDSSAGSEF   92 (231)
Q Consensus        76 ~l~Dtpg~~~~~~~~~~   92 (231)
                      ++++.+.+++..+..++
T Consensus        89 ~~~q~~~~~~~~tv~~n  105 (258)
T PRK14241         89 MVFQRPNPFPTMSIRDN  105 (258)
T ss_pred             EEccccccCCCCcHHHH
Confidence            78888887765554443

>cd04110 Rab35 Rab35 subfamily

Probab=99.14  E-value=1e-09  Score=86.17  Aligned_cols=140  Identities=14%  Similarity=0.115  Sum_probs=78.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+++|++|+|||||++.+.+......  ..+....+........ .+  ..+.++||||...           +....
T Consensus         7 ~kivvvG~~~vGKTsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~l~l~D~~G~~~-----------~~~~~   72 (199)
T cd04110           7 FKLLIIGDSGVGKSSLLLRFADNTFSGS--YITTIGVDFKIRTVEI-NGERVKLQIWDTAGQER-----------FRTIT   72 (199)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCC--cCccccceeEEEEEEE-CCEEEEEEEEeCCCchh-----------HHHHH
Confidence            7899999999999999999988753111  1111111111112222 22  3567899999532           11112


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH--------hcCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------ANGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKEYS  163 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~~~  163 (231)
                      ...+..++++++|+|+++.-+..+..        .....|++ .+.++.|..         ...+....+ +++.+|+.+
T Consensus        73 ~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~pii-vVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~  151 (199)
T cd04110          73 STYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKV-LVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKE  151 (199)
T ss_pred             HHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEE-EEEECcccccccccCHHHHHHHHHHcCCEEEEEECCC
Confidence            23346689999999998543322211        11122222 222332210         011222222 577889999


Q ss_pred             HhhHHHHHHHHHHHH
Q 038053          164 KQEISKLMGQMQESY  178 (231)
Q Consensus       164 ~~~i~~l~~~i~~~~  178 (231)
                      |.|+.+++..+...+
T Consensus       152 ~~gi~~lf~~l~~~~  166 (199)
T cd04110         152 NINVEEMFNCITELV  166 (199)
T ss_pred             CcCHHHHHHHHHHHH
Confidence            999999999887754

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>PTZ00369 Ras-like protein; Provisional

Probab=99.14  E-value=1.4e-09  Score=84.61  Aligned_cols=138  Identities=19%  Similarity=0.182  Sum_probs=77.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeee-eeEEee-CCcEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEM-KTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+++|.+|||||||++.+++.....    ....|..... ...... ....+.++||||.....        .+.   
T Consensus         6 ~Ki~iiG~~~~GKTsLi~~~~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~l~---   70 (189)
T PTZ00369          6 YKLVVVGGGGVGKSALTIQFIQNHFID----EYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYS--------AMR---   70 (189)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCc----CcCCchhhEEEEEEEECCEEEEEEEEeCCCCccch--------hhH---
Confidence            789999999999999999999765311    1111111111 111120 12346689999975421        111   


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH--------h--cCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------A--NGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKE  161 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~--~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~  161 (231)
                      ...+..+|++++|+|.++.-+.....        .  ....|++ .+.++.+..         ...+....+ +++.+||
T Consensus        71 ~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~pii-iv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sa  149 (189)
T PTZ00369         71 DQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMI-LVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSA  149 (189)
T ss_pred             HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECcccccccccCHHHHHHHHHHhCCEEEEeeC
Confidence            12345789999999998543322211        1  1122332 222332210         012222222 6788999


Q ss_pred             hhHhhHHHHHHHHHHH
Q 038053          162 YSKQEISKLMGQMQES  177 (231)
Q Consensus       162 ~~~~~i~~l~~~i~~~  177 (231)
                      ++|.|+.+++..+.+.
T Consensus       150 k~~~gi~~~~~~l~~~  165 (189)
T PTZ00369        150 KQRVNVDEAFYELVRE  165 (189)
T ss_pred             CCCCCHHHHHHHHHHH
Confidence            9999999988777653

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.14  E-value=3.6e-11  Score=96.18  Aligned_cols=45  Identities=24%  Similarity=0.237  Sum_probs=42.6

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      +++|++.+++++++|++++|  .+++|+|+||||||||+++|+|...
T Consensus        29 ~~~~~~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~   73 (224)
T cd03220          29 KGEVGEFWALKDVSFEVPRG--ERIGLIGRNGAGKSTLLRLLAGIYP   73 (224)
T ss_pred             hhhcCCeEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            56788999999999999999  9999999999999999999999876

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.14  E-value=2.4e-11  Score=100.04  Aligned_cols=46  Identities=20%  Similarity=0.190  Sum_probs=41.6

Q ss_pred             CCCCC-CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053            2 SSGMG-ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF   49 (231)
Q Consensus         2 ~~~~~-~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~   49 (231)
                      ++.|+ ++.++++++|++.+|  .+++|+|+||||||||+++|+|...+
T Consensus        13 ~~~~~~~~~il~~vsl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p   59 (272)
T PRK15056         13 TVTWRNGHTALRDASFTVPGG--SIAALVGVNGSGKSTLFKALMGFVRL   59 (272)
T ss_pred             EEEecCCcEEEEeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            45674 578999999999999  99999999999999999999999873

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.14  E-value=3.3e-11  Score=107.42  Aligned_cols=84  Identities=13%  Similarity=0.082  Sum_probs=59.2

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE----EeeCCcEEE
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT----VLKDGQVVN   76 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~   76 (231)
                      +++.|++..++++++|++.+|  .+++|+|+||||||||+++|+|...+    ..|.+.........    ........+
T Consensus        10 l~~~~~~~~~l~~is~~i~~G--e~~~l~G~NGsGKSTLl~~l~G~~~p----~~G~i~~~g~~~~~~~~~~~~~~~i~~   83 (501)
T PRK10762         10 IDKAFPGVKALSGAALNVYPG--RVMALVGENGAGKSTMMKVLTGIYTR----DAGSILYLGKEVTFNGPKSSQEAGIGI   83 (501)
T ss_pred             eEEEeCCeEEeeeeeEEEcCC--eEEEEECCCCCCHHHHHHHHhCCCCC----CCcEEEECCEECCCCCHHHHHhCCEEE
Confidence            356788888999999999999  99999999999999999999999873    34433332211000    000234677


Q ss_pred             EEeCCCCcCCCCCc
Q 038053           77 VIDTPGLFDSSAGS   90 (231)
Q Consensus        77 l~Dtpg~~~~~~~~   90 (231)
                      +++.|.+++..++.
T Consensus        84 v~q~~~~~~~~tv~   97 (501)
T PRK10762         84 IHQELNLIPQLTIA   97 (501)
T ss_pred             EEcchhccCCCcHH
Confidence            88887776654443

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.14  E-value=6.8e-11  Score=91.23  Aligned_cols=78  Identities=21%  Similarity=0.198  Sum_probs=53.6

Q ss_pred             CCCCCCc--ccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-E-EeeCCcEEEE
Q 038053            2 SSGMGER--VIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-T-VLKDGQVVNV   77 (231)
Q Consensus         2 ~~~~~~~--~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-~-~~~~~~~~~l   77 (231)
                      ++.|++.  +++++++|++++|  .+++|+|+||+|||||+++|+|...+    ..|.+........ . ........++
T Consensus         7 ~~~~~~~~~~~l~~i~~~i~~G--e~~~i~G~nGsGKStLl~~l~G~~~~----~~G~i~~~g~~~~~~~~~~~~~i~~~   80 (178)
T cd03247           7 SFSYPEQEQQVLKNLSLELKQG--EKIALLGRSGSGKSTLLQLLTGDLKP----QQGEITLDGVPVSDLEKALSSLISVL   80 (178)
T ss_pred             EEEeCCCCccceEEEEEEEcCC--CEEEEECCCCCCHHHHHHHHhccCCC----CCCEEEECCEEHHHHHHHHHhhEEEE
Confidence            4556554  7999999999999  99999999999999999999999873    3333332211000 0 0012345667


Q ss_pred             EeCCCCcC
Q 038053           78 IDTPGLFD   85 (231)
Q Consensus        78 ~Dtpg~~~   85 (231)
                      .+.|.+++
T Consensus        81 ~q~~~~~~   88 (178)
T cd03247          81 NQRPYLFD   88 (178)
T ss_pred             ccCCeeec
Confidence            77776654

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.13  E-value=6.7e-11  Score=95.38  Aligned_cols=45  Identities=20%  Similarity=0.095  Sum_probs=41.8

Q ss_pred             CCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053            3 SGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF   49 (231)
Q Consensus         3 ~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~   49 (231)
                      +.|+.+++|++++|++++|  .+++|+|+||||||||+++|+|...+
T Consensus        29 ~~~~~~~il~~vs~~i~~G--e~~~i~G~NGsGKSTLl~~i~Gl~~p   73 (236)
T cd03267          29 RKYREVEALKGISFTIEKG--EIVGFIGPNGAGKTTTLKILSGLLQP   73 (236)
T ss_pred             cccCCeeeeeceeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCcCC
Confidence            4678889999999999999  99999999999999999999999773

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.13  E-value=2.3e-10  Score=87.07  Aligned_cols=80  Identities=15%  Similarity=0.199  Sum_probs=51.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhhc
Q 038053           26 VVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAK  105 (231)
Q Consensus        26 i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~  105 (231)
                      |+++|.+|||||||++.+++.....    ....|.......... .+..+.+.||||.....           ......+
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~----~~~pt~g~~~~~i~~-~~~~l~i~Dt~G~~~~~-----------~~~~~~~   65 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLE----SVVPTTGFNSVAIPT-QDAIMELLEIGGSQNLR-----------KYWKRYL   65 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcc----cccccCCcceEEEee-CCeEEEEEECCCCcchh-----------HHHHHHH
Confidence            7899999999999999999874311    111111111122222 56678899999965311           1112334


Q ss_pred             CCccEEEEEEECCCCC
Q 038053          106 GGIHAVLVVFSVRSRF  121 (231)
Q Consensus       106 ~~~~~il~vvd~~~~~  121 (231)
                      ..+|++++|+|.++..
T Consensus        66 ~~ad~ii~V~D~t~~~   81 (164)
T cd04162          66 SGSQGLIFVVDSADSE   81 (164)
T ss_pred             hhCCEEEEEEECCCHH
Confidence            6789999999998543

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>PLN03118 Rab family protein; Provisional

Probab=99.13  E-value=9.3e-10  Score=87.15  Aligned_cols=141  Identities=12%  Similarity=0.129  Sum_probs=79.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEee-CCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      .+|+++|++|+|||||++.+++......   .+.............. ....+.++||||.....        .+   ..
T Consensus        15 ~kv~ivG~~~vGKTsli~~l~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~--------~~---~~   80 (211)
T PLN03118         15 FKILLIGDSGVGKSSLLVSFISSSVEDL---APTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFR--------TL---TS   80 (211)
T ss_pred             eEEEEECcCCCCHHHHHHHHHhCCCCCc---CCCceeEEEEEEEEECCEEEEEEEEECCCchhhH--------HH---HH
Confidence            7999999999999999999998754211   1111122222222221 12467899999965411        11   12


Q ss_pred             hhcCCccEEEEEEECCCCCCHHHHH---------h--cCCCCcHHHHHHHHHhh------H---HHHHhhcc-chhhhhh
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEEEA---------A--NGGQPYTDEFLAELKRG------A---TELRDQQA-EVDSLKE  161 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~~~---------~--~~~~~~~~~~~~~~~~~------~---~~l~~~~~-~i~~is~  161 (231)
                      ..+..+|++++|+|+++.-+..+..         .  ....+.+ .+.++.|..      .   ..+....+ +++.+|+
T Consensus        81 ~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~i-lv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SA  159 (211)
T PLN03118         81 SYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKM-LVGNKVDRESERDVSREEGMALAKEHGCLFLECSA  159 (211)
T ss_pred             HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECccccccCccCHHHHHHHHHHcCCEEEEEeC
Confidence            2346779999999998532222211         1  1112222 223333310      0   11111111 5677899


Q ss_pred             hhHhhHHHHHHHHHHHHH
Q 038053          162 YSKQEISKLMGQMQESYE  179 (231)
Q Consensus       162 ~~~~~i~~l~~~i~~~~~  179 (231)
                      +++.|+++++..+...+.
T Consensus       160 k~~~~v~~l~~~l~~~~~  177 (211)
T PLN03118        160 KTRENVEQCFEELALKIM  177 (211)
T ss_pred             CCCCCHHHHHHHHHHHHH
Confidence            999999999988887653

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.13  E-value=8.7e-10  Score=86.63  Aligned_cols=138  Identities=12%  Similarity=0.064  Sum_probs=79.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcce--eeeeeeEEee--CCcEEEEEeCCCCcCCCCCchHHHHHHHHH
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTK--TCEMKTTVLK--DGQVVNVIDTPGLFDSSAGSEFVGKEIVKR  100 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~--~~~~~~~~~~--~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~  100 (231)
                      +|+++|.+|||||||++.+++....    .....|.  +.........  ....+.+.||||...           +...
T Consensus         2 KivivG~~~vGKTsli~~l~~~~~~----~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~-----------~~~~   66 (201)
T cd04107           2 KVLVIGDLGVGKTSIIKRYVHGIFS----QHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQER-----------FGGM   66 (201)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCC----CCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchh-----------hhhh
Confidence            6999999999999999999886531    1112222  2112222221  234577899999642           1111


Q ss_pred             HhhhcCCccEEEEEEECCCCCCHHHHH---------h----cCCCCcHHHHHHHHHhh---------HHHHHhhcc--ch
Q 038053          101 IGLAKGGIHAVLVVFSVRSRFSQEEEA---------A----NGGQPYTDEFLAELKRG---------ATELRDQQA--EV  156 (231)
Q Consensus       101 ~~~~~~~~~~il~vvd~~~~~~~~~~~---------~----~~~~~~~~~~~~~~~~~---------~~~l~~~~~--~i  156 (231)
                      ....+..+|++++|+|+++.-+-....         .    ....|++ .+.++.|..         ...+....+  ++
T Consensus        67 ~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~pii-lv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~  145 (201)
T cd04107          67 TRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCL-LLANKCDLKKRLAKDGEQMDQFCKENGFIGW  145 (201)
T ss_pred             HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEE-EEEECCCcccccccCHHHHHHHHHHcCCceE
Confidence            223447889999999998543222111         0    1222333 333443321         012222222  56


Q ss_pred             hhhhhhhHhhHHHHHHHHHHHH
Q 038053          157 DSLKEYSKQEISKLMGQMQESY  178 (231)
Q Consensus       157 ~~is~~~~~~i~~l~~~i~~~~  178 (231)
                      +.+|++++.|+++++..+....
T Consensus       146 ~e~Sak~~~~v~e~f~~l~~~l  167 (201)
T cd04107         146 FETSAKEGINIEEAMRFLVKNI  167 (201)
T ss_pred             EEEeCCCCCCHHHHHHHHHHHH
Confidence            7789999999999888877654

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04140 ARHI_like ARHI subfamily

Probab=99.13  E-value=9.3e-10  Score=83.57  Aligned_cols=139  Identities=17%  Similarity=0.138  Sum_probs=77.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+++|.+|+|||||+|.+++...........+.+. ........ ....+.++||||.....        .+.   ..
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~-~~~~l~i~Dt~G~~~~~--------~~~---~~   68 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSK-NICTLQITDTTGSHQFP--------AMQ---RL   68 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECC-EEEEEEEEECCCCCcch--------HHH---HH
Confidence            5899999999999999999998653111011111111 11111111 23456799999976421        111   12


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH--------hc----CCCCcHHHHHHHHHhhH---------HHHHhhcc-chhhhhh
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA--------AN----GGQPYTDEFLAELKRGA---------TELRDQQA-EVDSLKE  161 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~--------~~----~~~~~~~~~~~~~~~~~---------~~l~~~~~-~i~~is~  161 (231)
                      .+..+|++++|+|+++.-+.....        ..    ...|++ .+.++.|...         ..+....+ +++.+||
T Consensus        69 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~pii-lv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA  147 (165)
T cd04140          69 SISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIM-LVGNKCDESHKREVSSNEGAACATEWNCAFMETSA  147 (165)
T ss_pred             HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEE-EEEECccccccCeecHHHHHHHHHHhCCcEEEeec
Confidence            335779999999998544332211        11    223433 3344433110         01111111 5677899


Q ss_pred             hhHhhHHHHHHHHHH
Q 038053          162 YSKQEISKLMGQMQE  176 (231)
Q Consensus       162 ~~~~~i~~l~~~i~~  176 (231)
                      ++|.|+.+++..+..
T Consensus       148 ~~g~~v~~~f~~l~~  162 (165)
T cd04140         148 KTNHNVQELFQELLN  162 (165)
T ss_pred             CCCCCHHHHHHHHHh
Confidence            999999999887754

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.13  E-value=4.5e-11  Score=102.33  Aligned_cols=86  Identities=20%  Similarity=0.139  Sum_probs=65.0

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeee-----eeeE------Eee
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCE-----MKTT------VLK   70 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~-----~~~~------~~~   70 (231)
                      .+.||...++++++|++++|  .+++|+|+||||||||+++|+|...    +..|.+..+..     ....      ...
T Consensus        31 ~~~~g~~~~l~~vsf~i~~G--ei~~I~G~nGsGKSTLlr~L~Gl~~----p~~G~I~idG~~~~~~i~~~~~~~l~~~r  104 (382)
T TIGR03415        31 LDETGLVVGVANASLDIEEG--EICVLMGLSGSGKSSLLRAVNGLNP----VSRGSVLVKDGDGSIDVANCDAATLRRLR  104 (382)
T ss_pred             HHhhCCEEEEEeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCC----CCCcEEEECCEecccccccCCHHHHHHHh
Confidence            46789999999999999999  9999999999999999999999987    34444443321     0000      000


Q ss_pred             CCcEEEEEeCCCCcCCCCCchHH
Q 038053           71 DGQVVNVIDTPGLFDSSAGSEFV   93 (231)
Q Consensus        71 ~~~~~~l~Dtpg~~~~~~~~~~~   93 (231)
                      .....++++.+++++..+..+++
T Consensus       105 ~~~i~~vfQ~~~l~p~~Tv~eNi  127 (382)
T TIGR03415       105 THRVSMVFQKFALMPWLTVEENV  127 (382)
T ss_pred             cCCEEEEECCCcCCCCCcHHHHH
Confidence            24578899999999877666554

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.13  E-value=4.4e-11  Score=97.22  Aligned_cols=82  Identities=17%  Similarity=0.081  Sum_probs=56.3

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcccc-ccCCCCcceeeeeeeE-----EeeCCcEE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKA-SADSSGVTKTCEMKTT-----VLKDGQVV   75 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~-~~~~~~~t~~~~~~~~-----~~~~~~~~   75 (231)
                      ++.|++++++++++|++.+|  .+++|+|+||+|||||+++|+|...+.. .+..|.+.........     ........
T Consensus        10 ~~~~~~~~~l~~i~~~i~~G--e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~   87 (250)
T PRK14262         10 SAYYGEKKAVKNVTMKIFKN--QITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVG   87 (250)
T ss_pred             EEEeCCceeEeeeeEeecCC--CEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEE
Confidence            56777788999999999999  9999999999999999999999865210 0122333322211000     00134567


Q ss_pred             EEEeCCCCcC
Q 038053           76 NVIDTPGLFD   85 (231)
Q Consensus        76 ~l~Dtpg~~~   85 (231)
                      ++++.|.+++
T Consensus        88 ~~~q~~~~~~   97 (250)
T PRK14262         88 MVFQKPTPFP   97 (250)
T ss_pred             EEecCCccCc
Confidence            7888888775

>cd04177 RSR1 RSR1 subgroup

Probab=99.13  E-value=3.4e-10  Score=86.22  Aligned_cols=138  Identities=17%  Similarity=0.156  Sum_probs=76.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEee-CCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      .+|+++|.+|||||||++.+++.....   ...+++........... ....+.++||||.....        .+   ..
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--------~~---~~   67 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFIE---SYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFT--------AM---RE   67 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCc---ccCCcchheEEEEEEECCEEEEEEEEeCCCcccch--------hh---hH
Confidence            589999999999999999998765311   11111111111111120 12456789999965421        11   11


Q ss_pred             hhcCCccEEEEEEECCCCCCHHHHH----------hcCCCCcHHHHHHHHHhhH---------HHHHhhcc--chhhhhh
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEEEA----------ANGGQPYTDEFLAELKRGA---------TELRDQQA--EVDSLKE  161 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~---------~~l~~~~~--~i~~is~  161 (231)
                      ..+..++.++++++.++.-+.....          .....|++ .+.++.|...         ..+....+  +++.+||
T Consensus        68 ~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~pii-iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA  146 (168)
T cd04177          68 LYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMV-LVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSA  146 (168)
T ss_pred             HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEE-EEEEChhccccCccCHHHHHHHHHHcCCceEEEeeC
Confidence            2235678999999987432221111          12234443 2334443211         12222222  5778999


Q ss_pred             hhHhhHHHHHHHHHH
Q 038053          162 YSKQEISKLMGQMQE  176 (231)
Q Consensus       162 ~~~~~i~~l~~~i~~  176 (231)
                      +++.|+.+++..+..
T Consensus       147 ~~~~~i~~~f~~i~~  161 (168)
T cd04177         147 RKRTNVDEVFIDLVR  161 (168)
T ss_pred             CCCCCHHHHHHHHHH
Confidence            999999998888765

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd00876 Ras Ras family

Probab=99.13  E-value=2.4e-10  Score=85.79  Aligned_cols=136  Identities=19%  Similarity=0.177  Sum_probs=77.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeC--CcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      +|+++|++|||||||+|.+++... ..  ....++.......... .  ...+.++|+||...           +.....
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~-~~--~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~-----------~~~~~~   65 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTF-VE--EYDPTIEDSYRKTIVV-DGETYTLDILDTAGQEE-----------FSAMRD   65 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCC-Cc--CcCCChhHeEEEEEEE-CCEEEEEEEEECCChHH-----------HHHHHH
Confidence            489999999999999999998763 11  1222222222222222 3  24567899999653           111122


Q ss_pred             hhcCCccEEEEEEECCCCCCHHHHH--------hc--CCCCcHHHHHHHHHhh---------HHHHHhhc-cchhhhhhh
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEEEA--------AN--GGQPYTDEFLAELKRG---------ATELRDQQ-AEVDSLKEY  162 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~~~--------~~--~~~~~~~~~~~~~~~~---------~~~l~~~~-~~i~~is~~  162 (231)
                      ..+..+|++++++|+++..+..+..        ..  ...|++ .+.++.+..         ...+.... .+++.+|+.
T Consensus        66 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~  144 (160)
T cd00876          66 LYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIV-LVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAK  144 (160)
T ss_pred             HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE-EEEECCcccccceecHHHHHHHHHHcCCcEEEeccC
Confidence            2345679999999987432222211        11  133333 233333311         01222222 267889999


Q ss_pred             hHhhHHHHHHHHHH
Q 038053          163 SKQEISKLMGQMQE  176 (231)
Q Consensus       163 ~~~~i~~l~~~i~~  176 (231)
                      ++.|+.+++..+..
T Consensus       145 ~~~~i~~l~~~l~~  158 (160)
T cd00876         145 DNINIDEVFKLLVR  158 (160)
T ss_pred             CCCCHHHHHHHHHh
Confidence            99999998887754

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.12  E-value=4.8e-11  Score=97.08  Aligned_cols=83  Identities=14%  Similarity=0.073  Sum_probs=57.8

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccc-cCCCCcceeeeeee-----EEeeCCcEE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKAS-ADSSGVTKTCEMKT-----TVLKDGQVV   75 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~-~~~~~~t~~~~~~~-----~~~~~~~~~   75 (231)
                      ++.|+++.++++++|++.+|  .+++|+|+||+|||||+++|+|...+..+ +..|.+........     .........
T Consensus        11 ~~~~~~~~il~~~s~~i~~G--~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~   88 (251)
T PRK14249         11 NFFYHKHQVLKNINMDFPER--QITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVG   88 (251)
T ss_pred             EEEECCeeEecceEEEEcCC--CEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEE
Confidence            45677788999999999999  99999999999999999999999764310 01233332221100     001134578


Q ss_pred             EEEeCCCCcCC
Q 038053           76 NVIDTPGLFDS   86 (231)
Q Consensus        76 ~l~Dtpg~~~~   86 (231)
                      ++++.|.+++.
T Consensus        89 ~v~q~~~~~~~   99 (251)
T PRK14249         89 MVFQQPNPFPK   99 (251)
T ss_pred             EEecCCccCcC
Confidence            88998887763

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.12  E-value=4.7e-11  Score=92.36  Aligned_cols=76  Identities=21%  Similarity=0.227  Sum_probs=56.5

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee------------EEe
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT------------TVL   69 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~------------~~~   69 (231)
                      +..||+..+|+++++.++++  .+.|||||+|||||||+++|........     +......+..            ...
T Consensus        14 ~~yYg~~~aL~~i~l~i~~~--~VTAlIGPSGcGKST~LR~lNRmndl~~-----~~r~~G~v~~~g~ni~~~~~d~~~l   86 (253)
T COG1117          14 NLYYGDKHALKDINLDIPKN--KVTALIGPSGCGKSTLLRCLNRMNDLIP-----GARVEGEVLLDGKNIYDPKVDVVEL   86 (253)
T ss_pred             eEEECchhhhccCceeccCC--ceEEEECCCCcCHHHHHHHHHhhcccCc-----CceEEEEEEECCeeccCCCCCHHHH
Confidence            45689999999999999999  9999999999999999999887765322     2222221110            111


Q ss_pred             eCCcEEEEEeCCCCcC
Q 038053           70 KDGQVVNVIDTPGLFD   85 (231)
Q Consensus        70 ~~~~~~~l~Dtpg~~~   85 (231)
                       +.+.+++++-|..++
T Consensus        87 -Rr~vGMVFQkPnPFp  101 (253)
T COG1117          87 -RRRVGMVFQKPNPFP  101 (253)
T ss_pred             -HHHheeeccCCCCCC
Confidence             356788999999887

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.12  E-value=4e-10  Score=85.84  Aligned_cols=138  Identities=17%  Similarity=0.132  Sum_probs=78.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEE--e-eCCcEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTV--L-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~--~-~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      +|+++|.+|||||||++.++.....    .....|.........  . .....+.+.||||......        +.   
T Consensus         2 ki~vvG~~~vGKTsli~~~~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~~---   66 (166)
T cd00877           2 KLVLVGDGGTGKTTFVKRHLTGEFE----KKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGG--------LR---   66 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCC----CCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhcc--------cc---
Confidence            7999999999999999999854421    111122221221111  1 1235677899999653211        11   


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH--------hcCCCCcHHHHHHHHHhhH-------HHHHhhc-cchhhhhhhhHh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------ANGGQPYTDEFLAELKRGA-------TELRDQQ-AEVDSLKEYSKQ  165 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~-------~~l~~~~-~~i~~is~~~~~  165 (231)
                      ...+..+|++++|+|.++..+.....        .....|++ .+.++.+...       ..+.... .+++.+||++|.
T Consensus        67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~pii-iv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~  145 (166)
T cd00877          67 DGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIV-LCGNKVDIKDRKVKAKQITFHRKKNLQYYEISAKSNY  145 (166)
T ss_pred             HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEE-EEEEchhcccccCCHHHHHHHHHcCCEEEEEeCCCCC
Confidence            12235789999999998543332221        11134443 2333433110       1121111 257789999999


Q ss_pred             hHHHHHHHHHHHH
Q 038053          166 EISKLMGQMQESY  178 (231)
Q Consensus       166 ~i~~l~~~i~~~~  178 (231)
                      |+++++..+....
T Consensus       146 ~v~~~f~~l~~~~  158 (166)
T cd00877         146 NFEKPFLWLARKL  158 (166)
T ss_pred             ChHHHHHHHHHHH
Confidence            9999998887543

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=99.12  E-value=1.4e-10  Score=88.88  Aligned_cols=55  Identities=31%  Similarity=0.410  Sum_probs=43.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGL   83 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~   83 (231)
                      .+++++|.||+|||||+|+|+|.....++ ..+|+|+..+...    .+..+.++||||+
T Consensus       118 ~~~~~vG~pnvGKSslin~l~~~~~~~~~-~~pg~T~~~~~~~----~~~~~~l~DtPGi  172 (172)
T cd04178         118 ITVGVVGFPNVGKSSLINSLKRSRACNVG-ATPGVTKSMQEVH----LDKKVKLLDSPGI  172 (172)
T ss_pred             cEEEEEcCCCCCHHHHHHHHhCcccceec-CCCCeEcceEEEE----eCCCEEEEECcCC
Confidence            68999999999999999999998876554 5677777544332    2345789999995

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd04116 Rab9 Rab9 subfamily

Probab=99.12  E-value=2.2e-10  Score=87.34  Aligned_cols=139  Identities=16%  Similarity=0.070  Sum_probs=76.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEe-eCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      .+|+++|++|+|||||++.+++......  ..+............. .....+.+.||||...           +.....
T Consensus         6 ~ki~vvG~~~~GKTsli~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~-----------~~~~~~   72 (170)
T cd04116           6 LKVILLGDGGVGKSSLMNRYVTNKFDTQ--LFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQER-----------FRSLRT   72 (170)
T ss_pred             EEEEEECCCCCCHHHHHHHHHcCCCCcC--cCCceeeEEEEEEEEECCeEEEEEEEeCCChHH-----------HHHhHH
Confidence            7899999999999999999987653211  1111111111112222 1223456789999432           112222


Q ss_pred             hhcCCccEEEEEEECCCCCCHHHHH---------h----cCCCCcHHHHHHHHHhh--------HHHHHhhcc--chhhh
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEEEA---------A----NGGQPYTDEFLAELKRG--------ATELRDQQA--EVDSL  159 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~~~---------~----~~~~~~~~~~~~~~~~~--------~~~l~~~~~--~i~~i  159 (231)
                      ..+..+|++++++|.++.-+.....         .    ....|++ .+.++.|..        ...+....+  +++.+
T Consensus        73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~  151 (170)
T cd04116          73 PFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFV-VLGNKNDIPERQVSTEEAQAWCRENGDYPYFET  151 (170)
T ss_pred             HHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEE-EEEECccccccccCHHHHHHHHHHCCCCeEEEE
Confidence            3446789999999987432222111         0    1123333 233333310        012222222  56778


Q ss_pred             hhhhHhhHHHHHHHHHH
Q 038053          160 KEYSKQEISKLMGQMQE  176 (231)
Q Consensus       160 s~~~~~~i~~l~~~i~~  176 (231)
                      |+++|.|+.+++..+.+
T Consensus       152 Sa~~~~~v~~~~~~~~~  168 (170)
T cd04116         152 SAKDATNVAAAFEEAVR  168 (170)
T ss_pred             ECCCCCCHHHHHHHHHh
Confidence            99999999998877654

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.12  E-value=4.6e-11  Score=97.56  Aligned_cols=88  Identities=18%  Similarity=0.080  Sum_probs=58.8

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcccc-ccCCCCcceeeeeee-E----EeeCCcEE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKA-SADSSGVTKTCEMKT-T----VLKDGQVV   75 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~-~~~~~~~t~~~~~~~-~----~~~~~~~~   75 (231)
                      +++|+++.+|++++|++++|  .+++|+|+||||||||+++|+|...+.. .+..|.+........ .    ........
T Consensus        19 ~~~~~~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~   96 (258)
T PRK14268         19 NLWYGEKQALKNVSMQIPKN--SVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVG   96 (258)
T ss_pred             EEEeCCeeeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEE
Confidence            56778888999999999999  9999999999999999999999875210 012232222211100 0    00123567


Q ss_pred             EEEeCCCCcCCCCCchH
Q 038053           76 NVIDTPGLFDSSAGSEF   92 (231)
Q Consensus        76 ~l~Dtpg~~~~~~~~~~   92 (231)
                      ++++.|.+++ .+..++
T Consensus        97 ~v~q~~~~~~-~tv~en  112 (258)
T PRK14268         97 MVFQKPNPFP-MSIYDN  112 (258)
T ss_pred             EEecCCccCc-ccHHHH
Confidence            8888888776 444433

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.12  E-value=4.4e-10  Score=86.03  Aligned_cols=139  Identities=16%  Similarity=0.089  Sum_probs=78.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcce--eeeeeeEEe-eCCcEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTK--TCEMKTTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~--~~~~~~~~~-~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      +|++||.+|||||||++.+++..-.    .....|.  ......... .....+.+.||||...           +....
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~----~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~~   66 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFD----KNYKATIGVDFEMERFEILGVPFSLQLWDTAGQER-----------FKCIA   66 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCC----CCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHH-----------HHhhH
Confidence            6899999999999999999987531    1212222  211111222 1134678999999643           11122


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH--------hc-CCCCcHHHHHHHHHhhH-----------HHHHhhcc-chhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------AN-GGQPYTDEFLAELKRGA-----------TELRDQQA-EVDSLK  160 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~~-----------~~l~~~~~-~i~~is  160 (231)
                      ...+..+|++++|+|+++.-+.....        .. ...+.+..+.++.|...           ..+...++ ++..+|
T Consensus        67 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~S  146 (170)
T cd04108          67 STYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVS  146 (170)
T ss_pred             HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEE
Confidence            33457889999999998532221111        11 11122223334433110           11222222 556789


Q ss_pred             hhhHhhHHHHHHHHHHHH
Q 038053          161 EYSKQEISKLMGQMQESY  178 (231)
Q Consensus       161 ~~~~~~i~~l~~~i~~~~  178 (231)
                      +.+|.|+++++..+....
T Consensus       147 a~~g~~v~~lf~~l~~~~  164 (170)
T cd04108         147 ALSGENVREFFFRVAALT  164 (170)
T ss_pred             CCCCCCHHHHHHHHHHHH
Confidence            999999999998887654

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.12  E-value=4.5e-11  Score=97.16  Aligned_cols=82  Identities=16%  Similarity=0.063  Sum_probs=56.0

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccc-cccCCCCcceeeeeeeE-----EeeCCcEE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFK-ASADSSGVTKTCEMKTT-----VLKDGQVV   75 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~-~~~~~~~~t~~~~~~~~-----~~~~~~~~   75 (231)
                      ++.|+++.++++++|++.+|  .+++|+|+||||||||+++|+|...+. ..+..|.++........     ........
T Consensus        10 ~~~~~~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~   87 (250)
T PRK14240         10 DLFYGDFQALKKINLDIEEN--QVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVG   87 (250)
T ss_pred             EEEECCceeeecceEEEcCC--CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEE
Confidence            56777788999999999999  999999999999999999999975421 00122333322211100     00133467


Q ss_pred             EEEeCCCCcC
Q 038053           76 NVIDTPGLFD   85 (231)
Q Consensus        76 ~l~Dtpg~~~   85 (231)
                      ++++.|.+++
T Consensus        88 ~~~q~~~~~~   97 (250)
T PRK14240         88 MVFQQPNPFP   97 (250)
T ss_pred             EEecCCccCc
Confidence            8888888775

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.12  E-value=5e-11  Score=102.71  Aligned_cols=85  Identities=13%  Similarity=0.042  Sum_probs=61.3

Q ss_pred             CCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-EE------eeCCcEE
Q 038053            3 SGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-TV------LKDGQVV   75 (231)
Q Consensus         3 ~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-~~------~~~~~~~   75 (231)
                      +.|+...++++++|++++|  .+++|+|+||||||||+++|+|...+    ..|.+........ ..      .......
T Consensus        36 ~~~~~~~~L~~isl~i~~G--ei~~LvG~NGsGKSTLLr~I~Gl~~p----~sG~I~i~G~~i~~~~~~~l~~~~~~~ig  109 (400)
T PRK10070         36 EKTGLSLGVKDASLAIEEG--EIFVIMGLSGSGKSTMVRLLNRLIEP----TRGQVLIDGVDIAKISDAELREVRRKKIA  109 (400)
T ss_pred             hhcCCeEEEEeEEEEEcCC--CEEEEECCCCchHHHHHHHHHcCCCC----CCCEEEECCEECCcCCHHHHHHHHhCCEE
Confidence            4566666899999999999  99999999999999999999999873    4443333221100 00      0023578


Q ss_pred             EEEeCCCCcCCCCCchHH
Q 038053           76 NVIDTPGLFDSSAGSEFV   93 (231)
Q Consensus        76 ~l~Dtpg~~~~~~~~~~~   93 (231)
                      ++++.+++++..+..+++
T Consensus       110 yv~Q~~~l~~~~Tv~enl  127 (400)
T PRK10070        110 MVFQSFALMPHMTVLDNT  127 (400)
T ss_pred             EEECCCcCCCCCCHHHHH
Confidence            899999998876665544

>PRK12736 elongation factor Tu; Reviewed

Probab=99.12  E-value=3.3e-10  Score=97.95  Aligned_cols=93  Identities=14%  Similarity=0.173  Sum_probs=61.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCccccc--------------cCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCC
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKAFKAS--------------ADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSA   88 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~--------------~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~   88 (231)
                      ..+|+++|+.++|||||++.|++.......              ....+.|.+........ .+..+.++||||..    
T Consensus        12 ~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~-~~~~i~~iDtPGh~----   86 (394)
T PRK12736         12 HVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYET-EKRHYAHVDCPGHA----   86 (394)
T ss_pred             eeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecC-CCcEEEEEECCCHH----
Confidence            378999999999999999999974211000              11345665554333333 56678899999943    


Q ss_pred             CchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH
Q 038053           89 GSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA  127 (231)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~  127 (231)
                             ++...+......+|++++|+|+..++...+..
T Consensus        87 -------~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~  118 (394)
T PRK12736         87 -------DYVKNMITGAAQMDGAILVVAATDGPMPQTRE  118 (394)
T ss_pred             -------HHHHHHHHHHhhCCEEEEEEECCCCCchhHHH
Confidence                   22233333446789999999998776665544

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.12  E-value=4.8e-11  Score=97.25  Aligned_cols=87  Identities=14%  Similarity=0.024  Sum_probs=58.5

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccc-cCCCCcceeeeeee-----EEeeCCcEE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKAS-ADSSGVTKTCEMKT-----TVLKDGQVV   75 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~-~~~~~~t~~~~~~~-----~~~~~~~~~   75 (231)
                      ++.|++..++++++|++.+|  .+++|+|+||||||||+++|+|...+..+ +..|.+........     .........
T Consensus        14 ~~~~~~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~   91 (254)
T PRK14273         14 NLFYTDFKALNNINIKILKN--SITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIG   91 (254)
T ss_pred             EEEeCCceeecceeeEEcCC--CEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceE
Confidence            56778788999999999999  99999999999999999999999763210 01232222221100     001134567


Q ss_pred             EEEeCCCCcCCCCCch
Q 038053           76 NVIDTPGLFDSSAGSE   91 (231)
Q Consensus        76 ~l~Dtpg~~~~~~~~~   91 (231)
                      ++++.|.++. .+..+
T Consensus        92 ~v~q~~~~~~-~tv~e  106 (254)
T PRK14273         92 MVFQTPNPFL-MSIYD  106 (254)
T ss_pred             EEeecccccc-CcHHH
Confidence            8888887764 34333

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.12  E-value=4.6e-10  Score=85.73  Aligned_cols=140  Identities=13%  Similarity=0.142  Sum_probs=76.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEee-CCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      .+|+++|++|+|||||++.+++......  ..+....+......... ....+.+.||||....       ...+   ..
T Consensus         3 ~ki~vvG~~~vGKTsli~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~---~~   70 (170)
T cd04115           3 FKIIVIGDSNVGKTCLTYRFCAGRFPER--TEATIGVDFRERTVEIDGERIKVQLWDTAGQERF-------RKSM---VQ   70 (170)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCc--cccceeEEEEEEEEEECCeEEEEEEEeCCChHHH-------HHhh---HH
Confidence            5899999999999999999987653211  11111111111222221 1246778999995421       1111   22


Q ss_pred             hhcCCccEEEEEEECCCCCCHHHHH----------hcCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhhh
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEEEA----------ANGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKEY  162 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~~  162 (231)
                      ..+..+|++++|+|+++.-+.....          .....|++ .+.++.|..         ...+..... +++.+|++
T Consensus        71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-iv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~  149 (170)
T cd04115          71 HYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRI-LVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAK  149 (170)
T ss_pred             HhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEE-EEEECccchhhcCCCHHHHHHHHHHcCCcEEEEecc
Confidence            3346889999999998543332222          11223333 223333311         012222222 56668998


Q ss_pred             h---HhhHHHHHHHHHH
Q 038053          163 S---KQEISKLMGQMQE  176 (231)
Q Consensus       163 ~---~~~i~~l~~~i~~  176 (231)
                      +   +.++++++..+..
T Consensus       150 ~~~~~~~i~~~f~~l~~  166 (170)
T cd04115         150 DPSENDHVEAIFMTLAH  166 (170)
T ss_pred             CCcCCCCHHHHHHHHHH
Confidence            8   7788887766654

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.11  E-value=4.5e-11  Score=96.95  Aligned_cols=81  Identities=20%  Similarity=0.091  Sum_probs=57.0

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE---EeeCCcEEEEE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT---VLKDGQVVNVI   78 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~l~   78 (231)
                      ++.|+++.++++++|++.+|  .+++|+|+||+|||||+++|+|...+.. +..|.++........   ........+++
T Consensus         9 ~~~~~~~~~l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~-~~~G~i~~~g~~i~~~~~~~~~~~i~~~~   85 (246)
T PRK14269          9 NLFYGKKQALFDINMQIEQN--KITALIGASGCGKSTFLRCFNRMNDKIA-KIDGLVEIEGKDVKNQDVVALRKNVGMVF   85 (246)
T ss_pred             EEEECCEeeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcccCCCC-CCceEEEECCEecccCCHHHHhhhEEEEe
Confidence            56788888999999999999  9999999999999999999999864110 233433332211100   01123567888


Q ss_pred             eCCCCcC
Q 038053           79 DTPGLFD   85 (231)
Q Consensus        79 Dtpg~~~   85 (231)
                      +.|.+++
T Consensus        86 q~~~l~~   92 (246)
T PRK14269         86 QQPNVFV   92 (246)
T ss_pred             cCCcccc
Confidence            8888775

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.11  E-value=8.5e-11  Score=92.69  Aligned_cols=56  Identities=18%  Similarity=0.208  Sum_probs=47.7

Q ss_pred             CCCCCCCcc----cCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceee
Q 038053            1 MSSGMGERV----IDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTC   62 (231)
Q Consensus         1 ~~~~~~~~~----~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~   62 (231)
                      +++.|+...    ++++++|++.+|  .++||+|++|||||||.++|+|...    +..|.++.+.
T Consensus         9 l~~~y~~~~~~~~~l~~VS~~i~~G--e~lgivGeSGsGKSTL~r~l~Gl~~----p~~G~I~~~G   68 (252)
T COG1124           9 LSIVYGGGKFAFHALNNVSLEIERG--ETLGIVGESGSGKSTLARLLAGLEK----PSSGSILLDG   68 (252)
T ss_pred             eEEEecCCcchhhhhcceeEEecCC--CEEEEEcCCCCCHHHHHHHHhcccC----CCCceEEECC
Confidence            356777777    999999999999  9999999999999999999999998    4555555444

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.11  E-value=7.6e-10  Score=84.62  Aligned_cols=135  Identities=17%  Similarity=0.122  Sum_probs=76.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           26 VVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        26 i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      |+++|.+|+|||||++.+++..-..    ....|...... .... .+  ..+.+.||||......        +   ..
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~--------~---~~   64 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPE----DYVPTVFENYSADVEV-DGKPVELGLWDTAGQEDYDR--------L---RP   64 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCC----CCCCcEEeeeeEEEEE-CCEEEEEEEEECCCCcccch--------h---ch
Confidence            5899999999999999999875421    11112211111 1222 23  2477899999653211        1   11


Q ss_pred             hhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhhH---------------------HHHHhh
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRGA---------------------TELRDQ  152 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~---------------------~~l~~~  152 (231)
                      ..+..+|++++++|+++.-+-....         .....|++ .+.++.|...                     ..+...
T Consensus        65 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  143 (174)
T smart00174       65 LSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPII-LVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKR  143 (174)
T ss_pred             hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEE-EEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHH
Confidence            2346789999999998542222211         12233443 3334433110                     112222


Q ss_pred             cc--chhhhhhhhHhhHHHHHHHHHHH
Q 038053          153 QA--EVDSLKEYSKQEISKLMGQMQES  177 (231)
Q Consensus       153 ~~--~i~~is~~~~~~i~~l~~~i~~~  177 (231)
                      .+  +.+.+|+++|.|+++++..+...
T Consensus       144 ~~~~~~~e~Sa~~~~~v~~lf~~l~~~  170 (174)
T smart00174      144 IGAVKYLECSALTQEGVREVFEEAIRA  170 (174)
T ss_pred             cCCcEEEEecCCCCCCHHHHHHHHHHH
Confidence            22  45678999999999998887653

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04176 Rap2 Rap2 subgroup

Probab=99.11  E-value=3.4e-10  Score=85.62  Aligned_cols=137  Identities=18%  Similarity=0.198  Sum_probs=76.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+++|.+|+|||||++.+++.....   ...++........... .+  ..+.+.||||......        +..  
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~---~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~--------~~~--   67 (163)
T cd04176           2 YKVVVLGSGGVGKSALTVQFVSGTFIE---KYDPTIEDFYRKEIEV-DSSPSVLEILDTAGTEQFAS--------MRD--   67 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCC---CCCCchhheEEEEEEE-CCEEEEEEEEECCCcccccc--------hHH--
Confidence            589999999999999998888764321   1111111111122222 22  3466899999643211        111  


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH--------h--cCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------A--NGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKE  161 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~--~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~  161 (231)
                       ..+..+|++++|+|+++.-+-.+..        .  ....|++ .+.++.|..         ...+..... +++.+|+
T Consensus        68 -~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piv-iv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  145 (163)
T cd04176          68 -LYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPII-LVGNKVDLESEREVSSAEGRALAEEWGCPFMETSA  145 (163)
T ss_pred             -HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECccchhcCccCHHHHHHHHHHhCCEEEEecC
Confidence             1235679999999998543322221        1  1234443 233333310         012222222 5677899


Q ss_pred             hhHhhHHHHHHHHHH
Q 038053          162 YSKQEISKLMGQMQE  176 (231)
Q Consensus       162 ~~~~~i~~l~~~i~~  176 (231)
                      ++|.|+.+++..+..
T Consensus       146 ~~~~~v~~l~~~l~~  160 (163)
T cd04176         146 KSKTMVNELFAEIVR  160 (163)
T ss_pred             CCCCCHHHHHHHHHH
Confidence            999999998877654

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.11  E-value=5.6e-11  Score=94.17  Aligned_cols=80  Identities=21%  Similarity=0.205  Sum_probs=55.1

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEEeeCCcEEEEEeC
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTVLKDGQVVNVIDT   80 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~Dt   80 (231)
                      +++|++...  +++|++.+|  .+++|+|+||||||||+++|+|...+    ..|.++...... ..........++++.
T Consensus         7 ~~~~~~~~~--~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~gl~~~----~~G~i~~~g~~~~~~~~~~~~i~~~~q~   78 (211)
T cd03298           7 RFSYGEQPM--HFDLTFAQG--EITAIVGPSGSGKSTLLNLIAGFETP----QSGRVLINGVDVTAAPPADRPVSMLFQE   78 (211)
T ss_pred             EEEeCCEec--ceEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CCceEEECCEEcCcCCHhHccEEEEecc
Confidence            456765542  999999999  99999999999999999999999873    344333322110 000012346788888


Q ss_pred             CCCcCCCCC
Q 038053           81 PGLFDSSAG   89 (231)
Q Consensus        81 pg~~~~~~~   89 (231)
                      |.+++..+.
T Consensus        79 ~~~~~~~tv   87 (211)
T cd03298          79 NNLFAHLTV   87 (211)
T ss_pred             cccCCCCcH
Confidence            888765443

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.11  E-value=5.4e-11  Score=90.99  Aligned_cols=55  Identities=22%  Similarity=0.251  Sum_probs=48.2

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCccee
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKT   61 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~   61 (231)
                      ++|.|+.+.+++++++.+++|  ...+||||||||||||+.+++....    .+.|.++.+
T Consensus         7 v~K~y~~~~vl~~isl~i~~g--~iTs~IGPNGAGKSTLLS~~sRL~~----~d~G~i~i~   61 (252)
T COG4604           7 VSKSYGTKVVLDDVSLDIPKG--GITSIIGPNGAGKSTLLSMMSRLLK----KDSGEITID   61 (252)
T ss_pred             hhHhhCCEEeeccceeeecCC--ceeEEECCCCccHHHHHHHHHHhcc----ccCceEEEe
Confidence            478999999999999999999  9999999999999999999998887    345555543

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.11  E-value=4.8e-11  Score=106.59  Aligned_cols=82  Identities=15%  Similarity=0.074  Sum_probs=57.7

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE-E---eeCCcEEE
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT-V---LKDGQVVN   76 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~-~---~~~~~~~~   76 (231)
                      +++.|+++.++++++|++.+|  .+++|+|+||||||||+++|+|...+    ..|.+......... .   .......+
T Consensus        11 l~~~~~~~~il~~vs~~i~~G--e~~~liG~nGsGKSTLl~~i~Gl~~p----~~G~i~~~g~~i~~~~~~~~~~~~i~~   84 (510)
T PRK09700         11 IGKSFGPVHALKSVNLTVYPG--EIHALLGENGAGKSTLMKVLSGIHEP----TKGTITINNINYNKLDHKLAAQLGIGI   84 (510)
T ss_pred             eEEEcCCeEEeeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHcCCcCC----CccEEEECCEECCCCCHHHHHHCCeEE
Confidence            367788888999999999999  99999999999999999999999873    33333322111000 0   00134667


Q ss_pred             EEeCCCCcCCCC
Q 038053           77 VIDTPGLFDSSA   88 (231)
Q Consensus        77 l~Dtpg~~~~~~   88 (231)
                      +++.+.+++..+
T Consensus        85 v~q~~~~~~~~t   96 (510)
T PRK09700         85 IYQELSVIDELT   96 (510)
T ss_pred             EeecccccCCCc
Confidence            788777665443

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.11  E-value=5.6e-11  Score=96.68  Aligned_cols=87  Identities=18%  Similarity=0.106  Sum_probs=58.5

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcccc-ccCCCCcceeeeeee-E----EeeCCcEE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKA-SADSSGVTKTCEMKT-T----VLKDGQVV   75 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~-~~~~~~~t~~~~~~~-~----~~~~~~~~   75 (231)
                      +++|+++.+++++++++.+|  .+++|+|+||+|||||+++|+|...+.. .+..|.+..+..... .    ........
T Consensus        11 ~~~~~~~~~l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~   88 (251)
T PRK14270         11 NLWYGEKQALNDINLPIYEN--KITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVG   88 (251)
T ss_pred             EEEECCeeeeeceeEEEcCC--CEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheE
Confidence            56787788999999999999  9999999999999999999999865210 012233332221100 0    00134567


Q ss_pred             EEEeCCCCcCCCCCch
Q 038053           76 NVIDTPGLFDSSAGSE   91 (231)
Q Consensus        76 ~l~Dtpg~~~~~~~~~   91 (231)
                      ++++.|.+++ .+..+
T Consensus        89 ~~~q~~~~~~-~tv~e  103 (251)
T PRK14270         89 MVFQKPNPFP-MSIYD  103 (251)
T ss_pred             EEecCCCcCC-CcHHH
Confidence            8888888776 44333

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.11  E-value=3.8e-11  Score=98.75  Aligned_cols=46  Identities=28%  Similarity=0.310  Sum_probs=42.6

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF   49 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~   49 (231)
                      ++.|+++.+|++++|++.+|  .+++|+|+||||||||+++|+|...+
T Consensus         8 ~~~~~~~~il~~vsl~i~~G--e~~~l~G~nGsGKSTLl~~laG~~~p   53 (272)
T PRK13547          8 HVARRHRAILRDLSLRIEPG--RVTALLGRNGAGKSTLLKALAGDLTG   53 (272)
T ss_pred             EEEECCEeEEecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            56788888999999999999  99999999999999999999999763

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.11  E-value=8.7e-11  Score=92.50  Aligned_cols=84  Identities=17%  Similarity=0.143  Sum_probs=56.2

Q ss_pred             CCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eE-EeeCCcEEEEEeCCCC
Q 038053            6 GERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TT-VLKDGQVVNVIDTPGL   83 (231)
Q Consensus         6 ~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~-~~~~~~~~~l~Dtpg~   83 (231)
                      ++..++++++|++++|  .+++|+|+||||||||+++|+|...+.. +..|.++...... .. ........++++.+.+
T Consensus        18 ~~~~il~~~s~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~-~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~   94 (202)
T cd03233          18 SKIPILKDFSGVVKPG--EMVLVLGRPGSGCSTLLKALANRTEGNV-SVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVH   94 (202)
T ss_pred             CCceeeeeEEEEECCC--cEEEEECCCCCCHHHHHHHhcccCCCCC-CcceEEEECCEECccchhhhcceEEEEeccccc
Confidence            3668999999999999  9999999999999999999999976210 1223222221110 00 0113456678888877


Q ss_pred             cCCCCCchH
Q 038053           84 FDSSAGSEF   92 (231)
Q Consensus        84 ~~~~~~~~~   92 (231)
                      ++..+..++
T Consensus        95 ~~~~tv~~~  103 (202)
T cd03233          95 FPTLTVRET  103 (202)
T ss_pred             CCCCcHHHH
Confidence            775554443

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.11  E-value=5e-11  Score=105.97  Aligned_cols=82  Identities=15%  Similarity=0.087  Sum_probs=57.6

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE----EeeCCcEEE
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT----VLKDGQVVN   76 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~   76 (231)
                      +++.|+++.++++++|++++|  .+++|+|+||||||||+++|+|...+    ..|.++........    ........+
T Consensus         4 l~~~~~~~~il~~vs~~i~~G--e~~~liG~nGsGKSTLl~~l~Gl~~p----~~G~i~~~g~~~~~~~~~~~~~~~i~~   77 (491)
T PRK10982          4 ISKSFPGVKALDNVNLKVRPH--SIHALMGENGAGKSTLLKCLFGIYQK----DSGSILFQGKEIDFKSSKEALENGISM   77 (491)
T ss_pred             eEEEeCCEEeeeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHcCCCCC----CceEEEECCEECCCCCHHHHHhCCEEE
Confidence            356788888999999999999  99999999999999999999999873    33433322211000    000234567


Q ss_pred             EEeCCCCcCCCC
Q 038053           77 VIDTPGLFDSSA   88 (231)
Q Consensus        77 l~Dtpg~~~~~~   88 (231)
                      +++.|.+++..+
T Consensus        78 v~q~~~~~~~~t   89 (491)
T PRK10982         78 VHQELNLVLQRS   89 (491)
T ss_pred             EecccccccCCC
Confidence            778776655433

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.11  E-value=4.9e-11  Score=98.11  Aligned_cols=81  Identities=16%  Similarity=0.142  Sum_probs=55.5

Q ss_pred             CCCCC--CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee----EEeeCCcEE
Q 038053            2 SSGMG--ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT----TVLKDGQVV   75 (231)
Q Consensus         2 ~~~~~--~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~   75 (231)
                      ++.|+  ++++++++++++.+|  .+++|+|+||||||||+++|+|...+    ..|.++.......    ... .....
T Consensus        14 ~~~~~~~~~~il~~isl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p----~~G~I~~~g~~i~~~~~~~~-~~~i~   86 (271)
T PRK13632         14 SFSYPNSENNALKNVSFEINEG--EYVAILGHNGSGKSTISKILTGLLKP----QSGEIKIDGITISKENLKEI-RKKIG   86 (271)
T ss_pred             EEEcCCCCccceeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCC----CCceEEECCEecCcCCHHHH-hcceE
Confidence            45674  567999999999999  99999999999999999999999873    3343333221110    011 23466


Q ss_pred             EEEeCCC-CcCCCCC
Q 038053           76 NVIDTPG-LFDSSAG   89 (231)
Q Consensus        76 ~l~Dtpg-~~~~~~~   89 (231)
                      ++++.|. .+...+.
T Consensus        87 ~v~q~~~~~~~~~tv  101 (271)
T PRK13632         87 IIFQNPDNQFIGATV  101 (271)
T ss_pred             EEEeCHHHhcCcccH
Confidence            7888773 3433333

>cd04126 Rab20 Rab20 subfamily

Probab=99.10  E-value=9.5e-10  Score=87.61  Aligned_cols=81  Identities=21%  Similarity=0.189  Sum_probs=52.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhh
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLA  104 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~  104 (231)
                      +|+++|.+|+|||||++.+++.....    . ..|.........+ ....+.++||||.....        .+.   ...
T Consensus         2 KIvivG~~~vGKTSLi~r~~~~~f~~----~-~~Tig~~~~~~~~-~~~~l~iwDt~G~e~~~--------~l~---~~~   64 (220)
T cd04126           2 KVVLLGDMNVGKTSLLHRYMERRFKD----T-VSTVGGAFYLKQW-GPYNISIWDTAGREQFH--------GLG---SMY   64 (220)
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCCCC----C-CCccceEEEEEEe-eEEEEEEEeCCCcccch--------hhH---HHH
Confidence            68999999999999999998876421    1 1122222222222 34567899999965321        111   122


Q ss_pred             cCCccEEEEEEECCCCCC
Q 038053          105 KGGIHAVLVVFSVRSRFS  122 (231)
Q Consensus       105 ~~~~~~il~vvd~~~~~~  122 (231)
                      +..+|++++|+|+++.-+
T Consensus        65 ~~~ad~~IlV~Dvt~~~S   82 (220)
T cd04126          65 CRGAAAVILTYDVSNVQS   82 (220)
T ss_pred             hccCCEEEEEEECCCHHH
Confidence            467899999999986533

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.10  E-value=5.7e-11  Score=106.02  Aligned_cols=85  Identities=13%  Similarity=0.087  Sum_probs=58.0

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-EE---eeCCcEEE
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-TV---LKDGQVVN   76 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-~~---~~~~~~~~   76 (231)
                      +++.|++..++++++|++.+|  .+++|+|+||||||||+++|+|...+.  +..|.+........ ..   .......+
T Consensus        11 l~~~~~~~~il~~isl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~   86 (506)
T PRK13549         11 ITKTFGGVKALDNVSLKVRAG--EIVSLCGENGAGKSTLMKVLSGVYPHG--TYEGEIIFEGEELQASNIRDTERAGIAI   86 (506)
T ss_pred             eEEEeCCeEeecceeEEEeCC--eEEEEECCCCCCHHHHHHHHhCCCCCC--CCCeEEEECCEECCCCCHHHHHHCCeEE
Confidence            356788888999999999999  999999999999999999999987630  02333222111100 00   00234677


Q ss_pred             EEeCCCCcCCCCC
Q 038053           77 VIDTPGLFDSSAG   89 (231)
Q Consensus        77 l~Dtpg~~~~~~~   89 (231)
                      +++.|.+++..++
T Consensus        87 v~q~~~~~~~~tv   99 (506)
T PRK13549         87 IHQELALVKELSV   99 (506)
T ss_pred             EEeccccCCCCcH
Confidence            8888776654443

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.10  E-value=1e-09  Score=84.13  Aligned_cols=136  Identities=16%  Similarity=0.164  Sum_probs=78.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeee-eeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKR  100 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~  100 (231)
                      .+|+++|.+|+|||||++.+.+....    .....|..... ..... .+  ..+.+.||||....           ...
T Consensus         3 ~ki~vvG~~~vGKTsL~~~~~~~~f~----~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~l   66 (172)
T cd04141           3 YKIVMLGAGGVGKSAVTMQFISHSFP----DYHDPTIEDAYKQQARI-DNEPALLDILDTAGQAEF-----------TAM   66 (172)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCC----CCcCCcccceEEEEEEE-CCEEEEEEEEeCCCchhh-----------HHH
Confidence            58999999999999999988876431    11111221111 11222 33  35678999996531           111


Q ss_pred             HhhhcCCccEEEEEEECCCCCCHHHHH----------hcCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhh
Q 038053          101 IGLAKGGIHAVLVVFSVRSRFSQEEEA----------ANGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLK  160 (231)
Q Consensus       101 ~~~~~~~~~~il~vvd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is  160 (231)
                      ....+..+|++++|+|+++.-+-....          .....|++ .+.++.|..         ...+....+ +++.+|
T Consensus        67 ~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~pii-lvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~S  145 (172)
T cd04141          67 RDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLV-LVGNKVDLESQRQVTTEEGRNLAREFNCPFFETS  145 (172)
T ss_pred             hHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEE-EEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEe
Confidence            222345789999999998654433321          11223433 233443311         012222222 677789


Q ss_pred             hhhHhhHHHHHHHHHH
Q 038053          161 EYSKQEISKLMGQMQE  176 (231)
Q Consensus       161 ~~~~~~i~~l~~~i~~  176 (231)
                      |++|.|+++++..+..
T Consensus       146 a~~~~~v~~~f~~l~~  161 (172)
T cd04141         146 AALRHYIDDAFHGLVR  161 (172)
T ss_pred             cCCCCCHHHHHHHHHH
Confidence            9999999998877655

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.10  E-value=6.6e-11  Score=97.51  Aligned_cols=75  Identities=15%  Similarity=0.038  Sum_probs=53.4

Q ss_pred             CCCCC-CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE----EeeCCcEEE
Q 038053            2 SSGMG-ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT----VLKDGQVVN   76 (231)
Q Consensus         2 ~~~~~-~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~   76 (231)
                      ++.|+ +..++++++|++.+|  .+++|+|+||+|||||+++|+|...+    ..|.+.........    ........+
T Consensus         8 ~~~~~~~~~~l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p----~~G~i~~~g~~~~~~~~~~~~~~~i~~   81 (274)
T PRK13644          8 SYSYPDGTPALENINLVIKKG--EYIGIIGKNGSGKSTLALHLNGLLRP----QKGKVLVSGIDTGDFSKLQGIRKLVGI   81 (274)
T ss_pred             EEEcCCCCceeeeeEEEEeCC--CEEEEECCCCCCHHHHHHHHhcCCCC----CCceEEECCEECCccccHHHHHhheEE
Confidence            56774 567999999999999  99999999999999999999999773    34433332211100    000234677


Q ss_pred             EEeCCC
Q 038053           77 VIDTPG   82 (231)
Q Consensus        77 l~Dtpg   82 (231)
                      +++.|.
T Consensus        82 v~q~~~   87 (274)
T PRK13644         82 VFQNPE   87 (274)
T ss_pred             EEEChh
Confidence            888775

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.10  E-value=4.6e-11  Score=98.51  Aligned_cols=83  Identities=14%  Similarity=0.119  Sum_probs=57.6

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccc-cCCCCcceeeeee-eE---EeeCCcEE
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKAS-ADSSGVTKTCEMK-TT---VLKDGQVV   75 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~-~~~~~~t~~~~~~-~~---~~~~~~~~   75 (231)
                      ++++|++++++++++|++++|  .+++|+|+||+|||||+++|+|...+..+ +..|.++...... ..   ........
T Consensus        27 l~~~~~~~~il~~vs~~i~~G--e~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~  104 (276)
T PRK14271         27 LTLGFAGKTVLDQVSMGFPAR--AVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVG  104 (276)
T ss_pred             EEEEECCEEEeeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheE
Confidence            356788889999999999999  99999999999999999999998763111 1233333222110 00   00134567


Q ss_pred             EEEeCCCCcC
Q 038053           76 NVIDTPGLFD   85 (231)
Q Consensus        76 ~l~Dtpg~~~   85 (231)
                      ++++.|.+++
T Consensus       105 ~v~q~~~l~~  114 (276)
T PRK14271        105 MLFQRPNPFP  114 (276)
T ss_pred             EeccCCccCC
Confidence            8888888776

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.10  E-value=8.2e-11  Score=96.47  Aligned_cols=77  Identities=19%  Similarity=0.101  Sum_probs=53.5

Q ss_pred             CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE-E-----eeCCcEEEEEeC
Q 038053            7 ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT-V-----LKDGQVVNVIDT   80 (231)
Q Consensus         7 ~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~-~-----~~~~~~~~l~Dt   80 (231)
                      ++.++++++|++++|  .+++|+|+||||||||+++|+|...+    ..|.++........ .     .......++++.
T Consensus        23 ~~~il~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p----~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~   96 (265)
T TIGR02769        23 RAPVLTNVSLSIEEG--ETVGLLGRSGCGKSTLARLLLGLEKP----AQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQD   96 (265)
T ss_pred             ceEEeeCceeEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CCcEEEECCEEccccCHHHHHHHhhceEEEecC
Confidence            467999999999999  99999999999999999999999873    44444433221100 0     012346778888


Q ss_pred             CC--CcCCCCC
Q 038053           81 PG--LFDSSAG   89 (231)
Q Consensus        81 pg--~~~~~~~   89 (231)
                      |.  +++..+.
T Consensus        97 ~~~~~~~~~tv  107 (265)
T TIGR02769        97 SPSAVNPRMTV  107 (265)
T ss_pred             hhhhcCCCCCH
Confidence            73  4443343

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.09  E-value=3.7e-10  Score=88.58  Aligned_cols=137  Identities=15%  Similarity=0.154  Sum_probs=78.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      +|+++|.+|+|||||++.+++.....   ....++.......... .+  ..+.++||||.....        .+.   .
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~---~~~~t~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~--------~~~---~   65 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEP---KYRRTVEEMHRKEYEV-GGVSLTLDILDTSGSYSFP--------AMR---K   65 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCc---cCCCchhhheeEEEEE-CCEEEEEEEEECCCchhhh--------HHH---H
Confidence            48999999999999999998875421   1111111111122222 33  457789999976421        111   1


Q ss_pred             hhcCCccEEEEEEECCCCCCHHHHH--------h--cCCCCcHHHHHHHHHhhH-------HHHHh----hc-cchhhhh
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEEEA--------A--NGGQPYTDEFLAELKRGA-------TELRD----QQ-AEVDSLK  160 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~~~--------~--~~~~~~~~~~~~~~~~~~-------~~l~~----~~-~~i~~is  160 (231)
                      ..+..+|++++|+|+++.-+..+..        .  ....|++ .+.+++|...       .....    .. .+++.+|
T Consensus        66 ~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~S  144 (198)
T cd04147          66 LSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIV-VVGNKADSLEEERQVPAKDALSTVELDWNCGFVETS  144 (198)
T ss_pred             HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE-EEEEccccccccccccHHHHHHHHHhhcCCcEEEec
Confidence            2346789999999998533322211        1  1233443 3344443200       01111    11 1556799


Q ss_pred             hhhHhhHHHHHHHHHHH
Q 038053          161 EYSKQEISKLMGQMQES  177 (231)
Q Consensus       161 ~~~~~~i~~l~~~i~~~  177 (231)
                      +.+|.|+.+++..+...
T Consensus       145 a~~g~gv~~l~~~l~~~  161 (198)
T cd04147         145 AKDNENVLEVFKELLRQ  161 (198)
T ss_pred             CCCCCCHHHHHHHHHHH
Confidence            99999999999988764

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>PRK00049 elongation factor Tu; Reviewed

Probab=99.09  E-value=4.4e-10  Score=97.19  Aligned_cols=92  Identities=17%  Similarity=0.192  Sum_probs=63.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccc--------------cCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKAS--------------ADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAG   89 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~--------------~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~   89 (231)
                      .+|+++|+.++|||||++.|++......+              ....+.|.+........ .+..+.++||||..     
T Consensus        13 ~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~-----   86 (396)
T PRK00049         13 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYET-EKRHYAHVDCPGHA-----   86 (396)
T ss_pred             EEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcC-CCeEEEEEECCCHH-----
Confidence            78999999999999999999984211000              01345565554333333 56678899999963     


Q ss_pred             chHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH
Q 038053           90 SEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA  127 (231)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~  127 (231)
                            .+..........+|++++|+|+..++...+..
T Consensus        87 ------~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~  118 (396)
T PRK00049         87 ------DYVKNMITGAAQMDGAILVVSAADGPMPQTRE  118 (396)
T ss_pred             ------HHHHHHHhhhccCCEEEEEEECCCCCchHHHH
Confidence                  23334444557899999999998777766543

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.09  E-value=7.2e-11  Score=100.65  Aligned_cols=85  Identities=18%  Similarity=0.188  Sum_probs=59.6

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-------EEeeCCc
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-------TVLKDGQ   73 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-------~~~~~~~   73 (231)
                      +++.|++..+  +++|++.+|  .+++|+|+||||||||+++|+|...+    ..|.+........       .......
T Consensus         5 l~~~~~~~~~--~isl~i~~G--ei~~l~G~nGsGKSTLl~~iaGl~~p----~~G~I~~~g~~i~~~~~~~~~~~~~~~   76 (354)
T TIGR02142         5 FSKRLGDFSL--DADFTLPGQ--GVTAIFGRSGSGKTTLIRLIAGLTRP----DEGEIVLNGRTLFDSRKGIFLPPEKRR   76 (354)
T ss_pred             EEEEECCEEE--EEEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CceEEEECCEECccCccccccchhhCC
Confidence            3567877654  899999999  99999999999999999999999874    3333332221100       0011345


Q ss_pred             EEEEEeCCCCcCCCCCchHH
Q 038053           74 VVNVIDTPGLFDSSAGSEFV   93 (231)
Q Consensus        74 ~~~l~Dtpg~~~~~~~~~~~   93 (231)
                      ..++++.|.+++..+..+++
T Consensus        77 i~~v~q~~~l~~~~tv~enl   96 (354)
T TIGR02142        77 IGYVFQEARLFPHLSVRGNL   96 (354)
T ss_pred             eEEEecCCccCCCCcHHHHH
Confidence            67889999988866655443

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK09866 hypothetical protein; Provisional

Probab=99.09  E-value=4.4e-10  Score=99.99  Aligned_cols=97  Identities=15%  Similarity=0.205  Sum_probs=60.5

Q ss_pred             cEEEEEeCCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH-----hcCC--CCcHHHHHHHHHhh
Q 038053           73 QVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGG--QPYTDEFLAELKRG  145 (231)
Q Consensus        73 ~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~~  145 (231)
                      ..++++||||+.....  ..+.+.+..    .+..+|+|++|+|+...++..+..     ...+  .|++ .++|++|..
T Consensus       230 ~QIIFVDTPGIhk~~~--~~L~k~M~e----qL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVI-LVVNKIDl~  302 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQ--PHLQKMLNQ----QLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLY-VLVNKFDQQ  302 (741)
T ss_pred             CCEEEEECCCCCCccc--hHHHHHHHH----HHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEE-EEEEcccCC
Confidence            4578999999986321  223333333    467889999999998666666654     1112  2443 333444321


Q ss_pred             ------HHHHHh----h-------ccchhhhhhhhHhhHHHHHHHHHH
Q 038053          146 ------ATELRD----Q-------QAEVDSLKEYSKQEISKLMGQMQE  176 (231)
Q Consensus       146 ------~~~l~~----~-------~~~i~~is~~~~~~i~~l~~~i~~  176 (231)
                            .+.+..    .       ...|+++||++|.++..++..+..
T Consensus       303 dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        303 DRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             CcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence                  111111    1       226889999999999999998877

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.09  E-value=1e-10  Score=93.69  Aligned_cols=82  Identities=20%  Similarity=0.131  Sum_probs=55.1

Q ss_pred             cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCC
Q 038053            8 RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSS   87 (231)
Q Consensus         8 ~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~   87 (231)
                      ++++++++|++.+|  .+++|+|+||||||||+++|+|..... .+..|.+.................++++.+.+++..
T Consensus        20 ~~~l~~vsl~i~~G--e~~~l~G~nGsGKSTLlk~l~G~~~~~-~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~   96 (226)
T cd03234          20 ARILNDVSLHVESG--QVMAILGSSGSGKTTLLDAISGRVEGG-GTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGL   96 (226)
T ss_pred             cccccCceEEEcCC--eEEEEECCCCCCHHHHHHHHhCccCCC-CCCceEEEECCEECChHHhcccEEEeCCCCccCcCC
Confidence            68999999999999  999999999999999999999987510 012222222111100001134567788888888755


Q ss_pred             CCchH
Q 038053           88 AGSEF   92 (231)
Q Consensus        88 ~~~~~   92 (231)
                      +..++
T Consensus        97 tv~en  101 (226)
T cd03234          97 TVRET  101 (226)
T ss_pred             cHHHH
Confidence            54443

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.09  E-value=1.3e-10  Score=92.31  Aligned_cols=83  Identities=16%  Similarity=0.143  Sum_probs=57.6

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEEeeCCcEEEEEeC
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTVLKDGQVVNVIDT   80 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~Dt   80 (231)
                      +++|+.  .+.++++++.+|  .+++|+|+||+|||||+++|+|...+    ..|.+....... ..........++++.
T Consensus         7 ~~~~~~--~~~~~s~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~----~~G~i~~~g~~~~~~~~~~~~i~~v~q~   78 (213)
T TIGR01277         7 RYEYEH--LPMEFDLNVADG--EIVAIMGPSGAGKSTLLNLIAGFIEP----ASGSIKVNDQSHTGLAPYQRPVSMLFQE   78 (213)
T ss_pred             eEEeCC--cceeeEEEEeCC--cEEEEECCCCCCHHHHHHHHhcCCCC----CCcEEEECCEEcccCChhccceEEEecc
Confidence            556653  567999999999  99999999999999999999999874    333333222110 000113457788999


Q ss_pred             CCCcCCCCCchH
Q 038053           81 PGLFDSSAGSEF   92 (231)
Q Consensus        81 pg~~~~~~~~~~   92 (231)
                      |.+++..+..++
T Consensus        79 ~~~~~~~t~~en   90 (213)
T TIGR01277        79 NNLFAHLTVRQN   90 (213)
T ss_pred             CccCCCCcHHHH
Confidence            988875554443

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.09  E-value=6.7e-11  Score=96.10  Aligned_cols=82  Identities=17%  Similarity=0.080  Sum_probs=56.6

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccc-cCCCCcceeeeeee----EEeeCCcEEE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKAS-ADSSGVTKTCEMKT----TVLKDGQVVN   76 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~-~~~~~~t~~~~~~~----~~~~~~~~~~   76 (231)
                      ++.|+++.++++++|++.+|  .+++|+|+||+|||||+++|+|...+..+ +..|.+........    .........+
T Consensus        10 ~~~~~~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~   87 (249)
T PRK14253         10 DLFYGENQALKSINLPIPAR--QVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGM   87 (249)
T ss_pred             EEEECCeeeeecceEEecCC--CEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeE
Confidence            56788888999999999999  99999999999999999999998763211 11232222211100    0011234677


Q ss_pred             EEeCCCCcC
Q 038053           77 VIDTPGLFD   85 (231)
Q Consensus        77 l~Dtpg~~~   85 (231)
                      +++.|.+++
T Consensus        88 ~~q~~~~~~   96 (249)
T PRK14253         88 VFQKPNPFP   96 (249)
T ss_pred             EecCCCcCc
Confidence            888888775

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.09  E-value=6.4e-11  Score=94.69  Aligned_cols=78  Identities=17%  Similarity=0.141  Sum_probs=54.2

Q ss_pred             cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceee-----eeeeEE------eeCCcEEE
Q 038053            8 RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTC-----EMKTTV------LKDGQVVN   76 (231)
Q Consensus         8 ~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~-----~~~~~~------~~~~~~~~   76 (231)
                      ..++++++|++.+|  .+++|+|+||+|||||+++|+|...+    ..|.++...     ......      .......+
T Consensus        21 ~~il~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~i~G~~~~----~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~   94 (224)
T TIGR02324        21 LPVLKNVSLTVNAG--ECVALSGPSGAGKSTLLKSLYANYLP----DSGRILVRHEGAWVDLAQASPREVLEVRRKTIGY   94 (224)
T ss_pred             eEEEecceEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CCCeEEEecCCCccchhhcCHHHHHHHHhcceEE
Confidence            47999999999999  99999999999999999999999873    333333221     000000      00134677


Q ss_pred             EEeCCCCcCCCCCch
Q 038053           77 VIDTPGLFDSSAGSE   91 (231)
Q Consensus        77 l~Dtpg~~~~~~~~~   91 (231)
                      +++.|.+++..+..+
T Consensus        95 ~~q~~~~~~~~tv~e  109 (224)
T TIGR02324        95 VSQFLRVIPRVSALE  109 (224)
T ss_pred             EecccccCCCccHHH
Confidence            888888776554433

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.09  E-value=5.5e-11  Score=97.18  Aligned_cols=83  Identities=12%  Similarity=0.036  Sum_probs=56.7

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc-ccccCCCCcceeeeeee-----EEeeCCcEE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF-KASADSSGVTKTCEMKT-----TVLKDGQVV   75 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~-~~~~~~~~~t~~~~~~~-----~~~~~~~~~   75 (231)
                      ++.|+++.++++++|++++|  .+++|+|+||+|||||+++|+|...+ ...+..|.++.......     .........
T Consensus        19 ~~~~~~~~~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~   96 (259)
T PRK14274         19 NLWYGQHHALKNINLSIPEN--EVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIG   96 (259)
T ss_pred             EEEECCeeeEEeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceE
Confidence            56777788999999999999  99999999999999999999998652 00012333333221110     000124467


Q ss_pred             EEEeCCCCcCC
Q 038053           76 NVIDTPGLFDS   86 (231)
Q Consensus        76 ~l~Dtpg~~~~   86 (231)
                      ++++.|.+++.
T Consensus        97 ~v~q~~~~~~~  107 (259)
T PRK14274         97 MVFQKGNPFPQ  107 (259)
T ss_pred             EEecCCccccc
Confidence            78888887763

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.09  E-value=6.5e-11  Score=97.40  Aligned_cols=46  Identities=17%  Similarity=0.027  Sum_probs=42.8

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF   49 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~   49 (231)
                      ++.|+++.++++++|++.+|  .+++|+|+||||||||+++|+|...+
T Consensus         8 ~~~~~~~~il~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p   53 (271)
T PRK13638          8 WFRYQDEPVLKGLNLDFSLS--PVTGLVGANGCGKSTLFMNLSGLLRP   53 (271)
T ss_pred             EEEcCCcccccceEEEEcCC--CEEEEECCCCCCHHHHHHHHcCCCCC
Confidence            56788888999999999999  99999999999999999999999873

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.09  E-value=7e-11  Score=105.51  Aligned_cols=84  Identities=21%  Similarity=0.103  Sum_probs=59.3

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE----EeeCCcEEEE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT----VLKDGQVVNV   77 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~l   77 (231)
                      ++.|+++.+|++++|++++|  .+++|+|+||||||||+++|+|...+    ..|.+.........    ........++
T Consensus        18 ~~~~~~~~il~~vsl~i~~G--e~~~liG~NGsGKSTLl~~l~Gl~~p----~~G~i~~~g~~~~~~~~~~~~~~~i~~v   91 (510)
T PRK15439         18 SKQYSGVEVLKGIDFTLHAG--EVHALLGGNGAGKSTLMKIIAGIVPP----DSGTLEIGGNPCARLTPAKAHQLGIYLV   91 (510)
T ss_pred             EEEeCCceeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CceEEEECCEECCCCCHHHHHhCCEEEE
Confidence            56788888999999999999  99999999999999999999999873    33333322111000    0001235678


Q ss_pred             EeCCCCcCCCCCch
Q 038053           78 IDTPGLFDSSAGSE   91 (231)
Q Consensus        78 ~Dtpg~~~~~~~~~   91 (231)
                      ++.|.+++..++.+
T Consensus        92 ~q~~~~~~~~tv~e  105 (510)
T PRK15439         92 PQEPLLFPNLSVKE  105 (510)
T ss_pred             eccCccCCCCcHHH
Confidence            88887776555444

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.08  E-value=7.9e-11  Score=95.91  Aligned_cols=82  Identities=20%  Similarity=0.155  Sum_probs=56.1

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcccc-ccCCCCcceeeeeee-----EEeeCCcEE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKA-SADSSGVTKTCEMKT-----TVLKDGQVV   75 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~-~~~~~~~t~~~~~~~-----~~~~~~~~~   75 (231)
                      ++.|+++.+|++++|++.+|  ..++|+|+||+|||||+++|+|...+.. .+..|.+........     .........
T Consensus        13 ~~~~~~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~   90 (253)
T PRK14261         13 NLWYGEKHALYDITISIPKN--RVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIG   90 (253)
T ss_pred             EEEECCeeeeeeeEEEECCC--cEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEE
Confidence            56778888999999999999  9999999999999999999999754210 001233332221100     001124467


Q ss_pred             EEEeCCCCcC
Q 038053           76 NVIDTPGLFD   85 (231)
Q Consensus        76 ~l~Dtpg~~~   85 (231)
                      ++++.|.+++
T Consensus        91 ~~~q~~~~~~  100 (253)
T PRK14261         91 MVFQRPNPFP  100 (253)
T ss_pred             EEecCCccCc
Confidence            8889888775

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.08  E-value=4.8e-11  Score=97.58  Aligned_cols=82  Identities=16%  Similarity=0.105  Sum_probs=56.2

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccc-cccCCCCcceeeeeee-E----EeeCCcEE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFK-ASADSSGVTKTCEMKT-T----VLKDGQVV   75 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~-~~~~~~~~t~~~~~~~-~----~~~~~~~~   75 (231)
                      ++.|++..+++++++++++|  .+++|+|+||||||||+++|+|...+. ..+..|.+........ .    ........
T Consensus        20 ~~~~~~~~il~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~   97 (260)
T PRK10744         20 NFYYGKFHALKNINLDIAKN--QVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVG   97 (260)
T ss_pred             EEEeCCeEEeeceeEEEcCC--CEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceE
Confidence            56778778999999999999  999999999999999999999986410 0012333332221100 0    00134567


Q ss_pred             EEEeCCCCcC
Q 038053           76 NVIDTPGLFD   85 (231)
Q Consensus        76 ~l~Dtpg~~~   85 (231)
                      ++++.|.+++
T Consensus        98 ~~~q~~~~~~  107 (260)
T PRK10744         98 MVFQKPTPFP  107 (260)
T ss_pred             EEecCCccCc
Confidence            8888887765

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.08  E-value=4.7e-11  Score=98.12  Aligned_cols=45  Identities=18%  Similarity=0.138  Sum_probs=41.7

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      ++.|++..+|++++|++.+|  .+++|+|+||||||||+++|+|...
T Consensus        20 ~~~~~~~~il~~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~   64 (269)
T PRK14259         20 TISYGTFEAVKNVFCDIPRG--KVTALIGPSGCGKSTVLRSLNRMND   64 (269)
T ss_pred             EEEECCEEEEcceEEEEcCC--CEEEEECCCCCCHHHHHHHHhcccc
Confidence            56778888999999999999  9999999999999999999999865

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.08  E-value=5.8e-11  Score=108.54  Aligned_cols=47  Identities=23%  Similarity=0.260  Sum_probs=44.0

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF   49 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~   49 (231)
                      +++.|+++.+|++++|++.+|  .+++|+|+||||||||+++|+|...+
T Consensus         7 ls~~~g~~~~l~~vs~~i~~G--e~v~LvG~NGsGKSTLLkiL~G~~~p   53 (638)
T PRK10636          7 LQIRRGVRVLLDNATATINPG--QKVGLVGKNGCGKSTLLALLKNEISA   53 (638)
T ss_pred             EEEEeCCceeecCcEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            467899999999999999999  99999999999999999999998764

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.08  E-value=6.8e-11  Score=97.65  Aligned_cols=74  Identities=19%  Similarity=0.114  Sum_probs=52.8

Q ss_pred             CCCCCC--cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE---EeeCCcEEE
Q 038053            2 SSGMGE--RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT---VLKDGQVVN   76 (231)
Q Consensus         2 ~~~~~~--~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~   76 (231)
                      ++.|+.  ++++++++|++.+|  .+++|+|+||+|||||+++|+|...+    ..|.++.+......   ........+
T Consensus        12 ~~~~~~~~~~~l~~vsl~i~~G--e~~~i~G~nGaGKSTLl~~i~G~~~p----~~G~i~~~g~~i~~~~~~~~~~~i~~   85 (279)
T PRK13635         12 SFRYPDAATYALKDVSFSVYEG--EWVAIVGHNGSGKSTLAKLLNGLLLP----EAGTITVGGMVLSEETVWDVRRQVGM   85 (279)
T ss_pred             EEEeCCCCccceeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCC----CCcEEEECCEECCcCcHHHHhhheEE
Confidence            456653  56999999999999  99999999999999999999999873    44444433221100   001234677


Q ss_pred             EEeCC
Q 038053           77 VIDTP   81 (231)
Q Consensus        77 l~Dtp   81 (231)
                      +++.|
T Consensus        86 ~~q~~   90 (279)
T PRK13635         86 VFQNP   90 (279)
T ss_pred             EEeCH
Confidence            88877

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.08  E-value=9.8e-11  Score=100.51  Aligned_cols=86  Identities=17%  Similarity=0.097  Sum_probs=63.1

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEe----eCCcEEE
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVL----KDGQVVN   76 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~~   76 (231)
                      ++|.|++-.+.++++|++.+|  .+-+|+|.||||||||+++|+|...    |+.|.+-.+........    .....++
T Consensus        10 itK~f~~~~And~V~l~v~~G--eIHaLLGENGAGKSTLm~iL~G~~~----P~~GeI~v~G~~v~~~sP~dA~~~GIGM   83 (501)
T COG3845          10 ITKRFPGVVANDDVSLSVKKG--EIHALLGENGAGKSTLMKILFGLYQ----PDSGEIRVDGKEVRIKSPRDAIRLGIGM   83 (501)
T ss_pred             cEEEcCCEEecCceeeeecCC--cEEEEeccCCCCHHHHHHHHhCccc----CCcceEEECCEEeccCCHHHHHHcCCcE
Confidence            578999999999999999999  9999999999999999999999998    44554444333322211    0223456


Q ss_pred             EEeCCCCcCCCCCchH
Q 038053           77 VIDTPGLFDSSAGSEF   92 (231)
Q Consensus        77 l~Dtpg~~~~~~~~~~   92 (231)
                      +.|-+-+.+..++.++
T Consensus        84 VhQHF~Lv~~lTV~EN   99 (501)
T COG3845          84 VHQHFMLVPTLTVAEN   99 (501)
T ss_pred             Eeeccccccccchhhh
Confidence            6666666666555444

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.08  E-value=7.9e-11  Score=104.98  Aligned_cols=83  Identities=13%  Similarity=0.070  Sum_probs=58.7

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE----EeeCCcEEE
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT----VLKDGQVVN   76 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~   76 (231)
                      +++.|++..+|++++|++++|  .+++|+|+||||||||+++|+|...+    ..|.+.........    ........+
T Consensus        10 l~~~~~~~~il~~isl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p----~~G~I~~~g~~i~~~~~~~~~~~~i~~   83 (501)
T PRK11288         10 IGKTFPGVKALDDISFDCRAG--QVHALMGENGAGKSTLLKILSGNYQP----DAGSILIDGQEMRFASTTAALAAGVAI   83 (501)
T ss_pred             eEEEECCEEEEeeeeEEEeCC--cEEEEECCCCCCHHHHHHHHhCCCCC----CCCEEEECCEECCCCCHHHHHhCCEEE
Confidence            356788888999999999999  99999999999999999999999863    33333322111000    000234677


Q ss_pred             EEeCCCCcCCCCC
Q 038053           77 VIDTPGLFDSSAG   89 (231)
Q Consensus        77 l~Dtpg~~~~~~~   89 (231)
                      +++.|.+++..+.
T Consensus        84 v~q~~~~~~~~tv   96 (501)
T PRK11288         84 IYQELHLVPEMTV   96 (501)
T ss_pred             EEechhccCCCCH
Confidence            8888877765443

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.08  E-value=1e-09  Score=90.08  Aligned_cols=106  Identities=21%  Similarity=0.343  Sum_probs=69.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHh---CCCccccc-------------cCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCC
Q 038053           25 TVVLLGRTGNGKSATGNSIL---GRKAFKAS-------------ADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSA   88 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~---g~~~~~~~-------------~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~   88 (231)
                      +|+++|++|+|||||+++|+   |.......             ....++|.........+ .+..+.++||||..+   
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~~d---   76 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW-KDHRINIIDTPGHVD---   76 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE-CCEEEEEEECCCcHH---
Confidence            48999999999999999996   43221110             11235555555556666 788899999999764   


Q ss_pred             CchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHH
Q 038053           89 GSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELK  143 (231)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~  143 (231)
                              +......++..+|++++|+|+..++...+..     .....|.+ .++|++|
T Consensus        77 --------f~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~i-vviNK~D  127 (270)
T cd01886          77 --------FTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRI-AFVNKMD  127 (270)
T ss_pred             --------HHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEECCC
Confidence                    1122333446679999999998777766544     23344554 3455555

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.08  E-value=5.5e-11  Score=97.66  Aligned_cols=82  Identities=20%  Similarity=0.136  Sum_probs=56.0

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcccc-ccCCCCcceeeeeee---E--EeeCCcEE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKA-SADSSGVTKTCEMKT---T--VLKDGQVV   75 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~-~~~~~~~t~~~~~~~---~--~~~~~~~~   75 (231)
                      ++.|++..++++++|++.+|  .+++|+|+||||||||+++|+|...... .+..|.+........   .  ........
T Consensus        28 ~~~~~~~~il~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~  105 (268)
T PRK14248         28 SIYYGEKRAVNDISMDIEKH--AVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIG  105 (268)
T ss_pred             EEEeCCceeeeceEEEEcCC--CEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEE
Confidence            56788888999999999999  9999999999999999999999742100 012333322211100   0  01134567


Q ss_pred             EEEeCCCCcC
Q 038053           76 NVIDTPGLFD   85 (231)
Q Consensus        76 ~l~Dtpg~~~   85 (231)
                      ++++.|.+++
T Consensus       106 ~v~q~~~~~~  115 (268)
T PRK14248        106 MVFQKPNPFP  115 (268)
T ss_pred             EEecCCccCc
Confidence            8888888775

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.08  E-value=7.9e-11  Score=93.04  Aligned_cols=78  Identities=14%  Similarity=0.100  Sum_probs=55.4

Q ss_pred             CCCCCC--cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-E--EeeCCcEEE
Q 038053            2 SSGMGE--RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-T--VLKDGQVVN   76 (231)
Q Consensus         2 ~~~~~~--~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-~--~~~~~~~~~   76 (231)
                      +++|+.  ..+++++++.+++|  .+++|+|+||+|||||+++|+|...+    ..|.+........ .  ........+
T Consensus        13 ~~~~~~~~~~~l~~isl~i~~G--~~~~i~G~nGsGKSTLl~~l~Gl~~~----~~G~i~~~g~~~~~~~~~~~~~~i~~   86 (207)
T cd03369          13 SVRYAPDLPPVLKNVSFKVKAG--EKIGIVGRTGAGKSTLILALFRFLEA----EEGKIEIDGIDISTIPLEDLRSSLTI   86 (207)
T ss_pred             EEEeCCCCcccccCceEEECCC--CEEEEECCCCCCHHHHHHHHhcccCC----CCCeEEECCEEhHHCCHHHHHhhEEE
Confidence            455654  47999999999999  99999999999999999999999773    3444433221100 0  001245677


Q ss_pred             EEeCCCCcC
Q 038053           77 VIDTPGLFD   85 (231)
Q Consensus        77 l~Dtpg~~~   85 (231)
                      +++.|.+++
T Consensus        87 v~q~~~~~~   95 (207)
T cd03369          87 IPQDPTLFS   95 (207)
T ss_pred             EecCCcccC
Confidence            888887765

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.07  E-value=1.4e-09  Score=83.13  Aligned_cols=137  Identities=13%  Similarity=0.081  Sum_probs=75.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeee-eeeEEee-CCcEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCE-MKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~-~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+++|++|||||||++.+++..-.    .....|.... ....... ....+.++||||......        +   .
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~---~   66 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFP----EVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDR--------L---R   66 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCC----CCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhh--------c---c
Confidence            57999999999999999999986532    1111121111 1122221 123567899999643110        1   1


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHh---------------------hHHHHHh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKR---------------------GATELRD  151 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~---------------------~~~~l~~  151 (231)
                      ...+..+|+++++++.++.-+.....         .....|++ .+.++.+.                     ....+..
T Consensus        67 ~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~  145 (175)
T cd01870          67 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII-LVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMAN  145 (175)
T ss_pred             ccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEE-EEeeChhcccChhhhhhhhhccCCCccHHHHHHHHH
Confidence            12346789999999987432211111         11233333 22233221                     0011222


Q ss_pred             hcc--chhhhhhhhHhhHHHHHHHHHH
Q 038053          152 QQA--EVDSLKEYSKQEISKLMGQMQE  176 (231)
Q Consensus       152 ~~~--~i~~is~~~~~~i~~l~~~i~~  176 (231)
                      ..+  +++.+||++|.|+++++..+..
T Consensus       146 ~~~~~~~~~~Sa~~~~~v~~lf~~l~~  172 (175)
T cd01870         146 KIGAFGYMECSAKTKEGVREVFEMATR  172 (175)
T ss_pred             HcCCcEEEEeccccCcCHHHHHHHHHH
Confidence            222  5677899999999999888764

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.07  E-value=1.1e-10  Score=95.75  Aligned_cols=69  Identities=14%  Similarity=0.150  Sum_probs=49.4

Q ss_pred             cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee---EEeeCCcEEEEEeCCC
Q 038053            8 RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT---TVLKDGQVVNVIDTPG   82 (231)
Q Consensus         8 ~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~l~Dtpg   82 (231)
                      .+++++++|++++|  .+++|+|+||||||||+++|+|...+    ..|.++.......   ........+++++.|.
T Consensus        26 ~~~l~~vsl~i~~G--e~~~i~G~NGsGKSTLl~~l~Gl~~p----~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~   97 (267)
T PRK15112         26 VEAVKPLSFTLREG--QTLAIIGENGSGKSTLAKMLAGMIEP----TSGELLIDDHPLHFGDYSYRSQRIRMIFQDPS   97 (267)
T ss_pred             cceeeeeeEEecCC--CEEEEEcCCCCCHHHHHHHHhCCCCC----CCCEEEECCEECCCCchhhHhccEEEEecCch
Confidence            57999999999999  99999999999999999999999873    3443333221110   0010234677788765

>cd04148 RGK RGK subfamily

Probab=99.07  E-value=6.7e-10  Score=88.68  Aligned_cols=139  Identities=17%  Similarity=0.104  Sum_probs=77.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcc-ccccCCCCcceeeeeeeEEe-eCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAF-KASADSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~-~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      +|+++|.+|+|||||++.+++.... ......++..  ........ .....+.++||||...      .+.    .   
T Consensus         2 KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~--~~~~~i~~~~~~~~l~i~Dt~G~~~------~~~----~---   66 (221)
T cd04148           2 RVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDD--TYERTVSVDGEESTLVVIDHWEQEM------WTE----D---   66 (221)
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCcCccCcCCCcccc--ceEEEEEECCEEEEEEEEeCCCcch------HHH----h---
Confidence            6999999999999999999754331 1101111101  11111111 1235577999999761      111    1   


Q ss_pred             hhcC-CccEEEEEEECCCCCCHHHHH--------h--cCCCCcHHHHHHHHHhhH---------HHHHhhcc-chhhhhh
Q 038053          103 LAKG-GIHAVLVVFSVRSRFSQEEEA--------A--NGGQPYTDEFLAELKRGA---------TELRDQQA-EVDSLKE  161 (231)
Q Consensus       103 ~~~~-~~~~il~vvd~~~~~~~~~~~--------~--~~~~~~~~~~~~~~~~~~---------~~l~~~~~-~i~~is~  161 (231)
                      ..+. .+|++++|+|+++.-+.....        .  ....|++ .+.++.|...         ..+....+ +++.+|+
T Consensus        67 ~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~pii-lV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA  145 (221)
T cd04148          67 SCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPII-LVGNKSDLARSREVSVQEGRACAVVFDCKFIETSA  145 (221)
T ss_pred             HHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEEChhccccceecHHHHHHHHHHcCCeEEEecC
Confidence            1123 789999999998543322111        1  1233443 3444444210         11211112 5677899


Q ss_pred             hhHhhHHHHHHHHHHHHH
Q 038053          162 YSKQEISKLMGQMQESYE  179 (231)
Q Consensus       162 ~~~~~i~~l~~~i~~~~~  179 (231)
                      .++.|+++++..+.....
T Consensus       146 ~~~~gv~~l~~~l~~~~~  163 (221)
T cd04148         146 GLQHNVDELLEGIVRQIR  163 (221)
T ss_pred             CCCCCHHHHHHHHHHHHH
Confidence            999999999988876553

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>PRK12735 elongation factor Tu; Reviewed

Probab=99.07  E-value=3.5e-09  Score=91.66  Aligned_cols=91  Identities=18%  Similarity=0.189  Sum_probs=61.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccc--------------ccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKA--------------SADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAG   89 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~   89 (231)
                      .+|+++|+.++|||||+++|++......              .....+.|.+........ .+..+.++||||..     
T Consensus        13 ~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~-~~~~i~~iDtPGh~-----   86 (396)
T PRK12735         13 VNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYET-ANRHYAHVDCPGHA-----   86 (396)
T ss_pred             EEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcC-CCcEEEEEECCCHH-----
Confidence            7899999999999999999997311000              011345565544333333 56678899999953     


Q ss_pred             chHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHH
Q 038053           90 SEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEE  126 (231)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~  126 (231)
                            .+...+......+|.+++|+|+..++.....
T Consensus        87 ------~f~~~~~~~~~~aD~~llVvda~~g~~~qt~  117 (396)
T PRK12735         87 ------DYVKNMITGAAQMDGAILVVSAADGPMPQTR  117 (396)
T ss_pred             ------HHHHHHHhhhccCCEEEEEEECCCCCchhHH
Confidence                  2333344455788999999999866665543

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.07  E-value=1e-09  Score=88.42  Aligned_cols=89  Identities=21%  Similarity=0.286  Sum_probs=57.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccc---cCC-------------CCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCC
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKAS---ADS-------------SGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSA   88 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~---~~~-------------~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~   88 (231)
                      +|+++|+.|+|||||+++|+........   ...             .+.|.........+ .+..+.++||||..+.  
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~-~~~~i~liDTPG~~~f--   77 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQW-EDTKVNLIDTPGHMDF--   77 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEE-CCEEEEEEeCCCccch--
Confidence            4899999999999999999865322110   111             12222223334445 6788999999998652  


Q ss_pred             CchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHH
Q 038053           89 GSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEE  125 (231)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~  125 (231)
                           ...    ....+..+|.+++|+|+.+++....
T Consensus        78 -----~~~----~~~~l~~aD~~IlVvd~~~g~~~~~  105 (237)
T cd04168          78 -----IAE----VERSLSVLDGAILVISAVEGVQAQT  105 (237)
T ss_pred             -----HHH----HHHHHHHhCeEEEEEeCCCCCCHHH
Confidence                 112    2233456799999999987766543

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.07  E-value=9.2e-11  Score=99.90  Aligned_cols=85  Identities=15%  Similarity=0.189  Sum_probs=59.8

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-------EEeeCCc
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-------TVLKDGQ   73 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-------~~~~~~~   73 (231)
                      ++++|++..+  +++|++++|  .+++|+|+||||||||+++|+|...+    ..|.+........       .......
T Consensus         6 l~k~~~~~~~--~vsl~i~~G--e~~~l~G~nGsGKSTLl~~iaGl~~p----~~G~I~~~g~~~~~~~~~~~~~~~~~~   77 (352)
T PRK11144          6 FKQQLGDLCL--TVNLTLPAQ--GITAIFGRSGAGKTSLINAISGLTRP----QKGRIVLNGRVLFDAEKGICLPPEKRR   77 (352)
T ss_pred             EEEEeCCEEE--EEEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CceEEEECCEEccccccccccchhhCC
Confidence            3677877543  899999999  99999999999999999999999873    3333332221100       0011345


Q ss_pred             EEEEEeCCCCcCCCCCchHH
Q 038053           74 VVNVIDTPGLFDSSAGSEFV   93 (231)
Q Consensus        74 ~~~l~Dtpg~~~~~~~~~~~   93 (231)
                      ..++++.+.+++..+..+++
T Consensus        78 i~~v~q~~~l~~~~tv~enl   97 (352)
T PRK11144         78 IGYVFQDARLFPHYKVRGNL   97 (352)
T ss_pred             EEEEcCCcccCCCCcHHHHH
Confidence            67889999988876655544

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.07  E-value=7.2e-11  Score=96.90  Aligned_cols=82  Identities=15%  Similarity=0.079  Sum_probs=56.5

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcccc-ccCCCCcceeeeeeeE-----EeeCCcEE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKA-SADSSGVTKTCEMKTT-----VLKDGQVV   75 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~-~~~~~~~t~~~~~~~~-----~~~~~~~~   75 (231)
                      ++.|+++++|++++|++.+|  .+++|+|+||||||||+++|+|...+.. .+..|.+..+......     ........
T Consensus        27 ~~~~~~~~il~~vsl~i~~G--e~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~  104 (267)
T PRK14237         27 HVYYGKKEAIKGIDMQFEKN--KITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIG  104 (267)
T ss_pred             EEEECCeeeEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceE
Confidence            45677888999999999999  9999999999999999999999875210 0123333322211100     00123467


Q ss_pred             EEEeCCCCcC
Q 038053           76 NVIDTPGLFD   85 (231)
Q Consensus        76 ~l~Dtpg~~~   85 (231)
                      ++++.|.+++
T Consensus       105 ~v~q~~~~~~  114 (267)
T PRK14237        105 MVFQRPNPFA  114 (267)
T ss_pred             EEecCCcccc
Confidence            7888887765

>PLN03108 Rab family protein; Provisional

Probab=99.07  E-value=3.8e-09  Score=83.63  Aligned_cols=139  Identities=13%  Similarity=0.119  Sum_probs=76.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+|+|++|+|||||+|.+++......  ..+....+........ .+  ..+.++||||...           +....
T Consensus         7 ~kivivG~~gvGKStLi~~l~~~~~~~~--~~~ti~~~~~~~~i~~-~~~~i~l~l~Dt~G~~~-----------~~~~~   72 (210)
T PLN03108          7 FKYIIIGDTGVGKSCLLLQFTDKRFQPV--HDLTIGVEFGARMITI-DNKPIKLQIWDTAGQES-----------FRSIT   72 (210)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCC--CCCCccceEEEEEEEE-CCEEEEEEEEeCCCcHH-----------HHHHH
Confidence            6899999999999999999998753211  1121111111112222 22  3467899999543           11111


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKEY  162 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~~  162 (231)
                      ...+..+|++++|+|+++.-+.....         .....|++ .+.++.+..         ...+..... +++.+|++
T Consensus        73 ~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~pii-iv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~  151 (210)
T PLN03108         73 RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIM-LIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAK  151 (210)
T ss_pred             HHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEE-EEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCC
Confidence            22335689999999998432222211         11123332 223332210         012222222 56778999


Q ss_pred             hHhhHHHHHHHHHHH
Q 038053          163 SKQEISKLMGQMQES  177 (231)
Q Consensus       163 ~~~~i~~l~~~i~~~  177 (231)
                      ++.++.+++..+...
T Consensus       152 ~~~~v~e~f~~l~~~  166 (210)
T PLN03108        152 TAQNVEEAFIKTAAK  166 (210)
T ss_pred             CCCCHHHHHHHHHHH
Confidence            999999987666543

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.07  E-value=1.3e-10  Score=90.58  Aligned_cols=43  Identities=21%  Similarity=0.169  Sum_probs=39.9

Q ss_pred             CCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053            5 MGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF   49 (231)
Q Consensus         5 ~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~   49 (231)
                      ++++.++++++|++.+|  .+++|+|+||||||||+++|+|...+
T Consensus         2 ~~~~~il~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~   44 (190)
T TIGR01166         2 PGGPEVLKGLNFAAERG--EVLALLGANGAGKSTLLLHLNGLLRP   44 (190)
T ss_pred             CCccceecceeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            46778999999999999  99999999999999999999999873

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.07  E-value=3e-09  Score=95.82  Aligned_cols=90  Identities=18%  Similarity=0.252  Sum_probs=56.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEee-----------------CCcEEEEEeCCCCcCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLK-----------------DGQVVNVIDTPGLFDS   86 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~l~Dtpg~~~~   86 (231)
                      +.|+++|++|+|||||+|.|++......  ..+++|...........                 ....+.++||||... 
T Consensus         5 piV~IiG~~d~GKTSLln~l~~~~v~~~--e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~-   81 (590)
T TIGR00491         5 PIVSVLGHVDHGKTTLLDKIRGSAVAKR--EAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEA-   81 (590)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccccccc--cCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHh-
Confidence            5899999999999999999999854221  23334432111111110                 012378999999543 


Q ss_pred             CCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHH
Q 038053           87 SAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEE  126 (231)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~  126 (231)
                                +.......+..+|++++|+|+++++.....
T Consensus        82 ----------f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~  111 (590)
T TIGR00491        82 ----------FTNLRKRGGALADLAILIVDINEGFKPQTQ  111 (590)
T ss_pred             ----------HHHHHHHHHhhCCEEEEEEECCcCCCHhHH
Confidence                      111122234678999999999876655543

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>cd04118 Rab24 Rab24 subfamily

Probab=99.07  E-value=3.8e-09  Score=82.29  Aligned_cols=138  Identities=16%  Similarity=0.176  Sum_probs=77.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeee--eeEEeeCCc--EEEEEeCCCCcCCCCCchHHHHHHHHH
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEM--KTTVLKDGQ--VVNVIDTPGLFDSSAGSEFVGKEIVKR  100 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~~~~--~~~l~Dtpg~~~~~~~~~~~~~~~~~~  100 (231)
                      +|+++|.+|+|||||++.+++.....   .....|.....  ..... .+.  .+.++||||.....        .+   
T Consensus         2 ki~vvG~~~vGKSsLi~~~~~~~~~~---~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~--------~~---   66 (193)
T cd04118           2 KVVMLGKESVGKTSLVERYVHHRFLV---GPYQNTIGAAFVAKRMVV-GERVVTLGIWDTAGSERYE--------AM---   66 (193)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCcCC---cCcccceeeEEEEEEEEE-CCEEEEEEEEECCCchhhh--------hh---
Confidence            69999999999999999999865321   11112221111  11222 332  35588999964311        11   


Q ss_pred             HhhhcCCccEEEEEEECCCCCCHHHHH--------hcCCCCcHHHHHHHHHhh-------------HHHHHhhc-cchhh
Q 038053          101 IGLAKGGIHAVLVVFSVRSRFSQEEEA--------ANGGQPYTDEFLAELKRG-------------ATELRDQQ-AEVDS  158 (231)
Q Consensus       101 ~~~~~~~~~~il~vvd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~-------------~~~l~~~~-~~i~~  158 (231)
                      ....+..+|++++|+|+++.-+.....        .....|++ .+.++.|..             ...+.... .+++.
T Consensus        67 ~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~pii-lv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~  145 (193)
T cd04118          67 SRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIY-LCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFE  145 (193)
T ss_pred             hHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEE-EEEEcccccccccccCccCHHHHHHHHHHcCCeEEE
Confidence            122346789999999998432222111        11123333 233333310             01111111 25677


Q ss_pred             hhhhhHhhHHHHHHHHHHHH
Q 038053          159 LKEYSKQEISKLMGQMQESY  178 (231)
Q Consensus       159 is~~~~~~i~~l~~~i~~~~  178 (231)
                      +|+.++.|+++++..+...+
T Consensus       146 ~Sa~~~~gv~~l~~~i~~~~  165 (193)
T cd04118         146 TSSKTGQNVDELFQKVAEDF  165 (193)
T ss_pred             EeCCCCCCHHHHHHHHHHHH
Confidence            89999999999998887654

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.06  E-value=7.5e-11  Score=91.17  Aligned_cols=46  Identities=28%  Similarity=0.354  Sum_probs=42.2

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF   49 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~   49 (231)
                      ++.|+++.+|+++++++.+|  .+++|+|+||+|||||+++|+|...+
T Consensus         6 ~~~~~~~~~l~~~~~~i~~G--~~~~l~G~nGsGKStLl~~i~G~~~~   51 (180)
T cd03214           6 SVGYGGRTVLDDLSLSIEAG--EIVGILGPNGAGKSTLLKTLAGLLKP   51 (180)
T ss_pred             EEEECCeeeEeeeEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            45677778999999999999  99999999999999999999999773

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.06  E-value=8e-11  Score=95.80  Aligned_cols=86  Identities=19%  Similarity=0.097  Sum_probs=57.5

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc--cccccCCCCcceeeeee-e----EEeeCCcE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA--FKASADSSGVTKTCEMK-T----TVLKDGQV   74 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~--~~~~~~~~~~t~~~~~~-~----~~~~~~~~   74 (231)
                      +++|+++.++++++|++.+|  .+++|+|+||||||||+++|+|...  +. .+..|.+....... .    ........
T Consensus        12 ~~~~~~~~~l~~~s~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~-~~~~G~i~~~g~~~~~~~~~~~~~~~~i   88 (252)
T PRK14239         12 SVYYNKKKALNSVSLDFYPN--EITALIGPSGSGKSTLLRSINRMNDLNPE-VTITGSIVYNGHNIYSPRTDTVDLRKEI   88 (252)
T ss_pred             EEEECCeeeeeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHhcccccCCC-CCccceEEECCEECcCcccchHhhhhcE
Confidence            56777788999999999999  9999999999999999999999742  21 00123232221110 0    00113457


Q ss_pred             EEEEeCCCCcCCCCCch
Q 038053           75 VNVIDTPGLFDSSAGSE   91 (231)
Q Consensus        75 ~~l~Dtpg~~~~~~~~~   91 (231)
                      .++++.|.+++ .+..+
T Consensus        89 ~~v~q~~~~~~-~tv~e  104 (252)
T PRK14239         89 GMVFQQPNPFP-MSIYE  104 (252)
T ss_pred             EEEecCCccCc-CcHHH
Confidence            78888888776 34333

>cd01893 Miro1 Miro1 subfamily

Probab=99.06  E-value=2.5e-09  Score=81.29  Aligned_cols=138  Identities=14%  Similarity=0.097  Sum_probs=76.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhh
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLA  104 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~  104 (231)
                      +|+++|.+|||||||+|.+.+......   .+..................+.++||||.....        ..   ....
T Consensus         2 kv~ivG~~~vGKTsl~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--------~~---~~~~   67 (166)
T cd01893           2 RIVLIGDEGVGKSSLIMSLVSEEFPEN---VPRVLPEITIPADVTPERVPTTIVDTSSRPQDR--------AN---LAAE   67 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCcCCcc---CCCcccceEeeeeecCCeEEEEEEeCCCchhhh--------HH---Hhhh
Confidence            689999999999999999988653211   111110001100011134567899999975411        11   1122


Q ss_pred             cCCccEEEEEEECCCCCCHHHH---H------hcCCCCcHHHHHHHHHhhH-----------HHHHhhc---cchhhhhh
Q 038053          105 KGGIHAVLVVFSVRSRFSQEEE---A------ANGGQPYTDEFLAELKRGA-----------TELRDQQ---AEVDSLKE  161 (231)
Q Consensus       105 ~~~~~~il~vvd~~~~~~~~~~---~------~~~~~~~~~~~~~~~~~~~-----------~~l~~~~---~~i~~is~  161 (231)
                      +..+|++++|+|+++.-+....   .      .....|++ .+.++.|...           ..+....   .+++.+|+
T Consensus        68 ~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pvi-iv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa  146 (166)
T cd01893          68 IRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPII-LVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSA  146 (166)
T ss_pred             cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE-EEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEecc
Confidence            4678999999999854333221   1      11223333 2334433110           1111111   25667899


Q ss_pred             hhHhhHHHHHHHHHHH
Q 038053          162 YSKQEISKLMGQMQES  177 (231)
Q Consensus       162 ~~~~~i~~l~~~i~~~  177 (231)
                      .++.|+++++..+.+.
T Consensus       147 ~~~~~v~~lf~~~~~~  162 (166)
T cd01893         147 KTLINVSEVFYYAQKA  162 (166)
T ss_pred             ccccCHHHHHHHHHHH
Confidence            9999999998887663

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.06  E-value=1e-10  Score=90.41  Aligned_cols=48  Identities=19%  Similarity=0.234  Sum_probs=43.2

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcccc
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKA   51 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~   51 (231)
                      |....++.+++++++.+.+|  ...+|+||||+|||||++.|+|...+.+
T Consensus         8 s~~~~Gr~ll~~vsl~~~pG--ev~ailGPNGAGKSTlLk~LsGel~p~~   55 (259)
T COG4559           8 SYSLAGRRLLDGVSLDLRPG--EVLAILGPNGAGKSTLLKALSGELSPDS   55 (259)
T ss_pred             EEEeecceeccCcceeccCC--cEEEEECCCCccHHHHHHHhhCccCCCC
Confidence            34567899999999999999  9999999999999999999999988443

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.06  E-value=7.1e-11  Score=94.18  Aligned_cols=77  Identities=13%  Similarity=0.122  Sum_probs=54.6

Q ss_pred             cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-EE-----eeCCcEEEEEeCC
Q 038053            8 RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-TV-----LKDGQVVNVIDTP   81 (231)
Q Consensus         8 ~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-~~-----~~~~~~~~l~Dtp   81 (231)
                      ..++++++|++.+|  .+++|+|+||+|||||+++|+|...+    ..|.+........ ..     ......+++++.|
T Consensus        18 ~~il~~vs~~i~~G--~~~~I~G~nGsGKStLl~~l~G~~~~----~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~   91 (220)
T TIGR02982        18 KQVLFDINLEINPG--EIVILTGPSGSGKTTLLTLIGGLRSV----QEGSLKVLGQELYGASEKELVQLRRNIGYIFQAH   91 (220)
T ss_pred             eeEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CCeEEEECCEEhHhcCHhHHHHHHhheEEEcCCh
Confidence            67999999999999  99999999999999999999998763    3333332221110 00     0124567788888


Q ss_pred             CCcCCCCCc
Q 038053           82 GLFDSSAGS   90 (231)
Q Consensus        82 g~~~~~~~~   90 (231)
                      .+++..+..
T Consensus        92 ~~~~~~t~~  100 (220)
T TIGR02982        92 NLLGFLTAR  100 (220)
T ss_pred             hhcCCCCHH
Confidence            887644433

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.06  E-value=1.6e-10  Score=94.11  Aligned_cols=82  Identities=18%  Similarity=0.101  Sum_probs=55.9

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc-ccccCCCCcceeeeeee-----EEeeCCcEE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF-KASADSSGVTKTCEMKT-----TVLKDGQVV   75 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~-~~~~~~~~~t~~~~~~~-----~~~~~~~~~   75 (231)
                      +++|+.+.++++++|++.+|  .+++|+|+||+|||||+++|+|.... ...+..|.+........     .........
T Consensus        12 ~~~~~~~~~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~   89 (252)
T PRK14255         12 HLFYGKFEALKGIDLDFNQN--EITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVG   89 (252)
T ss_pred             EEEECCeeEEecceEEEcCC--CEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEE
Confidence            56788888999999999999  99999999999999999999997531 10001232222211100     000134577


Q ss_pred             EEEeCCCCcC
Q 038053           76 NVIDTPGLFD   85 (231)
Q Consensus        76 ~l~Dtpg~~~   85 (231)
                      ++++.|.+++
T Consensus        90 ~~~q~~~~~~   99 (252)
T PRK14255         90 MVFQQPNPFP   99 (252)
T ss_pred             EEECCCccCC
Confidence            8899888776

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.06  E-value=1.1e-10  Score=96.09  Aligned_cols=82  Identities=16%  Similarity=0.084  Sum_probs=56.2

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcccc-ccCCCCcceeeeeee-----EEeeCCcEE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKA-SADSSGVTKTCEMKT-----TVLKDGQVV   75 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~-~~~~~~~t~~~~~~~-----~~~~~~~~~   75 (231)
                      +++|+++.+|++++|++.+|  .+++|+|+||+|||||+++|+|...+.. .+..|.++.......     .........
T Consensus        27 ~~~~~~~~~l~~vs~~i~~G--e~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~  104 (274)
T PRK14265         27 KVFYGGFLALVDVHLKIPAK--KIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVG  104 (274)
T ss_pred             EEEeCCeEEEeeeeeEEcCC--CEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEE
Confidence            56778788999999999999  9999999999999999999999864210 011333332221100     001134567


Q ss_pred             EEEeCCCCcC
Q 038053           76 NVIDTPGLFD   85 (231)
Q Consensus        76 ~l~Dtpg~~~   85 (231)
                      ++++.|.+++
T Consensus       105 ~v~q~~~l~~  114 (274)
T PRK14265        105 MVFQRPNPFP  114 (274)
T ss_pred             EEccCCcccc
Confidence            8888888775

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.06  E-value=1.5e-10  Score=93.15  Aligned_cols=80  Identities=23%  Similarity=0.144  Sum_probs=54.4

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-EEeeCCcEEEEEeC
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-TVLKDGQVVNVIDT   80 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~Dt   80 (231)
                      ++.|++..  .+++|++.+|  .+++|+|+||+|||||+++|+|...+    ..|.+........ .........++++.
T Consensus         8 ~~~~~~~~--~~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~----~~G~i~~~g~~~~~~~~~~~~i~~~~q~   79 (232)
T PRK10771          8 TWLYHHLP--MRFDLTVERG--ERVAILGPSGAGKSTLLNLIAGFLTP----ASGSLTLNGQDHTTTPPSRRPVSMLFQE   79 (232)
T ss_pred             EEEECCcc--ceeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CCceEEECCeecCcCChhhccEEEEecc
Confidence            45676543  3899999999  99999999999999999999999873    3333332221100 00002346778888


Q ss_pred             CCCcCCCCC
Q 038053           81 PGLFDSSAG   89 (231)
Q Consensus        81 pg~~~~~~~   89 (231)
                      |++++..+.
T Consensus        80 ~~~~~~~tv   88 (232)
T PRK10771         80 NNLFSHLTV   88 (232)
T ss_pred             cccccCCcH
Confidence            888765443

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.06  E-value=7.6e-11  Score=95.89  Aligned_cols=82  Identities=15%  Similarity=0.038  Sum_probs=56.1

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc-ccccCCCCcceeeeeee---E--EeeCCcEE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF-KASADSSGVTKTCEMKT---T--VLKDGQVV   75 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~-~~~~~~~~~t~~~~~~~---~--~~~~~~~~   75 (231)
                      ++.|+.+.+++++++++.+|  .+++|+|+||||||||+++|+|...+ ...+..|.+........   .  ........
T Consensus        11 ~~~~~~~~~l~~~sl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~   88 (251)
T PRK14251         11 HLSYGNYEALHGISLDFEEK--ELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVG   88 (251)
T ss_pred             EEEECCeeeeeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEE
Confidence            56788888999999999999  99999999999999999999998641 00012232222221100   0  00133467


Q ss_pred             EEEeCCCCcC
Q 038053           76 NVIDTPGLFD   85 (231)
Q Consensus        76 ~l~Dtpg~~~   85 (231)
                      ++++.|.+++
T Consensus        89 ~~~q~~~~~~   98 (251)
T PRK14251         89 MVFQQPTPFP   98 (251)
T ss_pred             EEecCCccCC
Confidence            8888888775

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.06  E-value=7e-11  Score=97.35  Aligned_cols=75  Identities=16%  Similarity=0.046  Sum_probs=53.4

Q ss_pred             CCCCC-CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE---EeeCCcEEEE
Q 038053            2 SSGMG-ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT---VLKDGQVVNV   77 (231)
Q Consensus         2 ~~~~~-~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~l   77 (231)
                      ++.|+ +..++++++|++.+|  .+++|+|+||||||||+++|+|...+    ..|.++.+......   ........++
T Consensus        11 ~~~~~~~~~~l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p----~~G~i~~~g~~~~~~~~~~~~~~i~~v   84 (274)
T PRK13647         11 HFRYKDGTKALKGLSLSIPEG--SKTALLGPNGAGKSTLLLHLNGIYLP----QRGRVKVMGREVNAENEKWVRSKVGLV   84 (274)
T ss_pred             EEEeCCCCeeeeeEEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCC----CceEEEECCEECCCCCHHHHHhhEEEE
Confidence            55674 567999999999999  99999999999999999999999873    44444332211100   0002346778


Q ss_pred             EeCCC
Q 038053           78 IDTPG   82 (231)
Q Consensus        78 ~Dtpg   82 (231)
                      ++.|.
T Consensus        85 ~q~~~   89 (274)
T PRK13647         85 FQDPD   89 (274)
T ss_pred             ecChh
Confidence            88773

>cd04135 Tc10 TC10 subfamily

Probab=99.06  E-value=1.3e-09  Score=83.40  Aligned_cols=135  Identities=15%  Similarity=0.109  Sum_probs=75.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeee-eeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      +|+++|++|+|||||++.+++..-.    .....|..... ..... .+  ..+.++||||......        +   .
T Consensus         2 ki~i~G~~~~GKTsl~~~~~~~~~~----~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~--------~---~   65 (174)
T cd04135           2 KCVVVGDGAVGKTCLLMSYANDAFP----EEYVPTVFDHYAVSVTV-GGKQYLLGLYDTAGQEDYDR--------L---R   65 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCC----CCCCCceeeeeEEEEEE-CCEEEEEEEEeCCCcccccc--------c---c
Confidence            6999999999999999999877531    11111221111 11222 23  2356899999654221        0   1


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhh---------------------HHHHHh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRG---------------------ATELRD  151 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~---------------------~~~l~~  151 (231)
                      ...+..+|+++++++..+.-+..+..         .....|++ .+.++.|..                     +..+..
T Consensus        66 ~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~pii-vv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~  144 (174)
T cd04135          66 PLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYL-LVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAK  144 (174)
T ss_pred             cccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEE-EEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHH
Confidence            12346779999999987542221111         12233333 233443310                     011222


Q ss_pred             hcc--chhhhhhhhHhhHHHHHHHHHH
Q 038053          152 QQA--EVDSLKEYSKQEISKLMGQMQE  176 (231)
Q Consensus       152 ~~~--~i~~is~~~~~~i~~l~~~i~~  176 (231)
                      ..+  +++.+||++|.|+++++..+..
T Consensus       145 ~~~~~~~~e~Sa~~~~gi~~~f~~~~~  171 (174)
T cd04135         145 EIGAHCYVECSALTQKGLKTVFDEAIL  171 (174)
T ss_pred             HcCCCEEEEecCCcCCCHHHHHHHHHH
Confidence            222  4667899999999999887755

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.06  E-value=9.2e-11  Score=97.28  Aligned_cols=75  Identities=20%  Similarity=0.061  Sum_probs=53.4

Q ss_pred             CCCCCC-----cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE-----EeeC
Q 038053            2 SSGMGE-----RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT-----VLKD   71 (231)
Q Consensus         2 ~~~~~~-----~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~-----~~~~   71 (231)
                      ++.|+.     +.++++++|++.+|  .+++|+|+||||||||+++|+|...+    ..|.++.+......     ....
T Consensus         9 ~~~y~~~~~~~~~~l~~vs~~i~~G--e~~~i~G~nGaGKSTLl~~l~Gl~~p----~~G~i~~~g~~~~~~~~~~~~~~   82 (287)
T PRK13637          9 THIYMEGTPFEKKALDNVNIEIEDG--EFVGLIGHTGSGKSTLIQHLNGLLKP----TSGKIIIDGVDITDKKVKLSDIR   82 (287)
T ss_pred             EEECCCCCccccceeeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCC----CccEEEECCEECCCcCccHHHHh
Confidence            456653     46999999999999  99999999999999999999999873    44444333221100     0012


Q ss_pred             CcEEEEEeCCC
Q 038053           72 GQVVNVIDTPG   82 (231)
Q Consensus        72 ~~~~~l~Dtpg   82 (231)
                      ....++++.|.
T Consensus        83 ~~ig~v~q~~~   93 (287)
T PRK13637         83 KKVGLVFQYPE   93 (287)
T ss_pred             hceEEEecCch
Confidence            45677888874

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.05  E-value=1e-10  Score=96.21  Aligned_cols=82  Identities=15%  Similarity=0.086  Sum_probs=56.4

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc-ccccCCCCcceeeeeee-----EEeeCCcEE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF-KASADSSGVTKTCEMKT-----TVLKDGQVV   75 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~-~~~~~~~~~t~~~~~~~-----~~~~~~~~~   75 (231)
                      ++.|++..+|++++|++.+|  .+++|+|+||+|||||+++|+|.... ...+..|.++.......     .........
T Consensus        31 ~~~~~~~~il~~vsl~i~~G--e~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~  108 (271)
T PRK14238         31 NLWYGEDHALKNINLDIHEN--EVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVG  108 (271)
T ss_pred             EEEECCcceeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEE
Confidence            45677788999999999999  99999999999999999999998641 00012333332221100     001134577


Q ss_pred             EEEeCCCCcC
Q 038053           76 NVIDTPGLFD   85 (231)
Q Consensus        76 ~l~Dtpg~~~   85 (231)
                      ++++.|.+++
T Consensus       109 ~v~q~~~~~~  118 (271)
T PRK14238        109 MVFQKPNPFP  118 (271)
T ss_pred             EEecCCcccc
Confidence            8888888775

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.05  E-value=8.6e-11  Score=96.32  Aligned_cols=82  Identities=16%  Similarity=0.083  Sum_probs=55.4

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccc-cCCCCcceeeeeee-----EEeeCCcEE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKAS-ADSSGVTKTCEMKT-----TVLKDGQVV   75 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~-~~~~~~t~~~~~~~-----~~~~~~~~~   75 (231)
                      ++.|+..++++++++++++|  .+++|+|+||+|||||+++|+|...+... +..|.++.......     .........
T Consensus        17 ~~~~~~~~il~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~   94 (264)
T PRK14243         17 NVYYGSFLAVKNVWLDIPKN--QITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIG   94 (264)
T ss_pred             EEEECCEEEeecceEEEcCC--CEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEE
Confidence            56677788999999999999  99999999999999999999997542100 12232322221100     001133567


Q ss_pred             EEEeCCCCcC
Q 038053           76 NVIDTPGLFD   85 (231)
Q Consensus        76 ~l~Dtpg~~~   85 (231)
                      ++++.|.+++
T Consensus        95 ~v~q~~~~~~  104 (264)
T PRK14243         95 MVFQKPNPFP  104 (264)
T ss_pred             EEccCCcccc
Confidence            7888887765

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.05  E-value=1.2e-10  Score=95.89  Aligned_cols=83  Identities=16%  Similarity=0.090  Sum_probs=56.8

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcccc-ccCCCCcceeeeeee-----EEeeCCcEE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKA-SADSSGVTKTCEMKT-----TVLKDGQVV   75 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~-~~~~~~~t~~~~~~~-----~~~~~~~~~   75 (231)
                      ++.|+++.++++++|++.+|  .+++|+|+||+|||||+++|+|...+.. .+..|.+........     .........
T Consensus        32 ~~~~~~~~il~~vs~~i~~G--e~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~  109 (272)
T PRK14236         32 NLFYGDKQALFDISMRIPKN--RVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVG  109 (272)
T ss_pred             EEEECCeeEeeeEEEEEcCC--CEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEE
Confidence            56677788999999999999  9999999999999999999999865210 012333332221100     001134567


Q ss_pred             EEEeCCCCcCC
Q 038053           76 NVIDTPGLFDS   86 (231)
Q Consensus        76 ~l~Dtpg~~~~   86 (231)
                      ++++.+.+++.
T Consensus       110 ~v~q~~~l~~~  120 (272)
T PRK14236        110 MVFQRPNPFPK  120 (272)
T ss_pred             EEecCCccCcc
Confidence            88888887763

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.05  E-value=1.2e-10  Score=92.88  Aligned_cols=78  Identities=17%  Similarity=0.123  Sum_probs=53.9

Q ss_pred             CCCCCC--cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee---EEeeCCcEEE
Q 038053            2 SSGMGE--RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT---TVLKDGQVVN   76 (231)
Q Consensus         2 ~~~~~~--~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~   76 (231)
                      +++|++  +.++++++|++++|  ..++|+|+||+|||||+++|+|...+    ..|.+........   .........+
T Consensus         9 ~~~~~~~~~~~l~~i~~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~----~~G~i~~~g~~~~~~~~~~~~~~i~~   82 (221)
T cd03244           9 SLRYRPNLPPVLKNISFSIKPG--EKVGIVGRTGSGKSSLLLALFRLVEL----SSGSILIDGVDISKIGLHDLRSRISI   82 (221)
T ss_pred             EEecCCCCcccccceEEEECCC--CEEEEECCCCCCHHHHHHHHHcCCCC----CCCEEEECCEEhHhCCHHHHhhhEEE
Confidence            456653  47999999999999  99999999999999999999999773    3333332221100   0001234667


Q ss_pred             EEeCCCCcC
Q 038053           77 VIDTPGLFD   85 (231)
Q Consensus        77 l~Dtpg~~~   85 (231)
                      +++.|.+++
T Consensus        83 ~~q~~~l~~   91 (221)
T cd03244          83 IPQDPVLFS   91 (221)
T ss_pred             ECCCCcccc
Confidence            777777654

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.05  E-value=1.2e-10  Score=95.28  Aligned_cols=87  Identities=15%  Similarity=0.009  Sum_probs=58.8

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcccccc--CCCCcceeeeeee---E--EeeCCcE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASA--DSSGVTKTCEMKT---T--VLKDGQV   74 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~--~~~~~t~~~~~~~---~--~~~~~~~   74 (231)
                      ++.|++..+++++++++.+|  .+++|+|+||+|||||+++|+|...+.. +  ..|.+........   .  .......
T Consensus        14 ~~~~~~~~il~~isl~i~~G--e~~~l~G~nGsGKSTLlk~l~Gl~~~~~-~~~~~G~i~~~g~~i~~~~~~~~~~~~~i   90 (259)
T PRK14260         14 SFYYNTSKAIEGISMDIYRN--KVTAIIGPSGCGKSTFIKTLNRISELEG-PVKVEGVVDFFGQNIYDPRININRLRRQI   90 (259)
T ss_pred             EEEECCeEeecceEEEEcCC--CEEEEECCCCCCHHHHHHHHHhhcCccc-CCccceEEEECCEeccccccchHhhhhhe
Confidence            56777788999999999999  9999999999999999999999865210 0  1232332221100   0  0012457


Q ss_pred             EEEEeCCCCcCCCCCchH
Q 038053           75 VNVIDTPGLFDSSAGSEF   92 (231)
Q Consensus        75 ~~l~Dtpg~~~~~~~~~~   92 (231)
                      .++++.|.+++ .+..++
T Consensus        91 ~~v~q~~~l~~-~tv~en  107 (259)
T PRK14260         91 GMVFQRPNPFP-MSIYEN  107 (259)
T ss_pred             EEEecccccCC-ccHHHH
Confidence            78889888776 444333

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.05  E-value=1e-10  Score=95.28  Aligned_cols=46  Identities=24%  Similarity=0.208  Sum_probs=42.5

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF   49 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~   49 (231)
                      ++.|++..++++++|++++|  .+++|+|+||||||||+++|+|...+
T Consensus        10 ~~~~~~~~~l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~   55 (253)
T TIGR02323        10 SKSYGGGKGCRDVSFDLYPG--EVLGIVGESGSGKSTLLGCLAGRLAP   55 (253)
T ss_pred             EEEeCCceEeecceEEEeCC--cEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            56777778999999999999  99999999999999999999999873

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.05  E-value=2.1e-10  Score=91.05  Aligned_cols=38  Identities=18%  Similarity=0.222  Sum_probs=36.1

Q ss_pred             ccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053            9 VIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus         9 ~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      .++++++|++++|  .+++|+|+||||||||+++|+|...
T Consensus         1 ~vl~~vs~~i~~G--e~~~l~G~NGsGKSTLlk~i~Gl~~   38 (213)
T PRK15177          1 VVLDKTDFVMGYH--EHIGILAAPGSGKTTLTRLLCGLDA   38 (213)
T ss_pred             CeeeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCcc
Confidence            3689999999999  9999999999999999999999987

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.05  E-value=1.1e-10  Score=95.88  Aligned_cols=46  Identities=17%  Similarity=0.205  Sum_probs=40.9

Q ss_pred             CCCCCC--cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053            2 SSGMGE--RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF   49 (231)
Q Consensus         2 ~~~~~~--~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~   49 (231)
                      ++.|++  ..+++++++++++|  .+++|+|+||+|||||+++|+|...+
T Consensus        14 ~~~~~~~~~~~l~~isl~i~~G--e~~~I~G~nGsGKSTLl~~i~Gl~~~   61 (269)
T PRK13648         14 SFQYQSDASFTLKDVSFNIPKG--QWTSIVGHNGSGKSTIAKLMIGIEKV   61 (269)
T ss_pred             EEEcCCCCCcceeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            456754  35899999999999  99999999999999999999999873

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.05  E-value=2e-10  Score=93.48  Aligned_cols=43  Identities=21%  Similarity=0.326  Sum_probs=40.2

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      ++.|+++.+|++++|++.+|  .+++|+|+||||||||+++|+|.
T Consensus        14 ~~~~~~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~i~Gl   56 (252)
T CHL00131         14 HASVNENEILKGLNLSINKG--EIHAIMGPNGSGKSTLSKVIAGH   56 (252)
T ss_pred             EEEeCCEEeeecceeEEcCC--cEEEEECCCCCCHHHHHHHHcCC
Confidence            55677778999999999999  99999999999999999999997

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.05  E-value=1.5e-10  Score=95.87  Aligned_cols=83  Identities=17%  Similarity=0.138  Sum_probs=56.6

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcccc-ccCCCCcceeeeee-eE----EeeCCcEE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKA-SADSSGVTKTCEMK-TT----VLKDGQVV   75 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~-~~~~~~~t~~~~~~-~~----~~~~~~~~   75 (231)
                      ++.|++..+|++++|++.+|  .+++|+|+||||||||+++|+|...+.. .+..|.+....... ..    ........
T Consensus        46 ~~~~~~~~il~~is~~i~~G--e~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~  123 (285)
T PRK14254         46 NVFYGDEQALDDVSMDIPEN--QVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIG  123 (285)
T ss_pred             EEEECCEeeEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEE
Confidence            56677788999999999999  9999999999999999999999965210 01233333221110 00    01134567


Q ss_pred             EEEeCCCCcCC
Q 038053           76 NVIDTPGLFDS   86 (231)
Q Consensus        76 ~l~Dtpg~~~~   86 (231)
                      ++++.|.+++.
T Consensus       124 ~v~q~~~l~~~  134 (285)
T PRK14254        124 MVFQKPNPFPK  134 (285)
T ss_pred             EEecCCccCcC
Confidence            88888877663

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.05  E-value=1.3e-10  Score=92.63  Aligned_cols=83  Identities=20%  Similarity=0.271  Sum_probs=55.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccc---c-----------c---------------cCCCCcceeeeeeeEEeeCCcEE
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFK---A-----------S---------------ADSSGVTKTCEMKTTVLKDGQVV   75 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~---~-----------~---------------~~~~~~t~~~~~~~~~~~~~~~~   75 (231)
                      +|+++|..|+|||||+..|+......   .           +               ....++|.+.......+ .+..+
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~-~~~~i   79 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFET-EKYRF   79 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEee-CCeEE
Confidence            48999999999999999985321100   0           0               11245555555555555 78889


Q ss_pred             EEEeCCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCC
Q 038053           76 NVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRS  119 (231)
Q Consensus        76 ~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~  119 (231)
                      .++||||..+           +...+......+|++++|+|+.+
T Consensus        80 ~liDtpG~~~-----------~~~~~~~~~~~~d~~i~VvDa~~  112 (219)
T cd01883          80 TILDAPGHRD-----------FVPNMITGASQADVAVLVVDARK  112 (219)
T ss_pred             EEEECCChHH-----------HHHHHHHHhhhCCEEEEEEECCC
Confidence            9999999643           11222233467899999999985

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.05  E-value=9.8e-11  Score=96.01  Aligned_cols=83  Identities=12%  Similarity=0.073  Sum_probs=56.8

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccc-cCCCCcceeeeeee-----E--EeeCCc
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKAS-ADSSGVTKTCEMKT-----T--VLKDGQ   73 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~-~~~~~~t~~~~~~~-----~--~~~~~~   73 (231)
                      +++|++++++++++|++.+|  .+++|+|+||||||||+++|+|...+..+ +..|.++.......     .  ......
T Consensus        23 ~~~~~~~~vl~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~  100 (265)
T PRK14252         23 NFYYGGYQALKNINMMVHEK--QVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMR  100 (265)
T ss_pred             EEEECCeeeeeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhcc
Confidence            56777788999999999999  99999999999999999999998753110 12233332211000     0  011334


Q ss_pred             EEEEEeCCCCcCC
Q 038053           74 VVNVIDTPGLFDS   86 (231)
Q Consensus        74 ~~~l~Dtpg~~~~   86 (231)
                      ..++++.|.+++.
T Consensus       101 i~~~~q~~~~~~~  113 (265)
T PRK14252        101 ISMVFQKPNPFPK  113 (265)
T ss_pred             EEEEccCCcCCcc
Confidence            6778888887763

>PLN03211 ABC transporter G-25; Provisional

Probab=99.05  E-value=1.7e-10  Score=105.50  Aligned_cols=87  Identities=20%  Similarity=0.169  Sum_probs=60.6

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCC
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTP   81 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtp   81 (231)
                      ++.|+++.+|+++++++.+|  ..++|+|+||||||||+|+|+|...+..  ..|.+........... .....++.|.+
T Consensus        75 ~~~~~~~~iL~~vs~~i~~G--e~~aI~GpnGaGKSTLL~iLaG~~~~~~--~sG~I~inG~~~~~~~-~~~i~yv~Q~~  149 (659)
T PLN03211         75 TRQIQERTILNGVTGMASPG--EILAVLGPSGSGKSTLLNALAGRIQGNN--FTGTILANNRKPTKQI-LKRTGFVTQDD  149 (659)
T ss_pred             cccCCCCeeeeCCEEEEECC--EEEEEECCCCCCHHHHHHHHhCCCCCCc--eeEEEEECCEECchhh-ccceEEECccc
Confidence            45788889999999999999  9999999999999999999999875310  1232332221111111 23467788888


Q ss_pred             CCcCCCCCchHH
Q 038053           82 GLFDSSAGSEFV   93 (231)
Q Consensus        82 g~~~~~~~~~~~   93 (231)
                      .+++..++.+.+
T Consensus       150 ~l~~~lTV~E~l  161 (659)
T PLN03211        150 ILYPHLTVRETL  161 (659)
T ss_pred             ccCCcCCHHHHH
Confidence            777665555443

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.04  E-value=1.4e-10  Score=94.82  Aligned_cols=46  Identities=15%  Similarity=0.103  Sum_probs=42.3

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF   49 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~   49 (231)
                      ++.|++..+|++++|++++|  .+++|+|+||+|||||+++|+|...+
T Consensus        14 ~~~~~~~~il~~is~~i~~G--e~~~I~G~nGsGKSTLl~~l~Gl~~~   59 (261)
T PRK14258         14 SFYYDTQKILEGVSMEIYQS--KVTAIIGPSGCGKSTFLKCLNRMNEL   59 (261)
T ss_pred             EEEeCCeeEeeceEEEEcCC--cEEEEECCCCCCHHHHHHHHhcccCC
Confidence            46677778999999999999  99999999999999999999999863

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.04  E-value=1.6e-10  Score=104.27  Aligned_cols=45  Identities=27%  Similarity=0.401  Sum_probs=42.1

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      ++.|+++.+|++++|++.+|  .+++|+|+||||||||+++|+|...
T Consensus       331 ~~~~~~~~~l~~isl~i~~G--e~~~l~G~NGsGKSTLl~~i~G~~~  375 (556)
T PRK11819        331 SKSFGDRLLIDDLSFSLPPG--GIVGIIGPNGAGKSTLFKMITGQEQ  375 (556)
T ss_pred             EEEECCeeeecceeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            56778888999999999999  9999999999999999999999987

>cd04117 Rab15 Rab15 subfamily

Probab=99.04  E-value=6.2e-09  Score=78.79  Aligned_cols=135  Identities=16%  Similarity=0.162  Sum_probs=75.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeee--eeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHH
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEM--KTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKR  100 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~  100 (231)
                      +|+++|++|+|||||++.+++....    ..+..|.....  ..... .+  ..+.+.||||....           ...
T Consensus         2 ki~vvG~~~~GKTsli~~~~~~~~~----~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~-----------~~~   65 (161)
T cd04117           2 RLLLIGDSGVGKTCLLCRFTDNEFH----SSHISTIGVDFKMKTIEV-DGIKVRIQIWDTAGQERY-----------QTI   65 (161)
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCC----CCCCCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHhH-----------Hhh
Confidence            6899999999999999888876541    12222222211  12222 22  35668999995431           111


Q ss_pred             HhhhcCCccEEEEEEECCCCCCHHHHH--------hc-CCCCcHHHHHHHHHh---------hHHHHHhhc-cchhhhhh
Q 038053          101 IGLAKGGIHAVLVVFSVRSRFSQEEEA--------AN-GGQPYTDEFLAELKR---------GATELRDQQ-AEVDSLKE  161 (231)
Q Consensus       101 ~~~~~~~~~~il~vvd~~~~~~~~~~~--------~~-~~~~~~~~~~~~~~~---------~~~~l~~~~-~~i~~is~  161 (231)
                      ....+..+|++++++|.++.-+-.+..        .. ...|++ .+.++.|.         +...+.... .+.+.+|+
T Consensus        66 ~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~ii-lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa  144 (161)
T cd04117          66 TKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKI-LIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSA  144 (161)
T ss_pred             HHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEE-EEEECcccccccCCCHHHHHHHHHHcCCEEEEEeC
Confidence            222346789999999998543322221        11 112222 12222221         111222222 26677899


Q ss_pred             hhHhhHHHHHHHHHH
Q 038053          162 YSKQEISKLMGQMQE  176 (231)
Q Consensus       162 ~~~~~i~~l~~~i~~  176 (231)
                      +++.|+++++..+.+
T Consensus       145 ~~~~~v~~~f~~l~~  159 (161)
T cd04117         145 CTNSNIKESFTRLTE  159 (161)
T ss_pred             CCCCCHHHHHHHHHh
Confidence            999999999887754

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.04  E-value=1.1e-10  Score=95.38  Aligned_cols=46  Identities=22%  Similarity=0.187  Sum_probs=42.6

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF   49 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~   49 (231)
                      ++.|+++.++++++|++.+|  .+++|+|+||||||||+++|+|...+
T Consensus        13 ~~~~~~~~il~~is~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p   58 (258)
T PRK11701         13 TKLYGPRKGCRDVSFDLYPG--EVLGIVGESGSGKTTLLNALSARLAP   58 (258)
T ss_pred             EEEcCCceeeeeeeEEEeCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            56777788999999999999  99999999999999999999999873

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.04  E-value=1.4e-10  Score=103.41  Aligned_cols=85  Identities=13%  Similarity=0.032  Sum_probs=57.6

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE----EeeCCcEEE
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT----VLKDGQVVN   76 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~   76 (231)
                      +++.|++..++++++|++.+|  .+++|+|+||||||||+++|+|...+.  +..|.+.........    ........+
T Consensus         7 l~~~~~~~~il~~isl~i~~G--e~~~liG~nGsGKSTLl~~i~G~~~~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~   82 (500)
T TIGR02633         7 IVKTFGGVKALDGIDLEVRPG--ECVGLCGENGAGKSTLMKILSGVYPHG--TWDGEIYWSGSPLKASNIRDTERAGIVI   82 (500)
T ss_pred             EEEEeCCeEeecceEEEEeCC--cEEEEECCCCCCHHHHHHHHhCCCCCC--CCCeEEEECCEECCCCCHHHHHhCCEEE
Confidence            356788888999999999999  999999999999999999999987631  022322222111000    000234677


Q ss_pred             EEeCCCCcCCCCC
Q 038053           77 VIDTPGLFDSSAG   89 (231)
Q Consensus        77 l~Dtpg~~~~~~~   89 (231)
                      +++.|.+++..+.
T Consensus        83 v~q~~~~~~~~tv   95 (500)
T TIGR02633        83 IHQELTLVPELSV   95 (500)
T ss_pred             EeeccccCCCCcH
Confidence            8888776654433

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.04  E-value=1.7e-10  Score=92.98  Aligned_cols=85  Identities=21%  Similarity=0.117  Sum_probs=58.6

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE-EeeCCcEEEEEeC
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT-VLKDGQVVNVIDT   80 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~l~Dt   80 (231)
                      ++.|++. +++++++++.+|  .+++|+|+||+|||||+++|+|...+    ..|.+......... ........++++.
T Consensus         7 ~~~~~~~-~l~~is~~i~~G--e~~~i~G~nG~GKStLl~~l~G~~~p----~~G~v~i~g~~~~~~~~~~~~i~~~~q~   79 (235)
T cd03299           7 SKDWKEF-KLKNVSLEVERG--DYFVILGPTGSGKSVLLETIAGFIKP----DSGKILLNGKDITNLPPEKRDISYVPQN   79 (235)
T ss_pred             EEEeCCc-eeeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCcCC----CceEEEECCEEcCcCChhHcCEEEEeec
Confidence            4566654 899999999999  99999999999999999999999773    34433332211000 0012356778888


Q ss_pred             CCCcCCCCCchHH
Q 038053           81 PGLFDSSAGSEFV   93 (231)
Q Consensus        81 pg~~~~~~~~~~~   93 (231)
                      +.+++..+..+++
T Consensus        80 ~~~~~~~t~~e~l   92 (235)
T cd03299          80 YALFPHMTVYKNI   92 (235)
T ss_pred             CccCCCccHHHHH
Confidence            8887655544433

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=99.04  E-value=2.2e-10  Score=91.24  Aligned_cols=45  Identities=20%  Similarity=0.231  Sum_probs=40.6

Q ss_pred             CCCC-CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053            3 SGMG-ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF   49 (231)
Q Consensus         3 ~~~~-~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~   49 (231)
                      ++|+ +..++++++|++++|  .+++|+|+||+|||||+++|+|...+
T Consensus         8 ~~~~~~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~   53 (218)
T cd03290           8 FSWGSGLATLSNINIRIPTG--QLTMIVGQVGCGKSSLLLAILGEMQT   53 (218)
T ss_pred             EecCCCCcceeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhccCCC
Confidence            4564 567999999999999  99999999999999999999999863

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.04  E-value=2.1e-10  Score=94.22  Aligned_cols=41  Identities=29%  Similarity=0.411  Sum_probs=38.4

Q ss_pred             CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053            7 ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF   49 (231)
Q Consensus         7 ~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~   49 (231)
                      ++.++++++|++.+|  .+++|+|+||+|||||+++|+|...+
T Consensus        24 ~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p   64 (268)
T PRK10419         24 HQTVLNNVSLSLKSG--ETVALLGRSGCGKSTLARLLVGLESP   64 (268)
T ss_pred             ceeeEeceeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            468999999999999  99999999999999999999999763

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=99.04  E-value=1.9e-10  Score=86.46  Aligned_cols=60  Identities=32%  Similarity=0.346  Sum_probs=35.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccc-----cCCCCcce-eeeeeeEEeeCCcEEEEEeCCCCcCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKAS-----ADSSGVTK-TCEMKTTVLKDGQVVNVIDTPGLFDSS   87 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~-----~~~~~~t~-~~~~~~~~~~~~~~~~l~Dtpg~~~~~   87 (231)
                      .+++|+|++|||||||+|.|++......+     ...|..|+ ......    -....+++||||+.+..
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~----l~~g~~iIDTPGf~~~~  101 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFP----LPDGGYIIDTPGFRSFG  101 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEE----ETTSEEEECSHHHHT--
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEe----cCCCcEEEECCCCCccc
Confidence            79999999999999999999998543322     12232232 222221    23457899999997643

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.04  E-value=9.7e-11  Score=96.75  Aligned_cols=74  Identities=19%  Similarity=0.156  Sum_probs=51.9

Q ss_pred             CCCCCC---cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE---EeeCCcEE
Q 038053            2 SSGMGE---RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT---VLKDGQVV   75 (231)
Q Consensus         2 ~~~~~~---~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~   75 (231)
                      ++.|++   ..+|+++++++.+|  .+++|+|+||||||||+++|+|...+    ..|.+..+......   ........
T Consensus        11 ~~~~~~~~~~~~l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p----~~G~i~~~g~~i~~~~~~~~~~~i~   84 (279)
T PRK13650         11 TFKYKEDQEKYTLNDVSFHVKQG--EWLSIIGHNGSGKSTTVRLIDGLLEA----ESGQIIIDGDLLTEENVWDIRHKIG   84 (279)
T ss_pred             EEEcCCCCcCeeeeeeEEEEeCC--CEEEEECCCCCCHHHHHHHHhcCCCC----CCcEEEECCEECCcCcHHHHHhhce
Confidence            456653   45999999999999  99999999999999999999999873    44444333221100   00023456


Q ss_pred             EEEeCC
Q 038053           76 NVIDTP   81 (231)
Q Consensus        76 ~l~Dtp   81 (231)
                      ++++.|
T Consensus        85 ~v~q~~   90 (279)
T PRK13650         85 MVFQNP   90 (279)
T ss_pred             EEEcCh
Confidence            777776

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.04  E-value=2.5e-09  Score=85.47  Aligned_cols=96  Identities=9%  Similarity=0.070  Sum_probs=57.8

Q ss_pred             CCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhh
Q 038053           71 DGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRG  145 (231)
Q Consensus        71 ~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~  145 (231)
                      .+..+.++||||...       ....+...+.  ...+|.+++|+|+..++...+..     ...+.|++ .+++++|..
T Consensus        82 ~~~~i~liDtpG~~~-------~~~~~~~~~~--~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~i-vvvNK~D~~  151 (224)
T cd04165          82 SSKLVTFIDLAGHER-------YLKTTLFGLT--GYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVF-VVVTKIDLA  151 (224)
T ss_pred             CCcEEEEEECCCcHH-------HHHHHHHhhc--ccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEE-EEEECcccc
Confidence            467889999999643       1122222111  13689999999998788777655     23334443 233333310


Q ss_pred             --------HHHHHhhc------------------------------cchhhhhhhhHhhHHHHHHHHHH
Q 038053          146 --------ATELRDQQ------------------------------AEVDSLKEYSKQEISKLMGQMQE  176 (231)
Q Consensus       146 --------~~~l~~~~------------------------------~~i~~is~~~~~~i~~l~~~i~~  176 (231)
                              ...+.+.+                              .|++.+|+.+|.|++.|...+..
T Consensus       152 ~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~  220 (224)
T cd04165         152 PANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL  220 (224)
T ss_pred             CHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence                    02222222                              17777899999999998877643

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.03  E-value=2e-10  Score=103.01  Aligned_cols=45  Identities=13%  Similarity=0.302  Sum_probs=42.2

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      ++.|+++.+|++++|++.+|  .+++|+|+||||||||+++|+|...
T Consensus       326 ~~~~~~~~~l~~is~~i~~G--e~~~l~G~NGsGKSTLl~~i~G~~~  370 (530)
T PRK15064        326 TKGFDNGPLFKNLNLLLEAG--ERLAIIGENGVGKTTLLRTLVGELE  370 (530)
T ss_pred             EEeeCCceeecCcEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            56788888999999999999  9999999999999999999999976

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.03  E-value=1.3e-09  Score=86.81  Aligned_cols=140  Identities=12%  Similarity=0.063  Sum_probs=78.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee--eEEe-eCCcEEEEEeCCCCcCCCCCchHHHHHHHH
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK--TTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVK   99 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~--~~~~-~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~   99 (231)
                      ..+|+++|.+|+|||||++.++.....    .....|......  .... .....+.+.||||.....        .+  
T Consensus        13 ~~Ki~vvG~~gvGKTsli~~~~~~~f~----~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~--   78 (219)
T PLN03071         13 SFKLVIVGDGGTGKTTFVKRHLTGEFE----KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG--------GL--   78 (219)
T ss_pred             ceEEEEECcCCCCHHHHHHHHhhCCCC----CccCCccceeEEEEEEEECCeEEEEEEEECCCchhhh--------hh--
Confidence            379999999999999999987654321    111122211111  1111 123577899999965411        11  


Q ss_pred             HHhhhcCCccEEEEEEECCCCCCHHHHH--------hcCCCCcHHHHHHHHHhhH-----HHH--Hhhc-cchhhhhhhh
Q 038053          100 RIGLAKGGIHAVLVVFSVRSRFSQEEEA--------ANGGQPYTDEFLAELKRGA-----TEL--RDQQ-AEVDSLKEYS  163 (231)
Q Consensus       100 ~~~~~~~~~~~il~vvd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~-----~~l--~~~~-~~i~~is~~~  163 (231)
                       ....+..+|++++|+|+++..+.....        .....|++ .+.++.|...     ..+  .... -+.+.+||++
T Consensus        79 -~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~pii-lvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~  156 (219)
T PLN03071         79 -RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV-LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKS  156 (219)
T ss_pred             -hHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEE-EEEEchhhhhccCCHHHHHHHHhcCCEEEEcCCCC
Confidence             122346789999999998654333221        11223333 2233333110     111  1111 1456789999


Q ss_pred             HhhHHHHHHHHHHHH
Q 038053          164 KQEISKLMGQMQESY  178 (231)
Q Consensus       164 ~~~i~~l~~~i~~~~  178 (231)
                      |.|+.+++..+....
T Consensus       157 ~~~i~~~f~~l~~~~  171 (219)
T PLN03071        157 NYNFEKPFLYLARKL  171 (219)
T ss_pred             CCCHHHHHHHHHHHH
Confidence            999999988887654

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.03  E-value=1.8e-10  Score=94.30  Aligned_cols=82  Identities=17%  Similarity=0.086  Sum_probs=56.9

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccc-cCCCCcceeeeeee---E--EeeCCcEE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKAS-ADSSGVTKTCEMKT---T--VLKDGQVV   75 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~-~~~~~~t~~~~~~~---~--~~~~~~~~   75 (231)
                      ++.|++..++++++|++++|  .+++|+|+||+|||||+++|+|...+..+ +..|.++.......   .  ........
T Consensus        15 ~~~~~~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~   92 (261)
T PRK14263         15 KIFYGNFMAVRDSHVPIRKN--EITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIG   92 (261)
T ss_pred             EEEeCCEEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceE
Confidence            45678889999999999999  99999999999999999999999763110 12333333221110   0  01134467


Q ss_pred             EEEeCCCCcC
Q 038053           76 NVIDTPGLFD   85 (231)
Q Consensus        76 ~l~Dtpg~~~   85 (231)
                      ++++.|.++.
T Consensus        93 ~v~q~~~~~~  102 (261)
T PRK14263         93 MVFQQPNPFS  102 (261)
T ss_pred             EEecCCcccc
Confidence            8888887764

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.03  E-value=2.2e-10  Score=104.86  Aligned_cols=47  Identities=17%  Similarity=0.322  Sum_probs=43.1

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF   49 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~   49 (231)
                      +++.|+++.+|++++|++.+|  .+++|+|+||||||||+++|+|...+
T Consensus       325 l~~~~~~~~il~~vsl~i~~G--e~~~l~G~NGsGKSTLlk~l~G~~~p  371 (635)
T PRK11147        325 VNYQIDGKQLVKDFSAQVQRG--DKIALIGPNGCGKTTLLKLMLGQLQA  371 (635)
T ss_pred             eEEEECCeEEEcCcEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence            356788888999999999999  99999999999999999999999763

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.03  E-value=2.7e-10  Score=90.48  Aligned_cols=83  Identities=14%  Similarity=0.121  Sum_probs=57.2

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-------EEeeCCc
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-------TVLKDGQ   73 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-------~~~~~~~   73 (231)
                      ++++|++..+  +++|++.+   .+++|+|+||+|||||+++|+|...+    ..|.+........       .......
T Consensus         6 l~~~~~~~~~--~vsl~i~~---e~~~i~G~nGsGKSTLl~~l~G~~~~----~~G~i~~~g~~~~~~~~~~~~~~~~~~   76 (214)
T cd03297           6 IEKRLPDFTL--KIDFDLNE---EVTGIFGASGAGKSTLLRCIAGLEKP----DGGTIVLNGTVLFDSRKKINLPPQQRK   76 (214)
T ss_pred             eeEecCCeee--CceEEEcc---eeEEEECCCCCCHHHHHHHHhCCCCC----CCceEEECCEecccccchhhhhhHhhc
Confidence            4789998876  99999987   59999999999999999999999873    3333332221100       0001235


Q ss_pred             EEEEEeCCCCcCCCCCchH
Q 038053           74 VVNVIDTPGLFDSSAGSEF   92 (231)
Q Consensus        74 ~~~l~Dtpg~~~~~~~~~~   92 (231)
                      ..++++.+.+++..+..++
T Consensus        77 i~~~~q~~~~~~~~t~~~~   95 (214)
T cd03297          77 IGLVFQQYALFPHLNVREN   95 (214)
T ss_pred             EEEEecCCccCCCCCHHHH
Confidence            6788999888765554433

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.03  E-value=8.6e-11  Score=97.39  Aligned_cols=82  Identities=20%  Similarity=0.140  Sum_probs=55.0

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc-ccccCCCCcceeeeeee-E----EeeCCcEE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF-KASADSSGVTKTCEMKT-T----VLKDGQVV   75 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~-~~~~~~~~~t~~~~~~~-~----~~~~~~~~   75 (231)
                      +++|++..++++++|++.+|  .+++|+|+||||||||+++|+|.... ...+..|.++....... .    ........
T Consensus        46 ~~~~~~~~il~~vsl~i~~G--e~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~  123 (286)
T PRK14275         46 SIYYGEFEAVKKVNADILSK--YVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIG  123 (286)
T ss_pred             EEEECCEEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEE
Confidence            45677778999999999999  99999999999999999999997420 00012232322221100 0    00134567


Q ss_pred             EEEeCCCCcC
Q 038053           76 NVIDTPGLFD   85 (231)
Q Consensus        76 ~l~Dtpg~~~   85 (231)
                      ++++.|.+++
T Consensus       124 ~v~q~~~l~~  133 (286)
T PRK14275        124 MVFQKPNPFP  133 (286)
T ss_pred             EECCCCCCCc
Confidence            8888888775

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.03  E-value=1.9e-10  Score=91.64  Aligned_cols=78  Identities=19%  Similarity=0.077  Sum_probs=54.1

Q ss_pred             CCCCCC--cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE---EeeCCcEEE
Q 038053            2 SSGMGE--RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT---VLKDGQVVN   76 (231)
Q Consensus         2 ~~~~~~--~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~   76 (231)
                      +++|++  +.++++++|++++|  .+++|+|+||+|||||+++|+|...+    ..|.++........   ........+
T Consensus         9 ~~~~~~~~~~~l~~i~~~i~~G--~~~~i~G~nGsGKSTLl~~i~G~~~~----~~G~i~~~g~~~~~~~~~~~~~~i~~   82 (220)
T cd03245           9 SFSYPNQEIPALDNVSLTIRAG--EKVAIIGRVGSGKSTLLKLLAGLYKP----TSGSVLLDGTDIRQLDPADLRRNIGY   82 (220)
T ss_pred             EEEcCCCCcccccceEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCcCC----CCCeEEECCEEhHHCCHHHHHhhEEE
Confidence            456754  56999999999999  99999999999999999999999863    33433332211000   000234567


Q ss_pred             EEeCCCCcC
Q 038053           77 VIDTPGLFD   85 (231)
Q Consensus        77 l~Dtpg~~~   85 (231)
                      +++.|.+++
T Consensus        83 ~~q~~~~~~   91 (220)
T cd03245          83 VPQDVTLFY   91 (220)
T ss_pred             eCCCCcccc
Confidence            777776654

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.03  E-value=1.3e-10  Score=96.37  Aligned_cols=74  Identities=19%  Similarity=0.102  Sum_probs=52.6

Q ss_pred             CCCCCC-----cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE-------Ee
Q 038053            2 SSGMGE-----RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT-------VL   69 (231)
Q Consensus         2 ~~~~~~-----~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~-------~~   69 (231)
                      ++.|+.     ..+|+++++++.+|  .+++|+|+||||||||+++|+|...    +..|.+..+......       ..
T Consensus         9 ~~~y~~~~~~~~~~l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~L~Gl~~----p~~G~i~~~g~~i~~~~~~~~~~~   82 (286)
T PRK13646          9 SYTYQKGTPYEHQAIHDVNTEFEQG--KYYAIVGQTGSGKSTLIQNINALLK----PTTGTVTVDDITITHKTKDKYIRP   82 (286)
T ss_pred             EEEECCCCccccCceeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCC----CCCcEEEECCEECccccccchHHH
Confidence            455643     46999999999999  9999999999999999999999987    344444433221100       00


Q ss_pred             eCCcEEEEEeCC
Q 038053           70 KDGQVVNVIDTP   81 (231)
Q Consensus        70 ~~~~~~~l~Dtp   81 (231)
                      .....+++++.|
T Consensus        83 ~~~~ig~v~q~~   94 (286)
T PRK13646         83 VRKRIGMVFQFP   94 (286)
T ss_pred             HHhheEEEecCh
Confidence            123567788876

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.02  E-value=1.4e-10  Score=94.36  Aligned_cols=83  Identities=17%  Similarity=0.103  Sum_probs=56.6

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcccc-ccCCCCcceeeeee-eEE----eeCCcEE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKA-SADSSGVTKTCEMK-TTV----LKDGQVV   75 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~-~~~~~~~t~~~~~~-~~~----~~~~~~~   75 (231)
                      ++.|++.+++++++|++.+|  ..++|+|+||||||||+++|+|...+.. .+..|.++...... ...    .......
T Consensus        12 ~~~~~~~~~l~~is~~i~~G--e~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~   89 (251)
T PRK14244         12 NLWYGSKQILFDINLDIYKR--EVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVG   89 (251)
T ss_pred             EEEECCeeeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEE
Confidence            45677788999999999999  9999999999999999999999864210 01233333222110 000    0134567


Q ss_pred             EEEeCCCCcCC
Q 038053           76 NVIDTPGLFDS   86 (231)
Q Consensus        76 ~l~Dtpg~~~~   86 (231)
                      ++++.|.+++.
T Consensus        90 ~v~q~~~~~~~  100 (251)
T PRK14244         90 MVFQKPNPFPK  100 (251)
T ss_pred             EEecCcccccC
Confidence            88888887763

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=99.02  E-value=6.9e-10  Score=83.67  Aligned_cols=55  Identities=27%  Similarity=0.427  Sum_probs=42.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGL   83 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~   83 (231)
                      .+++++|.||+|||||+|.|++......+ ..+++|+......    .+..++++||||+
T Consensus       101 ~~~~~~G~~~~GKstlin~l~~~~~~~~~-~~~~~t~~~~~~~----~~~~~~liDtPG~  155 (155)
T cd01849         101 ITVGVIGYPNVGKSSVINALLNKLKLKVG-NVPGTTTSQQEVK----LDNKIKLLDTPGI  155 (155)
T ss_pred             cEEEEEccCCCCHHHHHHHHHcccccccc-CCCCcccceEEEE----ecCCEEEEECCCC
Confidence            79999999999999999999998754442 4456666554432    2356889999996

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.02  E-value=1.4e-10  Score=96.13  Aligned_cols=74  Identities=19%  Similarity=0.043  Sum_probs=53.2

Q ss_pred             CCCCCC-----cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE-------Ee
Q 038053            2 SSGMGE-----RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT-------VL   69 (231)
Q Consensus         2 ~~~~~~-----~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~-------~~   69 (231)
                      ++.|++     +.+++++++++.+|  .+++|+|+||+|||||+++|+|...+    ..|.++.+......       ..
T Consensus         9 ~~~~~~~~~~~~~~l~~vsl~i~~G--e~~~iiG~NGaGKSTLl~~l~Gl~~p----~~G~i~~~g~~~~~~~~~~~~~~   82 (287)
T PRK13641          9 DYIYSPGTPMEKKGLDNISFELEEG--SFVALVGHTGSGKSTLMQHFNALLKP----SSGTITIAGYHITPETGNKNLKK   82 (287)
T ss_pred             EEEcCCCCCccccceeeeEEEEeCC--CEEEEECCCCCCHHHHHHHHhcCCCC----CCcEEEECCEECccccccchHHH
Confidence            566763     46999999999999  99999999999999999999999873    44444433321100       00


Q ss_pred             eCCcEEEEEeCC
Q 038053           70 KDGQVVNVIDTP   81 (231)
Q Consensus        70 ~~~~~~~l~Dtp   81 (231)
                      .....+++++.|
T Consensus        83 ~~~~ig~v~q~~   94 (287)
T PRK13641         83 LRKKVSLVFQFP   94 (287)
T ss_pred             HHhceEEEEeCh
Confidence            123467788877

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.02  E-value=1.4e-10  Score=95.92  Aligned_cols=46  Identities=22%  Similarity=0.169  Sum_probs=41.0

Q ss_pred             CCCCCC--cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053            2 SSGMGE--RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF   49 (231)
Q Consensus         2 ~~~~~~--~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~   49 (231)
                      ++.|++  ++++++++|++++|  .+++|+|+||||||||+++|+|...+
T Consensus        12 ~~~~~~~~~~~l~~v~l~i~~G--e~~~I~G~nGaGKSTLl~~l~G~~~p   59 (282)
T PRK13640         12 SFTYPDSKKPALNDISFSIPRG--SWTALIGHNGSGKSTISKLINGLLLP   59 (282)
T ss_pred             EEEcCCCCccceeeEEEEEcCC--CEEEEECCCCCcHHHHHHHHhcccCC
Confidence            456753  46999999999999  99999999999999999999999863

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.02  E-value=1.7e-10  Score=92.77  Aligned_cols=46  Identities=24%  Similarity=0.174  Sum_probs=41.4

Q ss_pred             CCCCCCc--ccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053            2 SSGMGER--VIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF   49 (231)
Q Consensus         2 ~~~~~~~--~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~   49 (231)
                      ++.|++.  .++++++|++++|  .+++|+|+||||||||+++|+|...+
T Consensus         7 ~~~~~~~~~~~l~~i~~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p   54 (234)
T cd03251           7 TFRYPGDGPPVLRDISLDIPAG--ETVALVGPSGSGKSTLVNLIPRFYDV   54 (234)
T ss_pred             EEEeCCCCccceeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhccccC
Confidence            4567654  7999999999999  99999999999999999999999873

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=99.01  E-value=1.6e-09  Score=89.82  Aligned_cols=60  Identities=28%  Similarity=0.424  Sum_probs=46.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSA   88 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~   88 (231)
                      .+++++|.||+|||||+|+|+|.....++ ..+++|+..+...    .+..++++||||+.....
T Consensus       122 ~~~~~~G~pnvGKSsliN~l~~~~~~~~~-~~~g~T~~~~~~~----~~~~~~l~DtPGi~~~~~  181 (287)
T PRK09563        122 IRAMIIGIPNVGKSTLINRLAGKKIAKTG-NRPGVTKAQQWIK----LGKGLELLDTPGILWPKL  181 (287)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCccccC-CCCCeEEEEEEEE----eCCcEEEEECCCcCCCCC
Confidence            78999999999999999999998765553 5677777654322    244688999999976543

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.01  E-value=1.1e-09  Score=98.98  Aligned_cols=142  Identities=15%  Similarity=0.226  Sum_probs=86.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccc-------c------CCCCcceeeeeeeEEee----CCcEEEEEeCCCCcCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKAS-------A------DSSGVTKTCEMKTTVLK----DGQVVNVIDTPGLFDS   86 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~-------~------~~~~~t~~~~~~~~~~~----~~~~~~l~Dtpg~~~~   86 (231)
                      .+|+|+|..|+|||||++.|+........       .      ...++|.........+.    ....+.++||||..+.
T Consensus         4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF   83 (595)
T TIGR01393         4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF   83 (595)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence            68999999999999999999865321110       0      11245544433333331    1256789999998652


Q ss_pred             CCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhhH-------HHHHhhcc
Q 038053           87 SAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRGA-------TELRDQQA  154 (231)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-------~~l~~~~~  154 (231)
                             ...    ....+..+|++++|+|++++.+.....     .....+++ .++|++|...       .++.+.++
T Consensus        84 -------~~~----v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiI-iViNKiDl~~~~~~~~~~el~~~lg  151 (595)
T TIGR01393        84 -------SYE----VSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEII-PVINKIDLPSADPERVKKEIEEVIG  151 (595)
T ss_pred             -------HHH----HHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEE-EEEECcCCCccCHHHHHHHHHHHhC
Confidence                   112    223345679999999998776655433     22233433 3445544210       23333332


Q ss_pred             ----chhhhhhhhHhhHHHHHHHHHHH
Q 038053          155 ----EVDSLKEYSKQEISKLMGQMQES  177 (231)
Q Consensus       155 ----~i~~is~~~~~~i~~l~~~i~~~  177 (231)
                          .++++||++|.|++++++.+...
T Consensus       152 ~~~~~vi~vSAktG~GI~~Lle~I~~~  178 (595)
T TIGR01393       152 LDASEAILASAKTGIGIEEILEAIVKR  178 (595)
T ss_pred             CCcceEEEeeccCCCCHHHHHHHHHHh
Confidence                36789999999999998887654

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.01  E-value=4.6e-10  Score=90.12  Aligned_cols=74  Identities=23%  Similarity=0.115  Sum_probs=51.5

Q ss_pred             CCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCc
Q 038053           11 DGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGS   90 (231)
Q Consensus        11 ~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~   90 (231)
                      +++++|++.+|  .+++|+|+||||||||+++|+|...+    ..|.+........ .. .....++++.|++++..+..
T Consensus         1 l~~is~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p----~~G~i~~~g~~~~-~~-~~~~~~v~q~~~l~~~~tv~   72 (230)
T TIGR01184         1 LKGVNLTIQQG--EFISLIGHSGCGKSTLLNLISGLAQP----TSGGVILEGKQIT-EP-GPDRMVVFQNYSLLPWLTVR   72 (230)
T ss_pred             CCceeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CCceEEECCEECC-CC-ChhheEEecCcccCCCCCHH
Confidence            57899999999  99999999999999999999999873    3443333221100 00 11236788888887755544


Q ss_pred             hH
Q 038053           91 EF   92 (231)
Q Consensus        91 ~~   92 (231)
                      ++
T Consensus        73 e~   74 (230)
T TIGR01184        73 EN   74 (230)
T ss_pred             HH
Confidence            43

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.01  E-value=2.7e-10  Score=102.64  Aligned_cols=45  Identities=27%  Similarity=0.411  Sum_probs=42.0

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      ++.|+++.+|++++|++.+|  .+++|+|+||||||||+++|+|...
T Consensus       329 ~~~~~~~~~l~~isl~i~~G--e~~~l~G~NGsGKSTLl~~l~G~~~  373 (552)
T TIGR03719       329 SKGFGDKLLIDDLSFKLPPG--GIVGVIGPNGAGKSTLFRMITGQEQ  373 (552)
T ss_pred             EEEECCeeeeccceEEEcCC--CEEEEECCCCCCHHHHHHHHcCCCC
Confidence            45677788999999999999  9999999999999999999999976

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.01  E-value=2.3e-10  Score=94.61  Aligned_cols=69  Identities=17%  Similarity=0.158  Sum_probs=49.9

Q ss_pred             cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE----EeeCCcEEEEEeCCC
Q 038053            8 RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT----VLKDGQVVNVIDTPG   82 (231)
Q Consensus         8 ~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~l~Dtpg   82 (231)
                      +.+|++++|++.+|  .+++|+|+||+|||||+++|+|...    +..|.++.+......    ........++++.|.
T Consensus        23 ~~vl~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~----~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~   95 (280)
T PRK13633         23 KLALDDVNLEVKKG--EFLVILGRNGSGKSTIAKHMNALLI----PSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPD   95 (280)
T ss_pred             cceeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCC----CCCceEEECCEeccccccHHHHhhheEEEecChh
Confidence            56999999999999  9999999999999999999999987    344444433221100    001234567777764

>TIGR00092 GTP-binding protein YchF

Probab=99.01  E-value=2.1e-09  Score=90.92  Aligned_cols=90  Identities=17%  Similarity=0.132  Sum_probs=66.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeC----------------CcEEEEEeCCCCcCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKD----------------GQVVNVIDTPGLFDSS   87 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~l~Dtpg~~~~~   87 (231)
                      ..+||||.||+|||||+|+|++...... ...+.+|..+..+......                ...+.++|.||+..+.
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~-a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gA   81 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEA-ANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGA   81 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCcccc-CCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccch
Confidence            6799999999999999999999976122 2456666666665554422                1357789999999877


Q ss_pred             CCchHHHHHHHHHHhhhcCCccEEEEEEECC
Q 038053           88 AGSEFVGKEIVKRIGLAKGGIHAVLVVFSVR  118 (231)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~  118 (231)
                      +....++..++..+.    .+|++++|++..
T Consensus        82 s~g~Glgn~fL~~ir----~~d~l~hVvr~f  108 (368)
T TIGR00092        82 SKGEGLGNQFLANIR----EVDIIQHVVRCF  108 (368)
T ss_pred             hcccCcchHHHHHHH----hCCEEEEEEeCC
Confidence            666667777776654    559999999985

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.00  E-value=2.5e-10  Score=95.94  Aligned_cols=40  Identities=23%  Similarity=0.218  Sum_probs=37.6

Q ss_pred             cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053            8 RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF   49 (231)
Q Consensus         8 ~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~   49 (231)
                      ..+|+++++++++|  .+++|+|+||||||||+++|+|...+
T Consensus        39 ~~~L~~vsl~i~~G--e~~~I~G~nGsGKSTLl~~L~Gl~~p   78 (320)
T PRK13631         39 LVALNNISYTFEKN--KIYFIIGNSGSGKSTLVTHFNGLIKS   78 (320)
T ss_pred             ccceeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            36999999999999  99999999999999999999999873

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.00  E-value=4.1e-10  Score=91.79  Aligned_cols=78  Identities=18%  Similarity=0.226  Sum_probs=52.6

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEEeeCCcEEEEEeC
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTVLKDGQVVNVIDT   80 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~Dt   80 (231)
                      ++.| +.+++++++|++.+|  .+++|+|+||||||||+++|+|...+...+..|.+....... ..........++++.
T Consensus        11 ~~~~-~~~il~~vsl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~   87 (254)
T PRK10418         11 ALQA-AQPLVHGVSLTLQRG--RVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQN   87 (254)
T ss_pred             EEEe-ccceecceEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecC
Confidence            4556 567999999999999  999999999999999999999998641101333333221110 011112346778887


Q ss_pred             CC
Q 038053           81 PG   82 (231)
Q Consensus        81 pg   82 (231)
                      |.
T Consensus        88 ~~   89 (254)
T PRK10418         88 PR   89 (254)
T ss_pred             Cc
Confidence            75

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.00  E-value=2.1e-10  Score=93.19  Aligned_cols=82  Identities=16%  Similarity=0.099  Sum_probs=56.0

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc-ccccCCCCcceeeeeeeE-----EeeCCcEE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF-KASADSSGVTKTCEMKTT-----VLKDGQVV   75 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~-~~~~~~~~~t~~~~~~~~-----~~~~~~~~   75 (231)
                      ++.|+++.+++++++++.+|  .+++|+|+||+|||||+++|+|.... ...+..|.+.........     ........
T Consensus        10 ~~~~~~~~~l~~~s~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~   87 (250)
T PRK14266         10 NTYFDDAHILKNVNLDIPKN--SVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVG   87 (250)
T ss_pred             EEEeCCeEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheE
Confidence            45677788999999999999  99999999999999999999997431 000123333322211000     00134578


Q ss_pred             EEEeCCCCcC
Q 038053           76 NVIDTPGLFD   85 (231)
Q Consensus        76 ~l~Dtpg~~~   85 (231)
                      ++++.|.+++
T Consensus        88 ~~~q~~~~~~   97 (250)
T PRK14266         88 MVFQKPNPFP   97 (250)
T ss_pred             EEecCCccCc
Confidence            8888888776

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.00  E-value=7.6e-11  Score=97.02  Aligned_cols=76  Identities=18%  Similarity=0.152  Sum_probs=53.9

Q ss_pred             CCCC--CCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-e---EEeeCCcEE
Q 038053            2 SSGM--GERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-T---TVLKDGQVV   75 (231)
Q Consensus         2 ~~~~--~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~---~~~~~~~~~   75 (231)
                      +++|  +...+|++++|.+.+|  .+++|+|+||+|||||+++|+|... .    .|.+..+.... .   ... .....
T Consensus         9 s~~~~~~~~~~l~~isl~I~~G--e~~~IvG~nGsGKSTLl~~L~gl~~-~----~G~I~i~g~~i~~~~~~~l-r~~i~   80 (275)
T cd03289           9 TAKYTEGGNAVLENISFSISPG--QRVGLLGRTGSGKSTLLSAFLRLLN-T----EGDIQIDGVSWNSVPLQKW-RKAFG   80 (275)
T ss_pred             EEEeCCCCCcceeceEEEEcCC--CEEEEECCCCCCHHHHHHHHhhhcC-C----CcEEEECCEEhhhCCHHHH-hhhEE
Confidence            4566  4567999999999999  9999999999999999999999975 2    22222222110 0   011 23567


Q ss_pred             EEEeCCCCcC
Q 038053           76 NVIDTPGLFD   85 (231)
Q Consensus        76 ~l~Dtpg~~~   85 (231)
                      ++++.|.+++
T Consensus        81 ~v~q~~~lf~   90 (275)
T cd03289          81 VIPQKVFIFS   90 (275)
T ss_pred             EECCCcccch
Confidence            7788887764

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.00  E-value=1.7e-10  Score=105.54  Aligned_cols=47  Identities=21%  Similarity=0.254  Sum_probs=43.6

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF   49 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~   49 (231)
                      +++.|++..+|++++|.+++|  .+++|+|+||||||||+++|+|...+
T Consensus         9 ls~~~~~~~il~~is~~i~~G--e~v~LvG~NGsGKSTLLriiaG~~~p   55 (635)
T PRK11147          9 AWLSFSDAPLLDNAELHIEDN--ERVCLVGRNGAGKSTLMKILNGEVLL   55 (635)
T ss_pred             EEEEeCCceeEeCcEEEECCC--CEEEEECCCCCCHHHHHHHHcCCCCC
Confidence            367888889999999999999  99999999999999999999999774

>cd04128 Spg1 Spg1p

Probab=99.00  E-value=8.5e-09  Score=79.82  Aligned_cols=136  Identities=13%  Similarity=0.093  Sum_probs=78.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeee--eeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHH
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEM--KTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKR  100 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~--~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~  100 (231)
                      +|+++|.+|+|||||++.+++..-.    .....|.....  ..... .+  ..+.+.||+|...           +...
T Consensus         2 Ki~vlG~~~vGKTsLi~~~~~~~f~----~~~~~T~g~~~~~~~i~~-~~~~~~l~iwDt~G~~~-----------~~~~   65 (182)
T cd04128           2 KIGLLGDAQIGKTSLMVKYVEGEFD----EDYIQTLGVNFMEKTISI-RGTEITFSIWDLGGQRE-----------FINM   65 (182)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCC----CCCCCccceEEEEEEEEE-CCEEEEEEEEeCCCchh-----------HHHh
Confidence            6899999999999999998876431    11112221111  12222 33  4577899998643           1112


Q ss_pred             HhhhcCCccEEEEEEECCCCCCHHHHH--------h-cCCCCcHHHHHHHHHhh--------------HHHHHhhcc-ch
Q 038053          101 IGLAKGGIHAVLVVFSVRSRFSQEEEA--------A-NGGQPYTDEFLAELKRG--------------ATELRDQQA-EV  156 (231)
Q Consensus       101 ~~~~~~~~~~il~vvd~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~--------------~~~l~~~~~-~i  156 (231)
                      ....+..+|++++|+|+++.-+..+..        . ....|+  .+.++.|..              ...+....+ ++
T Consensus        66 ~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~pi--lVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~  143 (182)
T cd04128          66 LPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIPI--LVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPL  143 (182)
T ss_pred             hHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEE--EEEEchhccccccchhhhhhHHHHHHHHHHcCCEE
Confidence            223457889999999998553433311        1 111222  223443310              012222222 56


Q ss_pred             hhhhhhhHhhHHHHHHHHHHHH
Q 038053          157 DSLKEYSKQEISKLMGQMQESY  178 (231)
Q Consensus       157 ~~is~~~~~~i~~l~~~i~~~~  178 (231)
                      +.+||++|.|+++++..+....
T Consensus       144 ~e~SAk~g~~v~~lf~~l~~~l  165 (182)
T cd04128         144 IFCSTSHSINVQKIFKIVLAKA  165 (182)
T ss_pred             EEEeCCCCCCHHHHHHHHHHHH
Confidence            7799999999999998876643

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.00  E-value=4.1e-09  Score=81.01  Aligned_cols=136  Identities=18%  Similarity=0.138  Sum_probs=77.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKR  100 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~  100 (231)
                      .+|+++|.+|+|||||++.+....-    +.....|...... .... .+  ..+.+.||+|.....        .+   
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f----~~~~~pt~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~--------~~---   65 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKF----PSEYVPTVFDNYAVTVMI-GGEPYTLGLFDTAGQEDYD--------RL---   65 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCC----CCCCCCceeeeeEEEEEE-CCEEEEEEEEECCCccchh--------hh---
Confidence            5799999999999999999987543    1112222221111 1222 33  456689999975421        11   


Q ss_pred             HhhhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhhH---------------------HHHH
Q 038053          101 IGLAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRGA---------------------TELR  150 (231)
Q Consensus       101 ~~~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~---------------------~~l~  150 (231)
                      ....+..+|++++|+|.++.-+-....         .....|++ .+.++.|...                     ..+.
T Consensus        66 ~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~pii-lvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a  144 (175)
T cd01874          66 RPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFL-LVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLA  144 (175)
T ss_pred             hhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE-EEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHH
Confidence            122446789999999998543332211         11223333 2333332100                     1122


Q ss_pred             hhcc--chhhhhhhhHhhHHHHHHHHHH
Q 038053          151 DQQA--EVDSLKEYSKQEISKLMGQMQE  176 (231)
Q Consensus       151 ~~~~--~i~~is~~~~~~i~~l~~~i~~  176 (231)
                      ...+  .++.+||++|.|+.+++..+..
T Consensus       145 ~~~~~~~~~e~SA~tg~~v~~~f~~~~~  172 (175)
T cd01874         145 RDLKAVKYVECSALTQKGLKNVFDEAIL  172 (175)
T ss_pred             HHhCCcEEEEecCCCCCCHHHHHHHHHH
Confidence            2222  5677999999999998877654

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.00  E-value=5.2e-10  Score=91.61  Aligned_cols=41  Identities=24%  Similarity=0.228  Sum_probs=38.5

Q ss_pred             CCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053            6 GERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus         6 ~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      +..+++++++|++.+|  .+++|+|+||+|||||+++|+|...
T Consensus        35 ~~~~il~~is~~i~~G--e~~~liG~NGsGKSTLlk~L~Gl~~   75 (264)
T PRK13546         35 KTFFALDDISLKAYEG--DVIGLVGINGSGKSTLSNIIGGSLS   75 (264)
T ss_pred             CceEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCcC
Confidence            4567899999999999  9999999999999999999999987

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.00  E-value=1.9e-10  Score=94.90  Aligned_cols=46  Identities=15%  Similarity=0.142  Sum_probs=41.5

Q ss_pred             CCCCC-CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053            2 SSGMG-ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF   49 (231)
Q Consensus         2 ~~~~~-~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~   49 (231)
                      ++.|+ ...++++++|++.+|  .+++|+|+||+|||||+++|+|...+
T Consensus        10 ~~~~~~~~~~l~~vsl~i~~G--e~~~i~G~NGsGKSTLl~~l~Gl~~p   56 (277)
T PRK13652         10 CYSYSGSKEALNNINFIAPRN--SRIAVIGPNGAGKSTLFRHFNGILKP   56 (277)
T ss_pred             EEEeCCCCceeeEeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            56774 567999999999999  99999999999999999999999873

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.00  E-value=2.6e-10  Score=91.44  Aligned_cols=46  Identities=22%  Similarity=0.219  Sum_probs=41.4

Q ss_pred             CCCCCC-cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053            2 SSGMGE-RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF   49 (231)
Q Consensus         2 ~~~~~~-~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~   49 (231)
                      ++.|++ +.++++++|++++|  .+++|+|+||+|||||+++|+|...+
T Consensus         9 ~~~~~~~~~~l~~isl~i~~G--~~~~i~G~nGsGKSTLl~~l~G~~~~   55 (229)
T cd03254           9 NFSYDEKKPVLKDINFSIKPG--ETVAIVGPTGAGKTTLINLLMRFYDP   55 (229)
T ss_pred             EEecCCCCccccceEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCcCC
Confidence            456764 57999999999999  99999999999999999999999873

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.00  E-value=2.2e-10  Score=93.54  Aligned_cols=78  Identities=15%  Similarity=0.143  Sum_probs=53.8

Q ss_pred             CCCCCC--cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE---EeeCCcEEE
Q 038053            2 SSGMGE--RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT---VLKDGQVVN   76 (231)
Q Consensus         2 ~~~~~~--~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~   76 (231)
                      +++|+.  ..++++++|++.+|  .+++|+|+||+|||||+++|+|...+    ..|.+.........   ........+
T Consensus        26 ~~~~~~~~~~il~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~----~~G~i~i~g~~i~~~~~~~~~~~i~~   99 (257)
T cd03288          26 CVRYENNLKPVLKHVKAYIKPG--QKVGICGRTGSGKSSLSLAFFRMVDI----FDGKIVIDGIDISKLPLHTLRSRLSI   99 (257)
T ss_pred             EEEeCCCCCcceeEEEEEEcCC--CEEEEECCCCCCHHHHHHHHHcccCC----CCCeEEECCEEhhhCCHHHHhhhEEE
Confidence            445654  57999999999999  99999999999999999999999763    34433332211000   001234567


Q ss_pred             EEeCCCCcC
Q 038053           77 VIDTPGLFD   85 (231)
Q Consensus        77 l~Dtpg~~~   85 (231)
                      +++.|.+++
T Consensus       100 v~q~~~l~~  108 (257)
T cd03288         100 ILQDPILFS  108 (257)
T ss_pred             ECCCCcccc
Confidence            777776654

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=98.99  E-value=1.7e-10  Score=93.90  Aligned_cols=82  Identities=20%  Similarity=0.106  Sum_probs=55.5

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcccc-ccCCCCcceeeeeeeE-----EeeCCcEE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKA-SADSSGVTKTCEMKTT-----VLKDGQVV   75 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~-~~~~~~~t~~~~~~~~-----~~~~~~~~   75 (231)
                      ++.|++..++++++|++.+|  .+++|+|+||||||||+++|+|...... .+..|.+.........     ........
T Consensus        13 ~~~~~~~~il~~is~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~   90 (253)
T PRK14242         13 SFFYGDFQALHDISLEFEQN--QVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVG   90 (253)
T ss_pred             EEEECCeeeecceeEEEeCC--CEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEE
Confidence            56777778999999999999  9999999999999999999999753100 0123333322211000     00024567


Q ss_pred             EEEeCCCCcC
Q 038053           76 NVIDTPGLFD   85 (231)
Q Consensus        76 ~l~Dtpg~~~   85 (231)
                      ++++.|.+++
T Consensus        91 ~v~q~~~~~~  100 (253)
T PRK14242         91 MVFQKPNPFP  100 (253)
T ss_pred             EEecCCCCCc
Confidence            7888887776

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.99  E-value=5e-11  Score=88.96  Aligned_cols=74  Identities=20%  Similarity=0.180  Sum_probs=54.1

Q ss_pred             CCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee---EEeeCCcEEEEEeCCC
Q 038053            6 GERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT---TVLKDGQVVNVIDTPG   82 (231)
Q Consensus         6 ~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~~l~Dtpg   82 (231)
                      ++..+++++||.+.+|  ..|+|.||+|||||||++.++..+.+    +.|..+.......   .+.++....|+.++|.
T Consensus        14 ~~a~il~~isl~v~~G--e~iaitGPSG~GKStllk~va~Lisp----~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~pa   87 (223)
T COG4619          14 GDAKILNNISLSVRAG--EFIAITGPSGCGKSTLLKIVASLISP----TSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPA   87 (223)
T ss_pred             CCCeeecceeeeecCC--ceEEEeCCCCccHHHHHHHHHhccCC----CCceEEEcCccccccChHHHHHHHHHHHcCcc
Confidence            5788999999999999  99999999999999999999999884    4443333222111   1111345566777887


Q ss_pred             CcC
Q 038053           83 LFD   85 (231)
Q Consensus        83 ~~~   85 (231)
                      +++
T Consensus        88 Lfg   90 (223)
T COG4619          88 LFG   90 (223)
T ss_pred             ccc
Confidence            765

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=98.99  E-value=6.4e-10  Score=91.85  Aligned_cols=63  Identities=14%  Similarity=0.189  Sum_probs=48.5

Q ss_pred             CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcC
Q 038053            7 ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD   85 (231)
Q Consensus         7 ~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~   85 (231)
                      .++++++++|++.+|  .+++|+|+||+|||||+++|+|...    +..|.++.          .+...++.+.|.+++
T Consensus        49 ~~~vL~~vs~~i~~G--e~~~liG~NGsGKSTLl~~I~Gl~~----p~~G~I~i----------~g~i~yv~q~~~l~~  111 (282)
T cd03291          49 GAPVLKNINLKIEKG--EMLAITGSTGSGKTSLLMLILGELE----PSEGKIKH----------SGRISFSSQFSWIMP  111 (282)
T ss_pred             cccceeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEEE----------CCEEEEEeCcccccc
Confidence            467999999999999  9999999999999999999999976    33443332          334555666665544

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.99  E-value=3.6e-10  Score=90.52  Aligned_cols=74  Identities=19%  Similarity=0.097  Sum_probs=53.7

Q ss_pred             CCCCC-cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee----EEeeCCcEEEE
Q 038053            3 SGMGE-RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT----TVLKDGQVVNV   77 (231)
Q Consensus         3 ~~~~~-~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~l   77 (231)
                      ..|.+ ..+++++++.+++|  ..++|+|+||||||||++.|.|...+.    .|.+..+.....    ........+++
T Consensus        11 ~~y~~~~~~l~~v~~~i~~G--e~~~i~G~nGsGKSTL~~~l~GLl~p~----~G~v~~~g~~~~~~~~~~~~~~~vG~V   84 (235)
T COG1122          11 FRYPGRKAALKDVSLEIEKG--ERVLLIGPNGSGKSTLLKLLNGLLKPT----SGEVLVDGLDTSSEKSLLELRQKVGLV   84 (235)
T ss_pred             EEcCCCceeeeeeEEEECCC--CEEEEECCCCCCHHHHHHHHcCcCcCC----CCEEEECCeeccchhhHHHhhcceEEE
Confidence            45554 48999999999999  999999999999999999999999843    333322211100    11115678888


Q ss_pred             EeCCC
Q 038053           78 IDTPG   82 (231)
Q Consensus        78 ~Dtpg   82 (231)
                      ++.|.
T Consensus        85 fQnpd   89 (235)
T COG1122          85 FQNPD   89 (235)
T ss_pred             EECcc
Confidence            88885

>cd04129 Rho2 Rho2 subfamily

Probab=98.99  E-value=3.6e-09  Score=82.14  Aligned_cols=137  Identities=14%  Similarity=0.117  Sum_probs=75.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeee-eeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCE-MKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKR  100 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~  100 (231)
                      .+|+++|++|+|||||++.++.....    .....|.... ...... .+  ..+.+.||||......        +.  
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~----~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~--------~~--   66 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFP----EEYHPTVFENYVTDCRV-DGKPVQLALWDTAGQEEYER--------LR--   66 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCC----cccCCcccceEEEEEEE-CCEEEEEEEEECCCChhccc--------cc--
Confidence            58999999999999999999844321    1111122111 111222 22  3466889999653211        00  


Q ss_pred             HhhhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhh-------------------HHHHHhh
Q 038053          101 IGLAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRG-------------------ATELRDQ  152 (231)
Q Consensus       101 ~~~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~-------------------~~~l~~~  152 (231)
                       ...+..+|+++++++.++.-+..+..         .....|++ .+.++.|..                   ...+...
T Consensus        67 -~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~pii-lvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (187)
T cd04129          67 -PLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVI-LVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKE  144 (187)
T ss_pred             -hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE-EEeeChhhhhCcccccccccCCcCCHHHHHHHHHH
Confidence             11236779999999987432222111         11223333 233433310                   0122222


Q ss_pred             cc--chhhhhhhhHhhHHHHHHHHHHH
Q 038053          153 QA--EVDSLKEYSKQEISKLMGQMQES  177 (231)
Q Consensus       153 ~~--~i~~is~~~~~~i~~l~~~i~~~  177 (231)
                      .+  +.+.+|+++|.|+++++..+.+.
T Consensus       145 ~~~~~~~e~Sa~~~~~v~~~f~~l~~~  171 (187)
T cd04129         145 IGAKKYMECSALTGEGVDDVFEAATRA  171 (187)
T ss_pred             hCCcEEEEccCCCCCCHHHHHHHHHHH
Confidence            22  56778999999999998887754

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=98.98  E-value=2.6e-10  Score=101.40  Aligned_cols=47  Identities=17%  Similarity=0.176  Sum_probs=43.3

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF   49 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~   49 (231)
                      +++.|++..++++++|++.+|  .+++|+|+||||||||+++|+|...+
T Consensus         9 l~~~~~~~~il~~vsl~i~~G--e~~~liG~nGsGKSTLl~~l~G~~~p   55 (490)
T PRK10938          9 GTFRLSDTKTLQLPSLTLNAG--DSWAFVGANGSGKSALARALAGELPL   55 (490)
T ss_pred             EEEEcCCeeecccceEEEcCC--CEEEEECCCCCCHHHHHHHHhccCCC
Confidence            367788888999999999999  99999999999999999999999874

>cd04121 Rab40 Rab40 subfamily

Probab=98.98  E-value=1.2e-08  Score=79.48  Aligned_cols=139  Identities=15%  Similarity=0.194  Sum_probs=79.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+++|..|+|||||++.+.+.... . ...+..+.+........ .+  ..+.+.||+|...           +....
T Consensus         7 ~KivviG~~~vGKTsll~~~~~~~~~-~-~~~~t~~~~~~~~~i~~-~~~~~~l~iwDt~G~~~-----------~~~l~   72 (189)
T cd04121           7 LKFLLVGDSDVGKGEILASLQDGSTE-S-PYGYNMGIDYKTTTILL-DGRRVKLQLWDTSGQGR-----------FCTIF   72 (189)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCC-C-CCCCcceeEEEEEEEEE-CCEEEEEEEEeCCCcHH-----------HHHHH
Confidence            68999999999999999999875321 1 11122222221122222 33  4567899999643           11122


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH--------hcCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------ANGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKEYS  163 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~~~  163 (231)
                      ...+..+|++++|+|.++..+-....        .....|++ .+.++.|..         ...+....+ +.+.+||++
T Consensus        73 ~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~pii-lVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~  151 (189)
T cd04121          73 RSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKI-LVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLC  151 (189)
T ss_pred             HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEE-EEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCC
Confidence            23447889999999998544433322        11122322 222332210         012222222 577889999


Q ss_pred             HhhHHHHHHHHHHH
Q 038053          164 KQEISKLMGQMQES  177 (231)
Q Consensus       164 ~~~i~~l~~~i~~~  177 (231)
                      |.|+++++..+...
T Consensus       152 g~~V~~~F~~l~~~  165 (189)
T cd04121         152 NFNITESFTELARI  165 (189)
T ss_pred             CCCHHHHHHHHHHH
Confidence            99999988887654

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd01855 YqeH YqeH

Probab=98.98  E-value=3.1e-10  Score=88.40  Aligned_cols=56  Identities=29%  Similarity=0.344  Sum_probs=40.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccc-------cccCCCCcceeeeeeeEEeeCCcEEEEEeCCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFK-------ASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGL   83 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~-------~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~   83 (231)
                      ..++++|.+|+|||||+|+|++.....       .....+++|+.......    +..++++||||+
T Consensus       128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~----~~~~~~~DtPG~  190 (190)
T cd01855         128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPL----GNGKKLYDTPGI  190 (190)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEec----CCCCEEEeCcCC
Confidence            689999999999999999999865321       11245566766544332    225789999996

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>TIGR00485 EF-Tu translation elongation factor TU

Probab=98.98  E-value=2e-09  Score=93.20  Aligned_cols=93  Identities=17%  Similarity=0.213  Sum_probs=61.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCc------ccc--------ccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCC
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKA------FKA--------SADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSA   88 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~------~~~--------~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~   88 (231)
                      ..+|+++|+.++|||||++.|++...      ...        .....+.|.+........ .+..+.++||||..+   
T Consensus        12 ~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~-~~~~~~liDtpGh~~---   87 (394)
T TIGR00485        12 HVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYET-ENRHYAHVDCPGHAD---   87 (394)
T ss_pred             eEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcC-CCEEEEEEECCchHH---
Confidence            37899999999999999999985411      100        001256666554433333 566788999999643   


Q ss_pred             CchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH
Q 038053           89 GSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA  127 (231)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~  127 (231)
                              +...+......+|.+++|+|+..++......
T Consensus        88 --------f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e  118 (394)
T TIGR00485        88 --------YVKNMITGAAQMDGAILVVSATDGPMPQTRE  118 (394)
T ss_pred             --------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHH
Confidence                    2222333346789999999998666665543

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.98  E-value=3.3e-10  Score=93.48  Aligned_cols=84  Identities=18%  Similarity=0.090  Sum_probs=55.9

Q ss_pred             CCCCCC---cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee---EEeeCCcEE
Q 038053            2 SSGMGE---RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT---TVLKDGQVV   75 (231)
Q Consensus         2 ~~~~~~---~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~   75 (231)
                      ++.|++   ..++++++|++.+|  .+++|+|+||+|||||+++|+|...+    ..|.++.......   ........+
T Consensus        11 ~~~~~~~~~~~~l~~v~l~i~~G--e~~~I~G~nGsGKSTLl~~l~Gl~~~----~~G~i~~~g~~i~~~~~~~~~~~i~   84 (277)
T PRK13642         11 VFKYEKESDVNQLNGVSFSITKG--EWVSIIGQNGSGKSTTARLIDGLFEE----FEGKVKIDGELLTAENVWNLRRKIG   84 (277)
T ss_pred             EEEcCCCCcCeeeeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCC----CCCEEEECCEECCcCCHHHHhcceE
Confidence            456653   35899999999999  99999999999999999999999873    4443433221110   000123467


Q ss_pred             EEEeCCC-CcCCCCCch
Q 038053           76 NVIDTPG-LFDSSAGSE   91 (231)
Q Consensus        76 ~l~Dtpg-~~~~~~~~~   91 (231)
                      ++++.|. ++...+..+
T Consensus        85 ~v~q~~~~~~~~~tv~e  101 (277)
T PRK13642         85 MVFQNPDNQFVGATVED  101 (277)
T ss_pred             EEEECHHHhhccCCHHH
Confidence            7788774 343333333

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=98.98  E-value=6e-09  Score=79.41  Aligned_cols=79  Identities=18%  Similarity=0.130  Sum_probs=51.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhh
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLA  104 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~  104 (231)
                      .|+++|.+|||||||+|.+++.......+     |.......... .+..+.++|+||...           +.......
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~-----t~g~~~~~~~~-~~~~~~i~D~~G~~~-----------~~~~~~~~   63 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGEIPKKVAP-----TVGFTPTKLRL-DKYEVCIFDLGGGAN-----------FRGIWVNY   63 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCCccccC-----cccceEEEEEE-CCEEEEEEECCCcHH-----------HHHHHHHH
Confidence            48999999999999999999873211111     21111222333 567788999999532           11112234


Q ss_pred             cCCccEEEEEEECCCC
Q 038053          105 KGGIHAVLVVFSVRSR  120 (231)
Q Consensus       105 ~~~~~~il~vvd~~~~  120 (231)
                      +..+|++++|+|.++.
T Consensus        64 ~~~a~~ii~V~D~s~~   79 (167)
T cd04161          64 YAEAHGLVFVVDSSDD   79 (167)
T ss_pred             HcCCCEEEEEEECCch
Confidence            4788999999999854

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=98.98  E-value=3.4e-10  Score=91.31  Aligned_cols=46  Identities=24%  Similarity=0.117  Sum_probs=40.7

Q ss_pred             CCCCCC---cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053            2 SSGMGE---RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF   49 (231)
Q Consensus         2 ~~~~~~---~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~   49 (231)
                      ++.|++   .+++++++|++++|  ..++|+|+||||||||+++|+|...+
T Consensus         7 ~~~~~~~~~~~~l~~i~~~i~~G--e~~~l~G~nGsGKSTLl~~i~G~~~~   55 (238)
T cd03249           7 SFRYPSRPDVPILKGLSLTIPPG--KTVALVGSSGCGKSTVVSLLERFYDP   55 (238)
T ss_pred             EEecCCCCCccceeceEEEecCC--CEEEEEeCCCCCHHHHHHHHhccCCC
Confidence            455653   46999999999999  99999999999999999999999873

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.98  E-value=2.7e-10  Score=94.56  Aligned_cols=46  Identities=22%  Similarity=0.164  Sum_probs=40.9

Q ss_pred             CCCCCCc-----ccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053            2 SSGMGER-----VIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF   49 (231)
Q Consensus         2 ~~~~~~~-----~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~   49 (231)
                      ++.|+++     .++++++|++.+|  .+++|+|+||||||||+++|+|...+
T Consensus        13 ~~~~~~~~~~~~~il~~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p   63 (289)
T PRK13645         13 SYTYAKKTPFEFKALNNTSLTFKKN--KVTCVIGTTGSGKSTMIQLTNGLIIS   63 (289)
T ss_pred             EEEeCCCCccccceeeeeEEEEeCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            4566653     4999999999999  99999999999999999999999873

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=98.98  E-value=3.9e-09  Score=80.83  Aligned_cols=135  Identities=17%  Similarity=0.113  Sum_probs=75.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      +++++|++|+|||||++.+++..-. .  ...++..+........ .+  ..+.++||||.....           ....
T Consensus         2 k~~i~G~~~~GKtsl~~~~~~~~~~-~--~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~-----------~~~~   66 (173)
T cd04130           2 KCVLVGDGAVGKTSLIVSYTTNGYP-T--EYVPTAFDNFSVVVLV-DGKPVRLQLCDTAGQDEFD-----------KLRP   66 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCC-C--CCCCceeeeeeEEEEE-CCEEEEEEEEECCCChhhc-----------cccc
Confidence            6899999999999999999875431 1  1111211111111222 22  456789999974311           1112


Q ss_pred             hhcCCccEEEEEEECCCCCCHHHH--H-------hcCCCCcHHHHHHHHHhh---------------------HHHHHhh
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEEE--A-------ANGGQPYTDEFLAELKRG---------------------ATELRDQ  152 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~~--~-------~~~~~~~~~~~~~~~~~~---------------------~~~l~~~  152 (231)
                      ..+..+|++++++|.+++-+....  .       .....|++ .+.++.|..                     ...+...
T Consensus        67 ~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~  145 (173)
T cd04130          67 LCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPII-LVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEK  145 (173)
T ss_pred             cccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEE-EEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHH
Confidence            244688999999999854332221  1       11123332 333443310                     0112111


Q ss_pred             c--cchhhhhhhhHhhHHHHHHHHH
Q 038053          153 Q--AEVDSLKEYSKQEISKLMGQMQ  175 (231)
Q Consensus       153 ~--~~i~~is~~~~~~i~~l~~~i~  175 (231)
                      .  .+++.+|+++|.|+++++..+.
T Consensus       146 ~~~~~~~e~Sa~~~~~v~~lf~~~~  170 (173)
T cd04130         146 IGACEYIECSALTQKNLKEVFDTAI  170 (173)
T ss_pred             hCCCeEEEEeCCCCCCHHHHHHHHH
Confidence            1  2577899999999999987653

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=98.98  E-value=2.6e-09  Score=96.43  Aligned_cols=91  Identities=18%  Similarity=0.322  Sum_probs=61.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccc--------------cCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKAS--------------ADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAG   89 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~--------------~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~   89 (231)
                      .+|+|+|..++|||||++.|+........              ....++|.........+ .+..+.++||||..+    
T Consensus         2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~-~~~kinlIDTPGh~D----   76 (594)
T TIGR01394         2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRY-NGTKINIVDTPGHAD----   76 (594)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEE-CCEEEEEEECCCHHH----
Confidence            47999999999999999999853211000              01235566555555666 788999999999754    


Q ss_pred             chHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHH
Q 038053           90 SEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEE  126 (231)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~  126 (231)
                             +.......+..+|.+++|+|+..+......
T Consensus        77 -------F~~ev~~~l~~aD~alLVVDa~~G~~~qT~  106 (594)
T TIGR01394        77 -------FGGEVERVLGMVDGVLLLVDASEGPMPQTR  106 (594)
T ss_pred             -------HHHHHHHHHHhCCEEEEEEeCCCCCcHHHH
Confidence                   112223344677999999999866655443

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=98.97  E-value=5.9e-10  Score=94.14  Aligned_cols=80  Identities=15%  Similarity=0.104  Sum_probs=56.0

Q ss_pred             cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-E-----EeeCCcEEEEEeCC
Q 038053            8 RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-T-----VLKDGQVVNVIDTP   81 (231)
Q Consensus         8 ~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-~-----~~~~~~~~~l~Dtp   81 (231)
                      ..++++++|++.+|  .+++|+|+||||||||+++|+|...+    ..|.+..+..... .     ........++++.|
T Consensus        34 ~~~l~~vsl~i~~G--e~~~lvG~sGsGKSTLlk~i~Gl~~p----~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~  107 (331)
T PRK15079         34 LKAVDGVTLRLYEG--ETLGVVGESGCGKSTFARAIIGLVKA----TDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDP  107 (331)
T ss_pred             eEEEeeEEEEEcCC--CEEEEECCCCCCHHHHHHHHHCCCCC----CCcEEEECCEECCcCCHHHHHHHhCceEEEecCc
Confidence            56899999999999  99999999999999999999999873    3443333221110 0     00134578888888


Q ss_pred             --CCcCCCCCchHH
Q 038053           82 --GLFDSSAGSEFV   93 (231)
Q Consensus        82 --g~~~~~~~~~~~   93 (231)
                        .+++..+..+.+
T Consensus       108 ~~~l~p~~tv~~~i  121 (331)
T PRK15079        108 LASLNPRMTIGEII  121 (331)
T ss_pred             hhhcCCCCCHHHHH
Confidence              466655544443

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=98.97  E-value=5.2e-09  Score=79.36  Aligned_cols=138  Identities=15%  Similarity=0.213  Sum_probs=74.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCc--EEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      +|+++|.+|+|||||++.+++....   ....+++.......... .+.  .+.++||||......  .    ...    
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~---~~~~~t~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~--~----~~~----   66 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFI---GEYDPNLESLYSRQVTI-DGEQVSLEILDTAGQQQADT--E----QLE----   66 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccc---cccCCChHHhceEEEEE-CCEEEEEEEEECCCCccccc--c----hHH----
Confidence            4899999999999999998764321   11111111111111222 332  467899999763110  0    111    


Q ss_pred             hhcCCccEEEEEEECCCCCCHHHHH--------h---cCCCCcHHHHHHHHHhhH---------HHHHhhcc-chhhhhh
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEEEA--------A---NGGQPYTDEFLAELKRGA---------TELRDQQA-EVDSLKE  161 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~~~--------~---~~~~~~~~~~~~~~~~~~---------~~l~~~~~-~i~~is~  161 (231)
                      ..+..+|++++++|+++.-+.....        .   ....|++ .+.++.|...         ..+....+ +++.+|+
T Consensus        67 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa  145 (165)
T cd04146          67 RSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVI-LVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSA  145 (165)
T ss_pred             HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCC
Confidence            1235679999999998543322111        1   2234443 3334433110         12222222 5677899


Q ss_pred             hhH-hhHHHHHHHHHHH
Q 038053          162 YSK-QEISKLMGQMQES  177 (231)
Q Consensus       162 ~~~-~~i~~l~~~i~~~  177 (231)
                      .++ .|+++++..+...
T Consensus       146 ~~~~~~v~~~f~~l~~~  162 (165)
T cd04146         146 AEDYDGVHSVFHELCRE  162 (165)
T ss_pred             CCCchhHHHHHHHHHHH
Confidence            988 5899988887653

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=98.97  E-value=1.4e-09  Score=82.10  Aligned_cols=45  Identities=29%  Similarity=0.292  Sum_probs=41.1

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      ++.|.+..+++++++++++|  ..++|+|+||+|||||+++|+|...
T Consensus         6 ~~~~~~~~~l~~~~~~i~~g--~~~~i~G~nGsGKStll~~l~g~~~   50 (157)
T cd00267           6 SFRYGGRTALDNVSLTLKAG--EIVALVGPNGSGKSTLLRAIAGLLK   50 (157)
T ss_pred             EEEeCCeeeEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            34566678999999999999  9999999999999999999999976

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.97  E-value=3e-10  Score=93.91  Aligned_cols=46  Identities=22%  Similarity=0.115  Sum_probs=40.7

Q ss_pred             CCCCCC-----cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053            2 SSGMGE-----RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF   49 (231)
Q Consensus         2 ~~~~~~-----~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~   49 (231)
                      ++.|++     .+++++++|++++|  .+++|+|+||||||||+++|+|...+
T Consensus         9 ~~~~~~~~~~~~~~l~~is~~i~~G--e~~~l~G~nGsGKSTLl~~i~Gl~~p   59 (280)
T PRK13649          9 SYTYQAGTPFEGRALFDVNLTIEDG--SYTAFIGHTGSGKSTIMQLLNGLHVP   59 (280)
T ss_pred             EEEcCCCCccccceeeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            456653     46999999999999  99999999999999999999999773

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=98.97  E-value=3.9e-10  Score=95.27  Aligned_cols=45  Identities=22%  Similarity=0.213  Sum_probs=40.3

Q ss_pred             CCCC----CCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053            2 SSGM----GERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus         2 ~~~~----~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      ++.|    +...++++++|++.+|  .+++|+|+||||||||+++|+|...
T Consensus        10 ~~~y~~~~~~~~~l~~vsl~i~~G--e~~~ivG~sGsGKSTLl~~i~Gl~~   58 (330)
T PRK15093         10 TIEFKTSDGWVKAVDRVSMTLTEG--EIRGLVGESGSGKSLIAKAICGVTK   58 (330)
T ss_pred             EEEEeCCCCCEEEEeeeEEEECCC--CEEEEECCCCCCHHHHHHHHHccCC
Confidence            4556    4467999999999999  9999999999999999999999975

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=98.97  E-value=7.7e-10  Score=93.27  Aligned_cols=45  Identities=22%  Similarity=0.298  Sum_probs=40.2

Q ss_pred             CCCCCC----cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053            2 SSGMGE----RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus         2 ~~~~~~----~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      ++.|+.    ..++++++|++.+|  .+++|+|+||||||||+++|+|...
T Consensus        10 ~~~~~~~~~~~~~l~~vsl~i~~G--e~~~lvG~sGsGKSTL~~~l~Gll~   58 (326)
T PRK11022         10 SVHFGDESAPFRAVDRISYSVKQG--EVVGIVGESGSGKSVSSLAIMGLID   58 (326)
T ss_pred             EEEECCCCccEEEEeeeEEEECCC--CEEEEECCCCChHHHHHHHHHcCCC
Confidence            455654    46999999999999  9999999999999999999999875

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=98.96  E-value=3.3e-10  Score=91.94  Aligned_cols=44  Identities=18%  Similarity=0.355  Sum_probs=41.1

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      +++|+++++++++++++.+|  .+++|+|+||+|||||+++|+|..
T Consensus         8 ~~~~~~~~~l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~   51 (248)
T PRK09580          8 HVSVEDKAILRGLNLEVRPG--EVHAIMGPNGSGKSTLSATLAGRE   51 (248)
T ss_pred             EEEeCCeeeeecceeEEcCC--CEEEEECCCCCCHHHHHHHHcCCc
Confidence            56788888999999999999  999999999999999999999984

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=98.96  E-value=2.7e-09  Score=81.19  Aligned_cols=24  Identities=38%  Similarity=0.621  Sum_probs=21.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCCcc
Q 038053           26 VVLLGRTGNGKSATGNSILGRKAF   49 (231)
Q Consensus        26 i~lvG~~g~GKSTLin~l~g~~~~   49 (231)
                      |+++|..++|||||||+|+|....
T Consensus         1 V~v~G~~ssGKSTliNaLlG~~il   24 (168)
T PF00350_consen    1 VAVVGQFSSGKSTLINALLGRPIL   24 (168)
T ss_dssp             EEEEEBTTSSHHHHHHHHHTSS-S
T ss_pred             CEEEcCCCCCHHHHHHHHHhcccC
Confidence            789999999999999999998743

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>PRK10218 GTP-binding protein; Provisional

Probab=98.96  E-value=3.2e-09  Score=95.89  Aligned_cols=129  Identities=16%  Similarity=0.182  Sum_probs=79.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccc--------------cCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKAS--------------ADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAG   89 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~--------------~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~   89 (231)
                      .+|+++|..|+|||||++.|+........              ....+.|.........+ .+..+.++||||..+..  
T Consensus         6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~-~~~~inliDTPG~~df~--   82 (607)
T PRK10218          6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKW-NDYRINIVDTPGHADFG--   82 (607)
T ss_pred             eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEec-CCEEEEEEECCCcchhH--
Confidence            68999999999999999999964221100              01234555544445555 77889999999976521  


Q ss_pred             chHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhhH-------HHHHhhc----
Q 038053           90 SEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRGA-------TELRDQQ----  153 (231)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-------~~l~~~~----  153 (231)
                           ..    ....+..+|++++|+|+.++.......     ...+.|.+ .++|++|...       +++.+.+    
T Consensus        83 -----~~----v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~I-VviNKiD~~~a~~~~vl~ei~~l~~~l~  152 (607)
T PRK10218         83 -----GE----VERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPI-VVINKVDRPGARPDWVVDQVFDLFVNLD  152 (607)
T ss_pred             -----HH----HHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEE-EEEECcCCCCCchhHHHHHHHHHHhccC
Confidence                 11    223446789999999998766554433     22334443 3445544211       1222221    


Q ss_pred             -------cchhhhhhhhHh
Q 038053          154 -------AEVDSLKEYSKQ  165 (231)
Q Consensus       154 -------~~i~~is~~~~~  165 (231)
                             -|+++.|+++|.
T Consensus       153 ~~~~~~~~PVi~~SA~~G~  171 (607)
T PRK10218        153 ATDEQLDFPIVYASALNGI  171 (607)
T ss_pred             ccccccCCCEEEeEhhcCc
Confidence                   157788998886

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.96  E-value=2.1e-09  Score=79.72  Aligned_cols=57  Identities=30%  Similarity=0.433  Sum_probs=41.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD   85 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~   85 (231)
                      .+++++|.+|+|||||+|.|++...... ...++.|.......  .  +..++++||||+..
T Consensus        84 ~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~~~~~~~~~--~--~~~~~i~DtpG~~~  140 (141)
T cd01857          84 ATIGLVGYPNVGKSSLINALVGKKKVSV-SATPGKTKHFQTIF--L--TPTITLCDCPGLVF  140 (141)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceee-CCCCCcccceEEEE--e--CCCEEEEECCCcCC
Confidence            3899999999999999999999876543 34555665443322  2  23578999999863

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=98.96  E-value=3.5e-10  Score=103.40  Aligned_cols=47  Identities=34%  Similarity=0.444  Sum_probs=43.4

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF   49 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~   49 (231)
                      +++.|+++.+|++++|++.+|  .+++|+|+||||||||+++|+|...+
T Consensus       318 l~~~y~~~~il~~isl~i~~G--e~~~l~G~NGsGKSTLlk~l~G~~~p  364 (638)
T PRK10636        318 VSAGYGDRIILDSIKLNLVPG--SRIGLLGRNGAGKSTLIKLLAGELAP  364 (638)
T ss_pred             eEEEeCCeeeeccceEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            356788889999999999999  99999999999999999999999873

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.96  E-value=3.3e-10  Score=93.76  Aligned_cols=75  Identities=15%  Similarity=0.085  Sum_probs=54.5

Q ss_pred             CCCCC-CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee---E--EeeCCcEE
Q 038053            2 SSGMG-ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT---T--VLKDGQVV   75 (231)
Q Consensus         2 ~~~~~-~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~---~--~~~~~~~~   75 (231)
                      ++.|+ ++.++++++|++.+|  ..++|+|+||+|||||+++|+|...    +..|.++.......   .  ........
T Consensus        12 ~~~~~~~~~~l~~vs~~i~~G--e~~~i~G~nGaGKSTLl~~i~Gl~~----p~~G~i~i~g~~~~~~~~~~~~~~~~ig   85 (283)
T PRK13636         12 NYNYSDGTHALKGININIKKG--EVTAILGGNGAGKSTLFQNLNGILK----PSSGRILFDGKPIDYSRKGLMKLRESVG   85 (283)
T ss_pred             EEEeCCCCeeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCC----CCccEEEECCEECCCCcchHHHHHhhEE
Confidence            56775 577999999999999  9999999999999999999999987    34444443332110   0  00124567


Q ss_pred             EEEeCCC
Q 038053           76 NVIDTPG   82 (231)
Q Consensus        76 ~l~Dtpg   82 (231)
                      ++++.|.
T Consensus        86 ~v~q~~~   92 (283)
T PRK13636         86 MVFQDPD   92 (283)
T ss_pred             EEecCcc
Confidence            7888774

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.96  E-value=4.4e-10  Score=93.98  Aligned_cols=82  Identities=17%  Similarity=0.084  Sum_probs=55.8

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccc-cccCCCCcceeeeee-eE----EeeCCcEE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFK-ASADSSGVTKTCEMK-TT----VLKDGQVV   75 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~-~~~~~~~~t~~~~~~-~~----~~~~~~~~   75 (231)
                      ++.|+++.+|++++|++.+|  .+++|+|+||+|||||+++|+|...+. ..+..|.+....... ..    ........
T Consensus        52 ~~~~~~~~iL~~is~~i~~G--e~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~  129 (305)
T PRK14264         52 DVYYGDDHALKGVSMDIPEK--SVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVG  129 (305)
T ss_pred             EEEeCCeeeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceE
Confidence            45677788999999999999  999999999999999999999986410 001233222221110 00    00124567


Q ss_pred             EEEeCCCCcC
Q 038053           76 NVIDTPGLFD   85 (231)
Q Consensus        76 ~l~Dtpg~~~   85 (231)
                      ++++.+.+++
T Consensus       130 ~v~q~~~l~~  139 (305)
T PRK14264        130 MVFQSPNPFP  139 (305)
T ss_pred             EEccCCcccc
Confidence            8888887765

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=98.96  E-value=2e-10  Score=103.08  Aligned_cols=78  Identities=21%  Similarity=0.160  Sum_probs=57.3

Q ss_pred             CCCCCC-cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee---eEEeeCCcEEEE
Q 038053            2 SSGMGE-RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK---TTVLKDGQVVNV   77 (231)
Q Consensus         2 ~~~~~~-~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~l   77 (231)
                      +.+|++ .++|+|+++++++|  ..++|+|++|||||||+|+|+|...    +..|.+..+....   ...+ .....++
T Consensus       341 sf~Y~~~~~vL~~isl~i~~G--~~vaIvG~SGsGKSTLl~lL~g~~~----p~~G~I~i~g~~i~~~~~~l-r~~i~~V  413 (529)
T TIGR02868       341 SFGYPGSPPVLDGVSLDLPPG--ERVAILGPSGSGKSTLLMLLTGLLD----PLQGEVTLDGVSVSSLQDEL-RRRISVF  413 (529)
T ss_pred             EEecCCCCceeecceEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCC----CCCcEEEECCEEhhhHHHHH-HhheEEE
Confidence            445653 56899999999999  9999999999999999999999988    3444444322110   1111 3467788


Q ss_pred             EeCCCCcCC
Q 038053           78 IDTPGLFDS   86 (231)
Q Consensus        78 ~Dtpg~~~~   86 (231)
                      .+.|-++++
T Consensus       414 ~Q~~~lF~~  422 (529)
T TIGR02868       414 AQDAHLFDT  422 (529)
T ss_pred             ccCcccccc
Confidence            999888764

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=98.96  E-value=4.1e-10  Score=90.67  Aligned_cols=46  Identities=20%  Similarity=0.219  Sum_probs=41.3

Q ss_pred             CCCCC-CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053            2 SSGMG-ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF   49 (231)
Q Consensus         2 ~~~~~-~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~   49 (231)
                      ++.|+ ++.+++++++++++|  .+++|+|+||+|||||+++|+|...+
T Consensus         7 ~~~~~~~~~~l~~i~~~i~~G--e~~~l~G~nGsGKSTLl~~i~Gl~~~   53 (236)
T cd03253           7 TFAYDPGRPVLKDVSFTIPAG--KKVAIVGPSGSGKSTILRLLFRFYDV   53 (236)
T ss_pred             EEEeCCCCceeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcccCC
Confidence            45674 567999999999999  99999999999999999999999873

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd01892 Miro2 Miro2 subfamily

Probab=98.96  E-value=2.2e-09  Score=81.99  Aligned_cols=140  Identities=16%  Similarity=0.084  Sum_probs=78.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+++|.+|||||||++.+++...... ...+............. .+  ..+.+.|++|.....        .+   .
T Consensus         5 ~kv~~vG~~~vGKTsli~~~~~~~f~~~-~~~~T~~~~~~~~~~~~-~~~~~~l~~~d~~g~~~~~--------~~---~   71 (169)
T cd01892           5 FLCFVLGAKGSGKSALLRAFLGRSFSLN-AYSPTIKPRYAVNTVEV-YGQEKYLILREVGEDEVAI--------LL---N   71 (169)
T ss_pred             EEEEEECCCCCcHHHHHHHHhCCCCCcc-cCCCccCcceEEEEEEE-CCeEEEEEEEecCCccccc--------cc---c
Confidence            7899999999999999999998764201 11121111111122222 33  345667888854321        01   1


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH-----h--cCCCCcHHHHHHHHHhh---------HHHHHhhcc--chhhhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA-----A--NGGQPYTDEFLAELKRG---------ATELRDQQA--EVDSLKEYS  163 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~---------~~~l~~~~~--~i~~is~~~  163 (231)
                      ...+..+|++++|+|+++.-+.....     .  ....|++ .+.++.|..         ..++...++  .+..+|+.+
T Consensus        72 ~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~i-iv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  150 (169)
T cd01892          72 DAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCL-FVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKL  150 (169)
T ss_pred             hhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEE-EEEEcccccccccccccCHHHHHHHcCCCCCEEEEecc
Confidence            12246889999999998543222211     1  1123333 334443310         023333333  356789999


Q ss_pred             HhhHHHHHHHHHHH
Q 038053          164 KQEISKLMGQMQES  177 (231)
Q Consensus       164 ~~~i~~l~~~i~~~  177 (231)
                      |.|+.+++..+.+.
T Consensus       151 ~~~v~~lf~~l~~~  164 (169)
T cd01892         151 GDSSNELFTKLATA  164 (169)
T ss_pred             CccHHHHHHHHHHH
Confidence            99999988887664

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd01871 Rac1_like Rac1-like subfamily

Probab=98.95  E-value=7.7e-09  Score=79.44  Aligned_cols=136  Identities=15%  Similarity=0.093  Sum_probs=75.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKR  100 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~  100 (231)
                      .+|+++|.+|||||||+..+++..-.    .....|...... .... .+  ..+.+.||||.....           ..
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~----~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~-----------~~   65 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFP----GEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDYD-----------RL   65 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCC----CcCCCcceeeeEEEEEE-CCEEEEEEEEECCCchhhh-----------hh
Confidence            57999999999999999988865321    111112211111 1112 22  456789999964311           11


Q ss_pred             HhhhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhh---------------------HHHHH
Q 038053          101 IGLAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRG---------------------ATELR  150 (231)
Q Consensus       101 ~~~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~---------------------~~~l~  150 (231)
                      ....+..+|++++|+|.++.-+-....         .....|++ .+.++.|..                     +..+.
T Consensus        66 ~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~pii-lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~  144 (174)
T cd01871          66 RPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII-LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA  144 (174)
T ss_pred             hhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE-EEeeChhhccChhhHHHHhhccCCCCCHHHHHHHH
Confidence            122356889999999998533222211         11122333 233333210                     01122


Q ss_pred             hhcc--chhhhhhhhHhhHHHHHHHHHH
Q 038053          151 DQQA--EVDSLKEYSKQEISKLMGQMQE  176 (231)
Q Consensus       151 ~~~~--~i~~is~~~~~~i~~l~~~i~~  176 (231)
                      ...+  +++.+||++|.|+++++..+..
T Consensus       145 ~~~~~~~~~e~Sa~~~~~i~~~f~~l~~  172 (174)
T cd01871         145 KEIGAVKYLECSALTQKGLKTVFDEAIR  172 (174)
T ss_pred             HHcCCcEEEEecccccCCHHHHHHHHHH
Confidence            2222  4567899999999999877654

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.95  E-value=3.5e-10  Score=93.26  Aligned_cols=46  Identities=20%  Similarity=0.059  Sum_probs=41.4

Q ss_pred             CCCCC-CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053            2 SSGMG-ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF   49 (231)
Q Consensus         2 ~~~~~-~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~   49 (231)
                      ++.|+ ...++++++|++.+|  .+++|+|+||||||||+++|+|...+
T Consensus         8 ~~~~~~~~~~l~~vsl~i~~G--e~~~l~G~nGsGKSTLl~~i~Gl~~~   54 (275)
T PRK13639          8 KYSYPDGTEALKGINFKAEKG--EMVALLGPNGAGKSTLFLHFNGILKP   54 (275)
T ss_pred             EEEeCCCCeeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            56675 467999999999999  99999999999999999999999873

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=98.95  E-value=3.4e-10  Score=94.56  Aligned_cols=39  Identities=13%  Similarity=0.114  Sum_probs=37.2

Q ss_pred             ccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053            9 VIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF   49 (231)
Q Consensus         9 ~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~   49 (231)
                      .+|++++|++.+|  .+++|+|+||||||||+++|+|...+
T Consensus        21 ~~l~~vsl~i~~G--e~v~iiG~nGsGKSTLl~~L~Gl~~p   59 (305)
T PRK13651         21 KALDNVSVEINQG--EFIAIIGQTGSGKTTFIEHLNALLLP   59 (305)
T ss_pred             cceeeeEEEEeCC--CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence            5999999999999  99999999999999999999999873

>cd04134 Rho3 Rho3 subfamily

Probab=98.95  E-value=3e-09  Score=82.78  Aligned_cols=137  Identities=14%  Similarity=0.050  Sum_probs=75.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEEee-CCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      +|+++|.+|+|||||++.+++.....    ....|...... ..... ....+.+.||||.....        .+   ..
T Consensus         2 kivivG~~~vGKTsli~~~~~~~~~~----~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~--------~l---~~   66 (189)
T cd04134           2 KVVVLGDGACGKTSLLNVFTRGYFPQ----VYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFD--------RL---RS   66 (189)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCC----ccCCcceeeeEEEEEECCEEEEEEEEECCCChhcc--------cc---cc
Confidence            68999999999999999999875421    11112211111 11110 12457789999964311        01   11


Q ss_pred             hhcCCccEEEEEEECCCCCCHHHH---H------hcCCCCcHHHHHHHHHhhH---------------------HHHHhh
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEEE---A------ANGGQPYTDEFLAELKRGA---------------------TELRDQ  152 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~~---~------~~~~~~~~~~~~~~~~~~~---------------------~~l~~~  152 (231)
                      ..+..+|++++|+|+++.-+....   .      .....|++ .+.++.|...                     ..+...
T Consensus        67 ~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~pii-lvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  145 (189)
T cd04134          67 LSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLV-LVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKR  145 (189)
T ss_pred             ccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE-EEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHH
Confidence            234678999999998854222211   1      11223332 2233322100                     011111


Q ss_pred             cc--chhhhhhhhHhhHHHHHHHHHHH
Q 038053          153 QA--EVDSLKEYSKQEISKLMGQMQES  177 (231)
Q Consensus       153 ~~--~i~~is~~~~~~i~~l~~~i~~~  177 (231)
                      .+  +.+.+||++|.|+++++..+...
T Consensus       146 ~~~~~~~e~SAk~~~~v~e~f~~l~~~  172 (189)
T cd04134         146 INALRYLECSAKLNRGVNEAFTEAARV  172 (189)
T ss_pred             cCCCEEEEccCCcCCCHHHHHHHHHHH
Confidence            12  45678999999999998877654

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=98.95  E-value=6.1e-10  Score=88.01  Aligned_cols=46  Identities=20%  Similarity=0.225  Sum_probs=42.8

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF   49 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~   49 (231)
                      +..|+++.+|++++.++++|  .+.+|+|+||||||||++.++|...+
T Consensus        38 ~v~r~gk~iL~~isW~V~~g--e~W~I~G~NGsGKTTLL~ll~~~~~p   83 (257)
T COG1119          38 SVRRNGKKILGDLSWQVNPG--EHWAIVGPNGAGKTTLLSLLTGEHPP   83 (257)
T ss_pred             EEEECCEeeccccceeecCC--CcEEEECCCCCCHHHHHHHHhcccCC
Confidence            44678999999999999999  99999999999999999999999873

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.95  E-value=3.4e-10  Score=93.99  Aligned_cols=46  Identities=24%  Similarity=0.165  Sum_probs=40.8

Q ss_pred             CCCCCC-----cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053            2 SSGMGE-----RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF   49 (231)
Q Consensus         2 ~~~~~~-----~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~   49 (231)
                      ++.|+.     ..+|+++++++.+|  .+++|+|+||||||||+++|+|...+
T Consensus         9 ~~~y~~~~~~~~~~L~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p   59 (290)
T PRK13634          9 EHRYQYKTPFERRALYDVNVSIPSG--SYVAIIGHTGSGKSTLLQHLNGLLQP   59 (290)
T ss_pred             EEEECCCCcccccceeeEEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCC
Confidence            455653     46999999999999  99999999999999999999999873

>cd04169 RF3 RF3 subfamily

Probab=98.95  E-value=6.7e-09  Score=85.16  Aligned_cols=90  Identities=16%  Similarity=0.215  Sum_probs=56.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccc---cC----CCC-------------cceeeeeeeEEeeCCcEEEEEeCCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKAS---AD----SSG-------------VTKTCEMKTTVLKDGQVVNVIDTPGL   83 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~---~~----~~~-------------~t~~~~~~~~~~~~~~~~~l~Dtpg~   83 (231)
                      .+|+|+|++|+|||||+++|+.....+..   ..    .+.             .+.........+ .+..+.++||||.
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~-~~~~i~liDTPG~   81 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEY-RDCVINLLDTPGH   81 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEee-CCEEEEEEECCCc
Confidence            58999999999999999999854321110   00    111             111122224455 6788999999997


Q ss_pred             cCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHH
Q 038053           84 FDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEE  125 (231)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~  125 (231)
                      .+.       ..+.    ...+..+|++++|+|+++++....
T Consensus        82 ~df-------~~~~----~~~l~~aD~~IlVvda~~g~~~~~  112 (267)
T cd04169          82 EDF-------SEDT----YRTLTAVDSAVMVIDAAKGVEPQT  112 (267)
T ss_pred             hHH-------HHHH----HHHHHHCCEEEEEEECCCCccHHH
Confidence            641       1112    223356799999999987665443

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=98.95  E-value=5.1e-10  Score=90.23  Aligned_cols=46  Identities=22%  Similarity=0.149  Sum_probs=41.0

Q ss_pred             CCCCC--CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053            2 SSGMG--ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF   49 (231)
Q Consensus         2 ~~~~~--~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~   49 (231)
                      ++.|+  ...++++++|++++|  .+++|+|+||+|||||+++|+|...+
T Consensus         7 ~~~~~~~~~~~l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~   54 (237)
T cd03252           7 RFRYKPDGPVILDNISLRIKPG--EVVGIVGRSGSGKSTLTKLIQRFYVP   54 (237)
T ss_pred             EEecCCCCccceeceEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCcCC
Confidence            45665  357999999999999  99999999999999999999999873

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.94  E-value=2.7e-10  Score=92.59  Aligned_cols=81  Identities=14%  Similarity=-0.003  Sum_probs=54.9

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc--cccccCCCCcceeeeeeeE-----EeeCCcE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA--FKASADSSGVTKTCEMKTT-----VLKDGQV   74 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~--~~~~~~~~~~t~~~~~~~~-----~~~~~~~   74 (231)
                      ++.|+.+.++++++|++.+|  .+++|+|+||+|||||+++|+|...  +.. +..|.+..+......     .......
T Consensus        10 ~~~~~~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i   86 (250)
T PRK14245         10 NFWYGDFHALKGISMEIEEK--SVVAFIGPSGCGKSTFLRLFNRMNDLIPAT-RLEGEIRIDGRNIYDKGVQVDELRKNV   86 (250)
T ss_pred             EEEECCEeEEeeeeEEEeCC--CEEEEECCCCCCHHHHHHHHhhhhcccCCC-CCceEEEECCEecccccccHHHHhhhe
Confidence            56778888999999999999  9999999999999999999999631  100 012333322211100     0112356


Q ss_pred             EEEEeCCCCcC
Q 038053           75 VNVIDTPGLFD   85 (231)
Q Consensus        75 ~~l~Dtpg~~~   85 (231)
                      .++++.|.+++
T Consensus        87 ~~v~q~~~~~~   97 (250)
T PRK14245         87 GMVFQRPNPFP   97 (250)
T ss_pred             EEEecCCccCc
Confidence            78888887765

>PRK05433 GTP-binding protein LepA; Provisional

Probab=98.94  E-value=3e-09  Score=96.35  Aligned_cols=143  Identities=17%  Similarity=0.244  Sum_probs=87.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccc-------------cCCCCcceeeeeeeEEee----CCcEEEEEeCCCCcCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKAS-------------ADSSGVTKTCEMKTTVLK----DGQVVNVIDTPGLFDS   86 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~-------------~~~~~~t~~~~~~~~~~~----~~~~~~l~Dtpg~~~~   86 (231)
                      .+|+|+|..++|||||+..|+........             ....+.|.........+.    ....+.++||||..+.
T Consensus         8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF   87 (600)
T PRK05433          8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF   87 (600)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH
Confidence            68999999999999999999753211100             011244444333333331    2456889999998752


Q ss_pred             CCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhhH-------HHHHhhcc
Q 038053           87 SAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRGA-------TELRDQQA  154 (231)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-------~~l~~~~~  154 (231)
                             ..++    ..++..+|++++|+|+++++......     .....+++ .++|++|...       .++.+.+.
T Consensus        88 -------~~~v----~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiI-vViNKiDl~~a~~~~v~~ei~~~lg  155 (600)
T PRK05433         88 -------SYEV----SRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEII-PVLNKIDLPAADPERVKQEIEDVIG  155 (600)
T ss_pred             -------HHHH----HHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEE-EEEECCCCCcccHHHHHHHHHHHhC
Confidence                   1122    23345679999999998777655543     22233433 3445554211       23333332


Q ss_pred             ----chhhhhhhhHhhHHHHHHHHHHHH
Q 038053          155 ----EVDSLKEYSKQEISKLMGQMQESY  178 (231)
Q Consensus       155 ----~i~~is~~~~~~i~~l~~~i~~~~  178 (231)
                          .++++|+++|.|+.++++.+....
T Consensus       156 ~~~~~vi~iSAktG~GI~~Ll~~I~~~l  183 (600)
T PRK05433        156 IDASDAVLVSAKTGIGIEEVLEAIVERI  183 (600)
T ss_pred             CCcceEEEEecCCCCCHHHHHHHHHHhC
Confidence                367899999999999988886643

>cd04143 Rhes_like Rhes_like subfamily

Probab=98.94  E-value=8.9e-09  Score=83.52  Aligned_cols=136  Identities=19%  Similarity=0.196  Sum_probs=77.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcce-eeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTK-TCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~-~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      +|+++|.+|+|||||++.+++....    .....|. +........ .+  ..+.+.||+|.....        .+.   
T Consensus         2 KVvvlG~~gvGKTSLi~r~~~~~f~----~~y~pTi~d~~~k~~~i-~~~~~~l~I~Dt~G~~~~~--------~~~---   65 (247)
T cd04143           2 RMVVLGASKVGKTAIVSRFLGGRFE----EQYTPTIEDFHRKLYSI-RGEVYQLDILDTSGNHPFP--------AMR---   65 (247)
T ss_pred             EEEEECcCCCCHHHHHHHHHcCCCC----CCCCCChhHhEEEEEEE-CCEEEEEEEEECCCChhhh--------HHH---
Confidence            6899999999999999999865431    1111122 111222222 33  456789999965311        111   


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH--------h----------cCCCCcHHHHHHHHHhh------HHHHHhhc----
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------A----------NGGQPYTDEFLAELKRG------ATELRDQQ----  153 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~----------~~~~~~~~~~~~~~~~~------~~~l~~~~----  153 (231)
                      ...+..+|++++|+|+++.-+-....        .          ....|++ .+.++.|..      .+++...+    
T Consensus        66 ~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piI-ivgNK~Dl~~~~~v~~~ei~~~~~~~~  144 (247)
T cd04143          66 RLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMV-ICGNKADRDFPREVQRDEVEQLVGGDE  144 (247)
T ss_pred             HHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEE-EEEECccchhccccCHHHHHHHHHhcC
Confidence            11235789999999998543222111        0          0123333 333443311      12333222    


Q ss_pred             -cchhhhhhhhHhhHHHHHHHHHHH
Q 038053          154 -AEVDSLKEYSKQEISKLMGQMQES  177 (231)
Q Consensus       154 -~~i~~is~~~~~~i~~l~~~i~~~  177 (231)
                       ..++.+||+++.|+++++..+...
T Consensus       145 ~~~~~evSAktg~gI~elf~~L~~~  169 (247)
T cd04143         145 NCAYFEVSAKKNSNLDEMFRALFSL  169 (247)
T ss_pred             CCEEEEEeCCCCCCHHHHHHHHHHH
Confidence             146779999999999999888764

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=98.94  E-value=4.4e-09  Score=86.38  Aligned_cols=88  Identities=25%  Similarity=0.377  Sum_probs=55.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcccc--c-cCCC-------------CcceeeeeeeEEeeCCcEEEEEeCCCCcCCCC
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKA--S-ADSS-------------GVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSA   88 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~--~-~~~~-------------~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~   88 (231)
                      +|+|+|++|+|||||+|.|++......  + ...+             +.+.........+ .+..+.++||||..+   
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtPG~~~---   76 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEW-KGHKINLIDTPGYAD---   76 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEE-CCEEEEEEECcCHHH---
Confidence            489999999999999999975432110  0 0111             1222222333444 677889999999753   


Q ss_pred             CchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHH
Q 038053           89 GSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQE  124 (231)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~  124 (231)
                              +......++..+|.+++|+|++.+....
T Consensus        77 --------f~~~~~~~l~~aD~~i~Vvd~~~g~~~~  104 (268)
T cd04170          77 --------FVGETRAALRAADAALVVVSAQSGVEVG  104 (268)
T ss_pred             --------HHHHHHHHHHHCCEEEEEEeCCCCCCHH
Confidence                    1112223345679999999998665544

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>cd04120 Rab12 Rab12 subfamily

Probab=98.94  E-value=1.8e-08  Score=79.34  Aligned_cols=139  Identities=14%  Similarity=0.175  Sum_probs=78.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      .|+++|.+|+|||||++.++...-. . ...+..+.+........ .+  ..+.+.||+|...           +.....
T Consensus         2 ~vvvlG~~gVGKTSli~r~~~~~f~-~-~~~~Ti~~~~~~~~i~~-~~~~v~l~iwDtaGqe~-----------~~~l~~   67 (202)
T cd04120           2 QVIIIGSRGVGKTSLMRRFTDDTFC-E-ACKSGVGVDFKIKTVEL-RGKKIRLQIWDTAGQER-----------FNSITS   67 (202)
T ss_pred             EEEEECcCCCCHHHHHHHHHhCCCC-C-cCCCcceeEEEEEEEEE-CCEEEEEEEEeCCCchh-----------hHHHHH
Confidence            5899999999999999999865431 1 01111122222222233 33  5667899999643           111122


Q ss_pred             hhcCCccEEEEEEECCCCCCHHHHH--------h-cCCCCcHHHHHHHHHhh---------HHHHHhhc-c-chhhhhhh
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEEEA--------A-NGGQPYTDEFLAELKRG---------ATELRDQQ-A-EVDSLKEY  162 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~---------~~~l~~~~-~-~i~~is~~  162 (231)
                      ..+..+|++++|+|.++.-+-....        . ....+++ .+.++.|..         ...+.... + .++.+||+
T Consensus        68 ~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~pii-lVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAk  146 (202)
T cd04120          68 AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELL-LVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAK  146 (202)
T ss_pred             HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEE-EEEECcccccccccCHHHHHHHHHhcCCCEEEEecCC
Confidence            3457889999999998543332221        1 1122222 233333310         01222121 2 46678999


Q ss_pred             hHhhHHHHHHHHHHHH
Q 038053          163 SKQEISKLMGQMQESY  178 (231)
Q Consensus       163 ~~~~i~~l~~~i~~~~  178 (231)
                      +|.|+.+++..+....
T Consensus       147 tg~gV~e~F~~l~~~~  162 (202)
T cd04120         147 DNFNVDEIFLKLVDDI  162 (202)
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            9999999988876643

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.94  E-value=4.6e-09  Score=86.60  Aligned_cols=59  Identities=27%  Similarity=0.387  Sum_probs=44.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSS   87 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~   87 (231)
                      ..++++|.||+|||||+|.|++.....++ ..+++|+..+...    -+..+.++||||+....
T Consensus       119 ~~~~~vG~~nvGKSslin~l~~~~~~~~~-~~~g~T~~~~~~~----~~~~~~l~DtPG~~~~~  177 (276)
T TIGR03596       119 IRAMIVGIPNVGKSTLINRLAGKKVAKVG-NRPGVTKGQQWIK----LSDGLELLDTPGILWPK  177 (276)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCccccC-CCCCeecceEEEE----eCCCEEEEECCCcccCC
Confidence            68999999999999999999998755553 5667776554322    23457899999996543

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>PLN03127 Elongation factor Tu; Provisional

Probab=98.93  E-value=2.3e-09  Score=93.86  Aligned_cols=93  Identities=18%  Similarity=0.171  Sum_probs=62.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCc------ccc--------ccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCC
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKA------FKA--------SADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSA   88 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~------~~~--------~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~   88 (231)
                      ..+|+++|+.++|||||++.|++...      ...        .....++|.+........ .+..+.++||||..+   
T Consensus        61 ~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~~iDtPGh~~---  136 (447)
T PLN03127         61 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYET-AKRHYAHVDCPGHAD---  136 (447)
T ss_pred             eEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcC-CCeEEEEEECCCccc---
Confidence            37899999999999999999984311      000        011256676655444444 567889999999753   


Q ss_pred             CchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH
Q 038053           89 GSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA  127 (231)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~  127 (231)
                              +..........+|++++|+|+..++..++..
T Consensus       137 --------f~~~~~~g~~~aD~allVVda~~g~~~qt~e  167 (447)
T PLN03127        137 --------YVKNMITGAAQMDGGILVVSAPDGPMPQTKE  167 (447)
T ss_pred             --------hHHHHHHHHhhCCEEEEEEECCCCCchhHHH
Confidence                    2222222334689999999998777666544

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=98.93  E-value=6.6e-09  Score=95.05  Aligned_cols=138  Identities=11%  Similarity=0.083  Sum_probs=81.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCCccccc--------------c-----------------CCCCcceeeeeeeEEee
Q 038053           22 GKRTVVLLGRTGNGKSATGNSILGRKAFKAS--------------A-----------------DSSGVTKTCEMKTTVLK   70 (231)
Q Consensus        22 ~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~--------------~-----------------~~~~~t~~~~~~~~~~~   70 (231)
                      +..+|+++|++|+|||||+|.|+.....+..              .                 ...+.|.+.......+ 
T Consensus        23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~-  101 (632)
T PRK05506         23 SLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT-  101 (632)
T ss_pred             CeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc-
Confidence            3378999999999999999999976533220              0                 0123344444444444 


Q ss_pred             CCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhh
Q 038053           71 DGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRG  145 (231)
Q Consensus        71 ~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~  145 (231)
                      .+..+.++||||..+           +...+......+|++++|+|+..++......     .....+.++.++|++|..
T Consensus       102 ~~~~~~liDtPG~~~-----------f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~  170 (632)
T PRK05506        102 PKRKFIVADTPGHEQ-----------YTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLV  170 (632)
T ss_pred             CCceEEEEECCChHH-----------HHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccc
Confidence            677888999999532           2222223446889999999998666554322     111222222333443311


Q ss_pred             ------H----HHHHhhc---c----chhhhhhhhHhhHHHHH
Q 038053          146 ------A----TELRDQQ---A----EVDSLKEYSKQEISKLM  171 (231)
Q Consensus       146 ------~----~~l~~~~---~----~i~~is~~~~~~i~~l~  171 (231)
                            .    .++...+   .    +++++|+++|.|+....
T Consensus       171 ~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~~~  213 (632)
T PRK05506        171 DYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVTRS  213 (632)
T ss_pred             cchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccccc
Confidence                  0    1222111   1    47789999999987543

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=98.93  E-value=1.2e-09  Score=87.71  Aligned_cols=71  Identities=18%  Similarity=0.268  Sum_probs=47.5

Q ss_pred             cCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEEeeCCcEEEEEeCCC
Q 038053           10 IDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTVLKDGQVVNVIDTPG   82 (231)
Q Consensus        10 ~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~Dtpg   82 (231)
                      +++++++++++|  .+++|+|+||+|||||+++|+|...+...+..|.+....... ..........++++.|.
T Consensus         1 ~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~   72 (230)
T TIGR02770         1 LVQDLNLSLKRG--EVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPR   72 (230)
T ss_pred             CccceeEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCch
Confidence            578999999999  999999999999999999999998731001233333222110 01111235677888874

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.93  E-value=2.8e-09  Score=89.61  Aligned_cols=61  Identities=30%  Similarity=0.393  Sum_probs=47.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAG   89 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~   89 (231)
                      .++++||.||+|||||||+|+|.....++ ..||+|...+...    -...++++||||+......
T Consensus       133 ~~v~vvG~PNVGKSslIN~L~~k~~~~~s-~~PG~Tk~~q~i~----~~~~i~LlDtPGii~~~~~  193 (322)
T COG1161         133 IRVGVVGYPNVGKSTLINRLLGKKVAKTS-NRPGTTKGIQWIK----LDDGIYLLDTPGIIPPKFD  193 (322)
T ss_pred             eEEEEEcCCCCcHHHHHHHHhcccceeeC-CCCceecceEEEE----cCCCeEEecCCCcCCCCcc
Confidence            68999999999999999999999886664 5677776544332    3444789999998765433

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=98.93  E-value=7.9e-10  Score=98.59  Aligned_cols=45  Identities=13%  Similarity=0.118  Sum_probs=40.6

Q ss_pred             CCCC---CCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053            2 SSGM---GERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus         2 ~~~~---~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      ++.|   ++..++++++|++.+|  .+++|+|+||||||||+++|+|...
T Consensus       264 ~~~~~~~~~~~~l~~is~~i~~G--e~~~l~G~NGsGKSTLl~~l~G~~~  311 (500)
T TIGR02633       264 TCWDVINPHRKRVDDVSFSLRRG--EILGVAGLVGAGRTELVQALFGAYP  311 (500)
T ss_pred             cccccccccccccccceeEEeCC--cEEEEeCCCCCCHHHHHHHHhCCCC
Confidence            4566   3467999999999999  9999999999999999999999986

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=98.93  E-value=1.5e-09  Score=83.46  Aligned_cols=136  Identities=13%  Similarity=0.098  Sum_probs=79.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      ..+|+++|..||||||+++.|.........|     |.......... .+..+.+.|.+|-....           ..-.
T Consensus        14 ~~~ililGl~~sGKTtll~~l~~~~~~~~~p-----T~g~~~~~i~~-~~~~~~~~d~gG~~~~~-----------~~w~   76 (175)
T PF00025_consen   14 EIKILILGLDGSGKTTLLNRLKNGEISETIP-----TIGFNIEEIKY-KGYSLTIWDLGGQESFR-----------PLWK   76 (175)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHSSSEEEEEE-----ESSEEEEEEEE-TTEEEEEEEESSSGGGG-----------GGGG
T ss_pred             EEEEEEECCCccchHHHHHHhhhccccccCc-----ccccccceeee-CcEEEEEEecccccccc-----------ccce
Confidence            3799999999999999999998765422212     22223333334 77888999999854311           1112


Q ss_pred             hhcCCccEEEEEEECCCCCCHHHHH----------hcCCCCcHHHHHHHHHhhH----HHHHhhcc----------chhh
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEEEA----------ANGGQPYTDEFLAELKRGA----TELRDQQA----------EVDS  158 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~----~~l~~~~~----------~i~~  158 (231)
                      ..+..+|++++|+|.++.-...+..          .....|+. .++++.+...    .++.+.+.          .+..
T Consensus        77 ~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piL-Il~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~  155 (175)
T PF00025_consen   77 SYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPIL-ILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFS  155 (175)
T ss_dssp             GGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEE-EEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEE
T ss_pred             eeccccceeEEEEecccceeecccccchhhhcchhhcccceEE-EEeccccccCcchhhHHHhhhhhhhcccCCceEEEe
Confidence            3346789999999998432211111          12233333 3333322111    12222111          4666


Q ss_pred             hhhhhHhhHHHHHHHHHH
Q 038053          159 LKEYSKQEISKLMGQMQE  176 (231)
Q Consensus       159 is~~~~~~i~~l~~~i~~  176 (231)
                      .|+.+|+|+.+.++-+.+
T Consensus       156 ~sa~~g~Gv~e~l~WL~~  173 (175)
T PF00025_consen  156 CSAKTGEGVDEGLEWLIE  173 (175)
T ss_dssp             EBTTTTBTHHHHHHHHHH
T ss_pred             eeccCCcCHHHHHHHHHh
Confidence            899999999887766554

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=98.93  E-value=1.2e-09  Score=96.51  Aligned_cols=137  Identities=11%  Similarity=0.094  Sum_probs=80.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCccccc--------------cC-----------------CCCcceeeeeeeEEeeC
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKAFKAS--------------AD-----------------SSGVTKTCEMKTTVLKD   71 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~--------------~~-----------------~~~~t~~~~~~~~~~~~   71 (231)
                      ..+|+++|+.|+|||||++.|+........              ..                 ..+.|.+.......+ .
T Consensus        27 ~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~-~  105 (474)
T PRK05124         27 LLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST-E  105 (474)
T ss_pred             ceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc-C
Confidence            479999999999999999999866432211              00                 123444444444444 5


Q ss_pred             CcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhh-
Q 038053           72 GQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRG-  145 (231)
Q Consensus        72 ~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-  145 (231)
                      +..+.++||||..+           +..........+|++++|+|+..++......     .....+.++.++|++|.. 
T Consensus       106 ~~~i~~iDTPGh~~-----------f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~  174 (474)
T PRK05124        106 KRKFIIADTPGHEQ-----------YTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVD  174 (474)
T ss_pred             CcEEEEEECCCcHH-----------HHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeecccc
Confidence            67889999999322           2222223347889999999998766543322     111122222333443311 


Q ss_pred             -----H----HHHHh---h---c--cchhhhhhhhHhhHHHHH
Q 038053          146 -----A----TELRD---Q---Q--AEVDSLKEYSKQEISKLM  171 (231)
Q Consensus       146 -----~----~~l~~---~---~--~~i~~is~~~~~~i~~l~  171 (231)
                           .    .++..   .   .  .+++++|+++|.|+..+.
T Consensus       175 ~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~  217 (474)
T PRK05124        175 YSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS  217 (474)
T ss_pred             chhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence                 0    12221   1   1  257889999999998654

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.93  E-value=4e-08  Score=80.92  Aligned_cols=89  Identities=20%  Similarity=0.175  Sum_probs=70.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEee----------------CCcEEEEEeCCCCcCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLK----------------DGQVVNVIDTPGLFDSS   87 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~----------------~~~~~~l~Dtpg~~~~~   87 (231)
                      ..+||||.||+|||||||+|+......  .+.|.+|.++....+...                ....+.+.|.+|+-.+.
T Consensus        21 lkiGIVGlPNvGKST~fnalT~~~a~~--~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA   98 (391)
T KOG1491|consen   21 LKIGIVGLPNVGKSTFFNALTKSKAGA--ANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA   98 (391)
T ss_pred             ceeeEeeCCCCchHHHHHHHhcCCCCc--cCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence            799999999999999999999987652  367778877665543321                12357789999999999


Q ss_pred             CCchHHHHHHHHHHhhhcCCccEEEEEEECC
Q 038053           88 AGSEFVGKEIVKRIGLAKGGIHAVLVVFSVR  118 (231)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~  118 (231)
                      +..+.++..++..+...    |.++.||++.
T Consensus        99 s~G~GLGN~FLs~iR~v----DaifhVVr~f  125 (391)
T KOG1491|consen   99 SAGEGLGNKFLSHIRHV----DAIFHVVRAF  125 (391)
T ss_pred             ccCcCchHHHHHhhhhc----cceeEEEEec
Confidence            99999999998877554    8999999875

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=98.93  E-value=8.9e-09  Score=89.40  Aligned_cols=135  Identities=12%  Similarity=0.091  Sum_probs=79.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccc--------------c-----------------CCCCcceeeeeeeEEeeCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKAS--------------A-----------------DSSGVTKTCEMKTTVLKDG   72 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~--------------~-----------------~~~~~t~~~~~~~~~~~~~   72 (231)
                      .+|+++|+.|+|||||++.|+........              .                 ...+.|.+.......+ .+
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~-~~   79 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFST-DK   79 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEcc-CC
Confidence            37999999999999999999754322110              0                 0123445554444555 67


Q ss_pred             cEEEEEeCCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhh--
Q 038053           73 QVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRG--  145 (231)
Q Consensus        73 ~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~--  145 (231)
                      ..+.++||||..+           +...+...+..+|.+++|+|+..++......     .....+.++.++|++|..  
T Consensus        80 ~~~~liDtPGh~~-----------f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~  148 (406)
T TIGR02034        80 RKFIVADTPGHEQ-----------YTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDY  148 (406)
T ss_pred             eEEEEEeCCCHHH-----------HHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccc
Confidence            7889999999432           2222223456889999999998777655432     111222222233333311  


Q ss_pred             -H-------HHHHhh---cc----chhhhhhhhHhhHHHH
Q 038053          146 -A-------TELRDQ---QA----EVDSLKEYSKQEISKL  170 (231)
Q Consensus       146 -~-------~~l~~~---~~----~i~~is~~~~~~i~~l  170 (231)
                       .       +.+...   ..    +++++|+.+|.|+...
T Consensus       149 ~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~  188 (406)
T TIGR02034       149 DEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVSR  188 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCccc
Confidence             0       122211   11    5778999999998754

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.92  E-value=5.4e-10  Score=92.72  Aligned_cols=67  Identities=21%  Similarity=0.085  Sum_probs=48.9

Q ss_pred             ccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-------EEeeCCcEEEEEeCC
Q 038053            9 VIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-------TVLKDGQVVNVIDTP   81 (231)
Q Consensus         9 ~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-------~~~~~~~~~~l~Dtp   81 (231)
                      .++++++|++.+|  .+++|+|+||+|||||+++|+|...+    ..|.++.+.....       ........+++++.|
T Consensus        20 ~~l~~vsl~i~~G--e~v~i~G~nGsGKSTLl~~l~Gl~~p----~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~   93 (288)
T PRK13643         20 RALFDIDLEVKKG--SYTALIGHTGSGKSTLLQHLNGLLQP----TEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFP   93 (288)
T ss_pred             cceeeeEEEEcCC--CEEEEECCCCChHHHHHHHHhcCCCC----CCcEEEECCEECccccccccHHHHHhhEEEEecCc
Confidence            5999999999999  99999999999999999999999873    4444433322110       000123567788877

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=98.92  E-value=1.1e-09  Score=97.86  Aligned_cols=46  Identities=11%  Similarity=0.091  Sum_probs=41.0

Q ss_pred             CCCCC---CCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053            1 MSSGM---GERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus         1 ~~~~~---~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      +++.|   ++..++++++|++++|  .+++|+|+||||||||+++|+|...
T Consensus       265 l~~~~~~~~~~~vl~~vsl~i~~G--e~~~l~G~NGsGKSTLlk~i~Gl~~  313 (506)
T PRK13549        265 LTAWDPVNPHIKRVDDVSFSLRRG--EILGIAGLVGAGRTELVQCLFGAYP  313 (506)
T ss_pred             CccccccccccccccceeeEEcCC--cEEEEeCCCCCCHHHHHHHHhCCCC
Confidence            35666   3467999999999999  9999999999999999999999975

>PRK04004 translation initiation factor IF-2; Validated

Probab=98.92  E-value=3.9e-08  Score=88.87  Aligned_cols=90  Identities=19%  Similarity=0.230  Sum_probs=54.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEee----------C-------CcEEEEEeCCCCcCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLK----------D-------GQVVNVIDTPGLFDS   86 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~----------~-------~~~~~l~Dtpg~~~~   86 (231)
                      +.|+++|++|+|||||+|.|.|......  ..++.|...........          .       -..+.++||||....
T Consensus         7 p~V~i~Gh~~~GKTSLl~~l~~~~v~~~--~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f   84 (586)
T PRK04004          7 PIVVVLGHVDHGKTTLLDKIRGTAVAAK--EAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF   84 (586)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcccccC--CCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence            6899999999999999999998754221  22333322111100000          0       012679999996531


Q ss_pred             CCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHH
Q 038053           87 SAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEE  126 (231)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~  126 (231)
                                 ..........+|++++|+|+++++.....
T Consensus        85 -----------~~~~~~~~~~aD~~IlVvDa~~g~~~qt~  113 (586)
T PRK04004         85 -----------TNLRKRGGALADIAILVVDINEGFQPQTI  113 (586)
T ss_pred             -----------HHHHHHhHhhCCEEEEEEECCCCCCHhHH
Confidence                       11122234678999999999876655543

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=98.92  E-value=6.6e-10  Score=88.94  Aligned_cols=46  Identities=17%  Similarity=0.114  Sum_probs=40.6

Q ss_pred             CCCCCC---cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053            2 SSGMGE---RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF   49 (231)
Q Consensus         2 ~~~~~~---~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~   49 (231)
                      ++.|++   ..+++++++++++|  .+++|+|+||+|||||+++|+|...+
T Consensus        18 ~~~~~~~~~~~~l~~is~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~   66 (226)
T cd03248          18 TFAYPTRPDTLVLQDVSFTLHPG--EVTALVGPSGSGKSTVVALLENFYQP   66 (226)
T ss_pred             EEEeCCCCCCccccceEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCcCC
Confidence            445653   46999999999999  99999999999999999999999874

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.92  E-value=2.9e-09  Score=84.29  Aligned_cols=96  Identities=20%  Similarity=0.291  Sum_probs=68.4

Q ss_pred             cCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHH
Q 038053           16 PTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGK   95 (231)
Q Consensus        16 ~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~   95 (231)
                      |.+.+.+.-+|+|||.|.+|||||+..|++.....  .+...+|..+..+.... ++..+.+.|.||+..+.+.....+.
T Consensus        55 FeV~KsGdaRValIGfPSVGKStlLs~iT~T~Sea--A~yeFTTLtcIpGvi~y-~ga~IQllDLPGIieGAsqgkGRGR  131 (364)
T KOG1486|consen   55 FEVLKSGDARVALIGFPSVGKSTLLSKITSTHSEA--ASYEFTTLTCIPGVIHY-NGANIQLLDLPGIIEGASQGKGRGR  131 (364)
T ss_pred             eeeeccCCeEEEEecCCCccHHHHHHHhhcchhhh--hceeeeEEEeecceEEe-cCceEEEecCcccccccccCCCCCc
Confidence            34443345799999999999999999999876432  23444455555555555 8889999999999987665544444


Q ss_pred             HHHHHHhhhcCCccEEEEEEECC
Q 038053           96 EIVKRIGLAKGGIHAVLVVFSVR  118 (231)
Q Consensus        96 ~~~~~~~~~~~~~~~il~vvd~~  118 (231)
                      ..+    .....+|.++.++|++
T Consensus       132 Qvi----avArtaDlilMvLDat  150 (364)
T KOG1486|consen  132 QVI----AVARTADLILMVLDAT  150 (364)
T ss_pred             eEE----EEeecccEEEEEecCC
Confidence            332    2336789999999997

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.92  E-value=1.2e-08  Score=81.51  Aligned_cols=93  Identities=20%  Similarity=0.146  Sum_probs=57.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCC-CccccccCCCCcceeeeeeeEEee--CCcEEEEEeCCCCcCCCCCchHHHHHHHH
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGR-KAFKASADSSGVTKTCEMKTTVLK--DGQVVNVIDTPGLFDSSAGSEFVGKEIVK   99 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~-~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~   99 (231)
                      ...|+++|++++|||||+|.|+|. ..+..+.....+|...-.......  .+..++++||||+.+..... . ......
T Consensus         7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~-~-~~~~~~   84 (224)
T cd01851           7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGE-F-EDDARL   84 (224)
T ss_pred             EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCc-h-hhhhHH
Confidence            368999999999999999999998 344444445566654333322221  24678999999998754322 0 111111


Q ss_pred             HHhhhcCCccEEEEEEECC
Q 038053          100 RIGLAKGGIHAVLVVFSVR  118 (231)
Q Consensus       100 ~~~~~~~~~~~il~vvd~~  118 (231)
                      +.... .-++++++.++..
T Consensus        85 ~~l~~-llss~~i~n~~~~  102 (224)
T cd01851          85 FALAT-LLSSVLIYNSWET  102 (224)
T ss_pred             HHHHH-HHhCEEEEeccCc
Confidence            11111 1457888887765

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=98.92  E-value=2.6e-09  Score=92.79  Aligned_cols=142  Identities=12%  Similarity=0.152  Sum_probs=79.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccc-cCCCCcceeeeeeeEE--------------e-----------eCCcEEEE
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKAS-ADSSGVTKTCEMKTTV--------------L-----------KDGQVVNV   77 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~-~~~~~~t~~~~~~~~~--------------~-----------~~~~~~~l   77 (231)
                      .+|+++|..|+|||||+++|++....... ...-+.|....+....              .           ..+..+.+
T Consensus         5 ~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l   84 (406)
T TIGR03680         5 VNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRVSF   84 (406)
T ss_pred             EEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEEEE
Confidence            78999999999999999999885321100 0011222211110000              0           01457889


Q ss_pred             EeCCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCC-CHHHHH------hcCCCCcHHHHHHHHHhh-----
Q 038053           78 IDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRF-SQEEEA------ANGGQPYTDEFLAELKRG-----  145 (231)
Q Consensus        78 ~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~-----  145 (231)
                      +||||...           +...+......+|.+++|+|+++++ ..+...      .....+++ .++|++|..     
T Consensus        85 iDtPGh~~-----------f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iI-VvvNK~Dl~~~~~~  152 (406)
T TIGR03680        85 VDAPGHET-----------LMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIV-IVQNKIDLVSKEKA  152 (406)
T ss_pred             EECCCHHH-----------HHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEE-EEEEccccCCHHHH
Confidence            99999532           2222223335779999999998654 332222      11222222 233443310     


Q ss_pred             ---HHHHHhhc-------cchhhhhhhhHhhHHHHHHHHHHH
Q 038053          146 ---ATELRDQQ-------AEVDSLKEYSKQEISKLMGQMQES  177 (231)
Q Consensus       146 ---~~~l~~~~-------~~i~~is~~~~~~i~~l~~~i~~~  177 (231)
                         ..++.+.+       -+++++|+++|.|++.|++.+...
T Consensus       153 ~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~  194 (406)
T TIGR03680       153 LENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKF  194 (406)
T ss_pred             HHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHh
Confidence               01222222       157789999999999888887653

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=98.91  E-value=1.4e-09  Score=79.95  Aligned_cols=132  Identities=17%  Similarity=0.213  Sum_probs=74.4

Q ss_pred             EEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEee---CCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhh
Q 038053           28 LLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLK---DGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLA  104 (231)
Q Consensus        28 lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~  104 (231)
                      ++|++|+|||||+|.|++......   ....|. .........   ....+.++|+||.....           ......
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~---~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-----------~~~~~~   65 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPE---EYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFR-----------SLRRLY   65 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCc---ccccch-hheeeEEEEECCEEEEEEEEecCChHHHH-----------hHHHHH
Confidence            589999999999999999876211   111121 111111111   25678899999976521           111334


Q ss_pred             cCCccEEEEEEECCCCCCHHHHH----------hcCCCCcHHHHHHHHHhhH----HH------HH-hhccchhhhhhhh
Q 038053          105 KGGIHAVLVVFSVRSRFSQEEEA----------ANGGQPYTDEFLAELKRGA----TE------LR-DQQAEVDSLKEYS  163 (231)
Q Consensus       105 ~~~~~~il~vvd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~----~~------l~-~~~~~i~~is~~~  163 (231)
                      ...+|.+++|+|++......+..          .....+++ .++++.+...    ..      .. ....+++.+|+..
T Consensus        66 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-vv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  144 (157)
T cd00882          66 YRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPII-LVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKT  144 (157)
T ss_pred             hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEE-EEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCC
Confidence            47889999999998543333221          22223332 3334433211    00      01 1112677789999


Q ss_pred             HhhHHHHHHHHH
Q 038053          164 KQEISKLMGQMQ  175 (231)
Q Consensus       164 ~~~i~~l~~~i~  175 (231)
                      +.++.+++..+.
T Consensus       145 ~~~i~~~~~~l~  156 (157)
T cd00882         145 GENVEELFEELA  156 (157)
T ss_pred             CCChHHHHHHHh
Confidence            988888877653

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=98.91  E-value=1.1e-09  Score=98.15  Aligned_cols=80  Identities=13%  Similarity=0.072  Sum_probs=55.4

Q ss_pred             cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCccee-ee----eeeEE-----eeCCcEEEE
Q 038053            8 RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKT-CE----MKTTV-----LKDGQVVNV   77 (231)
Q Consensus         8 ~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~-~~----~~~~~-----~~~~~~~~l   77 (231)
                      ..++++++|++.+|  .+++|+|+||||||||+++|+|...+    ..|.+... ..    .....     .......++
T Consensus       297 ~~il~~is~~i~~G--e~~~l~G~NGsGKSTLl~~l~Gl~~p----~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v  370 (520)
T TIGR03269       297 VKAVDNVSLEVKEG--EIFGIVGTSGAGKTTLSKIIAGVLEP----TSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGIL  370 (520)
T ss_pred             ceEEeeEEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CCeEEEEecCCccccccccchhhHHHHhhhEEEE
Confidence            57999999999999  99999999999999999999999863    33333321 10    00000     002346788


Q ss_pred             EeCCCCcCCCCCchHH
Q 038053           78 IDTPGLFDSSAGSEFV   93 (231)
Q Consensus        78 ~Dtpg~~~~~~~~~~~   93 (231)
                      ++.|.+++..++.+.+
T Consensus       371 ~q~~~l~~~~tv~e~l  386 (520)
T TIGR03269       371 HQEYDLYPHRTVLDNL  386 (520)
T ss_pred             ccCcccCCCCcHHHHH
Confidence            8888877755544443

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.90  E-value=9.9e-10  Score=92.70  Aligned_cols=81  Identities=14%  Similarity=0.120  Sum_probs=55.8

Q ss_pred             CCCCC--CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccc-cCCCCcceeeeeee------EEeeCC
Q 038053            2 SSGMG--ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKAS-ADSSGVTKTCEMKT------TVLKDG   72 (231)
Q Consensus         2 ~~~~~--~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~-~~~~~~t~~~~~~~------~~~~~~   72 (231)
                      ++.|.  ..++|++++|++++|  .+++|+|+||||||||+++|+|......+ +..|.+..+.....      ... ..
T Consensus        87 s~~y~~~~~~~L~~is~~I~~G--e~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~l-r~  163 (329)
T PRK14257         87 NFWYMNRTKHVLHDLNLDIKRN--KVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLEL-RT  163 (329)
T ss_pred             EEEecCCCceeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhh-hc
Confidence            34553  457999999999999  99999999999999999999998753110 12333332221110      011 45


Q ss_pred             cEEEEEeCCCCcC
Q 038053           73 QVVNVIDTPGLFD   85 (231)
Q Consensus        73 ~~~~l~Dtpg~~~   85 (231)
                      ...++++.|.++.
T Consensus       164 ~i~~v~q~~~~~~  176 (329)
T PRK14257        164 RIGMVFQKPTPFE  176 (329)
T ss_pred             cEEEEecCCccCC
Confidence            6788899988775

>smart00053 DYNc Dynamin, GTPase

Probab=98.90  E-value=2.6e-08  Score=80.09  Aligned_cols=100  Identities=18%  Similarity=0.225  Sum_probs=59.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee--------------------------------------
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK--------------------------------------   65 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~--------------------------------------   65 (231)
                      +.+++||++|+||||++++|+|......  ..+.+|+.+...                                      
T Consensus        27 p~i~vvG~~~~GKSt~l~~i~g~~~~~~--~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~  104 (240)
T smart00053       27 PQIAVVGGQSAGKSSVLENFVGRDFLPR--GSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT  104 (240)
T ss_pred             CeEEEEcCCCccHHHHHHHHhCCCcccc--CCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhc
Confidence            5899999999999999999999852211  122222111000                                      


Q ss_pred             -------------eEEeeCCcEEEEEeCCCCcCCCCCc--hHHHHHHHHHHhhhcC-CccEEEEEEECCCCCCHHH
Q 038053           66 -------------TTVLKDGQVVNVIDTPGLFDSSAGS--EFVGKEIVKRIGLAKG-GIHAVLVVFSVRSRFSQEE  125 (231)
Q Consensus        66 -------------~~~~~~~~~~~l~Dtpg~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~il~vvd~~~~~~~~~  125 (231)
                                   ....+....+.++||||+.......  ......+...+...+. ..+.+++|+++..++...+
T Consensus       105 ~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d  180 (240)
T smart00053      105 GTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSD  180 (240)
T ss_pred             CCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchh
Confidence                         0000112568899999997532111  2333444444444445 4458999999876666544

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=98.90  E-value=1.5e-09  Score=91.57  Aligned_cols=75  Identities=15%  Similarity=0.070  Sum_probs=52.2

Q ss_pred             cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eE-----EeeCCcEEEEEeCC
Q 038053            8 RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TT-----VLKDGQVVNVIDTP   81 (231)
Q Consensus         8 ~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~-----~~~~~~~~~l~Dtp   81 (231)
                      ..++++++|++.+|  .+++|+|+||||||||+++|+|...+    ..|.+....... ..     ........++++.|
T Consensus        28 ~~~l~~vsl~i~~G--e~~~IvG~sGsGKSTLl~~l~gl~~p----~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~  101 (327)
T PRK11308         28 VKALDGVSFTLERG--KTLAVVGESGCGKSTLARLLTMIETP----TGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNP  101 (327)
T ss_pred             eeEEeeeEEEECCC--CEEEEECCCCCcHHHHHHHHHcCCCC----CCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCc
Confidence            57899999999999  99999999999999999999999863    333333322110 00     00134577888887


Q ss_pred             C--CcCCCC
Q 038053           82 G--LFDSSA   88 (231)
Q Consensus        82 g--~~~~~~   88 (231)
                      .  +.+..+
T Consensus       102 ~~~l~p~~~  110 (327)
T PRK11308        102 YGSLNPRKK  110 (327)
T ss_pred             hhhcCCccC
Confidence            3  444333

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=98.90  E-value=9.4e-10  Score=84.54  Aligned_cols=37  Identities=27%  Similarity=0.148  Sum_probs=34.6

Q ss_pred             CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhC
Q 038053            7 ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILG   45 (231)
Q Consensus         7 ~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g   45 (231)
                      ..++|++++|++++|  .+++|+|+||||||||+|+|++
T Consensus         7 ~~~~l~~isl~i~~G--~~~~l~G~nG~GKSTLl~~il~   43 (176)
T cd03238           7 NVHNLQNLDVSIPLN--VLVVVTGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             eeeeecceEEEEcCC--CEEEEECCCCCCHHHHHHHHhh
Confidence            467899999999999  9999999999999999999974

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=98.90  E-value=1.6e-09  Score=88.21  Aligned_cols=47  Identities=17%  Similarity=0.161  Sum_probs=41.1

Q ss_pred             CCCCCCCc-ccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccc
Q 038053            1 MSSGMGER-VIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFK   50 (231)
Q Consensus         1 ~~~~~~~~-~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~   50 (231)
                      ++++|+.. .++++++ .+.+|  .+++|+|+||||||||+++|+|...+.
T Consensus         6 ~~~~y~~~~~~l~~i~-~i~~G--e~~~IvG~nGsGKSTLlk~l~Gl~~p~   53 (255)
T cd03236           6 PVHRYGPNSFKLHRLP-VPREG--QVLGLVGPNGIGKSTALKILAGKLKPN   53 (255)
T ss_pred             cceeecCcchhhhcCC-CCCCC--CEEEEECCCCCCHHHHHHHHhCCcCCC
Confidence            46788765 5899999 59999  999999999999999999999998743

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=98.90  E-value=8.4e-11  Score=89.81  Aligned_cols=88  Identities=17%  Similarity=0.205  Sum_probs=63.0

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeee-----eeEEeeCCcEE
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEM-----KTTVLKDGQVV   75 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~-----~~~~~~~~~~~   75 (231)
                      ++..||+=.++++++|++.+|  ..=+||||||+||||+|..|+|+..+..|    .+-.+...     ..........+
T Consensus        11 vsVsF~GF~Aln~ls~~v~~G--elr~lIGpNGAGKTT~mD~ItGKtrp~~G----~v~f~g~~dl~~~~e~~IAr~GIG   84 (249)
T COG4674          11 VSVSFGGFKALNDLSFSVDPG--ELRVLIGPNGAGKTTLMDVITGKTRPQEG----EVLFDGDTDLTKLPEHRIARAGIG   84 (249)
T ss_pred             eEEEEcceeeeeeeEEEecCC--eEEEEECCCCCCceeeeeeecccCCCCcc----eEEEcCchhhccCCHHHHHHhccC
Confidence            356789999999999999999  89999999999999999999999884332    21111100     00011122344


Q ss_pred             EEEeCCCCcCCCCCchHHH
Q 038053           76 NVIDTPGLFDSSAGSEFVG   94 (231)
Q Consensus        76 ~l~Dtpg~~~~~~~~~~~~   94 (231)
                      .=+++|..|+..++.+++.
T Consensus        85 RKFQ~PtVfe~ltV~eNLe  103 (249)
T COG4674          85 RKFQKPTVFENLTVRENLE  103 (249)
T ss_pred             ccccCCeehhhccHHHHHH
Confidence            5689999999888777664

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=98.89  E-value=1.1e-09  Score=99.91  Aligned_cols=46  Identities=15%  Similarity=0.189  Sum_probs=40.7

Q ss_pred             CCCCC----CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053            2 SSGMG----ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF   49 (231)
Q Consensus         2 ~~~~~----~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~   49 (231)
                      ++.|+    ...++++++|++.+|  .+++|+|+||||||||+++|+|...+
T Consensus        19 ~~~y~~~~~~~~~l~~is~~v~~G--e~~~lvG~nGsGKSTLl~~l~Gll~p   68 (623)
T PRK10261         19 NIAFMQEQQKIAAVRNLSFSLQRG--ETLAIVGESGSGKSVTALALMRLLEQ   68 (623)
T ss_pred             EEEecCCCCceeEEEeeEEEECCC--CEEEEECCCCChHHHHHHHHHcCCCC
Confidence            45564    347999999999999  99999999999999999999999864

>PRK12289 GTPase RsgA; Reviewed

Probab=98.89  E-value=2.4e-09  Score=90.75  Aligned_cols=60  Identities=23%  Similarity=0.303  Sum_probs=40.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCC-----C-cceeeeeeeEEeeCCcEEEEEeCCCCcCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSS-----G-VTKTCEMKTTVLKDGQVVNVIDTPGLFDSS   87 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~-----~-~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~   87 (231)
                      ..++|+|+||+|||||||.|++.....++...+     - +|+.......   . ..++++||||+....
T Consensus       173 ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l---~-~g~~liDTPG~~~~~  238 (352)
T PRK12289        173 KITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFEL---P-NGGLLADTPGFNQPD  238 (352)
T ss_pred             ceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEEC---C-CCcEEEeCCCccccc
Confidence            478999999999999999999987654432111     1 3444333222   1 224899999997543

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=98.89  E-value=2.7e-08  Score=73.68  Aligned_cols=82  Identities=18%  Similarity=0.222  Sum_probs=59.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|.++|..||||||+++.+.|....     .-..|...+...... ++..+.+.|..|.-.           +..+-..
T Consensus        17 ~riLiLGLdNsGKTti~~kl~~~~~~-----~i~pt~gf~Iktl~~-~~~~L~iwDvGGq~~-----------lr~~W~n   79 (185)
T KOG0073|consen   17 VRILILGLDNSGKTTIVKKLLGEDTD-----TISPTLGFQIKTLEY-KGYTLNIWDVGGQKT-----------LRSYWKN   79 (185)
T ss_pred             eEEEEEecCCCCchhHHHHhcCCCcc-----ccCCccceeeEEEEe-cceEEEEEEcCCcch-----------hHHHHHH
Confidence            79999999999999999999999863     233355455555555 788888999888443           2233333


Q ss_pred             hcCCccEEEEEEECCCCCC
Q 038053          104 AKGGIHAVLVVFSVRSRFS  122 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~  122 (231)
                      .++..|++++|+|.+++-.
T Consensus        80 YfestdglIwvvDssD~~r   98 (185)
T KOG0073|consen   80 YFESTDGLIWVVDSSDRMR   98 (185)
T ss_pred             hhhccCeEEEEEECchHHH
Confidence            4467799999999985433

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=98.89  E-value=1.5e-09  Score=95.68  Aligned_cols=40  Identities=23%  Similarity=0.219  Sum_probs=37.5

Q ss_pred             cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053            8 RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF   49 (231)
Q Consensus         8 ~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~   49 (231)
                      +++|++++|++.+|  .+++|+|+||+|||||+++|+|...+
T Consensus        37 ~~IL~nVSfsI~~G--EivgIiGpNGSGKSTLLkiLaGLl~P   76 (549)
T PRK13545         37 HYALNNISFEVPEG--EIVGIIGLNGSGKSTLSNLIAGVTMP   76 (549)
T ss_pred             ceEEeeeEEEEeCC--CEEEEEcCCCCCHHHHHHHHhCCCCC
Confidence            46899999999999  99999999999999999999999873

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=98.89  E-value=8.8e-10  Score=96.61  Aligned_cols=78  Identities=23%  Similarity=0.210  Sum_probs=55.8

Q ss_pred             CCCCCCc-ccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeee----eeeEEeeCCcEEE
Q 038053            2 SSGMGER-VIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCE----MKTTVLKDGQVVN   76 (231)
Q Consensus         2 ~~~~~~~-~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~----~~~~~~~~~~~~~   76 (231)
                      +..|.+. +++.++++++++|  ..++|||+||||||||+|.|+|...+    ..|..+....    .....| .+...+
T Consensus       327 ~~~y~~g~~~l~~l~~t~~~g--~~talvG~SGaGKSTLl~lL~G~~~~----~~G~I~vng~~l~~l~~~~~-~k~i~~  399 (559)
T COG4988         327 SFRYPDGKPALSDLNLTIKAG--QLTALVGASGAGKSTLLNLLLGFLAP----TQGEIRVNGIDLRDLSPEAW-RKQISW  399 (559)
T ss_pred             EEecCCCCcccCCceeEecCC--cEEEEECCCCCCHHHHHHHHhCcCCC----CCceEEECCccccccCHHHH-HhHeee
Confidence            3445443 8999999999999  99999999999999999999999884    3333333211    111122 456677


Q ss_pred             EEeCCCCcCC
Q 038053           77 VIDTPGLFDS   86 (231)
Q Consensus        77 l~Dtpg~~~~   86 (231)
                      +.|.|-+++.
T Consensus       400 v~Q~p~lf~g  409 (559)
T COG4988         400 VSQNPYLFAG  409 (559)
T ss_pred             eCCCCccccc
Confidence            8888877763

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=98.89  E-value=3.4e-09  Score=75.00  Aligned_cols=131  Identities=15%  Similarity=0.189  Sum_probs=80.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .++++||+.|||||||++.|-|....-.      -|..     +++ +..  ..|||||-|-.       .......+..
T Consensus         2 Kri~~vG~~gcGKTtL~q~L~G~~~lyk------KTQA-----ve~-~d~--~~IDTPGEy~~-------~~~~Y~aL~t   60 (148)
T COG4917           2 KRIAFVGQVGCGKTTLFQSLYGNDTLYK------KTQA-----VEF-NDK--GDIDTPGEYFE-------HPRWYHALIT   60 (148)
T ss_pred             ceeEEecccccCchhHHHHhhcchhhhc------ccce-----eec-cCc--cccCCchhhhh-------hhHHHHHHHH
Confidence            5799999999999999999999875211      1111     111 111  26999997641       2233344555


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHHh--cCCCCcHHHHHHHHHh------hH--HHHHhh-ccchhhhhhhhHhhHHHHHH
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEAA--NGGQPYTDEFLAELKR------GA--TELRDQ-QAEVDSLKEYSKQEISKLMG  172 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~------~~--~~l~~~-~~~i~~is~~~~~~i~~l~~  172 (231)
                      ....+|++++|..+.+.++.....+  ...++. +-++++.+.      ..  +-|.+. ..+|+.+|+....|+++|++
T Consensus        61 t~~dadvi~~v~~and~~s~f~p~f~~~~~k~v-IgvVTK~DLaed~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~  139 (148)
T COG4917          61 TLQDADVIIYVHAANDPESRFPPGFLDIGVKKV-IGVVTKADLAEDADISLVKRWLREAGAEPIFETSAVDNQGVEELVD  139 (148)
T ss_pred             HhhccceeeeeecccCccccCCcccccccccce-EEEEecccccchHhHHHHHHHHHHcCCcceEEEeccCcccHHHHHH
Confidence            5678899999999887665554331  122222 222233221      11  122221 23899999999999999888


Q ss_pred             HHHH
Q 038053          173 QMQE  176 (231)
Q Consensus       173 ~i~~  176 (231)
                      .+..
T Consensus       140 ~L~~  143 (148)
T COG4917         140 YLAS  143 (148)
T ss_pred             HHHh
Confidence            7654

>PRK00098 GTPase RsgA; Reviewed

Probab=98.89  E-value=7e-09  Score=86.41  Aligned_cols=58  Identities=28%  Similarity=0.295  Sum_probs=39.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccC-----CCC-cceeeeeeeEEeeCCcEEEEEeCCCCcC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASAD-----SSG-VTKTCEMKTTVLKDGQVVNVIDTPGLFD   85 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~-----~~~-~t~~~~~~~~~~~~~~~~~l~Dtpg~~~   85 (231)
                      ..++|+|+||+|||||+|+|+|......+..     .|. +|+......    ....++++||||+..
T Consensus       165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~----~~~~~~~~DtpG~~~  228 (298)
T PRK00098        165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYD----LPGGGLLIDTPGFSS  228 (298)
T ss_pred             ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEE----cCCCcEEEECCCcCc
Confidence            7899999999999999999999876544311     111 333222221    123458999999984

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=98.89  E-value=1.8e-09  Score=98.60  Aligned_cols=79  Identities=16%  Similarity=0.125  Sum_probs=54.5

Q ss_pred             cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eE-----EeeCCcEEEEEeCC
Q 038053            8 RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TT-----VLKDGQVVNVIDTP   81 (231)
Q Consensus         8 ~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~-----~~~~~~~~~l~Dtp   81 (231)
                      ..++++++|++.+|  .+++|+|+||||||||+++|+|...+    ..|.+....... ..     ........++++.|
T Consensus       337 ~~~l~~vs~~i~~G--e~~~lvG~nGsGKSTLlk~i~Gl~~p----~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~  410 (623)
T PRK10261        337 VHAVEKVSFDLWPG--ETLSLVGESGSGKSTTGRALLRLVES----QGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDP  410 (623)
T ss_pred             eEEEeeeEeEEcCC--CEEEEECCCCCCHHHHHHHHHcCCCC----CCcEEEECCEECCcCCHHHHHHhcCCeEEEecCc
Confidence            46899999999999  99999999999999999999999873    334333322110 00     00023567788887


Q ss_pred             --CCcCCCCCchH
Q 038053           82 --GLFDSSAGSEF   92 (231)
Q Consensus        82 --g~~~~~~~~~~   92 (231)
                        .+++..++.+.
T Consensus       411 ~~~l~~~~tv~~~  423 (623)
T PRK10261        411 YASLDPRQTVGDS  423 (623)
T ss_pred             hhhcCCCCCHHHH
Confidence              46655554443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	231
3lxx_A	239	Crystal Structure Of Human Gtpase Imap Family Membe		1e-17
2xtm_A	234	Crystal Structure Of Gdp-Bound Human Gimap2, Amino		1e-11
2xto_A	240	Crystal Structure Of Gdp-Bound Human Gimap2, Amino		3e-11
2xtp_A	260	Crystal Structure Of Nucleotide-Free Human Gimap2,		4e-11
3p1j_A	209	Crystal Structure Of Human Gtpase Imap Family Membe		4e-11
3v70_A	247	Crystal Structure Of Human Gtpase Imap Family Membe		3e-09
3bb4_A	262	Crystal Structure Of Toc33 From Arabidopsis Thalian		6e-04
3def_A	262	Crystal Structure Of Toc33 From Arabidopsis Thalian		6e-04
3bb3_A	262	Crystal Structure Of Toc33 From Arabidopsis Thalian		6e-04
2j3e_A	249	Dimerization Is Important For The Gtpase Activity O		7e-04

>pdb|3LXX|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 4 Length = 239

Iteration: 1
 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 42/92 (45%), Positives = 62/92 (67%), Gaps = 1/92 (1%)
Query: 21  NGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDT 80
           N +  +VL+G+TG GKSATGNSILGRK F +   +  +TK CE +++  K+ ++V V+DT
Sbjct: 27  NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELV-VVDT 85
Query: 81  PGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVL 112
           PG+FD+   +    KEI++ I L   G HA+L
Sbjct: 86  PGIFDTEVPNAETSKEIIRCILLTSPGPHALL 117

>pdb|2XTM|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid Residues 1-234 Length = 234

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 5/119 (4%)
Query: 14  WKPTS----SSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVL 69
           W P +    +S  +  ++L+G+TG GKSA GNSIL ++AF++   S  +TKTC       
Sbjct: 9   WGPHAKGQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW 68
Query: 70  KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLXXXXXXXXXXQEEEAA 128
            + ++V +IDTP +F      E + KE+ +   L+  G H +L          Q+++AA
Sbjct: 69  GNREIV-IIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAA 126

>pdb|2XTO|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid Residues 21-260 Length = 240

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 58/103 (56%), Gaps = 1/103 (0%)
Query: 26  VVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 85
           ++L+G+TG GKSA GNSIL ++AF++   S  +TKTC        + ++V +IDTP +F 
Sbjct: 5   IILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IIDTPDMFS 63
Query: 86  SSAGSEFVGKEIVKRIGLAKGGIHAVLXXXXXXXXXXQEEEAA 128
                E + KE+ +   L+  G H +L          Q+++AA
Sbjct: 64  WKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAA 106

>pdb|2XTP|A Chain A, Crystal Structure Of Nucleotide-Free Human Gimap2, Amino Acid Residues 1-260 Length = 260

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 63/119 (52%), Gaps = 5/119 (4%)
Query: 14  WKPTS----SSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVL 69
           W P +    +S  +  ++L+G+TG GKSA GNSIL ++AF++   S  +TKTC       
Sbjct: 9   WGPHAKGQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW 68
Query: 70  KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLXXXXXXXXXXQEEEAA 128
            + ++V +IDTP  F      E + KE+ +   L+  G H +L          Q+++AA
Sbjct: 69  GNREIV-IIDTPDXFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAA 126

>pdb|3P1J|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 2 In The Nucleotide-Free State Length = 209

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 58/103 (56%), Gaps = 1/103 (0%)
Query: 26  VVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 85
           ++L+G+TG GKSA GNSIL ++AF++   S  +TKTC        + ++V +IDTP +F 
Sbjct: 8   IILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIV-IIDTPDMFS 66
Query: 86  SSAGSEFVGKEIVKRIGLAKGGIHAVLXXXXXXXXXXQEEEAA 128
                E + KE+ +   L+  G H +L          Q+++AA
Sbjct: 67  WKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAA 109

>pdb|3V70|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 1 Length = 247

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 57/109 (52%), Gaps = 10/109 (9%)
Query: 24  RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 83
           R ++L+GRTG GKSATGNSILG++ F +   ++ VT+ C   +    D   V V+DTP +
Sbjct: 22  RRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRW-DKCHVEVVDTPDI 80
Query: 84  FDS-----SAGSEFVGKEIVKRIGLAKGGIHAVLXXXXXXXXXXQEEEA 127
           F S       G E  G   +    L+  G HA+L          Q+++A
Sbjct: 81  FSSQVSKTDPGCEERGHCYL----LSAPGPHALLLVTQLGRFTAQDQQA 125

>pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In Complex With Mg2+ And Gmppnp Length = 262

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 84
          TV++LG+ G GKS+T NS++G +  + S   +   +   +  T+   G  +N+IDTPGL 
Sbjct: 38 TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLV 95
Query: 85 DS 86
          ++
Sbjct: 96 EA 97

>pdb|3DEF|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana, Dimerization Deficient Mutant R130a Length = 262

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 84
          TV++LG+ G GKS+T NS++G +  + S   +   +   +  T+   G  +N+IDTPGL 
Sbjct: 38 TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLV 95
Query: 85 DS 86
          ++
Sbjct: 96 EA 97

>pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In Complex With Gdp And Mg2+ Length = 262

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 84
          TV++LG+ G GKS+T NS++G +  + S   +   +   +  T+   G  +N+IDTPGL 
Sbjct: 38 TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLV 95
Query: 85 DS 86
          ++
Sbjct: 96 EA 97

>pdb|2J3E|A Chain A, Dimerization Is Important For The Gtpase Activity Of Chloroplast Translocon Components Attoc33 And Pstoc159 Length = 249

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 84
          TV++LG+ G GKS+T NS++G +  + S   +   +   +  T+   G  +N+IDTPGL 
Sbjct: 37 TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTM--GGFTINIIDTPGLV 94
Query: 85 DS 86
          ++
Sbjct: 95 EA 96

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	231
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	9e-30
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	4e-29
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	5e-29
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	2e-25
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	4e-24
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	6e-06

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262

 Score =  110 bits (277), Expect = 9e-30
 Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 3/122 (2%)

Query: 7   ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT 66
           E++I+   K         TV++LG+ G GKS+T NS++G +  + S           M +
Sbjct: 20  EKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVS-PFQAEGLRPVMVS 78

Query: 67  TVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEE 126
             +  G  +N+IDTPGL ++   +    + I   +      +   +    V     + ++
Sbjct: 79  RTM-GGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVY-AVDELDK 136

Query: 127 AA 128
             
Sbjct: 137 QV 138

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} Length = 239

 Score =  108 bits (271), Expect = 4e-29
 Identities = 49/127 (38%), Positives = 72/127 (56%), Gaps = 2/127 (1%)

Query: 2   SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKT 61
           SSG       G        N +  +VL+G+TG GKSATGNSILGRK F +   +  +TK 
Sbjct: 8   SSGRENLYFQGGPGRQEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKK 67

Query: 62  CEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRF 121
           CE +++       + V+DTPG+FD+   +    KEI++ I L   G HA+L+V  +  R+
Sbjct: 68  CEKRSSSW-KETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPL-GRY 125

Query: 122 SQEEEAA 128
           ++EE  A
Sbjct: 126 TEEEHKA 132

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270

 Score =  108 bits (272), Expect = 5e-29
 Identities = 26/129 (20%), Positives = 52/129 (40%), Gaps = 5/129 (3%)

Query: 1   MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTK 60
            +     ++++             T++++G+ G GKS+T NSI+G +    S   S   +
Sbjct: 17  FAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPR 76

Query: 61  TCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSV-RS 119
              +  +    G  +N+IDTPGL +    ++     I   +      I  +L V  +   
Sbjct: 77  PVMVSRSR--AGFTLNIIDTPGLIEGGYINDMALNIIKSFL--LDKTIDVLLYVDRLDAY 132

Query: 120 RFSQEEEAA 128
           R    ++  
Sbjct: 133 RVDNLDKLV 141

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A Length = 260

 Score = 99.0 bits (246), Expect = 2e-25
 Identities = 37/114 (32%), Positives = 64/114 (56%), Gaps = 2/114 (1%)

Query: 15  KPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQV 74
           K   +S  +  ++L+G+TG GKSA GNSIL ++AF++   S  +TKTC          + 
Sbjct: 14  KGQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW-GNRE 72

Query: 75  VNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEAA 128
           + +IDTP +F      E + KE+ +   L+  G H +L+V  +  R++ +++ A
Sbjct: 73  IVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL-GRYTSQDQQA 125

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 1e-06
 Identities = 34/283 (12%), Positives = 81/283 (28%), Gaps = 85/283 (30%)

Query: 26  VVLLGRTGNGKSATGNSILGRKAFKASADSSGV----TKTCEMKTTVLKDGQVVNVIDTP 81
           V++ G  G+GK+     +      +   D   +     K C    TVL+  Q +     P
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMD-FKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211

Query: 82  GLFDSSAGSEFV------GKEIVKRIGLAKGGIHAVLVV-----------FSVRSR---- 120
                S  S  +       +  ++R+  +K   + +LV+           F++  +    
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT 271

Query: 121 -----------------FSQEEEAANGGQPYTDEFLA------------ELKRG------ 145
                             S +  +           L             E+         
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331

Query: 146 --ATELRDQQAEVDSLKEYSKQEISKLM---------GQMQESYED------QIKRITEM 188
             A  +RD  A  D+ K  +  +++ ++          + ++ ++           I  +
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH-IPTI 390

Query: 189 VESEL-KETTTRLEQQLAEEQAARLMAEEVAQLAQMKSTKFKL 230
           + S +  +        +  +     + E+     Q K +   +
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEK-----QPKESTISI 428

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413

 Score = 45.5 bits (107), Expect = 6e-06
 Identities = 28/200 (14%), Positives = 63/200 (31%), Gaps = 23/200 (11%)

Query: 26  VVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTC-EMKTTVLKDGQVVNVIDTPGLF 84
           V + G TG+GKS+  N++ G    +  A  +GV +   E       +   V   D PG+ 
Sbjct: 72  VAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIG 131

Query: 85  DSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPY----- 134
            ++    F     ++++            +    +RF + +       +   + +     
Sbjct: 132 STN----FPPDTYLEKMKFY----EYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRT 183

Query: 135 -TDEFLAELKRGATELRDQQAEVDSLKEYSKQEISKLMGQMQESYEDQIKRITEMVESEL 193
             D  +     G  +  D++  +  ++        +        +    K +       L
Sbjct: 184 KVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVL 243

Query: 194 KETTTRLEQQLAEEQAARLM 213
            +    L   L   +    M
Sbjct: 244 MDK---LISDLPIYKRHNFM 260

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	231
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.71
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.7
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.69
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.68
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.68
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.66
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.64
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.63
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.63
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.62
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.61
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.6
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.59
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.59
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.58
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.56
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.56
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.55
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.54
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.54
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.54
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.53
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.53
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.53
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.52
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.5
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.5
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.49
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.46
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.46
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.46
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.45
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.45
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.45
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.45
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.44
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.44
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.43
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.43
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.43
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.42
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.42
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.42
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.41
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.4
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.4
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.39
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.39
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.39
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.39
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.39
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.39
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.38
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.38
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.38
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.38
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.37
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.37
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.37
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.37
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.37
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.37
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.37
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.37
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.36
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.35
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.35
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.35
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.35
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.34
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.34
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.34
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.34
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.34
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.34
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.34
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.34
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.34
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.34
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.33
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.33
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.33
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.33
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.33
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.33
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.33
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.33
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.33
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.32
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.32
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.32
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.32
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.32
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.32
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.32
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.32
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.32
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.32
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.32
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.32
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.31
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.31
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.31
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.31
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.31
1ji0_A	240	ABC transporter; ATP binding protein, structural g	99.31
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.31
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.3
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.3
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.3
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.3
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.3
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.29
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.29
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.29
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.28
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.28
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.28
1g6h_A	257	High-affinity branched-chain amino acid transport	99.28
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.28
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.28
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.27
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.27
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.27
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.27
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.27
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.27
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.27
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.27
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.27
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.27
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.26
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.26
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.26
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.26
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.26
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.26
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.26
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.25
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.25
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.25
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.25
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.24
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.24
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.24
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.24
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.23
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.23
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.23
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.23
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.22
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.22
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.22
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.22
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.22
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.21
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.21
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.21
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.21
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.2
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.2
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.2
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.2
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.2
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.19
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.19
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.19
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.19
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.19
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.19
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.19
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.18
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.18
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.17
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.15
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.15
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.15
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.15
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.14
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.14
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.14
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.14
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.14
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.14
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.13
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.13
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	99.13
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.13
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	98.73
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.12
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.12
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.12
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.11
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.11
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.1
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.1
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.09
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.09
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.09
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.08
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.07
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.07
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.06
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.05
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	99.05
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.04
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.03
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.03
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.02
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	99.02
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	99.02
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.02
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.02
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.01
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.01
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.01
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.0
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	99.0
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	98.99
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.98
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	98.96
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	98.96
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.95
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	98.95
2fh5_B	214	SR-beta, signal recognition particle receptor beta	98.94
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	98.93
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	98.93
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	98.93
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	98.92
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	98.9
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	98.9
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	98.9
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	98.9
2ged_A	193	SR-beta, signal recognition particle receptor beta	98.9
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	98.89
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	98.88
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.87
1nrj_B	218	SR-beta, signal recognition particle receptor beta	98.87
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.83
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	98.82
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.8
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	98.78
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.78
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	98.78
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	98.78
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	98.78
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	98.75
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	98.75
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	98.75
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	98.73
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	98.71
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	98.7
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.69
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	98.69
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	98.68
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	98.66
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.65
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.65
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	98.64
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	98.64
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	98.63
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	98.62
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	98.61
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	98.61
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	98.6
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	98.59
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	98.58
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	98.57
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	98.56
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.56
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	98.55
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	98.53
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	98.52
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.51
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	98.5
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	98.49
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.48
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.47
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	98.43
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.42
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	98.41
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	98.35
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	98.33
2eyu_A	261	Twitching motility protein PILT; pilus retraction	98.33
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	98.32
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	98.31
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.3
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	98.29
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	98.27
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.27
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	98.26
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.25
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	98.25
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.24
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.24
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	98.22
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	98.22
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	98.22
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.21
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	98.2
2og2_A	359	Putative signal recognition particle receptor; nuc	98.18
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.17
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.17
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.16
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	98.15
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	98.14
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	98.13
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	98.12
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	98.11
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	98.11
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	98.11
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.1
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	98.09
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	98.07
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.06
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.04
3kta_A	182	Chromosome segregation protein SMC; structural mai	98.04
1p9r_A	418	General secretion pathway protein E; bacterial typ	98.02
4a74_A	231	DNA repair and recombination protein RADA; hydrola	98.02
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	98.02
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	98.0
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.0
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	98.0
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	98.0
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	98.0
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.99
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	97.98
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	97.98
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.96
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.95
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.93
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.92
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.9
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.89
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.88
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.88
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	97.87
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	97.87
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.86
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.86
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.86
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.83
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	97.83
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.82
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	97.81
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.8
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	97.78
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.77
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.77
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.76
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	97.75
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	97.75
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	97.72
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.72
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.71
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.67
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	97.65
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.64
2xxa_A	433	Signal recognition particle protein; protein trans	97.64
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	97.62
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.62
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.61
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.61
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	97.59
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.59
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.58
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	97.55
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.54
1e69_A	322	Chromosome segregation SMC protein; structural mai	97.51
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	97.51
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.47
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.46
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	97.46
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	97.42
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	97.41
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.41
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.4
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.4
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	97.4
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.4
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.39
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.38
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	97.35
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.34
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	97.33
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.32
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.32
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.32
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	97.31
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	97.31
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	97.3
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	97.29
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.29
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.28
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.23
2hf9_A	226	Probable hydrogenase nickel incorporation protein	97.22
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.22
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	97.21
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.2
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.17
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.17
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.17
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.16
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.14
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.13
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.1
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.1
3ice_A	422	Transcription termination factor RHO; transcriptio	97.1
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.09
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	97.09
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.08
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.08
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.07
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.05
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.05
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	97.04
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.03
1via_A	175	Shikimate kinase; structural genomics, transferase	97.02
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	97.02
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.0
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.99
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	96.98
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.98
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.98
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.98
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.97
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.97
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.97
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.97
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.96
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.96
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.95
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.95
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	96.94
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.94
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	96.94
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.93
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.93
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.93
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.92
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.9
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.86
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.86
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.86
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.86
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.84
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.83
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.78
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.77
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.75
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.74
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	96.73
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.73
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.69
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	96.69
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.69
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.67
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.66
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.65
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.65
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.64
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.63
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.62
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.62
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	96.62
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	96.62
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.6
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.58
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	96.5
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.48
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.47
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	96.45
3bos_A	242	Putative DNA replication factor; P-loop containing	96.37
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	96.37
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	96.36
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	96.31
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.3
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.29
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.24
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	96.24
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.23
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	96.23
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	96.23
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	96.21
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	96.21
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.18
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.18
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.17
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	96.16
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.15
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.15
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.15
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	96.15
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.12
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	96.11
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	96.11
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	96.11
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	96.1
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	96.07
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.06

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.71  E-value=3.1e-16  Score=126.80  Aligned_cols=155  Identities=24%  Similarity=0.386  Sum_probs=103.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      ..+|+|+|++|||||||+|.|+|...+.......++|.........+ .+..+.++||||+.+...........+...+.
T Consensus        22 ~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~  100 (260)
T 2xtp_A           22 ELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW-GNREIVIIDTPDMFSWKDHCEALYKEVQRCYL  100 (260)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEE-TTEEEEEEECCGGGGSSCCCHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEe-CCCEEEEEECcCCCCCCCCHHHHHHHHHHHHH
Confidence            37999999999999999999999876554322223566555555555 78889999999998755444444455566666


Q ss_pred             hhcCCccEEEEEEECCCCCCHHHHH----hcC------CCCcHHHHHH-HHHhhH---HH------------HHhhcc--
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEEEA----ANG------GQPYTDEFLA-ELKRGA---TE------------LRDQQA--  154 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~~~----~~~------~~~~~~~~~~-~~~~~~---~~------------l~~~~~--  154 (231)
                      ..+..+|++++|+|++ ++...+..    ...      ..+.+ .+++ +++...   ..            +...+.  
T Consensus       101 ~~~~~~d~il~V~d~~-~~~~~~~~~~~~l~~~~~~~~~~~~i-~vv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~  178 (260)
T 2xtp_A          101 LSAPGPHVLLLVTQLG-RYTSQDQQAAQRVKEIFGEDAMGHTI-VLFTHKEDLNGGSLMDYMHDSDNKALSKLVAACGGR  178 (260)
T ss_dssp             HHTTCCSEEEEEEETT-CCCHHHHHHHHHHHHHHCGGGGGGEE-EEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTC
T ss_pred             hcCCCCcEEEEEEeCC-CCCHHHHHHHHHHHHHhCchhhccEE-EEEEcccccCCccHHHHHHhcchHHHHHHHHHhCCe
Confidence            6778999999999998 57766543    000      22332 2333 443211   01            111111  


Q ss_pred             --ch--hhhhhhhHhhHHHHHHHHHHHHHH
Q 038053          155 --EV--DSLKEYSKQEISKLMGQMQESYED  180 (231)
Q Consensus       155 --~i--~~is~~~~~~i~~l~~~i~~~~~~  180 (231)
                        +.  +.+||.++.|+++++..+......
T Consensus       179 ~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~  208 (260)
T 2xtp_A          179 ICAFNNRAEGSNQDDQVKELMDCIEDLLME  208 (260)
T ss_dssp             EEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence              12  678999999999999998876654

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.70  E-value=3.3e-16  Score=125.13  Aligned_cols=102  Identities=42%  Similarity=0.716  Sum_probs=73.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           22 GKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        22 ~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      ...+|+|+|++|+|||||+|+|+|...+..+....++|..+......+ .+..+.++||||+++...........+...+
T Consensus        28 ~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~  106 (239)
T 3lxx_A           28 SQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW-KETELVVVDTPGIFDTEVPNAETSKEIIRCI  106 (239)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEE-TTEEEEEEECCSCC-----CHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEe-CCceEEEEECCCccCCCCCHHHHHHHHHHHH
Confidence            348999999999999999999999887544322225666665555555 7888999999999986655566667777777


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHH
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEE  125 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~  125 (231)
                      ....+.+|++++|+|++ +++..+
T Consensus       107 ~~~~~~~~~~l~v~d~~-~~~~~~  129 (239)
T 3lxx_A          107 LLTSPGPHALLLVVPLG-RYTEEE  129 (239)
T ss_dssp             HHTTTCCSEEEEEEETT-CCSSHH
T ss_pred             HhcCCCCcEEEEEeeCC-CCCHHH
Confidence            77778999999999997 565544

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.68  E-value=8.9e-16  Score=127.31  Aligned_cols=153  Identities=16%  Similarity=0.309  Sum_probs=108.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeC-CcEEEEEeCCCCcCCCCCchHHHHHHHHH
Q 038053           22 GKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDSSAGSEFVGKEIVKR  100 (231)
Q Consensus        22 ~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~  100 (231)
                      ++..|+++|++|||||||+|.|+|...... ...+++|.......... . +..+.++||||+.... ....+...+...
T Consensus         9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~i~-s~~~~tT~~~~~~~~~~-~~~~~i~lvDTPG~~~~~-~~~~l~~~~~~~   85 (308)
T 3iev_A            9 KVGYVAIVGKPNVGKSTLLNNLLGTKVSII-SPKAGTTRMRVLGVKNI-PNEAQIIFLDTPGIYEPK-KSDVLGHSMVEI   85 (308)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCSCC-CSSSCCCCSCEEEEEEE-TTTEEEEEEECCCCCCCC-TTCHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCcccc-CCCCCceeeEEEEEEec-CCCCeEEEEECcCCCccc-cchhHHHHHHHH
Confidence            345999999999999999999999876543 24556666555554444 5 7889999999998644 224566667766


Q ss_pred             HhhhcCCccEEEEEEECCCCCCHHHHHh------cCCCCcHHHHHHHHHhh--H-------HHHHhhc---cchhhhhhh
Q 038053          101 IGLAKGGIHAVLVVFSVRSRFSQEEEAA------NGGQPYTDEFLAELKRG--A-------TELRDQQ---AEVDSLKEY  162 (231)
Q Consensus       101 ~~~~~~~~~~il~vvd~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~--~-------~~l~~~~---~~i~~is~~  162 (231)
                      ....+..+|++++|+|+++.++..+...      ....|.+ .++|++|..  .       ..+...+   .+++++||.
T Consensus        86 ~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvi-lV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~  164 (308)
T 3iev_A           86 AKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVI-VVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISAL  164 (308)
T ss_dssp             HHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEE-EEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTT
T ss_pred             HHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEE-EEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCC
Confidence            6677788999999999997777665441      1223433 334444421  0       2344444   367889999


Q ss_pred             hHhhHHHHHHHHHHHH
Q 038053          163 SKQEISKLMGQMQESY  178 (231)
Q Consensus       163 ~~~~i~~l~~~i~~~~  178 (231)
                      +|.|+++++..+...+
T Consensus       165 ~g~gv~~L~~~l~~~l  180 (308)
T 3iev_A          165 KGANLDELVKTILKYL  180 (308)
T ss_dssp             TTBSHHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHhC
Confidence            9999999999988765

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.68  E-value=3.1e-16  Score=129.59  Aligned_cols=148  Identities=21%  Similarity=0.241  Sum_probs=102.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      ..|+|+|+||||||||+|.|+|....... ..+++|.......... .+..+.++||||+....   ..+...+......
T Consensus         8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs-~~~~tTr~~i~~i~~~-~~~~l~l~DTpG~~~~~---~~l~~~~~~~~~~   82 (301)
T 1wf3_A            8 GFVAIVGKPNVGKSTLLNNLLGVKVAPIS-PRPQTTRKRLRGILTE-GRRQIVFVDTPGLHKPM---DALGEFMDQEVYE   82 (301)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSCCSCCC-SSSCCCCSCEEEEEEE-TTEEEEEEECCCCCCCC---SHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeec-CCCCceeEEEEEEEEe-CCcEEEEecCccccchh---hHHHHHHHHHHHH
Confidence            47999999999999999999998764432 3445565443333333 67789999999998643   3455556666667


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH----hc-C--CCCcHHHHHHHHHhhH-HH-----HHhhc--cchhhhhhhhHhhHH
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA----AN-G--GQPYTDEFLAELKRGA-TE-----LRDQQ--AEVDSLKEYSKQEIS  168 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~----~~-~--~~~~~~~~~~~~~~~~-~~-----l~~~~--~~i~~is~~~~~~i~  168 (231)
                      .+..+|++++|+|++++++..+..    .. .  ..|.+ .++|++|... ..     +....  .+++++||.+|.|++
T Consensus        83 ~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~i-lV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gv~  161 (301)
T 1wf3_A           83 ALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPIL-LVGNKLDAAKYPEEAMKAYHELLPEAEPRMLSALDERQVA  161 (301)
T ss_dssp             HTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEE-EEEECGGGCSSHHHHHHHHHHTSTTSEEEECCTTCHHHHH
T ss_pred             HHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEE-EEEECcccCCchHHHHHHHHHhcCcCcEEEEeCCCCCCHH
Confidence            788999999999998778776644    11 1  34443 4445554211 11     12211  256789999999999


Q ss_pred             HHHHHHHHH
Q 038053          169 KLMGQMQES  177 (231)
Q Consensus       169 ~l~~~i~~~  177 (231)
                      .++..+...
T Consensus       162 ~l~~~l~~~  170 (301)
T 1wf3_A          162 ELKADLLAL  170 (301)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHHh
Confidence            999988763

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.66  E-value=3e-16  Score=126.87  Aligned_cols=148  Identities=16%  Similarity=0.206  Sum_probs=98.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCch--HHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSE--FVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~--~~~~~~~~~~  101 (231)
                      .+|+|+|.+|||||||+|.|+|.....+  ..+++|++........ .+..+.++||||.+.......  ...+.+...+
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~--~~pg~Tv~~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~   78 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVG--NWPGVTVEKKTGEFLL-GEHLIEITDLPGVYSLVANAEGISQDEQIAAQS   78 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEE--ECTTSSSEEEEEEEEE-TTEEEEEEECCCCSSCC------CHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCcc--CCCCceEEEEEEEEEE-CCeEEEEEeCCCcccccccccCCCHHHHHHHHH
Confidence            4799999999999999999999975433  5778888777666666 777899999999987542110  2222333332


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH----hcCCCCcHHHHHHHHHhh--------HHHHHhhcc-chhhhhhhhHhhHH
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA----ANGGQPYTDEFLAELKRG--------ATELRDQQA-EVDSLKEYSKQEIS  168 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--------~~~l~~~~~-~i~~is~~~~~~i~  168 (231)
                      .. ...+|++++|+|+++ .......    .....|++ .++|++|..        ...|...++ +++++||.+|.|++
T Consensus        79 ~~-~~~~d~vi~VvDas~-~~~~~~l~~~l~~~~~pvi-lv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~  155 (256)
T 3iby_A           79 VI-DLEYDCIINVIDACH-LERHLYLTSQLFELGKPVV-VALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNIGIP  155 (256)
T ss_dssp             HH-HSCCSEEEEEEEGGG-HHHHHHHHHHHTTSCSCEE-EEEECHHHHHHTTCEECHHHHHHHHCSCEEECBGGGTBSHH
T ss_pred             Hh-hCCCCEEEEEeeCCC-chhHHHHHHHHHHcCCCEE-EEEEChhcCCcCCcHHHHHHHHHHcCCCEEEEECCCCCCHH
Confidence            22 268999999999984 2111111    22344444 333443311        134444444 78899999999999


Q ss_pred             HHHHHHHHH
Q 038053          169 KLMGQMQES  177 (231)
Q Consensus       169 ~l~~~i~~~  177 (231)
                      +++..+.+.
T Consensus       156 el~~~i~~~  164 (256)
T 3iby_A          156 ALQQSLLHC  164 (256)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHHhh
Confidence            999998764

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.64  E-value=9.5e-16  Score=116.36  Aligned_cols=149  Identities=21%  Similarity=0.252  Sum_probs=92.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+|+|++|||||||+|.|++...... ...+++|.+........ .+..+.++||||+....   .............
T Consensus         5 ~ki~ivG~~g~GKStLl~~l~~~~~~~~-~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~---~~~~~~~~~~~~~   79 (172)
T 2gj8_A            5 MKVVIAGRPNAGKSSLLNALAGREAAIV-TDIAGTTRDVLREHIHI-DGMPLHIIDTAGLREAS---DEVERIGIERAWQ   79 (172)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCC-CSSTTCCCSCEEEEEEE-TTEEEEEEECCCCSCCS---SHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCccee-eCCCCceeceeeEEEEE-CCeEEEEEECCCcccch---hHHHHHHHHHHHH
Confidence            7999999999999999999999864322 23455555544444444 66778899999986532   1111111111223


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH-------h-cCCCCcHHHHHHHHHhhHH--HHHh-hccchhhhhhhhHhhHHHHHH
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA-------A-NGGQPYTDEFLAELKRGAT--ELRD-QQAEVDSLKEYSKQEISKLMG  172 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~-------~-~~~~~~~~~~~~~~~~~~~--~l~~-~~~~i~~is~~~~~~i~~l~~  172 (231)
                      .+..+|++++|+|+++..+..+..       . ....|++ .+.++.|...+  .+.. ...+++.+||++|.|+++++.
T Consensus        80 ~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~i-lv~NK~Dl~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~  158 (172)
T 2gj8_A           80 EIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPIT-VVRNKADITGETLGMSEVNGHALIRLSARTGEGVDVLRN  158 (172)
T ss_dssp             HHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEE-EEEECHHHHCCCCEEEEETTEEEEECCTTTCTTHHHHHH
T ss_pred             HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEE-EEEECccCCcchhhhhhccCCceEEEeCCCCCCHHHHHH
Confidence            346789999999998655433221       1 1123443 45566551100  0000 011567899999999999998


Q ss_pred             HHHHHH
Q 038053          173 QMQESY  178 (231)
Q Consensus       173 ~i~~~~  178 (231)
                      .+.+.+
T Consensus       159 ~l~~~~  164 (172)
T 2gj8_A          159 HLKQSM  164 (172)
T ss_dssp             HHHHHC
T ss_pred             HHHHHh
Confidence            887654

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.63  E-value=6e-16  Score=126.27  Aligned_cols=148  Identities=18%  Similarity=0.190  Sum_probs=98.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCc--hHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGS--EFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~--~~~~~~~~~~~  101 (231)
                      .+|+|+|.+|||||||+|.|+|.... . ...+++|++........ .+..+.++||||.++.....  ..+.+.+...+
T Consensus         4 ~~I~lvG~~n~GKSTLin~l~g~~~~-v-~~~~g~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~   80 (274)
T 3i8s_A            4 LTIGLIGNPNSGKTTLFNQLTGSRQR-V-GNWAGVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (274)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTTCEE-E-EECTTSSSEEEEEEEEC-SSCEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCcc-c-CCCCCeeEEEEEEEEEe-CCCceEEEECcCCCccccccccCCHHHHHHHHH
Confidence            78999999999999999999999743 3 25778888776666665 67788999999998754321  12233333332


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH----hcCCCCcHHHHHHHHHhh--------HHHHHhhcc-chhhhhhhhHhhHH
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA----ANGGQPYTDEFLAELKRG--------ATELRDQQA-EVDSLKEYSKQEIS  168 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--------~~~l~~~~~-~i~~is~~~~~~i~  168 (231)
                      . ....+|++++|+|+++ +......    .....|++ .++|++|..        ...+...++ +++.+|+.+|.|++
T Consensus        81 ~-~~~~~d~ii~VvD~~~-~~~~~~~~~~l~~~~~p~i-vv~NK~Dl~~~~~~~~~~~~l~~~lg~~~i~~SA~~g~gi~  157 (274)
T 3i8s_A           81 I-LSGDADLLINVVDASN-LERNLYLTLQLLELGIPCI-VALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGRGIE  157 (274)
T ss_dssp             H-HHTCCSEEEEEEEGGG-HHHHHHHHHHHHHHTCCEE-EEEECHHHHHHTTEEECHHHHHHHHTSCEEECCCGGGHHHH
T ss_pred             H-hhcCCCEEEEEecCCC-hHHHHHHHHHHHhcCCCEE-EEEECccchhhhhHHHHHHHHHHhcCCCEEEEEcCCCCCHH
Confidence            2 2378999999999983 2111111    22234444 233443311        134444443 78889999999999


Q ss_pred             HHHHHHHHH
Q 038053          169 KLMGQMQES  177 (231)
Q Consensus       169 ~l~~~i~~~  177 (231)
                      +++..+.+.
T Consensus       158 el~~~i~~~  166 (274)
T 3i8s_A          158 ALKLAIDRY  166 (274)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHHHH
Confidence            999988654

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.63  E-value=6.6e-15  Score=119.07  Aligned_cols=148  Identities=20%  Similarity=0.233  Sum_probs=98.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+|+|.+|||||||+|.|+|......  ..+++|.......... .+..+.++||||.+......  ..+.+...+..
T Consensus         6 ~kI~lvG~~nvGKTsL~n~l~g~~~~~~--~~pg~tv~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~--~~e~v~~~~~~   80 (258)
T 3a1s_A            6 VKVALAGCPNVGKTSLFNALTGTKQYVA--NWPGVTVEKKEGVFTY-KGYTINLIDLPGTYSLGYSS--IDEKIARDYLL   80 (258)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTTCEEEE--ECTTSCCEEEEEEEEE-TTEEEEEEECCCCSSCCSSS--HHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHCCCCccc--CCCCceEEEEEEEEEE-CCeEEEEEECCCcCccCCCC--HHHHHHHHHHh
Confidence            6899999999999999999999876432  4677887766655555 67889999999998654322  12223222222


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH----hcCCCCcHHHHHHHHHhh--------HHHHHhhcc-chhhhhhhhHhhHHHH
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA----ANGGQPYTDEFLAELKRG--------ATELRDQQA-EVDSLKEYSKQEISKL  170 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--------~~~l~~~~~-~i~~is~~~~~~i~~l  170 (231)
                      . ..+|++++|+|+++ +......    .....|++ .++|++|..        ...+...++ +++.+|+++|.|++++
T Consensus        81 ~-~~~d~ii~V~D~t~-~~~~~~~~~~l~~~~~pvi-lv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi~~SA~~g~gi~el  157 (258)
T 3a1s_A           81 K-GDADLVILVADSVN-PEQSLYLLLEILEMEKKVI-LAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLEEL  157 (258)
T ss_dssp             H-SCCSEEEEEEETTS-CHHHHHHHHHHHTTTCCEE-EEEECHHHHHHTTCCBCHHHHHHHHCSCEEECCTTTCTTHHHH
T ss_pred             h-cCCCEEEEEeCCCc-hhhHHHHHHHHHhcCCCEE-EEEECcCCCCccchHHHHHHHHHHcCCCEEEEEeeCCcCHHHH
Confidence            2 67899999999984 3222111    23344544 233333311        134444444 7888999999999999


Q ss_pred             HHHHHHHHH
Q 038053          171 MGQMQESYE  179 (231)
Q Consensus       171 ~~~i~~~~~  179 (231)
                      +..+.....
T Consensus       158 ~~~i~~~~~  166 (258)
T 3a1s_A          158 KEKIVEYAQ  166 (258)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            998877543

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.62  E-value=5.3e-15  Score=128.34  Aligned_cols=150  Identities=19%  Similarity=0.246  Sum_probs=93.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+|||+||+|||||+|.|+|...... .+.+++|++.......+ .+..+.++||||+....  .+.+...+......
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v-~~~~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~--~~~~~~~~~~~~~~   77 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIV-EDEEGVTRDPVQDTVEW-YGKTFKLVDTCGVFDNP--QDIISQKMKEVTLN   77 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEE-TTEEEEEEECTTTTSSG--GGCCCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCcee-cCCCCCccceeeEEEEE-CCeEEEEEECCCccccc--cchHHHHHHHHHHH
Confidence            4799999999999999999999875444 36788888877777777 78889999999987521  11122334444555


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHh------hH-HHHHh-hccchhhhhhhhHhhHHHH
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKR------GA-TELRD-QQAEVDSLKEYSKQEISKL  170 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~------~~-~~l~~-~~~~i~~is~~~~~~i~~l  170 (231)
                      ++..+|++++|+|++++++..+..     .....|.+ .++|+.|.      .. .++.. .+.+++.+||.+|.|+.++
T Consensus        78 ~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~i-lv~NK~D~~~~~~~~~~~~~~~lg~~~~~~iSA~~g~gv~~L  156 (439)
T 1mky_A           78 MIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTI-LVANKAENLREFEREVKPELYSLGFGEPIPVSAEHNINLDTM  156 (439)
T ss_dssp             HHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEE-EEEESCCSHHHHHHHTHHHHGGGSSCSCEECBTTTTBSHHHH
T ss_pred             HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEeCCCCccccHHHHHHHHHhcCCCCEEEEeccCCCCHHHH
Confidence            668899999999998888876644     11233433 22233221      00 12221 1225677999999999999


Q ss_pred             HHHHHHHH
Q 038053          171 MGQMQESY  178 (231)
Q Consensus       171 ~~~i~~~~  178 (231)
                      ++.+...+
T Consensus       157 ~~~i~~~l  164 (439)
T 1mky_A          157 LETIIKKL  164 (439)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            99887654

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.61  E-value=1.2e-15  Score=124.24  Aligned_cols=148  Identities=16%  Similarity=0.192  Sum_probs=98.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+|+|++|||||||+|.|+|.... .+ ..+++|.+.......+ .+..+.++||||+++.....  ....+...+. 
T Consensus         4 ~~i~lvG~~g~GKTTL~n~l~g~~~~-~~-~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~--~~~~~~~~~~-   77 (271)
T 3k53_A            4 KTVALVGNPNVGKTTIFNALTGLRQH-VG-NWPGVTVEKKEGIMEY-REKEFLVVDLPGIYSLTAHS--IDELIARNFI-   77 (271)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHTTCEE-EE-ECTTSSCEEEEEEEEE-TTEEEEEEECCCCSCCCSSC--HHHHHHHHHH-
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCcc-cC-CCCCeEEEeeEEEEEE-CCceEEEEeCCCccccccCC--HHHHHHHHhh-
Confidence            68999999999999999999999763 32 5677777766666666 77789999999998644321  1112222222 


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH----hcCC-CCcHHHHHHHHHh---h-----HHHHHhhcc-chhhhhhhhHhhHHH
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA----ANGG-QPYTDEFLAELKR---G-----ATELRDQQA-EVDSLKEYSKQEISK  169 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~---~-----~~~l~~~~~-~i~~is~~~~~~i~~  169 (231)
                      ....+|++++|+|+++. ......    .... .|.+ .++|++|.   .     ...+...++ +++++|+.+|.|+.+
T Consensus        78 ~~~~~d~vi~v~D~~~~-~~~~~~~~~~~~~~~~p~i-lv~NK~Dl~~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~gi~~  155 (271)
T 3k53_A           78 LDGNADVIVDIVDSTCL-MRNLFLTLELFEMEVKNII-LVLNKFDLLKKKGAKIDIKKMRKELGVPVIPTNAKKGEGVEE  155 (271)
T ss_dssp             HTTCCSEEEEEEEGGGH-HHHHHHHHHHHHTTCCSEE-EEEECHHHHHHHTCCCCHHHHHHHHSSCEEECBGGGTBTHHH
T ss_pred             hccCCcEEEEEecCCcc-hhhHHHHHHHHhcCCCCEE-EEEEChhcCcccccHHHHHHHHHHcCCcEEEEEeCCCCCHHH
Confidence            23689999999999842 111111    2223 4544 33344331   1     134555444 788899999999999


Q ss_pred             HHHHHHHHHH
Q 038053          170 LMGQMQESYE  179 (231)
Q Consensus       170 l~~~i~~~~~  179 (231)
                      ++..+.....
T Consensus       156 l~~~i~~~~~  165 (271)
T 3k53_A          156 LKRMIALMAE  165 (271)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999887654

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.60  E-value=2.3e-14  Score=112.67  Aligned_cols=156  Identities=13%  Similarity=0.204  Sum_probs=98.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCCc-cccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchH--HHHHHH
Q 038053           22 GKRTVVLLGRTGNGKSATGNSILGRKA-FKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEF--VGKEIV   98 (231)
Q Consensus        22 ~~~~i~lvG~~g~GKSTLin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~--~~~~~~   98 (231)
                      ...+|+|+|.+|+|||||+|.|++... ... ...+++|............+..+.++||||+.........  ....+.
T Consensus        28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~  106 (223)
T 4dhe_A           28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFA-SKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL  106 (223)
T ss_dssp             CSCEEEEEESCHHHHHHHHHHHTTCSSSSCT-TCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcceee-cCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence            347999999999999999999999862 222 2455666655444443225678899999998754322221  112233


Q ss_pred             HHHhhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhhH------------HHHHhh-------cc
Q 038053           99 KRIGLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRGA------------TELRDQ-------QA  154 (231)
Q Consensus        99 ~~~~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~------------~~l~~~-------~~  154 (231)
                      ..+......+|++++|+|+++.++..+..     .....|++ .++++.|...            ..+...       ..
T Consensus       107 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i-~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  185 (223)
T 4dhe_A          107 SSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIH-SLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKL  185 (223)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEE-EEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCE
T ss_pred             HHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEE-EEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCC
Confidence            33333446789999999998777776654     22233433 2333333100            122221       12


Q ss_pred             chhhhhhhhHhhHHHHHHHHHHHHH
Q 038053          155 EVDSLKEYSKQEISKLMGQMQESYE  179 (231)
Q Consensus       155 ~i~~is~~~~~~i~~l~~~i~~~~~  179 (231)
                      +++.+|+++|.|+.+++..+.+.+.
T Consensus       186 ~~~~~SA~~g~gv~~l~~~l~~~~~  210 (223)
T 4dhe_A          186 TVQLFSALKRTGLDDAHALIESWLR  210 (223)
T ss_dssp             EEEEEBTTTTBSHHHHHHHHHHHHC
T ss_pred             eEEEeecCCCcCHHHHHHHHHHhcC
Confidence            6788999999999999988877543

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.59  E-value=5.6e-15  Score=122.09  Aligned_cols=147  Identities=17%  Similarity=0.257  Sum_probs=96.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCc-CCCCCchHHHHHHHHHHh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF-DSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~-~~~~~~~~~~~~~~~~~~  102 (231)
                      ..|+|+|+||||||||+|+|+|....... ..+++|.....+.... .+..+.++||||+. ..   ...+...+.....
T Consensus         9 ~~VaIvG~~nvGKSTLln~L~g~~~~i~s-~~~~tTr~~~~gi~~~-~~~~i~~iDTpG~~~~~---~~~l~~~~~~~~~   83 (301)
T 1ega_A            9 GFIAIVGRPNVGKSTLLNKLLGQKISITS-RKAQTTRHRIVGIHTE-GAYQAIYVDTPGLHMEE---KRAINRLMNKAAS   83 (301)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHTCSEEECC-CCSSCCSSCEEEEEEE-TTEEEEEESSSSCCHHH---HHHHHHHHTCCTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCccccC-CCCCcceeeEEEEEEE-CCeeEEEEECcCCCccc---hhhHHHHHHHHHH
Confidence            58999999999999999999999764332 3455565444444444 67788999999986 21   1122223333334


Q ss_pred             hhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhhH---------HHHHhhcc--chhhhhhhhHhh
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRGA---------TELRDQQA--EVDSLKEYSKQE  166 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~---------~~l~~~~~--~i~~is~~~~~~  166 (231)
                      .++..+|++++|+|+++ ++..+..     .....|.+ .++|++|...         ..+.+..+  .++++|++++.+
T Consensus        84 ~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~i-lvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~  161 (301)
T 1ega_A           84 SSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVI-LAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLN  161 (301)
T ss_dssp             SCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEE-EEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTT
T ss_pred             HHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEE-EEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCC
Confidence            55688999999999986 8877654     22234443 2334433210         13333332  477899999999


Q ss_pred             HHHHHHHHHHH
Q 038053          167 ISKLMGQMQES  177 (231)
Q Consensus       167 i~~l~~~i~~~  177 (231)
                      +..+++.+...
T Consensus       162 v~~l~~~i~~~  172 (301)
T 1ega_A          162 VDTIAAIVRKH  172 (301)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHh
Confidence            99999988753

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.59  E-value=4e-15  Score=125.91  Aligned_cols=103  Identities=17%  Similarity=0.238  Sum_probs=77.0

Q ss_pred             cccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHH
Q 038053           14 WKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFV   93 (231)
Q Consensus        14 ~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~   93 (231)
                      ..|.+.+.+...|||||.||||||||||+|+|.....  .+.+++|+++..+.... .+..+.++||||+.+.......+
T Consensus        63 ~~f~v~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v--~~~pftT~~~~~g~~~~-~~~~i~l~D~pGl~~~a~~~~~~  139 (376)
T 4a9a_A           63 IGFDVARTGVASVGFVGFPSVGKSTLLSKLTGTESEA--AEYEFTTLVTVPGVIRY-KGAKIQMLDLPGIIDGAKDGRGR  139 (376)
T ss_dssp             BTTTBCBCSSEEEEEECCCCHHHHHHHHHHHSBCCCG--GGTCSSCCCEEEEEEEE-TTEEEEEEECGGGCCC-----CH
T ss_pred             CCceEeecCCCeEEEECCCCCCHHHHHHHHhCCCCcc--cCCCCceeeeeeEEEEe-CCcEEEEEeCCCccCCchhhhHH
Confidence            3455655555799999999999999999999987543  36788999888887777 88999999999998765544555


Q ss_pred             HHHHHHHHhhhcCCccEEEEEEECCCCCCH
Q 038053           94 GKEIVKRIGLAKGGIHAVLVVFSVRSRFSQ  123 (231)
Q Consensus        94 ~~~~~~~~~~~~~~~~~il~vvd~~~~~~~  123 (231)
                      +..++..+    ..+|++++|+|+++++.+
T Consensus       140 g~~~l~~i----~~ad~il~vvD~~~p~~~  165 (376)
T 4a9a_A          140 GKQVIAVA----RTCNLLFIILDVNKPLHH  165 (376)
T ss_dssp             HHHHHHHH----HHCSEEEEEEETTSHHHH
T ss_pred             HHHHHHHH----HhcCccccccccCccHHH
Confidence            55555544    456999999999854433

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.58  E-value=3.3e-15  Score=129.53  Aligned_cols=159  Identities=21%  Similarity=0.239  Sum_probs=96.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      ..+|+++|++|+|||||+|.|+|...... ...+++|.+........ .+..+.++||||+.......+.+.........
T Consensus       175 ~~ki~lvG~~nvGKSSLin~l~~~~~~~~-~~~~gtT~d~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~  252 (436)
T 2hjg_A          175 VIQFCLIGRPNVGKSSLVNAMLGEERVIV-SNVAGTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL  252 (436)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTSTTEEE-C---------CCEEEEE-TTEEEEETTHHHHTCBTTBCCCCSHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCCCceee-cCCCCceeeeeEEEEEE-CCeEEEEEECCCcCcCccccchHHHHHHHHHH
Confidence            37999999999999999999999876433 24566776655444555 67789999999986533322211111111112


Q ss_pred             hhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhh---------H-HHHHhhc-----cchhhhhhh
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRG---------A-TELRDQQ-----AEVDSLKEY  162 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~---------~-~~l~~~~-----~~i~~is~~  162 (231)
                      ..+..+|++++|+|++++++.++..     ...+.+++ .++|+.|..         . ..+...+     .+++++||+
T Consensus       253 ~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~ii-iv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~  331 (436)
T 2hjg_A          253 KAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVV-IVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSAL  331 (436)
T ss_dssp             HHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEE-EEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTT
T ss_pred             HHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEE-EEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecc
Confidence            2345679999999999888877754     12233332 222222210         0 1222222     167889999


Q ss_pred             hHhhHHHHHHHHHHHHHHHHHH
Q 038053          163 SKQEISKLMGQMQESYEDQIKR  184 (231)
Q Consensus       163 ~~~~i~~l~~~i~~~~~~~~~~  184 (231)
                      +|.|+.+++..+...+..+..+
T Consensus       332 tg~~v~~l~~~i~~~~~~~~~~  353 (436)
T 2hjg_A          332 TKKRIHTLMPAIIKASENHSLR  353 (436)
T ss_dssp             TCTTGGGHHHHHHHHHHHHTCC
T ss_pred             cCCCHHHHHHHHHHHHHHhhcC
Confidence            9999999999998887765433

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.56  E-value=3.2e-15  Score=129.73  Aligned_cols=161  Identities=17%  Similarity=0.217  Sum_probs=94.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCc-hHHHHHHHHHH
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGS-EFVGKEIVKRI  101 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~-~~~~~~~~~~~  101 (231)
                      ..+|+|+|+||||||||+|.|+|...... ...+++|++.......+ .+..+.++||||+....... +..........
T Consensus       180 ~~kvaivG~~gvGKSTLln~l~g~~~~~v-~~~~gtT~d~~~~~i~~-~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~  257 (439)
T 1mky_A          180 AIKVAIVGRPNVGKSTLFNAILNKERALV-SPIPGTTRDPVDDEVFI-DGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRV  257 (439)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTSTTEEE-CCCC------CCEEEEE-TTEEEEESSCSCC-----------CCSCCHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHhCCccccc-CCCCCCcCCceEEEEEE-CCEEEEEEECCCCccccccchhhHHHHHHHHH
Confidence            37999999999999999999999975444 35667777665555555 77788999999985322111 00000000001


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHh----h--H----HHHHhhc-----cchhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKR----G--A----TELRDQQ-----AEVDSLKE  161 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~----~--~----~~l~~~~-----~~i~~is~  161 (231)
                      ...+..+|++++++|++++.+..+..     ...+.+++ .++++.|.    .  .    ..+...+     .+++++||
T Consensus       258 ~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~i-lv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA  336 (439)
T 1mky_A          258 VDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASV-VVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSA  336 (439)
T ss_dssp             HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEE-EEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBT
T ss_pred             HHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEEC
Confidence            12335679999999998777766543     12233333 12222220    0  0    1222222     26778999


Q ss_pred             hhHhhHHHHHHHHHHHHHHHHHHHH
Q 038053          162 YSKQEISKLMGQMQESYEDQIKRIT  186 (231)
Q Consensus       162 ~~~~~i~~l~~~i~~~~~~~~~~~~  186 (231)
                      ++|.|+.+++..+.+.+..+..++.
T Consensus       337 ~~g~gv~~l~~~i~~~~~~~~~~i~  361 (439)
T 1mky_A          337 DKGWNIDRMIDAMNLAYASYTTKVP  361 (439)
T ss_dssp             TTTBSHHHHHHHHHHHHHHHTCCCC
T ss_pred             CCCCCHHHHHHHHHHHHHhhcccCC
Confidence            9999999999999988877654443

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.56  E-value=7.2e-16  Score=133.72  Aligned_cols=149  Identities=19%  Similarity=0.224  Sum_probs=91.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+|+|++|+|||||+|.|+|...... ...+++|++.......+ .+..+.++||||+....   ..+...+......
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~---~~~~~~~~~~~~~   78 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEW-LNYDFNLIDTGGIDIGD---EPFLAQIRQQAEI   78 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTT-CSSCCEEEC------------CHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCCccceEEEEEEE-CCceEEEEECCCCCCcc---hhHHHHHHHHHHH
Confidence            5899999999999999999999876544 35778888776666666 67789999999986422   1244455555555


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhhH-----HHHHh-hccchhhhhhhhHhhHHHHHH
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRGA-----TELRD-QQAEVDSLKEYSKQEISKLMG  172 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-----~~l~~-~~~~i~~is~~~~~~i~~l~~  172 (231)
                      ++..+|++++|+|+.++++..+..     .....|.+ .++|+.|...     .++.. .+.+++.+||.+|.|+.++++
T Consensus        79 ~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvi-lv~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~gv~~L~~  157 (436)
T 2hjg_A           79 AMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVV-LAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLD  157 (436)
T ss_dssp             HHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEE-EEEECCCC-----CCCSSGGGSSCCCEECBTTTTBTHHHHHH
T ss_pred             HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECccCccchhhHHHHHHcCCCCeEEEeCcCCCChHHHHH
Confidence            667889999999998888877654     22334443 4445544211     01111 123677899999999999999


Q ss_pred             HHHHHH
Q 038053          173 QMQESY  178 (231)
Q Consensus       173 ~i~~~~  178 (231)
                      .+...+
T Consensus       158 ~i~~~l  163 (436)
T 2hjg_A          158 AVAEHF  163 (436)
T ss_dssp             HHHHTG
T ss_pred             HHHHhc
Confidence            887654

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.55  E-value=1.1e-14  Score=126.94  Aligned_cols=160  Identities=21%  Similarity=0.244  Sum_probs=101.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      ..+|+++|.+|+|||||+|.|+|...... ...+++|.+........ .+..+.++||||+...................
T Consensus       195 ~~ki~ivG~~~vGKSslin~l~~~~~~~~-~~~~gtt~~~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~  272 (456)
T 4dcu_A          195 VIQFCLIGRPNVGKSSLVNAMLGEERVIV-SNVAGTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL  272 (456)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTSTTEEE-CC------CTTSEEEEE-TTEEEEETTGGGTTTBTTBCCCCSHHHHHHHH
T ss_pred             cceeEEecCCCCCHHHHHHHHhCCCcccc-CCCCCeEEEEEEEEEEE-CCceEEEEECCCCCcCcccchHHHHHHHHHHH
Confidence            48999999999999999999999875444 24566676655444555 77789999999986533221111111111122


Q ss_pred             hhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhh---------H-HHHHhhc-----cchhhhhhh
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRG---------A-TELRDQQ-----AEVDSLKEY  162 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~---------~-~~l~~~~-----~~i~~is~~  162 (231)
                      ..+..+|++++|+|+++.+...+..     ...+.+++ .+.|+.|..         . +.+.+.+     .+++++||+
T Consensus       273 ~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~i-lv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~  351 (456)
T 4dcu_A          273 KAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVV-IVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSAL  351 (456)
T ss_dssp             HHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEE-EEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTT
T ss_pred             HHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEE-EEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCC
Confidence            2346779999999999888887765     22334443 223333310         0 2233332     267889999


Q ss_pred             hHhhHHHHHHHHHHHHHHHHHHH
Q 038053          163 SKQEISKLMGQMQESYEDQIKRI  185 (231)
Q Consensus       163 ~~~~i~~l~~~i~~~~~~~~~~~  185 (231)
                      +|.|+.+++..+.+.+..+..++
T Consensus       352 ~g~gv~~l~~~i~~~~~~~~~~~  374 (456)
T 4dcu_A          352 TKKRIHTLMPAIIKASENHSLRV  374 (456)
T ss_dssp             TCTTGGGHHHHHHHHHHHHTCCC
T ss_pred             CCcCHHHHHHHHHHHHHHhcccC
Confidence            99999999999998877665443

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.54  E-value=3.8e-14  Score=115.38  Aligned_cols=145  Identities=17%  Similarity=0.221  Sum_probs=91.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+|+|+||||||||+|.|+|......  ..+++|.+........  +..+.++||||.+......  ..+.+...+..
T Consensus         4 ~kI~lvG~~nvGKSTL~n~L~g~~~~v~--~~pg~tv~~~~~~~~~--~~~l~l~DtpG~~~~~~~~--~~e~v~~~~~~   77 (272)
T 3b1v_A            4 TEIALIGNPNSGKTSLFNLITGHNQRVG--NWPGVTVERKSGLVKK--NKDLEIQDLPGIYSMSPYS--PEAKVARDYLL   77 (272)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCCCCCCC--SSSCCCCSCEEEECTT--CTTEEEEECCCCSCSSCSS--HHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHCCCCccc--CCCCCcEEEEEEEEec--CCeEEEEECCCcCccCCCC--hHHHHHHHHHh
Confidence            6899999999999999999999864432  4667777654444322  5678899999987643221  12223222222


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH----hcCCCCcHHHHHHHHHh--------hHHHHHhhcc-chhhhhhhhHhhHHHH
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA----ANGGQPYTDEFLAELKR--------GATELRDQQA-EVDSLKEYSKQEISKL  170 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--------~~~~l~~~~~-~i~~is~~~~~~i~~l  170 (231)
                      . ..+|++++|+|+++ .......    .....|++ .+.+++|.        ....|...++ +++.+||.+|.|++++
T Consensus        78 ~-~~~d~vi~V~D~t~-~e~~~~~~~~l~~~~~p~i-lv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el  154 (272)
T 3b1v_A           78 S-QRADSILNVVDATN-LERNLYLTTQLIETGIPVT-IALNMIDVLDGQGKKINVDKLSYHLGVPVVATSALKQTGVDQV  154 (272)
T ss_dssp             T-TCCSEEEEEEEGGG-HHHHHHHHHHHHHTCSCEE-EEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBTTTTBSHHHH
T ss_pred             c-CCCCEEEEEecCCc-hHhHHHHHHHHHhcCCCEE-EEEEChhhCCcCCcHHHHHHHHHHcCCCEEEEEccCCCCHHHH
Confidence            2 57899999999983 2111111    22344443 22233221        1124444444 7888999999999999


Q ss_pred             HHHHHHH
Q 038053          171 MGQMQES  177 (231)
Q Consensus       171 ~~~i~~~  177 (231)
                      +..+...
T Consensus       155 ~~~i~~~  161 (272)
T 3b1v_A          155 VKKAAHT  161 (272)
T ss_dssp             HHHHHHS
T ss_pred             HHHHHHH
Confidence            9988763

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.54  E-value=1.4e-15  Score=132.52  Aligned_cols=148  Identities=20%  Similarity=0.227  Sum_probs=92.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+|+|++|||||||+|.|+|...... ...+++|.+.......+ .+..+.++||||+....   +.....+......
T Consensus        24 ~~V~lvG~~nvGKSTL~n~l~~~~~~~v-~~~~g~t~~~~~~~~~~-~~~~~~liDT~G~~~~~---~~~~~~~~~~~~~   98 (456)
T 4dcu_A           24 PVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEW-LNYDFNLIDTGGIDIGD---EPFLAQIRQQAEI   98 (456)
T ss_dssp             CEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTT-CSSCCEEECCCC---------CCHHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcceeEEEEEEEE-CCceEEEEECCCCCCcc---hHHHHHHHHHHHh
Confidence            5899999999999999999999875443 35678888777666666 67789999999987422   2234455555555


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhhH--HHHHh----hccchhhhhhhhHhhHHHHHH
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRGA--TELRD----QQAEVDSLKEYSKQEISKLMG  172 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~--~~l~~----~~~~i~~is~~~~~~i~~l~~  172 (231)
                      ++..+|++++|+|..++++..+..     .....|++ .++++.|...  ..+.+    .+..++.+||.+|.|+.+++.
T Consensus        99 ~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvi-lV~NK~D~~~~~~~~~e~~~lg~~~~~~iSA~~g~gv~~L~~  177 (456)
T 4dcu_A           99 AMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVV-LAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLD  177 (456)
T ss_dssp             HHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEE-EEEECC---------CCSGGGSSSSEEECCTTTCTTHHHHHH
T ss_pred             hHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEE-EEEECccchhhhhhHHHHHHcCCCceEEeecccccchHHHHH
Confidence            667889999999998788887765     22344443 3445544211  11111    122456789999999999988


Q ss_pred             HHHHH
Q 038053          173 QMQES  177 (231)
Q Consensus       173 ~i~~~  177 (231)
                      .+...
T Consensus       178 ~i~~~  182 (456)
T 4dcu_A          178 AVAEH  182 (456)
T ss_dssp             HHHTT
T ss_pred             HHHhh
Confidence            87654

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.54  E-value=3.6e-15  Score=130.37  Aligned_cols=150  Identities=19%  Similarity=0.278  Sum_probs=99.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCc-CCCCCchHHHHHHHHHHh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF-DSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~-~~~~~~~~~~~~~~~~~~  102 (231)
                      .+|+|+|+||||||||+|.|++...... ...+++|.+........ .+..+.++||||+. ......+..+..   ...
T Consensus       244 ~kV~ivG~pnvGKSSLln~L~~~~~a~v-s~~~gTT~d~~~~~i~~-~g~~~~l~DTaG~~~~~~~~ve~~gi~---~~~  318 (482)
T 1xzp_A          244 LRMVIVGKPNVGKSTLLNRLLNEDRAIV-TDIPGTTRDVISEEIVI-RGILFRIVDTAGVRSETNDLVERLGIE---RTL  318 (482)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCC-CCSSCCSSCSCCEEEEE-TTEEEEEEESSCCCSSCCTTCCCCCHH---HHH
T ss_pred             CEEEEECcCCCcHHHHHHHHHCCCCCcc-CCCCCeeeeeEEEEEec-CCeEEEEEECCCccccchhhHHHHHHH---HHH
Confidence            7899999999999999999999865433 35667777766555655 78889999999987 543221111111   111


Q ss_pred             hhcCCccEEEEEEECCCCCCHHHHH---hcCCCCcHHHHHHHHHhh----HHHHHhhcc---chhhhhhhhHhhHHHHHH
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEEEA---ANGGQPYTDEFLAELKRG----ATELRDQQA---EVDSLKEYSKQEISKLMG  172 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~----~~~l~~~~~---~i~~is~~~~~~i~~l~~  172 (231)
                      ..+..+|++++|+|+++..+..+..   .....|.+ .++|++|..    ...+....+   +++.+|+++|.|+++++.
T Consensus       319 ~~~~~aD~vl~VvD~s~~~s~~~~~il~~l~~~pii-vV~NK~DL~~~~~~~~~~~~~~~~~~~i~iSAktg~Gi~eL~~  397 (482)
T 1xzp_A          319 QEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYL-VVINKVDVVEKINEEEIKNKLGTDRHMVKISALKGEGLEKLEE  397 (482)
T ss_dssp             HHHHHCSEEEEEEETTSCCCHHHHHHHHHHTTSSEE-EEEEECSSCCCCCHHHHHHHHTCSTTEEEEEGGGTCCHHHHHH
T ss_pred             HHhhcccEEEEEecCCCCCCHHHHHHHHHhcCCCEE-EEEECcccccccCHHHHHHHhcCCCcEEEEECCCCCCHHHHHH
Confidence            2335679999999998777665543   11233433 344554421    023332222   678899999999999999


Q ss_pred             HHHHHHH
Q 038053          173 QMQESYE  179 (231)
Q Consensus       173 ~i~~~~~  179 (231)
                      .+.+.+.
T Consensus       398 ~l~~~~~  404 (482)
T 1xzp_A          398 SIYRETQ  404 (482)
T ss_dssp             HHHHHTH
T ss_pred             HHHHHHh
Confidence            9988644

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.53  E-value=1.5e-14  Score=126.26  Aligned_cols=150  Identities=20%  Similarity=0.288  Sum_probs=81.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+|+|++|||||||+|.|++...... ...+++|.+........ .+..+.++||||+....   ..+..........
T Consensus       234 ~kV~ivG~~nvGKSSLln~L~~~~~a~v-s~~~gtT~d~~~~~i~~-~g~~l~liDT~G~~~~~---~~ve~~gi~~~~~  308 (476)
T 3gee_A          234 VSTVIAGKPNAGKSTLLNTLLGQERAIV-SHMPGTTRDYIEECFIH-DKTMFRLTDTAGLREAG---EEIEHEGIRRSRM  308 (476)
T ss_dssp             EEEEEECCTTSSHHHHHHHCC-------------------CEEEEE-TTEEEEEEC-----------------------C
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCccc-CCCCCceEEEEEEEEEE-CCeEEEEEECCCCCcch---hHHHHHHHHHHHh
Confidence            7899999999999999999999865433 24667777665555555 78889999999987532   1111222233345


Q ss_pred             hcCCccEEEEEEECCCCCCH----HHHH---hcCCCCcHHHHHHHHHhhH------HHHHhh-ccchhhhhhhhHhhHHH
Q 038053          104 AKGGIHAVLVVFSVRSRFSQ----EEEA---ANGGQPYTDEFLAELKRGA------TELRDQ-QAEVDSLKEYSKQEISK  169 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~----~~~~---~~~~~~~~~~~~~~~~~~~------~~l~~~-~~~i~~is~~~~~~i~~  169 (231)
                      .+..+|++++|+|+++..+.    .+..   .....|++ .++|+.|...      ..+.+. ..+++.+|+++|.|+++
T Consensus       309 ~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~~piI-vV~NK~Dl~~~~~~~~~~l~~~~~~~~i~vSAktg~GI~e  387 (476)
T 3gee_A          309 KMAEADLILYLLDLGTERLDDELTEIRELKAAHPAAKFL-TVANKLDRAANADALIRAIADGTGTEVIGISALNGDGIDT  387 (476)
T ss_dssp             CCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCTTSEEE-EEEECTTSCTTTHHHHHHHHHHHTSCEEECBTTTTBSHHH
T ss_pred             hcccCCEEEEEEECCCCcchhhhHHHHHHHHhcCCCCEE-EEEECcCCCCccchhHHHHHhcCCCceEEEEECCCCCHHH
Confidence            56889999999999977665    2222   11233333 3445544211      123332 34678899999999999


Q ss_pred             HHHHHHHHHH
Q 038053          170 LMGQMQESYE  179 (231)
Q Consensus       170 l~~~i~~~~~  179 (231)
                      ++..+.+.+.
T Consensus       388 L~~~i~~~~~  397 (476)
T 3gee_A          388 LKQHMGDLVK  397 (476)
T ss_dssp             HHHHHTHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999988765

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.53  E-value=2e-13  Score=102.60  Aligned_cols=146  Identities=18%  Similarity=0.251  Sum_probs=86.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+|+|++|||||||+|.|+|......  ..+++|.+........ .+..+.++||||........  ..+.+...+..
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~--~~~~~~~~~~~   78 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGENVYIG--NWPGVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANS--IDEIIARDYII   78 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCCSSSCC-------CCCCCEEEEEE-TTEEEEEEECCCCSCSSSSS--HHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCeecc--CCCCcceeeeEEEEEE-CCcEEEEEECCCcccCCCcc--hhHHHHHHHHh
Confidence            6899999999999999999999764322  3345555444444444 56788999999987643221  11222222221


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH----hcCCCCcHHHHHHHHHhh--------HHHHHhhcc-chhhhhhhhHhhHHHH
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA----ANGGQPYTDEFLAELKRG--------ATELRDQQA-EVDSLKEYSKQEISKL  170 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--------~~~l~~~~~-~i~~is~~~~~~i~~l  170 (231)
                      . ..+|++++++|+++ +......    .....|.+ .+.++.|..        ...+....+ +++.+||++|.|++++
T Consensus        79 ~-~~~~~~i~v~D~~~-~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~v~~l  155 (165)
T 2wji_A           79 N-EKPDLVVNIVDATA-LERNLYLTLQLMEMGANLL-LALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEEL  155 (165)
T ss_dssp             H-HCCSEEEEEEETTC-HHHHHHHHHHHHHTTCCEE-EEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHH
T ss_pred             c-CCCCEEEEEecCCc-hhHhHHHHHHHHhcCCCEE-EEEEchHhccccChhhHHHHHHHHhCCCEEEEEcCCCCCHHHH
Confidence            1 36799999999984 2211111    12234443 223333311        123333333 6778999999999999


Q ss_pred             HHHHHHH
Q 038053          171 MGQMQES  177 (231)
Q Consensus       171 ~~~i~~~  177 (231)
                      +..+...
T Consensus       156 ~~~l~~~  162 (165)
T 2wji_A          156 KKAISIA  162 (165)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9887653

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.53  E-value=1.8e-13  Score=105.17  Aligned_cols=150  Identities=18%  Similarity=0.224  Sum_probs=86.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCC-ccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCch--HHHHHHH
Q 038053           22 GKRTVVLLGRTGNGKSATGNSILGRK-AFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSE--FVGKEIV   98 (231)
Q Consensus        22 ~~~~i~lvG~~g~GKSTLin~l~g~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~--~~~~~~~   98 (231)
                      ...+|+++|.+|+|||||+|.|++.. .... ...++.|.......    .+..+.++||||+........  .....+.
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~t~~~~~~~----~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   96 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFINSLINRKNLART-SSKPGKTQTLNFYI----INDELHFVDVPGYGFAKVSKSEREAWGRMI   96 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC--------------CCEEEEE----ETTTEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCcccc-CCCCCceeeEEEEE----ECCcEEEEECCCCCccccCHHHHHHHHHHH
Confidence            34899999999999999999999986 2222 23444554433222    133688999999765432211  1111122


Q ss_pred             HHHhhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhh----H----HHHHhhc-----cchhhhh
Q 038053           99 KRIGLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRG----A----TELRDQQ-----AEVDSLK  160 (231)
Q Consensus        99 ~~~~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~----~----~~l~~~~-----~~i~~is  160 (231)
                      ..+......+|++++|+|+++..+..+..     .....|++ .++++.|..    .    ..+.+.+     .+++.+|
T Consensus        97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i-~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  175 (195)
T 1svi_A           97 ETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVI-VIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFS  175 (195)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEE-EEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECC
T ss_pred             HHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEE
Confidence            22333335669999999998777776643     12233433 223333210    0    1233222     2677899


Q ss_pred             hhhHhhHHHHHHHHHHH
Q 038053          161 EYSKQEISKLMGQMQES  177 (231)
Q Consensus       161 ~~~~~~i~~l~~~i~~~  177 (231)
                      ++++.|+++++..+.+.
T Consensus       176 a~~~~gv~~l~~~l~~~  192 (195)
T 1svi_A          176 SETKKGKDEAWGAIKKM  192 (195)
T ss_dssp             TTTCTTHHHHHHHHHHH
T ss_pred             ccCCCCHHHHHHHHHHH
Confidence            99999999999887664

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.52  E-value=2.2e-13  Score=104.39  Aligned_cols=150  Identities=18%  Similarity=0.227  Sum_probs=91.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCch--HHHHHHHHH
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSE--FVGKEIVKR  100 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~--~~~~~~~~~  100 (231)
                      ..+|+++|.+|||||||+|.|++...... ....+.|.......    .+..+.++||||+........  .....+...
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~t~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~   97 (195)
T 3pqc_A           23 KGEVAFVGRSNVGKSSLLNALFNRKIAFV-SKTPGKTRSINFYL----VNSKYYFVDLPGYGYAKVSKKERMLWKRLVED   97 (195)
T ss_dssp             TCEEEEEEBTTSSHHHHHHHHHTSCCSCC-CSSCCCCCCEEEEE----ETTTEEEEECCCBSSSCCCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCccccc-cCCCCCccCeEEEE----ECCcEEEEECCCCccccCChhhHHHHHHHHHH
Confidence            37999999999999999999999874333 23444454333221    244577999999765322111  112223333


Q ss_pred             HhhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhh----H----HHHHhhc---c--chhhhhhh
Q 038053          101 IGLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRG----A----TELRDQQ---A--EVDSLKEY  162 (231)
Q Consensus       101 ~~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~----~----~~l~~~~---~--~i~~is~~  162 (231)
                      +......+|++++|+|+++..+..+..     .....|++ .+.++.|..    .    +.+....   .  +++.+|++
T Consensus        98 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i-~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  176 (195)
T 3pqc_A           98 YFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFT-IVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSV  176 (195)
T ss_dssp             HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEE-EEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTT
T ss_pred             HHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEE-EEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecC
Confidence            334446779999999998776665543     22233433 233333310    0    1222222   2  67789999


Q ss_pred             hHhhHHHHHHHHHHHH
Q 038053          163 SKQEISKLMGQMQESY  178 (231)
Q Consensus       163 ~~~~i~~l~~~i~~~~  178 (231)
                      ++.|+++++..+.+..
T Consensus       177 ~~~gv~~l~~~l~~~l  192 (195)
T 3pqc_A          177 TGEGISELLDLISTLL  192 (195)
T ss_dssp             TCTTHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999998887654

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.50  E-value=7.3e-15  Score=127.86  Aligned_cols=150  Identities=21%  Similarity=0.223  Sum_probs=92.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+|+|++|+|||||+|.|++...... ...+++|.+........ .+..+.++||||+.+...   .+..........
T Consensus       225 ~kV~ivG~~nvGKSSLln~L~~~~~a~v-~~~~gtT~d~~~~~i~~-~g~~v~liDT~G~~~~~~---~ve~~gi~~~~~  299 (462)
T 3geh_A          225 LKVAIVGRPNVGKSSLLNAWSQSDRAIV-TDLPGTTRDVVESQLVV-GGIPVQVLDTAGIRETSD---QVEKIGVERSRQ  299 (462)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHBSCC-SCCTTCCHHHHHHEEEE-TTEEEEECC-----------------------C
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCCCcccc-cCCCCeeEEEEEEEEEE-CCEEEEEEECCccccchh---HHHHHHHHHHhh
Confidence            7899999999999999999999765433 24566776654444444 788899999999865321   111111233344


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH---hcCCCCcHHHHHHHHHhhH-HH---HHh--hccchhhhhhhhHhhHHHHHHHH
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA---ANGGQPYTDEFLAELKRGA-TE---LRD--QQAEVDSLKEYSKQEISKLMGQM  174 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~---l~~--~~~~i~~is~~~~~~i~~l~~~i  174 (231)
                      .+..+|++++|+|+++.++..+..   .....|.+ .++|+.|... ..   +..  ...+++.+|+++|.|+++++..+
T Consensus       300 ~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~~pii-vV~NK~Dl~~~~~~~~~~~~~~~~~~i~iSAktg~Gi~eL~~~i  378 (462)
T 3geh_A          300 AANTADLVLLTIDAATGWTTGDQEIYEQVKHRPLI-LVMNKIDLVEKQLITSLEYPENITQIVHTAAAQKQGIDSLETAI  378 (462)
T ss_dssp             CCCSCSEEEEEEETTTCSCHHHHHHHHHHTTSCEE-EEEECTTSSCGGGSTTCCCCTTCCCEEEEBTTTTBSHHHHHHHH
T ss_pred             hhhcCCEEEEEeccCCCCCHHHHHHHHhccCCcEE-EEEECCCCCcchhhHHHHHhccCCcEEEEECCCCCCHHHHHHHH
Confidence            567899999999999888776644   11223443 4556655211 01   111  11257789999999999999999


Q ss_pred             HHHHH
Q 038053          175 QESYE  179 (231)
Q Consensus       175 ~~~~~  179 (231)
                      .+.+.
T Consensus       379 ~~~~~  383 (462)
T 3geh_A          379 LEIVQ  383 (462)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            88654

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.50  E-value=7.1e-14  Score=106.86  Aligned_cols=151  Identities=19%  Similarity=0.252  Sum_probs=92.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+|+|++|||||||+|.|++......  ..+++|.+........ .+..+.++||||........  ....+...+..
T Consensus         8 ~~i~lvG~~gvGKStL~~~l~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~--~~~~~~~~~~~   82 (188)
T 2wjg_A            8 YEIALIGNPNVGKSTIFNALTGENVYIG--NWPGVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANS--IDEIIARDYII   82 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTTCEEEE--ECTTSCCEEEEEEEEE-TTEEEEEEECCCCSCCSSSS--HHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCcccc--CCCCeeccceEEEEEe-CCcEEEEEECCCcCcccccc--HHHHHHHHHHh
Confidence            6999999999999999999999764332  3455666555555555 67889999999987643211  11122222211


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH----hcCCCCcHHHHHHHHHhh--------HHHHHhhcc-chhhhhhhhHhhHHHH
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA----ANGGQPYTDEFLAELKRG--------ATELRDQQA-EVDSLKEYSKQEISKL  170 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--------~~~l~~~~~-~i~~is~~~~~~i~~l  170 (231)
                      . ..+|++++++|.++ +......    .....|++ .+.++.|..        ...+....+ +++.+|++++.|++++
T Consensus        83 ~-~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l  159 (188)
T 2wjg_A           83 N-EKPDLVVNIVDATA-LERNLYLTLQLMEMGANLL-LALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEEL  159 (188)
T ss_dssp             H-HCCSEEEEEEEGGG-HHHHHHHHHHHHTTTCCEE-EEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHH
T ss_pred             c-cCCCEEEEEecchh-HHHHHHHHHHHHhcCCCEE-EEEEhhhccccccchHHHHHHHHHhCCCeEEEEecCCCCHHHH
Confidence            1 35789999999873 2211111    22334443 223333311        123333333 6778999999999999


Q ss_pred             HHHHHHHHHHHH
Q 038053          171 MGQMQESYEDQI  182 (231)
Q Consensus       171 ~~~i~~~~~~~~  182 (231)
                      +..+.....+..
T Consensus       160 ~~~i~~~~~~~~  171 (188)
T 2wjg_A          160 KKAISIAVKDKK  171 (188)
T ss_dssp             HHHHHHHHTTC-
T ss_pred             HHHHHHHHHhcc
Confidence            999887665544

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.49  E-value=9.3e-14  Score=103.28  Aligned_cols=146  Identities=21%  Similarity=0.269  Sum_probs=88.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+++|.+|+|||||+|.+++...... ...+++|.......... .+..+.++||||.......    ...+......
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~----~~~~~~~~~~   75 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVV-ADVPGVTRDLKEGVVET-DRGRFLLVDTGGLWSGDKW----EKKIQEKVDR   75 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC------------CCEEEEEEE-TTEEEEEEECGGGCSSSSC----CHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeec-cCCCCceecceEEEEEe-CCceEEEEECCCCCCccch----HHHHHHHHHH
Confidence            5899999999999999999998764222 23444554444444444 6778899999998764321    1223333344


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhhH-----HHHHhh-ccchhhhhhhhHhhHHHHHH
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRGA-----TELRDQ-QAEVDSLKEYSKQEISKLMG  172 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-----~~l~~~-~~~i~~is~~~~~~i~~l~~  172 (231)
                      .+..+|++++++|.++.++..+..     .....|++ .+.++.|...     .++... ..+++.+|++++.|+++++.
T Consensus        76 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  154 (161)
T 2dyk_A           76 ALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVI-LVATKVDDPKHELYLGPLYGLGFGDPIPTSSEHARGLEELLE  154 (161)
T ss_dssp             HTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEE-EEEECCCSGGGGGGCGGGGGGSSCSCEECBTTTTBSHHHHHH
T ss_pred             HHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEE-EEEECcccccchHhHHHHHhCCCCCeEEEecccCCChHHHHH
Confidence            557889999999998777765533     11223332 2333333110     122211 12677899999999999988


Q ss_pred             HHHH
Q 038053          173 QMQE  176 (231)
Q Consensus       173 ~i~~  176 (231)
                      .+.+
T Consensus       155 ~l~~  158 (161)
T 2dyk_A          155 AIWE  158 (161)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8765

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.46  E-value=2.9e-13  Score=102.38  Aligned_cols=141  Identities=15%  Similarity=0.207  Sum_probs=89.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+++|.+|||||||+|.+++......  ..++.+.......... .+..+.++||||.......           ...
T Consensus         9 ~~i~v~G~~~~GKssl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~-----------~~~   74 (178)
T 2lkc_A            9 PVVTIMGHVDHGKTTLLDAIRHSKVTEQ--EAGGITQHIGAYQVTV-NDKKITFLDTPGHEAFTTM-----------RAR   74 (178)
T ss_dssp             CEEEEESCTTTTHHHHHHHHHTTCSSCS--SCCSSSTTCCCCEEEE-TTEEEEESCCCSSSSSSCS-----------CCS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCccccC--CCCceeEeeeEEEEEe-CCceEEEEECCCCHHHHHH-----------HHH
Confidence            7999999999999999999998764321  2333443333333334 6778889999997653321           123


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhhH-------HHHHhh------c---cchhhhhhh
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRGA-------TELRDQ------Q---AEVDSLKEY  162 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-------~~l~~~------~---~~i~~is~~  162 (231)
                      .+..+|++++|+|+++........     .....|++ .+.++.|...       ..+...      .   .+++.+||+
T Consensus        75 ~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~i-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  153 (178)
T 2lkc_A           75 GAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPII-VAINKMDKPEANPDRVMQELMEYNLVPEEWGGDTIFCKLSAK  153 (178)
T ss_dssp             SCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEE-EEEETTTSSCSCHHHHHHHHTTTTCCBTTTTSSEEEEECCSS
T ss_pred             HHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEE-EEEECccCCcCCHHHHHHHHHhcCcChhHcCCcccEEEEecC
Confidence            457889999999998665554433     12233333 3334433110       112111      1   156779999


Q ss_pred             hHhhHHHHHHHHHHHHH
Q 038053          163 SKQEISKLMGQMQESYE  179 (231)
Q Consensus       163 ~~~~i~~l~~~i~~~~~  179 (231)
                      +|.|+++++..+.....
T Consensus       154 ~~~gv~~l~~~l~~~~~  170 (178)
T 2lkc_A          154 TKEGLDHLLEMILLVSE  170 (178)
T ss_dssp             SSHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhhh
Confidence            99999999988877543

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.46  E-value=6e-12  Score=99.46  Aligned_cols=151  Identities=15%  Similarity=0.127  Sum_probs=88.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCch-HHHHHHHHHH
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSE-FVGKEIVKRI  101 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~-~~~~~~~~~~  101 (231)
                      ..+|+|+|.+|||||||+|.|++......  ..+++|.......... .+..+.++||||+.+...... ......   +
T Consensus        29 ~~kI~vvG~~~vGKSsLin~l~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~~~~---~  102 (228)
T 2qu8_A           29 KKTIILSGAPNVGKSSFMNIVSRANVDVQ--SYSFTTKNLYVGHFDH-KLNKYQIIDTPGLLDRAFENRNTIEMTT---I  102 (228)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHTTTCEEEE--CC-----CEEEEEEEE-TTEEEEEEECTTTTTSCGGGCCHHHHHH---H
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCccC--CCCCcceeeeeeeeec-CCCeEEEEECCCCcCcccchhhhHHHHH---H
Confidence            38999999999999999999999865321  3444555444444443 567889999999965321111 111111   1


Q ss_pred             hhhcCCccEEEEEEECCCCCCH--H-HHH-----hcC--CCCcHHHHHHHHHhh------------HHHHHhhc---cch
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQ--E-EEA-----ANG--GQPYTDEFLAELKRG------------ATELRDQQ---AEV  156 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~--~-~~~-----~~~--~~~~~~~~~~~~~~~------------~~~l~~~~---~~i  156 (231)
                      ......+|++++|+|+++..+.  . ...     ...  ..|++ .+.++.|..            ...+....   .++
T Consensus       103 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (228)
T 2qu8_A          103 TALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIV-IGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKF  181 (228)
T ss_dssp             HHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEE-EEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEE
T ss_pred             HHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEE-EEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceE
Confidence            1224677999999999865331  1 111     111  34443 333443310            01222222   357


Q ss_pred             hhhhhhhHhhHHHHHHHHHHHHHH
Q 038053          157 DSLKEYSKQEISKLMGQMQESYED  180 (231)
Q Consensus       157 ~~is~~~~~~i~~l~~~i~~~~~~  180 (231)
                      +.+||++|.|+++++..+...+..
T Consensus       182 ~~~SA~~g~gi~~l~~~l~~~i~~  205 (228)
T 2qu8_A          182 SSFSTLTGVGVEQAKITACELLKN  205 (228)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             EEEecccCCCHHHHHHHHHHHHHH
Confidence            789999999999999988776543

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.46  E-value=7e-12  Score=105.88  Aligned_cols=152  Identities=17%  Similarity=0.178  Sum_probs=93.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCc-hHHHHHHHHHHh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGS-EFVGKEIVKRIG  102 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~-~~~~~~~~~~~~  102 (231)
                      .+|+++|+||||||||+|.|+|......  ..++.|.......... .+..+.++||||+....... .....   ..+.
T Consensus       168 ~~v~lvG~~gvGKSTLin~L~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~---~~~~  241 (357)
T 2e87_A          168 PTVVIAGHPNVGKSTLLKALTTAKPEIA--SYPFTTRGINVGQFED-GYFRYQIIDTPGLLDRPISERNEIEK---QAIL  241 (357)
T ss_dssp             CEEEEECSTTSSHHHHHHHHCSSCCEEE--CCTTCSSCEEEEEEEE-TTEEEEEEECTTTSSSCSTTSCHHHH---HHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCccC--CCCCeeeceeEEEEEe-cCceEEEEeCCCccccchhhhhHHHH---HHHH
Confidence            7999999999999999999999874322  3445555555444444 56788999999986532211 11111   1222


Q ss_pred             hhcCCccEEEEEEECCCC--CCHHHHH-------h-cCCCCcHHHHHHHHHhhH----HHHH----hhccchhhhhhhhH
Q 038053          103 LAKGGIHAVLVVFSVRSR--FSQEEEA-------A-NGGQPYTDEFLAELKRGA----TELR----DQQAEVDSLKEYSK  164 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~--~~~~~~~-------~-~~~~~~~~~~~~~~~~~~----~~l~----~~~~~i~~is~~~~  164 (231)
                      .....+|.+++|+|+++.  ++.....       . ....|.+ .+.|+.|...    ..+.    ....+++.+||.+|
T Consensus       242 ~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~pii-lV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g  320 (357)
T 2e87_A          242 ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFL-VVINKIDVADEENIKRLEKFVKEKGLNPIKISALKG  320 (357)
T ss_dssp             GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEE-EEECCTTTCCHHHHHHHHHHHHHTTCCCEECBTTTT
T ss_pred             HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEE-EEEECcccCChHHHHHHHHHHHhcCCCeEEEeCCCC
Confidence            233468999999998743  2443322       1 1234443 2333333110    1111    11226788999999


Q ss_pred             hhHHHHHHHHHHHHHHHH
Q 038053          165 QEISKLMGQMQESYEDQI  182 (231)
Q Consensus       165 ~~i~~l~~~i~~~~~~~~  182 (231)
                      .|+++++..+.+......
T Consensus       321 ~gi~~l~~~i~~~l~~~~  338 (357)
T 2e87_A          321 TGIDLVKEEIIKTLRPLA  338 (357)
T ss_dssp             BTHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHH
Confidence            999999999888765444

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.45  E-value=5e-13  Score=121.86  Aligned_cols=28  Identities=25%  Similarity=0.436  Sum_probs=25.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccc
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKA   51 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~   51 (231)
                      .+|+++|.+|+|||||+|+|+|......
T Consensus        70 ~~V~VvG~~naGKSSLlNaLlg~~~~~v   97 (695)
T 2j69_A           70 FRLLVLGDMKRGKSTFLNALIGENLLPS   97 (695)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHTSSCSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence            8999999999999999999999876543

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.45  E-value=2.6e-14  Score=119.87  Aligned_cols=148  Identities=16%  Similarity=0.195  Sum_probs=95.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      ..|+|+|.+|||||||+|+|++.....  ...+.+|...............+.++||||+.........+...++..+  
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~i--~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i--  234 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPKI--ADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHI--  234 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEE--SSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHH--
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCcc--ccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHH--
Confidence            369999999999999999999876432  2455566666655555523478999999998653333333445554443  


Q ss_pred             hcCCccEEEEEEECCC---CCCHHHHH--------h---cCCCCcHHHHHHHHHhh-----HHHHHhhcc---chhhhhh
Q 038053          104 AKGGIHAVLVVFSVRS---RFSQEEEA--------A---NGGQPYTDEFLAELKRG-----ATELRDQQA---EVDSLKE  161 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~---~~~~~~~~--------~---~~~~~~~~~~~~~~~~~-----~~~l~~~~~---~i~~is~  161 (231)
                        .+++++++|+|+++   +-...+..        .   ....|++ .++|++|..     ...+.+.+.   +++.+|+
T Consensus       235 --~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~i-lV~NK~Dl~~~~e~~~~l~~~l~~~~~v~~iSA  311 (342)
T 1lnz_A          235 --ERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQI-IVANKMDMPEAAENLEAFKEKLTDDYPVFPISA  311 (342)
T ss_dssp             --HHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBC-BEEECTTSTTHHHHHHHHHHHCCSCCCBCCCSS
T ss_pred             --HhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEE-EEEECccCCCCHHHHHHHHHHhhcCCCEEEEEC
Confidence              45699999999974   22222211        1   1234443 444554421     123444443   6788999


Q ss_pred             hhHhhHHHHHHHHHHHH
Q 038053          162 YSKQEISKLMGQMQESY  178 (231)
Q Consensus       162 ~~~~~i~~l~~~i~~~~  178 (231)
                      .++.|+++++..+.+.+
T Consensus       312 ~tg~gi~eL~~~l~~~l  328 (342)
T 1lnz_A          312 VTREGLRELLFEVANQL  328 (342)
T ss_dssp             CCSSTTHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHH
Confidence            99999999999887754

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.45  E-value=5.2e-13  Score=103.93  Aligned_cols=167  Identities=17%  Similarity=0.206  Sum_probs=88.0

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCC-ccccccCCCCcceeeeeeeEEeeCCcEEEEEeC
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRK-AFKASADSSGVTKTCEMKTTVLKDGQVVNVIDT   80 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dt   80 (231)
                      ++.|+. .++++  +.+.+|  .+|+|+|+||||||||+|.|+|.. ..... ...+.|....  .... .+ ...++||
T Consensus        10 ~~~~~~-~~l~~--~~~~~~--~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~-~~~G~~~~~~--~~~~-~~-~~~l~Dt   79 (210)
T 1pui_A           10 HFVMSA-PDIRH--LPSDTG--IEVAFAGRSNAGKSSALNTLTNQKSLARTS-KTPGRTQLIN--LFEV-AD-GKRLVDL   79 (210)
T ss_dssp             -CEEEE-SSGGG--SSCSCS--EEEEEEECTTSSHHHHHTTTCCC--------------CCEE--EEEE-ET-TEEEEEC
T ss_pred             hheeec-CCHhH--CCCCCC--cEEEEECCCCCCHHHHHHHHhCCCcccccc-CCCccceeeE--EEEe-cC-CEEEEEC
Confidence            455653 56666  888999  999999999999999999999987 22111 2334443222  1222 22 4668999


Q ss_pred             CCCcCCCCCch--HHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcH-----HHHHHHHHh-h-H
Q 038053           81 PGLFDSSAGSE--FVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYT-----DEFLAELKR-G-A  146 (231)
Q Consensus        81 pg~~~~~~~~~--~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~-----~~~~~~~~~-~-~  146 (231)
                      ||+........  .........+......++.+++++|+....+..+..     .....+..     .+..+...+ . .
T Consensus        80 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~  159 (210)
T 1pui_A           80 PGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQL  159 (210)
T ss_dssp             CCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHH
T ss_pred             cCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHH
Confidence            99864211111  011112222222336789999999998666654322     11222221     112111000 0 0


Q ss_pred             HHHHhh---c---cchhhhhhhhHhhHHHHHHHHHHHH
Q 038053          147 TELRDQ---Q---AEVDSLKEYSKQEISKLMGQMQESY  178 (231)
Q Consensus       147 ~~l~~~---~---~~i~~is~~~~~~i~~l~~~i~~~~  178 (231)
                      ..+...   .   -.+.++|+.++.++++++..+.+..
T Consensus       160 ~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~  197 (210)
T 1pui_A          160 NMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF  197 (210)
T ss_dssp             HHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence            111111   1   1456789999999999988876643

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.45  E-value=8.4e-14  Score=107.17  Aligned_cols=147  Identities=10%  Similarity=0.043  Sum_probs=83.3

Q ss_pred             ccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCC
Q 038053            9 VIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSA   88 (231)
Q Consensus         9 ~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~   88 (231)
                      .+++++++..+..   +|+++|++|||||||+|.+++......     ..|.......... .+..+.++||||......
T Consensus        12 ~~l~~~~~~~~~~---ki~~vG~~~vGKSsli~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~   82 (190)
T 1m2o_B           12 DVLASLGLWNKHG---KLLFLGLDNAGKTTLLHMLKNDRLATL-----QPTWHPTSEELAI-GNIKFTTFDLGGHIQARR   82 (190)
T ss_dssp             ------------C---EEEEEESTTSSHHHHHHHHHHSCCCCC-----CCCCSCEEEEEEE-TTEEEEEEECCCSGGGTT
T ss_pred             HHHHHhhccCCcc---EEEEECCCCCCHHHHHHHHhcCCCCcc-----ccCCCCCeEEEEE-CCEEEEEEECCCCHHHHH
Confidence            3567777776664   999999999999999999998754221     1122222333444 668889999999764221


Q ss_pred             CchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH----------hcCCCCcHHHHHHHHHhh----HHHHHhhc-
Q 038053           89 GSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA----------ANGGQPYTDEFLAELKRG----ATELRDQQ-  153 (231)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~----~~~l~~~~-  153 (231)
                                 .....+..+|++++|+|++++-+.....          .....|++ .+.++.|..    .+++.+.+ 
T Consensus        83 -----------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-lv~NK~Dl~~~~~~~~~~~~~~  150 (190)
T 1m2o_B           83 -----------LWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFV-ILGNKIDAPNAVSEAELRSALG  150 (190)
T ss_dssp             -----------SGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEE-EEEECTTSTTCCCHHHHHHHTT
T ss_pred             -----------HHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEE-EEEECCCCcCCCCHHHHHHHhC
Confidence                       1123456889999999998543322211          11233433 334443321    12232221 


Q ss_pred             ---------------cchhhhhhhhHhhHHHHHHHHHH
Q 038053          154 ---------------AEVDSLKEYSKQEISKLMGQMQE  176 (231)
Q Consensus       154 ---------------~~i~~is~~~~~~i~~l~~~i~~  176 (231)
                                     .+++.+|+++|.|+++++..+.+
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~  188 (190)
T 1m2o_B          151 LLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ  188 (190)
T ss_dssp             CSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred             CccccccccccccceEEEEEeECCcCCCHHHHHHHHHh
Confidence                           14677999999999999887653

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.44  E-value=7.4e-13  Score=107.84  Aligned_cols=156  Identities=15%  Similarity=0.200  Sum_probs=74.9

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccC------CCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCc
Q 038053           19 SSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASAD------SSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGS   90 (231)
Q Consensus        19 ~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~------~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~   90 (231)
                      .+|...+|+++|.+|+|||||+|+|++...+.....      .++++.......... .+  ..+.++||||+.+.....
T Consensus         4 ~~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~liDTpG~~d~~~~~   82 (274)
T 3t5d_A            4 GSGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKE-GGVQLLLTIVDTPGFGDAVDNS   82 (274)
T ss_dssp             ---CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC---CCEEEEEEECCCCSCCSCCT
T ss_pred             cCccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEec-CCeEEEEEEEECCCccccccch
Confidence            345457999999999999999999999887544210      122222222222222 22  378999999996543221


Q ss_pred             ---hHHH----HHHHHHHhh---------hcCCccEEEEEEECCC-CCCHHHHH----hcCCCCcHHHHHHHHHhhH---
Q 038053           91 ---EFVG----KEIVKRIGL---------AKGGIHAVLVVFSVRS-RFSQEEEA----ANGGQPYTDEFLAELKRGA---  146 (231)
Q Consensus        91 ---~~~~----~~~~~~~~~---------~~~~~~~il~vvd~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~---  146 (231)
                         ..+.    ..+..++..         ...++|+++++++.+. .+...+..    .....|.+ .+++++|...   
T Consensus        83 ~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~~~pvi-~V~nK~D~~~~~e  161 (274)
T 3t5d_A           83 NCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNII-PLIAKADTLTPEE  161 (274)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTTTSCEE-EEESSGGGSCHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhccCCEE-EEEeccCCCCHHH
Confidence               2222    111222221         1135789999997763 67777655    22234443 3444444110   


Q ss_pred             -----HHHHhhcc----chhhhhhhhHhhHHHHHHHHHH
Q 038053          147 -----TELRDQQA----EVDSLKEYSKQEISKLMGQMQE  176 (231)
Q Consensus       147 -----~~l~~~~~----~i~~is~~~~~~i~~l~~~i~~  176 (231)
                           ..+.+.+.    +++.+|+.++.++.++...+.+
T Consensus       162 ~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~  200 (274)
T 3t5d_A          162 CQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKD  200 (274)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCCC-----------CHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhc
Confidence                 12222221    5677899999999988887765

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.44  E-value=3.4e-13  Score=115.71  Aligned_cols=160  Identities=14%  Similarity=0.116  Sum_probs=97.7

Q ss_pred             CCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCc
Q 038053           11 DGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGS   90 (231)
Q Consensus        11 ~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~   90 (231)
                      .++++++++.+  ..|+|+|+||||||||+|+|++......  ..+.+|...............+.+.|+||+.+.....
T Consensus       147 ~~~i~lelk~g--~~VgLVG~~gAGKSTLL~~Lsg~~~~i~--~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~  222 (416)
T 1udx_A          147 KRRLRLELMLI--ADVGLVGYPNAGKSSLLAAMTRAHPKIA--PYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEG  222 (416)
T ss_dssp             EEEEEEEECCS--CSEEEECCGGGCHHHHHHHHCSSCCEEC--CCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGS
T ss_pred             EeeeeeEEcCC--CEEEEECCCCCcHHHHHHHHHcCCcccc--CcccceecceeeEEEecCcceEEEEeccccccchhhh
Confidence            35788999999  8999999999999999999999865332  3444555555555554223778899999997532211


Q ss_pred             hHHHHHHHHHHhhhcCCccEEEEEEECC-CCCCHHHH---H---h---cCCCCcHHHHHHHHHhh----HHHHHhhc---
Q 038053           91 EFVGKEIVKRIGLAKGGIHAVLVVFSVR-SRFSQEEE---A---A---NGGQPYTDEFLAELKRG----ATELRDQQ---  153 (231)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~il~vvd~~-~~~~~~~~---~---~---~~~~~~~~~~~~~~~~~----~~~l~~~~---  153 (231)
                      ..+...+..    ...+++.+++++|++ +.+.....   +   .   ....|.+ .+++++|..    ...+...+   
T Consensus       223 ~~L~~~fl~----~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~I-LVlNKlDl~~~~~~~~l~~~l~~~  297 (416)
T 1udx_A          223 KGLGLEFLR----HIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSL-VALNKVDLLEEEAVKALADALARE  297 (416)
T ss_dssp             CCSCHHHHH----HHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEE-EEEECCTTSCHHHHHHHHHHHHTT
T ss_pred             hhhhHHHHH----HHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEE-EEEECCChhhHHHHHHHHHHHHhc
Confidence            112222222    236789999999996 11111110   0   0   0112222 111222210    01222222   


Q ss_pred             -cchhhhhhhhHhhHHHHHHHHHHHHH
Q 038053          154 -AEVDSLKEYSKQEISKLMGQMQESYE  179 (231)
Q Consensus       154 -~~i~~is~~~~~~i~~l~~~i~~~~~  179 (231)
                       .+++.+||.++.++++++..+.+.+.
T Consensus       298 g~~vi~iSA~~g~gi~eL~~~i~~~l~  324 (416)
T 1udx_A          298 GLAVLPVSALTGAGLPALKEALHALVR  324 (416)
T ss_dssp             TSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCccCHHHHHHHHHHHHH
Confidence             26788999999999999999887654

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.43  E-value=3.3e-14  Score=110.20  Aligned_cols=147  Identities=13%  Similarity=0.070  Sum_probs=86.1

Q ss_pred             ccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCC
Q 038053            9 VIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSA   88 (231)
Q Consensus         9 ~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~   88 (231)
                      .+++++++..+.   .+|+++|++|||||||+|.+++.......+ ..+.+    ...... .+..+.++||||......
T Consensus        14 ~~l~~~~~~~~~---~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~-t~~~~----~~~~~~-~~~~l~i~Dt~G~~~~~~   84 (198)
T 1f6b_A           14 SVLQFLGLYKKT---GKLVFLGLDNAGKTTLLHMLKDDRLGQHVP-TLHPT----SEELTI-AGMTFTTFDLGGHIQARR   84 (198)
T ss_dssp             HHHHHHTCTTCC---EEEEEEEETTSSHHHHHHHHSCC------C-CCCCS----CEEEEE-TTEEEEEEEECC----CC
T ss_pred             HHHHHhhccCCC---cEEEEECCCCCCHHHHHHHHhcCCCCccCC-CCCce----eEEEEE-CCEEEEEEECCCcHhhHH
Confidence            567777777766   489999999999999999999876422211 11112    223333 567889999999654221


Q ss_pred             CchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH------h----cCCCCcHHHHHHHHHhh----HHHHHhhc-
Q 038053           89 GSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA------A----NGGQPYTDEFLAELKRG----ATELRDQQ-  153 (231)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~------~----~~~~~~~~~~~~~~~~~----~~~l~~~~-  153 (231)
                                 .....+..+|++++|+|+++.-+.....      .    ....|++ .+.++.|..    .+++.+.+ 
T Consensus        85 -----------~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~pii-lv~NK~Dl~~~~~~~~~~~~~~  152 (198)
T 1f6b_A           85 -----------VWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPIL-ILGNKIDRPEAISEERLREMFG  152 (198)
T ss_dssp             -----------GGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEE-EEEECTTSTTCCCHHHHHHHHT
T ss_pred             -----------HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEE-EEEECCCccccCCHHHHHHHhC
Confidence                       1123346789999999998543222211      1    1233443 333443321    01222211 


Q ss_pred             --------------------cchhhhhhhhHhhHHHHHHHHHH
Q 038053          154 --------------------AEVDSLKEYSKQEISKLMGQMQE  176 (231)
Q Consensus       154 --------------------~~i~~is~~~~~~i~~l~~~i~~  176 (231)
                                          .+++.+||++|.|+++++..+.+
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~  195 (198)
T 1f6b_A          153 LYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQ  195 (198)
T ss_dssp             CTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred             cccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHH
Confidence                                15677999999999999887754

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.43  E-value=4.2e-13  Score=103.32  Aligned_cols=142  Identities=15%  Similarity=0.098  Sum_probs=86.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           22 GKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        22 ~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      ...+|+|+|.+|||||||+|.|++......   ....|.......... ....+.++||||.....           ...
T Consensus        16 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~---~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~-----------~~~   80 (199)
T 4bas_A           16 TKLQVVMCGLDNSGKTTIINQVKPAQSSSK---HITATVGYNVETFEK-GRVAFTVFDMGGAKKFR-----------GLW   80 (199)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHSCCC-------CCCCCSSEEEEEEEE-TTEEEEEEEECCSGGGG-----------GGG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCccc---ccccccceeEEEEEe-CCEEEEEEECCCCHhHH-----------HHH
Confidence            347999999999999999999999875321   111222222333333 67889999999975421           112


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH------hcC-----------CCCcHHHHHHHHHhhH----HHHHhhc-------
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA------ANG-----------GQPYTDEFLAELKRGA----TELRDQQ-------  153 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~------~~~-----------~~~~~~~~~~~~~~~~----~~l~~~~-------  153 (231)
                      ...+..+|++++|+|+++..+.....      ...           ..|++ .+.++.|...    .++...+       
T Consensus        81 ~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~pii-lv~NK~Dl~~~~~~~~~~~~~~~~~~~~  159 (199)
T 4bas_A           81 ETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFL-FFANKMDAAGAKTAAELVEILDLTTLMG  159 (199)
T ss_dssp             GGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEE-EEEECTTSTTCCCHHHHHHHHTHHHHHT
T ss_pred             HHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEE-EEEECcCCCCCCCHHHHHHHhcchhhcc
Confidence            24457899999999998553322221      111           34443 3344433111    1221111       


Q ss_pred             ---cchhhhhhhhHhhHHHHHHHHHHHHH
Q 038053          154 ---AEVDSLKEYSKQEISKLMGQMQESYE  179 (231)
Q Consensus       154 ---~~i~~is~~~~~~i~~l~~~i~~~~~  179 (231)
                         -+++.+|++++.|+++++..+.....
T Consensus       160 ~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~  188 (199)
T 4bas_A          160 DHPFVIFASNGLKGTGVHEGFSWLQETAS  188 (199)
T ss_dssp             TSCEEEEECBTTTTBTHHHHHHHHHHHHH
T ss_pred             CCeeEEEEeeCCCccCHHHHHHHHHHHHH
Confidence               15678999999999999988877543

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.43  E-value=1.3e-13  Score=104.41  Aligned_cols=143  Identities=14%  Similarity=0.094  Sum_probs=85.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHH
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKR  100 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~  100 (231)
                      ..+|+++|.+|+|||||+|.|++.....  ...++.+.+........ .+  ..+.++||||.......           
T Consensus         9 ~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~-----------   74 (181)
T 3tw8_B            9 LFKLLIIGDSGVGKSSLLLRFADNTFSG--SYITTIGVDFKIRTVEI-NGEKVKLQIWDTAGQERFRTI-----------   74 (181)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHCSCC-----CCTTTBSEEEEEEEEEE-TTEEEEEEEEEETTGGGCSSC-----------
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCC--ccCCCceeEEEEEEEEE-CCEEEEEEEEcCCCchhhhhh-----------
Confidence            3799999999999999999999986532  12334444433333333 44  56788999996542211           


Q ss_pred             HhhhcCCccEEEEEEECCCCCCHHHHH--------hcCCCCcHHHHHHHHHhhH---------HHHHhhcc-chhhhhhh
Q 038053          101 IGLAKGGIHAVLVVFSVRSRFSQEEEA--------ANGGQPYTDEFLAELKRGA---------TELRDQQA-EVDSLKEY  162 (231)
Q Consensus       101 ~~~~~~~~~~il~vvd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~---------~~l~~~~~-~i~~is~~  162 (231)
                      ....+..+|++++|+|+++..+.....        .....|++ .+.++.|...         ..+....+ +++.+|+.
T Consensus        75 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  153 (181)
T 3tw8_B           75 TSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRI-LVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAK  153 (181)
T ss_dssp             CGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEE-EEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTT
T ss_pred             HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEE-EEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECC
Confidence            123457889999999998533222211        11122322 2334433110         11211122 67789999


Q ss_pred             hHhhHHHHHHHHHHHHHH
Q 038053          163 SKQEISKLMGQMQESYED  180 (231)
Q Consensus       163 ~~~~i~~l~~~i~~~~~~  180 (231)
                      +|.|+++++..+......
T Consensus       154 ~~~gi~~l~~~l~~~~~~  171 (181)
T 3tw8_B          154 ENVNVEEMFNCITELVLR  171 (181)
T ss_dssp             TTBSHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999998888775433

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.42  E-value=3.9e-13  Score=100.20  Aligned_cols=139  Identities=17%  Similarity=0.175  Sum_probs=80.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+++|++|+|||||+|.+++.....   ...+++.......... .+  ..+.++||||....    ..    +..  
T Consensus         4 ~~i~v~G~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~----~~----~~~--   69 (167)
T 1kao_A            4 YKVVVLGSGGVGKSALTVQFVTGTFIE---KYDPTIEDFYRKEIEV-DSSPSVLEILDTAGTEQF----AS----MRD--   69 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCS---CCCTTCCEEEEEEEEE-TTEEEEEEEEECCCTTCC----HH----HHH--
T ss_pred             EEEEEECCCCCCHHHHHHHHHcCCCcc---cCCCCcceeEEEEEEE-CCEEEEEEEEECCCchhh----HH----HHH--
Confidence            789999999999999999999765421   1111221111222222 33  34789999996542    11    111  


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH----------hcCCCCcHHHHHHHHHhhH---------HHHHhhcc-chhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA----------ANGGQPYTDEFLAELKRGA---------TELRDQQA-EVDSLKE  161 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~---------~~l~~~~~-~i~~is~  161 (231)
                       ..+..+|.+++|+|+++..+.....          .....|++ .+.++.|...         ..+....+ +++.+|+
T Consensus        70 -~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  147 (167)
T 1kao_A           70 -LYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVI-LVGNKVDLESEREVSSSEGRALAEEWGCPFMETSA  147 (167)
T ss_dssp             -HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEE-EEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECT
T ss_pred             -HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECCcccccccCCHHHHHHHHHHhCCCEEEecC
Confidence             1234568999999998532222111          11234443 3344444110         12222222 6778899


Q ss_pred             hhHhhHHHHHHHHHHHH
Q 038053          162 YSKQEISKLMGQMQESY  178 (231)
Q Consensus       162 ~~~~~i~~l~~~i~~~~  178 (231)
                      ++|.|+++++..+.+..
T Consensus       148 ~~~~gi~~l~~~l~~~~  164 (167)
T 1kao_A          148 KSKTMVDELFAEIVRQM  164 (167)
T ss_dssp             TCHHHHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHH
Confidence            99999999998887654

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.42  E-value=4.6e-13  Score=100.49  Aligned_cols=137  Identities=14%  Similarity=0.086  Sum_probs=84.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+++|.+|+|||||+|.+++......     ..|.......... .+..+.++||||.....           .....
T Consensus         8 ~~i~v~G~~~~GKssl~~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~~~Dt~G~~~~~-----------~~~~~   70 (171)
T 1upt_A            8 MRILILGLDGAGKTTILYRLQVGEVVTT-----IPTIGFNVETVTY-KNLKFQVWDLGGLTSIR-----------PYWRC   70 (171)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSSCCCC-----CCCSSEEEEEEEE-TTEEEEEEEECCCGGGG-----------GGGGG
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCc-----CCcCccceEEEEE-CCEEEEEEECCCChhhh-----------HHHHH
Confidence            7999999999999999999987654211     1122222333344 67788999999975411           11234


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH------hc----CCCCcHHHHHHHHHhhH----HHHHhhc--------c-chhhhh
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA------AN----GGQPYTDEFLAELKRGA----TELRDQQ--------A-EVDSLK  160 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~----~~l~~~~--------~-~i~~is  160 (231)
                      .+..+|++++|+|+++..+.....      ..    ...|++ .+.++.|...    ..+...+        + +++.+|
T Consensus        71 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  149 (171)
T 1upt_A           71 YYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILV-VFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTS  149 (171)
T ss_dssp             GCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEE-EEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECC
T ss_pred             HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEE-EEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECc
Confidence            457899999999998653332221      11    233433 3344433110    1221111        1 577899


Q ss_pred             hhhHhhHHHHHHHHHHHH
Q 038053          161 EYSKQEISKLMGQMQESY  178 (231)
Q Consensus       161 ~~~~~~i~~l~~~i~~~~  178 (231)
                      ++++.|+++++..+....
T Consensus       150 a~~~~gi~~l~~~l~~~i  167 (171)
T 1upt_A          150 ATKGTGLDEAMEWLVETL  167 (171)
T ss_dssp             TTTCTTHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHH
Confidence            999999999988877643

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.42  E-value=1.9e-13  Score=104.84  Aligned_cols=138  Identities=14%  Similarity=0.070  Sum_probs=84.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+++|.+|+|||||+|.|++....    .....|.......... .+..+.++||||...           +......
T Consensus        23 ~ki~v~G~~~~GKSsli~~l~~~~~~----~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~~~~~   86 (188)
T 1zd9_A           23 MELTLVGLQYSGKTTFVNVIASGQFN----EDMIPTVGFNMRKITK-GNVTIKLWDIGGQPR-----------FRSMWER   86 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCC----CSCCCCCSEEEEEEEE-TTEEEEEEEECCSHH-----------HHTTHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHcCCCC----CccCCCCceeEEEEEe-CCEEEEEEECCCCHh-----------HHHHHHH
Confidence            79999999999999999999976542    1111222222333333 677889999999643           1111223


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH------h----cCCCCcHHHHHHHHHhh----HHHHHhhc---------cchhhhh
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA------A----NGGQPYTDEFLAELKRG----ATELRDQQ---------AEVDSLK  160 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~------~----~~~~~~~~~~~~~~~~~----~~~l~~~~---------~~i~~is  160 (231)
                      .+..+|++++|+|+++.-+.....      .    ....|++ .+.++.|..    ..++.+.+         -+++.+|
T Consensus        87 ~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~pii-lv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  165 (188)
T 1zd9_A           87 YCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVL-VLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSIS  165 (188)
T ss_dssp             HHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEE-EEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECC
T ss_pred             HHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEE-EEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEE
Confidence            346789999999998543322211      1    1233433 344444321    11222211         1467899


Q ss_pred             hhhHhhHHHHHHHHHHHH
Q 038053          161 EYSKQEISKLMGQMQESY  178 (231)
Q Consensus       161 ~~~~~~i~~l~~~i~~~~  178 (231)
                      |++|.|+++++..+...+
T Consensus       166 A~~g~gv~~l~~~l~~~~  183 (188)
T 1zd9_A          166 CKEKDNIDITLQWLIQHS  183 (188)
T ss_dssp             TTTCTTHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHH
Confidence            999999999998887643

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.41  E-value=4.5e-13  Score=102.26  Aligned_cols=137  Identities=12%  Similarity=0.099  Sum_probs=85.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+++|.+|||||||+|.+++.....   ..  .|.......... .+..+.++||||...           +......
T Consensus        19 ~~i~v~G~~~~GKssl~~~l~~~~~~~---~~--~t~~~~~~~~~~-~~~~~~~~Dt~G~~~-----------~~~~~~~   81 (186)
T 1ksh_A           19 LRLLMLGLDNAGKTTILKKFNGEDVDT---IS--PTLGFNIKTLEH-RGFKLNIWDVGGQKS-----------LRSYWRN   81 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTTCCCSS---CC--CCSSEEEEEEEE-TTEEEEEEEECCSHH-----------HHTTGGG
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCc---cc--ccCccceEEEEE-CCEEEEEEECCCCHh-----------HHHHHHH
Confidence            899999999999999999999876211   11  122222333334 678889999999742           1222334


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH------hc----CCCCcHHHHHHHHHhhH----HHHHhhc---------cchhhhh
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA------AN----GGQPYTDEFLAELKRGA----TELRDQQ---------AEVDSLK  160 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~----~~l~~~~---------~~i~~is  160 (231)
                      .+..+|++++|+|+++..+..+..      ..    ...|++ .+.++.|...    .++.+.+         -+++.+|
T Consensus        82 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  160 (186)
T 1ksh_A           82 YFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLL-IFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCS  160 (186)
T ss_dssp             GCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEE-EEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECC
T ss_pred             HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEE-EEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEee
Confidence            567899999999998553332211      11    233333 3344443110    1222211         1577899


Q ss_pred             hhhHhhHHHHHHHHHHHH
Q 038053          161 EYSKQEISKLMGQMQESY  178 (231)
Q Consensus       161 ~~~~~~i~~l~~~i~~~~  178 (231)
                      ++++.|+++++..+.+..
T Consensus       161 a~~~~gi~~l~~~l~~~i  178 (186)
T 1ksh_A          161 AVTGEDLLPGIDWLLDDI  178 (186)
T ss_dssp             TTTCTTHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHH
Confidence            999999999998887654

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.40  E-value=1.7e-13  Score=105.35  Aligned_cols=142  Identities=13%  Similarity=0.079  Sum_probs=81.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEe-eCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      .+|+|+|.+|+|||||+|.|++......  ..+............. .....+.++||||.......           ..
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-----------~~   92 (193)
T 2oil_A           26 FKVVLIGESGVGKTNLLSRFTRNEFSHD--SRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAI-----------TS   92 (193)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCCSS--CCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTT-----------HH
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhh-----------hH
Confidence            7899999999999999999998764321  1111111111111111 12346789999998653211           11


Q ss_pred             hhcCCccEEEEEEECCCCCCHHHHH------h---cCCCCcHHHHHHHHHhhH------H---HHHhhcc-chhhhhhhh
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEEEA------A---NGGQPYTDEFLAELKRGA------T---ELRDQQA-EVDSLKEYS  163 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~~~------~---~~~~~~~~~~~~~~~~~~------~---~l~~~~~-~i~~is~~~  163 (231)
                      ..+..+|++++|+|+++..+.....      .   ....|++ .+.++.|...      .   .+....+ +++.+|+++
T Consensus        93 ~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  171 (193)
T 2oil_A           93 AYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVM-LVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALD  171 (193)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEE-EEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTT
T ss_pred             HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEE-EEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCC
Confidence            2246789999999998533221111      1   1123332 3334433110      1   1211112 577799999


Q ss_pred             HhhHHHHHHHHHHHHH
Q 038053          164 KQEISKLMGQMQESYE  179 (231)
Q Consensus       164 ~~~i~~l~~~i~~~~~  179 (231)
                      +.|+++++..+.....
T Consensus       172 ~~gi~~l~~~l~~~i~  187 (193)
T 2oil_A          172 STNVELAFETVLKEIF  187 (193)
T ss_dssp             CTTHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9999999888776543

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.40  E-value=7.4e-13  Score=101.27  Aligned_cols=142  Identities=13%  Similarity=0.021  Sum_probs=83.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeee-eeeEEeeC-----------CcEEEEEeCCCCcCCCCCch
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCE-MKTTVLKD-----------GQVVNVIDTPGLFDSSAGSE   91 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~-~~~~~~~~-----------~~~~~l~Dtpg~~~~~~~~~   91 (231)
                      .+|+|+|.+|+|||||+|.|++......  ..+....... ...... .           ...+.++||||...      
T Consensus        12 ~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~Dt~G~~~------   82 (195)
T 3bc1_A           12 IKFLALGDSGVGKTSVLYQYTDGKFNSK--FITTVGIDFREKRVVYR-ANGPDGAVGRGQRIHLQLWDTAGLER------   82 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCCS--CCCCCSEEEEEEEEEEC-TTSCCCSSCCCEEEEEEEEEECCSGG------
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCcC--cccccceeeeeEEEEEe-cCCcccccccCcEEEEEEEeCCCcHH------
Confidence            6999999999999999999998654211  1111111111 111222 2           24788999999753      


Q ss_pred             HHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH--------hc--CCCCcHHHHHHHHHhhH---------HHHHhh
Q 038053           92 FVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA--------AN--GGQPYTDEFLAELKRGA---------TELRDQ  152 (231)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~--------~~--~~~~~~~~~~~~~~~~~---------~~l~~~  152 (231)
                           +.......+..+|++++|+|+++..+..+..        ..  ...|++ .+.++.|...         ..+...
T Consensus        83 -----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~  156 (195)
T 3bc1_A           83 -----FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIV-LCGNKSDLEDQRAVKEEEARELAEK  156 (195)
T ss_dssp             -----GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEE-EEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred             -----HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECcccccccccCHHHHHHHHHH
Confidence                 1122334557899999999998533322211        11  233433 3334433110         122222


Q ss_pred             cc-chhhhhhhhHhhHHHHHHHHHHHHHH
Q 038053          153 QA-EVDSLKEYSKQEISKLMGQMQESYED  180 (231)
Q Consensus       153 ~~-~i~~is~~~~~~i~~l~~~i~~~~~~  180 (231)
                      .+ +++.+|++++.|+++++..+.....+
T Consensus       157 ~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~  185 (195)
T 3bc1_A          157 YGIPYFETSAANGTNISHAIEMLLDLIMK  185 (195)
T ss_dssp             HTCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            22 67789999999999999888775543

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.39  E-value=1.8e-13  Score=105.00  Aligned_cols=139  Identities=13%  Similarity=0.062  Sum_probs=86.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+++|.+|+|||||+|.|++...+..   ....|.......... .+..+.++||||......           ....
T Consensus        22 ~ki~v~G~~~~GKSsli~~l~~~~~~~~---~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~-----------~~~~   86 (190)
T 2h57_A           22 VHVLCLGLDNSGKTTIINKLKPSNAQSQ---NILPTIGFSIEKFKS-SSLSFTVFDMSGQGRYRN-----------LWEH   86 (190)
T ss_dssp             EEEEEEECTTSSHHHHHHHTSCGGGCCS---SCCCCSSEEEEEEEC-SSCEEEEEEECCSTTTGG-----------GGGG
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCC---CcCCccceeEEEEEE-CCEEEEEEECCCCHHHHH-----------HHHH
Confidence            7999999999999999999999873222   122333333333444 567899999999654211           1123


Q ss_pred             hcCCccEEEEEEECCCCCCHHH--HH-----hc-----CCCCcHHHHHHHHHhhH----HHHHhhc---------cchhh
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEE--EA-----AN-----GGQPYTDEFLAELKRGA----TELRDQQ---------AEVDS  158 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~--~~-----~~-----~~~~~~~~~~~~~~~~~----~~l~~~~---------~~i~~  158 (231)
                      .+..+|++++|+|+++..+..+  ..     ..     ...|++ .+.++.|...    .++.+.+         -+++.
T Consensus        87 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (190)
T 2h57_A           87 YYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPIL-FFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICA  165 (190)
T ss_dssp             GGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEE-EEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEE
T ss_pred             HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEE-EEEeCcCcccCCCHHHHHHHhChhhccCCceEEEE
Confidence            4467899999999985422222  11     11     234443 3444443211    1222211         15778


Q ss_pred             hhhhhHhhHHHHHHHHHHHH
Q 038053          159 LKEYSKQEISKLMGQMQESY  178 (231)
Q Consensus       159 is~~~~~~i~~l~~~i~~~~  178 (231)
                      +|++++.|+++++..+.+..
T Consensus       166 ~Sa~~~~gi~~l~~~l~~~i  185 (190)
T 2h57_A          166 SDAIKGEGLQEGVDWLQDQI  185 (190)
T ss_dssp             CBTTTTBTHHHHHHHHHHHC
T ss_pred             ccCCCCcCHHHHHHHHHHHH
Confidence            99999999999998887654

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.39  E-value=4.4e-13  Score=103.80  Aligned_cols=143  Identities=12%  Similarity=0.068  Sum_probs=83.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEee-CCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      .+|+|+|.+|+|||||+|.|++......  ..+.............. ....+.++||||....           .....
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-----------~~~~~   75 (203)
T 1zbd_A            9 FKILIIGNSSVGKTSFLFRYADDSFTPA--FVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERY-----------RTITT   75 (203)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTCCCCSC--CCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG-----------HHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCC--cCCccceeEEEEEEEECCeEEEEEEEECCCchhh-----------cchHH
Confidence            6899999999999999999998764221  11111222222222220 1346789999997531           11233


Q ss_pred             hhcCCccEEEEEEECCCCCCHHHHH--------hc-CCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhhhh
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEEEA--------AN-GGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKEYS  163 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~~~  163 (231)
                      ..+..+|++++|+|+++..+.....        .. ...|++ .+.++.|..         ...+....+ +++.+|+++
T Consensus        76 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  154 (203)
T 1zbd_A           76 AYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVL-LVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKD  154 (203)
T ss_dssp             TTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEE-EEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTT
T ss_pred             HhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEE-EEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCC
Confidence            4457789999999998532222111        11 223333 333443310         012222222 677899999


Q ss_pred             HhhHHHHHHHHHHHHHH
Q 038053          164 KQEISKLMGQMQESYED  180 (231)
Q Consensus       164 ~~~i~~l~~~i~~~~~~  180 (231)
                      |.|+++++..+.....+
T Consensus       155 ~~gi~~l~~~l~~~i~~  171 (203)
T 1zbd_A          155 NINVKQTFERLVDVICE  171 (203)
T ss_dssp             TBSSHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            99999999888775543

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.39  E-value=4.2e-13  Score=102.84  Aligned_cols=142  Identities=12%  Similarity=0.078  Sum_probs=82.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEee-CCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      .+|+|+|.+|+|||||+|.|++...........+.+.  ........ ....+.++||||.......           ..
T Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-----------~~   89 (189)
T 2gf9_A           23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDF--KVKTVYRHDKRIKLQIWDTAGQERYRTI-----------TT   89 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEE--EEEEEEETTEEEEEEEEECCSCCSSCCS-----------GG
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEE--EEEEEEECCeEEEEEEEeCCCcHHHhhh-----------HH
Confidence            6999999999999999999998764221111122222  11222220 2346789999997543211           22


Q ss_pred             hhcCCccEEEEEEECCCCCCHHHHH--------hc-CCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhhhh
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEEEA--------AN-GGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKEYS  163 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~~~  163 (231)
                      ..+..+|++++|+|+++..+.....        .. ...|++ .+.++.|..         ...+....+ +++.+|+++
T Consensus        90 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  168 (189)
T 2gf9_A           90 AYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVI-LVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKE  168 (189)
T ss_dssp             GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEE-EEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTT
T ss_pred             HhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEE-EEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCC
Confidence            3457889999999997532222111        11 233333 233333310         012222222 677899999


Q ss_pred             HhhHHHHHHHHHHHHH
Q 038053          164 KQEISKLMGQMQESYE  179 (231)
Q Consensus       164 ~~~i~~l~~~i~~~~~  179 (231)
                      +.|+++++..+.....
T Consensus       169 g~gi~~l~~~l~~~i~  184 (189)
T 2gf9_A          169 NINVKQVFERLVDVIC  184 (189)
T ss_dssp             TBSHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9999999988877543

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.39  E-value=1.3e-12  Score=99.41  Aligned_cols=141  Identities=13%  Similarity=0.104  Sum_probs=84.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+++|.+|||||||+|.+++......  ..+..+.......... .+  ..+.++||||...           +....
T Consensus        11 ~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~-----------~~~~~   76 (186)
T 2bme_A           11 FKFLVIGNAGTGKSCLLHQFIEKKFKDD--SNHTIGVEFGSKIINV-GGKYVKLQIWDTAGQER-----------FRSVT   76 (186)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSSCCTT--CCCCSEEEEEEEEEEE-TTEEEEEEEEEECCSGG-----------GHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCC--CCCccceEEEEEEEEE-CCEEEEEEEEeCCCcHH-----------HHHHH
Confidence            7999999999999999999998764221  2222332222222333 33  4678999999653           11223


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH--------h-cCCCCcHHHHHHHHHhhH------H---HHHhhcc-chhhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------A-NGGQPYTDEFLAELKRGA------T---ELRDQQA-EVDSLKEY  162 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~------~---~l~~~~~-~i~~is~~  162 (231)
                      ...+..+|++++|+|+++..+.....        . ....|++ .+.++.|...      .   .+....+ +++.+|++
T Consensus        77 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  155 (186)
T 2bme_A           77 RSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVII-LCGNKKDLDADREVTFLEASRFAQENELMFLETSAL  155 (186)
T ss_dssp             HTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEE-EEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred             HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEE-EEEECcccccccccCHHHHHHHHHHcCCEEEEecCC
Confidence            44567899999999998532221111        1 2233333 3334443210      1   1111112 56778999


Q ss_pred             hHhhHHHHHHHHHHHHH
Q 038053          163 SKQEISKLMGQMQESYE  179 (231)
Q Consensus       163 ~~~~i~~l~~~i~~~~~  179 (231)
                      ++.|+++++..+.....
T Consensus       156 ~~~gi~~l~~~l~~~~~  172 (186)
T 2bme_A          156 TGENVEEAFVQCARKIL  172 (186)
T ss_dssp             TCTTHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            99999999888776543

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.39  E-value=2.5e-13  Score=101.66  Aligned_cols=139  Identities=14%  Similarity=0.111  Sum_probs=78.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEee-CCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      .+|+++|.+|+|||||+|.|++...........+.+.  ........ ....+.++||||.....           ....
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~D~~G~~~~~-----------~~~~   73 (170)
T 1r2q_A            7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAF--LTQTVCLDDTTVKFEIWDTAGQERYH-----------SLAP   73 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEE--EEEEEEETTEEEEEEEEEECCSGGGG-----------GGHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEE--EEEEEEECCEEEEEEEEeCCCcHHhh-----------hhhH
Confidence            6899999999999999999997653211111112221  11112221 24567899999965411           1112


Q ss_pred             hhcCCccEEEEEEECCCCCCHHHHH--------h-cCCCCcHHHHHHHHHhhH------H---HHHhhcc-chhhhhhhh
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEEEA--------A-NGGQPYTDEFLAELKRGA------T---ELRDQQA-EVDSLKEYS  163 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~------~---~l~~~~~-~i~~is~~~  163 (231)
                      ..+..+|++++|+|+++..+.....        . ....|++ .+.++.|...      .   .+....+ +++.+|+++
T Consensus        74 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  152 (170)
T 1r2q_A           74 MYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIA-LSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKT  152 (170)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEE-EEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTT
T ss_pred             HhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEE-EEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCC
Confidence            2346789999999998543222211        1 1122222 2224433110      1   1211122 567789999


Q ss_pred             HhhHHHHHHHHHH
Q 038053          164 KQEISKLMGQMQE  176 (231)
Q Consensus       164 ~~~i~~l~~~i~~  176 (231)
                      |.|+++++..+.+
T Consensus       153 g~gi~~l~~~i~~  165 (170)
T 1r2q_A          153 SMNVNEIFMAIAK  165 (170)
T ss_dssp             CTTHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHH
Confidence            9999999888765

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.39  E-value=1.9e-12  Score=98.71  Aligned_cols=142  Identities=18%  Similarity=0.193  Sum_probs=81.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCc--EEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+++|.+|||||||+|.|++....   ....+++.......... .+.  .+.++||||.......        ..  
T Consensus         5 ~ki~v~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~--------~~--   70 (189)
T 4dsu_A            5 YKLVVVGADGVGKSALTIQLIQNHFV---DEYDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYSAM--------RD--   70 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSSCC---CCCCTTCCEEEEEEEEE-TTEEEEEEEEECCCC---CTT--------HH--
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCCCC---CCCCCCchheEEEEEEE-CCcEEEEEEEECCCcHHHHHH--------HH--
Confidence            78999999999999999999987642   12222232222222222 343  3667999996543211        11  


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH----------hcCCCCcHHHHHHHHHhh--------HHHHHhhcc-chhhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA----------ANGGQPYTDEFLAELKRG--------ATELRDQQA-EVDSLKEY  162 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~--------~~~l~~~~~-~i~~is~~  162 (231)
                       ..+..+|++++|+|+++.-+.....          .....|++ .+.++.|..        ...+....+ +++.+|+.
T Consensus        71 -~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~  148 (189)
T 4dsu_A           71 -QYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMV-LVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAK  148 (189)
T ss_dssp             -HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEE-EEEECTTSSSCSSCHHHHHHHHHHHTCCEEECCTT
T ss_pred             -HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE-EEEECccCcccccCHHHHHHHHHHcCCeEEEEeCC
Confidence             1123469999999998532222211          11233433 333443311        012222222 67789999


Q ss_pred             hHhhHHHHHHHHHHHHHHH
Q 038053          163 SKQEISKLMGQMQESYEDQ  181 (231)
Q Consensus       163 ~~~~i~~l~~~i~~~~~~~  181 (231)
                      +|.|+++++..+...+...
T Consensus       149 ~g~gi~~l~~~l~~~~~~~  167 (189)
T 4dsu_A          149 TRQGVDDAFYTLVREIRKH  167 (189)
T ss_dssp             TCTTHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHh
Confidence            9999999998887765443

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.38  E-value=6.3e-13  Score=99.11  Aligned_cols=136  Identities=11%  Similarity=0.057  Sum_probs=82.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhh
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLA  104 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~  104 (231)
                      +|+++|.+|+|||||+|.+++......   .+  |.......... .+..+.++||||....           .......
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~~~~~~---~~--t~~~~~~~~~~-~~~~~~i~Dt~G~~~~-----------~~~~~~~   64 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLGEIVTT---IP--TIGFNVETVEY-KNISFTVWDVGGQDKI-----------RPLWRHY   64 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHCSSCC---CC--CSSCCEEEEEC-SSCEEEEEECCCCGGG-----------HHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCcCcc---cC--cCceeEEEEEE-CCEEEEEEEcCCChhh-----------HHHHHHH
Confidence            799999999999999999987653211   11  22222222333 5678899999997541           1122234


Q ss_pred             cCCccEEEEEEECCCCCCHHHHH------hc----CCCCcHHHHHHHHHhhH----HHHHhhcc---------chhhhhh
Q 038053          105 KGGIHAVLVVFSVRSRFSQEEEA------AN----GGQPYTDEFLAELKRGA----TELRDQQA---------EVDSLKE  161 (231)
Q Consensus       105 ~~~~~~il~vvd~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~----~~l~~~~~---------~i~~is~  161 (231)
                      +..+|++++|+|+++.-+.....      ..    ...|++ .+.++.|...    ..+.....         +++.+|+
T Consensus        65 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  143 (164)
T 1r8s_A           65 FQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLL-VFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCA  143 (164)
T ss_dssp             TTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEE-EEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBT
T ss_pred             hccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEE-EEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEccc
Confidence            57889999999998542222211      11    123333 3334433110    12222111         4677999


Q ss_pred             hhHhhHHHHHHHHHHHH
Q 038053          162 YSKQEISKLMGQMQESY  178 (231)
Q Consensus       162 ~~~~~i~~l~~~i~~~~  178 (231)
                      +++.|+++++..+....
T Consensus       144 ~~~~gi~~l~~~l~~~i  160 (164)
T 1r8s_A          144 TSGDGLYEGLDWLSNQL  160 (164)
T ss_dssp             TTTBTHHHHHHHHHHHC
T ss_pred             CCCcCHHHHHHHHHHHH
Confidence            99999999998887643

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.38  E-value=3.8e-13  Score=103.61  Aligned_cols=142  Identities=13%  Similarity=0.139  Sum_probs=82.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC-------------------------------
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG-------------------------------   72 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~-------------------------------   72 (231)
                      .+|+++|.+|+|||||+|.|++......  ..+.+........... .+                               
T Consensus         8 ~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (208)
T 3clv_A            8 YKTVLLGESSVGKSSIVLRLTKDTFHEN--TNTTIGASFCTYVVNL-NDINIKNNSNNEKNNNINSINDDNNVIITNQHN   84 (208)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSS--CCCCCSCEEEEEEEET-TC-------------------------------
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcCCCC--cCccccceeEEEEEEe-cCccccccccccccccccccccccccccccccc
Confidence            7999999999999999999998864211  1111111111111111 11                               


Q ss_pred             --------cEEEEEeCCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH-------hcCCCCcHHH
Q 038053           73 --------QVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA-------ANGGQPYTDE  137 (231)
Q Consensus        73 --------~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~-------~~~~~~~~~~  137 (231)
                              ..+.++||||......           .....+..+|++++|+|+++..+..+..       .....|++ .
T Consensus        85 ~~~~~~~~~~~~i~Dt~G~~~~~~-----------~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~pii-l  152 (208)
T 3clv_A           85 NYNENLCNIKFDIWDTAGQERYAS-----------IVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIII-L  152 (208)
T ss_dssp             CCCTTTCEEEEEEEECTTGGGCTT-----------THHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEE-E
T ss_pred             cccCccceeEEEEEECCCcHHHHH-----------HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEE-E
Confidence                    5788999999654221           1122346789999999998543322211       11123332 3


Q ss_pred             HHHHHHhhH-----HHHHhh---cc-chhhhhhhhHhhHHHHHHHHHHHHHH
Q 038053          138 FLAELKRGA-----TELRDQ---QA-EVDSLKEYSKQEISKLMGQMQESYED  180 (231)
Q Consensus       138 ~~~~~~~~~-----~~l~~~---~~-~i~~is~~~~~~i~~l~~~i~~~~~~  180 (231)
                      ++++.|...     .++...   .+ +++.+|++++.|+++++..+.....+
T Consensus       153 v~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  204 (208)
T 3clv_A          153 VANKIDKNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYK  204 (208)
T ss_dssp             EEECTTCC-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             EEECCCcccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            334433110     122222   12 67789999999999999888765433

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.38  E-value=8.8e-12  Score=105.42  Aligned_cols=148  Identities=14%  Similarity=0.136  Sum_probs=85.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      ..|+|+|+||||||||+|.|+|.....  ...++.|.+........ .+..+.++||||+.....  ..+.+.+...+ .
T Consensus       180 ~~V~lvG~~naGKSTLln~L~~~~~~~--~~~~~~T~d~~~~~i~~-~g~~v~l~DT~G~i~~lp--~~lve~f~~tl-~  253 (364)
T 2qtf_A          180 PSIGIVGYTNSGKTSLFNSLTGLTQKV--DTKLFTTMSPKRYAIPI-NNRKIMLVDTVGFIRGIP--PQIVDAFFVTL-S  253 (364)
T ss_dssp             CEEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEEE-TTEEEEEEECCCBCSSCC--GGGHHHHHHHH-H
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCCccc--cCCcccccCCEEEEEEE-CCEEEEEEeCCCchhcCC--HHHHHHHHHHH-H
Confidence            359999999999999999999987532  23455666555555555 677889999999865321  22333333333 3


Q ss_pred             hcCCccEEEEEEECCCCC--CHHHHH--------h-cCCCCcHHHHHHHHHhhH-------H---HHHhhc----cchhh
Q 038053          104 AKGGIHAVLVVFSVRSRF--SQEEEA--------A-NGGQPYTDEFLAELKRGA-------T---ELRDQQ----AEVDS  158 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~--~~~~~~--------~-~~~~~~~~~~~~~~~~~~-------~---~l~~~~----~~i~~  158 (231)
                      .+..+|.+++|+|+++..  ......        . ....|.+ .++++.+...       .   .+...+    .++++
T Consensus       254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~i-lV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~  332 (364)
T 2qtf_A          254 EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPIL-VTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIP  332 (364)
T ss_dssp             GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEE-EEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEE
T ss_pred             HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEE-EEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEE
Confidence            457889999999998543  111110        1 1233422 2233333100       0   111222    15678


Q ss_pred             hhhhhHhhHHHHHHHHHHHH
Q 038053          159 LKEYSKQEISKLMGQMQESY  178 (231)
Q Consensus       159 is~~~~~~i~~l~~~i~~~~  178 (231)
                      +|++++.|++.++..+.+.+
T Consensus       333 ~SA~~g~gi~~L~~~I~~~l  352 (364)
T 2qtf_A          333 ISALKRTNLELLRDKIYQLA  352 (364)
T ss_dssp             CBTTTTBSHHHHHHHHHHHH
T ss_pred             EECCCCcCHHHHHHHHHHHh
Confidence            99999999999999887754

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.38  E-value=1.1e-12  Score=99.81  Aligned_cols=140  Identities=20%  Similarity=0.203  Sum_probs=81.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+++|.+|+|||||+|.|++....   ....+++.......... .+  ..+.++||||....    ..    +.   
T Consensus        19 ~ki~v~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~----~~----~~---   83 (187)
T 2a9k_A           19 HKVIMVGSGGVGKSALTLQFMYDEFV---EDYEPTKADSYRKKVVL-DGEEVQIDILDTAGQEDY----AA----IR---   83 (187)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCC---CSCCTTCCEEEEEEEEE-TTEEEEEEEEECCCTTCC----HH----HH---
T ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCC---CcCCCccceEEEEEEEE-CCEEEEEEEEECCCCccc----HH----HH---
Confidence            79999999999999999999987632   11222222222222222 33  36789999996542    11    11   


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH---------h-cCCCCcHHHHHHHHHhhH------HHHHh---hcc-chhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA---------A-NGGQPYTDEFLAELKRGA------TELRD---QQA-EVDSLKE  161 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~---------~-~~~~~~~~~~~~~~~~~~------~~l~~---~~~-~i~~is~  161 (231)
                      ...+..+|++++|+|+++..+.....         . ....|++ .+.++.|...      .++..   ..+ +++.+|+
T Consensus        84 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  162 (187)
T 2a9k_A           84 DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL-LVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSA  162 (187)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEE-EEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCT
T ss_pred             HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECccccccCccCHHHHHHHHHHcCCeEEEeCC
Confidence            11224579999999998432211111         1 1234443 3344443110      12221   122 6778999


Q ss_pred             hhHhhHHHHHHHHHHHHH
Q 038053          162 YSKQEISKLMGQMQESYE  179 (231)
Q Consensus       162 ~~~~~i~~l~~~i~~~~~  179 (231)
                      +++.|+++++..+.....
T Consensus       163 ~~~~gi~~l~~~l~~~i~  180 (187)
T 2a9k_A          163 KTRANVDKVFFDLMREIR  180 (187)
T ss_dssp             TTCTTHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHH
Confidence            999999999888877543

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.37  E-value=7.3e-13  Score=101.75  Aligned_cols=142  Identities=18%  Similarity=0.151  Sum_probs=85.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+++|.+|+|||||+|.|++......  ..+..+.+........ .+  ..+.++||||......           ..
T Consensus        17 ~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~-----------~~   82 (196)
T 3tkl_A           17 FKLLLIGDSGVGKSCLLLRFADDTYTES--YISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRT-----------IT   82 (196)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCSC--CCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGCT-----------TH
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCCCCCC--CCCcccceEEEEEEEE-CCEEEEEEEEECCCcHhhhh-----------hH
Confidence            7899999999999999999998764221  2333444333333333 44  4678999999654221           01


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKEY  162 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~~  162 (231)
                      ...+..+|++++|+|+++..+.....         .....|++ .+.++.|..         ...+....+ +++.+|++
T Consensus        83 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (196)
T 3tkl_A           83 SSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKL-LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAK  161 (196)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEE-EEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTT
T ss_pred             HHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEE-EEEECcccccccccCHHHHHHHHHHcCCcEEEEeCC
Confidence            12336789999999998532211111         11123333 233443311         012222222 67889999


Q ss_pred             hHhhHHHHHHHHHHHHHH
Q 038053          163 SKQEISKLMGQMQESYED  180 (231)
Q Consensus       163 ~~~~i~~l~~~i~~~~~~  180 (231)
                      ++.|+++++..+...+.+
T Consensus       162 ~g~gv~~l~~~l~~~i~~  179 (196)
T 3tkl_A          162 NATNVEQSFMTMAAEIKK  179 (196)
T ss_dssp             TCTTHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999998888775443

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.37  E-value=2.4e-13  Score=101.83  Aligned_cols=140  Identities=17%  Similarity=0.091  Sum_probs=79.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEee-CCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      .+|+++|.+|+|||||+|.+++...........+.+..  ....... ....+.++||||.....           ....
T Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~Dt~G~~~~~-----------~~~~   73 (170)
T 1z0j_A            7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFM--TKTVQYQNELHKFLIWDTAGLERFR-----------ALAP   73 (170)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEE--EEEEEETTEEEEEEEEEECCSGGGG-----------GGTH
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEE--EEEEEECCeEEEEEEEcCCCchhhh-----------cccH
Confidence            68999999999999999999987642111112222221  1112220 23567899999975311           1111


Q ss_pred             hhcCCccEEEEEEECCCCCCHHHHH--------h-cCCCCcHHHHHHHHHhh---------HHHHHhhc-cchhhhhhhh
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEEEA--------A-NGGQPYTDEFLAELKRG---------ATELRDQQ-AEVDSLKEYS  163 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~---------~~~l~~~~-~~i~~is~~~  163 (231)
                      ..+..+|++++|+|+++..+.....        . ....|++ .+.++.|..         ...+.... .+++.+|+++
T Consensus        74 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~ii-lv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~  152 (170)
T 1z0j_A           74 MYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVA-IAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKN  152 (170)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEE-EEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTT
T ss_pred             hhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEE-EEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCC
Confidence            2346779999999998543322211        1 1122222 222333210         01222222 2677899999


Q ss_pred             HhhHHHHHHHHHHH
Q 038053          164 KQEISKLMGQMQES  177 (231)
Q Consensus       164 ~~~i~~l~~~i~~~  177 (231)
                      +.|+++++..+.+.
T Consensus       153 ~~~i~~l~~~i~~~  166 (170)
T 1z0j_A          153 AININELFIEISRR  166 (170)
T ss_dssp             TBSHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHH
Confidence            99999998887653

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.37  E-value=3.9e-13  Score=103.38  Aligned_cols=141  Identities=14%  Similarity=0.070  Sum_probs=81.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+++|.+|+|||||+|.|++...........+.+.......... ....+.++||||......        +   ...
T Consensus        24 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~--------~---~~~   91 (192)
T 2fg5_A           24 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGN-ELHKFLIWDTAGQERFHS--------L---APM   91 (192)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSS-SEEEEEEEEECCSGGGGG--------G---THH
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCC-EEEEEEEEcCCCchhhHh--------h---hHH
Confidence            7899999999999999999998763211112222222211111111 345688999999654211        0   112


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH--------h-cCCCCcHHHHHHHHHhh------HHHHHh---hcc-chhhhhhhhH
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA--------A-NGGQPYTDEFLAELKRG------ATELRD---QQA-EVDSLKEYSK  164 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~------~~~l~~---~~~-~i~~is~~~~  164 (231)
                      .+..+|++++|+|+++..+.....        . ....|++ .+.++.|..      ..++..   ..+ +++.+|++++
T Consensus        92 ~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-iv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~  170 (192)
T 2fg5_A           92 YYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMA-IAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNA  170 (192)
T ss_dssp             HHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEE-EEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTT
T ss_pred             hhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEE-EEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCC
Confidence            336789999999998543322211        1 1133333 333443311      012222   222 6778999999


Q ss_pred             hhHHHHHHHHHHH
Q 038053          165 QEISKLMGQMQES  177 (231)
Q Consensus       165 ~~i~~l~~~i~~~  177 (231)
                      .|+++++..+.+.
T Consensus       171 ~gi~~l~~~l~~~  183 (192)
T 2fg5_A          171 INIEELFQGISRQ  183 (192)
T ss_dssp             BSHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHH
Confidence            9999999888764

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.37  E-value=3.6e-13  Score=102.35  Aligned_cols=137  Identities=13%  Similarity=0.116  Sum_probs=82.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+++|++|||||||+|.+++.......+.. +.+    ...... .+..+.++||||.......           ...
T Consensus        19 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~-~~~----~~~~~~-~~~~~~i~Dt~G~~~~~~~-----------~~~   81 (183)
T 1moz_A           19 LRILILGLDGAGKTTILYRLQIGEVVTTKPTI-GFN----VETLSY-KNLKLNVWDLGGQTSIRPY-----------WRC   81 (183)
T ss_dssp             EEEEEEEETTSSHHHHHHHTCCSEEEEECSST-TCC----EEEEEE-TTEEEEEEEEC----CCTT-----------GGG
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCcCccCCcC-ccc----eEEEEE-CCEEEEEEECCCCHhHHHH-----------HHH
Confidence            89999999999999999999976543222221 211    222333 5678889999998653211           123


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH------h----cCCCCcHHHHHHHHHhh----HHHHHhhcc---------chhhhh
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA------A----NGGQPYTDEFLAELKRG----ATELRDQQA---------EVDSLK  160 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~------~----~~~~~~~~~~~~~~~~~----~~~l~~~~~---------~i~~is  160 (231)
                      .+..+|++++|+|+++..+.....      .    ....|++ .+.++.|..    ..++.+.+.         +++.+|
T Consensus        82 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S  160 (183)
T 1moz_A           82 YYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALL-VFANKQDQPGALSASEVSKELNLVELKDRSWSIVASS  160 (183)
T ss_dssp             TTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEE-EEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEB
T ss_pred             HhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEE-EEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEcc
Confidence            457889999999998654433222      1    1233333 344444411    122322221         567899


Q ss_pred             hhhHhhHHHHHHHHHHHH
Q 038053          161 EYSKQEISKLMGQMQESY  178 (231)
Q Consensus       161 ~~~~~~i~~l~~~i~~~~  178 (231)
                      ++++.|+++++..+.+..
T Consensus       161 a~~~~gi~~l~~~l~~~~  178 (183)
T 1moz_A          161 AIKGEGITEGLDWLIDVI  178 (183)
T ss_dssp             GGGTBTHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHH
Confidence            999999999998887754

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.37  E-value=2.4e-13  Score=102.68  Aligned_cols=139  Identities=12%  Similarity=0.110  Sum_probs=79.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeC--CcEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+++|.+|+|||||+|.|++...........+.+.  ....... .  ...+.++||||.....    .   .    .
T Consensus        16 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~-~~~~~~~~l~Dt~G~~~~~----~---~----~   81 (179)
T 1z0f_A           16 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEF--GTRIIEV-SGQKIKLQIWDTAGQERFR----A---V----T   81 (179)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCE--EEEEEEE-TTEEEEEEEEECTTGGGTC----H---H----H
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEE--EEEEEEE-CCeEEEEEEEECCCChHhh----h---h----H
Confidence            7999999999999999999998764211111111121  1112222 2  2467899999965421    1   1    1


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH--------h-cCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------A-NGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKEY  162 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~~  162 (231)
                      ...+..+|++++|+|+++..+..+..        . ....|++ .+.++.|..         ...+....+ +++.+|++
T Consensus        82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  160 (179)
T 1z0f_A           82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVII-LIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAK  160 (179)
T ss_dssp             HHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEE-EEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred             HHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEE-EEEECcccccccccCHHHHHHHHHHcCCEEEEEeCC
Confidence            22235679999999998542222211        1 1223332 233333311         012211122 67788999


Q ss_pred             hHhhHHHHHHHHHHH
Q 038053          163 SKQEISKLMGQMQES  177 (231)
Q Consensus       163 ~~~~i~~l~~~i~~~  177 (231)
                      ++.|+++++..+.+.
T Consensus       161 ~~~gi~~l~~~l~~~  175 (179)
T 1z0f_A          161 TGENVEDAFLEAAKK  175 (179)
T ss_dssp             TCTTHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHH
Confidence            999999998887664

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.37  E-value=9.2e-13  Score=110.39  Aligned_cols=41  Identities=22%  Similarity=0.168  Sum_probs=36.4

Q ss_pred             CCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 038053            4 GMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus         4 ~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      .|+...+++++++.+.+|  .+++|+|+||||||||+|.|+|.
T Consensus        38 ~~~~~~~l~~i~~~~~~g--~~v~i~G~~GaGKSTLl~~l~g~   78 (337)
T 2qm8_A           38 RAAVRDLIDAVLPQTGRA--IRVGITGVPGVGKSTTIDALGSL   78 (337)
T ss_dssp             HHHHHHHHHHHGGGCCCS--EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             ccChHHHHHhCCcccCCC--eEEEEECCCCCCHHHHHHHHHHh
Confidence            345567889999999999  99999999999999999999854

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.37  E-value=1e-12  Score=98.02  Aligned_cols=139  Identities=20%  Similarity=0.206  Sum_probs=78.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+++|.+|+|||||+|.+++.....   ...+++.......... .+  ..+.++||||....    ..    +   .
T Consensus         5 ~~i~v~G~~~~GKssl~~~l~~~~~~~---~~~~t~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~----~~----~---~   69 (168)
T 1u8z_A            5 HKVIMVGSGGVGKSALTLQFMYDEFVE---DYEPTKADSYRKKVVL-DGEEVQIDILDTAGQEDY----AA----I---R   69 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCS---CCCTTCCEEEEEEEEE-TTEEEEEEEEECCC---C----HH----H---H
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCccCC---CCCCCcceEEEEEEEE-CCEEEEEEEEECCCcchh----HH----H---H
Confidence            789999999999999999999876321   1222222222222222 33  36789999996531    11    1   1


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH---------h-cCCCCcHHHHHHHHHhhH------HHHHh---hcc-chhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA---------A-NGGQPYTDEFLAELKRGA------TELRD---QQA-EVDSLKE  161 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~---------~-~~~~~~~~~~~~~~~~~~------~~l~~---~~~-~i~~is~  161 (231)
                      ...+..+|++++|+|+++..+.....         . ....|++ .+.++.|...      .++..   ..+ +++.+|+
T Consensus        70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  148 (168)
T 1u8z_A           70 DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL-LVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSA  148 (168)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEE-EEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCT
T ss_pred             HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE-EEEECccccccCccCHHHHHHHHHHcCCeEEEeCC
Confidence            12234579999999998432222111         1 1234443 3344443110      11111   112 6778999


Q ss_pred             hhHhhHHHHHHHHHHHH
Q 038053          162 YSKQEISKLMGQMQESY  178 (231)
Q Consensus       162 ~~~~~i~~l~~~i~~~~  178 (231)
                      ++|.|+++++..+....
T Consensus       149 ~~~~gi~~l~~~l~~~i  165 (168)
T 1u8z_A          149 KTRANVDKVFFDLMREI  165 (168)
T ss_dssp             TTCTTHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            99999999988876643

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.37  E-value=8.6e-13  Score=100.63  Aligned_cols=138  Identities=15%  Similarity=0.133  Sum_probs=83.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      ..+|+++|++|||||||+|.+++.......+.. +.+    ...... .+..+.++||||....           .....
T Consensus        16 ~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~-g~~----~~~~~~-~~~~l~i~Dt~G~~~~-----------~~~~~   78 (181)
T 1fzq_A           16 EVRILLLGLDNAGKTTLLKQLASEDISHITPTQ-GFN----IKSVQS-QGFKLNVWDIGGQRKI-----------RPYWR   78 (181)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCCSCCEEEEEET-TEE----EEEEEE-TTEEEEEEECSSCGGG-----------HHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCcccCcC-CeE----EEEEEE-CCEEEEEEECCCCHHH-----------HHHHH
Confidence            379999999999999999999988542222221 211    222333 5778889999996531           11122


Q ss_pred             hhcCCccEEEEEEECCCCCCHHHHH------h----cCCCCcHHHHHHHHHhhH----HHHHhhc---------cchhhh
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEEEA------A----NGGQPYTDEFLAELKRGA----TELRDQQ---------AEVDSL  159 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~~~------~----~~~~~~~~~~~~~~~~~~----~~l~~~~---------~~i~~i  159 (231)
                      ..+..+|++++|+|+++.-+.....      .    ....|++ .+.++.|...    .++.+.+         -+++.+
T Consensus        79 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-lv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (181)
T 1fzq_A           79 SYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVL-IFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSC  157 (181)
T ss_dssp             HHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEE-EEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEEC
T ss_pred             HHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEE-EEEECcCcccCCCHHHHHHHhCchhccCCceEEEEc
Confidence            3346789999999998543322211      1    1233433 3334433210    1222211         146778


Q ss_pred             hhhhHhhHHHHHHHHHHHH
Q 038053          160 KEYSKQEISKLMGQMQESY  178 (231)
Q Consensus       160 s~~~~~~i~~l~~~i~~~~  178 (231)
                      ||++|.|+++++..+.+..
T Consensus       158 Sa~~g~gi~~l~~~l~~~~  176 (181)
T 1fzq_A          158 SALTGEGVQDGMNWVCKNV  176 (181)
T ss_dssp             CTTTCTTHHHHHHHHHHTC
T ss_pred             cCCCCCCHHHHHHHHHHHH
Confidence            9999999999998886643

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.36  E-value=9.7e-13  Score=99.51  Aligned_cols=141  Identities=17%  Similarity=0.185  Sum_probs=81.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHH
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKR  100 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~  100 (231)
                      ..+|+++|.+|+|||||+|.|++....   ....+++.......... .+  ..+.++||||.......    .   .. 
T Consensus         9 ~~~i~v~G~~~~GKssli~~l~~~~~~---~~~~~t~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~----~---~~-   76 (181)
T 2fn4_A            9 THKLVVVGGGGVGKSALTIQFIQSYFV---SDYDPTIEDSYTKICSV-DGIPARLDILDTAGQEEFGAM----R---EQ-   76 (181)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSSCC---SSCCTTCCEEEEEEEEE-TTEEEEEEEEECCCTTTTSCC----H---HH-
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCcCc---cccCCCcCceEEEEEEE-CCEEEEEEEEECCCchhhHHH----H---HH-
Confidence            479999999999999999999987531   12222222221222222 33  36778999997643211    1   11 


Q ss_pred             HhhhcCCccEEEEEEECCCCCCHHHHH----------hcCCCCcHHHHHHHHHhhH---------HHHHhhcc-chhhhh
Q 038053          101 IGLAKGGIHAVLVVFSVRSRFSQEEEA----------ANGGQPYTDEFLAELKRGA---------TELRDQQA-EVDSLK  160 (231)
Q Consensus       101 ~~~~~~~~~~il~vvd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~---------~~l~~~~~-~i~~is  160 (231)
                         .+..+|++++|+|+++..+.....          .....|++ .+.++.|...         ..+..... +++.+|
T Consensus        77 ---~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S  152 (181)
T 2fn4_A           77 ---YMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVV-LVGNKADLESQRQVPRSEASAFGASHHVAYFEAS  152 (181)
T ss_dssp             ---HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEE-EEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECB
T ss_pred             ---HHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECcccccccccCHHHHHHHHHHcCCeEEEec
Confidence               123469999999998532211111          12233443 3344443110         12211112 577899


Q ss_pred             hhhHhhHHHHHHHHHHHHH
Q 038053          161 EYSKQEISKLMGQMQESYE  179 (231)
Q Consensus       161 ~~~~~~i~~l~~~i~~~~~  179 (231)
                      +++|.|+++++..+.....
T Consensus       153 a~~~~gv~~l~~~l~~~~~  171 (181)
T 2fn4_A          153 AKLRLNVDEAFEQLVRAVR  171 (181)
T ss_dssp             TTTTBSHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHH
Confidence            9999999999988877543

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.35  E-value=8.3e-14  Score=109.40  Aligned_cols=83  Identities=13%  Similarity=0.062  Sum_probs=61.0

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCC
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTP   81 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtp   81 (231)
                      ++.|++ .++++++|++++|  .+++|+|+||||||||+++|+|...+.    .|.+........ .. .....++++.|
T Consensus        17 s~~y~~-~il~~vsl~i~~G--e~~~iiG~NGsGKSTLlk~l~Gl~~p~----~G~I~~~g~~~~-~~-~~~i~~v~q~~   87 (214)
T 1sgw_A           17 SVGYDK-PVLERITMTIEKG--NVVNFHGPNGIGKTTLLKTISTYLKPL----KGEIIYNGVPIT-KV-KGKIFFLPEEI   87 (214)
T ss_dssp             EEESSS-EEEEEEEEEEETT--CCEEEECCTTSSHHHHHHHHTTSSCCS----EEEEEETTEEGG-GG-GGGEEEECSSC
T ss_pred             EEEeCC-eEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCC----CeEEEECCEEhh-hh-cCcEEEEeCCC
Confidence            567888 8999999999999  999999999999999999999998743    332322111100 11 34578899999


Q ss_pred             CCcCCCCCchHH
Q 038053           82 GLFDSSAGSEFV   93 (231)
Q Consensus        82 g~~~~~~~~~~~   93 (231)
                      .+++..++.+++
T Consensus        88 ~~~~~~tv~enl   99 (214)
T 1sgw_A           88 IVPRKISVEDYL   99 (214)
T ss_dssp             CCCTTSBHHHHH
T ss_pred             cCCCCCCHHHHH
Confidence            887765554444

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.35  E-value=1.7e-12  Score=100.44  Aligned_cols=141  Identities=20%  Similarity=0.192  Sum_probs=81.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHH
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKR  100 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~  100 (231)
                      ..+|+|+|.+|||||||+|.|++....   ....+++.......... .+  ..+.++||||.....    .    +.  
T Consensus        14 ~~ki~v~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~----~----~~--   79 (206)
T 2bov_A           14 LHKVIMVGSGGVGKSALTLQFMYDEFV---EDYEPTKADSYRKKVVL-DGEEVQIDILDTAGQEDYA----A----IR--   79 (206)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCC---TTCCTTCCEEEEEEEEE-TTEEEEEEEEECCCTTCCH----H----HH--
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCCCC---CCCCCccceEEEEEEEE-CCEEEEEEEEcCCChhhhH----H----HH--
Confidence            379999999999999999999987632   12222222222222222 33  367899999965421    1    11  


Q ss_pred             HhhhcCCccEEEEEEECCCCCCHHHHH--------h--cCCCCcHHHHHHHHHhhH------HH---HHhhcc-chhhhh
Q 038053          101 IGLAKGGIHAVLVVFSVRSRFSQEEEA--------A--NGGQPYTDEFLAELKRGA------TE---LRDQQA-EVDSLK  160 (231)
Q Consensus       101 ~~~~~~~~~~il~vvd~~~~~~~~~~~--------~--~~~~~~~~~~~~~~~~~~------~~---l~~~~~-~i~~is  160 (231)
                       ...+..+|++++|+|+++..+.....        .  ....|++ .+.++.|...      ..   +....+ +++.+|
T Consensus        80 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  157 (206)
T 2bov_A           80 -DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL-LVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETS  157 (206)
T ss_dssp             -HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEE-EEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEC
T ss_pred             -HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEeccCccccccccHHHHHHHHHHhCCeEEEEe
Confidence             11224579999999998432211111        1  1234443 3334433110      11   211122 677899


Q ss_pred             hhhHhhHHHHHHHHHHHHH
Q 038053          161 EYSKQEISKLMGQMQESYE  179 (231)
Q Consensus       161 ~~~~~~i~~l~~~i~~~~~  179 (231)
                      +++|.|+++++..+.....
T Consensus       158 a~~g~gi~~l~~~l~~~i~  176 (206)
T 2bov_A          158 AKTRANVDKVFFDLMREIR  176 (206)
T ss_dssp             TTTCTTHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHH
Confidence            9999999999888877543

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.35  E-value=2.8e-12  Score=106.15  Aligned_cols=107  Identities=11%  Similarity=0.136  Sum_probs=57.4

Q ss_pred             CcEEEEEeCCCCcCCCC--CchHHHHHHHHHHhhhcCCccEEEEEEEC-CCCCCHHHH-H----h-cCCCCcHHHHHHHH
Q 038053           72 GQVVNVIDTPGLFDSSA--GSEFVGKEIVKRIGLAKGGIHAVLVVFSV-RSRFSQEEE-A----A-NGGQPYTDEFLAEL  142 (231)
Q Consensus        72 ~~~~~l~Dtpg~~~~~~--~~~~~~~~~~~~~~~~~~~~~~il~vvd~-~~~~~~~~~-~----~-~~~~~~~~~~~~~~  142 (231)
                      ...+.++||||+.....  ....+...+.......+..+|++++|+|+ +..+...+. .    . ....+.+ .++|++
T Consensus       130 ~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i-~v~NK~  208 (315)
T 1jwy_B          130 VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTI-GVITKL  208 (315)
T ss_dssp             SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEE-EEEECT
T ss_pred             CCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEE-EEEcCc
Confidence            35789999999975211  11123334455555566788999999997 434432221 1    1 2233333 344444


Q ss_pred             Hhh------HHHHHhh-----c--cchhhhhhhh---HhhHHHHHHHHHHHHH
Q 038053          143 KRG------ATELRDQ-----Q--AEVDSLKEYS---KQEISKLMGQMQESYE  179 (231)
Q Consensus       143 ~~~------~~~l~~~-----~--~~i~~is~~~---~~~i~~l~~~i~~~~~  179 (231)
                      |..      ...+...     .  .++..+|+.+   +.|+.+++..+...+.
T Consensus       209 Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~  261 (315)
T 1jwy_B          209 DLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFK  261 (315)
T ss_dssp             TSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHH
T ss_pred             ccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHh
Confidence            411      0122221     1  1566677777   7888888888776654

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.35  E-value=2.5e-13  Score=104.36  Aligned_cols=143  Identities=8%  Similarity=0.030  Sum_probs=82.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+|+|.+|+|||||+|.+++...........+.+.......... ....+.++||||...           +......
T Consensus        24 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~-----------~~~~~~~   91 (191)
T 3dz8_A           24 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHE-KRVKLQIWDTAGQER-----------YRTITTA   91 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETT-TTEEEEEECHHHHHH-----------CHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECC-EEEEEEEEeCCChHH-----------HHHHHHH
Confidence            7899999999999999999998653211111112222211111111 345788999999432           2222333


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH--------hc-CCCCcHHHHHHHHHhhH---------HHHHhhcc-chhhhhhhhH
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA--------AN-GGQPYTDEFLAELKRGA---------TELRDQQA-EVDSLKEYSK  164 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~~---------~~l~~~~~-~i~~is~~~~  164 (231)
                      .+..+|++++|+|+++.-+.....        .. ...|++ .+.++.|...         ..+....+ +++.+|+++|
T Consensus        92 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  170 (191)
T 3dz8_A           92 YYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVI-LVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKEN  170 (191)
T ss_dssp             HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEE-EEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTT
T ss_pred             HHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEE-EEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCC
Confidence            457889999999998432211111        11 233332 3334433110         12222222 6778999999


Q ss_pred             hhHHHHHHHHHHHHH
Q 038053          165 QEISKLMGQMQESYE  179 (231)
Q Consensus       165 ~~i~~l~~~i~~~~~  179 (231)
                      .|+.+++..+.+...
T Consensus       171 ~gi~~l~~~l~~~i~  185 (191)
T 3dz8_A          171 ISVRQAFERLVDAIC  185 (191)
T ss_dssp             BSHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999988877543

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.34  E-value=1.1e-12  Score=100.30  Aligned_cols=137  Identities=11%  Similarity=0.069  Sum_probs=81.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+++|.+|||||||+|.+++.......++.+ .+    ...... .+..+.++||||.......           ...
T Consensus        17 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~-~~----~~~~~~-~~~~~~i~Dt~G~~~~~~~-----------~~~   79 (187)
T 1zj6_A           17 HKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIG-SN----VEEIVI-NNTRFLMWDIGGQESLRSS-----------WNT   79 (187)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTTSCEEEECCSC-SS----CEEEEE-TTEEEEEEECCC----CGG-----------GHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCc-cc----eEEEEE-CCEEEEEEECCCCHhHHHH-----------HHH
Confidence            899999999999999999999765432222211 11    222333 6778899999997542211           112


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH------h----cCCCCcHHHHHHHHHhh----HHHHHhh-----cc----chhhhh
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA------A----NGGQPYTDEFLAELKRG----ATELRDQ-----QA----EVDSLK  160 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~------~----~~~~~~~~~~~~~~~~~----~~~l~~~-----~~----~i~~is  160 (231)
                      .+..+|++++|+|+++.-+.....      .    ....|++ .+.++.|..    ..++.+.     +.    +++.+|
T Consensus        80 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-lv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S  158 (187)
T 1zj6_A           80 YYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLL-IFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACC  158 (187)
T ss_dssp             HHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEE-EEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECB
T ss_pred             HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEE-EEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEcc
Confidence            236789999999998654333222      1    1233333 333443311    0122111     11    567899


Q ss_pred             hhhHhhHHHHHHHHHHHH
Q 038053          161 EYSKQEISKLMGQMQESY  178 (231)
Q Consensus       161 ~~~~~~i~~l~~~i~~~~  178 (231)
                      +++|.|+++++..+.+..
T Consensus       159 a~~g~gi~~l~~~l~~~~  176 (187)
T 1zj6_A          159 ALTGEGLCQGLEWMMSRL  176 (187)
T ss_dssp             TTTTBTHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHH
Confidence            999999999998887643

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.34  E-value=3.2e-12  Score=97.78  Aligned_cols=140  Identities=16%  Similarity=0.168  Sum_probs=79.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+++|.+|||||||+|.|++.....   ...+++.......... .+  ..+.++||||....           ....
T Consensus        22 ~ki~vvG~~~~GKSsli~~l~~~~~~~---~~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~-----------~~~~   86 (190)
T 3con_A           22 YKLVVVGAGGVGKSALTIQLIQNHFVD---EYDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEY-----------SAMR   86 (190)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSSCCS---CCCTTCCEEEEEEEEE-TTEEEEEEEEECCC-------------------
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCCCcc---ccCCccceEEEEEEEE-CCEEEEEEEEECCChHHH-----------HHHH
Confidence            699999999999999999999875321   1222222222222222 33  34789999996531           1112


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH--------h--cCCCCcHHHHHHHHHhh--------HHHHHhhcc-chhhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------A--NGGQPYTDEFLAELKRG--------ATELRDQQA-EVDSLKEY  162 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~--~~~~~~~~~~~~~~~~~--------~~~l~~~~~-~i~~is~~  162 (231)
                      ...+..+|++++|+|+++..+..+..        .  ....|++ .+.++.|..        ...+....+ +++.+|++
T Consensus        87 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~  165 (190)
T 3con_A           87 DQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMV-LVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAK  165 (190)
T ss_dssp             ---CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEE-EEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTT
T ss_pred             HHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEE-EEEECCcCCcccCCHHHHHHHHHHcCCeEEEEeCC
Confidence            23457889999999998543322211        1  1233433 333443310        012222222 67788999


Q ss_pred             hHhhHHHHHHHHHHHHH
Q 038053          163 SKQEISKLMGQMQESYE  179 (231)
Q Consensus       163 ~~~~i~~l~~~i~~~~~  179 (231)
                      ++.|+.+++..+.+.+.
T Consensus       166 ~~~gi~~l~~~l~~~~~  182 (190)
T 3con_A          166 TRQGVEDAFYTLVREIR  182 (190)
T ss_dssp             TCTTHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            99999999888877554

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.34  E-value=2.9e-12  Score=99.53  Aligned_cols=141  Identities=13%  Similarity=0.086  Sum_probs=83.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+|+|.+|+|||||+|.+++......  ..+..+.+........ .+  ..+.++||||...           +....
T Consensus        27 ~ki~lvG~~~vGKSsLi~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~-----------~~~~~   92 (201)
T 2ew1_A           27 FKIVLIGNAGVGKTCLVRRFTQGLFPPG--QGATIGVDFMIKTVEI-NGEKVKLQIWDTAGQER-----------FRSIT   92 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSSCCTT--CCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGG-----------GHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHHhCCCCCC--CCCccceeEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHHHH
Confidence            6999999999999999999987754211  1222222222223333 33  3678999999643           12223


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH--------h-cCCCCcHHHHHHHHHhh------H---HHHHhhcc-chhhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------A-NGGQPYTDEFLAELKRG------A---TELRDQQA-EVDSLKEY  162 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~------~---~~l~~~~~-~i~~is~~  162 (231)
                      ...+..+|++++|+|+++..+.....        . ....|++ .+.++.|..      .   ..+....+ +++.+|++
T Consensus        93 ~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~pii-lv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~  171 (201)
T 2ew1_A           93 QSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITV-LVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAK  171 (201)
T ss_dssp             GGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEE-EEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTT
T ss_pred             HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEE-EEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCC
Confidence            45567899999999998533221111        1 1223332 333443311      0   11221122 56779999


Q ss_pred             hHhhHHHHHHHHHHHHH
Q 038053          163 SKQEISKLMGQMQESYE  179 (231)
Q Consensus       163 ~~~~i~~l~~~i~~~~~  179 (231)
                      +|.|+++++..+.....
T Consensus       172 ~g~gv~~l~~~l~~~i~  188 (201)
T 2ew1_A          172 ESDNVEKLFLDLACRLI  188 (201)
T ss_dssp             TCTTHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            99999999888876543

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.34  E-value=8.7e-13  Score=98.85  Aligned_cols=139  Identities=13%  Similarity=0.047  Sum_probs=78.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+++|.+|+|||||+|.+++......  ..+..+.......... .+  ..+.++||||....           ....
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~~~   72 (170)
T 1z08_A            7 FKVVLLGEGCVGKTSLVLRYCENKFNDK--HITTLGASFLTKKLNI-GGKRVNLAIWDTAGQERF-----------HALG   72 (170)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHCCCCSS--CCCCCSCEEEEEEEES-SSCEEEEEEEECCCC------------------
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCCCCcC--CCCccceEEEEEEEEE-CCEEEEEEEEECCCcHhh-----------hhhH
Confidence            6899999999999999999997754211  1222222222222222 22  35778899996531           1122


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKEY  162 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~~  162 (231)
                      ...+..+|++++|+|+++..+.....         .....|++ .+.++.|..         ...+....+ +++.+|++
T Consensus        73 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  151 (170)
T 1z08_A           73 PIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLC-IVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAK  151 (170)
T ss_dssp             CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEE-EEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTT
T ss_pred             HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEE-EEEECcccccccccCHHHHHHHHHHcCCeEEEecCC
Confidence            33457889999999998532222211         11122222 233333311         012222222 56778999


Q ss_pred             hHhhHHHHHHHHHHH
Q 038053          163 SKQEISKLMGQMQES  177 (231)
Q Consensus       163 ~~~~i~~l~~~i~~~  177 (231)
                      ++.|+++++..+...
T Consensus       152 ~~~gi~~l~~~l~~~  166 (170)
T 1z08_A          152 QNKGIEELFLDLCKR  166 (170)
T ss_dssp             TTBSHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHH
Confidence            999999998887664

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.34  E-value=1.5e-12  Score=99.63  Aligned_cols=137  Identities=14%  Similarity=0.062  Sum_probs=85.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+++|.+|+|||||+|.+++.......+     |.......... .+..+.++||||.......           ...
T Consensus        23 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~-----t~~~~~~~~~~-~~~~~~~~Dt~G~~~~~~~-----------~~~   85 (189)
T 2x77_A           23 IRVLMLGLDNAGKTSILYRLHLGDVVTTVP-----TVGVNLETLQY-KNISFEVWDLGGQTGVRPY-----------WRC   85 (189)
T ss_dssp             EEEEEEEETTSSHHHHHHHTCCSCCEEECS-----STTCCEEEEEE-TTEEEEEEEECCSSSSCCC-----------CSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCcCC-----CCceEEEEEEE-CCEEEEEEECCCCHhHHHH-----------HHH
Confidence            899999999999999999998765432211     21122222333 5778899999997643221           123


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH------hc----CCCCcHHHHHHHHHhhH----HHHHhhcc---------chhhhh
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA------AN----GGQPYTDEFLAELKRGA----TELRDQQA---------EVDSLK  160 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~----~~l~~~~~---------~i~~is  160 (231)
                      .+..+|++++|+|+++.-+.....      ..    ...|++ .+.++.|...    .++.+.+.         +++.+|
T Consensus        86 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  164 (189)
T 2x77_A           86 YFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLL-IFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSS  164 (189)
T ss_dssp             SSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEE-EEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECC
T ss_pred             HhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEE-EEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEcc
Confidence            346889999999998653333221      11    233333 3444443210    12222111         577899


Q ss_pred             hhhHhhHHHHHHHHHHHH
Q 038053          161 EYSKQEISKLMGQMQESY  178 (231)
Q Consensus       161 ~~~~~~i~~l~~~i~~~~  178 (231)
                      ++++.|+++++..+.+..
T Consensus       165 a~~~~gi~~l~~~l~~~i  182 (189)
T 2x77_A          165 SKTGDGLVEGMDWLVERL  182 (189)
T ss_dssp             TTTCTTHHHHHHHHHHHH
T ss_pred             CCCccCHHHHHHHHHHHH
Confidence            999999999998887654

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=99.34  E-value=1.3e-13  Score=115.96  Aligned_cols=87  Identities=10%  Similarity=0.166  Sum_probs=64.7

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-----eEEeeCCcEE
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-----TTVLKDGQVV   75 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-----~~~~~~~~~~   75 (231)
                      +++.|++..++++++|++++|  ..++|+|+||||||||+++|+|...+..    |.+.......     ..........
T Consensus        10 ls~~y~~~~~L~~vsl~i~~G--e~~~llGpsGsGKSTLLr~iaGl~~p~~----G~I~i~G~~i~~~~~~~~~~~r~ig   83 (359)
T 3fvq_A           10 LSKSFQNTPVLNDISLSLDPG--EILFIIGASGCGKTTLLRCLAGFEQPDS----GEISLSGKTIFSKNTNLPVRERRLG   83 (359)
T ss_dssp             EEEEETTEEEEEEEEEEECTT--CEEEEEESTTSSHHHHHHHHHTSSCCSE----EEEEETTEEEESSSCBCCGGGSCCE
T ss_pred             EEEEECCEEEEEeeEEEEcCC--CEEEEECCCCchHHHHHHHHhcCCCCCC----cEEEECCEECcccccccchhhCCEE
Confidence            367899999999999999999  9999999999999999999999988433    3333222111     0111134578


Q ss_pred             EEEeCCCCcCCCCCchHH
Q 038053           76 NVIDTPGLFDSSAGSEFV   93 (231)
Q Consensus        76 ~l~Dtpg~~~~~~~~~~~   93 (231)
                      +++|.+.+++..++.+++
T Consensus        84 ~vfQ~~~l~p~ltV~eni  101 (359)
T 3fvq_A           84 YLVQEGVLFPHLTVYRNI  101 (359)
T ss_dssp             EECTTCCCCTTSCHHHHH
T ss_pred             EEeCCCcCCCCCCHHHHH
Confidence            899999998877665544

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.34  E-value=6.7e-13  Score=102.13  Aligned_cols=140  Identities=13%  Similarity=0.148  Sum_probs=79.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+++|.+|+|||||+|.|++......  ..+..+.+........ .+  ..+.++||||....       .....   
T Consensus        27 ~ki~vvG~~~~GKSsLi~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~-------~~~~~---   93 (192)
T 2il1_A           27 LQVIIIGSRGVGKTSLMERFTDDTFCEA--CKSTVGVDFKIKTVEL-RGKKIRLQIWDTAGQERF-------NSITS---   93 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHCC----------CCTTEEEEEEEEEE-TTEEEEEEEEEECCSGGG-------HHHHH---
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCcC--CCCccceeEEEEEEEE-CCeEEEEEEEeCCCcHHH-------HHHHH---
Confidence            6899999999999999999998764221  2223333333333333 33  46789999996531       11111   


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH--------h-cCCCCcHHHHHHHHHhh---------HHHHHhhc-c-chhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------A-NGGQPYTDEFLAELKRG---------ATELRDQQ-A-EVDSLKE  161 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~---------~~~l~~~~-~-~i~~is~  161 (231)
                       ..+..+|++++|+|+++..+..+..        . ....|++ .+.++.|..         ...+.... . +++.+|+
T Consensus        94 -~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~pii-lV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA  171 (192)
T 2il1_A           94 -AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELL-LVGNKLDCETDREITRQQGEKFAQQITGMRFCEASA  171 (192)
T ss_dssp             -HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEE-EEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBT
T ss_pred             -HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEE-EEEECcccccccccCHHHHHHHHHhcCCCeEEEEeC
Confidence             2234579999999998543332211        1 1233333 333443311         01232222 2 5677899


Q ss_pred             hhHhhHHHHHHHHHHHH
Q 038053          162 YSKQEISKLMGQMQESY  178 (231)
Q Consensus       162 ~~~~~i~~l~~~i~~~~  178 (231)
                      ++|.|+++++..+....
T Consensus       172 ~~g~gi~~l~~~l~~~i  188 (192)
T 2il1_A          172 KDNFNVDEIFLKLVDDI  188 (192)
T ss_dssp             TTTBSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            99999999988877643

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.34  E-value=6.6e-13  Score=103.40  Aligned_cols=141  Identities=13%  Similarity=0.121  Sum_probs=83.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+++|.+|+|||||+|.|++.....  ...+..+.+........ .+  ..+.++||||.......           .
T Consensus        21 ~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~-----------~   86 (213)
T 3cph_A           21 MKILLIGDSGVGKSCLLVRFVEDKFNP--SFITTIGIDFKIKTVDI-NGKKVKLQLWDTAGQERFRTI-----------T   86 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCCCCC--SSSCCCSCCEEEEEEEE-TTEEEEEEEECCTTGGGGTCC-----------C
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCc--ccCCcccceEEEEEEEE-CCEEEEEEEEeCCCcHHHHHH-----------H
Confidence            799999999999999999999775421  12233333333333333 44  46889999996542211           1


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhh--------HHHHHhhcc-chhhhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRG--------ATELRDQQA-EVDSLKEYS  163 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~--------~~~l~~~~~-~i~~is~~~  163 (231)
                      ...+..+|++++|+|+++..+.....         .....|++ .++++.|..        ...+....+ +++.+|+++
T Consensus        87 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  165 (213)
T 3cph_A           87 TAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLL-LVGNKSDMETRVVTADQGEALAKELGIPFIESSAKN  165 (213)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEE-EEEECTTCSSCCSCHHHHHHHHHHHTCCEEECBTTT
T ss_pred             HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEE-EEEECCCCcccccCHHHHHHHHHHcCCEEEEEeCCC
Confidence            12236789999999998532211111         11123332 333443310        012222222 677899999


Q ss_pred             HhhHHHHHHHHHHHHH
Q 038053          164 KQEISKLMGQMQESYE  179 (231)
Q Consensus       164 ~~~i~~l~~~i~~~~~  179 (231)
                      +.|+++++..+.....
T Consensus       166 ~~gi~~l~~~l~~~~~  181 (213)
T 3cph_A          166 DDNVNEIFFTLAKLIQ  181 (213)
T ss_dssp             TBSSHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9999999888876543

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.34  E-value=1.5e-11  Score=100.99  Aligned_cols=153  Identities=11%  Similarity=0.097  Sum_probs=85.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccc----cCCCC----------------------cceee---------------
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKAS----ADSSG----------------------VTKTC---------------   62 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~----~~~~~----------------------~t~~~---------------   62 (231)
                      .+|+++|.+|||||||+|+|+|......+    ...++                      +|.+.               
T Consensus        27 ~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~g~  106 (299)
T 2aka_B           27 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGT  106 (299)
T ss_dssp             CEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCSS
T ss_pred             CeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhccc
Confidence            69999999999999999999998752111    00111                      11110               


Q ss_pred             --------eeeeEEeeCCcEEEEEeCCCCcCCCC--CchHHHHHHHHHHhhhcCCccEEE-EEEECCCCCCHHHHH----
Q 038053           63 --------EMKTTVLKDGQVVNVIDTPGLFDSSA--GSEFVGKEIVKRIGLAKGGIHAVL-VVFSVRSRFSQEEEA----  127 (231)
Q Consensus        63 --------~~~~~~~~~~~~~~l~Dtpg~~~~~~--~~~~~~~~~~~~~~~~~~~~~~il-~vvd~~~~~~~~~~~----  127 (231)
                              ............+.++||||+.....  ..+.....+.......+..++.++ +|+|+++.+...+..    
T Consensus       107 ~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~  186 (299)
T 2aka_B          107 NKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAK  186 (299)
T ss_dssp             TTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHH
T ss_pred             CCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHH
Confidence                    00000111136788999999975321  012222233333334445666554 799998666654421    


Q ss_pred             -h-cCCCCcHHHHHHHHHhhH------HHHHhh-------ccchhhhhhhhHhhHHHHHHHHHHH
Q 038053          128 -A-NGGQPYTDEFLAELKRGA------TELRDQ-------QAEVDSLKEYSKQEISKLMGQMQES  177 (231)
Q Consensus       128 -~-~~~~~~~~~~~~~~~~~~------~~l~~~-------~~~i~~is~~~~~~i~~l~~~i~~~  177 (231)
                       . ....+.+ .++|+.|...      ..+...       ..+++.+||++|.|+++++..+...
T Consensus       187 ~~~~~~~~~i-~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~  250 (299)
T 2aka_B          187 EVDPQGQRTI-GVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  250 (299)
T ss_dssp             HHCTTCSSEE-EEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred             HhCCCCCeEE-EEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence             1 1233333 3444444210      122221       1267789999999999988887663

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.34  E-value=3e-13  Score=107.44  Aligned_cols=69  Identities=13%  Similarity=0.133  Sum_probs=55.2

Q ss_pred             CCCCC--CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEe
Q 038053            2 SSGMG--ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVID   79 (231)
Q Consensus         2 ~~~~~--~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~D   79 (231)
                      ++.|+  +.+++++++|++++|  ..++|+|+||||||||+++|+|...+    ..|.+..          .+...++++
T Consensus        13 ~~~y~~~~~~il~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p----~~G~i~~----------~g~i~~v~q   76 (229)
T 2pze_A           13 TAFWEEGGTPVLKDINFKIERG--QLLAVAGSTGAGKTSLLMMIMGELEP----SEGKIKH----------SGRISFCSQ   76 (229)
T ss_dssp             EECSSTTSCCSEEEEEEEEETT--CEEEEECCTTSSHHHHHHHHTTSSCC----SEEEEEE----------CSCEEEECS
T ss_pred             EEEeCCCCceeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCcC----CccEEEE----------CCEEEEEec
Confidence            56774  578999999999999  99999999999999999999999873    3332222          456778888


Q ss_pred             CCCCcCC
Q 038053           80 TPGLFDS   86 (231)
Q Consensus        80 tpg~~~~   86 (231)
                      .|.+++.
T Consensus        77 ~~~~~~~   83 (229)
T 2pze_A           77 FSWIMPG   83 (229)
T ss_dssp             SCCCCSB
T ss_pred             CCcccCC
Confidence            8887763

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.33  E-value=1e-11  Score=93.85  Aligned_cols=142  Identities=14%  Similarity=0.106  Sum_probs=80.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+++|.+|+|||||+|.+++...... ...+.++.......... .+  ..+.++||||....           ....
T Consensus        11 ~~i~v~G~~~~GKssli~~l~~~~~~~~-~~~~t~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~-----------~~~~   77 (180)
T 2g6b_A           11 FKVMLVGDSGVGKTCLLVRFKDGAFLAG-TFISTVGIDFRNKVLDV-DGVKVKLQMWDTAGQERF-----------RSVT   77 (180)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCCC-CCCCCCSCEEEEEEEEE-TTEEEEEEEEECCCC------------------
T ss_pred             eEEEEECcCCCCHHHHHHHHHhCCCCCC-CcCCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHHH-----------HHHH
Confidence            7999999999999999999998764221 11222222222222222 33  36788999995431           1122


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH--------h-cCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------A-NGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKEY  162 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~~  162 (231)
                      ...+..+|++++|+|+++..+..+..        . ....|++ .+.++.|..         ...+....+ +++.+|++
T Consensus        78 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  156 (180)
T 2g6b_A           78 HAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALM-LLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAK  156 (180)
T ss_dssp             -CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEE-EEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTT
T ss_pred             HHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEE-EEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCC
Confidence            34456789999999998533222111        1 1223333 233333310         012222222 67778999


Q ss_pred             hHhhHHHHHHHHHHHHH
Q 038053          163 SKQEISKLMGQMQESYE  179 (231)
Q Consensus       163 ~~~~i~~l~~~i~~~~~  179 (231)
                      ++.|+++++..+...+.
T Consensus       157 ~~~gi~~l~~~l~~~~~  173 (180)
T 2g6b_A          157 TGLNVDLAFTAIAKELK  173 (180)
T ss_dssp             TCTTHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            99999999888877544

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.33  E-value=1.1e-11  Score=100.75  Aligned_cols=92  Identities=27%  Similarity=0.346  Sum_probs=63.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      ..+|+++|.+|+|||||+|.|+|....... ...++|.......... .+..+.++||||+.+...........+..++ 
T Consensus        39 ~~~I~vvG~~g~GKSSLin~l~~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~-  115 (270)
T 1h65_A           39 SLTILVMGKGGVGKSSTVNSIIGERVVSIS-PFQSEGPRPVMVSRSR-AGFTLNIIDTPGLIEGGYINDMALNIIKSFL-  115 (270)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHTSCCSCCC-SSSCCCSSCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHHT-
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCccccc-CCCCcceeeEEEEEee-CCeEEEEEECCCCCCCccchHHHHHHHHHHh-
Confidence            479999999999999999999998754332 3444554444444444 6778999999999765433333323332221 


Q ss_pred             hhcCCccEEEEEEECC
Q 038053          103 LAKGGIHAVLVVFSVR  118 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~  118 (231)
                       ....+|++++|++++
T Consensus       116 -~~~~~d~il~v~~~d  130 (270)
T 1h65_A          116 -LDKTIDVLLYVDRLD  130 (270)
T ss_dssp             -TTCEECEEEEEEESS
T ss_pred             -hcCCCCEEEEEEeCC
Confidence             235789999999886

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.33  E-value=3e-12  Score=108.94  Aligned_cols=94  Identities=17%  Similarity=0.163  Sum_probs=69.4

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC-----------------cEEEEEe
Q 038053           17 TSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG-----------------QVVNVID   79 (231)
Q Consensus        17 ~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~~l~D   79 (231)
                      .+..|  .+++|+|+||||||||||+|+|...... ...+++|..+..+.... .+                 ..+.++|
T Consensus        16 ~v~~g--~~vgiVG~pnaGKSTL~n~Ltg~~~a~~-~~~p~tTi~p~~G~v~v-~~~r~~~l~~~~~~~~~v~~~i~lvD   91 (392)
T 1ni3_A           16 RPGNN--LKTGIVGMPNVGKSTFFRAITKSVLGNP-ANYPYATIDPEEAKVAV-PDERFDWLCEAYKPKSRVPAFLTVFD   91 (392)
T ss_dssp             SSSSC--CEEEEEECSSSSHHHHHHHHHHSTTTST-TCCSSCCCCTTEEEEEE-CCHHHHHHHHHHCCSEEECEEEEEEC
T ss_pred             cccCC--CEEEEECCCCCCHHHHHHHHHCCCcccc-cCCCceeecceeeeeee-CCcchhhhhhhcccccccCcceEEEe
Confidence            45667  8999999999999999999999764223 35666777666655544 32                 3578999


Q ss_pred             CCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECC
Q 038053           80 TPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVR  118 (231)
Q Consensus        80 tpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~  118 (231)
                      +||++...+..+.+...+...+    ..+|.+++|+|+.
T Consensus        92 ~pGl~~~~s~~e~L~~~fl~~i----r~~d~il~Vvd~~  126 (392)
T 1ni3_A           92 IAGLTKGASTGVGLGNAFLSHV----RAVDAIYQVVRAF  126 (392)
T ss_dssp             TGGGCCCCCSSSSSCHHHHHHH----TTCSEEEEEEECC
T ss_pred             ccccccCCcHHHHHHHHHHHHH----HHHHHHHHHHhcc
Confidence            9999987766555554554433    5679999999986

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.33  E-value=6e-13  Score=100.86  Aligned_cols=141  Identities=16%  Similarity=0.126  Sum_probs=80.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEee-CCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      .+|+++|.+|+|||||+|.+++......  ..+..+........... ....+.++||||......           ...
T Consensus        13 ~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~~~   79 (181)
T 2efe_B           13 AKLVLLGDVGAGKSSLVLRFVKDQFVEF--QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS-----------LAP   79 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHCCCTTT--SCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGG-----------GTH
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCCCCCc--CCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhh-----------hhH
Confidence            6899999999999999999998764321  11222221112222221 134678999999653110           111


Q ss_pred             hhcCCccEEEEEEECCCCCCHHHHH--------h-cCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhhhh
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEEEA--------A-NGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKEYS  163 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~~~  163 (231)
                      ..+..+|++++|+|+++..+.....        . ....|++ .+.++.|..         ...+....+ +++.+|+++
T Consensus        80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  158 (181)
T 2efe_B           80 MYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMA-LAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKT  158 (181)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEE-EEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSS
T ss_pred             HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEE-EEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCC
Confidence            2346789999999998543322211        1 1122332 233333310         012222222 677899999


Q ss_pred             HhhHHHHHHHHHHHH
Q 038053          164 KQEISKLMGQMQESY  178 (231)
Q Consensus       164 ~~~i~~l~~~i~~~~  178 (231)
                      |.|+++++..+...+
T Consensus       159 g~gi~~l~~~l~~~~  173 (181)
T 2efe_B          159 ATNVKEIFYEIARRL  173 (181)
T ss_dssp             CTTHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHH
Confidence            999999998877643

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.33  E-value=8.2e-14  Score=110.29  Aligned_cols=86  Identities=16%  Similarity=0.017  Sum_probs=61.7

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE-E------eeCCcE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT-V------LKDGQV   74 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~-~------~~~~~~   74 (231)
                      ++.|++..++++++|++++|  ..++|+|+||||||||+++|+|...+..    |.+......... .      ......
T Consensus        11 ~~~y~~~~~l~~vsl~i~~G--e~~~iiG~nGsGKSTLl~~l~Gl~~p~~----G~i~~~g~~~~~~~~~~~~~~~~~~i   84 (224)
T 2pcj_A           11 KKVIRGYEILKGISLSVKKG--EFVSIIGASGSGKSTLLYILGLLDAPTE----GKVFLEGKEVDYTNEKELSLLRNRKL   84 (224)
T ss_dssp             EEEETTEEEEEEEEEEEETT--CEEEEEECTTSCHHHHHHHHTTSSCCSE----EEEEETTEECCSSCHHHHHHHHHHHE
T ss_pred             EEEECCEeeEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCc----eEEEECCEECCCCCHHHHHHHHhCcE
Confidence            56788888999999999999  9999999999999999999999987433    322221111000 0      001346


Q ss_pred             EEEEeCCCCcCCCCCchHH
Q 038053           75 VNVIDTPGLFDSSAGSEFV   93 (231)
Q Consensus        75 ~~l~Dtpg~~~~~~~~~~~   93 (231)
                      .++++.|.+++..++.+++
T Consensus        85 ~~v~q~~~l~~~~tv~e~l  103 (224)
T 2pcj_A           85 GFVFQFHYLIPELTALENV  103 (224)
T ss_dssp             EEECSSCCCCTTSCHHHHH
T ss_pred             EEEecCcccCCCCCHHHHH
Confidence            7899999888766655544

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.33  E-value=9.6e-14  Score=112.42  Aligned_cols=86  Identities=14%  Similarity=0.096  Sum_probs=61.7

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-----------E---
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-----------T---   67 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-----------~---   67 (231)
                      ++.|++..++++++|++++|  .+++|+|+||||||||+++|+|...+..    |.+........           .   
T Consensus        13 ~~~y~~~~vl~~vsl~i~~G--e~~~liG~nGsGKSTLlk~l~Gl~~p~~----G~i~~~g~~~~~~~~~~~~~~~~~~~   86 (262)
T 1b0u_A           13 HKRYGGHEVLKGVSLQARAG--DVISIIGSSGSGKSTFLRCINFLEKPSE----GAIIVNGQNINLVRDKDGQLKVADKN   86 (262)
T ss_dssp             EEEETTEEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHTTSSCCSE----EEEEETTEECCEEECTTSSEEESCHH
T ss_pred             EEEECCEEEEEeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCC----cEEEECCEEccccccccccccccChh
Confidence            56788888999999999999  9999999999999999999999987433    32222211100           0   


Q ss_pred             --EeeCCcEEEEEeCCCCcCCCCCchHH
Q 038053           68 --VLKDGQVVNVIDTPGLFDSSAGSEFV   93 (231)
Q Consensus        68 --~~~~~~~~~l~Dtpg~~~~~~~~~~~   93 (231)
                        ........++++.|.+++..++.+++
T Consensus        87 ~~~~~~~~i~~v~Q~~~l~~~ltv~e~l  114 (262)
T 1b0u_A           87 QLRLLRTRLTMVFQHFNLWSHMTVLENV  114 (262)
T ss_dssp             HHHHHHHHEEEECSSCCCCTTSCHHHHH
T ss_pred             hHHHHhcceEEEecCcccCCCCcHHHHH
Confidence              00023467889998888766655543

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.33  E-value=1.1e-12  Score=99.39  Aligned_cols=142  Identities=17%  Similarity=0.148  Sum_probs=79.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEee--CCcEEEEEeCCCCcCCCCCchHHHHHHHHH
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLK--DGQVVNVIDTPGLFDSSAGSEFVGKEIVKR  100 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~  100 (231)
                      ..+|+++|.+|||||||+|.+++......  ..+..+.+.........  ....+.++||||...           +...
T Consensus         8 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-----------~~~~   74 (182)
T 1ky3_A            8 ILKVIILGDSGVGKTSLMHRYVNDKYSQQ--YKATIGADFLTKEVTVDGDKVATMQVWDTAGQER-----------FQSL   74 (182)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTT--C---CCCSCEEEEECCSSSCCEEEEEECCC-------------------
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCcCCcc--cCCccceEEEEEEEEEcCCcEEEEEEEECCCChH-----------hhhh
Confidence            37999999999999999999998764211  12222222222222221  235678999999543           1122


Q ss_pred             HhhhcCCccEEEEEEECCCCCCHHHHH---------hc----CCCCcHHHHHHHHHh----------hHHHHHh-hc-cc
Q 038053          101 IGLAKGGIHAVLVVFSVRSRFSQEEEA---------AN----GGQPYTDEFLAELKR----------GATELRD-QQ-AE  155 (231)
Q Consensus       101 ~~~~~~~~~~il~vvd~~~~~~~~~~~---------~~----~~~~~~~~~~~~~~~----------~~~~l~~-~~-~~  155 (231)
                      ....+..+|++++|+|+++..+.....         ..    ...|++ .+.++.|.          ....+.. .. .+
T Consensus        75 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~  153 (182)
T 1ky3_A           75 GVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFV-ILGNKIDAEESKKIVSEKSAQELAKSLGDIP  153 (182)
T ss_dssp             --CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEE-EEEECTTSCGGGCCSCHHHHHHHHHHTTSCC
T ss_pred             hHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEE-EEEECCccccccccCCHHHHHHHHHhcCCCe
Confidence            234557889999999998532221111         11    233433 23344331          0012222 11 26


Q ss_pred             hhhhhhhhHhhHHHHHHHHHHHH
Q 038053          156 VDSLKEYSKQEISKLMGQMQESY  178 (231)
Q Consensus       156 i~~is~~~~~~i~~l~~~i~~~~  178 (231)
                      ++.+|+++|.|+++++..+....
T Consensus       154 ~~~~Sa~~~~gi~~l~~~l~~~~  176 (182)
T 1ky3_A          154 LFLTSAKNAINVDTAFEEIARSA  176 (182)
T ss_dssp             EEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             EEEEecCCCCCHHHHHHHHHHHH
Confidence            77899999999999998887654

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.33  E-value=7.7e-12  Score=93.33  Aligned_cols=140  Identities=16%  Similarity=0.067  Sum_probs=72.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+++|.+|+|||||+|.+++....... ...+.+..... .. ......+.+.||||.....           .....
T Consensus         3 ~ki~~vG~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~-~~-~~~~~~~~i~D~~g~~~~~-----------~~~~~   68 (166)
T 3q72_A            3 YKVLLLGAPGVGKSALARIFGGVEDGPEA-EAAGHTYDRSI-VV-DGEEASLMVYDIWEQDGGR-----------WLPGH   68 (166)
T ss_dssp             CEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEE-EE-TTEEEEEEEEECC----------------------
T ss_pred             EEEEEECCCCCCHHHHHHHHcCccccCCC-CccccceEEEE-EE-CCEEEEEEEEECCCCccch-----------hhhhh
Confidence            68999999999999999999987654332 23333332111 11 1123456789999965421           11122


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH-------h---cCCCCcHHHHHHHHHhhH---------HHHHhhcc-chhhhhhhh
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA-------A---NGGQPYTDEFLAELKRGA---------TELRDQQA-EVDSLKEYS  163 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~-------~---~~~~~~~~~~~~~~~~~~---------~~l~~~~~-~i~~is~~~  163 (231)
                      .+..+|++++|+|+++.-+.....       .   ....|++ .+.++.|...         ..+....+ +++.+|+++
T Consensus        69 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  147 (166)
T 3q72_A           69 CMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPII-LVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAAL  147 (166)
T ss_dssp             ----CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEE-EEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGG
T ss_pred             hhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEeccccccccccCHHHHHHHHHHhCCcEEEeccCC
Confidence            346789999999998532222211       1   1233433 3334433110         12222222 677899999


Q ss_pred             HhhHHHHHHHHHHHH
Q 038053          164 KQEISKLMGQMQESY  178 (231)
Q Consensus       164 ~~~i~~l~~~i~~~~  178 (231)
                      |.|+++++..+....
T Consensus       148 ~~gi~~l~~~l~~~~  162 (166)
T 3q72_A          148 HHNVQALFEGVVRQI  162 (166)
T ss_dssp             TBSHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHH
Confidence            999999998887754

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.33  E-value=6e-13  Score=99.65  Aligned_cols=141  Identities=12%  Similarity=0.116  Sum_probs=80.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+++|.+|+|||||+|.+++......  ..++.+.+........ .+  ..+.++||||.......           .
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~-----------~   69 (170)
T 1g16_A            4 MKILLIGDSGVGKSCLLVRFVEDKFNPS--FITTIGIDFKIKTVDI-NGKKVKLQIWDTAGQERFRTI-----------T   69 (170)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCCCC---------CCEEEEEEES-SSCEEEEEEECCTTGGGTSCC-----------C
T ss_pred             eEEEEECcCCCCHHHHHHHHHhCCCCCC--CCCccceeEEEEEEEE-CCEEEEEEEEeCCCChhhhhh-----------H
Confidence            6899999999999999999998764211  1222222222222332 22  36788999996543211           1


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH--------h-cCCCCcHHHHHHHHHhh--------HHHHHhhcc-chhhhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------A-NGGQPYTDEFLAELKRG--------ATELRDQQA-EVDSLKEYS  163 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~--------~~~l~~~~~-~i~~is~~~  163 (231)
                      ...+..+|++++|+|+++..+.....        . ....|++ .+.++.|..        ...+....+ +++.+|+++
T Consensus        70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  148 (170)
T 1g16_A           70 TAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLL-LVGNKSDMETRVVTADQGEALAKELGIPFIESSAKN  148 (170)
T ss_dssp             HHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEE-EEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTT
T ss_pred             HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEE-EEEECccCCcCccCHHHHHHHHHHcCCeEEEEECCC
Confidence            12236789999999998532221111        1 1223333 333443310        012222222 677899999


Q ss_pred             HhhHHHHHHHHHHHHH
Q 038053          164 KQEISKLMGQMQESYE  179 (231)
Q Consensus       164 ~~~i~~l~~~i~~~~~  179 (231)
                      |.|+++++..+.+...
T Consensus       149 ~~gv~~l~~~l~~~~~  164 (170)
T 1g16_A          149 DDNVNEIFFTLAKLIQ  164 (170)
T ss_dssp             TBSHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9999999888876543

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.32  E-value=3.6e-12  Score=95.44  Aligned_cols=139  Identities=17%  Similarity=0.107  Sum_probs=77.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEe-eCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      .+|+++|.+|+|||||+|.+++...........+.+..   ..... .....+.++||||.....    .   ....   
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~~~~Dt~G~~~~~----~---~~~~---   70 (172)
T 2erx_A            4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR---QVISCDKSICTLQITDTTGSHQFP----A---MQRL---   70 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE---EEEEETTEEEEEEEEECCSCSSCH----H---HHHH---
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE---EEEEECCEEEEEEEEECCCchhhH----H---HHHH---
Confidence            78999999999999999999986532110111111111   11111 012357899999976421    1   1111   


Q ss_pred             hhcCCccEEEEEEECCCCCCHHHHH--------hc---CCCCcHHHHHHHHHhhH---------HHHHhhcc-chhhhhh
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEEEA--------AN---GGQPYTDEFLAELKRGA---------TELRDQQA-EVDSLKE  161 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~~~--------~~---~~~~~~~~~~~~~~~~~---------~~l~~~~~-~i~~is~  161 (231)
                       .+..+|++++|+|+++..+.....        ..   ...|++ .+.++.|...         ..+....+ +++.+|+
T Consensus        71 -~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii-~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa  148 (172)
T 2erx_A           71 -SISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIM-LVGNKCDESPSREVQSSEAEALARTWKCAFMETSA  148 (172)
T ss_dssp             -HHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEE-EEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBT
T ss_pred             -hcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEE-EEEEccccccccccCHHHHHHHHHHhCCeEEEecC
Confidence             223469999999998432221111        11   234443 3344444210         11212122 6678999


Q ss_pred             hhHhhHHHHHHHHHHH
Q 038053          162 YSKQEISKLMGQMQES  177 (231)
Q Consensus       162 ~~~~~i~~l~~~i~~~  177 (231)
                      ++|.|+++++..+.+.
T Consensus       149 ~~~~gi~~l~~~l~~~  164 (172)
T 2erx_A          149 KLNHNVKELFQELLNL  164 (172)
T ss_dssp             TTTBSHHHHHHHHHHT
T ss_pred             CCCcCHHHHHHHHHHH
Confidence            9999999999887653

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.32  E-value=1.8e-12  Score=98.71  Aligned_cols=135  Identities=12%  Similarity=0.081  Sum_probs=84.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+++|.+|+|||||+|.+++.......+ ..+.+.    ..... .+..+.++||||......           ....
T Consensus        22 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-t~~~~~----~~~~~-~~~~~~i~Dt~G~~~~~~-----------~~~~   84 (181)
T 2h17_A           22 HKVIIVGLDNAGKTTILYQFSMNEVVHTSP-TIGSNV----EEIVI-NNTRFLMWDIGGQESLRS-----------SWNT   84 (181)
T ss_dssp             EEEEEEEETTSSHHHHHHHHHTTSCEEEEC-CSSSSC----EEEEE-TTEEEEEEEESSSGGGTC-----------GGGG
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCccCC-cCceee----EEEEE-CCEEEEEEECCCCHhHHH-----------HHHH
Confidence            799999999999999999999876532222 222222    22333 678889999999754221           1233


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH------h----cCCCCcHHHHHHHHHhh----HHHHHhhc--------c-chhhhh
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA------A----NGGQPYTDEFLAELKRG----ATELRDQQ--------A-EVDSLK  160 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~------~----~~~~~~~~~~~~~~~~~----~~~l~~~~--------~-~i~~is  160 (231)
                      .+..+|++++|+|+++..+.....      .    ....|++ .+.++.|..    ..++.+.+        . +++.+|
T Consensus        85 ~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~pii-lv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S  163 (181)
T 2h17_A           85 YYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLL-IFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACC  163 (181)
T ss_dssp             GGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEE-EEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECB
T ss_pred             HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEE-EEEECCCcccCCCHHHHHHHhCcccccCCceEEEEcc
Confidence            457889999999998654433321      1    1333333 334444311    01222221        1 567899


Q ss_pred             hhhHhhHHHHHHHHHH
Q 038053          161 EYSKQEISKLMGQMQE  176 (231)
Q Consensus       161 ~~~~~~i~~l~~~i~~  176 (231)
                      ++++.|+++++..+.+
T Consensus       164 a~~g~gi~~l~~~l~~  179 (181)
T 2h17_A          164 ALTGEGLCQGLEWMMS  179 (181)
T ss_dssp             TTTTBTHHHHHHHHHT
T ss_pred             CCCCcCHHHHHHHHHh
Confidence            9999999998887653

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.32  E-value=1.7e-13  Score=115.95  Aligned_cols=87  Identities=21%  Similarity=0.211  Sum_probs=65.3

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEEeeCCcEEEEEe
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTVLKDGQVVNVID   79 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~D   79 (231)
                      +++.|++..++++++|++++|  ..++|+|+||||||||+++|+|...+..|    .+....... ..........+++|
T Consensus         9 l~~~yg~~~~L~~vsl~i~~G--e~~~llGpsGsGKSTLLr~iaGl~~p~~G----~I~i~G~~~~~~~~~~r~ig~VfQ   82 (381)
T 3rlf_A            9 VTKAWGEVVVSKDINLDIHEG--EFVVFVGPSGCGKSTLLRMIAGLETITSG----DLFIGEKRMNDTPPAERGVGMVFQ   82 (381)
T ss_dssp             EEEEETTEEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHHTSSCCSEE----EEEETTEECTTCCGGGSCEEEECT
T ss_pred             EEEEECCEEEEeeeEEEECCC--CEEEEEcCCCchHHHHHHHHHcCCCCCCe----EEEECCEECCCCCHHHCCEEEEec
Confidence            367899999999999999999  99999999999999999999999884333    222221110 00011245788999


Q ss_pred             CCCCcCCCCCchHH
Q 038053           80 TPGLFDSSAGSEFV   93 (231)
Q Consensus        80 tpg~~~~~~~~~~~   93 (231)
                      .+.+++..++.+++
T Consensus        83 ~~~l~p~ltV~eni   96 (381)
T 3rlf_A           83 SYALYPHLSVAENM   96 (381)
T ss_dssp             TCCCCTTSCHHHHH
T ss_pred             CCcCCCCCCHHHHH
Confidence            99999987776654

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.32  E-value=6.1e-13  Score=102.17  Aligned_cols=141  Identities=11%  Similarity=0.068  Sum_probs=80.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+++|.+|+|||||+|.|++......  ..+..+.......... .+  ..+.++||||.......           .
T Consensus        22 ~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~-----------~   87 (191)
T 2a5j_A           22 FKYIIIGDTGVGKSCLLLQFTDKRFQPV--HDLTIGVEFGARMVNI-DGKQIKLQIWDTAGQESFRSI-----------T   87 (191)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCCC-------CCSSEEEEEEEE-TTEEEEEEEECCTTGGGTSCC-----------C
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCCCCCC--CCCcccceeEEEEEEE-CCEEEEEEEEECCCchhhhhh-----------H
Confidence            7899999999999999999998764221  1122222222222222 33  46789999996543211           1


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH--------h-cCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------A-NGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKEY  162 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~~  162 (231)
                      ...+..+|++++|+|+++..+..+..        . ....|++ .+.++.|..         ...+....+ +++.+|++
T Consensus        88 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~pii-lv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~  166 (191)
T 2a5j_A           88 RSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIM-LIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAK  166 (191)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEE-EEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTT
T ss_pred             HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEE-EEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCC
Confidence            12235789999999998532222111        1 1223332 233443311         012221122 66778999


Q ss_pred             hHhhHHHHHHHHHHHHH
Q 038053          163 SKQEISKLMGQMQESYE  179 (231)
Q Consensus       163 ~~~~i~~l~~~i~~~~~  179 (231)
                      ++.|+++++..+.....
T Consensus       167 ~~~gi~~l~~~l~~~i~  183 (191)
T 2a5j_A          167 TACNVEEAFINTAKEIY  183 (191)
T ss_dssp             TCTTHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            99999999888876543

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.32  E-value=7.5e-13  Score=102.79  Aligned_cols=141  Identities=17%  Similarity=0.128  Sum_probs=84.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+|+|.+|+|||||+|.|++......  ..+..+.......... .+  ..+.++||||.......           .
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~-----------~   74 (206)
T 2bcg_Y            9 FKLLLIGNSGVGKSCLLLRFSDDTYTND--YISTIGVDFKIKTVEL-DGKTVKLQIWDTAGQERFRTI-----------T   74 (206)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCCCTT--CCCSSCCCEEEEEEEE-TTEEEEEEEECCTTTTTTTCC-----------C
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCcccceeEEEEEEE-CCEEEEEEEEeCCChHHHHHH-----------H
Confidence            6899999999999999999998764221  2223333222223333 33  36889999997543221           1


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH--------h-cCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------A-NGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKEY  162 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~~  162 (231)
                      ...+..+|++++|+|+++..+.....        . ....|++ .+.++.|..         ...+....+ +++.+|++
T Consensus        75 ~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  153 (206)
T 2bcg_Y           75 SSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKL-LVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSAL  153 (206)
T ss_dssp             GGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEE-EEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTT
T ss_pred             HHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEE-EEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCC
Confidence            23457789999999998533322211        1 1222322 233333310         012222222 67789999


Q ss_pred             hHhhHHHHHHHHHHHHH
Q 038053          163 SKQEISKLMGQMQESYE  179 (231)
Q Consensus       163 ~~~~i~~l~~~i~~~~~  179 (231)
                      +|.|+++++..+.....
T Consensus       154 ~g~gi~~l~~~l~~~i~  170 (206)
T 2bcg_Y          154 DSTNVEDAFLTMARQIK  170 (206)
T ss_dssp             TCTTHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            99999999988877543

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.32  E-value=1.5e-11  Score=99.50  Aligned_cols=92  Identities=28%  Similarity=0.363  Sum_probs=64.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      ..+|+++|.+|+|||||+|+|+|....... ...++|.......... .+..+.++||||+.+.....+.....+..++ 
T Consensus        36 ~~~I~lvG~~g~GKSSLin~l~~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l-  112 (262)
T 3def_A           36 SMTVLVLGKGGVGKSSTVNSLIGEQVVRVS-PFQAEGLRPVMVSRTM-GGFTINIIDTPGLVEAGYVNHQALELIKGFL-  112 (262)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTSCCSCCC-SSCC-CCCCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHHT-
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCCcccC-CCCCcceeeEEEEEEE-CCeeEEEEECCCCCCcccchHHHHHHHHHHH-
Confidence            379999999999999999999998753332 3455555555444445 7789999999999765443333333333333 


Q ss_pred             hhcCCccEEEEEEECC
Q 038053          103 LAKGGIHAVLVVFSVR  118 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~  118 (231)
                       ....+|++++|+++.
T Consensus       113 -~~~~~~~il~V~~~d  127 (262)
T 3def_A          113 -VNRTIDVLLYVDRLD  127 (262)
T ss_dssp             -TTCEECEEEEEEESS
T ss_pred             -hcCCCCEEEEEEcCC
Confidence             235789999998876

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.32  E-value=1.3e-13  Score=111.25  Aligned_cols=85  Identities=16%  Similarity=0.150  Sum_probs=62.2

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee---eEEeeCCcEEEEE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK---TTVLKDGQVVNVI   78 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~l~   78 (231)
                      ++.|++..++++++|++++|  .+++|+|+||||||||+++|+|...+..|    .+.......   .... .....+++
T Consensus        22 ~~~y~~~~vl~~vsl~i~~G--ei~~l~G~NGsGKSTLlk~l~Gl~~p~~G----~I~~~g~~~~~~~~~~-~~~i~~v~   94 (256)
T 1vpl_A           22 RKRIGKKEILKGISFEIEEG--EIFGLIGPNGAGKTTTLRIISTLIKPSSG----IVTVFGKNVVEEPHEV-RKLISYLP   94 (256)
T ss_dssp             EEEETTEEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHTTSSCCSEE----EEEETTEETTTCHHHH-HTTEEEEC
T ss_pred             EEEECCEEEEEeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhcCCCCCce----EEEECCEECCccHHHH-hhcEEEEc
Confidence            56788888999999999999  99999999999999999999999874332    222211100   0001 24578899


Q ss_pred             eCCCCcCCCCCchHH
Q 038053           79 DTPGLFDSSAGSEFV   93 (231)
Q Consensus        79 Dtpg~~~~~~~~~~~   93 (231)
                      +.|.+++..++.+++
T Consensus        95 q~~~l~~~ltv~enl  109 (256)
T 1vpl_A           95 EEAGAYRNMQGIEYL  109 (256)
T ss_dssp             TTCCCCTTSBHHHHH
T ss_pred             CCCCCCCCCcHHHHH
Confidence            999888766655544

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.32  E-value=1.7e-11  Score=92.16  Aligned_cols=142  Identities=18%  Similarity=0.136  Sum_probs=77.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHH
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKR  100 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~  100 (231)
                      ..+|+++|.+|+|||||+|.|++....... ...+.+...  ..... .+  ..+.++||||.....         ....
T Consensus         4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~--~~~~~-~~~~~~~~~~D~~g~~~~~---------~~~~   70 (175)
T 2nzj_A            4 LYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYE--RTLTV-DGEDTTLVVVDTWEAEKLD---------KSWS   70 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEE--EEEEE-TTEEEEEEEECCC----------------CHH
T ss_pred             EEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeE--EEEEE-CCEEEEEEEEecCCCCccc---------hhhh
Confidence            378999999999999999999998653322 223333221  12222 33  357799999975410         0111


Q ss_pred             HhhhcCCccEEEEEEECCCCCCHHHHH------h----cCCCCcHHHHHHHHHhhH---------HHHHhhcc-chhhhh
Q 038053          101 IGLAKGGIHAVLVVFSVRSRFSQEEEA------A----NGGQPYTDEFLAELKRGA---------TELRDQQA-EVDSLK  160 (231)
Q Consensus       101 ~~~~~~~~~~il~vvd~~~~~~~~~~~------~----~~~~~~~~~~~~~~~~~~---------~~l~~~~~-~i~~is  160 (231)
                      ....+..+|++++|+|+++..+.....      .    ....|++ .+.++.|...         ..+....+ +++.+|
T Consensus        71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~pii-lv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S  149 (175)
T 2nzj_A           71 QESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPII-LVGNKADLARCREVSVEEGRACAVVFDCKFIETS  149 (175)
T ss_dssp             HHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEE-EEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECB
T ss_pred             HHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEE-EEEEChhhccccccCHHHHHHHHHHcCCeEEEEe
Confidence            123346789999999998532222111      1    1133433 3334433110         11222222 677899


Q ss_pred             hhhHhhHHHHHHHHHHHH
Q 038053          161 EYSKQEISKLMGQMQESY  178 (231)
Q Consensus       161 ~~~~~~i~~l~~~i~~~~  178 (231)
                      +++|.|+++++..+....
T Consensus       150 a~~g~gi~~l~~~l~~~~  167 (175)
T 2nzj_A          150 ATLQHNVAELFEGVVRQL  167 (175)
T ss_dssp             TTTTBSHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHH
Confidence            999999999988887654

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.32  E-value=2.4e-12  Score=99.60  Aligned_cols=142  Identities=18%  Similarity=0.132  Sum_probs=82.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEe-eCCcEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      ..+|+|+|.+|||||||+|.|++.....   ....++.......... .....+.++||||.......           .
T Consensus        24 ~~ki~vvG~~~~GKSsli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-----------~   89 (201)
T 3oes_A           24 YRKVVILGYRCVGKTSLAHQFVEGEFSE---GYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSIL-----------P   89 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCS---CCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCC-----------C
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCC---CCCCccceEEEEEEEECCEEEEEEEEECCCccchHHH-----------H
Confidence            3899999999999999999999876531   1111111111111111 13456789999997643221           2


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH------h----cCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA------A----NGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKE  161 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~------~----~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~  161 (231)
                      ...+..+|++++|+|+++..+.....      .    ....|++ .+.++.|..         ...+....+ +++.+|+
T Consensus        90 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa  168 (201)
T 3oes_A           90 YSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVV-LVGNKADLSPEREVQAVEGKKLAESWGATFMESSA  168 (201)
T ss_dssp             GGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEE-EEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCT
T ss_pred             HHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECccCccccccCHHHHHHHHHHhCCeEEEEeC
Confidence            23456789999999998432222211      1    1123433 333443311         012222222 6778999


Q ss_pred             hhHhhHHHHHHHHHHHHH
Q 038053          162 YSKQEISKLMGQMQESYE  179 (231)
Q Consensus       162 ~~~~~i~~l~~~i~~~~~  179 (231)
                      +++.|+++++..+...+.
T Consensus       169 ~~~~~v~~l~~~l~~~i~  186 (201)
T 3oes_A          169 RENQLTQGIFTKVIQEIA  186 (201)
T ss_dssp             TCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHH
Confidence            999999999888877543

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.32  E-value=9.4e-13  Score=101.98  Aligned_cols=141  Identities=14%  Similarity=0.088  Sum_probs=58.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcce--eeeeeeEEeeC----CcEEEEEeCCCCcCCCCCchHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTK--TCEMKTTVLKD----GQVVNVIDTPGLFDSSAGSEFVGKEI   97 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~--~~~~~~~~~~~----~~~~~l~Dtpg~~~~~~~~~~~~~~~   97 (231)
                      .+|+++|.+|+|||||+|.|++......  .....|.  +........ .    ...+.++||||...           +
T Consensus        21 ~~i~v~G~~~~GKssli~~l~~~~~~~~--~~~~~t~~~~~~~~~~~~-~~~~~~~~~~l~Dt~G~~~-----------~   86 (208)
T 2yc2_C           21 CKVAVVGEATVGKSALISMFTSKGSKFL--KDYAMTSGVEVVVAPVTI-PDTTVSVELFLLDTAGSDL-----------Y   86 (208)
T ss_dssp             EEEEEC------------------------------------CEEEEC-TTSSEEEEEEEEETTTTHH-----------H
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccc--CCCCCccceEEEEEEEEE-CCcccEEEEEEEECCCcHH-----------H
Confidence            6999999999999999999998732111  1111122  222222333 3    34688999999642           2


Q ss_pred             HHHHhhhcCCccEEEEEEECCCCCCHHHHH--------hc----CCCCcHHHHHHHHHhh----------HHHHHhhcc-
Q 038053           98 VKRIGLAKGGIHAVLVVFSVRSRFSQEEEA--------AN----GGQPYTDEFLAELKRG----------ATELRDQQA-  154 (231)
Q Consensus        98 ~~~~~~~~~~~~~il~vvd~~~~~~~~~~~--------~~----~~~~~~~~~~~~~~~~----------~~~l~~~~~-  154 (231)
                      .......+..+|++++|+|+++..+.....        ..    ...|++ .+.++.|..          ...+....+ 
T Consensus        87 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~pii-lv~nK~Dl~~~~~~v~~~~~~~~~~~~~~  165 (208)
T 2yc2_C           87 KEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAV-LVANKTDLPPQRHQVRLDMAQDWATTNTL  165 (208)
T ss_dssp             HHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEE-EEEECC-------CCCHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEE-EEEECcccchhhccCCHHHHHHHHHHcCC
Confidence            233445567899999999998543322211        11    233443 233333210          012222222 


Q ss_pred             chhhhhhhh-HhhHHHHHHHHHHHHH
Q 038053          155 EVDSLKEYS-KQEISKLMGQMQESYE  179 (231)
Q Consensus       155 ~i~~is~~~-~~~i~~l~~~i~~~~~  179 (231)
                      +++.+|+++ +.|+.+++..+.....
T Consensus       166 ~~~~~Sa~~~~~gi~~l~~~i~~~~~  191 (208)
T 2yc2_C          166 DFFDVSANPPGKDADAPFLSIATTFY  191 (208)
T ss_dssp             EEEECCC-------CHHHHHHHHHHH
T ss_pred             EEEEeccCCCCcCHHHHHHHHHHHHH
Confidence            677899999 9999999888877543

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.32  E-value=3.3e-13  Score=108.67  Aligned_cols=74  Identities=14%  Similarity=0.009  Sum_probs=58.3

Q ss_pred             CCCCC-CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeC
Q 038053            2 SSGMG-ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDT   80 (231)
Q Consensus         2 ~~~~~-~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dt   80 (231)
                      ++.|+ +..++++++|++++|  .+++|+|+||||||||+++|+|...+    ..|.+.         . .....++++.
T Consensus        11 ~~~y~~~~~vl~~isl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p----~~G~I~---------~-~~~i~~v~q~   74 (253)
T 2nq2_C           11 GFYYQAENFLFQQLNFDLNKG--DILAVLGQNGCGKSTLLDLLLGIHRP----IQGKIE---------V-YQSIGFVPQF   74 (253)
T ss_dssp             EEEETTTTEEEEEEEEEEETT--CEEEEECCSSSSHHHHHHHHTTSSCC----SEEEEE---------E-CSCEEEECSC
T ss_pred             EEEeCCCCeEEEEEEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CCcEEE---------E-eccEEEEcCC
Confidence            56777 788999999999999  99999999999999999999999873    333222         1 4557788888


Q ss_pred             CCCcCCCCCch
Q 038053           81 PGLFDSSAGSE   91 (231)
Q Consensus        81 pg~~~~~~~~~   91 (231)
                      |.+++..++.+
T Consensus        75 ~~~~~~~tv~e   85 (253)
T 2nq2_C           75 FSSPFAYSVLD   85 (253)
T ss_dssp             CCCSSCCBHHH
T ss_pred             CccCCCCCHHH
Confidence            88776554433

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.31  E-value=2.6e-12  Score=100.50  Aligned_cols=139  Identities=15%  Similarity=0.046  Sum_probs=81.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceee--eeeeEEeeC-----------CcEEEEEeCCCCcCCCCCc
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTC--EMKTTVLKD-----------GQVVNVIDTPGLFDSSAGS   90 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~--~~~~~~~~~-----------~~~~~l~Dtpg~~~~~~~~   90 (231)
                      .+|+|+|.+|||||||+|.|++....    .....|...  .........           ...+.++||||...     
T Consensus        26 ~ki~vvG~~~~GKSsLi~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~-----   96 (217)
T 2f7s_A           26 IKLLALGDSGVGKTTFLYRYTDNKFN----PKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQER-----   96 (217)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHCSCCC----CEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHH-----
T ss_pred             EEEEEECcCCCCHHHHHHHHhcCCCC----cCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHh-----
Confidence            68999999999999999999987542    111112111  111122211           35688999999432     


Q ss_pred             hHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH-----hc-----CCCCcHHHHHHHHHhhH---------HHHHh
Q 038053           91 EFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA-----AN-----GGQPYTDEFLAELKRGA---------TELRD  151 (231)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~-----~~-----~~~~~~~~~~~~~~~~~---------~~l~~  151 (231)
                            +.......+..+|++++|+|+++..+..+..     ..     ...|++ .++++.|...         ..+..
T Consensus        97 ------~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~pii-lV~NK~Dl~~~~~v~~~~~~~~~~  169 (217)
T 2f7s_A           97 ------FRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV-LIGNKADLPDQREVNERQARELAD  169 (217)
T ss_dssp             ------HHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEE-EEEECTTCGGGCCSCHHHHHHHHH
T ss_pred             ------HHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEE-EEEECCccccccccCHHHHHHHHH
Confidence                  2222334457889999999998543332222     11     223333 3344443110         12222


Q ss_pred             hcc-chhhhhhhhHhhHHHHHHHHHHHH
Q 038053          152 QQA-EVDSLKEYSKQEISKLMGQMQESY  178 (231)
Q Consensus       152 ~~~-~i~~is~~~~~~i~~l~~~i~~~~  178 (231)
                      ..+ +++.+|++++.|+++++..+.+..
T Consensus       170 ~~~~~~~~~Sa~~g~gi~~l~~~l~~~i  197 (217)
T 2f7s_A          170 KYGIPYFETSAATGQNVEKAVETLLDLI  197 (217)
T ss_dssp             HTTCCEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred             HCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            222 677899999999999988877654

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.31  E-value=1.6e-12  Score=100.12  Aligned_cols=138  Identities=12%  Similarity=0.066  Sum_probs=80.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           22 GKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        22 ~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      ...+|+++|.+|||||||+|.+++.......+     |.......... .+..+.++||||.......           .
T Consensus        28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~-----t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~-----------~   90 (192)
T 2b6h_A           28 KQMRILMVGLDAAGKTTILYKLKLGEIVTTIP-----TIGFNVETVEY-KNICFTVWDVGGQDKIRPL-----------W   90 (192)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCSSCCEEEEE-----ETTEEEEEEEE-TTEEEEEEECC-----CTT-----------H
T ss_pred             CccEEEEECCCCCCHHHHHHHHHhCCccccCC-----cCceeEEEEEE-CCEEEEEEECCCCHhHHHH-----------H
Confidence            34899999999999999999998765421111     22222223333 6778899999997542211           1


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH------hc----CCCCcHHHHHHHHHhhH----HHHHhhcc---------chhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA------AN----GGQPYTDEFLAELKRGA----TELRDQQA---------EVDS  158 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~----~~l~~~~~---------~i~~  158 (231)
                      ...+..+|++++|+|+++..+.....      ..    ...|++ .+.++.|...    .++...+.         +++.
T Consensus        91 ~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~pii-lv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~  169 (192)
T 2b6h_A           91 RHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLL-VFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQA  169 (192)
T ss_dssp             HHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEE-EEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEE
T ss_pred             HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEE-EEEECCCCCCCCCHHHHHHHhCcccccCCceEEEE
Confidence            11235679999999998543322211      11    133333 3344433110    12222211         4677


Q ss_pred             hhhhhHhhHHHHHHHHHHH
Q 038053          159 LKEYSKQEISKLMGQMQES  177 (231)
Q Consensus       159 is~~~~~~i~~l~~~i~~~  177 (231)
                      +|+++|.|+++++..+...
T Consensus       170 ~SA~~g~gi~~l~~~l~~~  188 (192)
T 2b6h_A          170 TCATQGTGLYDGLDWLSHE  188 (192)
T ss_dssp             CBTTTTBTHHHHHHHHHHH
T ss_pred             CcCCCcCCHHHHHHHHHHH
Confidence            9999999999998887654

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.31  E-value=2.3e-12  Score=99.79  Aligned_cols=141  Identities=12%  Similarity=0.102  Sum_probs=78.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+++|.+|||||||+|.|++......  ..+..+.......... .+  ..+.++||||......           ..
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~-----------~~   91 (200)
T 2o52_A           26 FKFLVIGSAGTGKSCLLHQFIENKFKQD--SNHTIGVEFGSRVVNV-GGKTVKLQIWDTAGQERFRS-----------VT   91 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHC--------------CCEEEEEEEE-TTEEEEEEEECCTTHHHHSC-----------CC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhCCCCcc--CCCcccceeEEEEEEE-CCeeeEEEEEcCCCcHhHHH-----------HH
Confidence            7999999999999999999998764221  1222222222222222 33  5788999999532111           11


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhhH------H---HHHhhcc-chhhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRGA------T---ELRDQQA-EVDSLKEY  162 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~------~---~l~~~~~-~i~~is~~  162 (231)
                      ...+..+|++++|+|+++..+.....         .....|++ .+.++.|...      .   .+....+ +++.+|++
T Consensus        92 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~  170 (200)
T 2o52_A           92 RSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVI-LCGNKKDLDPEREVTFLEASRFAQENELMFLETSAL  170 (200)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEE-EEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTT
T ss_pred             HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEE-EEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCC
Confidence            22346789999999998533222211         11233333 3334443210      1   1111112 56778999


Q ss_pred             hHhhHHHHHHHHHHHHH
Q 038053          163 SKQEISKLMGQMQESYE  179 (231)
Q Consensus       163 ~~~~i~~l~~~i~~~~~  179 (231)
                      +|.|+++++..+.....
T Consensus       171 ~g~gi~~l~~~l~~~i~  187 (200)
T 2o52_A          171 TGENVEEAFLKCARTIL  187 (200)
T ss_dssp             TCTTHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            99999999888876543

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.31  E-value=1.4e-13  Score=111.39  Aligned_cols=86  Identities=16%  Similarity=0.102  Sum_probs=61.3

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee---E--EeeCCcEEE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT---T--VLKDGQVVN   76 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~---~--~~~~~~~~~   76 (231)
                      ++.|++..++++++|++++|  .+++|+|+||||||||+++|+|...+..    |.+........   .  ........+
T Consensus        31 ~~~y~~~~vL~~vsl~i~~G--ei~~liG~NGsGKSTLlk~l~Gl~~p~~----G~I~~~g~~i~~~~~~~~~~~~~i~~  104 (263)
T 2olj_A           31 KKSFGSLEVLKGINVHIREG--EVVVVIGPSGSGKSTFLRCLNLLEDFDE----GEIIIDGINLKAKDTNLNKVREEVGM  104 (263)
T ss_dssp             EEEETTEEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHTTSSCCSE----EEEEETTEESSSTTCCHHHHHHHEEE
T ss_pred             EEEECCEEEEEeeEEEEcCC--CEEEEEcCCCCcHHHHHHHHHcCCCCCC----cEEEECCEECCCccccHHHHhCcEEE
Confidence            56788888999999999999  9999999999999999999999987433    33322211100   0  000234678


Q ss_pred             EEeCCCCcCCCCCchHH
Q 038053           77 VIDTPGLFDSSAGSEFV   93 (231)
Q Consensus        77 l~Dtpg~~~~~~~~~~~   93 (231)
                      +++.|.+++..++.+++
T Consensus       105 v~Q~~~l~~~~tv~e~l  121 (263)
T 2olj_A          105 VFQRFNLFPHMTVLNNI  121 (263)
T ss_dssp             ECSSCCCCTTSCHHHHH
T ss_pred             EeCCCcCCCCCCHHHHH
Confidence            89988888766555443

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.31  E-value=2.5e-12  Score=99.97  Aligned_cols=139  Identities=15%  Similarity=0.103  Sum_probs=80.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCc--EEEEEeCCCCcCCCCCchHHHHHHHH
Q 038053           22 GKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAGSEFVGKEIVK   99 (231)
Q Consensus        22 ~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~Dtpg~~~~~~~~~~~~~~~~~   99 (231)
                      ...+|+++|.+|||||||+|.+++.....   ...+++.......... .+.  .+.++||||.....           .
T Consensus        29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~---~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~-----------~   93 (204)
T 4gzl_A           29 QAIKCVVVGDGAVGKTCLLISYTTNAFPG---EYIPTVFDNYSANVMV-DGKPVNLGLWDTAGLEDYD-----------R   93 (204)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHHSCCCC----CCCCSEEEEEEEEEC-C-CEEEEEEEEECCSGGGT-----------T
T ss_pred             CeEEEEEECcCCCCHHHHHHHHHhCCCCC---CcCCeecceeEEEEEE-CCEEEEEEEEECCCchhhH-----------H
Confidence            34899999999999999999999654311   1222222222222222 333  45599999975421           1


Q ss_pred             HHhhhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhhH---------------------HHH
Q 038053          100 RIGLAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRGA---------------------TEL  149 (231)
Q Consensus       100 ~~~~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~---------------------~~l  149 (231)
                      .....+..+|++++|+|+++..+..+..         .....|++ .+.++.|...                     ..+
T Consensus        94 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~  172 (204)
T 4gzl_A           94 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII-LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM  172 (204)
T ss_dssp             TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEE-EEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred             HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE-EEEechhhccchhhhhhhhccccccccHHHHHHH
Confidence            1223457889999999998543333221         11234443 2233333100                     011


Q ss_pred             Hhhcc--chhhhhhhhHhhHHHHHHHHHH
Q 038053          150 RDQQA--EVDSLKEYSKQEISKLMGQMQE  176 (231)
Q Consensus       150 ~~~~~--~i~~is~~~~~~i~~l~~~i~~  176 (231)
                      ....+  +++.+||++|.|+++++..+.+
T Consensus       173 ~~~~~~~~~~~~SA~~g~gi~~l~~~l~~  201 (204)
T 4gzl_A          173 AKEIGAVKYLECSALTQRGLKTVFDEAIR  201 (204)
T ss_dssp             HHHTTCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHhcCCcEEEEeeCCCCCCHHHHHHHHHH
Confidence            11122  4777999999999999888765

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.31  E-value=1.8e-13  Score=109.45  Aligned_cols=83  Identities=17%  Similarity=0.117  Sum_probs=59.0

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-E---EeeCCcEEEE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-T---VLKDGQVVNV   77 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-~---~~~~~~~~~l   77 (231)
                      ++.|++..++++++|++++|  .+++|+|+||||||||+++|+|...+..    |.+........ .   ........++
T Consensus        13 ~~~y~~~~vl~~vsl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p~~----G~i~~~g~~~~~~~~~~~~~~~i~~v   86 (240)
T 1ji0_A           13 HVYYGAIHAIKGIDLKVPRG--QIVTLIGANGAGKTTTLSAIAGLVRAQK----GKIIFNGQDITNKPAHVINRMGIALV   86 (240)
T ss_dssp             EEEETTEEEEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHTTSSCCSE----EEEEETTEECTTCCHHHHHHTTEEEE
T ss_pred             EEEECCeeEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCC----ceEEECCEECCCCCHHHHHhCCEEEE
Confidence            56788888999999999999  9999999999999999999999987433    32222211100 0   0002337788


Q ss_pred             EeCCCCcCCCCCc
Q 038053           78 IDTPGLFDSSAGS   90 (231)
Q Consensus        78 ~Dtpg~~~~~~~~   90 (231)
                      ++.|.+++..++.
T Consensus        87 ~q~~~l~~~ltv~   99 (240)
T 1ji0_A           87 PEGRRIFPELTVY   99 (240)
T ss_dssp             CSSCCCCTTSBHH
T ss_pred             ecCCccCCCCcHH
Confidence            8988877654433

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.31  E-value=5.9e-13  Score=102.09  Aligned_cols=141  Identities=11%  Similarity=0.083  Sum_probs=81.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEee-CCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      .+|+++|.+|+|||||+|.|++......  ..+..+........... ....+.++||||.......           ..
T Consensus        16 ~~i~v~G~~~~GKssli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-----------~~   82 (195)
T 1x3s_A           16 LKILIIGESGVGKSSLLLRFTDDTFDPE--LAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTL-----------TP   82 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTT--CCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCS-----------HH
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCcc--CCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhh-----------hH
Confidence            6999999999999999999998764211  12222222222222221 2346788999997542211           11


Q ss_pred             hhcCCccEEEEEEECCCCCCHHHHH-----h-c----CCCCcHHHHHHHHHhh--------HHHHHhhcc-chhhhhhhh
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEEEA-----A-N----GGQPYTDEFLAELKRG--------ATELRDQQA-EVDSLKEYS  163 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~~~-----~-~----~~~~~~~~~~~~~~~~--------~~~l~~~~~-~i~~is~~~  163 (231)
                      ..+..+|++++|+|+++..+.....     . .    ...|++ .++++.|..        ...+....+ +++.+|+++
T Consensus        83 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  161 (195)
T 1x3s_A           83 SYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNM-LVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKT  161 (195)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEE-EEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTT
T ss_pred             HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEE-EEEECCcCcccccCHHHHHHHHHHcCCEEEEecCCC
Confidence            2336789999999998532222211     1 1    123332 334444311        011211122 567789999


Q ss_pred             HhhHHHHHHHHHHHH
Q 038053          164 KQEISKLMGQMQESY  178 (231)
Q Consensus       164 ~~~i~~l~~~i~~~~  178 (231)
                      +.|+++++..+.+.+
T Consensus       162 ~~gi~~l~~~l~~~~  176 (195)
T 1x3s_A          162 CDGVQCAFEELVEKI  176 (195)
T ss_dssp             CTTHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHH
Confidence            999999988877654

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.30  E-value=1.9e-12  Score=97.64  Aligned_cols=140  Identities=18%  Similarity=0.119  Sum_probs=82.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+++|.+|+|||||+|.+++......  ..+..+.......... .+  ..+.++||||...           +....
T Consensus         8 ~~i~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~-----------~~~~~   73 (177)
T 1wms_A            8 FKVILLGDGGVGKSSLMNRYVTNKFDTQ--LFHTIGVEFLNKDLEV-DGHFVTMQIWDTAGQER-----------FRSLR   73 (177)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCC------CCSEEEEEEEEEE-TTEEEEEEEEECCCCGG-----------GHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCC--CCCceeeeEEEEEEEE-CCEEEEEEEEeCCCchh-----------hhhhH
Confidence            6899999999999999999997654211  1222222222222222 33  3688999999543           12223


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH---------hc----CCCCcHHHHHHHHHhh--------HHHHHh-hc-cchhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA---------AN----GGQPYTDEFLAELKRG--------ATELRD-QQ-AEVDS  158 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~---------~~----~~~~~~~~~~~~~~~~--------~~~l~~-~~-~~i~~  158 (231)
                      ...+..+|++++|+|+++..+.....         ..    ...|++ .+.++.|..        ...+.. .. .+++.
T Consensus        74 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i-~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  152 (177)
T 1wms_A           74 TPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFV-ILGNKIDISERQVSTEEAQAWCRDNGDYPYFE  152 (177)
T ss_dssp             GGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEE-EEEECTTCSSCSSCHHHHHHHHHHTTCCCEEE
T ss_pred             HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEE-EEEECCcccccccCHHHHHHHHHhcCCceEEE
Confidence            44567889999999998532221111         11    233433 333443310        012222 11 26778


Q ss_pred             hhhhhHhhHHHHHHHHHHHH
Q 038053          159 LKEYSKQEISKLMGQMQESY  178 (231)
Q Consensus       159 is~~~~~~i~~l~~~i~~~~  178 (231)
                      +|+++|.|+++++..+....
T Consensus       153 ~Sa~~~~gi~~l~~~l~~~~  172 (177)
T 1wms_A          153 TSAKDATNVAAAFEEAVRRV  172 (177)
T ss_dssp             CCTTTCTTHHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHH
Confidence            99999999999988876643

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.30  E-value=1.8e-12  Score=96.72  Aligned_cols=139  Identities=14%  Similarity=0.120  Sum_probs=78.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEee-CCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      .+|+++|.+|||||||+|.+++.....   ...+++........... ....+.++||||......    +.   ..   
T Consensus         4 ~ki~v~G~~~~GKssli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~----~~---~~---   70 (167)
T 1c1y_A            4 YKLVVLGSGGVGKSALTVQFVQGIFVE---KYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTA----MR---DL---   70 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCCCCC---SCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTT----HH---HH---
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCC---CCCCCccceEEEEEEECCEEEEEEEEECCChHHHHH----HH---HH---
Confidence            689999999999999999999865321   11112211111112221 234678999999764321    11   11   


Q ss_pred             hhcCCccEEEEEEECCCCCCHHHHH---------h-cCCCCcHHHHHHHHHhh---------HHHHHhhc--cchhhhhh
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEEEA---------A-NGGQPYTDEFLAELKRG---------ATELRDQQ--AEVDSLKE  161 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~~~---------~-~~~~~~~~~~~~~~~~~---------~~~l~~~~--~~i~~is~  161 (231)
                       .+..+|++++|+|+++..+.....         . ....|++ .+.++.|..         ...+....  .+++.+|+
T Consensus        71 -~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  148 (167)
T 1c1y_A           71 -YMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMI-LVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSA  148 (167)
T ss_dssp             -HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEE-EEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBT
T ss_pred             -HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEE-EEEECccccccccCCHHHHHHHHHHccCCcEEEecC
Confidence             123469999999998532111111         1 1234433 333443310         01222222  26778999


Q ss_pred             hhHhhHHHHHHHHHHH
Q 038053          162 YSKQEISKLMGQMQES  177 (231)
Q Consensus       162 ~~~~~i~~l~~~i~~~  177 (231)
                      ++|.|+++++..+.+.
T Consensus       149 ~~~~gi~~l~~~l~~~  164 (167)
T 1c1y_A          149 KSKINVNEIFYDLVRQ  164 (167)
T ss_dssp             TTTBSHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHH
Confidence            9999999998887654

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.30  E-value=5.3e-12  Score=94.30  Aligned_cols=139  Identities=14%  Similarity=0.090  Sum_probs=79.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEee-CCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      .+|+++|.+|+|||||+|.+++......  ..+..+........... ....+.++||||.....    .       ...
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~----~-------~~~   70 (170)
T 1ek0_A            4 IKLVLLGEAAVGKSSIVLRFVSNDFAEN--KEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFA----S-------LAP   70 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTT--CCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG----G-------GHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEEEECCEEEEEEEEECCCChhhh----h-------hhh
Confidence            6899999999999999999998764221  12222222222222221 12367899999965311    1       112


Q ss_pred             hhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhh------------HHHHHhhcc-chhhhh
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRG------------ATELRDQQA-EVDSLK  160 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~------------~~~l~~~~~-~i~~is  160 (231)
                      ..+..+|++++|+|+++..+..+..         .....|++ .+.++.|..            ...+....+ +++.+|
T Consensus        71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~S  149 (170)
T 1ek0_A           71 XYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIA-LVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETS  149 (170)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEE-EEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECC
T ss_pred             hhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEE-EEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEe
Confidence            2346789999999998543222211         11233332 233333310            011211122 677889


Q ss_pred             hhhHhhHHHHHHHHHH
Q 038053          161 EYSKQEISKLMGQMQE  176 (231)
Q Consensus       161 ~~~~~~i~~l~~~i~~  176 (231)
                      ++++.|+++++..+.+
T Consensus       150 a~~~~gi~~l~~~l~~  165 (170)
T 1ek0_A          150 AKTGENVNDVFLGIGE  165 (170)
T ss_dssp             TTTCTTHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            9999999999887754

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.30  E-value=7.8e-13  Score=98.83  Aligned_cols=139  Identities=17%  Similarity=0.098  Sum_probs=80.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeC--CcEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+++|++|+|||||+|.|++......  ..+..+.+........ .  ...+.++||||.......           .
T Consensus         6 ~~i~v~G~~~~GKssl~~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~-----------~   71 (168)
T 1z2a_A            6 IKMVVVGNGAVGKSSMIQRYCKGIFTKD--YKKTIGVDFLERQIQV-NDEDVRLMLWDTAGQEEFDAI-----------T   71 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCCCCCC--SSCCCSSSEEEEEEEE-TTEEEEEEEECCTTGGGTTCC-----------C
T ss_pred             EEEEEECcCCCCHHHHHHHHHcCCCCCC--CCCceEEEEEEEEEEE-CCEEEEEEEEcCCCcHhHHHH-----------H
Confidence            6899999999999999999998754211  1222222222222222 2  346789999996542211           1


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH--------hcCCCCcHHHHHHHHHhh------H---HHHHhhcc-chhhhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------ANGGQPYTDEFLAELKRG------A---TELRDQQA-EVDSLKEYS  163 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~------~---~~l~~~~~-~i~~is~~~  163 (231)
                      ...+..+|++++|+|+++..+.....        .....|++ .+.++.|..      .   ..+....+ +++.+|+++
T Consensus        72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  150 (168)
T 1z2a_A           72 KAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTA-LVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKE  150 (168)
T ss_dssp             HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEE-EEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTT
T ss_pred             HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEE-EEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCC
Confidence            12235789999999998532222111        11233433 233443310      0   12222222 677899999


Q ss_pred             HhhHHHHHHHHHHH
Q 038053          164 KQEISKLMGQMQES  177 (231)
Q Consensus       164 ~~~i~~l~~~i~~~  177 (231)
                      +.|+++++..+...
T Consensus       151 ~~~i~~l~~~l~~~  164 (168)
T 1z2a_A          151 DLNVSEVFKYLAEK  164 (168)
T ss_dssp             TBSSHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHH
Confidence            99999988887664

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.30  E-value=8.9e-13  Score=100.23  Aligned_cols=140  Identities=12%  Similarity=0.087  Sum_probs=62.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+++|.+|+|||||+|.+++......  ..++++.+........ .+  ..+.++||||....           ....
T Consensus         9 ~ki~v~G~~~~GKssl~~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~-----------~~~~   74 (183)
T 2fu5_C            9 FKLLLIGDSGVGKTCVLFRFSEDAFNST--FISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERF-----------RTIT   74 (183)
T ss_dssp             EEEEEECCCCC----------------C--HHHHHCEEEEEEEEEE-TTEEEEEEEEEC--------------------C
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCC--CCCcccceeEEEEEEE-CCEEEEEEEEcCCCChhh-----------hhhH
Confidence            6899999999999999999997653111  1122222222222222 33  56889999996531           1112


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH--------h-cCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------A-NGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKEY  162 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~~  162 (231)
                      ...+..+|++++|+|+++..+.....        . ....|++ .+.++.|..         ...+....+ +++.+|++
T Consensus        75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-lv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~  153 (183)
T 2fu5_C           75 TAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKM-ILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAK  153 (183)
T ss_dssp             CTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEE-EEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC-
T ss_pred             HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEE-EEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCC
Confidence            33457889999999998533222211        1 1223333 333443310         012222222 67789999


Q ss_pred             hHhhHHHHHHHHHHHH
Q 038053          163 SKQEISKLMGQMQESY  178 (231)
Q Consensus       163 ~~~~i~~l~~~i~~~~  178 (231)
                      ++.|+++++..+....
T Consensus       154 ~~~~i~~l~~~l~~~i  169 (183)
T 2fu5_C          154 ANINVENAFFTLARDI  169 (183)
T ss_dssp             --CCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            9999999988887654

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.29  E-value=1.1e-12  Score=99.80  Aligned_cols=140  Identities=19%  Similarity=0.185  Sum_probs=79.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCc--EEEEEeCCCCcCCCCCchHHHHHHHHH
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAGSEFVGKEIVKR  100 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~Dtpg~~~~~~~~~~~~~~~~~~  100 (231)
                      ..+|+++|.+|+|||||+|.+++.....   ...+++.......... .+.  .+.++||||.......    .   .  
T Consensus        18 ~~ki~v~G~~~~GKSsl~~~l~~~~~~~---~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~----~---~--   84 (183)
T 3kkq_A           18 TYKLVVVGDGGVGKSALTIQFFQKIFVD---DYDPTIEDSYLKHTEI-DNQWAILDVLDTAGQEEFSAM----R---E--   84 (183)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCS---CCCTTCCEEEEEEEEE-TTEEEEEEEEECCSCGGGCSS----H---H--
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCC---CCCCCccceeEEEEEe-CCcEEEEEEEECCCchhhHHH----H---H--
Confidence            3799999999999999999999764321   1112222112222222 444  3456999996542211    1   1  


Q ss_pred             HhhhcCCccEEEEEEECCCCCCHHHHH----------hcCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhh
Q 038053          101 IGLAKGGIHAVLVVFSVRSRFSQEEEA----------ANGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLK  160 (231)
Q Consensus       101 ~~~~~~~~~~il~vvd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is  160 (231)
                        ..+..+|++++|+|+++..+.....          .....|++ .+.++.|..         ...+....+ +++.+|
T Consensus        85 --~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S  161 (183)
T 3kkq_A           85 --QYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMI-LVANKVDLMHLRKVTRDQGKEMATKYNIPYIETS  161 (183)
T ss_dssp             --HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEE-EEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEB
T ss_pred             --HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE-EEEECCCchhccCcCHHHHHHHHHHhCCeEEEec
Confidence              1223579999999998532211111          11233333 333443310         012222222 677889


Q ss_pred             hh-hHhhHHHHHHHHHHHH
Q 038053          161 EY-SKQEISKLMGQMQESY  178 (231)
Q Consensus       161 ~~-~~~~i~~l~~~i~~~~  178 (231)
                      ++ ++.|+++++..+.+.+
T Consensus       162 a~~~~~~v~~l~~~l~~~i  180 (183)
T 3kkq_A          162 AKDPPLNVDKTFHDLVRVI  180 (183)
T ss_dssp             CSSSCBSHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHH
Confidence            99 9999999998887754

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.29  E-value=1.4e-12  Score=98.57  Aligned_cols=141  Identities=13%  Similarity=0.126  Sum_probs=82.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC---cEEEEEeCCCCcCCCCCchHHHHHHHH
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG---QVVNVIDTPGLFDSSAGSEFVGKEIVK   99 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~---~~~~l~Dtpg~~~~~~~~~~~~~~~~~   99 (231)
                      ..+|+++|.+|||||||+|.+++......  ..+....+........ .+   ..+.++||||.......          
T Consensus         6 ~~ki~v~G~~~~GKssl~~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~~~~Dt~G~~~~~~~----------   72 (178)
T 2hxs_A            6 QLKIVVLGDGASGKTSLTTCFAQETFGKQ--YKQTIGLDFFLRRITL-PGNLNVTLQIWDIGGQTIGGKM----------   72 (178)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHGGGTTHH--HHHTTTSSEEEEEEEE-TTTEEEEEEEEECTTCCTTCTT----------
T ss_pred             eEEEEEECcCCCCHHHHHHHHHhCcCCCC--CCCceeEEEEEEEEEe-CCCCEEEEEEEECCCCccccch----------
Confidence            37899999999999999999998753211  1111112222222333 33   57889999997543211          


Q ss_pred             HHhhhcCCccEEEEEEECCCCCCHHHHH------h-----cCCCCcHHHHHHHHHhhH---------HHHHhhcc-chhh
Q 038053          100 RIGLAKGGIHAVLVVFSVRSRFSQEEEA------A-----NGGQPYTDEFLAELKRGA---------TELRDQQA-EVDS  158 (231)
Q Consensus       100 ~~~~~~~~~~~il~vvd~~~~~~~~~~~------~-----~~~~~~~~~~~~~~~~~~---------~~l~~~~~-~i~~  158 (231)
                       ....+..+|++++|+|+++..+..+..      .     ....|.++.+.++.|...         ..+....+ +++.
T Consensus        73 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  151 (178)
T 2hxs_A           73 -LDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHF  151 (178)
T ss_dssp             -HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEE
T ss_pred             -hhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEE
Confidence             112246789999999998533322211      0     113442223344443210         12222222 6778


Q ss_pred             hhhhhHhhHHHHHHHHHHH
Q 038053          159 LKEYSKQEISKLMGQMQES  177 (231)
Q Consensus       159 is~~~~~~i~~l~~~i~~~  177 (231)
                      +|+++|.|+++++..+...
T Consensus       152 ~Sa~~~~gi~~l~~~l~~~  170 (178)
T 2hxs_A          152 VSAKTGDSVFLCFQKVAAE  170 (178)
T ss_dssp             ECTTTCTTHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHH
Confidence            9999999999998887664

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.29  E-value=1.3e-12  Score=100.14  Aligned_cols=141  Identities=11%  Similarity=0.142  Sum_probs=79.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHH
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKR  100 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~  100 (231)
                      ..+|+++|.+|||||||+|.|++......  ..+..+.+........ .+  ..+.++||||...       ...   ..
T Consensus        20 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~-------~~~---~~   86 (189)
T 1z06_A           20 IFKIIVIGDSNVGKTCLTYRFCAGRFPDR--TEATIGVDFRERAVDI-DGERIKIQLWDTAGQER-------FRK---SM   86 (189)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSS--CCCCCSCCEEEEEEEE-TTEEEEEEEEECCCSHH-------HHT---TT
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCC--CCCCcceEEEEEEEEE-CCEEEEEEEEECCCchh-------hhh---hh
Confidence            37999999999999999999997654221  1222222222222222 33  4688999999542       110   11


Q ss_pred             HhhhcCCccEEEEEEECCCCCCHHHHH--------h--cCCCCcHHHHHHHHHhhH---------HHHHhhcc-chhhhh
Q 038053          101 IGLAKGGIHAVLVVFSVRSRFSQEEEA--------A--NGGQPYTDEFLAELKRGA---------TELRDQQA-EVDSLK  160 (231)
Q Consensus       101 ~~~~~~~~~~il~vvd~~~~~~~~~~~--------~--~~~~~~~~~~~~~~~~~~---------~~l~~~~~-~i~~is  160 (231)
                      ....+..+|++++|+|+++..+.....        .  ....|++ .+.++.|...         ..+....+ +++.+|
T Consensus        87 ~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S  165 (189)
T 1z06_A           87 VQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRI-LVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETS  165 (189)
T ss_dssp             HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEE-EEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECC
T ss_pred             hHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECccccccceeCHHHHHHHHHHcCCEEEEEe
Confidence            222346789999999998432211111        1  2233433 3334433110         12222222 677789


Q ss_pred             hhhH---hhHHHHHHHHHHH
Q 038053          161 EYSK---QEISKLMGQMQES  177 (231)
Q Consensus       161 ~~~~---~~i~~l~~~i~~~  177 (231)
                      ++++   .++.+++..+...
T Consensus       166 a~~~~~~~~i~~l~~~l~~~  185 (189)
T 1z06_A          166 AKNPNDNDHVEAIFMTLAHK  185 (189)
T ss_dssp             SSSGGGGSCHHHHHHHHC--
T ss_pred             CCcCCcccCHHHHHHHHHHH
Confidence            9999   8998888877554

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.28  E-value=1.8e-12  Score=97.04  Aligned_cols=141  Identities=17%  Similarity=0.107  Sum_probs=75.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+++|.+|+|||||+|.+++......  .....+.+........ .+  ..+.++||||......       .+..  
T Consensus         3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~-------~~~~--   70 (169)
T 3q85_A            3 FKVMLVGESGVGKSTLAGTFGGLQGDHA--HEMENSEDTYERRIMV-DKEEVTLIVYDIWEQGDAGG-------WLQD--   70 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCC--------------CEEEEEEEE-TTEEEEEEEECCCCC---------------C--
T ss_pred             EEEEEECCCCCCHHHHHHHHHhccCccc--ccCCCcCCeeeEEEEE-CCeEEEEEEEECCCccccch-------hhhh--
Confidence            6899999999999999999997654222  1222222222222222 33  4567899999764211       0111  


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH--------hc--CCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------AN--GGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKE  161 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~~--~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~  161 (231)
                       ..+..+|++++|+|+++.-+.....        ..  ...|++ .+.++.|..         ...+....+ +++.+|+
T Consensus        71 -~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  148 (169)
T 3q85_A           71 -HCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVI-LVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSA  148 (169)
T ss_dssp             -HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEE-EEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBT
T ss_pred             -hhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEE-EEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecC
Confidence             1123479999999998532211111        11  134443 333443311         012222222 6778999


Q ss_pred             hhHhhHHHHHHHHHHHH
Q 038053          162 YSKQEISKLMGQMQESY  178 (231)
Q Consensus       162 ~~~~~i~~l~~~i~~~~  178 (231)
                      +++.|+++++..+....
T Consensus       149 ~~~~~v~~l~~~l~~~i  165 (169)
T 3q85_A          149 ALHHNTRELFEGAVRQI  165 (169)
T ss_dssp             TTTBSHHHHHHHHHHHH
T ss_pred             ccCCCHHHHHHHHHHHH
Confidence            99999999988887643

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.28  E-value=5.8e-13  Score=106.16  Aligned_cols=86  Identities=15%  Similarity=0.024  Sum_probs=59.7

Q ss_pred             CCCCCC----cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-EE------ee
Q 038053            2 SSGMGE----RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-TV------LK   70 (231)
Q Consensus         2 ~~~~~~----~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-~~------~~   70 (231)
                      ++.|++    ..++++++|++++|  ..++|+|+||||||||+++|+|...+..    |.+........ ..      ..
T Consensus         8 ~~~y~~~~~~~~~L~~isl~i~~G--e~~~iiG~nGsGKSTLl~~l~Gl~~p~~----G~I~~~g~~~~~~~~~~~~~~~   81 (235)
T 3tif_A            8 TKTYKMGEEIIYALKNVNLNIKEG--EFVSIMGPSGSGKSTMLNIIGCLDKPTE----GEVYIDNIKTNDLDDDELTKIR   81 (235)
T ss_dssp             EEEEEETTEEEEEEEEEEEEECTT--CEEEEECSTTSSHHHHHHHHTTSSCCSE----EEEEETTEECTTCCHHHHHHHH
T ss_pred             EEEeCCCCcceeeEEeeeEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCCCc----eEEEECCEEcccCCHHHHHHHh
Confidence            455653    46899999999999  9999999999999999999999987433    33322211100 00      00


Q ss_pred             CCcEEEEEeCCCCcCCCCCchHH
Q 038053           71 DGQVVNVIDTPGLFDSSAGSEFV   93 (231)
Q Consensus        71 ~~~~~~l~Dtpg~~~~~~~~~~~   93 (231)
                      .....++++.|.+++..++.+++
T Consensus        82 ~~~i~~v~Q~~~l~~~~tv~enl  104 (235)
T 3tif_A           82 RDKIGFVFQQFNLIPLLTALENV  104 (235)
T ss_dssp             HHHEEEECTTCCCCTTSCHHHHH
T ss_pred             hccEEEEecCCccCCCCcHHHHH
Confidence            12478899999988866655443

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.28  E-value=2.4e-12  Score=97.15  Aligned_cols=139  Identities=12%  Similarity=0.060  Sum_probs=80.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+++|.+|+|||||+|.+++......  ..+..+.+........ .+  ..+.++||||......    .       .
T Consensus        15 ~~i~v~G~~~~GKssli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~----~-------~   80 (179)
T 2y8e_A           15 FKLVFLGEQSVGKTSLITRFMYDSFDNT--YQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRS----L-------I   80 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCSS--CCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGGG----G-------S
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCC--CCCceeeEEEEEEEEE-CCeEEEEEEEECCCcHHHHH----H-------H
Confidence            6899999999999999999997654211  2233333333333333 33  3678999999653211    0       1


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhh------HH---HHHhhc-cchhhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRG------AT---ELRDQQ-AEVDSLKEY  162 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~------~~---~l~~~~-~~i~~is~~  162 (231)
                      ...+..+|++++|+|+++..+.....         .....|++ .+.++.|..      ..   .+.... -+++.+|++
T Consensus        81 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  159 (179)
T 2y8e_A           81 PSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIM-LVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK  159 (179)
T ss_dssp             HHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEE-EEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTT
T ss_pred             HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEE-EEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCC
Confidence            12234679999999998432211111         11223332 233343311      01   111111 267778999


Q ss_pred             hHhhHHHHHHHHHHH
Q 038053          163 SKQEISKLMGQMQES  177 (231)
Q Consensus       163 ~~~~i~~l~~~i~~~  177 (231)
                      ++.|+++++..+.+.
T Consensus       160 ~~~~i~~l~~~l~~~  174 (179)
T 2y8e_A          160 AGYNVKQLFRRVAAA  174 (179)
T ss_dssp             TTBSHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHH
Confidence            999999998887654

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.28  E-value=1.5e-13  Score=111.07  Aligned_cols=82  Identities=20%  Similarity=0.125  Sum_probs=57.7

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-E---EeeCCcEEEE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-T---VLKDGQVVNV   77 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-~---~~~~~~~~~l   77 (231)
                      ++.|++..++++++|++++|  .+++|+|+||||||||+++|+|...+..    |.+........ .   ........++
T Consensus        14 ~~~y~~~~vl~~vsl~i~~G--e~~~liG~nGsGKSTLlk~l~Gl~~p~~----G~i~~~g~~~~~~~~~~~~~~~i~~v   87 (257)
T 1g6h_A           14 VKYFGEFKALDGVSISVNKG--DVTLIIGPNGSGKSTLINVITGFLKADE----GRVYFENKDITNKEPAELYHYGIVRT   87 (257)
T ss_dssp             EEEETTEEEEEEECCEEETT--CEEEEECSTTSSHHHHHHHHTTSSCCSE----EEEEETTEECTTCCHHHHHHHTEEEC
T ss_pred             EEEECCEeeEeeeEEEEeCC--CEEEEECCCCCCHHHHHHHHhCCCCCCC----cEEEECCEECCCCCHHHHHhCCEEEE
Confidence            56788888999999999999  9999999999999999999999987433    32222111100 0   0001236778


Q ss_pred             EeCCCCcCCCCC
Q 038053           78 IDTPGLFDSSAG   89 (231)
Q Consensus        78 ~Dtpg~~~~~~~   89 (231)
                      ++.|.+++..++
T Consensus        88 ~q~~~l~~~~tv   99 (257)
T 1g6h_A           88 FQTPQPLKEMTV   99 (257)
T ss_dssp             CCCCGGGGGSBH
T ss_pred             ccCCccCCCCcH
Confidence            888877654443

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.28  E-value=7e-13  Score=112.26  Aligned_cols=87  Identities=17%  Similarity=0.180  Sum_probs=64.8

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-------EEeeCCc
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-------TVLKDGQ   73 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-------~~~~~~~   73 (231)
                      +++.|++..++++++|++++|  ..++|+|+||||||||+++|+|...+..    |.+........       .......
T Consensus         9 l~~~y~~~~vl~~vsl~i~~G--e~~~llGpnGsGKSTLLr~iaGl~~p~~----G~I~i~g~~~~~~~~~~~~~~~~r~   82 (372)
T 1g29_1            9 VWKVFGEVTAVREMSLEVKDG--EFMILLGPSGCGKTTTLRMIAGLEEPSR----GQIYIGDKLVADPEKGIFVPPKDRD   82 (372)
T ss_dssp             EEEEETTEEEEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHHTSSCCSE----EEEEETTEEEEEGGGTEECCGGGSS
T ss_pred             EEEEECCEEEEeeeEEEEcCC--CEEEEECCCCcHHHHHHHHHHcCCCCCc----cEEEECCEECccccccccCCHhHCC
Confidence            357788888999999999999  9999999999999999999999987433    33332221110       0111345


Q ss_pred             EEEEEeCCCCcCCCCCchHH
Q 038053           74 VVNVIDTPGLFDSSAGSEFV   93 (231)
Q Consensus        74 ~~~l~Dtpg~~~~~~~~~~~   93 (231)
                      ..++++.+.+++..++.+++
T Consensus        83 ig~v~Q~~~l~~~ltv~eni  102 (372)
T 1g29_1           83 IAMVFQSYALYPHMTVYDNI  102 (372)
T ss_dssp             EEEECSCCCCCTTSCHHHHH
T ss_pred             EEEEeCCCccCCCCCHHHHH
Confidence            78899999999877766654

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.28  E-value=1.2e-12  Score=102.57  Aligned_cols=144  Identities=17%  Similarity=0.190  Sum_probs=83.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHH
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKR  100 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~  100 (231)
                      ..+|+|+|.+|||||||+|.|++...........+.+..  ........+  ..+.++||||.........         
T Consensus        11 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~---------   79 (218)
T 4djt_A           11 TYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNH--PVTFLDDQGNVIKFNVWDTAGQEKKAVLKD---------   79 (218)
T ss_dssp             EEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEE--EEEEEBTTSCEEEEEEEEECSGGGTSCCCH---------
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeE--EEEEEeCCCcEEEEEEEecCCchhhchHHH---------
Confidence            379999999999999999999976532111111121211  111111112  4688999999764322111         


Q ss_pred             HhhhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhhH------HHHHhh---cc-chhhhhh
Q 038053          101 IGLAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRGA------TELRDQ---QA-EVDSLKE  161 (231)
Q Consensus       101 ~~~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~------~~l~~~---~~-~i~~is~  161 (231)
                        ..+..+|++++|+|++++.+..+..         .....|++ .+.++.|...      ..+...   .. +++.+||
T Consensus        80 --~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  156 (218)
T 4djt_A           80 --VYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIV-VCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISA  156 (218)
T ss_dssp             --HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEE-EEEECTTCC----CCHHHHHHHTTTCCCEEEEEBT
T ss_pred             --HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEE-EEEECCCCccccccCHHHHHHHHHHcCCcEEEEec
Confidence              1235689999999998544333321         11223433 3334433110      111111   12 6788999


Q ss_pred             hhHhhHHHHHHHHHHHHHH
Q 038053          162 YSKQEISKLMGQMQESYED  180 (231)
Q Consensus       162 ~~~~~i~~l~~~i~~~~~~  180 (231)
                      ++|.|+++++..+...+.+
T Consensus       157 ~~g~gv~~l~~~l~~~~~~  175 (218)
T 4djt_A          157 KTAHNFGLPFLHLARIFTG  175 (218)
T ss_dssp             TTTBTTTHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHHhc
Confidence            9999999999988876543

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.27  E-value=5.8e-13  Score=112.24  Aligned_cols=88  Identities=17%  Similarity=0.104  Sum_probs=64.7

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEEeeCCcEEEEEe
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTVLKDGQVVNVID   79 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~D   79 (231)
                      +++.|++..++++++|++++|  ..++|+|+||||||||+++|+|...+..|    .+....... ..........++++
T Consensus         9 l~~~y~~~~vl~~vsl~i~~G--e~~~llGpnGsGKSTLLr~iaGl~~p~~G----~I~i~g~~i~~~~~~~r~ig~v~Q   82 (362)
T 2it1_A            9 IVKKFGNFTALNNINLKIKDG--EFMALLGPSGSGKSTLLYTIAGIYKPTSG----KIYFDEKDVTELPPKDRNVGLVFQ   82 (362)
T ss_dssp             EEEESSSSEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHHTSSCCSEE----EEEETTEECTTSCGGGTTEEEECT
T ss_pred             EEEEECCEEEEEeeEEEECCC--CEEEEECCCCchHHHHHHHHhcCCCCCce----EEEECCEECCcCCHhHCcEEEEec
Confidence            357888888999999999999  99999999999999999999999874333    222211110 00001345788999


Q ss_pred             CCCCcCCCCCchHHH
Q 038053           80 TPGLFDSSAGSEFVG   94 (231)
Q Consensus        80 tpg~~~~~~~~~~~~   94 (231)
                      .+.+++..++.+++.
T Consensus        83 ~~~l~~~ltv~eni~   97 (362)
T 2it1_A           83 NWALYPHMTVYKNIA   97 (362)
T ss_dssp             TCCCCTTSCHHHHHH
T ss_pred             CcccCCCCCHHHHHH
Confidence            999998777666553

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.27  E-value=4.8e-13  Score=112.66  Aligned_cols=87  Identities=17%  Similarity=0.074  Sum_probs=63.4

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEEeeCCcEEEEEe
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTVLKDGQVVNVID   79 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~D   79 (231)
                      +++.|++..++++++|++++|  ..++|+|+||||||||+++|+|...+..|    .+....... ..........+++|
T Consensus         9 l~~~y~~~~vl~~vsl~i~~G--e~~~llGpnGsGKSTLLr~iaGl~~p~~G----~I~i~g~~i~~~~~~~r~ig~v~Q   82 (359)
T 2yyz_A            9 LKKYFGKVKAVDGVSFEVKDG--EFVALLGPSGCGKTTTLLMLAGIYKPTSG----EIYFDDVLVNDIPPKYREVGMVFQ   82 (359)
T ss_dssp             EEEEETTEEEEEEEEEEECTT--CEEEEECSTTSSHHHHHHHHHTSSCCSEE----EEEETTEECTTSCGGGTTEEEECS
T ss_pred             EEEEECCEEEEeeeEEEEcCC--CEEEEEcCCCchHHHHHHHHHCCCCCCcc----EEEECCEECCCCChhhCcEEEEec
Confidence            357788888999999999999  99999999999999999999999874333    222211110 00001345788999


Q ss_pred             CCCCcCCCCCchHH
Q 038053           80 TPGLFDSSAGSEFV   93 (231)
Q Consensus        80 tpg~~~~~~~~~~~   93 (231)
                      .+.++++.++.+++
T Consensus        83 ~~~l~~~ltv~eni   96 (359)
T 2yyz_A           83 NYALYPHMTVFENI   96 (359)
T ss_dssp             SCCCCTTSCHHHHH
T ss_pred             CcccCCCCCHHHHH
Confidence            99998876655544

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.27  E-value=7.2e-12  Score=105.45  Aligned_cols=95  Identities=13%  Similarity=0.063  Sum_probs=50.8

Q ss_pred             CCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHHh-cCCCCcHHHHHHHHHhh----
Q 038053           71 DGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEAA-NGGQPYTDEFLAELKRG----  145 (231)
Q Consensus        71 ~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----  145 (231)
                      .+..++++||||+.+.    .   .       .....+|.+++|+|++.+........ ....+.+ .++|+++..    
T Consensus       165 ~~~~~iliDT~Gi~~~----~---~-------~l~~~~d~vl~V~d~~~~~~~~~i~~~il~~~~i-vVlNK~Dl~~~~~  229 (349)
T 2www_A          165 AGYDIILIETVGVGQS----E---F-------AVADMVDMFVLLLPPAGGDELQGIKRGIIEMADL-VAVTKSDGDLIVP  229 (349)
T ss_dssp             TTCSEEEEECCCC--C----H---H-------HHHTTCSEEEEEECCC------------CCSCSE-EEECCCSGGGHHH
T ss_pred             CCCCEEEEECCCcchh----h---h-------hHHhhCCEEEEEEcCCcchhHHHhHHHHHhcCCE-EEEeeecCCCchh
Confidence            4567889999998742    1   0       11357899999999874322221110 0111221 222333211    


Q ss_pred             ----HHHHHhh-----------ccchhhhhhhhHhhHHHHHHHHHHHHHH
Q 038053          146 ----ATELRDQ-----------QAEVDSLKEYSKQEISKLMGQMQESYED  180 (231)
Q Consensus       146 ----~~~l~~~-----------~~~i~~is~~~~~~i~~l~~~i~~~~~~  180 (231)
                          ...+...           .++++++|+.+|.|++.++..+.+....
T Consensus       230 ~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~  279 (349)
T 2www_A          230 ARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL  279 (349)
T ss_dssp             HHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence                0122110           2357789999999999999999886643

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.27  E-value=2.5e-11  Score=91.92  Aligned_cols=140  Identities=16%  Similarity=0.084  Sum_probs=80.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHH
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKR  100 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~  100 (231)
                      ..+|+++|.+|+|||||+|.+++....   ....+++.......... .+  ..+.++||||.......           
T Consensus         6 ~~ki~~~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~-----------   70 (181)
T 3t5g_A            6 SRKIAILGYRSVGKSSLTIQFVEGQFV---DSYDPTIENTFTKLITV-NGQEYHLQLVDTAGQDEYSIF-----------   70 (181)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCC---SCCCTTCCEEEEEEEEE-TTEEEEEEEEECCCCCTTCCC-----------
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcCCCC---CCCCCCccccEEEEEEE-CCEEEEEEEEeCCCchhhhHH-----------
Confidence            379999999999999999999955431   11222222211222222 44  45679999997653211           


Q ss_pred             HhhhcCCccEEEEEEECCCCCCHHHHH----------hcCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhh
Q 038053          101 IGLAKGGIHAVLVVFSVRSRFSQEEEA----------ANGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLK  160 (231)
Q Consensus       101 ~~~~~~~~~~il~vvd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is  160 (231)
                      ....+..+|++++|+|+++.-+.....          .....|++ .+.++.|..         ...+....+ +++.+|
T Consensus        71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  149 (181)
T 3t5g_A           71 PQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIM-LVGNKKDLHMERVISYEEGKALAESWNAAFLESS  149 (181)
T ss_dssp             CGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEE-EEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECC
T ss_pred             HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECccchhcceecHHHHHHHHHHhCCcEEEEe
Confidence            112346789999999998432222211          11123333 333443310         012222222 677899


Q ss_pred             hhhHhhHHHHHHHHHHHH
Q 038053          161 EYSKQEISKLMGQMQESY  178 (231)
Q Consensus       161 ~~~~~~i~~l~~~i~~~~  178 (231)
                      ++++.|+.+++..+....
T Consensus       150 a~~~~~v~~l~~~l~~~~  167 (181)
T 3t5g_A          150 AKENQTAVDVFRRIILEA  167 (181)
T ss_dssp             TTSHHHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHH
Confidence            999999999988887754

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.27  E-value=1.8e-13  Score=110.95  Aligned_cols=83  Identities=13%  Similarity=0.023  Sum_probs=58.8

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE---EeeCCcEEEEE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT---VLKDGQVVNVI   78 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~l~   78 (231)
                      ++.|++..++++++|++++|  .+++|+|+||||||||+++|+|...+    ..|.+.........   ........+++
T Consensus        18 ~~~~~~~~vL~~vsl~i~~G--e~~~liG~nGsGKSTLl~~l~Gl~~p----~~G~I~~~g~~~~~~~~~~~~~~i~~v~   91 (266)
T 4g1u_C           18 HYHVQQQALINDVSLHIASG--EMVAIIGPNGAGKSTLLRLLTGYLSP----SHGECHLLGQNLNSWQPKALARTRAVMR   91 (266)
T ss_dssp             EEEETTEEEEEEEEEEEETT--CEEEEECCTTSCHHHHHHHHTSSSCC----SSCEEEETTEETTTSCHHHHHHHEEEEC
T ss_pred             EEEeCCeeEEEeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCC----CCcEEEECCEECCcCCHHHHhheEEEEe
Confidence            56788999999999999999  99999999999999999999999873    34433322211000   00012357788


Q ss_pred             eCCCCcCCCCCc
Q 038053           79 DTPGLFDSSAGS   90 (231)
Q Consensus        79 Dtpg~~~~~~~~   90 (231)
                      +.+.++...++.
T Consensus        92 q~~~~~~~~tv~  103 (266)
T 4g1u_C           92 QYSELAFPFSVS  103 (266)
T ss_dssp             SCCCCCSCCBHH
T ss_pred             cCCccCCCCCHH
Confidence            888776544433

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.27  E-value=1.4e-12  Score=100.03  Aligned_cols=144  Identities=10%  Similarity=0.014  Sum_probs=82.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCC------CCcceeeeeeeE---Ee-eCCcEEEEEeCCCCcCCCCCchHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADS------SGVTKTCEMKTT---VL-KDGQVVNVIDTPGLFDSSAGSEFV   93 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~------~~~t~~~~~~~~---~~-~~~~~~~l~Dtpg~~~~~~~~~~~   93 (231)
                      .+|+++|.+|||||||+|.|.|.......+..      ...|........   .. .....+.++||||.....      
T Consensus        15 ~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~------   88 (198)
T 3t1o_A           15 FKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN------   88 (198)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS------
T ss_pred             cEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH------
Confidence            78999999999999999999987653221100      111221111110   11 023467899999975422      


Q ss_pred             HHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH-----------h---cCCCCcHHHHHHHHHhhH----HHHHhhc--
Q 038053           94 GKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA-----------A---NGGQPYTDEFLAELKRGA----TELRDQQ--  153 (231)
Q Consensus        94 ~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~-----------~---~~~~~~~~~~~~~~~~~~----~~l~~~~--  153 (231)
                           ......+..+|++++|+|++++....+..           .   ....|++ .+.++.|...    +++.+..  
T Consensus        89 -----~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~pii-lv~NK~Dl~~~~~~~~~~~~~~~  162 (198)
T 3t1o_A           89 -----ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIV-IQVNKRDLPDALPVEMVRAVVDP  162 (198)
T ss_dssp             -----HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEE-EEEECTTSTTCCCHHHHHHHHCT
T ss_pred             -----HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEE-EEEEchhcccccCHHHHHHHHHh
Confidence                 11122457889999999998432222221           0   0233333 3444444110    2222222  


Q ss_pred             --c-chhhhhhhhHhhHHHHHHHHHHHHH
Q 038053          154 --A-EVDSLKEYSKQEISKLMGQMQESYE  179 (231)
Q Consensus       154 --~-~i~~is~~~~~~i~~l~~~i~~~~~  179 (231)
                        . +++.+||++|.|+++++..+.....
T Consensus       163 ~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~  191 (198)
T 3t1o_A          163 EGKFPVLEAVATEGKGVFETLKEVSRLVL  191 (198)
T ss_dssp             TCCSCEEECBGGGTBTHHHHHHHHHHHHH
T ss_pred             cCCceEEEEecCCCcCHHHHHHHHHHHHH
Confidence              2 6677999999999999888876543

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.27  E-value=5.1e-12  Score=97.96  Aligned_cols=140  Identities=12%  Similarity=0.061  Sum_probs=79.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+|+|.+|+|||||+|.+++......  ..+..+.+........ .+  ..+.++||||....           ....
T Consensus        30 ~ki~vvG~~~vGKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~~~   95 (201)
T 2hup_A           30 FKLVLVGDASVGKTCVVQRFKTGAFSER--QGSTIGVDFTMKTLEI-QGKRVKLQIWDTAGQERF-----------RTIT   95 (201)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSCC------------CEEEEEEEE-TTEEEEEEEECCTTCGGG-----------HHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHhhCCCCCC--CCCCcceEEEEEEEEE-CCEEEEEEEEECCCcHhH-----------HHHH
Confidence            6899999999999999999987754211  1111112222222222 33  47889999996531           1112


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH--------h-cCCCCcHHHHHHHHHhh---------HHHHHhhcc--chhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------A-NGGQPYTDEFLAELKRG---------ATELRDQQA--EVDSLKE  161 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~---------~~~l~~~~~--~i~~is~  161 (231)
                      ...+..+|++++|+|+++..+.....        . ....|++ .+.++.|..         ...+....+  +++.+|+
T Consensus        96 ~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~pii-lv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA  174 (201)
T 2hup_A           96 QSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQL-LIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSA  174 (201)
T ss_dssp             HHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEE-EEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBT
T ss_pred             HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEE-EEEECCccccccccCHHHHHHHHHHcCCCEEEEEeC
Confidence            23346789999999998432221111        1 1223332 233333311         012222222  5678999


Q ss_pred             hhHhhHHHHHHHHHHHH
Q 038053          162 YSKQEISKLMGQMQESY  178 (231)
Q Consensus       162 ~~~~~i~~l~~~i~~~~  178 (231)
                      +++.|+++++..+....
T Consensus       175 ~~g~gi~~l~~~l~~~i  191 (201)
T 2hup_A          175 KDSSNVEEAFLRVATEL  191 (201)
T ss_dssp             TTTBSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            99999999998877654

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.27  E-value=5.6e-13  Score=112.00  Aligned_cols=87  Identities=18%  Similarity=0.067  Sum_probs=64.1

Q ss_pred             CCCCC-CCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEEeeCCcEEEEE
Q 038053            1 MSSGM-GERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTVLKDGQVVNVI   78 (231)
Q Consensus         1 ~~~~~-~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~   78 (231)
                      +++.| ++..++++++|++++|  ..++|+|+||||||||+++|+|...+..|    .+....... ..........+++
T Consensus        20 l~~~y~g~~~vl~~vsl~i~~G--e~~~llGpnGsGKSTLLr~iaGl~~p~~G----~I~i~g~~i~~~~~~~r~ig~v~   93 (355)
T 1z47_A           20 VEKIYPGGARSVRGVSFQIREG--EMVGLLGPSGSGKTTILRLIAGLERPTKG----DVWIGGKRVTDLPPQKRNVGLVF   93 (355)
T ss_dssp             EEECCTTSTTCEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHHTSSCCSEE----EEEETTEECTTCCGGGSSEEEEC
T ss_pred             EEEEEcCCCEEEeeeEEEECCC--CEEEEECCCCCcHHHHHHHHhCCCCCCcc----EEEECCEECCcCChhhCcEEEEe
Confidence            36788 8888999999999999  99999999999999999999999874333    222211110 0001134578899


Q ss_pred             eCCCCcCCCCCchHH
Q 038053           79 DTPGLFDSSAGSEFV   93 (231)
Q Consensus        79 Dtpg~~~~~~~~~~~   93 (231)
                      +.+.+++..++.+++
T Consensus        94 Q~~~l~~~ltv~eni  108 (355)
T 1z47_A           94 QNYALFQHMTVYDNV  108 (355)
T ss_dssp             GGGCCCTTSCHHHHH
T ss_pred             cCcccCCCCCHHHHH
Confidence            999998877766655

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.27  E-value=8e-11  Score=103.14  Aligned_cols=141  Identities=11%  Similarity=0.187  Sum_probs=85.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccc-----cccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFK-----ASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIV   98 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~-----~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~   98 (231)
                      .+|+++|.+|+|||||+|.|++.....     ......++|.+........ .+..+.++||||..           .+.
T Consensus        20 ~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~iiDtPGh~-----------~~~   87 (482)
T 1wb1_A           20 INLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL-ENYRITLVDAPGHA-----------DLI   87 (482)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE-TTEEEEECCCSSHH-----------HHH
T ss_pred             CEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEE-CCEEEEEEECCChH-----------HHH
Confidence            799999999999999999999976110     0012345666555544544 67889999999953           233


Q ss_pred             HHHhhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhh--------HHHHHhh------c--cchh
Q 038053           99 KRIGLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRG--------ATELRDQ------Q--AEVD  157 (231)
Q Consensus        99 ~~~~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~--------~~~l~~~------~--~~i~  157 (231)
                      ......+..+|++++|+|+++++..+...     .....|. +.++|++|..        .+++.+.      +  .+++
T Consensus        88 ~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~-IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii  166 (482)
T 1wb1_A           88 RAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPI-IVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSII  166 (482)
T ss_dssp             HHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCB-CEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEE
T ss_pred             HHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCE-EEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEE
Confidence            33444557899999999998776665543     2223333 2333333310        0122221      1  2678


Q ss_pred             hhhhhhHhhHHHHHHHHHHH
Q 038053          158 SLKEYSKQEISKLMGQMQES  177 (231)
Q Consensus       158 ~is~~~~~~i~~l~~~i~~~  177 (231)
                      ++||++|.|+.+|++.+...
T Consensus       167 ~vSA~~g~gI~~L~~~L~~~  186 (482)
T 1wb1_A          167 PISAKTGFGVDELKNLIITT  186 (482)
T ss_dssp             ECCTTTCTTHHHHHHHHHHH
T ss_pred             EEECcCCCCHHHHHHHHHHh
Confidence            89999999999988877664

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.27  E-value=8e-11  Score=99.23  Aligned_cols=152  Identities=13%  Similarity=0.111  Sum_probs=80.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccc----CCCC----------------------ccee----------------
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASA----DSSG----------------------VTKT----------------   61 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~----~~~~----------------------~t~~----------------   61 (231)
                      ..|+++|.+|||||||+|+|+|......+.    ..++                      +|..                
T Consensus        32 ~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g~  111 (353)
T 2x2e_A           32 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGT  111 (353)
T ss_dssp             CEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHTT
T ss_pred             CeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhccc
Confidence            589999999999999999999986421110    0111                      1100                


Q ss_pred             -------eeeeeEEeeCCcEEEEEeCCCCcCCCCC--chHHHHHHHHHHhhhc-CCccEEEEEEECCCCCCHHHHH----
Q 038053           62 -------CEMKTTVLKDGQVVNVIDTPGLFDSSAG--SEFVGKEIVKRIGLAK-GGIHAVLVVFSVRSRFSQEEEA----  127 (231)
Q Consensus        62 -------~~~~~~~~~~~~~~~l~Dtpg~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~il~vvd~~~~~~~~~~~----  127 (231)
                             .............+.++||||+......  .......+...+...+ ...++++++++++..+...+..    
T Consensus       112 ~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~  191 (353)
T 2x2e_A          112 NKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAK  191 (353)
T ss_dssp             TTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHH
T ss_pred             CCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHH
Confidence                   0000001112457889999999753211  1222222222222222 3456777788877555544321    


Q ss_pred             -h-cCCCCcHHHHHHHHHhhH------HHHHhh-------ccchhhhhhhhHhhHHHHHHHHHH
Q 038053          128 -A-NGGQPYTDEFLAELKRGA------TELRDQ-------QAEVDSLKEYSKQEISKLMGQMQE  176 (231)
Q Consensus       128 -~-~~~~~~~~~~~~~~~~~~------~~l~~~-------~~~i~~is~~~~~~i~~l~~~i~~  176 (231)
                       . ....+.+ .++|+.|...      ..+...       ..+++.+|+.++.|+..++..+..
T Consensus       192 ~~~~~~~~~i-~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          192 EVDPQGQRTI-GVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             HHCTTCTTEE-EEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             HhCcCCCceE-EEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence             1 1223332 3444444210      111111       125677899999998888887765

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.26  E-value=1.8e-11  Score=93.27  Aligned_cols=147  Identities=18%  Similarity=0.167  Sum_probs=83.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHH----HHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKE----IVK   99 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~----~~~   99 (231)
                      .+|+++|.+|||||||+|.+++.... . ...+++|......  .. .  .+.++||||+.............    ...
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~-~-~~~~~~t~~~~~~--~~-~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   74 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVR-R-GKRPGVTRKIIEI--EW-K--NHKIIDMPGFGFMMGLPKEVQERIKDEIVH   74 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCS-S-SSSTTCTTSCEEE--EE-T--TEEEEECCCBSCCTTSCHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCc-c-CCCCCccceeEEE--ec-C--CEEEEECCCccccccCCHHHHHHHHHHHHH
Confidence            47999999999999999999998642 2 1334455433222  12 2  57799999976533322211112    222


Q ss_pred             HHhhhcCCccEEEEEEECCCCCCHH------------HHH-----hcCCCCcHHHHHHHHHhh------HHHHHhhcc--
Q 038053          100 RIGLAKGGIHAVLVVFSVRSRFSQE------------EEA-----ANGGQPYTDEFLAELKRG------ATELRDQQA--  154 (231)
Q Consensus       100 ~~~~~~~~~~~il~vvd~~~~~~~~------------~~~-----~~~~~~~~~~~~~~~~~~------~~~l~~~~~--  154 (231)
                      ++......++.++.++|..+ +...            +..     .....|++ .+.++.|..      ...+...++  
T Consensus        75 ~~~~~~~~~~~v~~v~d~~s-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~  152 (190)
T 2cxx_A           75 FIEDNAKNIDVAVLVVDGKA-APEIIKRWEKRGEIPIDVEFYQFLRELDIPTI-VAVNKLDKIKNVQEVINFLAEKFEVP  152 (190)
T ss_dssp             HHHHHGGGCCEEEEEEETTH-HHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEE-EEEECGGGCSCHHHHHHHHHHHHTCC
T ss_pred             HHHhhhccCCEEEEEEcchh-hhhHHHhhhccCccHHHHHHHHHHHhcCCceE-EEeehHhccCcHHHHHHHHHHHhhhh
Confidence            22222456788889998762 1110            000     12234433 233333311      123332222  


Q ss_pred             ------chhhhhhhhHhhHHHHHHHHHHHHH
Q 038053          155 ------EVDSLKEYSKQEISKLMGQMQESYE  179 (231)
Q Consensus       155 ------~i~~is~~~~~~i~~l~~~i~~~~~  179 (231)
                            +++.+|+++|.|+++++..+.....
T Consensus       153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~  183 (190)
T 2cxx_A          153 LSEIDKVFIPISAKFGDNIERLKNRIFEVIR  183 (190)
T ss_dssp             GGGHHHHEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             hhccCCcEEEEecCCCCCHHHHHHHHHHhcc
Confidence                  3577899999999999988876543

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.26  E-value=1.9e-11  Score=104.71  Aligned_cols=81  Identities=20%  Similarity=0.230  Sum_probs=50.3

Q ss_pred             CCCCCCcccCCCcccCCCCCCceE--EEEEcCCCCCHHHHHHHHhCCCcccccc--CCCCcceeeeeeeEEeeCC--cEE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRT--VVLLGRTGNGKSATGNSILGRKAFKASA--DSSGVTKTCEMKTTVLKDG--QVV   75 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~--i~lvG~~g~GKSTLin~l~g~~~~~~~~--~~~~~t~~~~~~~~~~~~~--~~~   75 (231)
                      +++|++.+ ++++++++++|  ..  ++|+|+||||||||+|+|+|........  ..++.+.. .........+  ..+
T Consensus        22 ~~~y~~~~-L~~vsl~i~~G--ei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~-~i~~v~Q~~~l~~~l   97 (427)
T 2qag_B           22 HVGFDSLP-DQLVNKSVSQG--FCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQ-SNTYDLQESNVRLKL   97 (427)
T ss_dssp             CC-CC--C-HHHHHHSCC-C--CEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEE-EEEEEEEC--CEEEE
T ss_pred             EEEECCee-cCCCceEecCC--CeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEe-eEEEEeecCcccccc
Confidence            46788777 99999999999  66  9999999999999999999985321101  11222222 2222222112  257


Q ss_pred             EEEeCCCCcCC
Q 038053           76 NVIDTPGLFDS   86 (231)
Q Consensus        76 ~l~Dtpg~~~~   86 (231)
                      .++|+||+...
T Consensus        98 tv~D~~~~g~~  108 (427)
T 2qag_B           98 TIVSTVGFGDQ  108 (427)
T ss_dssp             EEEEEECCCC-
T ss_pred             chhhhhhhhhc
Confidence            89999998753

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.26  E-value=1.7e-12  Score=104.00  Aligned_cols=77  Identities=14%  Similarity=0.070  Sum_probs=55.7

Q ss_pred             CCCC-CCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee----eEEeeCCcEEE
Q 038053            2 SSGM-GERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK----TTVLKDGQVVN   76 (231)
Q Consensus         2 ~~~~-~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~   76 (231)
                      ++.| ++..++++++|++++|  .+++|+|+||||||||+++|+|...+    ..|.+.......    .... .....+
T Consensus         8 ~~~y~~~~~vl~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p----~~G~i~~~g~~~~~~~~~~~-~~~i~~   80 (243)
T 1mv5_A            8 DFAYDDSEQILRDISFEAQPN--SIIAFAGPSGGGKSTIFSLLERFYQP----TAGEITIDGQPIDNISLENW-RSQIGF   80 (243)
T ss_dssp             EECSSSSSCSEEEEEEEECTT--EEEEEECCTTSSHHHHHHHHTTSSCC----SBSCEEETTEESTTTSCSCC-TTTCCE
T ss_pred             EEEeCCCCceEEEeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCC----CCcEEEECCEEhhhCCHHHH-HhhEEE
Confidence            5678 6778999999999999  99999999999999999999999874    333333222110    0011 334667


Q ss_pred             EEeCCCCcC
Q 038053           77 VIDTPGLFD   85 (231)
Q Consensus        77 l~Dtpg~~~   85 (231)
                      +++.|.+++
T Consensus        81 v~q~~~l~~   89 (243)
T 1mv5_A           81 VSQDSAIMA   89 (243)
T ss_dssp             ECCSSCCCC
T ss_pred             EcCCCcccc
Confidence            788776654

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.26  E-value=6.3e-13  Score=111.85  Aligned_cols=86  Identities=15%  Similarity=0.101  Sum_probs=63.1

Q ss_pred             CCCCCCcc--cCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee------EEeeCCc
Q 038053            2 SSGMGERV--IDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT------TVLKDGQ   73 (231)
Q Consensus         2 ~~~~~~~~--~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~------~~~~~~~   73 (231)
                      ++.|++..  ++++++|++++|  ..++|+|+||||||||+++|+|...+..    |.+........      .......
T Consensus        10 ~~~y~~~~~~vl~~vsl~i~~G--e~~~llGpnGsGKSTLLr~iaGl~~p~~----G~I~i~g~~i~~~~~~~~~~~~r~   83 (353)
T 1oxx_K           10 SKVFKKGKVVALDNVNINIENG--ERFGILGPSGAGKTTFMRIIAGLDVPST----GELYFDDRLVASNGKLIVPPEDRK   83 (353)
T ss_dssp             EEEEGGGTEEEEEEEEEEECTT--CEEEEECSCHHHHHHHHHHHHTSSCCSE----EEEEETTEEEEETTEESSCGGGSC
T ss_pred             EEEECCEeeeeEeceEEEECCC--CEEEEECCCCCcHHHHHHHHhCCCCCCc----eEEEECCEECcccccccCChhhCC
Confidence            56788878  999999999999  9999999999999999999999987433    33332221110      0011345


Q ss_pred             EEEEEeCCCCcCCCCCchHH
Q 038053           74 VVNVIDTPGLFDSSAGSEFV   93 (231)
Q Consensus        74 ~~~l~Dtpg~~~~~~~~~~~   93 (231)
                      ..++++.+.+++..++.+++
T Consensus        84 ig~v~Q~~~l~~~ltv~eni  103 (353)
T 1oxx_K           84 IGMVFQTWALYPNLTAFENI  103 (353)
T ss_dssp             EEEEETTSCCCTTSCHHHHH
T ss_pred             EEEEeCCCccCCCCCHHHHH
Confidence            78899999998876655543

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.26  E-value=1.6e-11  Score=94.81  Aligned_cols=140  Identities=18%  Similarity=0.110  Sum_probs=76.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHH
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKR  100 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~  100 (231)
                      ..+|+++|.+|+|||||+|.|++...........+.+..  ...... .+  ..+.++||||....    .   ....  
T Consensus        28 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~-~~~~~~l~i~Dt~G~~~~----~---~~~~--   95 (199)
T 2p5s_A           28 AYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQ--MKTLIV-DGERTVLQLWDTAGQERF----R---SIAK--   95 (199)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHHCCCC----------CE--EEEEEE-TTEEEEEEEEECTTCTTC----H---HHHH--
T ss_pred             CeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeE--EEEEEE-CCEEEEEEEEECCCCcch----h---hhHH--
Confidence            389999999999999999999987532110111122211  111222 22  45789999996542    1   1111  


Q ss_pred             HhhhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhh---------------HHHHHhhcc-c
Q 038053          101 IGLAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRG---------------ATELRDQQA-E  155 (231)
Q Consensus       101 ~~~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~---------------~~~l~~~~~-~  155 (231)
                        ..+..+|++++|+|+++..+..+..         .....|++ .+.++.|..               ...+....+ +
T Consensus        96 --~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-lv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~  172 (199)
T 2p5s_A           96 --SYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIM-LVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGAL  172 (199)
T ss_dssp             --HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEE-EEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCE
T ss_pred             --HHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEE-EEEECcccccccccccccccCHHHHHHHHHHcCCe
Confidence              2234579999999998543222211         11233433 233333311               011111112 5


Q ss_pred             hhhhhhhhHhhHHHHHHHHHHH
Q 038053          156 VDSLKEYSKQEISKLMGQMQES  177 (231)
Q Consensus       156 i~~is~~~~~~i~~l~~~i~~~  177 (231)
                      ++.+|+++|.|+++++..+...
T Consensus       173 ~~~~SA~~g~gv~el~~~l~~~  194 (199)
T 2p5s_A          173 FCETSAKDGSNIVEAVLHLARE  194 (199)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHHH
Confidence            6778999999999988887664

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.26  E-value=3.8e-12  Score=106.34  Aligned_cols=137  Identities=12%  Similarity=0.060  Sum_probs=83.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+|+|.+|+|||||+|.|++......   .  .|.......... .+..+.++||||......           ....
T Consensus       166 ~kI~ivG~~~vGKSsLl~~l~~~~~~~~---~--pT~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~-----------~~~~  228 (329)
T 3o47_A          166 MRILMVGLDAAGKTTILYKLKLGEIVTT---I--PTIGFNVETVEY-KNISFTVWDVGGQDKIRP-----------LWRH  228 (329)
T ss_dssp             EEEEEEESTTSSHHHHHHHTCSSCCEEE---E--EETTEEEEEEEE-TTEEEEEEECC-----CC-----------SHHH
T ss_pred             ceEEEECCCCccHHHHHHHHhCCCCCCc---c--cccceEEEEEec-CcEEEEEEECCCCHhHHH-----------HHHH
Confidence            5899999999999999999998764211   1  133333344444 677899999999543221           1122


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH------hc----CCCCcHHHHHHHHHhh----HHHHHhhcc---------chhhhh
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA------AN----GGQPYTDEFLAELKRG----ATELRDQQA---------EVDSLK  160 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~----~~~l~~~~~---------~i~~is  160 (231)
                      .+..+|++++|+|+++.-+.....      ..    ...|++ .+.++.|..    ...+...+.         +++.+|
T Consensus       229 ~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~pii-lV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vS  307 (329)
T 3o47_A          229 YFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLL-VFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATC  307 (329)
T ss_dssp             HHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEE-EEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECB
T ss_pred             HhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEE-EEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEE
Confidence            346789999999998544433322      11    133333 344444421    112222221         467899


Q ss_pred             hhhHhhHHHHHHHHHHHH
Q 038053          161 EYSKQEISKLMGQMQESY  178 (231)
Q Consensus       161 ~~~~~~i~~l~~~i~~~~  178 (231)
                      +++|.|+++++..+...+
T Consensus       308 Ak~g~gi~el~~~l~~~l  325 (329)
T 3o47_A          308 ATSGDGLYEGLDWLSNQL  325 (329)
T ss_dssp             TTTTBTHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHH
Confidence            999999999999887654

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.26  E-value=1.4e-12  Score=104.14  Aligned_cols=66  Identities=17%  Similarity=0.167  Sum_probs=51.7

Q ss_pred             CCCCC--CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEe
Q 038053            2 SSGMG--ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVID   79 (231)
Q Consensus         2 ~~~~~--~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~D   79 (231)
                      ++.|+  +..++++++|++++|  .+++|+|+||||||||+++|+|...+..    |.+.         + .+...++++
T Consensus        10 ~~~y~~~~~~vl~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~----G~I~---------~-~g~i~~v~Q   73 (237)
T 2cbz_A           10 TFTWARSDPPTLNGITFSIPEG--ALVAVVGQVGCGKSSLLSALLAEMDKVE----GHVA---------I-KGSVAYVPQ   73 (237)
T ss_dssp             EEESCTTSCCSEEEEEEEECTT--CEEEEECSTTSSHHHHHHHHTTCSEEEE----EEEE---------E-CSCEEEECS
T ss_pred             EEEeCCCCCceeeeeEEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCC----ceEE---------E-CCEEEEEcC
Confidence            56676  578999999999999  9999999999999999999999987432    2222         1 345667777


Q ss_pred             CCCC
Q 038053           80 TPGL   83 (231)
Q Consensus        80 tpg~   83 (231)
                      .|.+
T Consensus        74 ~~~~   77 (237)
T 2cbz_A           74 QAWI   77 (237)
T ss_dssp             SCCC
T ss_pred             CCcC
Confidence            7654

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.25  E-value=1.4e-11  Score=94.84  Aligned_cols=139  Identities=16%  Similarity=0.143  Sum_probs=79.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeC--CcEEEEEeCCCCcCCCCCchHHHHHHHHH
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDSSAGSEFVGKEIVKR  100 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~  100 (231)
                      ..+|+++|.+|+|||||+|.+++......  ..+..... ....... .  ...+.++||||...     ...   ... 
T Consensus        28 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~--~~~t~~~~-~~~~~~~-~~~~~~~~l~Dt~G~~~-----~~~---~~~-   94 (196)
T 2atv_A           28 EVKLAIFGRAGVGKSALVVRFLTKRFIWE--YDPTLEST-YRHQATI-DDEVVSMEILDTAGQED-----TIQ---REG-   94 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSC--CCTTCCEE-EEEEEEE-TTEEEEEEEEECCCCCC-----CHH---HHH-
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCcc--cCCCCCce-EEEEEEE-CCEEEEEEEEECCCCCc-----ccc---hhh-
Confidence            37999999999999999999998754211  11111111 1111222 3  34578999999775     111   111 


Q ss_pred             HhhhcCCccEEEEEEECCCCCCHHHHH----------hcCCCCcHHHHHHHHHhhH---------HHHHhhcc-chhhhh
Q 038053          101 IGLAKGGIHAVLVVFSVRSRFSQEEEA----------ANGGQPYTDEFLAELKRGA---------TELRDQQA-EVDSLK  160 (231)
Q Consensus       101 ~~~~~~~~~~il~vvd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~---------~~l~~~~~-~i~~is  160 (231)
                         .+..+|++++|+|+++.-+..+..          .....|++ .+.++.|...         ..+....+ +++.+|
T Consensus        95 ---~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S  170 (196)
T 2atv_A           95 ---HMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLI-LVGNKADLDHSRQVSTEEGEKLATELACAFYECS  170 (196)
T ss_dssp             ---HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEE-EEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECC
T ss_pred             ---hhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEE-EEEECcccccccccCHHHHHHHHHHhCCeEEEEC
Confidence               223569999999998532211111          11233443 3334433110         12222222 677799


Q ss_pred             hhhHh-hHHHHHHHHHHHH
Q 038053          161 EYSKQ-EISKLMGQMQESY  178 (231)
Q Consensus       161 ~~~~~-~i~~l~~~i~~~~  178 (231)
                      ++++. |+.+++..+....
T Consensus       171 a~~g~~gi~~l~~~l~~~i  189 (196)
T 2atv_A          171 ACTGEGNITEIFYELCREV  189 (196)
T ss_dssp             TTTCTTCHHHHHHHHHHHH
T ss_pred             CCcCCcCHHHHHHHHHHHH
Confidence            99999 9999988877654

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.25  E-value=3.7e-11  Score=91.18  Aligned_cols=138  Identities=14%  Similarity=0.086  Sum_probs=79.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+++|.+|+|||||+|.+++.....   ...+++.......... .+  ..+.++||||.....           ...
T Consensus         6 ~~i~~~G~~~~GKssl~~~l~~~~~~~---~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~-----------~~~   70 (186)
T 1mh1_A            6 IKCVVVGDGAVGKTCLLISYTTNAFPG---EYIPTVFDNYSANVMV-DGKPVNLGLWDTAGQEDYD-----------RLR   70 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSSCCS---SCCCCSCCEEEEEEEE-TTEEEEEEEECCCCSGGGT-----------TTG
T ss_pred             EEEEEECCCCCCHHHHHHHHHcCCCCC---CcCCcccceeEEEEEE-CCEEEEEEEEECCCCHhHH-----------HHH
Confidence            689999999999999999999764311   1111221111111222 33  345689999975421           112


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhhH---------------------HHHHh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRGA---------------------TELRD  151 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~---------------------~~l~~  151 (231)
                      ...+..+|++++|+|+++..+..+..         .....|++ .+.++.|...                     ..+..
T Consensus        71 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~  149 (186)
T 1mh1_A           71 PLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPII-LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK  149 (186)
T ss_dssp             GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEE-EEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHH
T ss_pred             HHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEE-EEeEcccccccchhhhhhcccccccCCHHHHHHHHH
Confidence            23457889999999998543222211         11234443 2223322100                     11211


Q ss_pred             hcc--chhhhhhhhHhhHHHHHHHHHHH
Q 038053          152 QQA--EVDSLKEYSKQEISKLMGQMQES  177 (231)
Q Consensus       152 ~~~--~i~~is~~~~~~i~~l~~~i~~~  177 (231)
                      ..+  +++.+||++|.|+++++..+.+.
T Consensus       150 ~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  177 (186)
T 1mh1_A          150 EIGAVKYLECSALTQRGLKTVFDEAIRA  177 (186)
T ss_dssp             HTTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             hcCCcEEEEecCCCccCHHHHHHHHHHH
Confidence            222  57779999999999998887664

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.25  E-value=3.1e-12  Score=110.05  Aligned_cols=151  Identities=18%  Similarity=0.174  Sum_probs=89.9

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHH
Q 038053           20 SNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVK   99 (231)
Q Consensus        20 ~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~   99 (231)
                      +....+|+|+|.+|+|||||+|.|++...... ....++|.+.............+.++||||+.+...........   
T Consensus        31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~-~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~---  106 (423)
T 3qq5_A           31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIV-SDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEK---  106 (423)
T ss_dssp             -CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHH---
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHcCCCCcc-CCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHH---
Confidence            33457999999999999999999999875333 24566676666655555233488999999997644332221112   


Q ss_pred             HHhhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhhH-------HHHHhhcc-chhhhhhhhHhh
Q 038053          100 RIGLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRGA-------TELRDQQA-EVDSLKEYSKQE  166 (231)
Q Consensus       100 ~~~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-------~~l~~~~~-~i~~is~~~~~~  166 (231)
                       ....+..+|++++|+|++  ....+..     .....|++ .++|+.|...       ..+.+..+ +++.+|+++|.|
T Consensus       107 -~~~~l~~aD~vllVvD~~--~~~~~~~~l~~l~~~~~piI-vV~NK~Dl~~~~~~~~~~~l~~~~g~~v~~vSAktg~g  182 (423)
T 3qq5_A          107 -ARRVFYRADCGILVTDSA--PTPYEDDVVNLFKEMEIPFV-VVVNKIDVLGEKAEELKGLYESRYEAKVLLVSALQKKG  182 (423)
T ss_dssp             -HHHHHTSCSEEEEECSSS--CCHHHHHHHHHHHHTTCCEE-EECCCCTTTTCCCTHHHHHSSCCTTCCCCCCSSCCTTS
T ss_pred             -HHHHHhcCCEEEEEEeCC--ChHHHHHHHHHHHhcCCCEE-EEEeCcCCCCccHHHHHHHHHHHcCCCEEEEECCCCCC
Confidence             223446789999999983  3333332     22234443 4445544211       12222222 678899999999


Q ss_pred             HHHHHHHHHHHH
Q 038053          167 ISKLMGQMQESY  178 (231)
Q Consensus       167 i~~l~~~i~~~~  178 (231)
                      +++++..+.+..
T Consensus       183 I~eL~~~L~~~l  194 (423)
T 3qq5_A          183 FDDIGKTISEIL  194 (423)
T ss_dssp             TTTHHHHHHHHS
T ss_pred             HHHHHHHHHHhh
Confidence            999999988765

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.25  E-value=1.8e-11  Score=90.88  Aligned_cols=139  Identities=17%  Similarity=0.191  Sum_probs=79.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+++|.+|+|||||+|.+++.....   ...+++.......... .+  ..+.++||||.....    ..    ..  
T Consensus         4 ~~i~v~G~~~~GKssl~~~l~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~----~~----~~--   69 (166)
T 2ce2_X            4 YKLVVVGAGGVGKSALTIQLIQNHFVD---ECDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYS----AM----RD--   69 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSSCCS---CCCTTCCEEEEEEEEE-TTEEEEEEEEECCCCSSCC----HH----HH--
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcCcc---ccCCccceEEEEEEEE-CCEEEEEEEEECCCchhhh----HH----HH--
Confidence            689999999999999999999875421   1122222111112222 33  346789999976422    11    11  


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH--------h--cCCCCcHHHHHHHHHhh--------HHHHHhhcc-chhhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------A--NGGQPYTDEFLAELKRG--------ATELRDQQA-EVDSLKEY  162 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~--~~~~~~~~~~~~~~~~~--------~~~l~~~~~-~i~~is~~  162 (231)
                       ..+..+|.+++++|+++..+..+..        .  ....|++ .+.++.|..        ...+....+ +++.+|+.
T Consensus        70 -~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~i-iv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~  147 (166)
T 2ce2_X           70 -QYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV-LVGNKSDLAARTVESRQAQDLARSYGIPYIETSAK  147 (166)
T ss_dssp             -HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEE-EEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECTT
T ss_pred             -HhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE-EEEEchhhhhcccCHHHHHHHHHHcCCeEEEecCC
Confidence             1223568999999998433222211        1  1133433 333443310        012222222 67789999


Q ss_pred             hHhhHHHHHHHHHHHH
Q 038053          163 SKQEISKLMGQMQESY  178 (231)
Q Consensus       163 ~~~~i~~l~~~i~~~~  178 (231)
                      ++.|+.+++..+....
T Consensus       148 ~~~gi~~l~~~l~~~~  163 (166)
T 2ce2_X          148 TRQGVEDAFYTLVREI  163 (166)
T ss_dssp             TCTTHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            9999999988877643

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.24  E-value=1.6e-11  Score=96.05  Aligned_cols=140  Identities=16%  Similarity=0.075  Sum_probs=72.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHH
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKR  100 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~  100 (231)
                      ..+|+++|.+|+|||||+|.+++.....   ...+++.......... .+  ..+.++||||.....           ..
T Consensus        34 ~~ki~vvG~~~vGKSsli~~l~~~~~~~---~~~~t~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~-----------~~   98 (214)
T 2j1l_A           34 SVKVVLVGDGGCGKTSLLMVFADGAFPE---SYTPTVFERYMVNLQV-KGKPVHLHIWDTAGQDDYD-----------RL   98 (214)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHC----------CCCCCEEEEEEEEE-TTEEEEEEEEEC--------------------
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcCCCCC---CCCCccceeEEEEEEE-CCEEEEEEEEECCCchhhh-----------HH
Confidence            3799999999999999999999875421   1111221111112222 33  367899999965321           11


Q ss_pred             HhhhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhhH---------------------HHHH
Q 038053          101 IGLAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRGA---------------------TELR  150 (231)
Q Consensus       101 ~~~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~---------------------~~l~  150 (231)
                      ....+..+|++++|+|+++..+.....         .....|++ .+.++.|...                     ..+.
T Consensus        99 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~  177 (214)
T 2j1l_A           99 RPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPII-VVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMA  177 (214)
T ss_dssp             ------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEE-EEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred             HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEE-EEEEChhhhccchhhhhhcccccCcccHHHHHHHH
Confidence            122346889999999998532222211         11233433 2223322100                     1222


Q ss_pred             hhcc--chhhhhhhhHhhHHHHHHHHHHHH
Q 038053          151 DQQA--EVDSLKEYSKQEISKLMGQMQESY  178 (231)
Q Consensus       151 ~~~~--~i~~is~~~~~~i~~l~~~i~~~~  178 (231)
                      ...+  +++.+|+++|.|+++++..+....
T Consensus       178 ~~~~~~~~~~~SA~~g~gi~el~~~l~~~~  207 (214)
T 2j1l_A          178 RSVGAVAYLECSARLHDNVHAVFQEAAEVA  207 (214)
T ss_dssp             HHTTCSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             HhcCCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence            2222  567899999999999998887654

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.24  E-value=7.3e-13  Score=112.05  Aligned_cols=86  Identities=19%  Similarity=0.139  Sum_probs=57.0

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEEeeCCcEEEEEeC
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTVLKDGQVVNVIDT   80 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~Dt   80 (231)
                      ++.|++..++++++|++++|  ..++|+|+||||||||+++|+|...+..|    .+....... ..........+++|.
T Consensus        18 ~~~y~~~~vl~~vsl~i~~G--e~~~llGpnGsGKSTLLr~iaGl~~p~~G----~I~i~g~~i~~~~~~~r~ig~v~Q~   91 (372)
T 1v43_A           18 TKRFGNFTAVNKLNLTIKDG--EFLVLLGPSGCGKTTTLRMIAGLEEPTEG----RIYFGDRDVTYLPPKDRNISMVFQS   91 (372)
T ss_dssp             EEEETTEEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHHTSSCCSEE----EEEETTEECTTSCGGGGTEEEEEC-
T ss_pred             EEEECCEEEEeeeEEEECCC--CEEEEECCCCChHHHHHHHHHcCCCCCce----EEEECCEECCCCChhhCcEEEEecC
Confidence            56788888999999999999  99999999999999999999999874333    222211110 000002357789999


Q ss_pred             CCCcCCCCCchHH
Q 038053           81 PGLFDSSAGSEFV   93 (231)
Q Consensus        81 pg~~~~~~~~~~~   93 (231)
                      +.++++.++.+++
T Consensus        92 ~~l~~~ltv~eni  104 (372)
T 1v43_A           92 YAVWPHMTVYENI  104 (372)
T ss_dssp             -----CCCHHHHH
T ss_pred             cccCCCCCHHHHH
Confidence            8888876655443

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.24  E-value=6.8e-11  Score=97.80  Aligned_cols=92  Identities=21%  Similarity=0.213  Sum_probs=62.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+|+|.+|||||||+|.+++...... ...++.|............+..+.++||||....      ....+......
T Consensus         4 ~KI~lvG~~~vGKSSLi~~l~~~~~~~~-~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~------~~~~~~~~~~~   76 (307)
T 3r7w_A            4 SKLLLMGRSGSGKSSMRSIIFSNYSAFD-TRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF------MENYFTKQKDH   76 (307)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHSCCCTGG-GGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH------HHHHHTTTHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcc-ccCcCCccceEEEEEEeCCceEEEEEECCCcHHH------hhhhhhhHHHH
Confidence            7899999999999999999988743322 1356667666655554435678899999996531      11111112223


Q ss_pred             hcCCccEEEEEEECCCCCC
Q 038053          104 AKGGIHAVLVVFSVRSRFS  122 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~  122 (231)
                      .+..+|++++|+|+++..+
T Consensus        77 ~~~~ad~vi~V~D~t~~~s   95 (307)
T 3r7w_A           77 IFQMVQVLIHVFDVESTEV   95 (307)
T ss_dssp             HHTTCSEEEEEEETTCSCH
T ss_pred             HhccCCEEEEEEECCChhh
Confidence            3468899999999986544

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.24  E-value=5.8e-11  Score=91.13  Aligned_cols=139  Identities=12%  Similarity=0.080  Sum_probs=81.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCc--EEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+++|.+|+|||||+|.+++....    .....|............+.  .+.++||||.....           ...
T Consensus        24 ~ki~~vG~~~~GKSsl~~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~~~   88 (194)
T 3reg_A           24 LKIVVVGDGAVGKTCLLLAFSKGEIP----TAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYD-----------RLR   88 (194)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCC----SSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGT-----------TTG
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCCCC----CccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHH-----------HHh
Confidence            79999999999999999999987642    11112222222111111333  45899999954321           112


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHH-H--------hcCCCCcHHHHHHHHHhh-----------HHHHHhhcc-c-hhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEE-A--------ANGGQPYTDEFLAELKRG-----------ATELRDQQA-E-VDSL  159 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~-~--------~~~~~~~~~~~~~~~~~~-----------~~~l~~~~~-~-i~~i  159 (231)
                      ...+..+|++++|+|+++..+..+. .        .....|++ .+.++.|..           ...+....+ + ++.+
T Consensus        89 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (194)
T 3reg_A           89 PLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV-LVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEA  167 (194)
T ss_dssp             GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEE-EEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEEC
T ss_pred             HhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE-EEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEe
Confidence            3345788999999999854333332 1        11223333 233443310           012222222 3 7789


Q ss_pred             hhhhHhhHHHHHHHHHHHH
Q 038053          160 KEYSKQEISKLMGQMQESY  178 (231)
Q Consensus       160 s~~~~~~i~~l~~~i~~~~  178 (231)
                      |+++|.|+++++..+.+..
T Consensus       168 Sa~~~~gi~~l~~~l~~~i  186 (194)
T 3reg_A          168 SSVAKIGLNEVFEKSVDCI  186 (194)
T ss_dssp             BTTTTBSHHHHHHHHHHHH
T ss_pred             ecCCCCCHHHHHHHHHHHH
Confidence            9999999999988877643

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.23  E-value=1.1e-10  Score=89.94  Aligned_cols=139  Identities=15%  Similarity=0.060  Sum_probs=79.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCc--EEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+++|.+|+|||||+|.+++.... .  ...+++.......... .+.  .+.++||||.......           .
T Consensus        21 ~ki~~~G~~~~GKssl~~~l~~~~~~-~--~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~-----------~   85 (201)
T 2q3h_A           21 VKCVLVGDGAVGKTSLVVSYTTNGYP-T--EYIPTAFDNFSAVVSV-DGRPVRLQLCDTAGQDEFDKL-----------R   85 (201)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC-----------CCSSEEEEEEEEE-TTEEEEEEEEECCCSTTCSSS-----------G
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCC-C--CCCCcccceeEEEEEE-CCEEEEEEEEECCCCHHHHHH-----------h
Confidence            89999999999999999999987631 1  1222222222222222 443  5669999998653321           1


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhh---------------------HHHHHh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRG---------------------ATELRD  151 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~---------------------~~~l~~  151 (231)
                      ...+..+|++++|+|+++..+..+..         .....|++ .+.++.|..                     ...+..
T Consensus        86 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~  164 (201)
T 2q3h_A           86 PLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPII-LVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAE  164 (201)
T ss_dssp             GGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEE-EEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHH
T ss_pred             HhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE-EEEECHhhhhchhhhhhhcccccccCCHHHHHHHHH
Confidence            23457789999999998543322211         11233333 222332210                     012222


Q ss_pred             hcc--chhhhhhhhHhhHHHHHHHHHHHH
Q 038053          152 QQA--EVDSLKEYSKQEISKLMGQMQESY  178 (231)
Q Consensus       152 ~~~--~i~~is~~~~~~i~~l~~~i~~~~  178 (231)
                      ..+  +++.+|++++.|+++++..+...+
T Consensus       165 ~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~  193 (201)
T 2q3h_A          165 EIKAASYIECSALTQKNLKEVFDAAIVAG  193 (201)
T ss_dssp             HHTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             hcCCcEEEEEecCCCCCHHHHHHHHHHHH
Confidence            222  567789999999999998887654

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.23  E-value=1e-12  Score=110.56  Aligned_cols=86  Identities=14%  Similarity=0.021  Sum_probs=61.8

Q ss_pred             CCCCCC----cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE------EeeC
Q 038053            2 SSGMGE----RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT------VLKD   71 (231)
Q Consensus         2 ~~~~~~----~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~------~~~~   71 (231)
                      ++.|+.    ..+|++++|++++|  .+++|+|+||||||||+++|+|...+.    .|.+.........      ....
T Consensus        31 s~~y~~~~~~~~aL~~vsl~i~~G--ei~~IiGpnGaGKSTLlr~i~GL~~p~----~G~I~i~G~~i~~~~~~~~~~~r  104 (366)
T 3tui_C           31 TKVFHQGTRTIQALNNVSLHVPAG--QIYGVIGASGAGKSTLIRCVNLLERPT----EGSVLVDGQELTTLSESELTKAR  104 (366)
T ss_dssp             EEEEECSSSEEEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHHTSSCCS----EEEEEETTEECSSCCHHHHHHHH
T ss_pred             EEEeCCCCCCeEEEEeeEEEEcCC--CEEEEEcCCCchHHHHHHHHhcCCCCC----ceEEEECCEECCcCCHHHHHHHh
Confidence            455643    46899999999999  999999999999999999999998743    3333322211000      0002


Q ss_pred             CcEEEEEeCCCCcCCCCCchHH
Q 038053           72 GQVVNVIDTPGLFDSSAGSEFV   93 (231)
Q Consensus        72 ~~~~~l~Dtpg~~~~~~~~~~~   93 (231)
                      ....+++|.|.+++..++.+++
T Consensus       105 ~~Ig~v~Q~~~l~~~~TV~env  126 (366)
T 3tui_C          105 RQIGMIFQHFNLLSSRTVFGNV  126 (366)
T ss_dssp             TTEEEECSSCCCCTTSCHHHHH
T ss_pred             CcEEEEeCCCccCCCCCHHHHH
Confidence            4578999999998877766654

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.23  E-value=1.7e-11  Score=94.91  Aligned_cols=143  Identities=13%  Similarity=0.099  Sum_probs=83.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEee-CCcEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      ..+|+++|.+|+|||||+|.|++......  ..+..+.+......... ....+.++||||.......           .
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-----------~   74 (207)
T 1vg8_A            8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQ--YKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSL-----------G   74 (207)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSS--CCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCS-----------C
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCCCCCC--CCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHh-----------H
Confidence            37999999999999999999998764211  22233333222222221 1246889999996542211           1


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH---------hc----CCCCcHHHHHHHHHhh--------HHHHHh-hc-cchhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA---------AN----GGQPYTDEFLAELKRG--------ATELRD-QQ-AEVDS  158 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~---------~~----~~~~~~~~~~~~~~~~--------~~~l~~-~~-~~i~~  158 (231)
                      ...+..+|++++|+|+++..+.....         ..    ...|++ .+.++.|..        ...+.. .. -+++.
T Consensus        75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  153 (207)
T 1vg8_A           75 VAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV-VLGNKIDLENRQVATKRAQAWCYSKNNIPYFE  153 (207)
T ss_dssp             CGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEE-EEEECTTSSCCCSCHHHHHHHHHHTTSCCEEE
T ss_pred             HHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEE-EEEECCCCcccccCHHHHHHHHHhcCCceEEE
Confidence            23346789999999998532211111         10    123333 233333310        012221 11 26778


Q ss_pred             hhhhhHhhHHHHHHHHHHHHH
Q 038053          159 LKEYSKQEISKLMGQMQESYE  179 (231)
Q Consensus       159 is~~~~~~i~~l~~~i~~~~~  179 (231)
                      +||++|.|+++++..+.....
T Consensus       154 ~Sa~~g~gi~~l~~~l~~~~~  174 (207)
T 1vg8_A          154 TSAKEAINVEQAFQTIARNAL  174 (207)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHHH
Confidence            999999999999998877543

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.23  E-value=9.6e-12  Score=104.68  Aligned_cols=89  Identities=17%  Similarity=0.140  Sum_probs=58.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC-----------------cEEEEEeCCCCcCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG-----------------QVVNVIDTPGLFDS   86 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~~l~Dtpg~~~~   86 (231)
                      .+|+|||.||||||||+|+|++... .. ...+++|..+..+.... .+                 ..+.++||||+...
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~-~v-~~~p~tTi~p~~g~v~~-~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~   79 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGI-EA-ANYPFCTIEPNTGVVPM-PDPRLDALAEIVKPERILPTTMEFVDIAGLVAG   79 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEEC-CCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCC-cc-cCCCCceECceEEEEec-CCcccceeeeeecccceeeeEEEEEECCCCccc
Confidence            6899999999999999999999763 22 24555666555444443 22                 46889999999864


Q ss_pred             CCCchHHHHHHHHHHhhhcCCccEEEEEEECCC
Q 038053           87 SAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRS  119 (231)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~  119 (231)
                      ......++..++.    .+..+|++++|+|+++
T Consensus        80 a~~~~gl~~~fl~----~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           80 ASKGEGLGNKFLA----NIRETDAIGHVVRCFE  108 (363)
T ss_dssp             HHHHGGGTCCHHH----HHHTCSEEEEEEECSC
T ss_pred             ccccchHHHHHHH----HHHhcCeEEEEEecCC
Confidence            3211122222332    2357799999999984

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.22  E-value=8.9e-13  Score=107.23  Aligned_cols=78  Identities=21%  Similarity=0.109  Sum_probs=55.5

Q ss_pred             CCCCCC---cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eE--EeeCCcEE
Q 038053            2 SSGMGE---RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TT--VLKDGQVV   75 (231)
Q Consensus         2 ~~~~~~---~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~--~~~~~~~~   75 (231)
                      ++.|++   ..+|++++|++++|  .+++|+|+||||||||+++|+|...+..    |.+....... ..  ........
T Consensus        23 ~~~y~~~~~~~vl~~vsl~i~~G--e~~~i~G~nGsGKSTLlk~l~Gl~~p~~----G~I~~~g~~i~~~~~~~~~~~i~   96 (271)
T 2ixe_A           23 SFAYPNHPNVQVLQGLTFTLYPG--KVTALVGPNGSGKSTVAALLQNLYQPTG----GKVLLDGEPLVQYDHHYLHTQVA   96 (271)
T ss_dssp             EECCTTCTTSCCEEEEEEEECTT--CEEEEECSTTSSHHHHHHHHTTSSCCSE----EEEEETTEEGGGBCHHHHHHHEE
T ss_pred             EEEeCCCCCceeeEeeEEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCC----CEEEECCEEcccCCHHHHhccEE
Confidence            567765   78999999999999  9999999999999999999999987433    3222221110 00  00023467


Q ss_pred             EEEeCCCCcC
Q 038053           76 NVIDTPGLFD   85 (231)
Q Consensus        76 ~l~Dtpg~~~   85 (231)
                      ++++.|.+++
T Consensus        97 ~v~Q~~~l~~  106 (271)
T 2ixe_A           97 AVGQEPLLFG  106 (271)
T ss_dssp             EECSSCCCCS
T ss_pred             EEecCCcccc
Confidence            8888887765

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.22  E-value=6.5e-11  Score=107.97  Aligned_cols=150  Identities=14%  Similarity=0.137  Sum_probs=87.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceee-----------------------------------------
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTC-----------------------------------------   62 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~-----------------------------------------   62 (231)
                      +.|+++|.+++|||||+|+|+|......+  .+.+|+.+                                         
T Consensus        52 p~I~vvG~~saGKSSllnaL~g~~~LP~g--~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~  129 (772)
T 3zvr_A           52 PQIAVVGGQSAGKSSVLENFVGRDFLPRG--SGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  129 (772)
T ss_dssp             SEEEEEECTTTCHHHHHHHHHSSCCSCCS--SSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCccCcC--CccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence            69999999999999999999998653222  22222211                                         


Q ss_pred             ----------eeeeEEeeCCcEEEEEeCCCCcCCCCC--chHHHHHHHHHHhhhc-CCccEEEEEEECCCCCCHHHH-H-
Q 038053           63 ----------EMKTTVLKDGQVVNVIDTPGLFDSSAG--SEFVGKEIVKRIGLAK-GGIHAVLVVFSVRSRFSQEEE-A-  127 (231)
Q Consensus        63 ----------~~~~~~~~~~~~~~l~Dtpg~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~il~vvd~~~~~~~~~~-~-  127 (231)
                                ............+.++||||++.....  ...+...+...+.... ..+|++++|+|++..+...+. . 
T Consensus       130 g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~l  209 (772)
T 3zvr_A          130 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI  209 (772)
T ss_dssp             CSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHH
T ss_pred             CCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHH
Confidence                      000111112345789999999863321  1111122222222121 678999999999877665554 2 


Q ss_pred             ----hcCCCCcHHHHHHHHHhhH-----HHHHh--h------ccchhhhhhhhHhhHHHHHHHHHH
Q 038053          128 ----ANGGQPYTDEFLAELKRGA-----TELRD--Q------QAEVDSLKEYSKQEISKLMGQMQE  176 (231)
Q Consensus       128 ----~~~~~~~~~~~~~~~~~~~-----~~l~~--~------~~~i~~is~~~~~~i~~l~~~i~~  176 (231)
                          ...+.|.+ .++|++|.-.     ..+..  .      ..+++++||.+|.|++.|.+.+.+
T Consensus       210 l~~L~~~g~pvI-lVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~  274 (772)
T 3zvr_A          210 AKEVDPQGQRTI-GVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  274 (772)
T ss_dssp             HHHHCTTCSSEE-EEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred             HHHHHhcCCCEE-EEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence                22233433 4445544210     11211  1      126788999999999999888876

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.22  E-value=4e-12  Score=100.08  Aligned_cols=141  Identities=14%  Similarity=0.136  Sum_probs=80.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+|+|.+|+|||||+|.|++......  ..+..+.......... .+  ..+.++||||.......           .
T Consensus        14 ~ki~v~G~~~vGKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~-----------~   79 (223)
T 3cpj_B           14 FKIVLIGDSGVGKSNLLSRFTKNEFNMD--SKSTIGVEFATRTLEI-EGKRIKAQIWDTAGQERYRAI-----------T   79 (223)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHHCCCCC--------CCSEEEEEEEE-TTEEEEEEEECCTTTTTTTCC-----------C
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCCCCCC--CCCcccceeEEEEEEE-CCEEEEEEEEECCCccchhhh-----------H
Confidence            7899999999999999999998764221  1222222222222222 33  46789999996543211           1


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH--------h-cCCCCcHHHHHHHHHhhH---------HHHHhhcc-chhhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------A-NGGQPYTDEFLAELKRGA---------TELRDQQA-EVDSLKEY  162 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~---------~~l~~~~~-~i~~is~~  162 (231)
                      ...+..+|++++|+|+++..+..+..        . ....|++ .+.++.|...         ..+..... +++.+|++
T Consensus        80 ~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~pii-lv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~  158 (223)
T 3cpj_B           80 SAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVG-LIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSAL  158 (223)
T ss_dssp             GGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEE-EEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC
T ss_pred             HHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEE-EEEECcccccccccCHHHHHHHHHHcCCEEEEEeCC
Confidence            23456889999999998543322211        1 1123333 3334433110         12222222 56778999


Q ss_pred             hHhhHHHHHHHHHHHHH
Q 038053          163 SKQEISKLMGQMQESYE  179 (231)
Q Consensus       163 ~~~~i~~l~~~i~~~~~  179 (231)
                      ++.|+++++..+.....
T Consensus       159 ~~~gi~~l~~~l~~~i~  175 (223)
T 3cpj_B          159 NSENVDKAFEELINTIY  175 (223)
T ss_dssp             -CCCHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            99999999988877543

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.22  E-value=1.9e-11  Score=105.97  Aligned_cols=138  Identities=14%  Similarity=0.138  Sum_probs=84.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCccccc-----------------------------cCCCCcceeeeeeeEEeeCCc
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKAFKAS-----------------------------ADSSGVTKTCEMKTTVLKDGQ   73 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~~~~~   73 (231)
                      ..+|+++|.+|+|||||+|.|++.......                             ....++|.+........ .+.
T Consensus        17 ~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~-~~~   95 (439)
T 3j2k_7           17 HVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET-EKK   95 (439)
T ss_pred             eeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec-CCe
Confidence            379999999999999999999665321110                             01145666655555555 677


Q ss_pred             EEEEEeCCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCC-------HHHHH-----hcCCCCcHHHHHHH
Q 038053           74 VVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFS-------QEEEA-----ANGGQPYTDEFLAE  141 (231)
Q Consensus        74 ~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~-------~~~~~-----~~~~~~~~~~~~~~  141 (231)
                      .+.++||||..+           +.......+..+|++++|+|++++..       .+...     ...+.+.++.++|+
T Consensus        96 ~~~iiDTPGh~~-----------f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK  164 (439)
T 3j2k_7           96 HFTILDAPGHKS-----------FVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINK  164 (439)
T ss_pred             EEEEEECCChHH-----------HHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeec
Confidence            899999999543           22333334467899999999986643       12221     22233422234455


Q ss_pred             HHhh--------H----HHHHhhc----------cchhhhhhhhHhhHHHHHH
Q 038053          142 LKRG--------A----TELRDQQ----------AEVDSLKEYSKQEISKLMG  172 (231)
Q Consensus       142 ~~~~--------~----~~l~~~~----------~~i~~is~~~~~~i~~l~~  172 (231)
                      +|..        .    .++...+          -+++++||++|.|+.++..
T Consensus       165 ~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          165 MDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             CCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            4420        0    1222221          1578899999999988655

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.22  E-value=1.5e-11  Score=95.68  Aligned_cols=138  Identities=15%  Similarity=0.104  Sum_probs=78.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+++|.+|||||||+|.|++......  ..+.+... ....... .+  ..+.++||||......           ..
T Consensus        26 ~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~-~~~~~~~-~~~~~~~~i~Dt~G~~~~~~-----------~~   90 (207)
T 2fv8_A           26 KKLVVVGDGACGKTCLLIVFSKDEFPEV--YVPTVFEN-YVADIEV-DGKQVELALWDTAGQEDYDR-----------LR   90 (207)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSSCC---------CCE-EEEEEEE-TTEEEEEEEEECTTCTTCTT-----------TG
T ss_pred             cEEEEECcCCCCHHHHHHHHhcCCCCCc--CCCcccce-EEEEEEE-CCEEEEEEEEECCCcHHHHH-----------HH
Confidence            7999999999999999999998764211  11111111 1111222 33  3678899999754321           11


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHH--H-------hcCCCCcHHHHHHHHHhhH---------------------HHHHh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEE--A-------ANGGQPYTDEFLAELKRGA---------------------TELRD  151 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~--~-------~~~~~~~~~~~~~~~~~~~---------------------~~l~~  151 (231)
                      ...+..+|++++|+|+++.-+....  .       .....|++ .+.++.|...                     ..+..
T Consensus        91 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~  169 (207)
T 2fv8_A           91 PLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPII-LVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAV  169 (207)
T ss_dssp             GGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEE-EEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHH
T ss_pred             HhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE-EEEEchhhhccccchhhhhhcccCCCCHHHHHHHHH
Confidence            2345788999999999853222221  1       11234443 2333433110                     01111


Q ss_pred             hcc--chhhhhhhhHhhHHHHHHHHHHH
Q 038053          152 QQA--EVDSLKEYSKQEISKLMGQMQES  177 (231)
Q Consensus       152 ~~~--~i~~is~~~~~~i~~l~~~i~~~  177 (231)
                      ..+  +++.+|+++|.|+++++..+.+.
T Consensus       170 ~~~~~~~~~~SA~~g~gi~el~~~l~~~  197 (207)
T 2fv8_A          170 RIQAYDYLECSAKTKEGVREVFETATRA  197 (207)
T ss_dssp             HTTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             hcCCCEEEEeeCCCCCCHHHHHHHHHHH
Confidence            111  46778999999999999888764

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.21  E-value=5.9e-13  Score=106.86  Aligned_cols=77  Identities=19%  Similarity=0.132  Sum_probs=55.3

Q ss_pred             CCCC--CCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee----EEeeCCcEE
Q 038053            2 SSGM--GERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT----TVLKDGQVV   75 (231)
Q Consensus         2 ~~~~--~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~   75 (231)
                      ++.|  ++..++++++|++++|  .+++|+|+||||||||+++|+|...+..    |.+........    ... .....
T Consensus        14 ~~~y~~~~~~vl~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~----G~I~i~g~~~~~~~~~~~-~~~i~   86 (247)
T 2ff7_A           14 RFRYKPDSPVILDNINLSIKQG--EVIGIVGRSGSGKSTLTKLIQRFYIPEN----GQVLIDGHDLALADPNWL-RRQVG   86 (247)
T ss_dssp             EEESSTTSCEEEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHTTSSCCSE----EEEEETTEETTTSCHHHH-HHHEE
T ss_pred             EEEeCCCCcceeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCC----cEEEECCEEhhhCCHHHH-HhcEE
Confidence            5677  4678999999999999  9999999999999999999999987433    32222111000    001 23467


Q ss_pred             EEEeCCCCcC
Q 038053           76 NVIDTPGLFD   85 (231)
Q Consensus        76 ~l~Dtpg~~~   85 (231)
                      ++++.|.+++
T Consensus        87 ~v~Q~~~l~~   96 (247)
T 2ff7_A           87 VVLQDNVLLN   96 (247)
T ss_dssp             EECSSCCCTT
T ss_pred             EEeCCCcccc
Confidence            8888887765

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.21  E-value=1e-11  Score=105.23  Aligned_cols=131  Identities=12%  Similarity=0.111  Sum_probs=84.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhh
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLA  104 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~  104 (231)
                      +|+++|.+|+|||||+|.|+          ..++|.+.......+ .+..+.++||||..+.       ...+.    ..
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~----------~~giTi~~~~~~~~~-~~~~i~iiDtPGh~~f-------~~~~~----~~   80 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG----------KKGTSSDITMYNNDK-EGRNMVFVDAHSYPKT-------LKSLI----TA   80 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS----------EEEEESSSEEEEECS-SSSEEEEEECTTTTTC-------HHHHH----HH
T ss_pred             EEEEECCCCCCHHHHHHHHH----------hCCEEEEeeEEEEec-CCeEEEEEECCChHHH-------HHHHH----HH
Confidence            89999999999999999998          112333333333444 5678999999997652       11222    23


Q ss_pred             cCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHH-HHHhhH-------HHHHhhc-------cchhh--hhhh
Q 038053          105 KGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLA-ELKRGA-------TELRDQQ-------AEVDS--LKEY  162 (231)
Q Consensus       105 ~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~-------~~l~~~~-------~~i~~--is~~  162 (231)
                      +..+|.+++|+| ..++..+...     .....+..+.+++ ++|...       +++.+.+       -++++  +||+
T Consensus        81 ~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~  159 (370)
T 2elf_A           81 LNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDSTHMHAIDELKAKLKVITSGTVLQDWECISLNTNKS  159 (370)
T ss_dssp             HHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGSCHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTT
T ss_pred             HHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCCCHHHHHHHHHHHHHHHHhcCCCceEEEecccccc
Confidence            367899999999 7677655543     2233444233445 554310       2333332       16777  9999


Q ss_pred             h---HhhHHHHHHHHHHHH
Q 038053          163 S---KQEISKLMGQMQESY  178 (231)
Q Consensus       163 ~---~~~i~~l~~~i~~~~  178 (231)
                      +   +.|+++|+..+.+..
T Consensus       160 ~~~~g~gi~~L~~~l~~~~  178 (370)
T 2elf_A          160 AKNPFEGVDELKARINEVA  178 (370)
T ss_dssp             SSSTTTTHHHHHHHHHHHH
T ss_pred             cCcCCCCHHHHHHHHHhhc
Confidence            9   999999988776643

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.21  E-value=2.1e-11  Score=103.55  Aligned_cols=95  Identities=16%  Similarity=0.169  Sum_probs=51.1

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeC----------------CcEEEEEeC
Q 038053           17 TSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKD----------------GQVVNVIDT   80 (231)
Q Consensus        17 ~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~l~Dt   80 (231)
                      .+..+  .+|+|||.||||||||+|+|+|.... . ...+++|.....+......                ...+.++||
T Consensus        18 ~i~~~--~kvgIVG~pnvGKSTL~n~Ltg~~~~-~-~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDt   93 (396)
T 2ohf_A           18 RFGTS--LKIGIVGLPNVGKSTFFNVLTNSQAS-A-ENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDI   93 (396)
T ss_dssp             CSSSC--CCEEEECCSSSSHHHHHHHHHC---------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEEC
T ss_pred             hccCC--CEEEEECCCCCCHHHHHHHHHCCCcc-c-cCCCccccCceeEEEEECCccceeeccccCcccccccccEEEEC
Confidence            45566  89999999999999999999998642 2 2455666655554443311                234889999


Q ss_pred             CCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCC
Q 038053           81 PGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRS  119 (231)
Q Consensus        81 pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~  119 (231)
                      ||+....+....++..+...    +..+|++++|+|+.+
T Consensus        94 pGl~~~as~~~glg~~~l~~----ir~aD~Il~VvD~~~  128 (396)
T 2ohf_A           94 AGLVKGAHNGQGLGNAFLSH----ISACDGIFHLTRAFE  128 (396)
T ss_dssp             CC-----------CCHHHHH----HHTSSSEEEEEEC--
T ss_pred             CCcccccchhhHHHHHHHHH----HHhcCeEEEEEecCC
Confidence            99987544333333333333    357799999999873

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.21  E-value=2e-10  Score=96.32  Aligned_cols=39  Identities=15%  Similarity=0.049  Sum_probs=33.2

Q ss_pred             CCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 038053            6 GERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus         6 ~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      +...+++++++.+.++  .+|+++|+||+|||||+|.|++.
T Consensus        41 ~~~~~~~~l~~~~~~~--~~i~i~G~~g~GKSTl~~~l~~~   79 (341)
T 2p67_A           41 LSTQLLDAIMPYCGNT--LRLGVTGTPGAGKSTFLEAFGML   79 (341)
T ss_dssp             HHHHHHHHHGGGCSCS--EEEEEEECTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHhCCcccCCC--EEEEEEcCCCCCHHHHHHHHHHH
Confidence            3455677788888888  99999999999999999999753

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.20  E-value=4.7e-11  Score=91.76  Aligned_cols=139  Identities=19%  Similarity=0.136  Sum_probs=77.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeC--CcEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+++|.+|||||||+|.|++......    ...|............  ...+.++||||.....        .+.   
T Consensus         9 ~ki~vvG~~~~GKSsli~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~~---   73 (199)
T 2gf0_A            9 YRVVVFGAGGVGKSSLVLRFVKGTFRDT----YIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFP--------AMQ---   73 (199)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSCCCCT----TSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCH--------HHH---
T ss_pred             eEEEEECCCCCcHHHHHHHHHcCCCCCc----ccCccccceeEEEEECCEEEEEEEEeCCChHHhH--------HHH---
Confidence            7999999999999999999998654211    1111111111111112  2367899999966421        111   


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH--------hc---CCCCcHHHHHHHHHhh--------HHHHHhhcc-chhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------AN---GGQPYTDEFLAELKRG--------ATELRDQQA-EVDSLKE  161 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~~---~~~~~~~~~~~~~~~~--------~~~l~~~~~-~i~~is~  161 (231)
                      ...+..+|++++|+|+++..+.....        ..   ...|++ .+.++.|..        ...+..... +++.+|+
T Consensus        74 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa  152 (199)
T 2gf0_A           74 RLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVM-LVGNKCDETQREVDTREAQAVAQEWKCAFMETSA  152 (199)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEE-EEEECTTCSSCSSCHHHHHHHHHHHTCEEEECBT
T ss_pred             HHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECccCCccccCHHHHHHHHHHhCCeEEEEec
Confidence            11224569999999998422211110        10   123332 233333310        012222222 5777899


Q ss_pred             hhHhhHHHHHHHHHHHH
Q 038053          162 YSKQEISKLMGQMQESY  178 (231)
Q Consensus       162 ~~~~~i~~l~~~i~~~~  178 (231)
                      ++|.|+++++..+...+
T Consensus       153 ~~~~gi~~l~~~l~~~~  169 (199)
T 2gf0_A          153 KMNYNVKELFQELLTLE  169 (199)
T ss_dssp             TTTBSHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            99999999998887654

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.20  E-value=2.6e-11  Score=107.17  Aligned_cols=92  Identities=16%  Similarity=0.230  Sum_probs=62.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccc--c------------------cCCCCcceeeeeeeEEeeCCcEEEEEeCCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKA--S------------------ADSSGVTKTCEMKTTVLKDGQVVNVIDTPGL   83 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~--~------------------~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~   83 (231)
                      .+|+|+|++|||||||+|.|++......  +                  ....++|.........+ .+..+.++||||.
T Consensus        14 r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~liDTPG~   92 (528)
T 3tr5_A           14 RTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPY-KDYLINLLDTPGH   92 (528)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEE-TTEEEEEECCCCS
T ss_pred             CEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEe-CCEEEEEEECCCc
Confidence            7999999999999999999962211100  0                  00123444444444555 7788999999998


Q ss_pred             cCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH
Q 038053           84 FDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA  127 (231)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~  127 (231)
                      .+..           ......+..+|++++|+|++++.......
T Consensus        93 ~df~-----------~~~~~~l~~aD~allVvDa~~g~~~~t~~  125 (528)
T 3tr5_A           93 ADFT-----------EDTYRTLTAVDSALMVIDAAKGVEPRTIK  125 (528)
T ss_dssp             TTCC-----------HHHHHGGGGCSEEEEEEETTTCSCHHHHH
T ss_pred             hhHH-----------HHHHHHHHhCCEEEEEEeCCCCCCHHHHH
Confidence            7632           11233456789999999999877776654

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.20  E-value=2.1e-10  Score=98.45  Aligned_cols=118  Identities=16%  Similarity=0.207  Sum_probs=58.9

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccC----CCCcceeee-eeeEEeeC--Cc
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASAD----SSGVTKTCE-MKTTVLKD--GQ   73 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~----~~~~t~~~~-~~~~~~~~--~~   73 (231)
                      +++.|++..++++++|.        |+|+|+||||||||+|+|+|...+..+..    ....|.... ........  ..
T Consensus        17 l~~~y~~~~vl~~vsf~--------I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~   88 (418)
T 2qag_C           17 LPNQVYRKSVKRGFEFT--------LMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQL   88 (418)
T ss_dssp             CCCCTTTTTCC-CCCEE--------EEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CE
T ss_pred             cceeECCEEEecCCCEE--------EEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCccc
Confidence            35677777777776654        59999999999999999999875322110    001111111 11111101  23


Q ss_pred             EEEEEeCCCCcCCCCC---chHHHHHHHHHHh----------hh-c--CCccEEEEEEECC-CCCCHHHH
Q 038053           74 VVNVIDTPGLFDSSAG---SEFVGKEIVKRIG----------LA-K--GGIHAVLVVFSVR-SRFSQEEE  126 (231)
Q Consensus        74 ~~~l~Dtpg~~~~~~~---~~~~~~~~~~~~~----------~~-~--~~~~~il~vvd~~-~~~~~~~~  126 (231)
                      .+.++||||+......   ...+...+...+.          .+ +  +.+|+++++++++ ..++..+.
T Consensus        89 ~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~  158 (418)
T 2qag_C           89 LLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI  158 (418)
T ss_dssp             EEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH
T ss_pred             ceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH
Confidence            5789999998753211   0111111111111          11 1  3466788888886 57888774

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.20  E-value=2.6e-11  Score=91.62  Aligned_cols=133  Identities=18%  Similarity=0.184  Sum_probs=78.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+++|.+|||||||+|.+++.......+ ..+   ......... .+  ..+.++||||...            ..+ 
T Consensus         8 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~-t~~---~~~~~~~~~-~~~~~~l~i~Dt~G~~~------------~~~-   69 (178)
T 2iwr_A            8 LRLGVLGDARSGKSSLIHRFLTGSYQVLEK-TES---EQYKKEMLV-DGQTHLVLIREEAGAPD------------AKF-   69 (178)
T ss_dssp             EEEEEECCGGGCHHHHHHHHHHSCCCCCSS-CSS---SEEEEEEEE-TTEEEEEEEEECSSSCC------------HHH-
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCcCC-Ccc---eeEEEEEEE-CCEEEEEEEEECCCCch------------hHH-
Confidence            799999999999999999999875422111 111   111112222 33  3567899999653            111 


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH---------hc---CCCCcHHHHHHHHHh-----------hHHHHHhhc--cch
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA---------AN---GGQPYTDEFLAELKR-----------GATELRDQQ--AEV  156 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~---------~~---~~~~~~~~~~~~~~~-----------~~~~l~~~~--~~i  156 (231)
                         +..+|++++|+|+++..+.....         ..   ...|++ .+.++.|.           +...+....  .++
T Consensus        70 ---~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~  145 (178)
T 2iwr_A           70 ---SGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALA-LVGTQDRISASSPRVVGDARARALXADMKRCSY  145 (178)
T ss_dssp             ---HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEE-EEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEE
T ss_pred             ---HHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECccccccccCcCCHHHHHHHHHhhcCCeE
Confidence               23469999999998543322211         11   123333 33344332           001222222  267


Q ss_pred             hhhhhhhHhhHHHHHHHHHHHH
Q 038053          157 DSLKEYSKQEISKLMGQMQESY  178 (231)
Q Consensus       157 ~~is~~~~~~i~~l~~~i~~~~  178 (231)
                      +.+||++|.|+++++..+....
T Consensus       146 ~~~Sa~~~~~i~~lf~~l~~~~  167 (178)
T 2iwr_A          146 YETXATYGLNVDRVFQEVAQKV  167 (178)
T ss_dssp             EEEBTTTTBTHHHHHHHHHHHH
T ss_pred             EEEeccccCCHHHHHHHHHHHH
Confidence            7899999999999988877654

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.20  E-value=1e-12  Score=106.64  Aligned_cols=85  Identities=13%  Similarity=0.157  Sum_probs=57.8

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCC--ccccccCCCCcceeeeee-eE---EeeCCcEE
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRK--AFKASADSSGVTKTCEMK-TT---VLKDGQVV   75 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~--~~~~~~~~~~~t~~~~~~-~~---~~~~~~~~   75 (231)
                      ++.|+++.++++++|++++|  .+++|+|+||||||||+++|+|..  .+.    .|.+....... ..   ........
T Consensus        27 ~~~y~~~~vl~~vsl~i~~G--e~~~l~G~NGsGKSTLlk~l~Gl~~~~p~----~G~I~~~g~~i~~~~~~~~~~~~i~  100 (267)
T 2zu0_C           27 HVSVEDKAILRGLSLDVHPG--EVHAIMGPNGSGKSTLSATLAGREDYEVT----GGTVEFKGKDLLALSPEDRAGEGIF  100 (267)
T ss_dssp             EEEETTEEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHHTCTTCEEE----EEEEEETTEEGGGSCHHHHHHHTEE
T ss_pred             EEEECCEEEEEeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCC----CeEEEECCEECCcCCHHHHhhCCEE
Confidence            56788888999999999999  999999999999999999999984  322    22222211100 00   00011256


Q ss_pred             EEEeCCCCcCCCCCchH
Q 038053           76 NVIDTPGLFDSSAGSEF   92 (231)
Q Consensus        76 ~l~Dtpg~~~~~~~~~~   92 (231)
                      ++++.|.+++..++.+.
T Consensus       101 ~v~Q~~~l~~~~tv~e~  117 (267)
T 2zu0_C          101 MAFQYPVEIPGVSNQFF  117 (267)
T ss_dssp             EECSSCCCCTTCBHHHH
T ss_pred             EEccCccccccccHHHH
Confidence            78898888776554443

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=99.19  E-value=1.1e-12  Score=110.13  Aligned_cols=87  Identities=17%  Similarity=0.093  Sum_probs=63.0

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-EEeeCCcEEEEEe
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-TVLKDGQVVNVID   79 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~D   79 (231)
                      +++.|++. ++++++|++++|  ..++|+|+||||||||+++|+|...+..    |.+........ .........++++
T Consensus         7 l~~~y~~~-~l~~vsl~i~~G--e~~~llGpnGsGKSTLLr~iaGl~~p~~----G~I~~~g~~i~~~~~~~r~ig~v~Q   79 (348)
T 3d31_A            7 LSRKWKNF-SLDNLSLKVESG--EYFVILGPTGAGKTLFLELIAGFHVPDS----GRILLDGKDVTDLSPEKHDIAFVYQ   79 (348)
T ss_dssp             EEEECSSC-EEEEEEEEECTT--CEEEEECCCTHHHHHHHHHHHTSSCCSE----EEEEETTEECTTSCHHHHTCEEECT
T ss_pred             EEEEECCE-EEeeeEEEEcCC--CEEEEECCCCccHHHHHHHHHcCCCCCC----cEEEECCEECCCCchhhCcEEEEec
Confidence            36788887 999999999999  9999999999999999999999987433    32222111100 0000234678999


Q ss_pred             CCCCcCCCCCchHHH
Q 038053           80 TPGLFDSSAGSEFVG   94 (231)
Q Consensus        80 tpg~~~~~~~~~~~~   94 (231)
                      .+.+++..++.+++.
T Consensus        80 ~~~l~~~ltv~enl~   94 (348)
T 3d31_A           80 NYSLFPHMNVKKNLE   94 (348)
T ss_dssp             TCCCCTTSCHHHHHH
T ss_pred             CcccCCCCCHHHHHH
Confidence            999998777666553

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.19  E-value=3.3e-11  Score=91.22  Aligned_cols=139  Identities=17%  Similarity=0.101  Sum_probs=74.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEe-eCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      .+|+++|.+|+|||||+|.+++.....   ...+++.......... .....+.++||||......           ...
T Consensus         9 ~ki~v~G~~~~GKssl~~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~~~   74 (182)
T 3bwd_D            9 IKCVTVGDGAVGKTCLLISYTSNTFPT---DYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNR-----------LRP   74 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSCCC-------------CBCCCC-------CEEECCCC-CTTTT-----------TGG
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCC---CCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhh-----------hHH
Confidence            799999999999999999999765311   1111111111111111 0233456999999754221           122


Q ss_pred             hhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhh-------------------HHHHHhhcc
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRG-------------------ATELRDQQA  154 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~-------------------~~~l~~~~~  154 (231)
                      ..+..+|++++|+|+++..+.....         .....|++ .+.++.|..                   ...+....+
T Consensus        75 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  153 (182)
T 3bwd_D           75 LSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIV-LVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIG  153 (182)
T ss_dssp             GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEE-EEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHT
T ss_pred             hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE-EEEechhhhcCcccccccccCCCCCHHHHHHHHHHcC
Confidence            3457789999999998533222211         11234443 222332210                   012222222


Q ss_pred             --chhhhhhhhHhhHHHHHHHHHHH
Q 038053          155 --EVDSLKEYSKQEISKLMGQMQES  177 (231)
Q Consensus       155 --~i~~is~~~~~~i~~l~~~i~~~  177 (231)
                        +++.+|+++|.|+++++..+...
T Consensus       154 ~~~~~~~Sa~~~~gi~~l~~~l~~~  178 (182)
T 3bwd_D          154 APAYIECSSKSQENVKGVFDAAIRV  178 (182)
T ss_dssp             CSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence              56779999999999998887653

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.19  E-value=1.1e-10  Score=96.36  Aligned_cols=169  Identities=14%  Similarity=0.138  Sum_probs=61.0

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCC-CccccccCCC----Ccceeee-eeeEEe--eCC
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGR-KAFKASADSS----GVTKTCE-MKTTVL--KDG   72 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~-~~~~~~~~~~----~~t~~~~-~~~~~~--~~~   72 (231)
                      +++.|+++.++++++|        .|+|+|+||||||||+|+|+|. ..+..+....    ..|.... ......  ...
T Consensus         4 l~~~~~~~~~l~~~~~--------~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~   75 (301)
T 2qnr_A            4 LPNQVHRKSVKKGFEF--------TLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVK   75 (301)
T ss_dssp             --------------CE--------EEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CC
T ss_pred             CcceECCEEEEcCCCE--------EEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcc
Confidence            4678888888887665        5599999999999999999997 3322210000    0111111 111111  113


Q ss_pred             cEEEEEeCCCCcCCCC---CchHHHHHH----HHHHhhh---------cCCccEEEEEEECCC-CCCHHHHH----hcCC
Q 038053           73 QVVNVIDTPGLFDSSA---GSEFVGKEI----VKRIGLA---------KGGIHAVLVVFSVRS-RFSQEEEA----ANGG  131 (231)
Q Consensus        73 ~~~~l~Dtpg~~~~~~---~~~~~~~~~----~~~~~~~---------~~~~~~il~vvd~~~-~~~~~~~~----~~~~  131 (231)
                      ..+.+.||||+.....   ....+...+    ...+...         ..++++++++++++. .++..+..    ....
T Consensus        76 ~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~~~  155 (301)
T 2qnr_A           76 LRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIHNK  155 (301)
T ss_dssp             EEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHTTT
T ss_pred             cCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHHhc
Confidence            4678999999853210   011111111    1222211         134567888888754 47776643    1111


Q ss_pred             CCcH-----HHHHHHHHhh--HHHHHhh---cc-chhhhhhhhHhhHHHHHHHHHHHH
Q 038053          132 QPYT-----DEFLAELKRG--ATELRDQ---QA-EVDSLKEYSKQEISKLMGQMQESY  178 (231)
Q Consensus       132 ~~~~-----~~~~~~~~~~--~~~l~~~---~~-~i~~is~~~~~~i~~l~~~i~~~~  178 (231)
                      .+.+     .++.+..+..  .+.+.+.   .+ +++.+|++++ ++++++..+....
T Consensus       156 ~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i  212 (301)
T 2qnr_A          156 VNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLL  212 (301)
T ss_dssp             SCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHh
Confidence            1222     1121110000  0111111   12 6777899999 9998877666544

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.19  E-value=8.1e-11  Score=91.58  Aligned_cols=139  Identities=19%  Similarity=0.118  Sum_probs=81.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+++|.+|+|||||+|.+++.....   ...+++.......... .+  ..+.++||||.......           .
T Consensus        10 ~ki~i~G~~~~GKTsli~~l~~~~~~~---~~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~-----------~   74 (212)
T 2j0v_A           10 IKCVTVGDGAVGKTCMLICYTSNKFPT---DYIPTVFDNFSANVAV-DGQIVNLGLWDTAGQEDYSRL-----------R   74 (212)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCS---SCCCSSCCCEEEEEEC-SSCEEEEEEECCCCCCCCCC-------------
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCc---cCCCccceeEEEEEEE-CCEEEEEEEEECCCcHHHHHH-----------H
Confidence            799999999999999999999765311   1111111111111222 22  47789999998653211           1


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHh-----------------hHHHHHhhcc-
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKR-----------------GATELRDQQA-  154 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~-  154 (231)
                      ...+..+|++++|+|+++..+.....         .....|++ .+.++.|.                 +...+....+ 
T Consensus        75 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~  153 (212)
T 2j0v_A           75 PLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIV-LVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGA  153 (212)
T ss_dssp             CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEE-EEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTC
T ss_pred             HhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE-EEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCC
Confidence            23457889999999998533222211         11234443 22233221                 0012222222 


Q ss_pred             -chhhhhhhhHhhHHHHHHHHHHHH
Q 038053          155 -EVDSLKEYSKQEISKLMGQMQESY  178 (231)
Q Consensus       155 -~i~~is~~~~~~i~~l~~~i~~~~  178 (231)
                       +++.+|+++|.|+++++..+....
T Consensus       154 ~~~~~~Sa~~g~gi~~l~~~l~~~~  178 (212)
T 2j0v_A          154 AAYIECSSKTQQNVKAVFDTAIKVV  178 (212)
T ss_dssp             SEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ceEEEccCCCCCCHHHHHHHHHHHH
Confidence             677799999999999988877654

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.19  E-value=1.7e-11  Score=94.83  Aligned_cols=139  Identities=14%  Similarity=0.109  Sum_probs=79.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHH
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKR  100 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~  100 (231)
                      ..+|+++|.+|+|||||+|.+++......  ..+.++.... ..... .+  ..+.++||||......           .
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~-~~~~~-~~~~~~l~i~Dt~G~~~~~~-----------~   89 (201)
T 2gco_A           25 RKKLVIVGDGACGKTCLLIVFSKDQFPEV--YVPTVFENYI-ADIEV-DGKQVELALWDTAGQEDYDR-----------L   89 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSS--CCCSSCCCCE-EEEEE-TTEEEEEEEECCCCSGGGTT-----------T
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCcCCcc--cCCcccceEE-EEEEE-CCEEEEEEEEECCCchhHHH-----------H
Confidence            36899999999999999999998764211  1121111111 11222 33  3678899999653211           1


Q ss_pred             HhhhcCCccEEEEEEECCCCCCHHHH-H--------hcCCCCcHHHHHHHHHhhH---------------------HHHH
Q 038053          101 IGLAKGGIHAVLVVFSVRSRFSQEEE-A--------ANGGQPYTDEFLAELKRGA---------------------TELR  150 (231)
Q Consensus       101 ~~~~~~~~~~il~vvd~~~~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~---------------------~~l~  150 (231)
                      ....+..+|++++|+|+++..+.... .        .....|++ .+.++.|...                     ..+.
T Consensus        90 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~  168 (201)
T 2gco_A           90 RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII-LVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMA  168 (201)
T ss_dssp             GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEE-EEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHH
T ss_pred             HHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE-EEEecHHhhcCccchhhhcccccCcCCHHHHHHHH
Confidence            12345788999999999853222221 1        11233433 2333333100                     0111


Q ss_pred             hhcc--chhhhhhhhHhhHHHHHHHHHHH
Q 038053          151 DQQA--EVDSLKEYSKQEISKLMGQMQES  177 (231)
Q Consensus       151 ~~~~--~i~~is~~~~~~i~~l~~~i~~~  177 (231)
                      ...+  +++.+|+++|.|+++++..+.+.
T Consensus       169 ~~~~~~~~~~~SA~~g~gi~~l~~~i~~~  197 (201)
T 2gco_A          169 NRISAFGYLECSAKTKEGVREVFEMATRA  197 (201)
T ss_dssp             HHTTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             HhCCCcEEEEeeCCCCCCHHHHHHHHHHH
Confidence            1111  56778999999999998887664

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.19  E-value=1.6e-10  Score=97.38  Aligned_cols=95  Identities=13%  Similarity=0.072  Sum_probs=55.1

Q ss_pred             CCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHHh-cCCCCcHHHHHHHHHhh----
Q 038053           71 DGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEAA-NGGQPYTDEFLAELKRG----  145 (231)
Q Consensus        71 ~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----  145 (231)
                      .+..+.++||||+...       ..       .....+|.+++|+|+...-....... ....+.+ .++|++|..    
T Consensus       170 ~~~~~iiiDTpGi~~~-------~~-------~~~~~aD~vl~V~d~~~~~~~~~l~~~~~~~p~i-vVlNK~Dl~~~~~  234 (355)
T 3p32_A          170 AGFDVILIETVGVGQS-------EV-------AVANMVDTFVLLTLARTGDQLQGIKKGVLELADI-VVVNKADGEHHKE  234 (355)
T ss_dssp             TTCCEEEEEECSCSSH-------HH-------HHHTTCSEEEEEEESSTTCTTTTCCTTSGGGCSE-EEEECCCGGGHHH
T ss_pred             CCCCEEEEeCCCCCcH-------HH-------HHHHhCCEEEEEECCCCCccHHHHHHhHhhcCCE-EEEECCCCcChhH
Confidence            4577899999997651       11       11267899999999863221111000 0001221 223333211    


Q ss_pred             ----HHHHHhh-----------ccchhhhhhhhHhhHHHHHHHHHHHHHH
Q 038053          146 ----ATELRDQ-----------QAEVDSLKEYSKQEISKLMGQMQESYED  180 (231)
Q Consensus       146 ----~~~l~~~-----------~~~i~~is~~~~~~i~~l~~~i~~~~~~  180 (231)
                          ...+...           ..+++.+|+++|.|+++++..+.+.+..
T Consensus       235 ~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          235 ARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             HHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence                0123322           1368889999999999999999887654

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.19  E-value=1.6e-12  Score=105.45  Aligned_cols=47  Identities=17%  Similarity=0.126  Sum_probs=41.7

Q ss_pred             CCCCC--C---cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccc
Q 038053            2 SSGMG--E---RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFK   50 (231)
Q Consensus         2 ~~~~~--~---~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~   50 (231)
                      ++.|+  +   ..++++++|++++|  .+++|+|+||||||||+++|+|...+.
T Consensus         9 ~~~y~~~~~~~~~vl~~vsl~i~~G--e~~~liG~nGsGKSTLl~~i~Gl~~p~   60 (266)
T 2yz2_A            9 SHIFHRGTPLEKKALENVSLVINEG--ECLLVAGNTGSGKSTLLQIVAGLIEPT   60 (266)
T ss_dssp             EEEESTTSTTCEEEEEEEEEEECTT--CEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred             EEEecCCCccccceeeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence            45665  4   57999999999999  999999999999999999999998743

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.18  E-value=1.9e-10  Score=97.07  Aligned_cols=103  Identities=18%  Similarity=0.183  Sum_probs=61.9

Q ss_pred             ccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeee-------------------------
Q 038053            9 VIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCE-------------------------   63 (231)
Q Consensus         9 ~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~-------------------------   63 (231)
                      .+++++++.++     .|++||.+|||||||+|+|+|......  ..+.+|..+.                         
T Consensus        25 ~~l~~i~~~lp-----~I~vvG~~~sGKSSLln~l~g~~~lp~--~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~   97 (360)
T 3t34_A           25 SALPTLWDSLP-----AIAVVGGQSSGKSSVLESIVGKDFLPR--GSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKF   97 (360)
T ss_dssp             CCC----CCCC-----EEEEECBTTSSHHHHHHHHHTSCCSCC--CSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCB
T ss_pred             cccccccccCC-----EEEEECCCCCcHHHHHHHHhCCCcCCC--CCCcccCcceEEEEecCCCcccceeeeecCCCccc
Confidence            46777777776     799999999999999999999764222  1222221100                         


Q ss_pred             -----------------------------eeeEEeeCCcEEEEEeCCCCcCCCCC--chHHHHHHHHHHhhhcCCccEEE
Q 038053           64 -----------------------------MKTTVLKDGQVVNVIDTPGLFDSSAG--SEFVGKEIVKRIGLAKGGIHAVL  112 (231)
Q Consensus        64 -----------------------------~~~~~~~~~~~~~l~Dtpg~~~~~~~--~~~~~~~~~~~~~~~~~~~~~il  112 (231)
                                                   ...........+.++||||+......  .......+...+...+..+|+++
T Consensus        98 ~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~ii  177 (360)
T 3t34_A           98 TDFAAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCII  177 (360)
T ss_dssp             SCHHHHHHHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEE
T ss_pred             CCHHHHHHHHHHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEE
Confidence                                         00001112346789999999864321  22344455555555567899999


Q ss_pred             EEEECC
Q 038053          113 VVFSVR  118 (231)
Q Consensus       113 ~vvd~~  118 (231)
                      +++++.
T Consensus       178 lvv~~~  183 (360)
T 3t34_A          178 LAISPA  183 (360)
T ss_dssp             EEEEET
T ss_pred             EEeecc
Confidence            999864

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.18  E-value=1.1e-10  Score=100.19  Aligned_cols=142  Identities=11%  Similarity=0.178  Sum_probs=78.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCccccc-cCCCCcceeeeeeeEEee--------------C--------CcEEEEEe
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKAFKAS-ADSSGVTKTCEMKTTVLK--------------D--------GQVVNVID   79 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~-~~~~~~t~~~~~~~~~~~--------------~--------~~~~~l~D   79 (231)
                      ..+|+++|..|+|||||++.|+|....... ....++|....+......              .        ...+.++|
T Consensus         8 ~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiD   87 (408)
T 1s0u_A            8 EVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVD   87 (408)
T ss_dssp             CEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEEE
T ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEEE
Confidence            379999999999999999999986432110 123445554332221110              0        15788999


Q ss_pred             CCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCC-CHHHHH------hcCCCCcHHHHHHHHHhh-------
Q 038053           80 TPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRF-SQEEEA------ANGGQPYTDEFLAELKRG-------  145 (231)
Q Consensus        80 tpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~-------  145 (231)
                      |||..           .+...+......+|.+++|+|+++++ ..+...      .....+++ .++|++|..       
T Consensus        88 tPGh~-----------~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~ii-vv~NK~Dl~~~~~~~~  155 (408)
T 1s0u_A           88 SPGHE-----------TLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKII-IVQNKIDLVDEKQAEE  155 (408)
T ss_dssp             CSSHH-----------HHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEE-EEEECTTSSCTTTTTT
T ss_pred             CCCHH-----------HHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEE-EEEEccCCCCHHHHHH
Confidence            99943           23334444557889999999998765 433322      12222332 333443310       


Q ss_pred             -HHHHHhhc-------cchhhhhhhhHhhHHHHHHHHHH
Q 038053          146 -ATELRDQQ-------AEVDSLKEYSKQEISKLMGQMQE  176 (231)
Q Consensus       146 -~~~l~~~~-------~~i~~is~~~~~~i~~l~~~i~~  176 (231)
                       .+++.+.+       .+++++|+++|.|++.|++.+..
T Consensus       156 ~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~  194 (408)
T 1s0u_A          156 NYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQD  194 (408)
T ss_dssp             HHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHH
Confidence             02232222       16788999999999988887765

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.17  E-value=7e-11  Score=89.98  Aligned_cols=139  Identities=12%  Similarity=0.029  Sum_probs=79.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeee-eeEEe-eCCcEEEEEeCCCCcCCCCCchHHHHHHHHH
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEM-KTTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKR  100 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~-~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~  100 (231)
                      ..+|+++|.+|+|||||+|.+++....    .....|..... ..... .....+.++||||......           .
T Consensus         7 ~~ki~v~G~~~vGKSsli~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~   71 (184)
T 1m7b_A            7 KCKIVVVGDSQCGKTALLHVFAKDCFP----ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDN-----------V   71 (184)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCC----SSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTT-----------T
T ss_pred             EEEEEEECCCCCCHHHHHHHHhcCCCC----CCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhh-----------h
Confidence            378999999999999999999986542    11111211111 11121 1234678999999754211           1


Q ss_pred             HhhhcCCccEEEEEEECCCCCCHHHH-H--------hcCCCCcHHHHHHHHHhh---------------------HHHHH
Q 038053          101 IGLAKGGIHAVLVVFSVRSRFSQEEE-A--------ANGGQPYTDEFLAELKRG---------------------ATELR  150 (231)
Q Consensus       101 ~~~~~~~~~~il~vvd~~~~~~~~~~-~--------~~~~~~~~~~~~~~~~~~---------------------~~~l~  150 (231)
                      ....+..+|++++|+|+++..+.... .        .....|++ .+.++.|..                     ...+.
T Consensus        72 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~  150 (184)
T 1m7b_A           72 RPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKML-LVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMA  150 (184)
T ss_dssp             GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEE-EEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHH
T ss_pred             HHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEE-EEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHH
Confidence            12345788999999999854332222 1        11233333 222332210                     01222


Q ss_pred             hhcc--chhhhhhh-hHhhHHHHHHHHHHH
Q 038053          151 DQQA--EVDSLKEY-SKQEISKLMGQMQES  177 (231)
Q Consensus       151 ~~~~--~i~~is~~-~~~~i~~l~~~i~~~  177 (231)
                      ...+  +++.+|++ ++.|+++++..+.+.
T Consensus       151 ~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~  180 (184)
T 1m7b_A          151 KQIGAATYIECSALQSENSVRDIFHVATLA  180 (184)
T ss_dssp             HHHTCSEEEECBTTTBHHHHHHHHHHHHHH
T ss_pred             HHcCCcEEEEeeecCCCcCHHHHHHHHHHH
Confidence            2222  56778998 689999998887653

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.15  E-value=1.8e-10  Score=88.00  Aligned_cols=136  Identities=16%  Similarity=0.123  Sum_probs=79.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHH
Q 038053           22 GKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVK   99 (231)
Q Consensus        22 ~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~   99 (231)
                      ...+|+|+|.+|||||||+|.+++.....    ....|.......... .+  ..+.++||||....        .    
T Consensus        19 ~~~ki~ivG~~~vGKSsL~~~~~~~~~~~----~~~~t~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~--------~----   81 (184)
T 3ihw_A           19 PELKVGIVGNLSSGKSALVHRYLTGTYVQ----EESPEGGRFKKEIVV-DGQSYLLLIRDEGGPPEL--------Q----   81 (184)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHHSSCCC----CCCTTCEEEEEEEEE-TTEEEEEEEEECSSSCCH--------H----
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCCCCC----CcCCCcceEEEEEEE-CCEEEEEEEEECCCChhh--------h----
Confidence            34799999999999999999888765321    111122211122222 44  34567999997641        0    


Q ss_pred             HHhhhcCCccEEEEEEECCCCCCHHHHH------hc----CCCCcHHHHHHHHHh-----------hHHHHHhhc--cch
Q 038053          100 RIGLAKGGIHAVLVVFSVRSRFSQEEEA------AN----GGQPYTDEFLAELKR-----------GATELRDQQ--AEV  156 (231)
Q Consensus       100 ~~~~~~~~~~~il~vvd~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~-----------~~~~l~~~~--~~i  156 (231)
                      +    +..+|++++|+|+++..+..+..      ..    ...|++ .+.++.|.           ....+....  .++
T Consensus        82 ~----~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~  156 (184)
T 3ihw_A           82 F----AAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMV-LVGTQDAISAANPRVIDDSRARKLSTDLKRCTY  156 (184)
T ss_dssp             H----HHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEE-EEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEE
T ss_pred             e----ecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECcccccccccccCHHHHHHHHHHcCCCeE
Confidence            2    23469999999998543322211      11    122332 23333331           001233333  256


Q ss_pred             hhhhhhhHhhHHHHHHHHHHHHH
Q 038053          157 DSLKEYSKQEISKLMGQMQESYE  179 (231)
Q Consensus       157 ~~is~~~~~~i~~l~~~i~~~~~  179 (231)
                      +.+|+++|.|+++++..+.....
T Consensus       157 ~e~Sa~~~~gv~~lf~~l~~~i~  179 (184)
T 3ihw_A          157 YETCATYGLNVERVFQDVAQKVV  179 (184)
T ss_dssp             EEEBTTTTBTHHHHHHHHHHHHH
T ss_pred             EEecCCCCCCHHHHHHHHHHHHH
Confidence            77899999999999988876543

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.15  E-value=8.7e-13  Score=102.00  Aligned_cols=140  Identities=17%  Similarity=0.136  Sum_probs=78.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHH
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKR  100 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~  100 (231)
                      ..+|+|+|.+|||||||+|.|++......  ..++.+.+........ .+  ..+.++||||.......           
T Consensus        33 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~-----------   98 (199)
T 3l0i_B           33 LFKLLLIGDSGVGKSCLLLRFADDTYTES--YISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTI-----------   98 (199)
T ss_dssp             EEEEEEECCTTSCCTTTTTSSBCCCCCCH--HHHHHCCSEEEEEEEE-TTEEEEEEEECCTTCTTCCCC-----------
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCC--cCCcccceEEEEEEEE-CCEEEEEEEEECCCcHhHHHH-----------
Confidence            37999999999999999999998754221  1122222223333333 33  46789999996543221           


Q ss_pred             HhhhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhhH---------HHHHhhcc-chhhhhh
Q 038053          101 IGLAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRGA---------TELRDQQA-EVDSLKE  161 (231)
Q Consensus       101 ~~~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~---------~~l~~~~~-~i~~is~  161 (231)
                      ....+..+|++++|+|+++..+.....         .....|++ .+.++.|...         ..+..... +++.+|+
T Consensus        99 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i-lv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA  177 (199)
T 3l0i_B           99 TSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKL-LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSA  177 (199)
T ss_dssp             SCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEE-EC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC
T ss_pred             HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEE-EEEECccCCccccCCHHHHHHHHHHcCCeEEEEEC
Confidence            112346789999999998543322221         11123333 3445544211         12222222 6778999


Q ss_pred             hhHhhHHHHHHHHHHH
Q 038053          162 YSKQEISKLMGQMQES  177 (231)
Q Consensus       162 ~~~~~i~~l~~~i~~~  177 (231)
                      +++.|+++++..+.+.
T Consensus       178 ~~g~gv~~l~~~l~~~  193 (199)
T 3l0i_B          178 KNATNVEQSFMTMAAE  193 (199)
T ss_dssp             ---HHHHHHHHHHTTT
T ss_pred             CCCCCHHHHHHHHHHH
Confidence            9999999998887653

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.15  E-value=1.5e-12  Score=114.89  Aligned_cols=140  Identities=14%  Similarity=0.191  Sum_probs=92.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      ++|+++|.+|+|||||+|.|++......  ..+++|.+..........+..+.++||||......           ....
T Consensus         5 pkV~IvG~~~vGKTSLl~~L~~~~~~~~--~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~-----------~~~~   71 (537)
T 3izy_P            5 PVVTIMGHVDHGKTTLLDKLRKTQVAAM--EAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSA-----------MRAR   71 (537)
T ss_dssp             CBCEEEESTTTTHHHHHHHHHHHHHHHS--SSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTT-----------SBBS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCcccc--cCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHH-----------HHHH
Confidence            7899999999999999999998764322  34566655444434332455788999999654221           1123


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhhH-------HHHHhh---c------cchhhhhhh
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRGA-------TELRDQ---Q------AEVDSLKEY  162 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-------~~l~~~---~------~~i~~is~~  162 (231)
                      .+..+|.+++|+|++++.......     .....|++ .++|++|...       ..+...   .      .+++++|++
T Consensus        72 ~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiI-VViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAk  150 (537)
T 3izy_P           72 GTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIV-LAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSAL  150 (537)
T ss_dssp             SSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEE-ECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSS
T ss_pred             HHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEE-EEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECC
Confidence            446789999999999877776654     23344543 4556655311       122211   0      167889999


Q ss_pred             hHhhHHHHHHHHHHH
Q 038053          163 SKQEISKLMGQMQES  177 (231)
Q Consensus       163 ~~~~i~~l~~~i~~~  177 (231)
                      +|.|+++|+..+...
T Consensus       151 tG~GI~eLle~I~~l  165 (537)
T 3izy_P          151 TGENMMALAEATIAL  165 (537)
T ss_dssp             SSCSSHHHHHHHHHH
T ss_pred             CCCCchhHHHHHHHh
Confidence            999999998887654

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.15  E-value=1.3e-12  Score=107.84  Aligned_cols=77  Identities=19%  Similarity=0.155  Sum_probs=55.7

Q ss_pred             CCCCC-CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee----EEeeCCcEEE
Q 038053            2 SSGMG-ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT----TVLKDGQVVN   76 (231)
Q Consensus         2 ~~~~~-~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~   76 (231)
                      ++.|+ +..+|++++|++++|  .+++|+|+||||||||+++|+|...+.    .|.+........    ..+ .....+
T Consensus        60 s~~y~~~~~vL~~isl~i~~G--e~vaivG~sGsGKSTLl~ll~gl~~p~----~G~I~i~G~~i~~~~~~~~-r~~i~~  132 (306)
T 3nh6_A           60 HFSYADGRETLQDVSFTVMPG--QTLALVGPSGAGKSTILRLLFRFYDIS----SGCIRIDGQDISQVTQASL-RSHIGV  132 (306)
T ss_dssp             EEESSTTCEEEEEEEEEECTT--CEEEEESSSCHHHHHHHHHHTTSSCCS----EEEEEETTEETTSBCHHHH-HHTEEE
T ss_pred             EEEcCCCCceeeeeeEEEcCC--CEEEEECCCCchHHHHHHHHHcCCCCC----CcEEEECCEEcccCCHHHH-hcceEE
Confidence            45674 578999999999999  999999999999999999999998743    333332211100    001 235778


Q ss_pred             EEeCCCCcC
Q 038053           77 VIDTPGLFD   85 (231)
Q Consensus        77 l~Dtpg~~~   85 (231)
                      +++.|.+++
T Consensus       133 v~Q~~~lf~  141 (306)
T 3nh6_A          133 VPQDTVLFN  141 (306)
T ss_dssp             ECSSCCCCS
T ss_pred             EecCCccCc
Confidence            888888764

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.14  E-value=5.6e-12  Score=102.85  Aligned_cols=48  Identities=15%  Similarity=0.081  Sum_probs=43.8

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcccc
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKA   51 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~   51 (231)
                      ++.|++..++++++|++++|  .+++|+|+||||||||+++|+|...+..
T Consensus        28 ~~~y~~~~vL~~isl~i~~G--e~~~liG~NGsGKSTLlk~l~Gl~~p~~   75 (279)
T 2ihy_A           28 GRMKQGKTILKKISWQIAKG--DKWILYGLNGAGKTTLLNILNAYEPATS   75 (279)
T ss_dssp             EEEETTEEEEEEEEEEEETT--CEEEEECCTTSSHHHHHHHHTTSSCCSE
T ss_pred             EEEECCEEEEEeeeEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCCCC
Confidence            56788888999999999999  9999999999999999999999987433

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.14  E-value=1.7e-10  Score=88.17  Aligned_cols=138  Identities=20%  Similarity=0.195  Sum_probs=77.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+++|.+|||||||+|.+++....   ....+++.......... .+  ..+.++||||......    +    .   
T Consensus        22 ~ki~vvG~~~vGKTsLi~~l~~~~~~---~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~----~----~---   86 (187)
T 3c5c_A           22 VNLAILGRRGAGKSALTVKFLTKRFI---SEYDPNLEDTYSSEETV-DHQPVHLRVMDTADLDTPRN----C----E---   86 (187)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSSCC---SCCCTTCCEEEEEEEEE-TTEEEEEEEEECCC---CCC----T----H---
T ss_pred             EEEEEECCCCCcHHHHHHHHHhCCCC---cccCCCccceeeEEEEE-CCEEEEEEEEECCCCCcchh----H----H---
Confidence            79999999999999999999987531   11111221111111222 32  4567899999764321    1    1   


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH--------h----cCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------A----NGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSL  159 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~----~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~i  159 (231)
                       ..+..+|++++|+|+++.-+.....        .    ....|++ .+.++.|..         ...+....+ +++.+
T Consensus        87 -~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~pii-lv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~  164 (187)
T 3c5c_A           87 -RYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPAL-LLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEV  164 (187)
T ss_dssp             -HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEE-EEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEC
T ss_pred             -HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEE-EEEECcchhhcCccCHHHHHHHHHHcCCcEEEE
Confidence             1235679999999998532222211        1    1344443 333443321         012222222 67789


Q ss_pred             hh-hhHhhHHHHHHHHHHHH
Q 038053          160 KE-YSKQEISKLMGQMQESY  178 (231)
Q Consensus       160 s~-~~~~~i~~l~~~i~~~~  178 (231)
                      |+ +++.|+++++..+....
T Consensus       165 Sa~~~g~gv~~lf~~l~~~i  184 (187)
T 3c5c_A          165 SACLDFEHVQHVFHEAVREA  184 (187)
T ss_dssp             CSSSCSHHHHHHHHHHHHHH
T ss_pred             eecCccccHHHHHHHHHHHH
Confidence            99 89999999988876643

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.14  E-value=1.3e-11  Score=101.19  Aligned_cols=69  Identities=14%  Similarity=0.137  Sum_probs=53.3

Q ss_pred             CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCC
Q 038053            7 ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDS   86 (231)
Q Consensus         7 ~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~   86 (231)
                      ...++++++|++++|  .+++|+|+||||||||+++|+|...+..    |.+.         + .+...++++.|.+++.
T Consensus        50 ~~~vl~~isl~i~~G--e~~~i~G~NGsGKSTLlk~l~Gl~~p~~----G~I~---------~-~g~i~~v~Q~~~l~~~  113 (290)
T 2bbs_A           50 GTPVLKDINFKIERG--QLLAVAGSTGAGKTSLLMMIMGELEPSE----GKIK---------H-SGRISFCSQNSWIMPG  113 (290)
T ss_dssp             CCCSEEEEEEEECTT--CEEEEEESTTSSHHHHHHHHTTSSCEEE----EEEE---------C-CSCEEEECSSCCCCSS
T ss_pred             CceEEEeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCCCC----cEEE---------E-CCEEEEEeCCCccCcc
Confidence            467899999999999  9999999999999999999999987432    2222         1 4456778888877663


Q ss_pred             CCCchH
Q 038053           87 SAGSEF   92 (231)
Q Consensus        87 ~~~~~~   92 (231)
                       ++.++
T Consensus       114 -tv~en  118 (290)
T 2bbs_A          114 -TIKEN  118 (290)
T ss_dssp             -BHHHH
T ss_pred             -cHHHH
Confidence             44333

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.14  E-value=1e-10  Score=90.93  Aligned_cols=139  Identities=12%  Similarity=0.031  Sum_probs=79.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEEe-eCCcEEEEEeCCCCcCCCCCchHHHHHHHHH
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKR  100 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~-~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~  100 (231)
                      ..+|+++|.+|+|||||+|.+++....    .....|...... .... .....+.++||||......           .
T Consensus        28 ~~ki~vvG~~~vGKSsLi~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-----------~   92 (205)
T 1gwn_A           28 KCKIVVVGDSQCGKTALLHVFAKDCFP----ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDN-----------V   92 (205)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCC----SSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTT-----------T
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCC----CCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhH-----------H
Confidence            379999999999999999999987542    111112211111 1221 1234678999999654211           1


Q ss_pred             HhhhcCCccEEEEEEECCCCCCHHHH-H--------hcCCCCcHHHHHHHHHhh---------------------HHHHH
Q 038053          101 IGLAKGGIHAVLVVFSVRSRFSQEEE-A--------ANGGQPYTDEFLAELKRG---------------------ATELR  150 (231)
Q Consensus       101 ~~~~~~~~~~il~vvd~~~~~~~~~~-~--------~~~~~~~~~~~~~~~~~~---------------------~~~l~  150 (231)
                      ....+..+|++++|+|+++..+.... .        .....|++ .+.++.|..                     ...+.
T Consensus        93 ~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~  171 (205)
T 1gwn_A           93 RPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKML-LVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMA  171 (205)
T ss_dssp             GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEE-EEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHH
T ss_pred             HHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEE-EEEechhhccchhhhhhhcccccCCCCHHHHHHHH
Confidence            12345788999999999853332222 1        11223332 222332210                     01222


Q ss_pred             hhcc--chhhhhhh-hHhhHHHHHHHHHHH
Q 038053          151 DQQA--EVDSLKEY-SKQEISKLMGQMQES  177 (231)
Q Consensus       151 ~~~~--~i~~is~~-~~~~i~~l~~~i~~~  177 (231)
                      ...+  +++.+||+ ++.|+++++..+.+.
T Consensus       172 ~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~  201 (205)
T 1gwn_A          172 KQIGAATYIECSALQSENSVRDIFHVATLA  201 (205)
T ss_dssp             HHHTCSEEEECCTTTCHHHHHHHHHHHHHH
T ss_pred             HHcCCCEEEEeeeccCCcCHHHHHHHHHHH
Confidence            2222  56778998 689999998887664

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.14  E-value=3.8e-10  Score=96.69  Aligned_cols=143  Identities=13%  Similarity=0.150  Sum_probs=80.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCccccc----c---------CCCCcceeeeeeeEE----eeCCcEEEEEeCCCCcC
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKAFKAS----A---------DSSGVTKTCEMKTTV----LKDGQVVNVIDTPGLFD   85 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~----~---------~~~~~t~~~~~~~~~----~~~~~~~~l~Dtpg~~~   85 (231)
                      ..+|+++|.+|+|||||+|+|+|.......    .         .....+.........    ......+.++||||..+
T Consensus         8 ~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~~   87 (403)
T 3sjy_A            8 EVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEV   87 (403)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCGG
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcHH
Confidence            379999999999999999999995431100    0         000000000000000    00226788999999543


Q ss_pred             CCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCC-CHHHHH------hcCCCCcHHHHHHHHHhh--------HHHHH
Q 038053           86 SSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRF-SQEEEA------ANGGQPYTDEFLAELKRG--------ATELR  150 (231)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~--------~~~l~  150 (231)
                                 +.......+..+|++++|+|++++. ......      .....+++ .++|++|..        .+++.
T Consensus        88 -----------~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~ii-vviNK~Dl~~~~~~~~~~~~i~  155 (403)
T 3sjy_A           88 -----------LMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLI-IVQNKVDVVSKEEALSQYRQIK  155 (403)
T ss_dssp             -----------GHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEE-EEEECGGGSCHHHHHHHHHHHH
T ss_pred             -----------HHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEE-EEEECccccchHHHHHHHHHHH
Confidence                       2222233346789999999998765 333322      12223333 233443310        02333


Q ss_pred             hhc-------cchhhhhhhhHhhHHHHHHHHHHH
Q 038053          151 DQQ-------AEVDSLKEYSKQEISKLMGQMQES  177 (231)
Q Consensus       151 ~~~-------~~i~~is~~~~~~i~~l~~~i~~~  177 (231)
                      +.+       .+++++|+++|.|+..|++.+...
T Consensus       156 ~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~  189 (403)
T 3sjy_A          156 QFTKGTWAENVPIIPVSALHKINIDSLIEGIEEY  189 (403)
T ss_dssp             HHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             HHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHh
Confidence            322       167889999999999988887653

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.14  E-value=4.3e-12  Score=102.60  Aligned_cols=77  Identities=16%  Similarity=0.043  Sum_probs=54.1

Q ss_pred             CCCCCC---cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eE--EeeCCcEE
Q 038053            2 SSGMGE---RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TT--VLKDGQVV   75 (231)
Q Consensus         2 ~~~~~~---~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~--~~~~~~~~   75 (231)
                      ++.|++   ..++++++|++++|  .+++|+|+||||||||+++|+|...+ .    |.+....... ..  ........
T Consensus        24 ~~~y~~~~~~~vl~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~-~----G~I~i~g~~i~~~~~~~~~~~i~   96 (260)
T 2ghi_A           24 NFSYPKQTNHRTLKSINFFIPSG--TTCALVGHTGSGKSTIAKLLYRFYDA-E----GDIKIGGKNVNKYNRNSIRSIIG   96 (260)
T ss_dssp             EECCTTCCSSCSEEEEEEEECTT--CEEEEECSTTSSHHHHHHHHTTSSCC-E----EEEEETTEEGGGBCHHHHHTTEE
T ss_pred             EEEeCCCCcCceeEeeEEEECCC--CEEEEECCCCCCHHHHHHHHhccCCC-C----eEEEECCEEhhhcCHHHHhccEE
Confidence            566765   46999999999999  99999999999999999999998763 2    2222211100 00  00124577


Q ss_pred             EEEeCCCCcC
Q 038053           76 NVIDTPGLFD   85 (231)
Q Consensus        76 ~l~Dtpg~~~   85 (231)
                      ++++.|.+++
T Consensus        97 ~v~Q~~~l~~  106 (260)
T 2ghi_A           97 IVPQDTILFN  106 (260)
T ss_dssp             EECSSCCCCS
T ss_pred             EEcCCCcccc
Confidence            8888887764

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.13  E-value=5.7e-11  Score=101.54  Aligned_cols=90  Identities=14%  Similarity=0.101  Sum_probs=46.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEe--------------------eC---CcEEEEEeCC
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVL--------------------KD---GQVVNVIDTP   81 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~--------------------~~---~~~~~l~Dtp   81 (231)
                      +|+|+|.||+|||||+|+|+|... .. ...+++|.....+....                    ..   ...+.++|||
T Consensus         2 kI~ivG~pnvGKSTL~n~L~~~~~-~~-~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtp   79 (397)
T 1wxq_A            2 EIGVVGKPNVGKSTFFSAATLVDV-EI-ANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA   79 (397)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCC-cc-cCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECC
Confidence            699999999999999999999873 22 24556666554443211                    01   2468899999


Q ss_pred             CCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCC
Q 038053           82 GLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSR  120 (231)
Q Consensus        82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~  120 (231)
                      |+.........    +...+...+..+|++++|+|+++.
T Consensus        80 G~~~~a~~~~~----l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           80 GLVPGAHEGRG----LGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             -------------------CCCSSTTCSEEEEEEETTCC
T ss_pred             Ccccchhhhhh----HHHHHHHHHhcCCEEEEEEecccc
Confidence            98753221111    222223456789999999999853

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.13  E-value=9.5e-10  Score=94.44  Aligned_cols=141  Identities=12%  Similarity=0.183  Sum_probs=84.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccc-cCCCCcceeeeeeeEEeeC----------------------CcEEEEEeC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKAS-ADSSGVTKTCEMKTTVLKD----------------------GQVVNVIDT   80 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~-~~~~~~t~~~~~~~~~~~~----------------------~~~~~l~Dt   80 (231)
                      .+|+++|..|+|||||++.|+|....... ....++|....+....+..                      ...+.++||
T Consensus        11 ~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDt   90 (410)
T 1kk1_A           11 VNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDA   90 (410)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEEC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEEC
Confidence            78999999999999999999986431110 1234555543332221100                      157889999


Q ss_pred             CCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCC-CHHHHH------hcCCCCcHHHHHHHHHhh--------
Q 038053           81 PGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRF-SQEEEA------ANGGQPYTDEFLAELKRG--------  145 (231)
Q Consensus        81 pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~--------  145 (231)
                      ||..           .+...+......+|.+++|+|+++++ ..+...      .....+++ .++|++|..        
T Consensus        91 PGh~-----------~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~ii-vviNK~Dl~~~~~~~~~  158 (410)
T 1kk1_A           91 PGHE-----------ALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNII-IAQNKIELVDKEKALEN  158 (410)
T ss_dssp             SSHH-----------HHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEE-EEEECGGGSCHHHHHHH
T ss_pred             CChH-----------HHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEE-EEEECccCCCHHHHHHH
Confidence            9943           23333344456789999999998765 443332      11222332 233443311        


Q ss_pred             HHHHHhhc-------cchhhhhhhhHhhHHHHHHHHHH
Q 038053          146 ATELRDQQ-------AEVDSLKEYSKQEISKLMGQMQE  176 (231)
Q Consensus       146 ~~~l~~~~-------~~i~~is~~~~~~i~~l~~~i~~  176 (231)
                      .+++.+.+       -+++++|+++|.|+..|++.+..
T Consensus       159 ~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~  196 (410)
T 1kk1_A          159 YRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIED  196 (410)
T ss_dssp             HHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHH
Confidence            02233322       16788999999999988887765

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=99.13  E-value=9e-12  Score=101.37  Aligned_cols=46  Identities=15%  Similarity=0.084  Sum_probs=41.7

Q ss_pred             CCCCCC-cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053            2 SSGMGE-RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF   49 (231)
Q Consensus         2 ~~~~~~-~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~   49 (231)
                      ++.|++ ..++++++|++++|  .+++|+|+||||||||+++|+|...+
T Consensus        14 s~~y~~~~~~L~~isl~i~~G--e~~~iiGpnGsGKSTLl~~l~Gl~~p   60 (275)
T 3gfo_A           14 NYNYSDGTHALKGINMNIKRG--EVTAILGGNGVGKSTLFQNFNGILKP   60 (275)
T ss_dssp             EEECTTSCEEEEEEEEEEETT--SEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             EEEECCCCeEEEeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHcCCCC
Confidence            567864 45999999999999  99999999999999999999999874

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.13  E-value=8.8e-11  Score=99.25  Aligned_cols=90  Identities=22%  Similarity=0.234  Sum_probs=61.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEee--------------------CCcEEEEEeCCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLK--------------------DGQVVNVIDTPGL   83 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--------------------~~~~~~l~Dtpg~   83 (231)
                      .+|+|+|.||+|||||+|+|++.... . ...+.+|..+..+.....                    .+..+.++||||+
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~-v-~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl   79 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANAL-A-ANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL   79 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTT-C-SSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCc-c-cCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence            47999999999999999999987521 1 234445554444333210                    2346889999999


Q ss_pred             cCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCC
Q 038053           84 FDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRS  119 (231)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~  119 (231)
                      .........++..++..+    ..+|++++|+|+.+
T Consensus        80 ~~~a~~~~~lg~~fl~~i----r~ad~ii~VvD~~~  111 (368)
T 2dby_A           80 VKGAHKGEGLGNQFLAHI----REVAAIAHVLRCFP  111 (368)
T ss_dssp             CCCCCSSSCTTHHHHHHH----HTCSEEEEEEECCC
T ss_pred             cccccccchHHHHHHHHH----HhCCEEEEEEECCC
Confidence            876544444444444443    56799999999974

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=98.73  E-value=5.7e-12  Score=97.69  Aligned_cols=139  Identities=13%  Similarity=0.050  Sum_probs=77.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEe-eCCcEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      ..+|+++|.+|+|||||+|.+++.....   ...+++.......... .....+.++||||.....           ...
T Consensus        30 ~~ki~v~G~~~~GKSsli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----------~~~   95 (204)
T 3th5_A           30 AIKCVVVGDGAVGKTCLLISYTTNAFPG---EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYD-----------RLR   95 (204)
Confidence            4899999999999999999999765311   1111111111111111 023345589999965421           112


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH------h---cCCCCcHHHHHHHHHhhH------------------H---HHHh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA------A---NGGQPYTDEFLAELKRGA------------------T---ELRD  151 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~------~---~~~~~~~~~~~~~~~~~~------------------~---~l~~  151 (231)
                      ...+..+|++++|+|+++..+..+..      .   ....|+ +.+.++.|...                  .   .+..
T Consensus        96 ~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~pi-ilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~  174 (204)
T 3th5_A           96 PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK  174 (204)
Confidence            22346789999999987543332221      1   112333 35566655211                  0   0001


Q ss_pred             hcc--chhhhhhhhHhhHHHHHHHHHH
Q 038053          152 QQA--EVDSLKEYSKQEISKLMGQMQE  176 (231)
Q Consensus       152 ~~~--~i~~is~~~~~~i~~l~~~i~~  176 (231)
                      ..+  +++.+||++|.|+++++..+.+
T Consensus       175 ~~~~~~~~~vSA~~g~gi~~l~~~l~~  201 (204)
T 3th5_A          175 EIGAVKYLECSALTQRGLKTVFDEAIR  201 (204)
Confidence            111  5677899999999988877654

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.12  E-value=1.8e-10  Score=88.25  Aligned_cols=138  Identities=13%  Similarity=0.086  Sum_probs=79.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+++|.+|+|||||+|.+++....   ....+++.......... .+  ..+.++||||......           ..
T Consensus        19 ~ki~v~G~~~~GKssli~~l~~~~~~---~~~~~t~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~-----------~~   83 (194)
T 2atx_A           19 LKCVVVGDGAVGKTCLLMSYANDAFP---EEYVPTVFDHYAVSVTV-GGKQYLLGLYDTAGQEDYDR-----------LR   83 (194)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSSCC---CSCCCSSCCCEEEEEES-SSCEEEEEEECCCCSSSSTT-----------TG
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCC---CCCCCcccceeEEEEEE-CCEEEEEEEEECCCCcchhH-----------HH
Confidence            69999999999999999999987431   11122221111112222 33  4678899999765321           11


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHH--H-------hcCCCCcHHHHHHHHHhh---------------------HHHHHh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEE--A-------ANGGQPYTDEFLAELKRG---------------------ATELRD  151 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~--~-------~~~~~~~~~~~~~~~~~~---------------------~~~l~~  151 (231)
                      ...+..+|++++|+|+++..+....  .       .....|++ .+.++.|..                     ...+..
T Consensus        84 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~  162 (194)
T 2atx_A           84 PLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFL-LIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAK  162 (194)
T ss_dssp             GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEE-EEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHH
T ss_pred             HHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE-EEEEChhhcccccchhhcccccCcccCHHHHHHHHH
Confidence            2345788999999999854221111  1       11133333 222222210                     011211


Q ss_pred             hcc--chhhhhhhhHhhHHHHHHHHHHH
Q 038053          152 QQA--EVDSLKEYSKQEISKLMGQMQES  177 (231)
Q Consensus       152 ~~~--~i~~is~~~~~~i~~l~~~i~~~  177 (231)
                      ..+  +++.+|+++|.|+++++..+...
T Consensus       163 ~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  190 (194)
T 2atx_A          163 EIGACCYVECSALTQKGLKTVFDEAIIA  190 (194)
T ss_dssp             HHTCSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred             HcCCcEEEEeeCCCCCCHHHHHHHHHHH
Confidence            122  56778999999999998887653

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.12  E-value=8.1e-10  Score=94.50  Aligned_cols=92  Identities=16%  Similarity=0.165  Sum_probs=61.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccc--------------cCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKAS--------------ADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAG   89 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~--------------~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~   89 (231)
                      .+|+++|.+|+|||||++.|++.......              ....+.|.......... .+..+.++||||..+    
T Consensus         4 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~~~iiDtpG~~~----   78 (397)
T 1d2e_A            4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYST-AARHYAHTDCPGHAD----   78 (397)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEEC-SSCEEEEEECSSHHH----
T ss_pred             EEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEecc-CCeEEEEEECCChHH----
Confidence            78999999999999999999974210000              01234454433322333 567899999999643    


Q ss_pred             chHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH
Q 038053           90 SEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA  127 (231)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~  127 (231)
                             +.......+..+|.+++|+|++++...+...
T Consensus        79 -------f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e  109 (397)
T 1d2e_A           79 -------YVKNMITGTAPLDGCILVVAANDGPMPQTRE  109 (397)
T ss_dssp             -------HHHHHHHTSSCCSEEEEEEETTTCSCHHHHH
T ss_pred             -------HHHHHHhhHhhCCEEEEEEECCCCCCHHHHH
Confidence                   3333444567899999999998776665443

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.12  E-value=2.5e-10  Score=89.33  Aligned_cols=140  Identities=12%  Similarity=0.013  Sum_probs=81.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEEe-eCCcEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~-~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+|+|.+|||||||+|.+++....    .....|...... .... .....+.++||||......           ..
T Consensus        28 ~ki~vvG~~~vGKSsL~~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-----------~~   92 (214)
T 3q3j_B           28 CKLVLVGDVQCGKTAMLQVLAKDCYP----ETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDN-----------VR   92 (214)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCC----SSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTT-----------TG
T ss_pred             EEEEEECcCCCCHHHHHHHHhcCCCC----CCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHH-----------HH
Confidence            79999999999999999999887542    111112111111 1111 1234678999999654211           12


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHH-H--------hcCCCCcHHHHHHHHHhh---------------------HHHHHh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEE-A--------ANGGQPYTDEFLAELKRG---------------------ATELRD  151 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~-~--------~~~~~~~~~~~~~~~~~~---------------------~~~l~~  151 (231)
                      ...+..+|++++|+|+++..+.... .        .....|++ .+.++.|..                     ...+..
T Consensus        93 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~  171 (214)
T 3q3j_B           93 PLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVL-LIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAK  171 (214)
T ss_dssp             GGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEE-EEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHH
T ss_pred             HHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEE-EEEEChhhccchhhhhhhcccccCccCHHHHHHHHH
Confidence            2345788999999999854433331 1        11223333 222332210                     012222


Q ss_pred             hcc--chhhhhhhhHhh-HHHHHHHHHHHHH
Q 038053          152 QQA--EVDSLKEYSKQE-ISKLMGQMQESYE  179 (231)
Q Consensus       152 ~~~--~i~~is~~~~~~-i~~l~~~i~~~~~  179 (231)
                      ..+  +++.+||+++.| +++++..+.....
T Consensus       172 ~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~  202 (214)
T 3q3j_B          172 QLGAEIYLEGSAFTSEKSIHSIFRTASMLCL  202 (214)
T ss_dssp             HHTCSEEEECCTTTCHHHHHHHHHHHHHHHH
T ss_pred             HcCCCEEEEeccCCCcccHHHHHHHHHHHHh
Confidence            222  567789999998 9999888877543

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.11  E-value=5.7e-11  Score=104.17  Aligned_cols=86  Identities=17%  Similarity=0.212  Sum_probs=58.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCcccc-----------------------------ccCCCCcceeeeeeeEEeeCCc
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKAFKA-----------------------------SADSSGVTKTCEMKTTVLKDGQ   73 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~-----------------------------~~~~~~~t~~~~~~~~~~~~~~   73 (231)
                      ..+|+++|.+|+|||||+|.|++......                             .....++|.+........ .+.
T Consensus        33 ~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~  111 (483)
T 3p26_A           33 HLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-HRA  111 (483)
T ss_dssp             EEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEEC-SSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEec-CCc
Confidence            37999999999999999999976521100                             011235565555444444 678


Q ss_pred             EEEEEeCCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCC
Q 038053           74 VVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSR  120 (231)
Q Consensus        74 ~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~  120 (231)
                      .+.++||||..+           +.......+..+|++++|+|++++
T Consensus       112 ~~~iiDTPG~~~-----------f~~~~~~~~~~aD~~llVvDa~~g  147 (483)
T 3p26_A          112 NFTIVDAPGHRD-----------FVPNAIMGISQADMAILCVDCSTN  147 (483)
T ss_dssp             EEEEECCCCCGG-----------GHHHHHHHHTTCSEEEEEEECCC-
T ss_pred             eEEEEECCCcHH-----------HHHHHHHhhhhCCEEEEEEECCCC
Confidence            899999999854           222233344678999999999864

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.11  E-value=4.2e-10  Score=88.09  Aligned_cols=142  Identities=18%  Similarity=0.156  Sum_probs=78.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCc--EEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+|+|.+|||||||+|.++|...... ...++++.+........ .+.  .+.++||+|...     .   ....  .
T Consensus        38 ~kVvlvG~~~vGKSSLl~r~~~~~~~~~-~~~~~~g~d~~~~~i~~-~~~~~~l~~~Dt~g~~~-----~---~~~l--~  105 (211)
T 2g3y_A           38 YRVVLIGEQGVGKSTLANIFAGVHDSMD-SDCEVLGEDTYERTLMV-DGESATIILLDMWENKG-----E---NEWL--H  105 (211)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCCCCTTC-CC---CCTTEEEEEEEE-TTEEEEEEEECCTTTTH-----H---HHHH--H
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCC-CcCCccceeeEEEEEEE-CCeeeEEEEeecCCCcc-----h---hhhH--H
Confidence            6899999999999999999998643211 11112222211222222 443  456789988542     0   1111  2


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH------h----cCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA------A----NGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKE  161 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~------~----~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~  161 (231)
                      ...+..++++++|+|.++.-+.....      .    ....|++ .+.++.|..         ...+....+ +++.+||
T Consensus       106 ~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~pii-lVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SA  184 (211)
T 2g3y_A          106 DHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII-LVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSA  184 (211)
T ss_dssp             HCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEE-EEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBT
T ss_pred             HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEE-EEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeC
Confidence            23346789999999998532211111      1    1233433 333443311         011111122 5677899


Q ss_pred             hhHhhHHHHHHHHHHHH
Q 038053          162 YSKQEISKLMGQMQESY  178 (231)
Q Consensus       162 ~~~~~i~~l~~~i~~~~  178 (231)
                      ++|.|+++++..+....
T Consensus       185 k~g~~v~elf~~l~~~i  201 (211)
T 2g3y_A          185 AVQHNVKELFEGIVRQV  201 (211)
T ss_dssp             TTTBSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHH
Confidence            99999999998887643

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.10  E-value=7.7e-10  Score=89.78  Aligned_cols=102  Identities=20%  Similarity=0.248  Sum_probs=52.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccC------CCCcceeeeeeeEEee--CCcEEEEEeCCCCcCCCCC---chH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASAD------SSGVTKTCEMKTTVLK--DGQVVNVIDTPGLFDSSAG---SEF   92 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~------~~~~t~~~~~~~~~~~--~~~~~~l~Dtpg~~~~~~~---~~~   92 (231)
                      ++++|+|+||||||||+|+|+|...+..|..      .+..+...........  -...+.++|+||+......   ...
T Consensus         3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~   82 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP   82 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence            7899999999999999999999876543311      0111111111111110  1235789999998653321   112


Q ss_pred             HHHHH----HHHHhhh----------cCCccEEEEEEECC-CCCCHHH
Q 038053           93 VGKEI----VKRIGLA----------KGGIHAVLVVFSVR-SRFSQEE  125 (231)
Q Consensus        93 ~~~~~----~~~~~~~----------~~~~~~il~vvd~~-~~~~~~~  125 (231)
                      +...+    .......          ..++++.++++|.. .+++..+
T Consensus        83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD  130 (270)
T 3sop_A           83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD  130 (270)
T ss_dssp             HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH
T ss_pred             HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH
Confidence            22222    1222111          24568899999975 3344333

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.10  E-value=1.1e-10  Score=89.84  Aligned_cols=143  Identities=14%  Similarity=0.158  Sum_probs=77.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      ..+|+++|.+|||||||+|.+++.......... ..+...............+.++||||........-.    .    .
T Consensus        20 ~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~----~----~   90 (196)
T 3llu_A           20 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFL-ESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFD----Y----E   90 (196)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGC-CCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCC----H----H
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhcCCCcceeee-ccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhh----c----c
Confidence            479999999999999999999997543211111 111111111111113467889999997542211100    0    1


Q ss_pred             hhcCCccEEEEEEECCCCCCHHHHH----------hcCCCCcHHHHHHHHHh-----------h-----HHHHHh----h
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEEEA----------ANGGQPYTDEFLAELKR-----------G-----ATELRD----Q  152 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~-----------~-----~~~l~~----~  152 (231)
                      ..+..+|++++|+|+++.+......          .....|++ .+.++.|.           .     ...+..    .
T Consensus        91 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~  169 (196)
T 3llu_A           91 MIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFE-VFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEK  169 (196)
T ss_dssp             HHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEE-EEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred             cccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEE-EEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhc
Confidence            1224579999999998653222111          12233333 22233320           0     012222    1


Q ss_pred             cc-chhhhhhhhHhhHHHHHHHHHH
Q 038053          153 QA-EVDSLKEYSKQEISKLMGQMQE  176 (231)
Q Consensus       153 ~~-~i~~is~~~~~~i~~l~~~i~~  176 (231)
                      .+ +++.+||++ .|+++++..+..
T Consensus       170 ~~~~~~e~Sa~~-~~v~~~f~~l~~  193 (196)
T 3llu_A          170 LHLSFYLTSIYD-HSIFEAFSKVVQ  193 (196)
T ss_dssp             SCEEEEEECTTS-THHHHHHHHHHH
T ss_pred             CCcceEEEEech-hhHHHHHHHHHH
Confidence            11 567789999 999998887765

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.09  E-value=1.1e-11  Score=99.55  Aligned_cols=43  Identities=21%  Similarity=0.295  Sum_probs=40.8

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      ++.|++..++++++|++++|  .+++|+|+||||||||+++|+|.
T Consensus        10 ~~~y~~~~vl~~vsl~i~~G--e~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           10 WASIDGETILKGVNLVVPKG--EVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEETTEEEEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEECCEEEEeceEEEEcCC--CEEEEECCCCCCHHHHHHHHhCC
Confidence            56788888999999999999  99999999999999999999997

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.09  E-value=1.1e-09  Score=92.41  Aligned_cols=106  Identities=19%  Similarity=0.237  Sum_probs=51.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCCccccccCC-----CCcceeeeeeeEEe-eCC--cEEEEEeCCCCcCCC-----
Q 038053           21 NGKRTVVLLGRTGNGKSATGNSILGRKAFKASADS-----SGVTKTCEMKTTVL-KDG--QVVNVIDTPGLFDSS-----   87 (231)
Q Consensus        21 g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~-----~~~t~~~~~~~~~~-~~~--~~~~l~Dtpg~~~~~-----   87 (231)
                      +....|+|+|++|+|||||+|+|++...+..+...     ...|.......... ..+  ..+.++||||+.+..     
T Consensus        35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~  114 (361)
T 2qag_A           35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC  114 (361)
T ss_dssp             CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence            33467999999999999999999988654332110     01222211111111 122  257899999995432     


Q ss_pred             --CCchHHHHHHHHHHhhhc---------CCccEEEEEEEC-CCCCCHHHH
Q 038053           88 --AGSEFVGKEIVKRIGLAK---------GGIHAVLVVFSV-RSRFSQEEE  126 (231)
Q Consensus        88 --~~~~~~~~~~~~~~~~~~---------~~~~~il~vvd~-~~~~~~~~~  126 (231)
                        .....+...+..++....         .++|+++++++. ...+...+.
T Consensus       115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~  165 (361)
T 2qag_A          115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV  165 (361)
T ss_dssp             -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHH
Confidence              112222222223333221         245788888886 456776664

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.09  E-value=5.2e-10  Score=95.95  Aligned_cols=92  Identities=15%  Similarity=0.167  Sum_probs=60.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccc------c---c------CCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKA------S---A------DSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSA   88 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~------~---~------~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~   88 (231)
                      .+|+++|.+|+|||||+|.|++......      .   .      ...++|.+........ .+..+.++||||..+.  
T Consensus        12 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~~~iiDtpG~~~f--   88 (405)
T 2c78_A           12 VNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET-AKRHYSHVDCPGHADY--   88 (405)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC-SSCEEEEEECCCSGGG--
T ss_pred             EEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEecc-CCeEEEEEECCChHHH--
Confidence            7999999999999999999998411000      0   0      0234444433333333 5678899999997641  


Q ss_pred             CchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH
Q 038053           89 GSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA  127 (231)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~  127 (231)
                               .......+..+|.+++|+|++++.......
T Consensus        89 ---------~~~~~~~~~~aD~~ilVvda~~g~~~qt~~  118 (405)
T 2c78_A           89 ---------IKNMITGAAQMDGAILVVSAADGPMPQTRE  118 (405)
T ss_dssp             ---------HHHHHHHHTTCSSEEEEEETTTCCCHHHHH
T ss_pred             ---------HHHHHHHHHHCCEEEEEEECCCCCcHHHHH
Confidence                     122223346889999999998777665543

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.08  E-value=3.4e-10  Score=87.20  Aligned_cols=142  Identities=17%  Similarity=0.111  Sum_probs=79.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCc--EEEEEeCCCCcCCCCCchHHHHHHHHH
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAGSEFVGKEIVKR  100 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~Dtpg~~~~~~~~~~~~~~~~~~  100 (231)
                      ..+|+|+|.+|||||||+|.+++......  ..++++.+........ .+.  .+.+.||||.....   .    .+...
T Consensus        23 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~---~----~~~~~   92 (195)
T 3cbq_A           23 IFKVMLVGESGVGKSTLAGTFGGLQGDSA--HEPENPEDTYERRIMV-DKEEVTLVVYDIWEQGDAG---G----WLRDH   92 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHTCCEECCGG--GTTTSCTTEEEEEEEE-TTEEEEEEEECCCCCSGGG---H----HHHHH
T ss_pred             EEEEEEECCCCCCHHHHHHHHHhccCCcc--CCCCcccceEEEEEEE-CCEEEEEEEEecCCCccch---h----hhHHH
Confidence            47999999999999999999987543211  1222232222222222 333  45678999975411   1    11111


Q ss_pred             HhhhcCCccEEEEEEECCCCCCHHHHH--------hc--CCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhh
Q 038053          101 IGLAKGGIHAVLVVFSVRSRFSQEEEA--------AN--GGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLK  160 (231)
Q Consensus       101 ~~~~~~~~~~il~vvd~~~~~~~~~~~--------~~--~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is  160 (231)
                         .+..+|++++|+|+++..+.....        ..  ...|++ .+.++.|..         ...+....+ +++.+|
T Consensus        93 ---~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~S  168 (195)
T 3cbq_A           93 ---CLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVI-LVGNKSDLARSREVSLEEGRHLAGTLSCKHIETS  168 (195)
T ss_dssp             ---HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEE-EEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEB
T ss_pred             ---hhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEeechhccccCCcCHHHHHHHHHHhCCEEEEEc
Confidence               224579999999998532211111        11  233433 233333210         012222222 567789


Q ss_pred             hhhHhhHHHHHHHHHHHH
Q 038053          161 EYSKQEISKLMGQMQESY  178 (231)
Q Consensus       161 ~~~~~~i~~l~~~i~~~~  178 (231)
                      ++++.|+++++..+....
T Consensus       169 a~~~~~v~~lf~~l~~~i  186 (195)
T 3cbq_A          169 AALHHNTRELFEGAVRQI  186 (195)
T ss_dssp             TTTTBSHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHH
Confidence            999999999988887643

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.07  E-value=1.9e-10  Score=95.36  Aligned_cols=138  Identities=14%  Similarity=0.106  Sum_probs=81.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcE--EEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQV--VNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+++|.+|+|||||+|.+++....   ....+++.......... .+..  +.++||||.....           ...
T Consensus       156 ~~i~i~G~~~~GKssli~~~~~~~~~---~~~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~-----------~~~  220 (332)
T 2wkq_A          156 IKCVVVGDGAVGKTCLLISYTTNAFP---GEYIPTVFDNYSANVMV-DGKPVNLGLWDTAGLEDYD-----------RLR  220 (332)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCC---CSCCCCSEEEEEEEEEE-TTEEEEEEEEEECCCGGGT-----------TTG
T ss_pred             eEEEEECCCCCChHHHHHHHHhCCCC---cccCCcccceeEEEEEE-CCEEEEEEEEeCCCchhhh-----------HHH
Confidence            79999999999999999999976431   12222232222222222 4444  4499999975422           112


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhhH---------------------HHHHh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRGA---------------------TELRD  151 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~---------------------~~l~~  151 (231)
                      ...+..+|++++|+|+++..+..+..         .....|++ .+.++.|...                     ..+..
T Consensus       221 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~  299 (332)
T 2wkq_A          221 PLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPII-LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK  299 (332)
T ss_dssp             GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEE-EEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHH
T ss_pred             HHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEE-EEEEchhcccccchhhhccccccccccHHHHHHHHH
Confidence            23457889999999998543332211         12234443 2333333100                     11111


Q ss_pred             hcc--chhhhhhhhHhhHHHHHHHHHHH
Q 038053          152 QQA--EVDSLKEYSKQEISKLMGQMQES  177 (231)
Q Consensus       152 ~~~--~i~~is~~~~~~i~~l~~~i~~~  177 (231)
                      ..+  +++.+|+++|.|+++++..+...
T Consensus       300 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  327 (332)
T 2wkq_A          300 EIGAVKYLECSALTQRGLKTVFDEAIRA  327 (332)
T ss_dssp             HTTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             HcCCcEEEEecCCCCcCHHHHHHHHHHH
Confidence            111  56779999999999999887664

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.07  E-value=7e-12  Score=98.43  Aligned_cols=142  Identities=16%  Similarity=0.100  Sum_probs=81.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHH-HhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           23 KRTVVLLGRTGNGKSATGNS-ILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~-l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      ..+|+++|.+|||||||+|. +.|...... ....+.+.......... ....+.++||||........           
T Consensus        15 ~~ki~v~G~~~~GKSsli~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~-----------   81 (221)
T 3gj0_A           15 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKY-VATLGVEVHPLVFHTNR-GPIKFNVWDTAGQEKFGGLR-----------   81 (221)
T ss_dssp             EEEEEEEECTTSSHHHHHTTBHHHHHTCEE-ETTTTEEEEEEEEEETT-EEEEEEEEEECSGGGTSCCC-----------
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCC-CCccceeEEEEEEEECC-EEEEEEEEeCCChHHHhHHH-----------
Confidence            37999999999999999999 444433222 13334444332222211 23567899999965432111           


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH--------hcCCCCcHHHHHHHHHhhH----H---HHHh-hccchhhhhhhhHh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------ANGGQPYTDEFLAELKRGA----T---ELRD-QQAEVDSLKEYSKQ  165 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~----~---~l~~-~~~~i~~is~~~~~  165 (231)
                      ...+..+|++++|+|+++..+.....        .....|++ .+.++.|...    .   .+.. .--+++.+|++++.
T Consensus        82 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  160 (221)
T 3gj0_A           82 DGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIV-LCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNY  160 (221)
T ss_dssp             HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEE-EEEECTTSSSCSSCGGGCCHHHHHTCEEEECBGGGTB
T ss_pred             HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEE-EEEECCccccccccHHHHHHHHHcCCEEEEEeCCCCC
Confidence            11235789999999998533222211        11233433 3344443110    0   1111 11256778999999


Q ss_pred             hHHHHHHHHHHHH
Q 038053          166 EISKLMGQMQESY  178 (231)
Q Consensus       166 ~i~~l~~~i~~~~  178 (231)
                      |+++++..+....
T Consensus       161 gi~~l~~~l~~~l  173 (221)
T 3gj0_A          161 NFEKPFLWLARKL  173 (221)
T ss_dssp             TTTHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            9999998887754

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.06  E-value=4e-10  Score=85.87  Aligned_cols=143  Identities=15%  Similarity=0.143  Sum_probs=71.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEe----eCCcEEEEEeCCCCcCCCCCchHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVL----KDGQVVNVIDTPGLFDSSAGSEFVGKEIVK   99 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~   99 (231)
                      .+|+|+|++|||||||+|.+++......+...+....+........    .....+.+.||||......        +..
T Consensus         3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~   74 (184)
T 2zej_A            3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYS--------THP   74 (184)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHT--------TSH
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHH--------hhH
Confidence            6899999999999999999999642111111111112111111110    1345678999999642110        111


Q ss_pred             HHhhhcCCccEEEEEEECCCCCCHH-HHH--------hcCCCCcHHHHHHHHHhhH------------HHHHhhcc-c--
Q 038053          100 RIGLAKGGIHAVLVVFSVRSRFSQE-EEA--------ANGGQPYTDEFLAELKRGA------------TELRDQQA-E--  155 (231)
Q Consensus       100 ~~~~~~~~~~~il~vvd~~~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~------------~~l~~~~~-~--  155 (231)
                         ..+..++++++|+|++++.+.. ...        .....|++ .+.++.|...            ..+....+ +  
T Consensus        75 ---~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (184)
T 2zej_A           75 ---HFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVI-LVGTHLDVSDEKQRKACMSKITKELLNKRGFPAI  150 (184)
T ss_dssp             ---HHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEE-EEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEE
T ss_pred             ---HHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEE-EEEECCCcccchhhHHHHHHHHHHHHHhcCCcch
Confidence               1123468889999997543211 111        11233333 2223332110            11211112 2  


Q ss_pred             --hhhhhhhhHh-hHHHHHHHHHHHH
Q 038053          156 --VDSLKEYSKQ-EISKLMGQMQESY  178 (231)
Q Consensus       156 --i~~is~~~~~-~i~~l~~~i~~~~  178 (231)
                        ++.+||+++. ++..++..+.+.+
T Consensus       151 ~~~~~~Sa~~~~~~~~~l~~~i~~~~  176 (184)
T 2zej_A          151 RDYHFVNATEESDALAKLRKTIINES  176 (184)
T ss_dssp             EEEEECCTTSCCHHHHHHHHHHHHHH
T ss_pred             hheEEEecccCchhHHHHHHHHHHHH
Confidence              6678999995 8888888776643

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.05  E-value=1.6e-11  Score=98.57  Aligned_cols=75  Identities=13%  Similarity=0.022  Sum_probs=53.1

Q ss_pred             ccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee----EEeeCCcEEEEEeCCCCc
Q 038053            9 VIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT----TVLKDGQVVNVIDTPGLF   84 (231)
Q Consensus         9 ~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~l~Dtpg~~   84 (231)
                      .++++++|++++|  .+++|+|+||||||||+++|+|...+    . |.+........    ... .....++++.|.++
T Consensus        14 ~vl~~vsl~i~~G--e~~~liG~NGsGKSTLlk~l~Gl~~p----~-G~i~~~g~~~~~~~~~~~-~~~i~~v~q~~~~~   85 (249)
T 2qi9_C           14 TRLGPLSGEVRAG--EILHLVGPNGAGKSTLLARMAGMTSG----K-GSIQFAGQPLEAWSATKL-ALHRAYLSQQQTPP   85 (249)
T ss_dssp             TTEEEEEEEEETT--CEEEEECCTTSSHHHHHHHHTTSSCC----E-EEEEETTEEGGGSCHHHH-HHHEEEECSCCCCC
T ss_pred             EEEeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCC----C-eEEEECCEECCcCCHHHH-hceEEEECCCCccC
Confidence            6899999999999  99999999999999999999999873    3 33332211100    000 23467888888877


Q ss_pred             CCCCCch
Q 038053           85 DSSAGSE   91 (231)
Q Consensus        85 ~~~~~~~   91 (231)
                      +..++.+
T Consensus        86 ~~~tv~e   92 (249)
T 2qi9_C           86 FATPVWH   92 (249)
T ss_dssp             TTCBHHH
T ss_pred             CCCcHHH
Confidence            6544433

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=99.05  E-value=3.8e-10  Score=92.20  Aligned_cols=62  Identities=23%  Similarity=0.356  Sum_probs=39.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCc
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGS   90 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~   90 (231)
                      .+++++|.||+|||||+|+|+|.....++ ..+++|+..+..  .  .+..+.++||||+.......
T Consensus       121 ~~v~~vG~~nvGKSsliN~l~~~~~~~~~-~~~g~T~~~~~~--~--~~~~~~l~DtpG~~~~~~~~  182 (282)
T 1puj_A          121 IRALIIGIPNVGKSTLINRLAKKNIAKTG-DRPGITTSQQWV--K--VGKELELLDTPGILWPKFED  182 (282)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCC-------------CCE--E--ETTTEEEEECCCCCCSCCCC
T ss_pred             ceEEEEecCCCchHHHHHHHhcCceeecC-CCCCeeeeeEEE--E--eCCCEEEEECcCcCCCCCCC
Confidence            78999999999999999999998865553 456677655421  1  24568899999998755433

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.04  E-value=1.5e-11  Score=104.60  Aligned_cols=79  Identities=22%  Similarity=0.213  Sum_probs=54.8

Q ss_pred             CCCC--CCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcccccc-CCCCcceeeeeeeEEeeCCcEEEEE
Q 038053            2 SSGM--GERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASA-DSSGVTKTCEMKTTVLKDGQVVNVI   78 (231)
Q Consensus         2 ~~~~--~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~   78 (231)
                      ++.|  ++..++++++|++++|  ..++|+|+||||||||+++|+|... ..|. ...+..... ...... .....+++
T Consensus        26 ~~~y~~~~~~~L~~vsl~i~~G--e~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~-~~~~~~-rr~ig~v~  100 (390)
T 3gd7_A           26 TAKYTEGGNAILENISFSISPG--QRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDS-ITLEQW-RKAFGVIP  100 (390)
T ss_dssp             EEESSSSSCCSEEEEEEEECTT--CEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTS-SCHHHH-HHTEEEES
T ss_pred             EEEecCCCeEEeeceeEEEcCC--CEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCc-CChHHH-hCCEEEEc
Confidence            5678  6788999999999999  9999999999999999999999875 3321 111111000 000000 23467888


Q ss_pred             eCCCCcC
Q 038053           79 DTPGLFD   85 (231)
Q Consensus        79 Dtpg~~~   85 (231)
                      |.|.+++
T Consensus       101 Q~~~lf~  107 (390)
T 3gd7_A          101 QKVFIFS  107 (390)
T ss_dssp             CCCCCCS
T ss_pred             CCcccCc
Confidence            8888775

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.03  E-value=1.1e-10  Score=91.81  Aligned_cols=139  Identities=14%  Similarity=0.072  Sum_probs=76.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcce--eeeeeeEEee-CCcEEEEEeCCCCcCCCCCchHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTK--TCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKR  100 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~--~~~~~~~~~~-~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~  100 (231)
                      .+|+|+|.+|+|||||++.++...-.    .....|.  +......... ....+.+.||+|......        +   
T Consensus        14 ~KivlvGd~~VGKTsLi~r~~~~~f~----~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~--------l---   78 (216)
T 4dkx_A           14 FKLVFLGEQSVGKTSLITRFMYDSFD----NTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRS--------L---   78 (216)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCC--------------CEEEEEECSSCEEEEEEECCSCTTTCGG--------G---
T ss_pred             EEEEEECcCCcCHHHHHHHHHhCCCC----CCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhh--------H---
Confidence            68999999999999999998865421    1111122  1111112220 223567899999754221        1   


Q ss_pred             HhhhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHh---------hHHHHHhhcc-chhhhhh
Q 038053          101 IGLAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKR---------GATELRDQQA-EVDSLKE  161 (231)
Q Consensus       101 ~~~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~---------~~~~l~~~~~-~i~~is~  161 (231)
                      ....+..++++++|+|.++.-+-....         .....|++ .+.++.|.         ++..+....+ +.+.+||
T Consensus        79 ~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~pii-lVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SA  157 (216)
T 4dkx_A           79 IPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIM-LVGNKTDLADKRQVSIEEGERKAKELNVMFIETSA  157 (216)
T ss_dssp             HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEE-EEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBT
T ss_pred             HHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEE-EEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeC
Confidence            122346789999999998532222211         11222222 22222221         0112222222 5566899


Q ss_pred             hhHhhHHHHHHHHHHHH
Q 038053          162 YSKQEISKLMGQMQESY  178 (231)
Q Consensus       162 ~~~~~i~~l~~~i~~~~  178 (231)
                      ++|.|+++++..+....
T Consensus       158 ktg~nV~e~F~~i~~~i  174 (216)
T 4dkx_A          158 KAGYNVKQLFRRVAAAL  174 (216)
T ss_dssp             TTTBSHHHHHHHHHHHC
T ss_pred             CCCcCHHHHHHHHHHHH
Confidence            99999999988876643

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.03  E-value=9e-10  Score=100.02  Aligned_cols=98  Identities=27%  Similarity=0.311  Sum_probs=62.6

Q ss_pred             cCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcccc--c-c-------C------CCCcceeeeeeeEEeeCCcEEEEEe
Q 038053           16 PTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKA--S-A-------D------SSGVTKTCEMKTTVLKDGQVVNVID   79 (231)
Q Consensus        16 ~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~--~-~-------~------~~~~t~~~~~~~~~~~~~~~~~l~D   79 (231)
                      +.+.++  .+|+|+|++|+|||||++.|++......  + .       +      ..++|...+.....+ ....+.++|
T Consensus         4 ~~~~~~--~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~-~~~~~nliD   80 (665)
T 2dy1_A            4 EGGAMI--RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF-RGHRVFLLD   80 (665)
T ss_dssp             --CCCE--EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEE-TTEEEEEEE
T ss_pred             CccCCC--cEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEee-CCEEEEEEe
Confidence            456677  8999999999999999999995432100  0 0       0      113344333334444 677889999


Q ss_pred             CCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH
Q 038053           80 TPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA  127 (231)
Q Consensus        80 tpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~  127 (231)
                      |||..+.       ...+..    .+..+|.+++|+|+++++......
T Consensus        81 TpG~~~f-------~~~~~~----~l~~ad~~ilVvD~~~g~~~qt~~  117 (665)
T 2dy1_A           81 APGYGDF-------VGEIRG----ALEAADAALVAVSAEAGVQVGTER  117 (665)
T ss_dssp             CCCSGGG-------HHHHHH----HHHHCSEEEEEEETTTCSCHHHHH
T ss_pred             CCCccch-------HHHHHH----HHhhcCcEEEEEcCCcccchhHHH
Confidence            9997641       122222    234569999999998777765544

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.02  E-value=5.9e-10  Score=85.95  Aligned_cols=140  Identities=14%  Similarity=0.143  Sum_probs=76.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCc--EEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+|+|+||||||||+|.|+|......  ..+..+.......... .+.  .+.+.||||........           
T Consensus         6 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~--~~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~~-----------   71 (199)
T 2f9l_A            6 FKVVLIGDSGVGKSNLLSRFTRNEFNLE--SKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRRIT-----------   71 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCCC-----CCCSCEEEEEEEEE-TTEEEEEEEEECSSGGGTTCCC-----------
T ss_pred             EEEEEECcCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEEEE-CCEEEEEEEEECCCchhhhhhh-----------
Confidence            6899999999999999999999864221  1222222222333333 443  45679999965422110           


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH--------h-cCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------A-NGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKEY  162 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~~  162 (231)
                      ......++++++|+|..+..+..+..        . ....++. .+.++.+..         ...+....+ .+..+|++
T Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~-~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal  150 (199)
T 2f9l_A           72 SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM-LVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSAL  150 (199)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEE-EEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred             HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEE-EEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCC
Confidence            11224678899999987432222111        0 1112222 222222210         012222112 34558999


Q ss_pred             hHhhHHHHHHHHHHHH
Q 038053          163 SKQEISKLMGQMQESY  178 (231)
Q Consensus       163 ~~~~i~~l~~~i~~~~  178 (231)
                      ++.++.+++..+....
T Consensus       151 ~~~~i~~l~~~l~~~~  166 (199)
T 2f9l_A          151 DSTNVEEAFKNILTEI  166 (199)
T ss_dssp             TCTTHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            9999999888877754

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=99.02  E-value=3.2e-11  Score=90.15  Aligned_cols=80  Identities=21%  Similarity=0.175  Sum_probs=54.7

Q ss_pred             CCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccc-cCCCCcceeeeeeeEEeeCCcEEEEEeCC
Q 038053            3 SGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKAS-ADSSGVTKTCEMKTTVLKDGQVVNVIDTP   81 (231)
Q Consensus         3 ~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~Dtp   81 (231)
                      +.|++..++++++|++++|  ..++|+|+||||||||++.|+|.. +..+ ...++.+....   ... ..   ++++.+
T Consensus        15 ~~~g~~~~l~~vsl~i~~G--e~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~---~~~-~~---~~~q~~   84 (158)
T 1htw_A           15 LRFGKKFAEILLKLHTEKA--IMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE---YNI-AG---KMIYHF   84 (158)
T ss_dssp             HHHHHHHHHHHHHHCCSSC--EEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE---EEE-TT---EEEEEE
T ss_pred             HHHHHHHHHhccccccCCC--CEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee---ccC-CC---cceecc
Confidence            4566777899999999999  999999999999999999999987 4433 23333333211   111 22   356666


Q ss_pred             CCcCCCCCchHH
Q 038053           82 GLFDSSAGSEFV   93 (231)
Q Consensus        82 g~~~~~~~~~~~   93 (231)
                      .++ ..++.+.+
T Consensus        85 ~l~-~ltv~e~l   95 (158)
T 1htw_A           85 DLY-RLADPEEL   95 (158)
T ss_dssp             ECT-TCSCTTHH
T ss_pred             ccc-cCCcHHHH
Confidence            666 55554544

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=99.02  E-value=2.2e-11  Score=97.21  Aligned_cols=82  Identities=20%  Similarity=0.062  Sum_probs=54.4

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEEeeCCcEEEEEeC
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTVLKDGQVVNVIDT   80 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~Dt   80 (231)
                      ++.|++  ++++++|++++   .+++|+|+||||||||+++|+|...+..|    .+....... ..........++++.
T Consensus         8 ~~~y~~--~l~~isl~i~~---e~~~liG~nGsGKSTLl~~l~Gl~~p~~G----~i~~~g~~~~~~~~~~~~i~~v~q~   78 (240)
T 2onk_A            8 EKRLGN--FRLNVDFEMGR---DYCVLLGPTGAGKSVFLELIAGIVKPDRG----EVRLNGADITPLPPERRGIGFVPQD   78 (240)
T ss_dssp             EEEETT--EEEEEEEEECS---SEEEEECCTTSSHHHHHHHHHTSSCCSEE----EEEETTEECTTSCTTTSCCBCCCSS
T ss_pred             EEEeCC--EEeeeEEEECC---EEEEEECCCCCCHHHHHHHHhCCCCCCce----EEEECCEECCcCchhhCcEEEEcCC
Confidence            556765  49999999997   38999999999999999999999874333    222211100 000002345678888


Q ss_pred             CCCcCCCCCchH
Q 038053           81 PGLFDSSAGSEF   92 (231)
Q Consensus        81 pg~~~~~~~~~~   92 (231)
                      |.+++..++.++
T Consensus        79 ~~l~~~ltv~en   90 (240)
T 2onk_A           79 YALFPHLSVYRN   90 (240)
T ss_dssp             CCCCTTSCHHHH
T ss_pred             CccCCCCcHHHH
Confidence            888776554443

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.02  E-value=6.2e-11  Score=106.21  Aligned_cols=78  Identities=19%  Similarity=0.147  Sum_probs=57.0

Q ss_pred             CCCCCC--cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-E--EeeCCcEEE
Q 038053            2 SSGMGE--RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-T--VLKDGQVVN   76 (231)
Q Consensus         2 ~~~~~~--~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-~--~~~~~~~~~   76 (231)
                      ++.|++  .++++++++++++|  ..++|+|+||||||||+++|+|...    +..|.+..+..... .  ........+
T Consensus       348 ~~~y~~~~~~~l~~i~l~i~~G--~~~~ivG~sGsGKSTll~~l~g~~~----p~~G~i~~~g~~~~~~~~~~~~~~i~~  421 (582)
T 3b5x_A          348 TFTYQGKEKPALSHVSFSIPQG--KTVALVGRSGSGKSTIANLFTRFYD----VDSGSICLDGHDVRDYKLTNLRRHFAL  421 (582)
T ss_pred             EEEcCCCCccccccceEEECCC--CEEEEECCCCCCHHHHHHHHhcCCC----CCCCEEEECCEEhhhCCHHHHhcCeEE
Confidence            456764  67999999999999  9999999999999999999999987    34444443321110 0  001345778


Q ss_pred             EEeCCCCcC
Q 038053           77 VIDTPGLFD   85 (231)
Q Consensus        77 l~Dtpg~~~   85 (231)
                      ++|.|.+++
T Consensus       422 v~Q~~~l~~  430 (582)
T 3b5x_A          422 VSQNVHLFN  430 (582)
T ss_pred             EcCCCcccc
Confidence            888887765

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.02  E-value=2.8e-10  Score=87.35  Aligned_cols=138  Identities=15%  Similarity=0.162  Sum_probs=75.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcE--EEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQV--VNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+|+|+||||||||+|.|+|......  ..+..+.+........ .+..  +.+.||||........           
T Consensus        30 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~--~~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~~-----------   95 (191)
T 1oix_A           30 FKVVLIGDSGVGKSNLLSRFTRNEFNLE--SKSTIGVEFATRSIQV-DGKTIKAQIWDTAGLERYRAIT-----------   95 (191)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSCCCCS--CCCCCSEEEEEEEEEE-TTEEEEEEEEEECSCCSSSCCC-----------
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCCCCCC--CCCccceEEEEEEEEE-CCEEEEEEEEECCCCcchhhhh-----------
Confidence            6899999999999999999999875321  2233333333333333 4443  4469999975422111           


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH--------hc-CCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------AN-GGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKEY  162 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~~  162 (231)
                      ...+..++.+++|+|..+..+.....        .. ...++. .+.++.+..         +..+....+ .+..+|++
T Consensus        96 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~-~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sal  174 (191)
T 1oix_A           96 SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM-LVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSAL  174 (191)
T ss_dssp             HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEE-EEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred             HHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEE-EEEECcccccccccCHHHHHHHHHHcCCEEEEEeCC
Confidence            11224567889999987432211100        01 112222 222222210         012222111 34458899


Q ss_pred             hHhhHHHHHHHHHH
Q 038053          163 SKQEISKLMGQMQE  176 (231)
Q Consensus       163 ~~~~i~~l~~~i~~  176 (231)
                      ++.++.++++.+.+
T Consensus       175 d~~~v~~l~~~l~~  188 (191)
T 1oix_A          175 DSTNVEAAFQTILT  188 (191)
T ss_dssp             TCTTHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHH
Confidence            99999988887755

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.01  E-value=2e-10  Score=97.39  Aligned_cols=89  Identities=24%  Similarity=0.231  Sum_probs=59.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC-----CccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGR-----KAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIV   98 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~-----~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~   98 (231)
                      ..|+++|.+|+|||||+|+|+|.     ..... ...+++|+......    .+..+.++||||+.......+.+..+.+
T Consensus       163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~-~~~~gtT~~~~~~~----~~~~~~liDtPG~~~~~~~~~~l~~~~l  237 (369)
T 3ec1_A          163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITT-SYFPGTTLDMIEIP----LESGATLYDTPGIINHHQMAHFVDARDL  237 (369)
T ss_dssp             SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEE-EECTTSSCEEEEEE----CSTTCEEEECCSCCCCSSGGGGSCTTTH
T ss_pred             CcEEEEcCCCCchHHHHHHHHhhccCCccceee-cCCCCeEEeeEEEE----eCCCeEEEeCCCcCcHHHHHHHHhHHHH
Confidence            68999999999999999999987     22222 24566776544322    2333789999999865433333333333


Q ss_pred             HHHhhhcCCccEEEEEEECC
Q 038053           99 KRIGLAKGGIHAVLVVFSVR  118 (231)
Q Consensus        99 ~~~~~~~~~~~~il~vvd~~  118 (231)
                      ..+.. ...+|.+++++++.
T Consensus       238 ~~~~~-~~~i~~~~~~l~~~  256 (369)
T 3ec1_A          238 KIITP-KREIHPRVYQLNEG  256 (369)
T ss_dssp             HHHSC-SSCCCCEEEEECTT
T ss_pred             HHHhc-ccccCceEEEEcCC
Confidence            33322 26789999999983

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.01  E-value=1.6e-09  Score=93.65  Aligned_cols=91  Identities=13%  Similarity=0.178  Sum_probs=58.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccc-------------C------------------CCCcceeeeeeeEEeeCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASA-------------D------------------SSGVTKTCEMKTTVLKDG   72 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~-------------~------------------~~~~t~~~~~~~~~~~~~   72 (231)
                      .+|+++|.+|+|||||+|.|++........             .                  ..++|.+........ .+
T Consensus        25 ~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~-~~  103 (434)
T 1zun_B           25 LRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST-AK  103 (434)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC-SS
T ss_pred             eEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec-CC
Confidence            789999999999999999998654111000             0                  023343333333333 56


Q ss_pred             cEEEEEeCCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHH
Q 038053           73 QVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEE  126 (231)
Q Consensus        73 ~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~  126 (231)
                      ..+.++||||..+.       ...+.    ..+..+|++++|+|+++++.....
T Consensus       104 ~~~~iiDtpGh~~f-------~~~~~----~~~~~aD~~ilVvDa~~g~~~qt~  146 (434)
T 1zun_B          104 RKFIIADTPGHEQY-------TRNMA----TGASTCDLAIILVDARYGVQTQTR  146 (434)
T ss_dssp             EEEEEEECCCSGGG-------HHHHH----HHHTTCSEEEEEEETTTCSCHHHH
T ss_pred             ceEEEEECCChHHH-------HHHHH----HHHhhCCEEEEEEECCCCCcHHHH
Confidence            78899999996531       11222    234788999999999877765554

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.01  E-value=1e-09  Score=98.09  Aligned_cols=142  Identities=15%  Similarity=0.228  Sum_probs=81.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccc----c---------cCCCCcceeeeeeeEEee--C--CcEEEEEeCCCCcCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKA----S---------ADSSGVTKTCEMKTTVLK--D--GQVVNVIDTPGLFDS   86 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~----~---------~~~~~~t~~~~~~~~~~~--~--~~~~~l~Dtpg~~~~   86 (231)
                      .+|+|+|..|+|||||++.|+.......    +         ....++|.........+.  .  ...+.++||||..+.
T Consensus         7 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF   86 (600)
T 2ywe_A            7 RNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDF   86 (600)
T ss_dssp             EEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGGG
T ss_pred             eEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhH
Confidence            6899999999999999999975311000    0         001233433332233331  1  256789999998752


Q ss_pred             CCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhhH-------HHHHhhcc
Q 038053           87 SAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRGA-------TELRDQQA  154 (231)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-------~~l~~~~~  154 (231)
                             ..++..    .+..+|++++|+|++++...+...     .....|.+ .++|++|...       +++.+.+.
T Consensus        87 -------~~ev~r----~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiI-vviNKiDl~~a~~~~v~~el~~~lg  154 (600)
T 2ywe_A           87 -------SYEVSR----ALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVII-PVINKIDLPSADVDRVKKQIEEVLG  154 (600)
T ss_dssp             -------HHHHHH----HHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEE-EEEECTTSTTCCHHHHHHHHHHTSC
T ss_pred             -------HHHHHH----HHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEE-EEEeccCccccCHHHHHHHHHHhhC
Confidence                   122222    335679999999999777766544     22333332 3344444211       23444333


Q ss_pred             ----chhhhhhhhHhhHHHHHHHHHHH
Q 038053          155 ----EVDSLKEYSKQEISKLMGQMQES  177 (231)
Q Consensus       155 ----~i~~is~~~~~~i~~l~~~i~~~  177 (231)
                          +++++||++|.|++++++.+...
T Consensus       155 ~~~~~vi~vSAktg~GI~~Lle~I~~~  181 (600)
T 2ywe_A          155 LDPEEAILASAKEGIGIEEILEAIVNR  181 (600)
T ss_dssp             CCGGGCEECBTTTTBSHHHHHHHHHHH
T ss_pred             CCcccEEEEEeecCCCchHHHHHHHHh
Confidence                47889999999999998887653

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.00  E-value=3.8e-10  Score=101.02  Aligned_cols=91  Identities=16%  Similarity=0.220  Sum_probs=56.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEe-----------------eCCcEEEEEeCCCCcCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVL-----------------KDGQVVNVIDTPGLFDS   86 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-----------------~~~~~~~l~Dtpg~~~~   86 (231)
                      .+|+++|.+|+|||||++.|++......  ..++.|.........+                 .....+.++||||..+.
T Consensus         6 ~~V~IvGh~d~GKTTLl~~L~~~~v~~~--e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F   83 (594)
T 1g7s_A            6 PIVSVLGHVDHGKTTLLDHIRGSAVASR--EAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF   83 (594)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHSCC------CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred             cEEEEECCCCCcHHHHHHHHhcccCccc--cCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence            6899999999999999999998643211  1223333211111110                 01125889999997653


Q ss_pred             CCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH
Q 038053           87 SAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA  127 (231)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~  127 (231)
                      ...           ....+..+|.+++|+|+++++......
T Consensus        84 ~~~-----------~~r~~~~aD~aILVvDa~~Gv~~qT~e  113 (594)
T 1g7s_A           84 TTL-----------RKRGGALADLAILIVDINEGFKPQTQE  113 (594)
T ss_dssp             TTS-----------BCSSSBSCSEEEEEEETTTCCCHHHHH
T ss_pred             HHH-----------HHHHHhhCCEEEEEEECCCCccHhHHH
Confidence            321           112346789999999999877665544

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=99.00  E-value=9.8e-10  Score=97.89  Aligned_cols=63  Identities=24%  Similarity=0.255  Sum_probs=42.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEe------eCCcEEEEEeCCCCcCCC
Q 038053           22 GKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVL------KDGQVVNVIDTPGLFDSS   87 (231)
Q Consensus        22 ~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~------~~~~~~~l~Dtpg~~~~~   87 (231)
                      +..+|+++|+||+|||||+|.|+|.....   ..+++|..+..+...+      ..+..+.++||||+++..
T Consensus        37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~---~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~  105 (592)
T 1f5n_A           37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGF---SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVE  105 (592)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCSSCS---CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGG
T ss_pred             CCcEEEEECCCCCCHHHHHHhHcCCCCcc---ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCccc
Confidence            34789999999999999999999987521   2333332221211111      246788999999998643

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=98.99  E-value=5.2e-11  Score=96.31  Aligned_cols=47  Identities=19%  Similarity=0.230  Sum_probs=41.6

Q ss_pred             CCCCCC----cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccc
Q 038053            2 SSGMGE----RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKAS   52 (231)
Q Consensus         2 ~~~~~~----~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~   52 (231)
                      ++.|++    +.++++++|+++ |  .+++|+|+||||||||+++|+|.. +..|
T Consensus         8 ~~~y~~~~~~~~il~~vsl~i~-G--e~~~i~G~NGsGKSTLlk~l~Gl~-p~~G   58 (263)
T 2pjz_A            8 GITLSGKGYERFSLENINLEVN-G--EKVIILGPNGSGKTTLLRAISGLL-PYSG   58 (263)
T ss_dssp             EEEEEEETTEEEEEEEEEEEEC-S--SEEEEECCTTSSHHHHHHHHTTSS-CCEE
T ss_pred             EEEeCCCCccceeEEeeeEEEC-C--EEEEEECCCCCCHHHHHHHHhCCC-CCCc
Confidence            456665    789999999999 9  999999999999999999999998 6544

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.98  E-value=3.7e-10  Score=95.62  Aligned_cols=89  Identities=21%  Similarity=0.279  Sum_probs=55.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCc------cccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKA------FKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEI   97 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~------~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~   97 (231)
                      .+|+++|.+|+|||||+|+|+|...      ... ...+++|+......    -...+.++||||+.+.....+.+..+.
T Consensus       161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~-~~~~gtT~~~~~~~----~~~~~~liDtPG~~~~~~~~~~l~~~~  235 (368)
T 3h2y_A          161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITT-SHFPGTTLDLIDIP----LDEESSLYDTPGIINHHQMAHYVGKQS  235 (368)
T ss_dssp             SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEE-ECCC----CEEEEE----SSSSCEEEECCCBCCTTSGGGGSCHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHhhhccccccceec-CCCCCeecceEEEE----ecCCeEEEeCCCcCcHHHHHHHhhHHH
Confidence            6899999999999999999998731      112 24566666544322    122378999999987543333333444


Q ss_pred             HHHHhhhcCCccEEEEEEECC
Q 038053           98 VKRIGLAKGGIHAVLVVFSVR  118 (231)
Q Consensus        98 ~~~~~~~~~~~~~il~vvd~~  118 (231)
                      +..+.. ...++.+++++++.
T Consensus       236 l~~~~~-~~~i~~~~~~l~~~  255 (368)
T 3h2y_A          236 LKLITP-TKEIKPMVFQLNEE  255 (368)
T ss_dssp             HHHHSC-SSCCCCEEEEECTT
T ss_pred             HHHhcc-ccccCceEEEEcCC
Confidence            433322 35778888888873

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.96  E-value=1e-10  Score=105.16  Aligned_cols=77  Identities=17%  Similarity=0.147  Sum_probs=56.1

Q ss_pred             CCCCC-CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee----EEeeCCcEEE
Q 038053            2 SSGMG-ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT----TVLKDGQVVN   76 (231)
Q Consensus         2 ~~~~~-~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~   76 (231)
                      ++.|+ +.++++|+++++++|  ..++|+|+||||||||+++|+|...+.    .|.+..+.....    ... .....+
T Consensus       361 ~~~y~~~~~~l~~isl~i~~G--~~~~ivG~sGsGKSTll~~l~g~~~p~----~G~i~~~g~~i~~~~~~~~-r~~i~~  433 (598)
T 3qf4_B          361 WFSYDKKKPVLKDITFHIKPG--QKVALVGPTGSGKTTIVNLLMRFYDVD----RGQILVDGIDIRKIKRSSL-RSSIGI  433 (598)
T ss_dssp             ECCSSSSSCSCCSEEEECCTT--CEEEEECCTTSSTTHHHHHHTTSSCCS----EEEEEETTEEGGGSCHHHH-HHHEEE
T ss_pred             EEECCCCCccccceEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCcCCC----CeEEEECCEEhhhCCHHHH-HhceEE
Confidence            56775 467999999999999  999999999999999999999998743    333332211100    001 235778


Q ss_pred             EEeCCCCcC
Q 038053           77 VIDTPGLFD   85 (231)
Q Consensus        77 l~Dtpg~~~   85 (231)
                      ++|.|.+++
T Consensus       434 v~Q~~~lf~  442 (598)
T 3qf4_B          434 VLQDTILFS  442 (598)
T ss_dssp             ECTTCCCCS
T ss_pred             EeCCCcccc
Confidence            888888775

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=98.96  E-value=1.3e-09  Score=97.60  Aligned_cols=142  Identities=17%  Similarity=0.205  Sum_probs=78.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccc-------------cCCCCcceeeeeeeEEeeC----CcEEEEEeCCCCcCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKAS-------------ADSSGVTKTCEMKTTVLKD----GQVVNVIDTPGLFDS   86 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~-------------~~~~~~t~~~~~~~~~~~~----~~~~~l~Dtpg~~~~   86 (231)
                      .+|+|+|..|+|||||++.|+........             ....++|.........+..    ...+.++||||..+.
T Consensus         5 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF   84 (599)
T 3cb4_D            5 RNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDF   84 (599)
T ss_dssp             EEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGGG
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchHH
Confidence            68999999999999999999753211000             0012344443333333311    357889999998652


Q ss_pred             CCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhhH-------HHHHhhcc
Q 038053           87 SAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRGA-------TELRDQQA  154 (231)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-------~~l~~~~~  154 (231)
                             ..++...    +..+|.+++|+|++++.......     .....|.+ .++|++|...       +++.+.+.
T Consensus        85 -------~~ev~~~----l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiI-vViNKiDl~~a~~~~v~~ei~~~lg  152 (599)
T 3cb4_D           85 -------SYEVSRS----LAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVV-PVLNKIDLPAADPERVAEEIEDIVG  152 (599)
T ss_dssp             -------HHHHHHH----HHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEE-EEEECTTSTTCCHHHHHHHHHHHTC
T ss_pred             -------HHHHHHH----HHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEE-EeeeccCcccccHHHHHHHHHHHhC
Confidence                   2223332    34569999999998777665543     22233433 3344443211       23444333


Q ss_pred             ----chhhhhhhhHhhHHHHHHHHHHH
Q 038053          155 ----EVDSLKEYSKQEISKLMGQMQES  177 (231)
Q Consensus       155 ----~i~~is~~~~~~i~~l~~~i~~~  177 (231)
                          +++.+|+++|.|++++++.+...
T Consensus       153 ~~~~~vi~vSAktg~GI~~Ll~~I~~~  179 (599)
T 3cb4_D          153 IDATDAVRCSAKTGVGVQDVLERLVRD  179 (599)
T ss_dssp             CCCTTCEEECTTTCTTHHHHHHHHHHH
T ss_pred             CCcceEEEeecccCCCchhHHHHHhhc
Confidence                47889999999999998887653

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=98.95  E-value=6.7e-11  Score=106.01  Aligned_cols=78  Identities=21%  Similarity=0.179  Sum_probs=56.1

Q ss_pred             CCCCCC--cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-e---EEeeCCcEE
Q 038053            2 SSGMGE--RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-T---TVLKDGQVV   75 (231)
Q Consensus         2 ~~~~~~--~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~---~~~~~~~~~   75 (231)
                      ++.|++  +++++++++++++|  ..++|+|+||||||||+++|+|...+.    .|.+..+.... .   ... .....
T Consensus       348 ~~~y~~~~~~~l~~v~~~i~~G--~~~~ivG~sGsGKSTLl~~l~g~~~p~----~G~i~~~g~~~~~~~~~~~-~~~i~  420 (582)
T 3b60_A          348 TFTYPGREVPALRNINLKIPAG--KTVALVGRSGSGKSTIASLITRFYDID----EGHILMDGHDLREYTLASL-RNQVA  420 (582)
T ss_dssp             EECSSSSSCCSEEEEEEEECTT--CEEEEEECTTSSHHHHHHHHTTTTCCS----EEEEEETTEETTTBCHHHH-HHTEE
T ss_pred             EEEcCCCCCccccceeEEEcCC--CEEEEECCCCCCHHHHHHHHhhccCCC----CCeEEECCEEccccCHHHH-HhhCe
Confidence            457763  67999999999999  999999999999999999999998743    33332221110 0   001 23567


Q ss_pred             EEEeCCCCcCC
Q 038053           76 NVIDTPGLFDS   86 (231)
Q Consensus        76 ~l~Dtpg~~~~   86 (231)
                      +++|.|.+++.
T Consensus       421 ~v~Q~~~l~~~  431 (582)
T 3b60_A          421 LVSQNVHLFND  431 (582)
T ss_dssp             EECSSCCCCSS
T ss_pred             EEccCCcCCCC
Confidence            88998887753

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=98.95  E-value=6.2e-12  Score=110.13  Aligned_cols=137  Identities=12%  Similarity=0.212  Sum_probs=85.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+++|++|+|||||++.|++.....  ...+++|.+.......+ .+..+.++||||..+....           ...
T Consensus         5 ~~V~IvGhvd~GKTTLl~~L~~~~v~~--~e~~GIT~~i~~~~v~~-~~~~i~~iDTPGhe~f~~~-----------~~~   70 (501)
T 1zo1_I            5 PVVTIMGHVDHGKTSLLEYIRSTKVAS--GEAGGITQHIGAYHVET-ENGMITFLDTPGHAAFTSM-----------RAR   70 (501)
T ss_dssp             CCEEEEESTTSSSHHHHHHHHHHHHSB--TTBCCCCCCSSCCCCCT-TSSCCCEECCCTTTCCTTS-----------BCS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCcc--ccCCCeeEeEEEEEEEE-CCEEEEEEECCCcHHHHHH-----------HHH
Confidence            689999999999999999998754321  12345555443333333 5667889999997553211           123


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhhH---HHHHhh----------c---cchhhhhhh
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRGA---TELRDQ----------Q---AEVDSLKEY  162 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~---~~l~~~----------~---~~i~~is~~  162 (231)
                      .+..+|.+++|+|++++...+...     .....|++ .++|++|...   ..+...          .   -+++++||+
T Consensus        71 ~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiI-VviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAk  149 (501)
T 1zo1_I           71 GAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVV-VAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAK  149 (501)
T ss_dssp             SSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEE-EEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTT
T ss_pred             HHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEE-EEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeee
Confidence            346789999999998654433222     22334433 4455554211   011111          1   157789999


Q ss_pred             hHhhHHHHHHHHH
Q 038053          163 SKQEISKLMGQMQ  175 (231)
Q Consensus       163 ~~~~i~~l~~~i~  175 (231)
                      +|.|+.+++..+.
T Consensus       150 tG~gI~eLle~I~  162 (501)
T 1zo1_I          150 AGTGIDELLDAIL  162 (501)
T ss_dssp             TCTTCTTHHHHTT
T ss_pred             eccCcchhhhhhh
Confidence            9999998888764

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=98.94  E-value=2.9e-09  Score=82.79  Aligned_cols=81  Identities=20%  Similarity=0.290  Sum_probs=53.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeC--CcEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+++|.+|+|||||+|.+++.....   ...+++.  .........  +..+.++||||...       ....+.   
T Consensus         8 ~ki~vvG~~~~GKTsli~~l~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~---   72 (214)
T 2fh5_B            8 RAVLFVGLCDSGKTLLFVRLLTGQYRD---TQTSITD--SSAIYKVNNNRGNSLTLIDLPGHES-------LRFQLL---   72 (214)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSCCCC---BCCCCSC--EEEEEECSSTTCCEEEEEECCCCHH-------HHHHHH---
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCccc---ccCCcce--eeEEEEecCCCccEEEEEECCCChh-------HHHHHH---
Confidence            799999999999999999999876321   1222222  222233311  56789999999753       111122   


Q ss_pred             hhhcCCccEEEEEEECCC
Q 038053          102 GLAKGGIHAVLVVFSVRS  119 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~  119 (231)
                      ...+..+|++++|+|+++
T Consensus        73 ~~~~~~~~~~i~v~d~~~   90 (214)
T 2fh5_B           73 DRFKSSARAVVFVVDSAA   90 (214)
T ss_dssp             HHHGGGEEEEEEEEETTT
T ss_pred             HHHHhhCCEEEEEEECCC
Confidence            223567899999999984

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=98.93  E-value=4.6e-10  Score=99.62  Aligned_cols=144  Identities=10%  Similarity=0.102  Sum_probs=74.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee----eEEe---eCCcEEEEEeCCCCcCCCCCchHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK----TTVL---KDGQVVNVIDTPGLFDSSAGSEFVGKE   96 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~----~~~~---~~~~~~~l~Dtpg~~~~~~~~~~~~~~   96 (231)
                      .+|+|+|.+|||||||+|.+++...........+.+......    ....   ..+..+.++||||........    . 
T Consensus        42 ~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~----~-  116 (535)
T 3dpu_A           42 IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASH----Q-  116 (535)
T ss_dssp             EEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTC----H-
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHH----H-
Confidence            799999999999999999999976321101111111111000    0111   125678999999954422211    1 


Q ss_pred             HHHHHhhhcCCccEEEEEEECCCCCCHHHHH------hcCCCCcHHHHHHHHHhhH------HHHHhhcc----chhhhh
Q 038053           97 IVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA------ANGGQPYTDEFLAELKRGA------TELRDQQA----EVDSLK  160 (231)
Q Consensus        97 ~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~------~~l~~~~~----~i~~is  160 (231)
                        .    .+..+|++++|+|+++ .......      .....|.+ .+.|++|...      ..+.....    +++.+|
T Consensus       117 --~----~l~~~d~ii~V~D~s~-~~~~~~~~~~l~~~~~~~pvi-lV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vS  188 (535)
T 3dpu_A          117 --F----FMTRSSVYMLLLDSRT-DSNKHYWLRHIEKYGGKSPVI-VVMNKIDENPSYNIEQKKINERFPAIENRFHRIS  188 (535)
T ss_dssp             --H----HHHSSEEEEEEECGGG-GGGHHHHHHHHHHHSSSCCEE-EEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECC
T ss_pred             --H----HccCCcEEEEEEeCCC-chhHHHHHHHHHHhCCCCCEE-EEEECCCcccccccCHHHHHHHHHhcCCceEEEe
Confidence              1    1235799999999973 2222111      22234443 3445544210      22332222    578899


Q ss_pred             hhhHhhHHHHHHHHHHHHHH
Q 038053          161 EYSKQEISKLMGQMQESYED  180 (231)
Q Consensus       161 ~~~~~~i~~l~~~i~~~~~~  180 (231)
                      |.+|.|+++++..+.....+
T Consensus       189 A~~g~gi~eL~~~l~~~~~~  208 (535)
T 3dpu_A          189 CKNGDGVESIAKSLKSAVLH  208 (535)
T ss_dssp             C-----CTTHHHHHHHHHTC
T ss_pred             cCcccCHHHHHHHHHHHHhc
Confidence            99999999999998876543

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=98.93  E-value=2.2e-09  Score=82.42  Aligned_cols=142  Identities=18%  Similarity=0.175  Sum_probs=73.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCc--EEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+|+|.+|||||||+|.++|...... ...++++.+........ .+.  .+.++||+|.....   ..    +.   
T Consensus         7 ~kv~lvG~~~vGKSsL~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~l~~~Dt~~~~~~~---~~----~~---   74 (192)
T 2cjw_A            7 YRVVLIGEQGVGKSTLANIFAGVHDSMD-SDXEVLGEDTYERTLMV-DGESATIILLDMWENKGEN---EW----LH---   74 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEE-TTEEEEEEEECCCCC-------CT----TG---
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCcCCcC-ccccccceeEEEEEEEE-CCeEEEEEEEEeccCcchh---hh----HH---
Confidence            6899999999999999999997432111 11111211211122222 443  44678999854310   00    00   


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH--------h--cCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------A--NGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKE  161 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~--~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~  161 (231)
                      ...+..+|++++|+|.++.-+.....        .  ....|++ .+.++.+..         ...+....+ +++.+||
T Consensus        75 ~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~pii-lV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA  153 (192)
T 2cjw_A           75 DHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII-LVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSA  153 (192)
T ss_dssp             GGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEE-EEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBT
T ss_pred             HhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEE-EEEechhhhccccccHHHHHHHHHHhCCceEEecc
Confidence            11123468999999998532221111        1  1233333 222332210         011211222 5677899


Q ss_pred             hhHhhHHHHHHHHHHHH
Q 038053          162 YSKQEISKLMGQMQESY  178 (231)
Q Consensus       162 ~~~~~i~~l~~~i~~~~  178 (231)
                      ++|.|+++++..+....
T Consensus       154 ~~g~~v~~lf~~l~~~~  170 (192)
T 2cjw_A          154 AVQHNVKELFEGIVRQV  170 (192)
T ss_dssp             TTTBSHHHHHHHHHHHH
T ss_pred             ccCCCHHHHHHHHHHHH
Confidence            99999999998877643

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=98.93  E-value=2.8e-09  Score=95.86  Aligned_cols=85  Identities=18%  Similarity=0.217  Sum_probs=62.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCcccccc-----------------------------CCCCcceeeeeeeEEeeCCc
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKAFKASA-----------------------------DSSGVTKTCEMKTTVLKDGQ   73 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~-----------------------------~~~~~t~~~~~~~~~~~~~~   73 (231)
                      ..+|+++|.+|+|||||+|.|++........                             ...|+|.+........ .+.
T Consensus       167 ~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~-~~~  245 (611)
T 3izq_1          167 HLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-HRA  245 (611)
T ss_dssp             CCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC-SSC
T ss_pred             ceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec-CCc
Confidence            3799999999999999999999874322110                             0145666655555555 677


Q ss_pred             EEEEEeCCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCC
Q 038053           74 VVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRS  119 (231)
Q Consensus        74 ~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~  119 (231)
                      .+.++||||...           +.......+..+|++++|+|+++
T Consensus       246 ~~~iiDTPG~e~-----------f~~~~~~~~~~aD~~llVVDa~~  280 (611)
T 3izq_1          246 NFTIVDAPGHRD-----------FVPNAIMGISQADMAILCVDCST  280 (611)
T ss_dssp             EEEEEECCSSSC-----------HHHHHTTTSSCCSEEEEEEECSH
T ss_pred             eEEEEECCCCcc-----------cHHHHHHHHhhcCceEEEEECCC
Confidence            899999999754           33444556688999999999984

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=98.92  E-value=6.5e-11  Score=105.98  Aligned_cols=78  Identities=24%  Similarity=0.147  Sum_probs=56.3

Q ss_pred             CCCCC--CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee----EEeeCCcEE
Q 038053            2 SSGMG--ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT----TVLKDGQVV   75 (231)
Q Consensus         2 ~~~~~--~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~   75 (231)
                      ++.|+  +.++++++++++++|  ..++|+|+||||||||+++|+|...+.    .|.+..+.....    ... .....
T Consensus       346 ~~~y~~~~~~~l~~isl~i~~G--~~~~ivG~sGsGKSTll~~l~g~~~p~----~G~i~~~g~~~~~~~~~~~-r~~i~  418 (578)
T 4a82_A          346 SFQYNDNEAPILKDINLSIEKG--ETVAFVGMSGGGKSTLINLIPRFYDVT----SGQILIDGHNIKDFLTGSL-RNQIG  418 (578)
T ss_dssp             EECSCSSSCCSEEEEEEEECTT--CEEEEECSTTSSHHHHHTTTTTSSCCS----EEEEEETTEEGGGSCHHHH-HHTEE
T ss_pred             EEEcCCCCCcceeeeEEEECCC--CEEEEECCCCChHHHHHHHHhcCCCCC----CcEEEECCEEhhhCCHHHH-hhheE
Confidence            45675  457999999999999  999999999999999999999998743    333332211100    001 23578


Q ss_pred             EEEeCCCCcCC
Q 038053           76 NVIDTPGLFDS   86 (231)
Q Consensus        76 ~l~Dtpg~~~~   86 (231)
                      +++|.|.+++.
T Consensus       419 ~v~Q~~~l~~~  429 (578)
T 4a82_A          419 LVQQDNILFSD  429 (578)
T ss_dssp             EECSSCCCCSS
T ss_pred             EEeCCCccCcc
Confidence            88999988764

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=98.90  E-value=1.6e-09  Score=96.19  Aligned_cols=26  Identities=19%  Similarity=0.270  Sum_probs=24.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAF   49 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~   49 (231)
                      .+|+|+|.+|+|||||+|.|+|....
T Consensus        66 ~~V~vvG~~n~GKSTLIN~Llg~~~~   91 (550)
T 2qpt_A           66 PMVLVAGQYSTGKTSFIQYLLEQEVP   91 (550)
T ss_dssp             CEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCccc
Confidence            79999999999999999999998753

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.90  E-value=8.3e-11  Score=105.43  Aligned_cols=77  Identities=21%  Similarity=0.117  Sum_probs=55.3

Q ss_pred             CCCC--CCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee----eEEeeCCcEE
Q 038053            2 SSGM--GERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK----TTVLKDGQVV   75 (231)
Q Consensus         2 ~~~~--~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~----~~~~~~~~~~   75 (231)
                      ++.|  +..+++++++|++++|  ..++|+|+||||||||+++|+|...+..    |.+..+....    .... .....
T Consensus       348 ~~~y~~~~~~~l~~isl~i~~G--e~~~ivG~sGsGKSTll~~l~g~~~~~~----G~i~i~g~~i~~~~~~~~-r~~i~  420 (587)
T 3qf4_A          348 EFRYFENTDPVLSGVNFSVKPG--SLVAVLGETGSGKSTLMNLIPRLIDPER----GRVEVDELDVRTVKLKDL-RGHIS  420 (587)
T ss_dssp             EECSSSSSCCSEEEEEEEECTT--CEEEEECSSSSSHHHHHHTTTTSSCCSE----EEEEESSSBGGGBCHHHH-HHHEE
T ss_pred             EEEcCCCCCcceeceEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCccCCC----cEEEECCEEcccCCHHHH-HhheE
Confidence            4567  3567999999999999  9999999999999999999999987433    3222221100    0001 34577


Q ss_pred             EEEeCCCCcC
Q 038053           76 NVIDTPGLFD   85 (231)
Q Consensus        76 ~l~Dtpg~~~   85 (231)
                      +++|.|.+++
T Consensus       421 ~v~Q~~~lf~  430 (587)
T 3qf4_A          421 AVPQETVLFS  430 (587)
T ss_dssp             EECSSCCCCS
T ss_pred             EECCCCcCcC
Confidence            8888888764

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=98.90  E-value=6.9e-12  Score=112.39  Aligned_cols=85  Identities=20%  Similarity=0.173  Sum_probs=38.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCccccc-----------------------------cCCCCcceeeeeeeEEeeCCc
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKAFKAS-----------------------------ADSSGVTKTCEMKTTVLKDGQ   73 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~~~~~   73 (231)
                      ..+|+++|.+|+|||||+|.|++.......                             ....++|.+........ .+.
T Consensus       177 ~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~-~~~  255 (592)
T 3mca_A          177 VVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES-DKK  255 (592)
T ss_dssp             EEEEEEECCSSSTHHHHHHHHHHHHHCC----------------------------------------------------
T ss_pred             ccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe-CCe
Confidence            368999999999999999999753211100                             01235565554444444 567


Q ss_pred             EEEEEeCCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCC
Q 038053           74 VVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRS  119 (231)
Q Consensus        74 ~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~  119 (231)
                      .+.++||||..+...           .+...+..+|++++|+|+++
T Consensus       256 ~i~iiDTPGh~~f~~-----------~~~~~~~~aD~alLVVDa~~  290 (592)
T 3mca_A          256 IYEIGDAPGHRDFIS-----------GMIAGASSADFAVLVVDSSQ  290 (592)
T ss_dssp             ---CCEEESSSEEEE-----------ECCC-------CCSEEEEEE
T ss_pred             EEEEEECCChHHHHH-----------HHHHHHhhCCEEEEEEECCC
Confidence            888999999764211           01123356899999999974

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=98.90  E-value=6.5e-10  Score=84.99  Aligned_cols=80  Identities=11%  Similarity=0.177  Sum_probs=50.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccC-CCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASAD-SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      .+|+++|.+|||||||+|.|++......... .++.+..       . ....+.++||||.......   +    ..++.
T Consensus        49 ~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~-------~-~~~~~~l~Dt~G~~~~~~~---~----~~~~~  113 (193)
T 2ged_A           49 PSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD-------Y-DGSGVTLVDFPGHVKLRYK---L----SDYLK  113 (193)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHSSCC------------C-------C-CCTTCSEEEETTCCBSSCC---H----HHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeee-------e-cCCeEEEEECCCCchHHHH---H----HHHHH
Confidence            7999999999999999999998764221111 1111111       1 3456678999998654321   1    12223


Q ss_pred             hhcCCccEEEEEEECC
Q 038053          103 LAKGGIHAVLVVFSVR  118 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~  118 (231)
                      .....+|++++|+|++
T Consensus       114 ~~~~~~~~~i~v~d~~  129 (193)
T 2ged_A          114 TRAKFVKGLIFMVDST  129 (193)
T ss_dssp             HHGGGEEEEEEEEETT
T ss_pred             hhcccCCEEEEEEECC
Confidence            3335679999999987

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=98.89  E-value=9.2e-09  Score=93.77  Aligned_cols=93  Identities=27%  Similarity=0.401  Sum_probs=57.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHh---CCCcccccc-------C------CCCcceeeeeeeEEeeCCcEEEEEeCCCCcCC
Q 038053           23 KRTVVLLGRTGNGKSATGNSIL---GRKAFKASA-------D------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDS   86 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~---g~~~~~~~~-------~------~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~   86 (231)
                      ..+|+|+|.+|+|||||+|.|+   |........       +      ..+.|.........+ .+..+.++||||..+.
T Consensus        12 ~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~-~~~~i~liDTPG~~df   90 (691)
T 1dar_A           12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW-KDHRINIIDTPGHVDF   90 (691)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEE-TTEEEEEECCCSSTTC
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEE-CCeEEEEEECcCccch
Confidence            3789999999999999999998   322110000       0      223444444444445 6788999999998652


Q ss_pred             CCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH
Q 038053           87 SAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA  127 (231)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~  127 (231)
                             ..+...    .+..+|.+++|+|++++.......
T Consensus        91 -------~~~~~~----~l~~aD~~ilVvDa~~g~~~~t~~  120 (691)
T 1dar_A           91 -------TIEVER----SMRVLDGAIVVFDSSQGVEPQSET  120 (691)
T ss_dssp             -------HHHHHH----HHHHCSEEEEEEETTTCSCHHHHH
T ss_pred             -------HHHHHH----HHHHCCEEEEEEECCCCcchhhHH
Confidence                   122222    234579999999998777765543

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=98.88  E-value=1.7e-08  Score=95.39  Aligned_cols=91  Identities=16%  Similarity=0.162  Sum_probs=57.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCcccc--------------ccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCC
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKAFKA--------------SADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSA   88 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~   88 (231)
                      ..+|+++|.+|+|||||++.|++......              .....++|.+........ .+..+.++||||..+   
T Consensus       296 ~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~-~~~kI~IIDTPGHed---  371 (1289)
T 3avx_A          296 HVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT-PTRHYAHVDCPGHAD---  371 (1289)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEEC-SSCEEEEEECCCHHH---
T ss_pred             eeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcC-CCEEEEEEECCChHH---
Confidence            37899999999999999999987421000              001234444432222333 567889999999543   


Q ss_pred             CchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHH
Q 038053           89 GSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEE  125 (231)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~  125 (231)
                              +.......+..+|++++|+|++++...+.
T Consensus       372 --------F~~~mi~gas~AD~aILVVDAtdGv~~QT  400 (1289)
T 3avx_A          372 --------YVKNMITGAAQMDGAILVVAATDGPMPQT  400 (1289)
T ss_dssp             --------HHHHHHHTSCCCSEEEEEEETTTCSCTTH
T ss_pred             --------HHHHHHHHHhhCCEEEEEEcCCccCcHHH
Confidence                    33334455678999999999987655444

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.87  E-value=4.8e-10  Score=96.02  Aligned_cols=75  Identities=23%  Similarity=0.173  Sum_probs=49.8

Q ss_pred             cccCCCcccCCCCCCce--------------------EEEEEcCCCCCHHHHHHHHhCCCccccccC-CCCcceeeeeee
Q 038053            8 RVIDGDWKPTSSSNGKR--------------------TVVLLGRTGNGKSATGNSILGRKAFKASAD-SSGVTKTCEMKT   66 (231)
Q Consensus         8 ~~~~~~~~~~i~~g~~~--------------------~i~lvG~~g~GKSTLin~l~g~~~~~~~~~-~~~~t~~~~~~~   66 (231)
                      ..+++++++.+++|  .                    .++|+|+||||||||+|+|+|...+..|.. .++..... ...
T Consensus        36 ~~~l~~is~~i~~G--e~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~-~~~  112 (413)
T 1tq4_A           36 QEILNLIELRMRAG--NIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTM-ERH  112 (413)
T ss_dssp             HHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----C-CCE
T ss_pred             HHHhhhccceecCC--CCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecce-eEE
Confidence            45788999999999  7                    999999999999999999999876433321 11111100 011


Q ss_pred             EEe-eCCcEEEEEeCCCCcC
Q 038053           67 TVL-KDGQVVNVIDTPGLFD   85 (231)
Q Consensus        67 ~~~-~~~~~~~l~Dtpg~~~   85 (231)
                      ... .....+.+.|+||+..
T Consensus       113 v~q~~~~~~ltv~D~~g~~~  132 (413)
T 1tq4_A          113 PYKHPNIPNVVFWDLPGIGS  132 (413)
T ss_dssp             EEECSSCTTEEEEECCCGGG
T ss_pred             eccccccCCeeehHhhcccc
Confidence            111 1123567899999864

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.87  E-value=3e-09  Score=82.94  Aligned_cols=82  Identities=12%  Similarity=0.206  Sum_probs=52.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      ..+|+|+|++|+|||||+|.|++....... .....+.....      ....+.++||||.....       .....++.
T Consensus        12 ~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~-~~~~~~~~~~~------~~~~~~l~Dt~G~~~~~-------~~~~~~~~   77 (218)
T 1nrj_B           12 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTV-VSQEPLSAADY------DGSGVTLVDFPGHVKLR-------YKLSDYLK   77 (218)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSSCCCBC-CCSSCEEETTG------GGSSCEEEECCCCGGGT-------HHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCCee-eecCceEEEEe------eCceEEEEECCCcHHHH-------HHHHHHHH
Confidence            379999999999999999999987642211 11111111111      34567799999986521       12223333


Q ss_pred             hhcCCccEEEEEEECC
Q 038053          103 LAKGGIHAVLVVFSVR  118 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~  118 (231)
                      .....+|++++|+|.+
T Consensus        78 ~~~~~~~~~i~v~D~~   93 (218)
T 1nrj_B           78 TRAKFVKGLIFMVDST   93 (218)
T ss_dssp             HHGGGEEEEEEEEETT
T ss_pred             hccccCCEEEEEEECC
Confidence            3334579999999997

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.83  E-value=9.4e-10  Score=90.65  Aligned_cols=63  Identities=27%  Similarity=0.304  Sum_probs=37.7

Q ss_pred             cCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCC-----C-CcceeeeeeeEEeeCCcEEEEEeCCCCcC
Q 038053           16 PTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADS-----S-GVTKTCEMKTTVLKDGQVVNVIDTPGLFD   85 (231)
Q Consensus        16 ~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~-----~-~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~   85 (231)
                      +.+.+|  .+++|+|+||||||||+|+|+|...+.++...     + .+|+....  ...  . ..+++||||+..
T Consensus       168 ~~~~~G--~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~--~~~--~-~g~v~dtpg~~~  236 (307)
T 1t9h_A          168 IPHFQD--KTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVEL--IHT--S-GGLVADTPGFSS  236 (307)
T ss_dssp             GGGGTT--SEEEEEESHHHHHHHHHHHHCC-------------------CCCCCE--EEE--T-TEEEESSCSCSS
T ss_pred             HhhcCC--CEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHH--hhc--C-CEEEecCCCccc
Confidence            456678  89999999999999999999998765443211     1 22322111  111  1 468999999876

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=98.82  E-value=1.5e-09  Score=96.27  Aligned_cols=49  Identities=16%  Similarity=0.158  Sum_probs=42.3

Q ss_pred             CCCCCCCc-ccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccc
Q 038053            1 MSSGMGER-VIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKAS   52 (231)
Q Consensus         1 ~~~~~~~~-~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~   52 (231)
                      +++.|++. .++++++ .+.+|  .+++|+|+||||||||+++|+|...+..|
T Consensus        27 ls~~yg~~~~~l~~vs-~i~~G--e~~~LvG~NGaGKSTLlk~l~Gl~~p~~G   76 (538)
T 1yqt_A           27 CVHRYGVNAFVLYRLP-VVKEG--MVVGIVGPNGTGKSTAVKILAGQLIPNLC   76 (538)
T ss_dssp             EEEECSTTCCEEECCC-CCCTT--SEEEEECCTTSSHHHHHHHHHTSSCCCTT
T ss_pred             cEEEECCccccccCcC-cCCCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence            35778876 4899999 99999  99999999999999999999999875443

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.80  E-value=4.3e-09  Score=85.01  Aligned_cols=60  Identities=27%  Similarity=0.432  Sum_probs=39.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSA   88 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~   88 (231)
                      .+++++|.||+|||||+|.|+|......+ ..+++|+..+...    .+..+.++||||+.....
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~-~~~g~T~~~~~~~----~~~~~~l~DtpG~~~~~~  159 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVG-AQPGITKGIQWFS----LENGVKILDTPGILYKNI  159 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEE----CTTSCEEESSCEECCCCC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccC-CCCCCccceEEEE----eCCCEEEEECCCcccCcC
Confidence            48999999999999999999998765443 3455665433211    245678999999987543

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=98.78  E-value=1.6e-08  Score=89.49  Aligned_cols=92  Identities=18%  Similarity=0.256  Sum_probs=58.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccc--------------c------CCCCcceeeeeeeEEeeCCcEEEEEeCCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKAS--------------A------DSSGVTKTCEMKTTVLKDGQVVNVIDTPGL   83 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~--------------~------~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~   83 (231)
                      .+|+|+|.+|+|||||+|.|++.......              .      ...++|.........+ .+..+.++||||.
T Consensus        14 ~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~liDTPG~   92 (529)
T 2h5e_A           14 RTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPY-HDCLVNLLDTPGH   92 (529)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEE-TTEEEEEECCCCS
T ss_pred             CEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEE-CCeEEEEEECCCC
Confidence            79999999999999999999864211100              0      0122333222333444 6788999999998


Q ss_pred             cCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH
Q 038053           84 FDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA  127 (231)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~  127 (231)
                      .+..       ..    ....+..+|.+++|+|++++.......
T Consensus        93 ~df~-------~~----~~~~l~~aD~~IlVvDa~~g~~~~t~~  125 (529)
T 2h5e_A           93 EDFS-------ED----TYRTLTAVDCCLMVIDAAKGVEDRTRK  125 (529)
T ss_dssp             TTCC-------HH----HHHGGGGCSEEEEEEETTTCSCHHHHH
T ss_pred             hhHH-------HH----HHHHHHHCCEEEEEEeCCccchHHHHH
Confidence            6532       11    223456789999999998777655543

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.78  E-value=2.5e-07  Score=83.16  Aligned_cols=43  Identities=21%  Similarity=0.373  Sum_probs=30.9

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038053          164 KQEISKLMGQMQESYEDQIKRITEMVESELKETTTRLEQQLAE  206 (231)
Q Consensus       164 ~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  206 (231)
                      ..|+..|...+...+..+++.-...+.+.++...+..+.+++.
T Consensus       292 ~~g~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~~~el~~  334 (608)
T 3szr_A          292 KATVPCLAEKLTSELITHICKSLPLLENQIKETHQRITEELQK  334 (608)
T ss_dssp             C---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            3577788888888888888777777777777777777777766

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=98.78  E-value=4.9e-10  Score=92.22  Aligned_cols=42  Identities=17%  Similarity=0.075  Sum_probs=37.2

Q ss_pred             CCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053            3 SGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus         3 ~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      +.|+ ..+|+++++++++|  .+++|+|+||||||||+++|+|..
T Consensus       109 ~~y~-~~vL~~vsl~i~~G--e~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          109 LITF-INALKLWLKGIPKK--NCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             HHHH-HHHHHHHHHTCTTC--SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEcC-hhhhccceEEecCC--CEEEEECCCCCcHHHHHHHHhhhc
Confidence            3444 56899999999999  999999999999999999999764

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=98.78  E-value=2e-09  Score=84.60  Aligned_cols=40  Identities=15%  Similarity=0.097  Sum_probs=25.0

Q ss_pred             CCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053            6 GERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus         6 ~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      ....-|++++|++++|  ..++|+|+||||||||+++|+|..
T Consensus         8 ~~~~~l~~isl~i~~G--~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A            8 HHHSSGLVPRGSMNNI--YPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             --------------CC--CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             cccccccCCceecCCC--CEEEEECCCCCCHHHHHHHHHhhC
Confidence            3455689999999999  999999999999999999999976

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=98.78  E-value=1.1e-08  Score=88.52  Aligned_cols=85  Identities=22%  Similarity=0.324  Sum_probs=53.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccc--------------c---------------cCCCCcceeeeeeeEEeeCCcE
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKA--------------S---------------ADSSGVTKTCEMKTTVLKDGQV   74 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~--------------~---------------~~~~~~t~~~~~~~~~~~~~~~   74 (231)
                      .+|+++|.+|+|||||+|.|++......              +               ....++|.+........ .+..
T Consensus         7 ~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~-~~~~   85 (435)
T 1jny_A            7 LNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET-KKYF   85 (435)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC-SSCE
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEec-CCeE
Confidence            7999999999999999999986411000              0               01234555544444444 6778


Q ss_pred             EEEEeCCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCC
Q 038053           75 VNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSR  120 (231)
Q Consensus        75 ~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~  120 (231)
                      +.++||||..+           +.......+..+|++++|+|++++
T Consensus        86 ~~iiDtpG~~~-----------f~~~~~~~~~~aD~~ilVvDa~~g  120 (435)
T 1jny_A           86 FTIIDAPGHRD-----------FVKNMITGASQADAAILVVSAKKG  120 (435)
T ss_dssp             EEECCCSSSTT-----------HHHHHHHTSSCCSEEEEEEECSTT
T ss_pred             EEEEECCCcHH-----------HHHHHHhhhhhcCEEEEEEECCCC
Confidence            99999999765           222233456789999999999865

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=98.75  E-value=3.3e-09  Score=95.17  Aligned_cols=48  Identities=15%  Similarity=0.160  Sum_probs=41.8

Q ss_pred             CCCCCCc-ccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccc
Q 038053            2 SSGMGER-VIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKAS   52 (231)
Q Consensus         2 ~~~~~~~-~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~   52 (231)
                      ++.|++. .++++++ .+.+|  .+++|+|+||||||||+++|+|...+..|
T Consensus        98 s~~yg~~~~~l~~vs-~i~~G--e~~~LiG~NGsGKSTLlkiL~Gll~p~~G  146 (607)
T 3bk7_A           98 VHRYGVNAFVLYRLP-IVKDG--MVVGIVGPNGTGKTTAVKILAGQLIPNLC  146 (607)
T ss_dssp             EEECSTTCCEEECCC-CCCTT--SEEEEECCTTSSHHHHHHHHTTSSCCCTT
T ss_pred             EEEECCCCeeeCCCC-CCCCC--CEEEEECCCCChHHHHHHHHhCCCCCCCC
Confidence            5678776 4899999 99999  99999999999999999999999875443

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=98.75  E-value=3.5e-09  Score=84.59  Aligned_cols=40  Identities=20%  Similarity=0.119  Sum_probs=25.4

Q ss_pred             CCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053            6 GERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus         6 ~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      ++..+|++++|++++|  .+|||+|+||||||||++.|.|..
T Consensus        10 ~~~~~l~~isl~i~~g--~iigI~G~~GsGKSTl~k~L~~~l   49 (245)
T 2jeo_A           10 GVDLGTENLYFQSMRP--FLIGVSGGTASGKSTVCEKIMELL   49 (245)
T ss_dssp             -------------CCS--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCceeecceeccCCCC--EEEEEECCCCCCHHHHHHHHHHHh
Confidence            5678999999999999  999999999999999999998854

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=98.75  E-value=1.5e-08  Score=92.45  Aligned_cols=93  Identities=27%  Similarity=0.401  Sum_probs=58.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhC---CCccccc-------cC------CCCcceeeeeeeEEeeCCcEEEEEeCCCCcCC
Q 038053           23 KRTVVLLGRTGNGKSATGNSILG---RKAFKAS-------AD------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDS   86 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g---~~~~~~~-------~~------~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~   86 (231)
                      ..+|+|+|.+|+|||||+|.|++   .......       .+      ..++|.........+ .+..+.++||||..+.
T Consensus        10 ~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG~~df   88 (693)
T 2xex_A           10 TRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAW-EGHRVNIIDTPGHVDF   88 (693)
T ss_dssp             EEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEE-TTEEEEEECCCCCSSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEE-CCeeEEEEECcCCcch
Confidence            37999999999999999999994   3211000       00      123444444444445 6788999999998763


Q ss_pred             CCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH
Q 038053           87 SAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA  127 (231)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~  127 (231)
                      .       .+...    .+..+|.+++|+|++++.+.....
T Consensus        89 ~-------~~~~~----~l~~aD~~llVvDa~~g~~~~~~~  118 (693)
T 2xex_A           89 T-------VEVER----SLRVLDGAVTVLDAQSGVEPQTET  118 (693)
T ss_dssp             C-------HHHHH----HHHHCSEEEEEEETTTBSCHHHHH
T ss_pred             H-------HHHHH----HHHHCCEEEEEECCCCCCcHHHHH
Confidence            2       12222    224479999999998777766544

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=98.73  E-value=3e-08  Score=86.29  Aligned_cols=85  Identities=20%  Similarity=0.243  Sum_probs=57.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccc--------------ccc---------------CCCCcceeeeeeeEEeeCCcE
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFK--------------ASA---------------DSSGVTKTCEMKTTVLKDGQV   74 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~--------------~~~---------------~~~~~t~~~~~~~~~~~~~~~   74 (231)
                      .+|+++|.+|+|||||+|.|++.....              .+.               ...++|.+........ .+..
T Consensus         8 ~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~-~~~~   86 (458)
T 1f60_A            8 INVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET-PKYQ   86 (458)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC-SSEE
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec-CCce
Confidence            689999999999999999998641000              000               0134555544444444 6678


Q ss_pred             EEEEeCCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCC
Q 038053           75 VNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSR  120 (231)
Q Consensus        75 ~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~  120 (231)
                      +.++||||..+           +.......+..+|++++|+|++++
T Consensus        87 ~~iiDtPGh~~-----------f~~~~~~~~~~aD~~ilVvda~~g  121 (458)
T 1f60_A           87 VTVIDAPGHRD-----------FIKNMITGTSQADCAILIIAGGVG  121 (458)
T ss_dssp             EEEEECCCCTT-----------HHHHHHHSSSCCSEEEEEEECSHH
T ss_pred             EEEEECCCcHH-----------HHHHHHhhhhhCCEEEEEEeCCcC
Confidence            99999999543           223334456789999999999854

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=98.71  E-value=6.7e-09  Score=93.23  Aligned_cols=70  Identities=13%  Similarity=-0.032  Sum_probs=49.7

Q ss_pred             CCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCC
Q 038053            3 SGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPG   82 (231)
Q Consensus         3 ~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg   82 (231)
                      +.|++. .|+.+++++.+|  .+++|+|+||||||||+++|+|...+    ..|.+..          .....++++.+.
T Consensus       365 ~~~~~~-~l~~~~~~v~~G--ei~~i~G~NGsGKSTLlk~l~Gl~~p----~~G~I~~----------~~~i~~v~Q~~~  427 (607)
T 3bk7_A          365 KDYGSF-KLEVEPGEIRKG--EVIGIVGPNGIGKTTFVKMLAGVEEP----TEGKVEW----------DLTVAYKPQYIK  427 (607)
T ss_dssp             EECSSC-EEEECCEEEETT--CEEEEECCTTSSHHHHHHHHHTSSCC----SBSCCCC----------CCCEEEECSSCC
T ss_pred             EEecce-EEEecccccCCC--CEEEEECCCCCCHHHHHHHHhcCCCC----CceEEEE----------eeEEEEEecCcc
Confidence            345543 466777788999  99999999999999999999999874    3333332          234566777776


Q ss_pred             CcCCCCC
Q 038053           83 LFDSSAG   89 (231)
Q Consensus        83 ~~~~~~~   89 (231)
                      .....++
T Consensus       428 ~~~~~tv  434 (607)
T 3bk7_A          428 AEYEGTV  434 (607)
T ss_dssp             CCCSSBH
T ss_pred             CCCCCcH
Confidence            5444444

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=98.70  E-value=1.4e-09  Score=105.32  Aligned_cols=79  Identities=20%  Similarity=0.084  Sum_probs=56.2

Q ss_pred             CCCCCC---cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee---EEeeCCcEE
Q 038053            2 SSGMGE---RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT---TVLKDGQVV   75 (231)
Q Consensus         2 ~~~~~~---~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~   75 (231)
                      ++.|++   .++|++++|++++|  .+++|+|+||||||||+++|+|...+    ..|.+..+.....   .........
T Consensus       394 ~~~y~~~~~~~vL~~isl~i~~G--~~~~ivG~sGsGKSTl~~ll~g~~~~----~~G~i~i~g~~i~~~~~~~~r~~i~  467 (1284)
T 3g5u_A          394 HFSYPSRKEVQILKGLNLKVKSG--QTVALVGNSGCGKSTTVQLMQRLYDP----LDGMVSIDGQDIRTINVRYLREIIG  467 (1284)
T ss_dssp             EECCSSTTSCCSEEEEEEEECTT--CEEEEECCSSSSHHHHHHHTTTSSCC----SEEEEEETTEEGGGSCHHHHHHHEE
T ss_pred             EEEcCCCCCCcceecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CCeEEEECCEEHHhCCHHHHHhheE
Confidence            456753   46999999999999  99999999999999999999999874    3333332221100   000023478


Q ss_pred             EEEeCCCCcCC
Q 038053           76 NVIDTPGLFDS   86 (231)
Q Consensus        76 ~l~Dtpg~~~~   86 (231)
                      ++.|.|.+++.
T Consensus       468 ~v~Q~~~l~~~  478 (1284)
T 3g5u_A          468 VVSQEPVLFAT  478 (1284)
T ss_dssp             EECSSCCCCSS
T ss_pred             EEcCCCccCCc
Confidence            89999988764

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.69  E-value=2.1e-09  Score=100.49  Aligned_cols=46  Identities=20%  Similarity=0.146  Sum_probs=41.5

Q ss_pred             CCCCCC--cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053            2 SSGMGE--RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF   49 (231)
Q Consensus         2 ~~~~~~--~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~   49 (231)
                      ++.|++  +++|++++|++.+|  .+++|+|+||||||||+++|+|...+
T Consensus       678 s~~Y~g~~~~iL~dVSl~I~~G--eivaIiGpNGSGKSTLLklLaGll~P  725 (986)
T 2iw3_A          678 EFQYPGTSKPQITDINFQCSLS--SRIAVIGPNGAGKSTLINVLTGELLP  725 (986)
T ss_dssp             EECCTTCSSCSEEEEEEEEETT--CEEEECSCCCHHHHHHHHHHTTSSCC
T ss_pred             EEEeCCCCceeeeccEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            456754  67899999999999  99999999999999999999999874

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=98.69  E-value=4.7e-08  Score=86.81  Aligned_cols=89  Identities=22%  Similarity=0.362  Sum_probs=57.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh---CCCcccc----c-------------cCCCCcceeeeeeeEEeeCCcEEEEEeCCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSIL---GRKAFKA----S-------------ADSSGVTKTCEMKTTVLKDGQVVNVIDTPGL   83 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~---g~~~~~~----~-------------~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~   83 (231)
                      .+|||||..++|||||.-+|+   |.....+    +             -..-++|.......+.| ++..+.|+||||.
T Consensus        32 RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDTPGH  110 (548)
T 3vqt_A           32 RTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPY-RDRVVNLLDTPGH  110 (548)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEE-TTEEEEEECCCCG
T ss_pred             ceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEE-CCEEEEEEeCCCc
Confidence            789999999999999998885   2211000    0             01224455555555667 8899999999998


Q ss_pred             cCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHH
Q 038053           84 FDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQE  124 (231)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~  124 (231)
                      .+..       .++.    .++.-+|.+++|||+..++..+
T Consensus       111 vDF~-------~Ev~----raL~~~DgAvlVvda~~GV~~q  140 (548)
T 3vqt_A          111 QDFS-------EDTY----RVLTAVDSALVVIDAAKGVEAQ  140 (548)
T ss_dssp             GGCS-------HHHH----HHHHSCSEEEEEEETTTBSCHH
T ss_pred             HHHH-------HHHH----HHHHhcCceEEEeecCCCcccc
Confidence            7643       2333    3445669999999998444433

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=98.68  E-value=1.9e-09  Score=104.65  Aligned_cols=78  Identities=19%  Similarity=0.127  Sum_probs=57.5

Q ss_pred             CCCCC---CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee----eEEeeCCcE
Q 038053            2 SSGMG---ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK----TTVLKDGQV   74 (231)
Q Consensus         2 ~~~~~---~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~----~~~~~~~~~   74 (231)
                      +.+|.   +.++|+|++|++++|  .+|||||++|||||||+++|++...    +..|.+..+...-    ...+ +...
T Consensus      1083 sf~Y~~~~~~~VL~~isl~I~~G--e~vaIVG~SGsGKSTL~~lL~rl~~----p~~G~I~iDG~di~~i~~~~l-R~~i 1155 (1321)
T 4f4c_A         1083 RFAYPERPEIEILKGLSFSVEPG--QTLALVGPSGCGKSTVVALLERFYD----TLGGEIFIDGSEIKTLNPEHT-RSQI 1155 (1321)
T ss_dssp             EECCTTSCSSCSEEEEEEEECTT--CEEEEECSTTSSTTSHHHHHTTSSC----CSSSEEEETTEETTTBCHHHH-HTTE
T ss_pred             EEeCCCCCCCccccceeEEECCC--CEEEEECCCCChHHHHHHHHhcCcc----CCCCEEEECCEEhhhCCHHHH-Hhhe
Confidence            44664   346899999999999  9999999999999999999999987    4444444432211    0111 4567


Q ss_pred             EEEEeCCCCcCC
Q 038053           75 VNVIDTPGLFDS   86 (231)
Q Consensus        75 ~~l~Dtpg~~~~   86 (231)
                      .+++|.|-++++
T Consensus      1156 ~~V~Qdp~LF~g 1167 (1321)
T 4f4c_A         1156 AIVSQEPTLFDC 1167 (1321)
T ss_dssp             EEECSSCCCCSE
T ss_pred             EEECCCCEeeCc
Confidence            888998887653

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=98.66  E-value=9.7e-09  Score=91.05  Aligned_cols=64  Identities=11%  Similarity=-0.059  Sum_probs=46.1

Q ss_pred             cCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCC
Q 038053           10 IDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAG   89 (231)
Q Consensus        10 ~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~   89 (231)
                      .|+++++++.+|  .+++|+|+||||||||+++|+|...+    ..|.+..          .....++++.+......++
T Consensus       301 ~l~~~~~~i~~G--e~~~i~G~NGsGKSTLlk~l~Gl~~p----~~G~i~~----------~~~i~~v~Q~~~~~~~~tv  364 (538)
T 1yqt_A          301 RLEVEPGEIKKG--EVIGIVGPNGIGKTTFVKMLAGVEEP----TEGKIEW----------DLTVAYKPQYIKADYEGTV  364 (538)
T ss_dssp             EEEECCEEEETT--CEEEEECCTTSSHHHHHHHHHTSSCC----SBCCCCC----------CCCEEEECSSCCCCCSSBH
T ss_pred             EEEeCccccCCC--CEEEEECCCCCCHHHHHHHHhCCCCC----CCeEEEE----------CceEEEEecCCcCCCCCcH
Confidence            466677778899  99999999999999999999999874    3333332          2235567776655443343

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.65  E-value=2.8e-09  Score=99.59  Aligned_cols=42  Identities=21%  Similarity=0.242  Sum_probs=39.6

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhC
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILG   45 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g   45 (231)
                      ++.|+++.+|++++|++.+|  .+++|+|+||||||||+++|+|
T Consensus       442 s~~yg~~~iL~~vsl~I~~G--e~v~LiGpNGsGKSTLLk~Lag  483 (986)
T 2iw3_A          442 SLAYGAKILLNKTQLRLKRA--RRYGICGPNGCGKSTLMRAIAN  483 (986)
T ss_dssp             EEEETTEEEEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCEEeEecceEEEcCC--CEEEEECCCCCCHHHHHHHHhC
Confidence            56788899999999999999  9999999999999999999994

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.65  E-value=2.4e-08  Score=82.23  Aligned_cols=58  Identities=26%  Similarity=0.288  Sum_probs=37.7

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCC----CC--cceeeeeeeEEeeCCcEEEEEeCCCCc
Q 038053           20 SNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADS----SG--VTKTCEMKTTVLKDGQVVNVIDTPGLF   84 (231)
Q Consensus        20 ~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~----~~--~t~~~~~~~~~~~~~~~~~l~Dtpg~~   84 (231)
                      .|  .+++|+|+||||||||+|+|+ ...+.+|...    .|  +|+...  ...  .....+++|+||+.
T Consensus       164 ~G--~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~--~~~--~~~~g~v~d~pg~~  227 (302)
T 2yv5_A          164 EG--FICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR--LIP--FGKGSFVGDTPGFS  227 (302)
T ss_dssp             TT--CEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE--EEE--ETTTEEEESSCCCS
T ss_pred             cC--cEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE--EEE--cCCCcEEEECcCcC
Confidence            46  799999999999999999999 7664433211    11  222111  111  12457899999986

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=98.64  E-value=9.2e-09  Score=99.61  Aligned_cols=80  Identities=20%  Similarity=0.139  Sum_probs=54.6

Q ss_pred             CCCCCC---cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcccccc-CCCCcceeeeeeeEEeeCCcEEEE
Q 038053            2 SSGMGE---RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASA-DSSGVTKTCEMKTTVLKDGQVVNV   77 (231)
Q Consensus         2 ~~~~~~---~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l   77 (231)
                      ++.|++   .+++++++|++++|  .++||+|+||||||||+++|+|...+..|. ...+.... ....... .....++
T Consensus      1037 ~~~y~~~~~~~~l~~vsl~i~~G--e~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~-~~~~~~~-r~~i~~v 1112 (1284)
T 3g5u_A         1037 VFNYPTRPSIPVLQGLSLEVKKG--QTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIK-QLNVQWL-RAQLGIV 1112 (1284)
T ss_dssp             EBCCSCGGGCCSBSSCCEEECSS--SEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTT-SSCHHHH-TTSCEEE
T ss_pred             EEECCCCCCCeeecceeEEEcCC--CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcc-cCCHHHH-HhceEEE
Confidence            456653   36899999999999  999999999999999999999998754331 11111110 0000111 4557788


Q ss_pred             EeCCCCcC
Q 038053           78 IDTPGLFD   85 (231)
Q Consensus        78 ~Dtpg~~~   85 (231)
                      ++.|-+++
T Consensus      1113 ~Q~~~l~~ 1120 (1284)
T 3g5u_A         1113 SQEPILFD 1120 (1284)
T ss_dssp             ESSCCCCS
T ss_pred             CCCCcccc
Confidence            88886654

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=98.64  E-value=1.3e-08  Score=83.86  Aligned_cols=62  Identities=26%  Similarity=0.220  Sum_probs=39.5

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCC-----C-CcceeeeeeeEEeeCCcEEEEEeCCCCcCC
Q 038053           19 SSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADS-----S-GVTKTCEMKTTVLKDGQVVNVIDTPGLFDS   86 (231)
Q Consensus        19 ~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~-----~-~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~   86 (231)
                      ..|  ..++|+|+||||||||+|+|+|...+.+|...     + .+|....  ...  .....+++|+||+...
T Consensus       167 l~g--eiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~--~~~--~~~~g~v~q~p~~~~~  234 (301)
T 1u0l_A          167 LKG--KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQ--LLK--FDFGGYVVDTPGFANL  234 (301)
T ss_dssp             HSS--SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCC--EEE--CTTSCEEESSCSSTTC
T ss_pred             hcC--CeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeE--EEE--cCCCCEEEECcCCCcc
Confidence            346  79999999999999999999999875444211     1 1222111  111  2345789999998653

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=98.63  E-value=1.3e-08  Score=79.17  Aligned_cols=40  Identities=23%  Similarity=0.248  Sum_probs=25.6

Q ss_pred             CCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053            5 MGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus         5 ~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      -+..+++++  .++++|  ..++|+|+||||||||+|+|+|...
T Consensus         6 ~~~~~~~~~--~~i~~G--ei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A            6 PDTKPTARG--QPAAVG--RVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             ---------------CC--CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCcCCCC--CCCCCC--CEEEEECCCCCCHHHHHHHHHhhCC
Confidence            355677777  799999  9999999999999999999999864

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=98.62  E-value=3.8e-08  Score=78.94  Aligned_cols=26  Identities=27%  Similarity=0.374  Sum_probs=22.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh-----CCCcc
Q 038053           24 RTVVLLGRTGNGKSATGNSIL-----GRKAF   49 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~-----g~~~~   49 (231)
                      ..++++|++|||||||++.|+     |....
T Consensus        15 ~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~   45 (262)
T 1yrb_A           15 MIVVFVGTAGSGKTTLTGEFGRYLEDNYKVA   45 (262)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHTTTSCEE
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHHCCCeEE
Confidence            689999999999999999998     76543

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=98.61  E-value=4.1e-08  Score=85.63  Aligned_cols=86  Identities=21%  Similarity=0.244  Sum_probs=48.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCccc--------------cc---------------cCCCCcceeeeeeeEEeeCCc
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKAFK--------------AS---------------ADSSGVTKTCEMKTTVLKDGQ   73 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~--------------~~---------------~~~~~~t~~~~~~~~~~~~~~   73 (231)
                      ..+|+++|..|+|||||++.|++.....              .|               ....++|.+........ .+.
T Consensus        43 ~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~-~~~  121 (467)
T 1r5b_A           43 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET-EHR  121 (467)
T ss_dssp             EEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC-SSE
T ss_pred             eeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec-CCe
Confidence            3689999999999999999997421100              00               00234555444434444 677


Q ss_pred             EEEEEeCCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCC
Q 038053           74 VVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSR  120 (231)
Q Consensus        74 ~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~  120 (231)
                      .+.++||||..+.           ...+...+..+|++++|+|++++
T Consensus       122 ~~~iiDtPGh~~f-----------~~~~~~~~~~aD~~ilVvDa~~g  157 (467)
T 1r5b_A          122 RFSLLDAPGHKGY-----------VTNMINGASQADIGVLVISARRG  157 (467)
T ss_dssp             EEEECCCCC----------------------TTSCSEEEEEEECSTT
T ss_pred             EEEEEECCCcHHH-----------HHHHHhhcccCCEEEEEEeCCcC
Confidence            8999999997542           22223345788999999999865

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=98.61  E-value=1.4e-08  Score=76.66  Aligned_cols=31  Identities=32%  Similarity=0.396  Sum_probs=27.9

Q ss_pred             CcccCCCCCCceEEEEEcCCCCCHHHHHHHHhC
Q 038053           13 DWKPTSSSNGKRTVVLLGRTGNGKSATGNSILG   45 (231)
Q Consensus        13 ~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g   45 (231)
                      +++|++++|  ..++|+|+||||||||++.+.+
T Consensus         1 ~vsl~i~~g--ei~~l~G~nGsGKSTl~~~~~~   31 (171)
T 4gp7_A            1 SMKLTIPEL--SLVVLIGSSGSGKSTFAKKHFK   31 (171)
T ss_dssp             CEEEEEESS--EEEEEECCTTSCHHHHHHHHSC
T ss_pred             CccccCCCC--EEEEEECCCCCCHHHHHHHHcc
Confidence            578999999  9999999999999999996553

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=98.60  E-value=1.5e-09  Score=84.77  Aligned_cols=42  Identities=21%  Similarity=0.289  Sum_probs=36.0

Q ss_pred             CCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcccc
Q 038053            3 SGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKA   51 (231)
Q Consensus         3 ~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~   51 (231)
                      +.|+++.+++++    ++|  .+++|+|+||||||||+++|+|. .+..
T Consensus         8 k~~g~~~~l~~i----~~G--e~~~liG~nGsGKSTLl~~l~Gl-~p~~   49 (208)
T 3b85_A            8 KTLGQKHYVDAI----DTN--TIVFGLGPAGSGKTYLAMAKAVQ-ALQS   49 (208)
T ss_dssp             CSHHHHHHHHHH----HHC--SEEEEECCTTSSTTHHHHHHHHH-HHHT
T ss_pred             CCHhHHHHHHhc----cCC--CEEEEECCCCCCHHHHHHHHhcC-CCcC
Confidence            567778888885    678  89999999999999999999999 7433

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=98.59  E-value=2.1e-07  Score=84.93  Aligned_cols=91  Identities=24%  Similarity=0.337  Sum_probs=57.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCC---cccccc-------C------CCCcceeeeeeeEEeeCC-------cEEEEEeC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRK---AFKASA-------D------SSGVTKTCEMKTTVLKDG-------QVVNVIDT   80 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~---~~~~~~-------~------~~~~t~~~~~~~~~~~~~-------~~~~l~Dt   80 (231)
                      .+|+|+|..|+|||||++.|+...   ......       +      ..++|.........+ .+       ..+.++||
T Consensus        11 ~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~-~~~~~~~~~~~i~liDT   89 (704)
T 2rdo_7           11 RNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFW-SGMAKQYEPHRINIIDT   89 (704)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEE-CCccccCCceeEEEEeC
Confidence            789999999999999999996431   110000       0      123444333333444 33       78899999


Q ss_pred             CCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHH
Q 038053           81 PGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEE  126 (231)
Q Consensus        81 pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~  126 (231)
                      ||..+.       ..+.    ...+..+|.+++|+|++++......
T Consensus        90 PG~~df-------~~~~----~~~l~~aD~aIlVvDa~~gv~~qt~  124 (704)
T 2rdo_7           90 PGHVDF-------TIEV----ERSMRVLDGAVMVYCAVGGVQPQSE  124 (704)
T ss_pred             CCccch-------HHHH----HHHHHHCCEEEEEEeCCCCCcHHHH
Confidence            997652       1122    2333567999999999876655443

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=98.58  E-value=6.2e-08  Score=77.78  Aligned_cols=70  Identities=13%  Similarity=0.154  Sum_probs=39.8

Q ss_pred             CccEEEEEEECCCC--CCHHHHH----------hcCCCCcHHHHHHHHHhh-------HHHHHhhc-c-chhhhhhhhHh
Q 038053          107 GIHAVLVVFSVRSR--FSQEEEA----------ANGGQPYTDEFLAELKRG-------ATELRDQQ-A-EVDSLKEYSKQ  165 (231)
Q Consensus       107 ~~~~il~vvd~~~~--~~~~~~~----------~~~~~~~~~~~~~~~~~~-------~~~l~~~~-~-~i~~is~~~~~  165 (231)
                      .+|++++|+|+++.  .+.....          .....|++ .+.++.|..       ...+.... . +++.+||+++.
T Consensus       162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~pii-lV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g~  240 (255)
T 3c5h_A          162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIV-VVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNV  240 (255)
T ss_dssp             ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEE-EEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTTB
T ss_pred             cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEE-EEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCCC
Confidence            58999999999865  4433322          11233443 233333311       01222111 2 56779999999


Q ss_pred             hHHHHHHHHHHH
Q 038053          166 EISKLMGQMQES  177 (231)
Q Consensus       166 ~i~~l~~~i~~~  177 (231)
                      |+++++..+...
T Consensus       241 gv~elf~~l~~~  252 (255)
T 3c5h_A          241 NVDLAFSTLVQL  252 (255)
T ss_dssp             SHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            999998887654

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=98.57  E-value=1.9e-08  Score=97.68  Aligned_cols=78  Identities=21%  Similarity=0.158  Sum_probs=55.6

Q ss_pred             CCCCC---CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee---eEEeeCCcEE
Q 038053            2 SSGMG---ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK---TTVLKDGQVV   75 (231)
Q Consensus         2 ~~~~~---~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~   75 (231)
                      +..|.   +.++|+|+||++++|  ..++|||++|||||||+++|+|...+    ..|.+..+....   ...+......
T Consensus       422 sF~Y~~~~~~~vL~~isl~i~~G--~~vaivG~sGsGKSTll~ll~~~~~~----~~G~I~idG~~i~~~~~~~lr~~i~  495 (1321)
T 4f4c_A          422 HFTYPSRPDVPILRGMNLRVNAG--QTVALVGSSGCGKSTIISLLLRYYDV----LKGKITIDGVDVRDINLEFLRKNVA  495 (1321)
T ss_dssp             EECCSSSTTSCSEEEEEEEECTT--CEEEEEECSSSCHHHHHHHHTTSSCC----SEEEEEETTEETTTSCHHHHHHHEE
T ss_pred             eeeCCCCCCCceeeceEEeecCC--cEEEEEecCCCcHHHHHHHhcccccc----ccCcccCCCccchhccHHHHhhccc
Confidence            34553   467899999999999  99999999999999999999999884    333333322110   0000124578


Q ss_pred             EEEeCCCCcC
Q 038053           76 NVIDTPGLFD   85 (231)
Q Consensus        76 ~l~Dtpg~~~   85 (231)
                      ++.|.|-+++
T Consensus       496 ~v~Q~~~Lf~  505 (1321)
T 4f4c_A          496 VVSQEPALFN  505 (1321)
T ss_dssp             EECSSCCCCS
T ss_pred             ccCCcceeeC
Confidence            8889888765

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=98.56  E-value=2.4e-08  Score=88.45  Aligned_cols=37  Identities=16%  Similarity=0.168  Sum_probs=33.1

Q ss_pred             CCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053           11 DGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF   49 (231)
Q Consensus        11 ~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~   49 (231)
                      +...++++++|  .+++|+|+||||||||+++|+|...+
T Consensus       284 l~~~~~~i~~G--ei~~i~G~nGsGKSTLl~~l~Gl~~p  320 (538)
T 3ozx_A          284 LVVDNGEAKEG--EIIGILGPNGIGKTTFARILVGEITA  320 (538)
T ss_dssp             EEECCEEEETT--CEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             EEeccceECCC--CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            45567778999  99999999999999999999999874

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.56  E-value=5.3e-07  Score=79.05  Aligned_cols=97  Identities=15%  Similarity=0.196  Sum_probs=57.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHh------CCCccccccCCCC---------------cceeeee-------------ee
Q 038053           21 NGKRTVVLLGRTGNGKSATGNSIL------GRKAFKASADSSG---------------VTKTCEM-------------KT   66 (231)
Q Consensus        21 g~~~~i~lvG~~g~GKSTLin~l~------g~~~~~~~~~~~~---------------~t~~~~~-------------~~   66 (231)
                      ..+.+|+|+|++|||||||++.|+      |........+...               ++.....             ..
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~  178 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK  178 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence            344799999999999999999999      7654332211100               0000000             00


Q ss_pred             EEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCH
Q 038053           67 TVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQ  123 (231)
Q Consensus        67 ~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~  123 (231)
                      ..+ .+..++|+||||....   ...+..++..... . -.+|.+++|+|+..+.+.
T Consensus       179 ~~~-~~~DvvIIDTpG~~~~---~~~l~~el~~~~~-~-i~pd~vllVvDa~~g~~~  229 (504)
T 2j37_W          179 FKN-ENFEIIIVDTSGRHKQ---EDSLFEEMLQVAN-A-IQPDNIVYVMDASIGQAC  229 (504)
T ss_dssp             HHH-TTCCEEEEEECCCCTT---CHHHHHHHHHHHH-H-HCCSEEEEEEETTCCTTH
T ss_pred             HHH-CCCcEEEEeCCCCccc---chhHHHHHHHHHh-h-hcCceEEEEEeccccccH
Confidence            011 4567899999998752   1333344433322 2 268999999999865543

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=98.55  E-value=9.1e-09  Score=86.32  Aligned_cols=46  Identities=13%  Similarity=0.043  Sum_probs=40.9

Q ss_pred             CCCCCC-CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053            1 MSSGMG-ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF   49 (231)
Q Consensus         1 ~~~~~~-~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~   49 (231)
                      +++.|+ +..+++++ +++.+|  .+++|+|+||||||||+++|+|...+
T Consensus        51 l~~~~~tg~~ald~l-l~i~~G--q~~gIiG~nGaGKTTLl~~I~g~~~~   97 (347)
T 2obl_A           51 IDQPFILGVRAIDGL-LTCGIG--QRIGIFAGSGVGKSTLLGMICNGASA   97 (347)
T ss_dssp             CCSEECCSCHHHHHH-SCEETT--CEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred             cceecCCCCEEEEee-eeecCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            356676 67789999 999999  99999999999999999999998764

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=98.53  E-value=1.9e-08  Score=86.93  Aligned_cols=46  Identities=13%  Similarity=0.032  Sum_probs=41.2

Q ss_pred             CCCCCC-CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053            1 MSSGMG-ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF   49 (231)
Q Consensus         1 ~~~~~~-~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~   49 (231)
                      +++.|+ +..+++++ +++.+|  .+++|+|+||||||||+++|+|...+
T Consensus       137 v~~~~~tg~~vld~v-l~i~~G--q~~~IvG~sGsGKSTLl~~Iag~~~~  183 (438)
T 2dpy_A          137 IEHVLDTGVRAINAL-LTVGRG--QRMGLFAGSGVGKSVLLGMMARYTRA  183 (438)
T ss_dssp             CCSBCCCSCHHHHHH-SCCBTT--CEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred             cceecCCCceEEeee-EEecCC--CEEEEECCCCCCHHHHHHHHhcccCC
Confidence            356776 67799999 999999  99999999999999999999998764

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=98.52  E-value=1.1e-07  Score=86.03  Aligned_cols=92  Identities=22%  Similarity=0.315  Sum_probs=61.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh---CCCccccccCCC-------------CcceeeeeeeEEeeCCcEEEEEeCCCCcCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSIL---GRKAFKASADSS-------------GVTKTCEMKTTVLKDGQVVNVIDTPGLFDSS   87 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~---g~~~~~~~~~~~-------------~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~   87 (231)
                      .+|||+|+.++|||||...|+   |..........+             |+|.........| ++..+.++||||-.+. 
T Consensus         3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDTPGH~DF-   80 (638)
T 3j25_A            3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW-ENTKVNIIDTPGHMDF-   80 (638)
T ss_dssp             CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBC-SSCBCCCEECCCSSST-
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEE-CCEEEEEEECCCcHHH-
Confidence            579999999999999998884   443221111111             3444444444556 7788899999998762 


Q ss_pred             CCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH
Q 038053           88 AGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA  127 (231)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~  127 (231)
                            ..+    ...++.-+|.+++|||+..++..+.+.
T Consensus        81 ------~~E----v~raL~~~DgavlVVDa~~GV~~qT~~  110 (638)
T 3j25_A           81 ------LAE----VYRSLSVLDGAILLISAKDGVQAQTRI  110 (638)
T ss_dssp             ------HHH----HHHHHTTCSEEECCEESSCTTCSHHHH
T ss_pred             ------HHH----HHHHHHHhCEEEEEEeCCCCCcHHHHH
Confidence                  223    334556779999999998666655543

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.51  E-value=5.4e-08  Score=81.71  Aligned_cols=38  Identities=24%  Similarity=0.393  Sum_probs=29.6

Q ss_pred             CCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc-cccc
Q 038053           12 GDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA-FKAS   52 (231)
Q Consensus        12 ~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~-~~~~   52 (231)
                      +++++.+ +|  .+++|+|+||||||||+|+|+|... +..|
T Consensus       207 ~~L~~~~-~G--~~~~lvG~sG~GKSTLln~L~g~~~~~~~G  245 (358)
T 2rcn_A          207 KPLEEAL-TG--RISIFAGQSGVGKSSLLNALLGLQNEILTN  245 (358)
T ss_dssp             HHHHHHH-TT--SEEEEECCTTSSHHHHHHHHHCCSSCCCCC
T ss_pred             HHHHHhc-CC--CEEEEECCCCccHHHHHHHHhccccccccC
Confidence            3444433 46  7999999999999999999999876 5443

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=98.50  E-value=1.2e-07  Score=88.11  Aligned_cols=93  Identities=24%  Similarity=0.346  Sum_probs=58.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccC--------------CCCcceeeeeeeEEee---------------CCcE
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASAD--------------SSGVTKTCEMKTTVLK---------------DGQV   74 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~--------------~~~~t~~~~~~~~~~~---------------~~~~   74 (231)
                      .+|+|+|++|+|||||+|.|++.........              ..++|.........+.               .+..
T Consensus        20 rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   99 (842)
T 1n0u_A           20 RNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFL   99 (842)
T ss_dssp             EEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEE
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCce
Confidence            6899999999999999999986532111000              1123332222222221               1467


Q ss_pred             EEEEeCCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH
Q 038053           75 VNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA  127 (231)
Q Consensus        75 ~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~  127 (231)
                      +.++||||..+..       .+.    ...+..+|++++|+|+.++.+.....
T Consensus       100 i~liDTPG~~df~-------~~~----~~~l~~aD~ailVvDa~~g~~~qt~~  141 (842)
T 1n0u_A          100 INLIDSPGHVDFS-------SEV----TAALRVTDGALVVVDTIEGVCVQTET  141 (842)
T ss_dssp             EEEECCCCCCSSC-------HHH----HHHHHTCSEEEEEEETTTBSCHHHHH
T ss_pred             EEEEECcCchhhH-------HHH----HHHHHhCCEEEEEEeCCCCCCHHHHH
Confidence            8899999987632       122    22335679999999999777766644

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=98.49  E-value=2.3e-08  Score=78.14  Aligned_cols=23  Identities=26%  Similarity=0.427  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      ..|+++|++|+|||||+|.|++.
T Consensus        31 ~~i~i~G~~g~GKTTl~~~l~~~   53 (221)
T 2wsm_A           31 VAVNIMGAIGSGKTLLIERTIER   53 (221)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            78999999999999999999875

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.48  E-value=5.8e-08  Score=87.09  Aligned_cols=48  Identities=17%  Similarity=0.187  Sum_probs=36.7

Q ss_pred             CCCCCCcc-cCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccc
Q 038053            2 SSGMGERV-IDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKAS   52 (231)
Q Consensus         2 ~~~~~~~~-~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~   52 (231)
                      +++|+... .+++++ .+.+|  .+++|+|+||||||||+|+|+|...+..|
T Consensus        84 ~~~Y~~~~~~l~~l~-~~~~G--ei~~LvGpNGaGKSTLLkiL~Gll~P~~G  132 (608)
T 3j16_B           84 THRYSANSFKLHRLP-TPRPG--QVLGLVGTNGIGKSTALKILAGKQKPNLG  132 (608)
T ss_dssp             EEECSTTSCEEECCC-CCCTT--SEEEEECCTTSSHHHHHHHHHTSSCCCTT
T ss_pred             EEEECCCceeecCCC-CCCCC--CEEEEECCCCChHHHHHHHHhcCCCCCCc
Confidence            34565443 344444 57889  99999999999999999999999875443

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.47  E-value=3.6e-08  Score=77.82  Aligned_cols=39  Identities=28%  Similarity=0.333  Sum_probs=22.7

Q ss_pred             CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHh-CCC
Q 038053            7 ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSIL-GRK   47 (231)
Q Consensus         7 ~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~-g~~   47 (231)
                      ..+...+++|++++|  ..|+|+|+||||||||++.|+ |..
T Consensus        13 ~~~~~~~~sl~v~~G--~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           13 EAQTQGPGSMLKSVG--VILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             ---------CCEECC--CEEEEECSCC----CHHHHHHC---
T ss_pred             hhcccCCCCcccCCC--CEEEEECCCCCCHHHHHHHHHhcCC
Confidence            345678899999999  999999999999999999999 875

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=98.43  E-value=1.7e-08  Score=85.20  Aligned_cols=37  Identities=22%  Similarity=0.367  Sum_probs=34.2

Q ss_pred             CCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053           11 DGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF   49 (231)
Q Consensus        11 ~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~   49 (231)
                      ++++++.+++|  ..++|+|+||||||||+|+|+|...+
T Consensus       165 ~~~l~~~i~~G--~~i~ivG~sGsGKSTll~~l~~~~~~  201 (361)
T 2gza_A          165 MSFLRRAVQLE--RVIVVAGETGSGKTTLMKALMQEIPF  201 (361)
T ss_dssp             HHHHHHHHHTT--CCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred             HHHHHHHHhcC--CEEEEECCCCCCHHHHHHHHHhcCCC
Confidence            38899999999  99999999999999999999999873

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.42  E-value=1e-07  Score=73.51  Aligned_cols=31  Identities=10%  Similarity=0.211  Sum_probs=25.1

Q ss_pred             ccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           15 KPTSSSNGKRTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        15 ~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      |+++++|  ..|+|+|+||||||||++.|+|..
T Consensus         1 s~~m~~g--~ii~l~Gp~GsGKSTl~~~L~~~~   31 (205)
T 3tr0_A            1 SNAMNKA--NLFIISAPSGAGKTSLVRALVKAL   31 (205)
T ss_dssp             ----CCC--CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCcCCCC--cEEEEECcCCCCHHHHHHHHHhhC
Confidence            3556778  899999999999999999999874

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=98.41  E-value=2.2e-08  Score=80.16  Aligned_cols=43  Identities=23%  Similarity=0.323  Sum_probs=35.0

Q ss_pred             CCCC-CCcccCCCcccCCCC---CCceEEEEEcCCCCCHHHHHHHHhCC
Q 038053            2 SSGM-GERVIDGDWKPTSSS---NGKRTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus         2 ~~~~-~~~~~~~~~~~~i~~---g~~~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      ++.| ++..+++++++.+.+   |  .+|+|+|++||||||+.+.|.+.
T Consensus        25 ~~~~~~~~~~l~~~~~~i~~~l~g--~~i~l~G~~GsGKSTl~~~La~~   71 (250)
T 3nwj_A           25 HSPFDEEQQILKKKAEEVKPYLNG--RSMYLVGMMGSGKTTVGKIMARS   71 (250)
T ss_dssp             -------CHHHHHHHHTTHHHHTT--CCEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEecCcchhhhhhhhhhhhhcCC--CEEEEECCCCCCHHHHHHHHHHh
Confidence            6778 788899999999999   9  89999999999999999999764

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=98.35  E-value=3e-08  Score=82.68  Aligned_cols=37  Identities=24%  Similarity=0.255  Sum_probs=34.4

Q ss_pred             cCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053           10 IDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus        10 ~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      +++++++.+++|  ..++|+|+||||||||+|+|+|...
T Consensus       160 ~l~~l~~~i~~g--~~v~i~G~~GsGKTTll~~l~g~~~  196 (330)
T 2pt7_A          160 AISAIKDGIAIG--KNVIVCGGTGSGKTTYIKSIMEFIP  196 (330)
T ss_dssp             HHHHHHHHHHHT--CCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred             HHhhhhhhccCC--CEEEEECCCCCCHHHHHHHHhCCCc
Confidence            567788999999  8999999999999999999999987

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=98.33  E-value=3.8e-07  Score=80.75  Aligned_cols=40  Identities=18%  Similarity=0.147  Sum_probs=33.1

Q ss_pred             cCCCcccCCC-CCCceEEEEEcCCCCCHHHHHHHHhCCCcccc
Q 038053           10 IDGDWKPTSS-SNGKRTVVLLGRTGNGKSATGNSILGRKAFKA   51 (231)
Q Consensus        10 ~~~~~~~~i~-~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~   51 (231)
                      -|+...+.++ +|  .++||+|+||||||||+++|+|...+..
T Consensus        13 ~f~l~~l~~~~~G--ei~gLiGpNGaGKSTLlkiL~Gl~~p~~   53 (538)
T 3ozx_A           13 GFKLFGLPTPKNN--TILGVLGKNGVGKTTVLKILAGEIIPNF   53 (538)
T ss_dssp             SCEEECCCCCCTT--EEEEEECCTTSSHHHHHHHHTTSSCCCT
T ss_pred             ceeecCCCCCCCC--CEEEEECCCCCcHHHHHHHHhcCCCCCC
Confidence            3555666666 67  8999999999999999999999987443

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=98.33  E-value=1.4e-07  Score=76.01  Aligned_cols=37  Identities=22%  Similarity=0.131  Sum_probs=32.8

Q ss_pred             ccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053            9 VIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF   49 (231)
Q Consensus         9 ~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~   49 (231)
                      .+|++++  +++|  ..++|+|+||||||||+++|+|...+
T Consensus        15 ~vl~~i~--i~~g--~~v~i~Gp~GsGKSTll~~l~g~~~~   51 (261)
T 2eyu_A           15 DKVLELC--HRKM--GLILVTGPTGSGKSTTIASMIDYINQ   51 (261)
T ss_dssp             THHHHGG--GCSS--EEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred             HHHHHHh--hCCC--CEEEEECCCCccHHHHHHHHHHhCCC
Confidence            5777887  7888  89999999999999999999998653

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=98.32  E-value=3e-07  Score=75.64  Aligned_cols=37  Identities=14%  Similarity=0.230  Sum_probs=32.5

Q ss_pred             CCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053           11 DGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF   49 (231)
Q Consensus        11 ~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~   49 (231)
                      ++.+++.+.+|  ..++|+|+||||||||++.|+|...+
T Consensus        90 ~~~l~~~~~~g--~vi~lvG~nGsGKTTll~~Lag~l~~  126 (302)
T 3b9q_A           90 KTELQLGFRKP--AVIMIVGVNGGGKTTSLGKLAHRLKN  126 (302)
T ss_dssp             CCSCCCCSSSC--EEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             ccccccccCCC--cEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            35688888888  99999999999999999999987653

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=98.31  E-value=1.6e-07  Score=81.75  Aligned_cols=42  Identities=17%  Similarity=-0.055  Sum_probs=36.2

Q ss_pred             CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcccc
Q 038053            7 ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKA   51 (231)
Q Consensus         7 ~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~   51 (231)
                      ...+++++++++++   ..++|+|+||||||||+++|+|...+..
T Consensus        16 ~~~~l~~vsl~i~~---e~~~liG~nGsGKSTLl~~l~Gl~~p~~   57 (483)
T 3euj_A           16 NWNGFFARTFDFDE---LVTTLSGGNGAGKSTTMAGFVTALIPDL   57 (483)
T ss_dssp             EETTEEEEEEECCS---SEEEEECCTTSSHHHHHHHHHHHHCCCT
T ss_pred             ccccccceEEEEcc---ceEEEECCCCCcHHHHHHHHhcCCCCCC
Confidence            34678899999998   4999999999999999999999876543

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.30  E-value=2.7e-07  Score=82.79  Aligned_cols=44  Identities=18%  Similarity=0.289  Sum_probs=36.7

Q ss_pred             ccCCCcccCCCCCCc---eEEEEEcCCCCCHHHHHHHHhCCCccccc
Q 038053            9 VIDGDWKPTSSSNGK---RTVVLLGRTGNGKSATGNSILGRKAFKAS   52 (231)
Q Consensus         9 ~~~~~~~~~i~~g~~---~~i~lvG~~g~GKSTLin~l~g~~~~~~~   52 (231)
                      ..+++++|++.+|.-   .+++|+|+||||||||+++|+|...+..|
T Consensus       361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G  407 (608)
T 3j16_B          361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEG  407 (608)
T ss_dssp             EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBC
T ss_pred             cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence            468899999988721   46999999999999999999999875443

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=98.29  E-value=5.1e-07  Score=77.90  Aligned_cols=25  Identities=24%  Similarity=0.145  Sum_probs=22.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCC
Q 038053           22 GKRTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        22 ~~~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      +...|+++|++++|||||+|.|+|.
T Consensus        66 ~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           66 EVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCcHHHHHHHHhhh
Confidence            3468999999999999999999974

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=98.27  E-value=2e-07  Score=84.79  Aligned_cols=35  Identities=23%  Similarity=0.190  Sum_probs=32.3

Q ss_pred             cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 038053            8 RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSIL   44 (231)
Q Consensus         8 ~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~   44 (231)
                      ..++++++|++++|  .+++|+|+||||||||+|+|+
T Consensus       335 ~~~L~~vsl~I~~G--e~vaIiGpnGsGKSTLl~~i~  369 (670)
T 3ux8_A          335 EHNLKNVSVKIPLG--TFVAVTGVSGSGKSTLVNEVL  369 (670)
T ss_dssp             STTCCSEEEEEETT--SEEEEECSTTSSHHHHHTTTH
T ss_pred             ccccccceeEecCC--CEEEEEeeCCCCHHHHHHHHH
Confidence            45799999999999  999999999999999998765

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.27  E-value=4.6e-07  Score=69.77  Aligned_cols=38  Identities=18%  Similarity=0.236  Sum_probs=23.4

Q ss_pred             CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 038053            7 ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus         7 ~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      ....+++++|.+.++  ..|+|+|++||||||+.+.|.+.
T Consensus        11 ~~~~~~~~~~~~~~~--~~i~l~G~~GsGKsTl~~~La~~   48 (199)
T 3vaa_A           11 VDLGTENLYFQSNAM--VRIFLTGYMGAGKTTLGKAFARK   48 (199)
T ss_dssp             -------------CC--CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCCCCceeEecCCC--CEEEEEcCCCCCHHHHHHHHHHH
Confidence            456789999999999  89999999999999999999854

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=98.26  E-value=2.8e-07  Score=83.82  Aligned_cols=32  Identities=25%  Similarity=0.255  Sum_probs=30.1

Q ss_pred             CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHH
Q 038053            7 ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATG   40 (231)
Q Consensus         7 ~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLi   40 (231)
                      ...+|++++|++++|  .+++|+|+||||||||+
T Consensus        30 ~~~~L~~vsl~i~~G--e~~~liGpNGaGKSTLl   61 (670)
T 3ux8_A           30 RAHNLKNIDVEIPRG--KLVVLTGLSGSGKSSLA   61 (670)
T ss_dssp             CSTTCCSEEEEEETT--SEEEEECSTTSSHHHHH
T ss_pred             CccceeccEEEECCC--CEEEEECCCCCCHHHHh
Confidence            456899999999999  99999999999999997

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.25  E-value=6.1e-07  Score=68.32  Aligned_cols=28  Identities=21%  Similarity=0.400  Sum_probs=25.3

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 038053           17 TSSSNGKRTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        17 ~i~~g~~~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      .+++|  ..|+|+|+||||||||++.|++.
T Consensus         5 ~i~~g--~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            5 DDLGG--NILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             -CCTT--EEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CCCCC--eEEEEECCCCCCHHHHHHHHHhc
Confidence            35678  89999999999999999999997

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=98.25  E-value=1.7e-07  Score=81.48  Aligned_cols=35  Identities=14%  Similarity=0.234  Sum_probs=32.5

Q ss_pred             CcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053           13 DWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF   49 (231)
Q Consensus        13 ~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~   49 (231)
                      ++++.+.+|  .+++|+|+||||||||+++|+|...+
T Consensus       130 ~vsl~i~~G--e~v~IvGpnGsGKSTLlr~L~Gl~~p  164 (460)
T 2npi_A          130 KIRMSNFEG--PRVVIVGGSQTGKTSLSRTLCSYALK  164 (460)
T ss_dssp             HHHHHSSSC--CCEEEEESTTSSHHHHHHHHHHTTHH
T ss_pred             cCceEeCCC--CEEEEECCCCCCHHHHHHHHhCcccc
Confidence            688999999  99999999999999999999998764

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.24  E-value=3.4e-07  Score=70.59  Aligned_cols=26  Identities=35%  Similarity=0.502  Sum_probs=22.5

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           20 SNGKRTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        20 ~g~~~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      +|  ..++|+|+||||||||++.|+|..
T Consensus         3 ~g--~~i~lvGpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            3 GP--RPVVLSGPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             ----CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CC--CEEEEECCCCCCHHHHHHHHHhhC
Confidence            45  789999999999999999999864

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.24  E-value=1.5e-07  Score=72.48  Aligned_cols=31  Identities=29%  Similarity=0.503  Sum_probs=25.4

Q ss_pred             cCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053           16 PTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus        16 ~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      +...+|  ..|+|+|+||||||||++.|++...
T Consensus        14 ~~~~~g--~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           14 LYFQGR--KTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             --CCSC--CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCCCC--CEEEEECcCCCCHHHHHHHHHhhCC
Confidence            344566  8999999999999999999998654

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=98.22  E-value=2.3e-06  Score=78.23  Aligned_cols=126  Identities=22%  Similarity=0.308  Sum_probs=69.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCC---ccccccC-------------CCCcceeeeeeeEEee------CCcEEEEEeCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRK---AFKASAD-------------SSGVTKTCEMKTTVLK------DGQVVNVIDTP   81 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~---~~~~~~~-------------~~~~t~~~~~~~~~~~------~~~~~~l~Dtp   81 (231)
                      .+|+|||+-++|||||.-+|+-..   .......             .-++|.........|.      ++..+.++|||
T Consensus        14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTP   93 (709)
T 4fn5_A           14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTP   93 (709)
T ss_dssp             EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCC
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCC
Confidence            689999999999999998886221   1000001             1233333333333331      24678999999


Q ss_pred             CCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHHhcCCCCcHHHHHHHHHhhHHHHHhhccchhhhhh
Q 038053           82 GLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEAANGGQPYTDEFLAELKRGATELRDQQAEVDSLKE  161 (231)
Q Consensus        82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~is~  161 (231)
                      |-.+.       ..++...+    .-+|.+++|||+..++          .+.+..++..++      ...++++.+|+.
T Consensus        94 GHvDF-------~~Ev~~aL----r~~DgavlvVDaveGV----------~~qT~~v~~~a~------~~~lp~i~~iNK  146 (709)
T 4fn5_A           94 GHVDF-------TIEVERSL----RVLDGAVVVFCGTSGV----------EPQSETVWRQAN------KYGVPRIVYVNK  146 (709)
T ss_dssp             SCTTC-------HHHHHHHH----HHCSEEEEEEETTTCS----------CHHHHHHHHHHH------HHTCCEEEEEEC
T ss_pred             CCccc-------HHHHHHHH----HHhCeEEEEEECCCCC----------chhHHHHHHHHH------HcCCCeEEEEcc
Confidence            98763       23443333    4459999999998443          444444444433      455666665554


Q ss_pred             hh--HhhHHHHHHHHHH
Q 038053          162 YS--KQEISKLMGQMQE  176 (231)
Q Consensus       162 ~~--~~~i~~l~~~i~~  176 (231)
                      ..  +.++.....++..
T Consensus       147 iDr~~a~~~~~~~ei~~  163 (709)
T 4fn5_A          147 MDRQGANFLRVVEQIKK  163 (709)
T ss_dssp             SSSTTCCHHHHHHHHHH
T ss_pred             ccccCccHHHHHHHhhh
Confidence            33  3344444444443

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=98.22  E-value=5.3e-07  Score=70.75  Aligned_cols=31  Identities=16%  Similarity=0.248  Sum_probs=25.5

Q ss_pred             cCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053           16 PTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus        16 ~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      ...++|  ..++|+|+||||||||+++|+|...
T Consensus        11 ~~~~~G--~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           11 HHMAQG--TLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             ----CC--CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             ccCCCC--cEEEEECCCCCCHHHHHHHHhccCC
Confidence            356788  8999999999999999999999875

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=98.22  E-value=6.9e-07  Score=77.78  Aligned_cols=36  Identities=17%  Similarity=0.253  Sum_probs=32.6

Q ss_pred             CCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053           11 DGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus        11 ~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      .++++|.+.+|  .+|+|+|+||||||||++.|+|...
T Consensus       283 ~~~Isl~i~~G--eVI~LVGpNGSGKTTLl~~LAgll~  318 (503)
T 2yhs_A          283 DEPLNVEGKAP--FVILMVGVNGVGKTTTIGKLARQFE  318 (503)
T ss_dssp             BCCCCCCSCTT--EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCCceeeccCC--eEEEEECCCcccHHHHHHHHHHHhh
Confidence            46789999999  9999999999999999999998754

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.21  E-value=2.8e-07  Score=71.09  Aligned_cols=45  Identities=11%  Similarity=-0.025  Sum_probs=34.6

Q ss_pred             CCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053            2 SSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus         2 ~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      ++.++.....+...+...+|  ..|+|+|+||||||||++.|.+...
T Consensus         6 ~~~~~~~~~~~~~~~~~~~g--~~i~l~G~sGsGKSTl~~~La~~l~   50 (200)
T 3uie_A            6 KWHECSVEKVDRQRLLDQKG--CVIWVTGLSGSGKSTLACALNQMLY   50 (200)
T ss_dssp             ----CCCCHHHHHHHHTSCC--EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             cccccccCHHHHHHhcCCCC--eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            34555566666677777888  9999999999999999999988754

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=98.20  E-value=5.8e-07  Score=68.21  Aligned_cols=24  Identities=25%  Similarity=0.495  Sum_probs=22.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCc
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      +++|+|+||||||||++.|+|...
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~   25 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            689999999999999999999864

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=98.18  E-value=9.4e-07  Score=74.30  Aligned_cols=35  Identities=14%  Similarity=0.267  Sum_probs=31.3

Q ss_pred             CCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053           12 GDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus        12 ~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      ..+++.+.+|  .+|+|+|+||||||||++.|+|...
T Consensus       148 ~~l~l~~~~g--~vi~lvG~nGsGKTTll~~Lag~l~  182 (359)
T 2og2_A          148 TELQLGFRKP--AVIMIVGVNGGGKTTSLGKLAHRLK  182 (359)
T ss_dssp             CSCCCCSSSS--EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCcceecCCC--eEEEEEcCCCChHHHHHHHHHhhcc
Confidence            4678888888  9999999999999999999998754

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.17  E-value=1.4e-06  Score=75.00  Aligned_cols=98  Identities=18%  Similarity=0.195  Sum_probs=55.4

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCCc------cccccCC-----------------------CCcceeee-e---
Q 038053           18 SSSNGKRTVVLLGRTGNGKSATGNSILGRKA------FKASADS-----------------------SGVTKTCE-M---   64 (231)
Q Consensus        18 i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~------~~~~~~~-----------------------~~~t~~~~-~---   64 (231)
                      +.++.+.+|+++|++|+||||+++.|++...      .....+.                       ++.+.+.. .   
T Consensus        94 ~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~  173 (432)
T 2v3c_C           94 LNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKE  173 (432)
T ss_dssp             CCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHH
T ss_pred             ccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHH
Confidence            3434457999999999999999999987421      1100000                       00111110 0   


Q ss_pred             eeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCC
Q 038053           65 KTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRF  121 (231)
Q Consensus        65 ~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~  121 (231)
                      ..... .+..++++||||....   ...+..++.. + .....+|.+++|+|+..+.
T Consensus       174 ~l~~~-~~~D~vIIDT~G~~~~---~~~l~~~l~~-i-~~~~~~d~vllVvda~~g~  224 (432)
T 2v3c_C          174 GMEKF-KKADVLIIDTAGRHKE---EKGLLEEMKQ-I-KEITNPDEIILVIDGTIGQ  224 (432)
T ss_dssp             HHHTT-SSCSEEEEECCCSCSS---HHHHHHHHHH-T-TSSSCCSEEEEEEEGGGGG
T ss_pred             HHHHh-hCCCEEEEcCCCCccc---cHHHHHHHHH-H-HHHhcCcceeEEeeccccH
Confidence            00001 4567889999998752   1223333322 1 2224789999999987444

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.16  E-value=9.4e-07  Score=68.03  Aligned_cols=29  Identities=24%  Similarity=0.378  Sum_probs=25.3

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           17 TSSSNGKRTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        17 ~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      ++.+|  ..|+|+|+||||||||++.|.+..
T Consensus         2 ~i~~g--~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            2 DNEKG--LLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             --CCC--CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCCC--CEEEEECCCCCCHHHHHHHHHHhh
Confidence            56778  899999999999999999999876

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=98.15  E-value=1.2e-06  Score=72.46  Aligned_cols=29  Identities=21%  Similarity=0.166  Sum_probs=27.0

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053           18 SSSNGKRTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus        18 i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      +.+|  .+|||+|+||||||||++.|+|...
T Consensus        87 ~~~g--~ivgI~G~sGsGKSTL~~~L~gll~  115 (312)
T 3aez_A           87 RPVP--FIIGVAGSVAVGKSTTARVLQALLA  115 (312)
T ss_dssp             SCCC--EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCC--EEEEEECCCCchHHHHHHHHHhhcc
Confidence            6778  9999999999999999999999876

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=98.14  E-value=4e-07  Score=80.53  Aligned_cols=42  Identities=17%  Similarity=0.054  Sum_probs=36.9

Q ss_pred             CCCcccCCCccc-CCCCCCceEEEEEcCCCCCHHHHHHH--HhCCCc
Q 038053            5 MGERVIDGDWKP-TSSSNGKRTVVLLGRTGNGKSATGNS--ILGRKA   48 (231)
Q Consensus         5 ~~~~~~~~~~~~-~i~~g~~~~i~lvG~~g~GKSTLin~--l~g~~~   48 (231)
                      .++..+|+++++ .+++|  ..++|+|+||||||||++.  +.|...
T Consensus        22 ~~g~~~Ld~i~~G~i~~G--e~~~l~G~nGsGKSTL~~~~ll~Gl~~   66 (525)
T 1tf7_A           22 RTMIEGFDDISHGGLPIG--RSTLVSGTSGTGKTLFSIQFLYNGIIE   66 (525)
T ss_dssp             CCCCTTHHHHTTSSEETT--SEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred             cCCchhHHHhcCCCCCCC--eEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence            356789999999 99999  9999999999999999999  566544

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=98.13  E-value=1e-06  Score=68.26  Aligned_cols=29  Identities=28%  Similarity=0.425  Sum_probs=26.1

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053           18 SSSNGKRTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus        18 i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      .++|  ..|+|+|+||||||||++.|+|...
T Consensus        19 ~~~g--~~v~I~G~sGsGKSTl~~~l~~~~~   47 (208)
T 3c8u_A           19 QPGR--QLVALSGAPGSGKSTLSNPLAAALS   47 (208)
T ss_dssp             CCSC--EEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred             CCCC--eEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4566  9999999999999999999999875

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=98.12  E-value=1.1e-06  Score=68.04  Aligned_cols=29  Identities=14%  Similarity=0.233  Sum_probs=24.4

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053           18 SSSNGKRTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus        18 i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      .++|  ..|+|+|+||||||||++.|.|...
T Consensus         3 ~~~~--~~i~i~G~~GsGKSTl~~~l~~~~~   31 (211)
T 3asz_A            3 APKP--FVIGIAGGTASGKTTLAQALARTLG   31 (211)
T ss_dssp             --CC--EEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred             CCCc--EEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3456  8999999999999999999999743

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=98.11  E-value=6.5e-07  Score=73.19  Aligned_cols=39  Identities=13%  Similarity=-0.006  Sum_probs=35.8

Q ss_pred             cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053            8 RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus         8 ~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      -.+|+++++.+++|  ..++|+|+||+|||||++.|+|...
T Consensus        22 ~~~Ld~i~~~l~~G--~~~~i~G~~G~GKTTl~~~ia~~~~   60 (296)
T 1cr0_A           22 CTGINDKTLGARGG--EVIMVTSGSGMGKSTFVRQQALQWG   60 (296)
T ss_dssp             CTTHHHHHCSBCTT--CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCC--eEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            35789999999999  9999999999999999999998865

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=98.11  E-value=4.2e-06  Score=69.32  Aligned_cols=85  Identities=14%  Similarity=0.077  Sum_probs=52.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhh
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLA  104 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~  104 (231)
                      +|+++|.+|+|||||++.+++...+... ...+.|........  .....+.+.||||.......  .+   ..   ...
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~-~~~~~Tig~~~~~v--~~~v~LqIWDTAGQErf~~~--~l---~~---~~y   69 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDT-LYLESTSNPSLEHF--STLIDLAVMELPGQLNYFEP--SY---DS---ERL   69 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGG-TTCCCCCSCCCEEE--CSSSCEEEEECCSCSSSCCC--SH---HH---HHH
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCcc-ceecCeeeeeeEEE--ccEEEEEEEECCCchhccch--hh---hh---hhh
Confidence            4899999999999999998876442211 11222322222222  13467889999998653210  01   01   122


Q ss_pred             cCCccEEEEEEECCCC
Q 038053          105 KGGIHAVLVVFSVRSR  120 (231)
Q Consensus       105 ~~~~~~il~vvd~~~~  120 (231)
                      +..++++++|+|.+++
T Consensus        70 yr~a~~~IlV~Ditd~   85 (331)
T 3r7w_B           70 FKSVGALVYVIDSQDE   85 (331)
T ss_dssp             HTTCSEEEEECCCSSC
T ss_pred             ccCCCEEEEEEECCch
Confidence            4678999999999866

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=98.11  E-value=8.8e-07  Score=74.72  Aligned_cols=38  Identities=21%  Similarity=0.136  Sum_probs=33.7

Q ss_pred             CCCcccCCCC--CCceEEEEEcCCCCCHHHHHHHHhCCCccc
Q 038053           11 DGDWKPTSSS--NGKRTVVLLGRTGNGKSATGNSILGRKAFK   50 (231)
Q Consensus        11 ~~~~~~~i~~--g~~~~i~lvG~~g~GKSTLin~l~g~~~~~   50 (231)
                      .+.+++.+.+  +  .+++|+|+||||||||+++|+|...+.
T Consensus       158 ~~~v~~~v~~~lg--~k~~IvG~nGsGKSTLlk~L~gl~~~~  197 (365)
T 1lw7_A          158 WKFIPKEARPFFA--KTVAILGGESSGKSVLVNKLAAVFNTT  197 (365)
T ss_dssp             GGGSCTTTGGGTC--EEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred             hhhCCHHHHHhhh--CeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            4568899999  8  999999999999999999999987643

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.10  E-value=1.3e-06  Score=66.09  Aligned_cols=25  Identities=32%  Similarity=0.647  Sum_probs=22.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      ..++|+|+||||||||++.|++...
T Consensus         6 ~~i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            6 KTLVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhCC
Confidence            7999999999999999999998653

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=98.09  E-value=3.4e-07  Score=80.54  Aligned_cols=39  Identities=18%  Similarity=0.135  Sum_probs=34.3

Q ss_pred             cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053            8 RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus         8 ~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      ..+++++++.+.+|  ..++|+|+||||||||+|+|+|...
T Consensus       247 ~~~l~~l~~~v~~g--~~i~I~GptGSGKTTlL~aL~~~i~  285 (511)
T 2oap_1          247 SGVLAYLWLAIEHK--FSAIVVGETASGKTTTLNAIMMFIP  285 (511)
T ss_dssp             HHHHHHHHHHHHTT--CCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred             HHHHHHHHHHHhCC--CEEEEECCCCCCHHHHHHHHHhhCC
Confidence            34566788888888  7899999999999999999999886

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=98.07  E-value=4.4e-07  Score=74.82  Aligned_cols=28  Identities=18%  Similarity=0.198  Sum_probs=25.1

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053           19 SSNGKRTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus        19 ~~g~~~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      .+|  .+|||+|+||||||||++.|.|...
T Consensus        78 ~~g--~iigI~G~~GsGKSTl~~~L~~~l~  105 (308)
T 1sq5_A           78 RIP--YIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             CCC--EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CCC--EEEEEECCCCCCHHHHHHHHHHHHh
Confidence            666  8999999999999999999999643

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.06  E-value=1.5e-05  Score=68.60  Aligned_cols=93  Identities=17%  Similarity=0.185  Sum_probs=53.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHh------CCCccccccCCC---------------Ccceeeeee-------------eE
Q 038053           22 GKRTVVLLGRTGNGKSATGNSIL------GRKAFKASADSS---------------GVTKTCEMK-------------TT   67 (231)
Q Consensus        22 ~~~~i~lvG~~g~GKSTLin~l~------g~~~~~~~~~~~---------------~~t~~~~~~-------------~~   67 (231)
                      ++..|+++|++|+||||++..|+      |..+.....+..               ++.......             ..
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a  178 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF  178 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence            34899999999999999999988      443321111110               000000000             00


Q ss_pred             EeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCC
Q 038053           68 VLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSR  120 (231)
Q Consensus        68 ~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~  120 (231)
                      . ..+..++++||||....   ...+..++..... . ..+|.+++|+|+..+
T Consensus       179 ~-~~~~DvVIIDTaGrl~~---d~~lm~el~~i~~-~-~~pd~vlLVvDA~~g  225 (443)
T 3dm5_A          179 K-SKGVDIIIVDTAGRHKE---DKALIEEMKQISN-V-IHPHEVILVIDGTIG  225 (443)
T ss_dssp             H-HTTCSEEEEECCCCSSC---CHHHHHHHHHHHH-H-HCCSEEEEEEEGGGG
T ss_pred             H-hCCCCEEEEECCCcccc---hHHHHHHHHHHHH-h-hcCceEEEEEeCCCc
Confidence            0 03467889999997652   2344444444322 2 357899999999744

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.04  E-value=9.4e-06  Score=66.51  Aligned_cols=32  Identities=22%  Similarity=0.304  Sum_probs=26.5

Q ss_pred             CC-cccCCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 038053           12 GD-WKPTSSSNGKRTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        12 ~~-~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      .+ +++... +  ..|+++|++|+||||+++.|++.
T Consensus        89 ~~~i~~~~~-~--~vi~i~G~~G~GKTT~~~~la~~  121 (297)
T 1j8m_F           89 EPKVIPDKI-P--YVIMLVGVQGTGKTTTAGKLAYF  121 (297)
T ss_dssp             CCCCSCSSS-S--EEEEEECSSCSSTTHHHHHHHHH
T ss_pred             ccccccCCC-C--eEEEEECCCCCCHHHHHHHHHHH
Confidence            44 667665 5  89999999999999999999843

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=98.04  E-value=1.9e-06  Score=65.07  Aligned_cols=33  Identities=27%  Similarity=0.291  Sum_probs=28.8

Q ss_pred             CCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           12 GDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        12 ~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      +++++.+.+|   ..+|+|+||||||||+.+|.+..
T Consensus        18 ~~~~~~~~~g---~~~i~G~NGsGKStll~ai~~~l   50 (182)
T 3kta_A           18 KKVVIPFSKG---FTAIVGANGSGKSNIGDAILFVL   50 (182)
T ss_dssp             SCEEEECCSS---EEEEEECTTSSHHHHHHHHHHHT
T ss_pred             ccEEEecCCC---cEEEECCCCCCHHHHHHHHHHHH
Confidence            6778888887   88999999999999999997654

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=98.02  E-value=6.5e-07  Score=76.81  Aligned_cols=35  Identities=23%  Similarity=0.154  Sum_probs=28.6

Q ss_pred             cCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053           10 IDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus        10 ~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      +|+++ + ..+|  ..|+|+|+||||||||+++|+|...
T Consensus       158 ~L~~l-~-~~~g--gii~I~GpnGSGKTTlL~allg~l~  192 (418)
T 1p9r_A          158 NFRRL-I-KRPH--GIILVTGPTGSGKSTTLYAGLQELN  192 (418)
T ss_dssp             HHHHH-H-TSSS--EEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             HHHHH-H-HhcC--CeEEEECCCCCCHHHHHHHHHhhcC
Confidence            45555 3 3566  7999999999999999999999865

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=98.02  E-value=1.6e-06  Score=67.78  Aligned_cols=30  Identities=13%  Similarity=0.226  Sum_probs=26.9

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053           17 TSSSNGKRTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus        17 ~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      .+++|  ..++|+|+||||||||++.|+|...
T Consensus        21 gi~~G--~~~~l~G~nGsGKSTll~~l~g~~~   50 (231)
T 4a74_A           21 GIETQ--AITEVFGEFGSGKTQLAHTLAVMVQ   50 (231)
T ss_dssp             SEESS--EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CCCCC--cEEEEECCCCCCHHHHHHHHHHHHh
Confidence            57788  9999999999999999999999543

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=98.02  E-value=2.1e-06  Score=81.17  Aligned_cols=44  Identities=23%  Similarity=0.236  Sum_probs=35.9

Q ss_pred             CCCC-CCcccCCCcccCCCC-------CCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053            2 SSGM-GERVIDGDWKPTSSS-------NGKRTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus         2 ~~~~-~~~~~~~~~~~~i~~-------g~~~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      ++.| ++..++++++|.+.+       |  ..++|+|+||+|||||++.| |...
T Consensus       762 ~~~~~~~~~v~ndi~l~~~~~~~~~~~g--~i~~ItGpNgsGKSTlLr~i-Gl~~  813 (1022)
T 2o8b_B          762 TKTFFGDDFIPNDILIGCEEEEQENGKA--YCVLVTGPNMGGKSTLMRQA-GLLA  813 (1022)
T ss_dssp             -----CCCCCCEEEEESCCCSCC---CC--CEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred             EEEecCCceEeeeeeeccccccccCCCC--cEEEEECCCCCChHHHHHHH-HHHH
Confidence            3456 667899999999987       7  89999999999999999999 8654

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=98.00  E-value=7.7e-07  Score=72.19  Aligned_cols=40  Identities=15%  Similarity=0.188  Sum_probs=34.1

Q ss_pred             CCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053            5 MGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus         5 ~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      ++...+++++++.+++|    ++|+|+||+|||||+++|+|...
T Consensus        30 ~~~~~~l~~~~l~~~~G----vlL~Gp~GtGKTtLakala~~~~   69 (274)
T 2x8a_A           30 VRNPDQFKALGLVTPAG----VLLAGPPGCGKTLLAKAVANESG   69 (274)
T ss_dssp             HHSHHHHHHTTCCCCSE----EEEESSTTSCHHHHHHHHHHHTT
T ss_pred             hhCHHHHHHcCCCCCCe----EEEECCCCCcHHHHHHHHHHHcC
Confidence            34556788889999887    99999999999999999998754

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.00  E-value=2.6e-06  Score=65.51  Aligned_cols=29  Identities=28%  Similarity=0.539  Sum_probs=22.9

Q ss_pred             cCCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 038053           16 PTSSSNGKRTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        16 ~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      +...+|  ..|+|+|+||||||||++.|.+.
T Consensus        24 m~~~~g--~~i~l~G~~GsGKSTl~~~L~~~   52 (200)
T 4eun_A           24 MTGEPT--RHVVVMGVSGSGKTTIAHGVADE   52 (200)
T ss_dssp             ----CC--CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             hcCCCC--cEEEEECCCCCCHHHHHHHHHHh
Confidence            444566  89999999999999999999865

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=98.00  E-value=1.1e-05  Score=75.72  Aligned_cols=36  Identities=17%  Similarity=0.050  Sum_probs=32.3

Q ss_pred             CCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHH
Q 038053            6 GERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSI   43 (231)
Q Consensus         6 ~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l   43 (231)
                      +...+++++++.+.+|  ..++|+|+||+|||||++.|
T Consensus       647 ~~~~v~ndisl~~~~g--~i~~ItGpNGsGKSTlLr~i  682 (934)
T 3thx_A          647 EIAFIPNDVYFEKDKQ--MFHIITGPNMGGKSTYIRQT  682 (934)
T ss_dssp             -CCCCCEEEEEETTTB--CEEEEECCTTSSHHHHHHHH
T ss_pred             CceeecccceeecCCC--eEEEEECCCCCCHHHHHHHH
Confidence            3456778999999999  89999999999999999999

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=98.00  E-value=2.2e-06  Score=79.11  Aligned_cols=39  Identities=18%  Similarity=0.165  Sum_probs=34.7

Q ss_pred             CCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053            6 GERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus         6 ~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      ++..+++++++. ++|  ..++|+|+||+|||||++.|+|..
T Consensus       593 ~~~~vlndisl~-~~g--~i~~ItGpNGsGKSTlLr~iagl~  631 (800)
T 1wb9_A          593 NEPFIANPLNLS-PQR--RMLIITGPNMGGKSTYMRQTALIA  631 (800)
T ss_dssp             SSCCCCEEEEEC-SSS--CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCceeeeccccc-CCC--cEEEEECCCCCChHHHHHHHHHHH
Confidence            456788999999 788  899999999999999999999864

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=98.00  E-value=2.2e-06  Score=65.66  Aligned_cols=25  Identities=28%  Similarity=0.268  Sum_probs=23.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      .+++|+|+||||||||++.|+|...
T Consensus         2 ~~i~i~G~nG~GKTTll~~l~g~~~   26 (189)
T 2i3b_A            2 RHVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCChHHHHHHHHHhhcc
Confidence            6899999999999999999999865

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=97.98  E-value=5.6e-07  Score=77.02  Aligned_cols=39  Identities=15%  Similarity=0.059  Sum_probs=33.3

Q ss_pred             CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053            7 ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus         7 ~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      +-.+++++++.+.+|   +++|+|+||||||||+++|.+...
T Consensus        47 nf~~l~~v~l~~~~G---~~~lvG~NGaGKStLl~aI~~l~~   85 (415)
T 4aby_A           47 NLATITQLELELGGG---FCAFTGETGAGKSIIVDALGLLLG   85 (415)
T ss_dssp             EETTEEEEEEECCSS---EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred             cccceeeEEEecCCC---cEEEECCCCCCHHHHHHHHHHHhC
Confidence            345788999999998   899999999999999999866543

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=97.98  E-value=1.8e-06  Score=80.59  Aligned_cols=39  Identities=15%  Similarity=0.206  Sum_probs=34.9

Q ss_pred             CCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 038053            6 GERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus         6 ~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      ++..+++++++.+++|  ..++|+||||+|||||++.|.+.
T Consensus       658 ~~~~V~ndvsl~~~~g--~i~~ItGPNGaGKSTlLr~i~~i  696 (918)
T 3thx_B          658 QDQYVPNNTDLSEDSE--RVMIITGPNMGGKSSYIKQVALI  696 (918)
T ss_dssp             CSSSCCEEEEECTTSC--CEEEEESCCCHHHHHHHHHHHHH
T ss_pred             CCceecccccccCCCC--eEEEEECCCCCchHHHHHHHHHH
Confidence            3567899999999999  99999999999999999998643

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.96  E-value=1.6e-06  Score=73.44  Aligned_cols=37  Identities=14%  Similarity=0.047  Sum_probs=33.4

Q ss_pred             ccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053            9 VIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus         9 ~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      .+++++++.+++|  ..++|+|+||+|||||+++|+|..
T Consensus       157 ~~l~~~~~~i~~~--~~i~l~G~~GsGKSTl~~~l~~~~  193 (377)
T 1svm_A          157 DFLKCMVYNIPKK--RYWLFKGPIDSGKTTLAAALLELC  193 (377)
T ss_dssp             HHHHHHHHCCTTC--CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHHhcccccCCC--CEEEEECCCCCCHHHHHHHHHhhc
Confidence            5677889999999  899999999999999999999753

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.95  E-value=4.3e-06  Score=64.80  Aligned_cols=28  Identities=21%  Similarity=0.380  Sum_probs=24.9

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053           19 SSNGKRTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus        19 ~~g~~~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      ++|  ..|+|+|+||||||||++.|++...
T Consensus         6 ~~g--~~i~l~GpsGsGKsTl~~~L~~~~~   33 (208)
T 3tau_A            6 ERG--LLIVLSGPSGVGKGTVREAVFKDPE   33 (208)
T ss_dssp             CCC--CEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred             CCC--cEEEEECcCCCCHHHHHHHHHhhCC
Confidence            356  8999999999999999999998864

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.93  E-value=5.1e-06  Score=66.00  Aligned_cols=26  Identities=31%  Similarity=0.519  Sum_probs=24.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh---CCCcc
Q 038053           24 RTVVLLGRTGNGKSATGNSIL---GRKAF   49 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~---g~~~~   49 (231)
                      .+|+|+|+||||||||++.|+   |...+
T Consensus        28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~~   56 (246)
T 2bbw_A           28 LRAVILGPPGSGKGTVCQRIAQNFGLQHL   56 (246)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence            799999999999999999999   88654

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.92  E-value=3.2e-06  Score=63.80  Aligned_cols=31  Identities=16%  Similarity=0.238  Sum_probs=26.5

Q ss_pred             cCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053           16 PTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus        16 ~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      +.+++|  ..++|+|+||+|||||+++|++...
T Consensus        33 ~~~~~g--~~~~l~G~~G~GKTtL~~~i~~~~~   63 (180)
T 3ec2_A           33 FNPEEG--KGLTFVGSPGVGKTHLAVATLKAIY   63 (180)
T ss_dssp             CCGGGC--CEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred             ccccCC--CEEEEECCCCCCHHHHHHHHHHHHH
Confidence            345566  8899999999999999999998764

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.90  E-value=5.1e-06  Score=69.80  Aligned_cols=31  Identities=29%  Similarity=0.341  Sum_probs=26.8

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053           17 TSSSNGKRTVVLLGRTGNGKSATGNSILGRKAF   49 (231)
Q Consensus        17 ~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~   49 (231)
                      ...++  ..|+|+|+||||||||+++|+|...+
T Consensus       119 ~~~~~--g~i~I~GptGSGKTTlL~~l~g~~~~  149 (356)
T 3jvv_A          119 SDVPR--GLVLVTGPTGSGKSTTLAAMLDYLNN  149 (356)
T ss_dssp             HHCSS--EEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred             HhCCC--CEEEEECCCCCCHHHHHHHHHhcccC
Confidence            45666  79999999999999999999997653

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.89  E-value=3.2e-05  Score=66.47  Aligned_cols=94  Identities=21%  Similarity=0.237  Sum_probs=52.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHh------CCCccccccC---------------CCCcceeeee-------------eeEE
Q 038053           23 KRTVVLLGRTGNGKSATGNSIL------GRKAFKASAD---------------SSGVTKTCEM-------------KTTV   68 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~------g~~~~~~~~~---------------~~~~t~~~~~-------------~~~~   68 (231)
                      +..|+++|++||||||++..|+      |........+               ..+.......             ....
T Consensus        97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~  176 (433)
T 3kl4_A           97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV  176 (433)
T ss_dssp             SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence            4899999999999999999998      3322111000               0011000000             0000


Q ss_pred             eeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCC
Q 038053           69 LKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSR  120 (231)
Q Consensus        69 ~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~  120 (231)
                      . .+..++++||||..... ....+..++.......  .++.+++|+|+..+
T Consensus       177 ~-~~~DvvIIDTaGr~~~~-~d~~lm~el~~i~~~~--~pd~vlLVlDa~~g  224 (433)
T 3kl4_A          177 K-NKMDIIIVDTAGRHGYG-EETKLLEEMKEMYDVL--KPDDVILVIDASIG  224 (433)
T ss_dssp             T-TTCSEEEEEECCCSSSC-CTTHHHHHHHHHHHHH--CCSEEEEEEEGGGG
T ss_pred             h-cCCCEEEEECCCCcccc-CCHHHHHHHHHHHHhh--CCcceEEEEeCccc
Confidence            1 25678899999965411 1233444554433322  56899999999743

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.88  E-value=1.8e-06  Score=68.87  Aligned_cols=38  Identities=18%  Similarity=0.267  Sum_probs=32.2

Q ss_pred             CCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053            6 GERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus         6 ~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      +...+++++++.+++|    ++|+|+||+|||||+++|++..
T Consensus        36 ~~~~~~~~~~~~~~~g----~ll~G~~G~GKTtl~~~i~~~~   73 (254)
T 1ixz_A           36 KNPSRFHEMGARIPKG----VLLVGPPGVGKTHLARAVAGEA   73 (254)
T ss_dssp             HCHHHHHHTTCCCCSE----EEEECCTTSSHHHHHHHHHHHT
T ss_pred             HCHHHHHHcCCCCCCe----EEEECCCCCCHHHHHHHHHHHh
Confidence            3445677788888877    9999999999999999999864

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.88  E-value=4.9e-06  Score=63.23  Aligned_cols=22  Identities=27%  Similarity=0.477  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 038053           24 RTVVLLGRTGNGKSATGNSILG   45 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g   45 (231)
                      ..++|+|+||||||||++.|++
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHhc
Confidence            6899999999999999999986

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=97.87  E-value=4.9e-06  Score=76.48  Aligned_cols=37  Identities=16%  Similarity=0.115  Sum_probs=32.6

Q ss_pred             CCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053            6 GERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus         6 ~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      ++..+++++++.   |  ..++|+|+||+|||||++.|+|..
T Consensus       564 ~~~~vl~disl~---g--~i~~I~GpNGsGKSTlLr~iagl~  600 (765)
T 1ewq_A          564 RTEFVPNDLEMA---H--ELVLITGPNMAGKSTFLRQTALIA  600 (765)
T ss_dssp             TSCCCCEEEEES---S--CEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             CCceEeeeccCC---C--cEEEEECCCCCChHHHHHHHHhhh
Confidence            345678899998   7  899999999999999999999865

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=97.87  E-value=6.6e-06  Score=64.76  Aligned_cols=31  Identities=23%  Similarity=0.202  Sum_probs=27.2

Q ss_pred             cccCCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 038053           14 WKPTSSSNGKRTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        14 ~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      -..+.++|  ..|+|+|++|||||||++.|.+.
T Consensus        13 ~~~~~~~g--~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           13 KYAEGTQP--FTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CBTTTCCC--EEEEEECSTTSCHHHHHHTTGGG
T ss_pred             ccCCCCCc--eEEEEECCCCCCHHHHHHHHHhc
Confidence            34466778  99999999999999999999886

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.86  E-value=5e-06  Score=68.40  Aligned_cols=27  Identities=26%  Similarity=0.271  Sum_probs=23.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKAF   49 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~~   49 (231)
                      +..|+|+|+||||||||++.|+|...+
T Consensus       102 g~vi~lvG~nGsGKTTll~~Lagll~~  128 (304)
T 1rj9_A          102 GRVVLVVGVNGVGKTTTIAKLGRYYQN  128 (304)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence            389999999999999999999976543

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.86  E-value=1.1e-05  Score=62.20  Aligned_cols=33  Identities=18%  Similarity=0.252  Sum_probs=28.0

Q ss_pred             CcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           13 DWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        13 ~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      +.-..++++  ..|+|+|++|||||||.+.|.+..
T Consensus        13 ~~~~~~~~~--~~i~i~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           13 GLVPRGSKT--FIIGISGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             -CCCCSCCC--EEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             cccccCCCC--eEEEEECCCCCCHHHHHHHHHHhc
Confidence            444567777  899999999999999999999974

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.86  E-value=6e-06  Score=69.84  Aligned_cols=30  Identities=27%  Similarity=0.329  Sum_probs=27.0

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053           17 TSSSNGKRTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus        17 ~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      .+.+|  ..++|+|+||||||||+++|+|...
T Consensus       132 ~~~~g--~~i~ivG~~GsGKTTll~~l~~~~~  161 (372)
T 2ewv_A          132 CHRKM--GLILVTGPTGSGKSTTIASMIDYIN  161 (372)
T ss_dssp             TTSSS--EEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             hhcCC--CEEEEECCCCCCHHHHHHHHHhhcC
Confidence            36778  8999999999999999999999765

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.83  E-value=9.3e-06  Score=64.89  Aligned_cols=29  Identities=14%  Similarity=0.298  Sum_probs=25.3

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHh---CCCcc
Q 038053           19 SSNGKRTVVLLGRTGNGKSATGNSIL---GRKAF   49 (231)
Q Consensus        19 ~~g~~~~i~lvG~~g~GKSTLin~l~---g~~~~   49 (231)
                      ++|  .+|+|+|++||||||+++.|.   |...+
T Consensus        25 ~~g--~~I~I~G~~GsGKSTl~k~La~~Lg~~~~   56 (252)
T 4e22_A           25 AIA--PVITVDGPSGAGKGTLCKALAESLNWRLL   56 (252)
T ss_dssp             TTS--CEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred             CCC--cEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence            556  899999999999999999999   76543

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=97.83  E-value=2.5e-06  Score=69.08  Aligned_cols=38  Identities=18%  Similarity=0.267  Sum_probs=32.2

Q ss_pred             CCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053            6 GERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus         6 ~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      +...+++++++.+++|    ++|+|+||+|||||+++|++..
T Consensus        60 ~~~~~l~~~~~~~~~g----vll~Gp~GtGKTtl~~~i~~~~   97 (278)
T 1iy2_A           60 KNPSRFHEMGARIPKG----VLLVGPPGVGKTHLARAVAGEA   97 (278)
T ss_dssp             HCHHHHHHTTCCCCCE----EEEECCTTSSHHHHHHHHHHHT
T ss_pred             HCHHHHHHcCCCCCCe----EEEECCCcChHHHHHHHHHHHc
Confidence            3445677788888877    9999999999999999999865

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=97.82  E-value=4.4e-06  Score=65.19  Aligned_cols=38  Identities=13%  Similarity=0.126  Sum_probs=31.9

Q ss_pred             ccCCCccc-CCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053            9 VIDGDWKP-TSSSNGKRTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus         9 ~~~~~~~~-~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      ..|+++.. .+++|  ..++|+|+||+|||||++.|++...
T Consensus        10 ~~Ld~~~~ggi~~G--~~~~i~G~~GsGKTtl~~~l~~~~~   48 (235)
T 2w0m_A           10 LDFDKLIQGGIPQG--FFIALTGEPGTGKTIFSLHFIAKGL   48 (235)
T ss_dssp             HHHHGGGTTSEETT--CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             hHHHHHhcCCCcCC--CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            45667666 78899  8999999999999999999996543

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=97.81  E-value=6.4e-06  Score=69.47  Aligned_cols=32  Identities=25%  Similarity=0.133  Sum_probs=26.9

Q ss_pred             cCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 038053           10 IDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSIL   44 (231)
Q Consensus        10 ~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~   44 (231)
                      .++++++.+++|   .++|+|+||||||||+++|+
T Consensus        13 ~~~~~~i~~~~g---~~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           13 GLKNVDIEFQSG---ITVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             TEEEEEEECCSE---EEEEECCTTSSHHHHHHHHH
T ss_pred             CccceEEecCCC---eEEEECCCCCCHHHHHHHHH
Confidence            345667788877   57799999999999999998

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.80  E-value=1e-05  Score=67.23  Aligned_cols=28  Identities=18%  Similarity=0.300  Sum_probs=25.1

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053           19 SSNGKRTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus        19 ~~g~~~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      ++|  ..++|+|+||||||||++.|+|...
T Consensus       127 ~~g--~vi~lvG~nGaGKTTll~~Lag~l~  154 (328)
T 3e70_C          127 EKP--YVIMFVGFNGSGKTTTIAKLANWLK  154 (328)
T ss_dssp             CSS--EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCC--eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            456  9999999999999999999998765

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.77  E-value=1.3e-06  Score=72.80  Aligned_cols=44  Identities=18%  Similarity=0.205  Sum_probs=34.1

Q ss_pred             CCCCcccCCCcccCCCCC-----CceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053            4 GMGERVIDGDWKPTSSSN-----GKRTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus         4 ~~~~~~~~~~~~~~i~~g-----~~~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      .+|...+++++++.+..+     .+..++|+|+||+|||||+++|++..
T Consensus        27 ~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l   75 (334)
T 1in4_A           27 FIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL   75 (334)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred             ccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence            456666777777776542     22579999999999999999999875

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.77  E-value=1.2e-05  Score=60.17  Aligned_cols=26  Identities=31%  Similarity=0.542  Sum_probs=22.6

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 038053           19 SSNGKRTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        19 ~~g~~~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      .+|  ..|+|+|+|||||||+++.|.+.
T Consensus         6 ~~g--~~i~l~G~~GsGKSTl~~~l~~~   31 (175)
T 1knq_A            6 HDH--HIYVLMGVSGSGKSAVASEVAHQ   31 (175)
T ss_dssp             TTS--EEEEEECSTTSCHHHHHHHHHHH
T ss_pred             CCC--cEEEEEcCCCCCHHHHHHHHHHh
Confidence            345  89999999999999999998753

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.76  E-value=1e-05  Score=60.35  Aligned_cols=25  Identities=32%  Similarity=0.593  Sum_probs=22.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      ..|+|+|+||||||||.+.|.+...
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~l~   29 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQLN   29 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhC
Confidence            6899999999999999999988643

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=97.75  E-value=1.2e-05  Score=67.56  Aligned_cols=34  Identities=12%  Similarity=-0.008  Sum_probs=30.4

Q ss_pred             ccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhC
Q 038053            9 VIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILG   45 (231)
Q Consensus         9 ~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g   45 (231)
                      ..++++++.+++|   .++|+|+||+|||||+++|.+
T Consensus        15 ~~~~~~~~~~~~g---~~~i~G~nG~GKttll~ai~~   48 (359)
T 2o5v_A           15 RNLAPGTLNFPEG---VTGIYGENGAGKTNLLEAAYL   48 (359)
T ss_dssp             TTCCSEEEECCSE---EEEEECCTTSSHHHHHHHHHH
T ss_pred             cceeeeEEEEcCC---eEEEECCCCCChhHHHHHHHH
Confidence            4567889999887   899999999999999999986

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=97.75  E-value=1.6e-05  Score=58.33  Aligned_cols=28  Identities=25%  Similarity=0.361  Sum_probs=22.7

Q ss_pred             cccCCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 038053           14 WKPTSSSNGKRTVVLLGRTGNGKSATGNSIL   44 (231)
Q Consensus        14 ~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~   44 (231)
                      ..+.+.+|   ..+|+|+||+||||++.+|.
T Consensus        17 ~~i~f~~g---~~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           17 TVVEFKEG---INLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEECCSE---EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEcCCC---eEEEECCCCCCHHHHHHHHH
Confidence            34455554   88999999999999999976

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=97.72  E-value=5.6e-06  Score=77.23  Aligned_cols=34  Identities=24%  Similarity=0.191  Sum_probs=31.6

Q ss_pred             ccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 038053            9 VIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSIL   44 (231)
Q Consensus         9 ~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~   44 (231)
                      ..|++++++++.|  .+++|+|+||||||||++.|+
T Consensus       638 ~~Lk~Vsl~I~~G--eiv~I~G~nGSGKSTLl~~ll  671 (972)
T 2r6f_A          638 HNLKNVSVKIPLG--TFVAVTGVSGSGKSTLVNEVL  671 (972)
T ss_dssp             SSCCSEEEEEESS--SEEECCBCTTSSHHHHHTTTH
T ss_pred             cccccceEEEcCC--CEEEEEcCCCCCHHHHHHHHH
Confidence            4699999999999  999999999999999999864

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.72  E-value=1.3e-05  Score=58.83  Aligned_cols=27  Identities=19%  Similarity=0.292  Sum_probs=24.2

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053           20 SNGKRTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus        20 ~g~~~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      +|  ..++|+|+||+|||||+++|++...
T Consensus        35 ~g--~~~~l~G~~G~GKTtL~~~i~~~~~   61 (149)
T 2kjq_A           35 HG--QFIYVWGEEGAGKSHLLQAWVAQAL   61 (149)
T ss_dssp             CC--SEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred             CC--CEEEEECCCCCCHHHHHHHHHHHHH
Confidence            56  7999999999999999999998754

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.71  E-value=2.4e-05  Score=59.26  Aligned_cols=32  Identities=16%  Similarity=0.289  Sum_probs=25.5

Q ss_pred             CcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 038053           13 DWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        13 ~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      ++++..+.+  ..|+|+|++||||||+.+.|...
T Consensus         2 ~~~~~~~~~--~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            2 PGSMEQPKG--INILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             ----CCCSS--CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcCcCCCCC--CEEEEECCCCCCHHHHHHHHHHh
Confidence            467777778  89999999999999999999765

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.67  E-value=2.4e-05  Score=64.70  Aligned_cols=27  Identities=19%  Similarity=0.158  Sum_probs=23.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053           22 GKRTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus        22 ~~~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      .+..|||+|+||||||||++.|.+...
T Consensus        91 ~p~iigI~GpsGSGKSTl~~~L~~ll~  117 (321)
T 3tqc_A           91 VPYIIGIAGSVAVGKSTTSRVLKALLS  117 (321)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            457999999999999999999988654

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=97.65  E-value=3.7e-06  Score=77.85  Aligned_cols=36  Identities=14%  Similarity=0.101  Sum_probs=32.4

Q ss_pred             ccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHH-HhCC
Q 038053            9 VIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNS-ILGR   46 (231)
Q Consensus         9 ~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~-l~g~   46 (231)
                      ..|++++++++.|  .+++|+|+||||||||++. |+|.
T Consensus       511 ~~L~~vsl~i~~G--eiv~I~G~nGSGKSTLl~~~L~g~  547 (842)
T 2vf7_A          511 NNLDNLDVRFPLG--VMTSVTGVSGSGKSTLVSQALVDA  547 (842)
T ss_dssp             TTEEEEEEEEESS--SEEEEECCTTSSHHHHCCCCCHHH
T ss_pred             cccccceEEEcCC--CEEEEEcCCCcCHHHHHHHHHHHH
Confidence            3689999999999  9999999999999999996 6644

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.64  E-value=2.8e-05  Score=59.83  Aligned_cols=29  Identities=14%  Similarity=0.187  Sum_probs=24.9

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053           18 SSSNGKRTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus        18 i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      ..++  ..|+|+|++|||||||++.|.+...
T Consensus        19 ~~~~--~~i~i~G~~GsGKstl~~~l~~~~~   47 (201)
T 1rz3_A           19 TAGR--LVLGIDGLSRSGKTTLANQLSQTLR   47 (201)
T ss_dssp             CSSS--EEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             cCCC--eEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4455  8999999999999999999988653

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.64  E-value=0.00012  Score=63.00  Aligned_cols=97  Identities=21%  Similarity=0.139  Sum_probs=54.5

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHh-------CCCccccccCCCCc---------------ceeee--------e-e-eE
Q 038053           20 SNGKRTVVLLGRTGNGKSATGNSIL-------GRKAFKASADSSGV---------------TKTCE--------M-K-TT   67 (231)
Q Consensus        20 ~g~~~~i~lvG~~g~GKSTLin~l~-------g~~~~~~~~~~~~~---------------t~~~~--------~-~-~~   67 (231)
                      ++++.+|+++|++|+||||+...|+       |..+.....+....               .....        . . ..
T Consensus        97 ~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l  176 (433)
T 2xxa_A           97 AQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAAL  176 (433)
T ss_dssp             SSSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHH
Confidence            3445799999999999999998888       65433221111000               00000        0 0 00


Q ss_pred             -Eee-CCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCC
Q 038053           68 -VLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRF  121 (231)
Q Consensus        68 -~~~-~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~  121 (231)
                       ... .+..++|+||||.....   ..+..++....  ....++.+++|+|+....
T Consensus       177 ~~~~~~~~D~VIIDTpG~l~~~---~~l~~~L~~~~--~~~~p~~vllVvda~~g~  227 (433)
T 2xxa_A          177 KEAKLKFYDVLLVDTAGRLHVD---EAMMDEIKQVH--ASINPVETLFVVDAMTGQ  227 (433)
T ss_dssp             HHHHHTTCSEEEEECCCCCTTC---HHHHHHHHHHH--HHSCCSEEEEEEETTBCT
T ss_pred             HHHHhCCCCEEEEECCCccccc---HHHHHHHHHHH--HhhcCcceeEEeecchhH
Confidence             001 35678999999976421   23333333221  124688999999987443

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=97.62  E-value=2.1e-05  Score=73.49  Aligned_cols=31  Identities=19%  Similarity=0.091  Sum_probs=29.0

Q ss_pred             cccCCCcccCCCCCCceEEEEEcCCCCCHHHHH
Q 038053            8 RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATG   40 (231)
Q Consensus         8 ~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLi   40 (231)
                      ...|++++++++.|  ..++|+|+||||||||+
T Consensus       597 ~~~Lk~Vsl~I~~G--eiv~I~G~SGSGKSTLl  627 (916)
T 3pih_A          597 HNNLKNIDVEIPLG--VFVCVTGVSGSGKSSLV  627 (916)
T ss_dssp             STTCCSEEEEEESS--SEEEEECSTTSSHHHHH
T ss_pred             cccccccceEEcCC--cEEEEEccCCCChhhhH
Confidence            35699999999999  99999999999999997

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.62  E-value=9.9e-06  Score=60.93  Aligned_cols=26  Identities=12%  Similarity=0.163  Sum_probs=23.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAF   49 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~   49 (231)
                      ..++|+|++|||||||++.|++...+
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~   28 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRE   28 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            58999999999999999999998653

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.61  E-value=3.5e-05  Score=59.28  Aligned_cols=23  Identities=30%  Similarity=0.349  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      .+|+|+|++||||||+.+.|.+.
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~l   25 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTDL   25 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHTT
T ss_pred             cEEEEECCCCCCHHHHHHHHHHC
Confidence            57999999999999999999883

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.61  E-value=1.3e-05  Score=61.06  Aligned_cols=23  Identities=26%  Similarity=0.479  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCC
Q 038053           25 TVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      -|+|+||+|||||||++.|+...
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            38899999999999999998654

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=97.59  E-value=4.1e-05  Score=63.26  Aligned_cols=24  Identities=29%  Similarity=0.403  Sum_probs=22.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      ..++|+|++|||||||+|.|+|..
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhc
Confidence            689999999999999999999875

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.59  E-value=3.7e-05  Score=59.15  Aligned_cols=28  Identities=21%  Similarity=0.281  Sum_probs=24.0

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           18 SSSNGKRTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        18 i~~g~~~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      ..+|  ..|+|+|+||||||||++.|....
T Consensus         9 ~~~~--~~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A            9 MARI--PPLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             CCCC--CCEEEECCTTSCHHHHHHHHHHHC
T ss_pred             cccC--CEEEEECCCCCCHHHHHHHHHHhC
Confidence            3456  899999999999999999998654

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.58  E-value=3e-05  Score=60.41  Aligned_cols=24  Identities=17%  Similarity=0.303  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      .+|+|+|++||||||+.+.|.+..
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~~~   29 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAEAL   29 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            689999999999999999998753

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=97.55  E-value=5.1e-05  Score=62.78  Aligned_cols=34  Identities=15%  Similarity=0.145  Sum_probs=29.9

Q ss_pred             CCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           12 GDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        12 ~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      .++++.+.++  ..|+++|+||+||||++..|++..
T Consensus        96 ~~l~~~~~~~--~vI~ivG~~G~GKTT~~~~LA~~l  129 (320)
T 1zu4_A           96 YRIDFKENRL--NIFMLVGVNGTGKTTSLAKMANYY  129 (320)
T ss_dssp             CCCCCCTTSC--EEEEEESSTTSSHHHHHHHHHHHH
T ss_pred             cCccccCCCC--eEEEEECCCCCCHHHHHHHHHHHH
Confidence            5788888887  999999999999999999988654

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.54  E-value=5.8e-05  Score=59.37  Aligned_cols=37  Identities=19%  Similarity=0.150  Sum_probs=25.3

Q ss_pred             cCCCcccCCC---CCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053           10 IDGDWKPTSS---SNGKRTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus        10 ~~~~~~~~i~---~g~~~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      -+.+.++.+.   .|  ..|+|.|++||||||+++.|.....
T Consensus        12 ~~~~~~~~~~~~~~g--~~i~i~G~~GsGKsT~~~~l~~~l~   51 (229)
T 4eaq_A           12 DLGTENLYFQSNAMS--AFITFEGPEGSGKTTVINEVYHRLV   51 (229)
T ss_dssp             --------CCCCCCC--EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CccCCCeeEeecCCC--eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            3556666665   67  8999999999999999999987643

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.51  E-value=4.4e-05  Score=63.18  Aligned_cols=30  Identities=23%  Similarity=0.186  Sum_probs=26.0

Q ss_pred             CcccCCCCCCceEEEEEcCCCCCHHHHHHHHhC
Q 038053           13 DWKPTSSSNGKRTVVLLGRTGNGKSATGNSILG   45 (231)
Q Consensus        13 ~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g   45 (231)
                      ++++.+.+|   ..+|+|+||||||||+.+|..
T Consensus        17 ~~~l~~~~g---~~~i~G~NGsGKS~ll~ai~~   46 (322)
T 1e69_A           17 PSLIGFSDR---VTAIVGPNGSGKSNIIDAIKW   46 (322)
T ss_dssp             CEEEECCSS---EEEEECCTTTCSTHHHHHHHH
T ss_pred             CeEEecCCC---cEEEECCCCCcHHHHHHHHHH
Confidence            456777776   899999999999999999984

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=97.51  E-value=5.3e-05  Score=58.45  Aligned_cols=28  Identities=25%  Similarity=0.361  Sum_probs=22.6

Q ss_pred             cccCCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 038053           14 WKPTSSSNGKRTVVLLGRTGNGKSATGNSIL   44 (231)
Q Consensus        14 ~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~   44 (231)
                      ..+.+.+|   ..+|+|+||+||||++.+|.
T Consensus        17 ~~i~f~~~---~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           17 TVVEFKEG---INLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEECCSE---EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEeCCC---eEEEEcCCCCCHHHHHHHHH
Confidence            34455554   88999999999999999875

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.47  E-value=4.6e-05  Score=58.45  Aligned_cols=22  Identities=27%  Similarity=0.403  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 038053           24 RTVVLLGRTGNGKSATGNSILG   45 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g   45 (231)
                      .+|+|+|++||||||+.+.|.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            4799999999999999999987

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.46  E-value=5.6e-05  Score=58.40  Aligned_cols=34  Identities=9%  Similarity=-0.100  Sum_probs=28.2

Q ss_pred             cCCCccc-CCCCCCceEEEEEcCCCCCHHHHHHHHhC
Q 038053           10 IDGDWKP-TSSSNGKRTVVLLGRTGNGKSATGNSILG   45 (231)
Q Consensus        10 ~~~~~~~-~i~~g~~~~i~lvG~~g~GKSTLin~l~g   45 (231)
                      .|+.+-. .+++|  ..++|+|+||+|||||++.|++
T Consensus         8 ~LD~~l~Ggi~~G--~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A            8 SLDSLLGGGFAPG--VLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             HHHHHTTSSBCTT--SEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHhhcCCCcCC--EEEEEECCCCCCHHHHHHHHHH
Confidence            3444433 67888  8999999999999999999987

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=97.46  E-value=4.2e-05  Score=60.06  Aligned_cols=29  Identities=10%  Similarity=0.155  Sum_probs=26.0

Q ss_pred             cCCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 038053           16 PTSSSNGKRTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        16 ~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      --+++|  ..++|+|+||+|||||+..|++.
T Consensus        19 ggi~~G--~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           19 GGIETG--SITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             TSEETT--SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCcCC--eEEEEECCCCCcHHHHHHHHHHH
Confidence            356788  89999999999999999999984

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=97.42  E-value=0.00065  Score=58.47  Aligned_cols=25  Identities=24%  Similarity=0.199  Sum_probs=21.2

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHh
Q 038053           20 SNGKRTVVLLGRTGNGKSATGNSIL   44 (231)
Q Consensus        20 ~g~~~~i~lvG~~g~GKSTLin~l~   44 (231)
                      ..+...|+++|+.++|||+|+|.|+
T Consensus        64 ~~~v~vvsv~G~~~~gks~l~N~ll   88 (457)
T 4ido_A           64 DKEVVAVSVAGAFRKGKSFLMDFML   88 (457)
T ss_dssp             TSBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred             CCceEEEEEECCCCCchhHHHHHHH
Confidence            4445788999999999999999775

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=97.41  E-value=5.1e-05  Score=62.04  Aligned_cols=33  Identities=18%  Similarity=0.090  Sum_probs=27.9

Q ss_pred             CCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053           12 GDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus        12 ~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      +++++.  ++  ..|+++|++|+||||++..|++...
T Consensus        91 ~~i~~~--~~--~~i~i~g~~G~GKTT~~~~la~~~~  123 (295)
T 1ls1_A           91 RLPVLK--DR--NLWFLVGLQGSGKTTTAAKLALYYK  123 (295)
T ss_dssp             CCCCCC--SS--EEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred             ceeecC--CC--eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            567777  56  8999999999999999999987643

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.41  E-value=0.0001  Score=55.04  Aligned_cols=23  Identities=26%  Similarity=0.553  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhC
Q 038053           23 KRTVVLLGRTGNGKSATGNSILG   45 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g   45 (231)
                      +..|+|+|+|||||||+.+.|..
T Consensus         2 ~~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            2 KKIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEecCCCCCHHHHHHHHHh
Confidence            36899999999999999999986

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.40  E-value=8.3e-05  Score=55.82  Aligned_cols=24  Identities=29%  Similarity=0.314  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      ..|+|+|.+||||||+.+.|.+..
T Consensus         6 ~~i~l~G~~GsGKST~~~~L~~~l   29 (179)
T 2pez_A            6 CTVWLTGLSGAGKTTVSMALEEYL   29 (179)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHH
Confidence            899999999999999999998753

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.40  E-value=7.9e-05  Score=56.10  Aligned_cols=24  Identities=13%  Similarity=0.230  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      ..++|+|++|||||||++.|++..
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~l   30 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPAL   30 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhc
Confidence            589999999999999999999763

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=97.40  E-value=8e-06  Score=64.29  Aligned_cols=26  Identities=27%  Similarity=0.244  Sum_probs=23.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAF   49 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~   49 (231)
                      ..++|+|+||||||||+++|+|...+
T Consensus        28 ~~~~i~GpnGsGKSTll~~i~g~~~~   53 (227)
T 1qhl_A           28 LVTTLSGGNGAGKSTTMAAFVTALIP   53 (227)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhccccc
Confidence            47899999999999999999998763

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.40  E-value=9.8e-05  Score=60.68  Aligned_cols=33  Identities=12%  Similarity=0.237  Sum_probs=26.6

Q ss_pred             cccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053           14 WKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus        14 ~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      +++...++  ..|+++|+||+||||++..|++...
T Consensus        97 ~~~~~~~~--~vi~ivG~~GsGKTTl~~~LA~~l~  129 (306)
T 1vma_A           97 LNVPPEPP--FVIMVVGVNGTGKTTSCGKLAKMFV  129 (306)
T ss_dssp             CCCCSSSC--EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CcccCCCC--eEEEEEcCCCChHHHHHHHHHHHHH
Confidence            34445555  8999999999999999999987643

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.39  E-value=9.1e-05  Score=60.40  Aligned_cols=27  Identities=26%  Similarity=0.267  Sum_probs=24.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053           22 GKRTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus        22 ~~~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      .+..|+|+|++|||||||.+.|.+...
T Consensus        30 ~~~ii~I~G~sGsGKSTla~~L~~~l~   56 (290)
T 1odf_A           30 CPLFIFFSGPQGSGKSFTSIQIYNHLM   56 (290)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence            348999999999999999999988764

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.38  E-value=8.1e-05  Score=57.03  Aligned_cols=23  Identities=35%  Similarity=0.700  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      ..|+|+|++||||||+.+.|.+.
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            68999999999999999999754

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=97.35  E-value=8.5e-05  Score=63.88  Aligned_cols=31  Identities=19%  Similarity=0.176  Sum_probs=25.7

Q ss_pred             cCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053           16 PTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus        16 ~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      +.+.++  ..++|+|+||+|||||+++|++...
T Consensus        21 ~~~~~~--~~~~i~G~nG~GKstll~ai~~~~~   51 (430)
T 1w1w_A           21 VGFGES--NFTSIIGPNGSGKSNMMDAISFVLG   51 (430)
T ss_dssp             EECTTC--SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             EEecCC--CEEEEECCCCCCHHHHHHHHHhhhc
Confidence            345555  7999999999999999999987553

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.34  E-value=0.00012  Score=54.32  Aligned_cols=23  Identities=17%  Similarity=0.131  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      ..|+|+|++||||||+.+.|...
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999754

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=97.33  E-value=7.6e-05  Score=65.36  Aligned_cols=38  Identities=18%  Similarity=0.267  Sum_probs=32.7

Q ss_pred             CCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053            6 GERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus         6 ~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      .....+.++++.+++|    +.|+|+||+|||||+++|.+..
T Consensus        51 ~~~~~~~~lg~~ip~G----vLL~GppGtGKTtLaraIa~~~   88 (499)
T 2dhr_A           51 KNPSRFHEMGARIPKG----VLLVGPPGVGKTHLARAVAGEA   88 (499)
T ss_dssp             HCGGGTTTTSCCCCSE----EEEECSSSSSHHHHHHHHHHHT
T ss_pred             hchhhhhhccCCCCce----EEEECCCCCCHHHHHHHHHHHh
Confidence            3456788888888887    9999999999999999999864

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.32  E-value=0.00012  Score=54.13  Aligned_cols=20  Identities=25%  Similarity=0.557  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSI   43 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l   43 (231)
                      ..|+|+|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            47999999999999999999

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.32  E-value=0.00018  Score=54.34  Aligned_cols=29  Identities=21%  Similarity=0.243  Sum_probs=24.8

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           17 TSSSNGKRTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        17 ~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      ...+|  ..|+|+|.+||||||+.+.|....
T Consensus         9 ~~~~~--~~i~l~G~~GsGKsT~~~~L~~~l   37 (186)
T 2yvu_A            9 CIEKG--IVVWLTGLPGSGKTTIATRLADLL   37 (186)
T ss_dssp             CCSCC--EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ccCCC--cEEEEEcCCCCCHHHHHHHHHHHH
Confidence            34466  899999999999999999998764

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.32  E-value=0.00012  Score=55.06  Aligned_cols=22  Identities=27%  Similarity=0.596  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 038053           24 RTVVLLGRTGNGKSATGNSILG   45 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g   45 (231)
                      ..|+|+|++||||||+.+.|..
T Consensus         5 ~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            5 QAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            7899999999999999999974

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=97.31  E-value=7.7e-05  Score=62.15  Aligned_cols=26  Identities=27%  Similarity=0.455  Sum_probs=21.4

Q ss_pred             cCCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 038053           16 PTSSSNGKRTVVLLGRTGNGKSATGNSIL   44 (231)
Q Consensus        16 ~~i~~g~~~~i~lvG~~g~GKSTLin~l~   44 (231)
                      +.+.+|   ..+|+|+||+|||||+.+|+
T Consensus        19 i~f~~~---~~~i~G~NGsGKS~lleAi~   44 (339)
T 3qkt_A           19 VEFKEG---INLIIGQNGSGKSSLLDAIL   44 (339)
T ss_dssp             EECCSE---EEEEECCTTSSHHHHHHHHH
T ss_pred             EcCCCC---eEEEECCCCCCHHHHHHHHH
Confidence            344555   78999999999999999874

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=97.31  E-value=5.5e-05  Score=67.08  Aligned_cols=30  Identities=27%  Similarity=0.371  Sum_probs=26.8

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053           17 TSSSNGKRTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus        17 ~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      .+.+|  ..|+|+|+||||||||+++|.+...
T Consensus       365 ~~~~G--~iI~LiG~sGSGKSTLar~La~~L~  394 (552)
T 3cr8_A          365 RERQG--FTVFFTGLSGAGKSTLARALAARLM  394 (552)
T ss_dssp             GGGSC--EEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred             ccccc--eEEEEECCCCChHHHHHHHHHHhhc
Confidence            45678  8999999999999999999998865

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=97.30  E-value=7.4e-05  Score=60.39  Aligned_cols=29  Identities=17%  Similarity=0.185  Sum_probs=25.8

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           17 TSSSNGKRTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        17 ~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      .+++|  ..++|+|+||+|||||+..|++..
T Consensus        26 gl~~G--~i~~i~G~~GsGKTtl~~~l~~~~   54 (279)
T 1nlf_A           26 NMVAG--TVGALVSPGGAGKSMLALQLAAQI   54 (279)
T ss_dssp             TEETT--SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CccCC--CEEEEEcCCCCCHHHHHHHHHHHH
Confidence            46788  899999999999999999998743

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=97.29  E-value=8e-05  Score=62.35  Aligned_cols=31  Identities=13%  Similarity=0.192  Sum_probs=28.8

Q ss_pred             ccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           15 KPTSSSNGKRTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        15 ~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      ...+++|  ..++|+|+||+|||||++.|++..
T Consensus       125 ~ggi~~G--~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          125 GGGIETQ--AITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             TSSEESS--EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             cCCCCCC--eEEEEECCCCCCHHHHHHHHHHHh
Confidence            5788999  999999999999999999999876

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.29  E-value=0.00016  Score=53.94  Aligned_cols=24  Identities=25%  Similarity=0.349  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      ..|.|+|++||||||+.+.|....
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~l   27 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhc
Confidence            689999999999999999998653

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.28  E-value=6.3e-05  Score=62.81  Aligned_cols=38  Identities=21%  Similarity=0.242  Sum_probs=31.8

Q ss_pred             cCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           10 IDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        10 ~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      +++.+++.+.+|....|+|+|++|+||||+.+.|++..
T Consensus        11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l   48 (359)
T 2ga8_A           11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII   48 (359)
T ss_dssp             HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence            45667788888855669999999999999999998764

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.23  E-value=0.00022  Score=53.92  Aligned_cols=22  Identities=14%  Similarity=0.401  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 038053           24 RTVVLLGRTGNGKSATGNSILG   45 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g   45 (231)
                      ..|.|+|++||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            6 ALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            7899999999999999999864

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=97.22  E-value=0.00019  Score=55.75  Aligned_cols=24  Identities=17%  Similarity=0.322  Sum_probs=21.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCC
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      ..+|+|+|.+|||||||++.+++.
T Consensus        38 ~~~i~ivG~~gvGKTtl~~~l~~~   61 (226)
T 2hf9_A           38 VVAFDFMGAIGSGKTLLIEKLIDN   61 (226)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Confidence            379999999999999999999865

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.22  E-value=0.00019  Score=55.48  Aligned_cols=30  Identities=20%  Similarity=0.195  Sum_probs=25.4

Q ss_pred             cCCCCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           16 PTSSSNGKRTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        16 ~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      +.+.+|  ..|+|+|.+||||||+.+.|.+..
T Consensus        20 ~~~~~~--~~i~~~G~~GsGKsT~~~~l~~~l   49 (211)
T 1m7g_A           20 LRNQRG--LTIWLTGLSASGKSTLAVELEHQL   49 (211)
T ss_dssp             HHTSSC--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ccCCCC--CEEEEECCCCCCHHHHHHHHHHHh
Confidence            345667  899999999999999999997653

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=97.21  E-value=3.5e-05  Score=69.19  Aligned_cols=42  Identities=26%  Similarity=0.417  Sum_probs=37.6

Q ss_pred             CCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053            5 MGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus         5 ~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      +|...+++.+++.+.+|  ..++|+|+||+|||||+++|.+...
T Consensus        44 ~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~   85 (604)
T 3k1j_A           44 IGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLP   85 (604)
T ss_dssp             CSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred             ECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCC
Confidence            56777888889999999  8999999999999999999999764

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.20  E-value=0.00022  Score=53.74  Aligned_cols=23  Identities=22%  Similarity=0.447  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      ..|+|.|++||||||+.+.|...
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~~   26 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMDN   26 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            68999999999999999999753

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.17  E-value=0.00017  Score=58.89  Aligned_cols=25  Identities=32%  Similarity=0.500  Sum_probs=22.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      .+|+|+|+||+||||++..|++...
T Consensus       106 ~vi~lvG~~GsGKTTl~~~LA~~l~  130 (296)
T 2px0_A          106 KYIVLFGSTGAGKTTTLAKLAAISM  130 (296)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHH
Confidence            7999999999999999999986543

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.17  E-value=0.00026  Score=53.07  Aligned_cols=22  Identities=27%  Similarity=0.581  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 038053           24 RTVVLLGRTGNGKSATGNSILG   45 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g   45 (231)
                      ..|+|+|++||||||+.+.|..
T Consensus        12 ~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           12 PNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCHHHHHHHHHH
Confidence            6899999999999999999983

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.17  E-value=0.00023  Score=54.21  Aligned_cols=22  Identities=27%  Similarity=0.555  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q 038053           25 TVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      .|+|+|.+||||||+.+.|...
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~   23 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKK   23 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHh
Confidence            6999999999999999999864

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.16  E-value=3.9e-05  Score=63.81  Aligned_cols=43  Identities=14%  Similarity=0.191  Sum_probs=34.1

Q ss_pred             CCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053            5 MGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus         5 ~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      +|...+++.++..+.+|....+.|.|+||+||||+++++++..
T Consensus        28 ~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l   70 (340)
T 1sxj_C           28 YGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI   70 (340)
T ss_dssp             CSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            4556667777777888843349999999999999999998764

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.14  E-value=0.00026  Score=53.23  Aligned_cols=23  Identities=26%  Similarity=0.546  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      ..|+|+|++||||||+.+.|...
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~~   28 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAKL   28 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            68999999999999999999643

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.13  E-value=0.00029  Score=53.18  Aligned_cols=22  Identities=32%  Similarity=0.492  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 038053           24 RTVVLLGRTGNGKSATGNSILG   45 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g   45 (231)
                      ..|+|+|.+||||||+.+.|..
T Consensus         4 ~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            4 LVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            7899999999999999998864

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.10  E-value=0.00023  Score=56.55  Aligned_cols=23  Identities=30%  Similarity=0.612  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCC
Q 038053           25 TVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      -+.|+|+||+|||||+++|.+..
T Consensus        47 ~vll~G~~GtGKT~la~~la~~~   69 (257)
T 1lv7_A           47 GVLMVGPPGTGKTLLAKAIAGEA   69 (257)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHHHc
Confidence            49999999999999999998754

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.10  E-value=0.00035  Score=53.25  Aligned_cols=24  Identities=21%  Similarity=0.284  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      ..|+|+|++||||||+.+.|....
T Consensus         5 ~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            5 ALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHHH
Confidence            789999999999999999998754

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=97.10  E-value=0.00031  Score=59.32  Aligned_cols=33  Identities=12%  Similarity=0.119  Sum_probs=30.1

Q ss_pred             CcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           13 DWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        13 ~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      |+.+++.+|  .+++|+|++|+|||||++.|.+..
T Consensus       166 D~~~pi~rG--Qr~~IvG~sG~GKTtLl~~Iar~i  198 (422)
T 3ice_A          166 DLASPIGRG--QRGLIVAPPKAGKTMLLQNIAQSI  198 (422)
T ss_dssp             HHHSCCBTT--CEEEEECCSSSSHHHHHHHHHHHH
T ss_pred             eeeeeecCC--cEEEEecCCCCChhHHHHHHHHHH
Confidence            788999999  999999999999999999988653

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.09  E-value=0.00033  Score=53.29  Aligned_cols=25  Identities=20%  Similarity=0.271  Sum_probs=22.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCC
Q 038053           22 GKRTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        22 ~~~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      .+..|+|+|++||||||+.+.|...
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC
Confidence            3479999999999999999999865

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=97.09  E-value=0.00045  Score=51.54  Aligned_cols=24  Identities=33%  Similarity=0.487  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      ..+.|.|++|+|||||++.+....
T Consensus        44 ~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           44 NNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHHH
Confidence            678999999999999999998764

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.08  E-value=0.00031  Score=52.92  Aligned_cols=24  Identities=21%  Similarity=0.207  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      ..|+|+|++||||||+.+.|....
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l   25 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEIL   25 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHH
Confidence            479999999999999999997643

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.08  E-value=0.00036  Score=53.40  Aligned_cols=23  Identities=22%  Similarity=0.320  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      ..|+|.|++||||||+.+.|...
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~~   27 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKDW   27 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            78999999999999999999754

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.07  E-value=0.00024  Score=56.59  Aligned_cols=23  Identities=22%  Similarity=0.329  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      ..|.|+|+|||||||+.+.|...
T Consensus        33 ~~i~l~G~~GsGKSTla~~L~~~   55 (253)
T 2p5t_B           33 IAILLGGQSGAGKTTIHRIKQKE   55 (253)
T ss_dssp             EEEEEESCGGGTTHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            89999999999999999998754

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.05  E-value=0.00037  Score=52.72  Aligned_cols=22  Identities=23%  Similarity=0.521  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 038053           24 RTVVLLGRTGNGKSATGNSILG   45 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g   45 (231)
                      ..|+|+|++||||||+.+.|..
T Consensus        10 ~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A           10 NIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            7999999999999999999864

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.05  E-value=0.0004  Score=53.77  Aligned_cols=22  Identities=36%  Similarity=0.519  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 038053           24 RTVVLLGRTGNGKSATGNSILG   45 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g   45 (231)
                      ..|+|.|.+||||||+.+.|..
T Consensus         5 ~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            5 YIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            7899999999999999999976

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=97.04  E-value=4.3e-05  Score=67.75  Aligned_cols=36  Identities=19%  Similarity=0.208  Sum_probs=29.2

Q ss_pred             cCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053           10 IDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus        10 ~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      ++.++++.+ +|  ..++|+|+||+|||||+++|.+...
T Consensus        98 ~l~~~~~~~-~g--~~vll~Gp~GtGKTtlar~ia~~l~  133 (543)
T 3m6a_A           98 AVQKLTKSL-KG--PILCLAGPPGVGKTSLAKSIAKSLG  133 (543)
T ss_dssp             HHHHHSSSC-CS--CEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred             HHHHhcccC-CC--CEEEEECCCCCCHHHHHHHHHHhcC
Confidence            445566666 56  7999999999999999999988653

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.03  E-value=0.00054  Score=52.29  Aligned_cols=25  Identities=20%  Similarity=0.416  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCC
Q 038053           22 GKRTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        22 ~~~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      .+..|+|+|.+||||||+.+.|...
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~~   38 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVKD   38 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3478999999999999999998743

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.02  E-value=0.00033  Score=52.29  Aligned_cols=23  Identities=26%  Similarity=0.554  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      .+|+|+|++||||||+.+.|...
T Consensus         5 ~~i~i~G~~GsGKsTla~~La~~   27 (175)
T 1via_A            5 KNIVFIGFMGSGKSTLARALAKD   27 (175)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            36999999999999999999754

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=97.02  E-value=0.00023  Score=62.74  Aligned_cols=32  Identities=16%  Similarity=0.197  Sum_probs=28.4

Q ss_pred             ccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053           15 KPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus        15 ~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      ...+++|  ..++|+|+||+|||||++.|+|...
T Consensus       275 ~g~i~~G--~i~~i~G~~GsGKSTLl~~l~g~~~  306 (525)
T 1tf7_A          275 GGGFFKD--SIILATGATGTGKTLLVSRFVENAC  306 (525)
T ss_dssp             TSSEESS--CEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCCCCCC--cEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            3478888  8999999999999999999998754

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.00  E-value=0.00044  Score=53.11  Aligned_cols=23  Identities=26%  Similarity=0.374  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      ..|+|.|.+||||||+.+.|...
T Consensus        10 ~~I~l~G~~GsGKsT~~~~L~~~   32 (215)
T 1nn5_A           10 ALIVLEGVDRAGKSTQSRKLVEA   32 (215)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            79999999999999999999753

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.99  E-value=0.00044  Score=53.03  Aligned_cols=23  Identities=22%  Similarity=0.352  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      ..|+|.|.+||||||+.+.|...
T Consensus        11 ~~I~l~G~~GsGKST~~~~L~~~   33 (212)
T 2wwf_A           11 KFIVFEGLDRSGKSTQSKLLVEY   33 (212)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            79999999999999999999753

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=96.98  E-value=0.00013  Score=64.25  Aligned_cols=33  Identities=18%  Similarity=0.165  Sum_probs=28.6

Q ss_pred             ccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 038053            9 VIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSIL   44 (231)
Q Consensus         9 ~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~   44 (231)
                      ..++++++.+.+|   ..+|+|+||+|||||+.+|.
T Consensus        49 ~~~~~~~l~f~~g---~n~i~G~NGaGKS~lleAl~   81 (517)
T 4ad8_A           49 ATITQLELELGGG---FCAFTGETGAGKSIIVDALG   81 (517)
T ss_dssp             TTBSCEEEECCCS---EEEEEESHHHHHHHHTHHHH
T ss_pred             cceeeEEEecCCC---eEEEEcCCCCCHHHHHHHHH
Confidence            3567788888887   88999999999999999984

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.98  E-value=0.00041  Score=56.40  Aligned_cols=23  Identities=26%  Similarity=0.498  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhC
Q 038053           23 KRTVVLLGRTGNGKSATGNSILG   45 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g   45 (231)
                      +..|.|+|+|||||||+.+.|..
T Consensus        33 ~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           33 PTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            38999999999999999999974

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.98  E-value=0.00049  Score=51.46  Aligned_cols=23  Identities=13%  Similarity=0.179  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      ..++|+|++|||||||++.|+..
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~   27 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAA   27 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            68999999999999999998875

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.98  E-value=0.00044  Score=55.08  Aligned_cols=23  Identities=22%  Similarity=0.244  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      ..|+|+|+||||||||.+.|++.
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~   24 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQE   24 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhc
Confidence            47899999999999999999754

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.97  E-value=0.00043  Score=53.37  Aligned_cols=21  Identities=33%  Similarity=0.683  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q 038053           25 TVVLLGRTGNGKSATGNSILG   45 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g   45 (231)
                      +|+|+|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999954

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.97  E-value=0.00049  Score=53.36  Aligned_cols=23  Identities=30%  Similarity=0.547  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      ..|+|+|++||||||+.+.|...
T Consensus         5 ~~I~l~G~~GsGKsT~a~~La~~   27 (220)
T 1aky_A            5 IRMVLIGPPGAGKGTQAPNLQER   27 (220)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            78999999999999999998653

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.97  E-value=0.00043  Score=52.47  Aligned_cols=23  Identities=17%  Similarity=0.586  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      ..|+|+|++||||||+.+.|...
T Consensus        13 ~~I~l~G~~GsGKsT~a~~L~~~   35 (199)
T 2bwj_A           13 KIIFIIGGPGSGKGTQCEKLVEK   35 (199)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            68999999999999999999653

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.97  E-value=0.0005  Score=52.50  Aligned_cols=23  Identities=30%  Similarity=0.494  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhC
Q 038053           23 KRTVVLLGRTGNGKSATGNSILG   45 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g   45 (231)
                      +..|+|+|++||||||+.+.|..
T Consensus        20 ~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           20 HMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            37999999999999999999864

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.96  E-value=0.00048  Score=54.27  Aligned_cols=22  Identities=27%  Similarity=0.415  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 038053           24 RTVVLLGRTGNGKSATGNSILG   45 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g   45 (231)
                      ..|+|+|++||||||+.+.|..
T Consensus        10 ~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A           10 LVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999983

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.96  E-value=0.00053  Score=53.86  Aligned_cols=26  Identities=19%  Similarity=0.262  Sum_probs=22.5

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhC
Q 038053           18 SSSNGKRTVVLLGRTGNGKSATGNSILG   45 (231)
Q Consensus        18 i~~g~~~~i~lvG~~g~GKSTLin~l~g   45 (231)
                      ...+  .+|+|+|++||||||+.+.|.+
T Consensus        13 ~~~~--~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           13 KMKT--IQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             -CCC--CEEEEECSSCSSHHHHHHHHHH
T ss_pred             ccCC--cEEEEECCCCCCHHHHHHHHHH
Confidence            3455  8999999999999999999986

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.95  E-value=0.00051  Score=51.71  Aligned_cols=22  Identities=32%  Similarity=0.561  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 038053           24 RTVVLLGRTGNGKSATGNSILG   45 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g   45 (231)
                      ..|+|+|.+||||||+.+.|..
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999864

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.95  E-value=0.00045  Score=53.85  Aligned_cols=22  Identities=27%  Similarity=0.513  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 038053           24 RTVVLLGRTGNGKSATGNSILG   45 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g   45 (231)
                      ..|+|+|++||||||+.+.|..
T Consensus         8 ~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            8 LRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            7899999999999999999974

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=96.94  E-value=0.00028  Score=59.50  Aligned_cols=29  Identities=21%  Similarity=0.402  Sum_probs=23.7

Q ss_pred             CcccCCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 038053           13 DWKPTSSSNGKRTVVLLGRTGNGKSATGNSIL   44 (231)
Q Consensus        13 ~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~   44 (231)
                      +..+.+.+|   ..+|+|+||+||||++.+|+
T Consensus        18 ~~~i~f~~g---l~vi~G~NGaGKT~ileAI~   46 (371)
T 3auy_A           18 NSRIKFEKG---IVAIIGENGSGKSSIFEAVF   46 (371)
T ss_dssp             EEEEECCSE---EEEEEECTTSSHHHHHHHHH
T ss_pred             ceEEecCCC---eEEEECCCCCCHHHHHHHHH
Confidence            345556665   89999999999999999875

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.94  E-value=0.00042  Score=53.84  Aligned_cols=23  Identities=22%  Similarity=0.323  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      ..|+|+|++||||||+.+.|...
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La~~   28 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIKTK   28 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            68999999999999999999753

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=96.94  E-value=0.0003  Score=60.33  Aligned_cols=32  Identities=19%  Similarity=0.097  Sum_probs=26.6

Q ss_pred             CCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           12 GDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        12 ~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      .++++.  ++  ..|+++|++|+||||++..|++..
T Consensus        91 ~~i~l~--~~--~vi~i~G~~GsGKTT~~~~LA~~l  122 (425)
T 2ffh_A           91 RLPVLK--DR--NLWFLVGLQGSGKTTTAAKLALYY  122 (425)
T ss_dssp             CCCCCC--SS--EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ccccCC--CC--eEEEEECCCCCCHHHHHHHHHHHH
Confidence            566666  45  799999999999999999988654

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.93  E-value=0.00049  Score=53.10  Aligned_cols=21  Identities=38%  Similarity=0.737  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q 038053           25 TVVLLGRTGNGKSATGNSILG   45 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g   45 (231)
                      +|+|+|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999964

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.93  E-value=0.00057  Score=54.08  Aligned_cols=22  Identities=23%  Similarity=0.442  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 038053           24 RTVVLLGRTGNGKSATGNSILG   45 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g   45 (231)
                      .+|+|+|++||||||+.+.|..
T Consensus        30 ~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           30 GRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            8999999999999999999974

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.93  E-value=0.00043  Score=52.00  Aligned_cols=22  Identities=36%  Similarity=0.602  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 038053           24 RTVVLLGRTGNGKSATGNSILG   45 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g   45 (231)
                      .+|+|+|.+||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999864

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.92  E-value=0.00019  Score=55.26  Aligned_cols=23  Identities=22%  Similarity=0.332  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCC
Q 038053           25 TVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      .|+|+|++||||||+++.|....
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l   24 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAF   24 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHH
Confidence            68999999999999999998654

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.90  E-value=0.00043  Score=51.80  Aligned_cols=23  Identities=26%  Similarity=0.403  Sum_probs=16.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      ..|+|.|.+||||||+.+.|...
T Consensus         6 ~~I~l~G~~GsGKST~a~~La~~   28 (183)
T 2vli_A            6 PIIWINGPFGVGKTHTAHTLHER   28 (183)
T ss_dssp             CEEEEECCC----CHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            78999999999999999999743

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.86  E-value=0.00069  Score=54.10  Aligned_cols=22  Identities=27%  Similarity=0.422  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 038053           24 RTVVLLGRTGNGKSATGNSILG   45 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g   45 (231)
                      ..|+|+|.+||||||+.+.|..
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            7899999999999999999874

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.86  E-value=0.00061  Score=50.44  Aligned_cols=23  Identities=17%  Similarity=0.484  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      ..|+|+|.+||||||+.+.|...
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~   25 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARA   25 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999998653

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.86  E-value=0.00031  Score=55.09  Aligned_cols=29  Identities=24%  Similarity=0.321  Sum_probs=24.0

Q ss_pred             ccCCCCCCceEEEEEcCCCCCHHHHHHHHhC
Q 038053           15 KPTSSSNGKRTVVLLGRTGNGKSATGNSILG   45 (231)
Q Consensus        15 ~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g   45 (231)
                      .--+++|  ..++|+|+||+|||||+..++.
T Consensus        17 ~gGl~~G--~~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           17 HGGIPER--NVVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             TTSEETT--CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCCCC--cEEEEECCCCCCHHHHHHHHHH
Confidence            4567888  8999999999999999765543

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.84  E-value=0.00067  Score=51.11  Aligned_cols=22  Identities=18%  Similarity=0.400  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q 038053           25 TVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      .|+|.|.+||||||+.+.|...
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~   23 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEY   23 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999753

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.83  E-value=0.00071  Score=49.88  Aligned_cols=21  Identities=29%  Similarity=0.445  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q 038053           25 TVVLLGRTGNGKSATGNSILG   45 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g   45 (231)
                      +|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999999865

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.78  E-value=0.00027  Score=58.77  Aligned_cols=23  Identities=26%  Similarity=0.475  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      ..+.|.|+||+|||||++.|++.
T Consensus        37 ~~~ll~Gp~G~GKTtl~~~la~~   59 (354)
T 1sxj_E           37 PHLLLYGPNGTGKKTRCMALLES   59 (354)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            44999999999999999999883

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.77  E-value=0.001  Score=53.80  Aligned_cols=25  Identities=28%  Similarity=0.444  Sum_probs=22.0

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHh
Q 038053           20 SNGKRTVVLLGRTGNGKSATGNSIL   44 (231)
Q Consensus        20 ~g~~~~i~lvG~~g~GKSTLin~l~   44 (231)
                      ++.+..|+|.|.+||||||+.+.|.
T Consensus        72 ~~~~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           72 PSGLYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             CTTCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHH
Confidence            3445799999999999999999997

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.75  E-value=0.00077  Score=52.00  Aligned_cols=21  Identities=29%  Similarity=0.504  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q 038053           25 TVVLLGRTGNGKSATGNSILG   45 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g   45 (231)
                      +|+|+|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999864

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.74  E-value=0.00086  Score=52.22  Aligned_cols=21  Identities=29%  Similarity=0.700  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhC
Q 038053           25 TVVLLGRTGNGKSATGNSILG   45 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g   45 (231)
                      .|+|+|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999864

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=96.73  E-value=0.00061  Score=57.99  Aligned_cols=30  Identities=17%  Similarity=0.203  Sum_probs=24.4

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHh--CCCc
Q 038053           17 TSSSNGKRTVVLLGRTGNGKSATGNSIL--GRKA   48 (231)
Q Consensus        17 ~i~~g~~~~i~lvG~~g~GKSTLin~l~--g~~~   48 (231)
                      -+++|  ..++|+|+||+|||||+..|+  +...
T Consensus       174 GI~~G--ei~~I~G~sGsGKTTLl~~la~~~~~p  205 (400)
T 3lda_A          174 GVETG--SITELFGEFRTGKSQLCHTLAVTCQIP  205 (400)
T ss_dssp             SEETT--SEEEEEESTTSSHHHHHHHHHHHTTSC
T ss_pred             CcCCC--cEEEEEcCCCCChHHHHHHHHHHhccC
Confidence            46678  899999999999999999553  4443

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.73  E-value=0.00097  Score=49.27  Aligned_cols=23  Identities=30%  Similarity=0.437  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      .+|+|.|.+||||||+.+.|...
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~~   30 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGLA   30 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            68999999999999999998653

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.69  E-value=0.0011  Score=53.88  Aligned_cols=23  Identities=26%  Similarity=0.553  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhC
Q 038053           23 KRTVVLLGRTGNGKSATGNSILG   45 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g   45 (231)
                      +..|.|+|+|||||||+.+.|..
T Consensus         2 ~~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            2 KKIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999999985

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=96.69  E-value=0.00037  Score=60.65  Aligned_cols=34  Identities=18%  Similarity=0.325  Sum_probs=26.8

Q ss_pred             cCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           10 IDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        10 ~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      .+.++.+.++.|    |.|+|+||+|||||+++|.+..
T Consensus        40 ~~~~~g~~~p~g----vLL~GppGtGKT~Laraia~~~   73 (476)
T 2ce7_A           40 KFNRIGARMPKG----ILLVGPPGTGKTLLARAVAGEA   73 (476)
T ss_dssp             HHHTTTCCCCSE----EEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHhhcCCCCCCe----EEEECCCCCCHHHHHHHHHHHc
Confidence            344555556655    8899999999999999999854

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.69  E-value=0.0014  Score=50.99  Aligned_cols=24  Identities=21%  Similarity=0.524  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      .+|.|+|+|||||+|....|+...
T Consensus        30 kiI~llGpPGsGKgTqa~~L~~~~   53 (217)
T 3umf_A           30 KVIFVLGGPGSGKGTQCEKLVQKF   53 (217)
T ss_dssp             EEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHH
Confidence            688899999999999999988543

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.67  E-value=0.0012  Score=52.43  Aligned_cols=25  Identities=24%  Similarity=0.223  Sum_probs=21.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCC
Q 038053           22 GKRTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        22 ~~~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      .+.+|+|.|++||||||+.+.|...
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~~   45 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQL   45 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHH
Confidence            3479999999999999999998653

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.66  E-value=0.00097  Score=51.63  Aligned_cols=22  Identities=27%  Similarity=0.518  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 038053           24 RTVVLLGRTGNGKSATGNSILG   45 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g   45 (231)
                      ..|+|+|++||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999964

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.65  E-value=0.00091  Score=54.57  Aligned_cols=28  Identities=21%  Similarity=0.392  Sum_probs=24.1

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           18 SSSNGKRTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        18 i~~g~~~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      +.++  ..|.|.|+||+|||||+++|.+..
T Consensus        46 ~~~~--~~vLL~Gp~GtGKT~la~ala~~~   73 (301)
T 3cf0_A           46 MTPS--KGVLFYGPPGCGKTLLAKAIANEC   73 (301)
T ss_dssp             CCCC--SEEEEECSSSSSHHHHHHHHHHHT
T ss_pred             CCCC--ceEEEECCCCcCHHHHHHHHHHHh
Confidence            4555  679999999999999999998764

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.65  E-value=0.0012  Score=51.65  Aligned_cols=23  Identities=30%  Similarity=0.475  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      ..|+|+|.+||||||+.+.|...
T Consensus        17 ~~I~l~G~~GsGKsT~a~~La~~   39 (233)
T 1ak2_A           17 VRAVLLGPPGAGKGTQAPKLAKN   39 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            68999999999999999999753

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.64  E-value=0.0012  Score=50.26  Aligned_cols=23  Identities=22%  Similarity=0.359  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      ..|+|.|++||||||+.+.|...
T Consensus         3 ~~i~i~G~~GsGKst~~~~la~~   25 (208)
T 3ake_A            3 GIVTIDGPSASGKSSVARRVAAA   25 (208)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            38999999999999999999763

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.62  E-value=0.0042  Score=51.49  Aligned_cols=25  Identities=32%  Similarity=0.493  Sum_probs=22.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      ..|+|+|++|||||||...|.....
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~~l~   65 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAAHFP   65 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHCC
Confidence            6899999999999999999998754

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.62  E-value=0.0012  Score=50.96  Aligned_cols=23  Identities=30%  Similarity=0.562  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCC
Q 038053           25 TVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      +|.|+|+|||||+|....|+...
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~   24 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEK   24 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999998653

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.62  E-value=0.0037  Score=53.71  Aligned_cols=24  Identities=25%  Similarity=0.487  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      .-|.|.||||+|||+|.++|++..
T Consensus       216 rGvLL~GPPGtGKTllAkAiA~e~  239 (437)
T 4b4t_L          216 KGVLLYGPPGTGKTLLAKAVAATI  239 (437)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHh
Confidence            459999999999999999998764

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.62  E-value=0.002  Score=54.77  Aligned_cols=24  Identities=25%  Similarity=0.472  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCc
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      -|.|.||||+|||+|.++|++...
T Consensus       184 GvLL~GPPGTGKTllAkAiA~e~~  207 (405)
T 4b4t_J          184 GVILYGPPGTGKTLLARAVAHHTD  207 (405)
T ss_dssp             CEEEESCSSSSHHHHHHHHHHHHT
T ss_pred             ceEEeCCCCCCHHHHHHHHHHhhC
Confidence            399999999999999999987643

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.60  E-value=0.0012  Score=50.27  Aligned_cols=23  Identities=22%  Similarity=0.406  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      ..|+|+|.+||||||+.+.|...
T Consensus        13 ~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           13 MVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            68999999999999999998754

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.58  E-value=0.0019  Score=55.21  Aligned_cols=27  Identities=30%  Similarity=0.263  Sum_probs=23.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           21 NGKRTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        21 g~~~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      ..+..|.|+|++||||||+.+.|....
T Consensus       256 ~~~~lIil~G~pGSGKSTla~~L~~~~  282 (416)
T 3zvl_A          256 PNPEVVVAVGFPGAGKSTFIQEHLVSA  282 (416)
T ss_dssp             SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence            345799999999999999999997643

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.50  E-value=0.0046  Score=52.99  Aligned_cols=24  Identities=29%  Similarity=0.498  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      .-|.|.||||+|||+|.++|++..
T Consensus       207 rGiLL~GPPGtGKT~lakAiA~~~  230 (428)
T 4b4t_K          207 RGVLLYGPPGTGKTMLVKAVANST  230 (428)
T ss_dssp             CEEEEESCTTTTHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHh
Confidence            449999999999999999998764

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.48  E-value=0.0017  Score=49.36  Aligned_cols=25  Identities=28%  Similarity=0.283  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      ..+.|.|++|+|||||+++|.....
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~   79 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELA   79 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHH
Confidence            5799999999999999999987653

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.47  E-value=0.00093  Score=55.29  Aligned_cols=41  Identities=20%  Similarity=0.153  Sum_probs=29.2

Q ss_pred             CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053            7 ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus         7 ~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      ...+++.+...+..+....+.|.|+||+|||||++.|.+..
T Consensus        42 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l   82 (353)
T 1sxj_D           42 QDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL   82 (353)
T ss_dssp             CCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            33444444445555533459999999999999999998763

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.45  E-value=0.004  Score=53.47  Aligned_cols=25  Identities=16%  Similarity=0.393  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      .-|.|.||||+|||+|.++|++...
T Consensus       216 rGvLLyGPPGTGKTllAkAiA~e~~  240 (434)
T 4b4t_M          216 KGALMYGPPGTGKTLLARACAAQTN  240 (434)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             CeeEEECcCCCCHHHHHHHHHHHhC
Confidence            4599999999999999999987643

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.37  E-value=0.0022  Score=49.76  Aligned_cols=24  Identities=17%  Similarity=0.306  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      ..+.|.|++|+|||||++.+....
T Consensus        53 ~~~ll~G~~G~GKT~la~~l~~~~   76 (242)
T 3bos_A           53 QAIYLWGPVKSGRTHLIHAACARA   76 (242)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            689999999999999999997654

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=96.37  E-value=0.0012  Score=61.22  Aligned_cols=31  Identities=26%  Similarity=0.230  Sum_probs=28.5

Q ss_pred             ccCCCcccCCCCCCceEEEEEcCCCCCHHHHHH
Q 038053            9 VIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGN   41 (231)
Q Consensus         9 ~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin   41 (231)
                      +=|+||++.||.+  ..+++.|.+|||||||..
T Consensus        24 hNLkni~v~iP~~--~l~viTGvSGSGKSSLaf   54 (842)
T 2vf7_A           24 HNLKDISVKVPRD--ALVVFTGVSGSGKSSLAF   54 (842)
T ss_dssp             TTCCSEEEEEESS--SEEEEESSTTSSHHHHHT
T ss_pred             cCCCCeeEEecCC--CEEEEECCCCCCHHHHHH
Confidence            3489999999999  999999999999999984

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=96.36  E-value=0.0011  Score=58.04  Aligned_cols=30  Identities=20%  Similarity=0.248  Sum_probs=25.8

Q ss_pred             cccCCCCCCceEEEEEcCCCCCHHHHHHHHhC
Q 038053           14 WKPTSSSNGKRTVVLLGRTGNGKSATGNSILG   45 (231)
Q Consensus        14 ~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g   45 (231)
                      +.+.+.++  ..++++|.|||||||++|+|..
T Consensus       160 v~ldL~~~--pHlLIaG~TGSGKSt~L~~li~  189 (512)
T 2ius_A          160 VVADLAKM--PHLLVAGTTGSGASVGVNAMIL  189 (512)
T ss_dssp             EEEEGGGS--CSEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEcccC--ceEEEECCCCCCHHHHHHHHHH
Confidence            55666677  7999999999999999999875

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=96.31  E-value=0.0021  Score=50.40  Aligned_cols=27  Identities=19%  Similarity=0.266  Sum_probs=20.5

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           19 SSNGKRTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        19 ~~g~~~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      ..|  ..|+|.|++||||||+++.|....
T Consensus        23 ~~g--~~I~~eG~~GsGKsT~~~~l~~~l   49 (227)
T 3v9p_A           23 ARG--KFITFEGIDGAGKTTHLQWFCDRL   49 (227)
T ss_dssp             CCC--CEEEEECCC---CHHHHHHHHHHH
T ss_pred             cCC--eEEEEECCCCCCHHHHHHHHHHHH
Confidence            456  899999999999999999987654

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.30  E-value=0.0019  Score=52.20  Aligned_cols=24  Identities=25%  Similarity=0.508  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      ..+.|.|+||+|||||+++|.+..
T Consensus        55 ~~vll~Gp~GtGKT~la~~la~~~   78 (297)
T 3b9p_A           55 KGLLLFGPPGNGKTLLARAVATEC   78 (297)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CeEEEECcCCCCHHHHHHHHHHHh
Confidence            579999999999999999998754

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.29  E-value=0.0027  Score=52.37  Aligned_cols=24  Identities=21%  Similarity=0.365  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      ..|+|+|++|||||||...|....
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l   29 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADAL   29 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc
Confidence            589999999999999999998653

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.24  E-value=0.0029  Score=52.50  Aligned_cols=24  Identities=21%  Similarity=0.338  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      ..|+|+|++|||||||...|....
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l   31 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKF   31 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHc
Confidence            589999999999999999988653

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=96.24  E-value=0.01  Score=54.78  Aligned_cols=25  Identities=24%  Similarity=0.535  Sum_probs=22.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      .-|.|.|+||+|||+|.++|++...
T Consensus       239 ~GILL~GPPGTGKT~LAraiA~elg  263 (806)
T 3cf2_A          239 RGILLYGPPGTGKTLIARAVANETG  263 (806)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHTTTT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhC
Confidence            4599999999999999999998753

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.23  E-value=0.003  Score=50.74  Aligned_cols=24  Identities=21%  Similarity=0.499  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      ..+.|.|+||+|||||+++|+...
T Consensus        52 ~~~ll~G~~GtGKT~la~~la~~~   75 (285)
T 3h4m_A           52 KGILLYGPPGTGKTLLAKAVATET   75 (285)
T ss_dssp             SEEEEESSSSSSHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHh
Confidence            579999999999999999998654

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.23  E-value=0.0082  Score=51.32  Aligned_cols=25  Identities=24%  Similarity=0.554  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      .-|.|.||||+|||+|.++|++...
T Consensus       217 rGvLLyGPPGTGKTlLAkAiA~e~~  241 (437)
T 4b4t_I          217 KGVILYGAPGTGKTLLAKAVANQTS  241 (437)
T ss_dssp             SEEEEESSTTTTHHHHHHHHHHHHT
T ss_pred             CCCceECCCCchHHHHHHHHHHHhC
Confidence            4499999999999999999987643

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=96.23  E-value=0.0041  Score=58.02  Aligned_cols=24  Identities=33%  Similarity=0.487  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      ..+.|+|+||+|||||++.|+...
T Consensus       192 ~~vlL~G~pG~GKT~la~~la~~l  215 (854)
T 1qvr_A          192 NNPVLIGEPGVGKTAIVEGLAQRI  215 (854)
T ss_dssp             CCCEEEECTTSCHHHHHHHHHHHH
T ss_pred             CceEEEcCCCCCHHHHHHHHHHHH
Confidence            468999999999999999998765

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=96.21  E-value=0.0025  Score=53.87  Aligned_cols=25  Identities=32%  Similarity=0.432  Sum_probs=22.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      ..++++|+||+|||||++.|+....
T Consensus        36 ~~~~i~G~~G~GKs~~~~~~~~~~~   60 (392)
T 4ag6_A           36 SNWTILAKPGAGKSFTAKMLLLREY   60 (392)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CceEEEcCCCCCHHHHHHHHHHHHH
Confidence            5899999999999999999987654

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=96.21  E-value=0.0022  Score=53.73  Aligned_cols=27  Identities=19%  Similarity=0.362  Sum_probs=23.4

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 038053           18 SSSNGKRTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        18 i~~g~~~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      +++|  ..+.|+|+||+|||||+..++..
T Consensus        58 i~~G--~i~~I~GppGsGKSTLal~la~~   84 (356)
T 3hr8_A           58 YPRG--RIVEIFGQESSGKTTLALHAIAE   84 (356)
T ss_dssp             EETT--EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ccCC--cEEEEECCCCCCHHHHHHHHHHH
Confidence            4567  89999999999999999888754

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.18  E-value=0.0024  Score=47.35  Aligned_cols=24  Identities=29%  Similarity=0.414  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      ..+.|.|++|+|||||++.+....
T Consensus        44 ~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           44 NNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             CEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHHH
Confidence            678999999999999999987764

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.18  E-value=0.0016  Score=52.89  Aligned_cols=23  Identities=17%  Similarity=0.291  Sum_probs=17.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      ..|+|.|++||||||+.+.|...
T Consensus         6 ~iIgItG~sGSGKSTva~~L~~~   28 (290)
T 1a7j_A            6 PIISVTGSSGAGTSTVKHTFDQI   28 (290)
T ss_dssp             CEEEEESCC---CCTHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            68999999999999999998753

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.17  E-value=0.0035  Score=51.36  Aligned_cols=24  Identities=25%  Similarity=0.393  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      ..|+|+|++|||||||...|....
T Consensus        11 ~~i~i~GptgsGKt~la~~La~~~   34 (316)
T 3foz_A           11 KAIFLMGPTASGKTALAIELRKIL   34 (316)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECCCccCHHHHHHHHHHhC
Confidence            689999999999999999998553

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=96.16  E-value=0.0038  Score=48.37  Aligned_cols=26  Identities=31%  Similarity=0.383  Sum_probs=22.6

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           20 SNGKRTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        20 ~g~~~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      .|  ..|+|.|++||||||+++.|....
T Consensus         5 ~g--~~i~~eG~~gsGKsT~~~~l~~~l   30 (213)
T 4edh_A            5 TG--LFVTLEGPEGAGKSTNRDYLAERL   30 (213)
T ss_dssp             CC--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             Cc--eEEEEEcCCCCCHHHHHHHHHHHH
Confidence            46  899999999999999999986543

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.15  E-value=0.0029  Score=48.73  Aligned_cols=23  Identities=30%  Similarity=0.379  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      ..+.|.|+||+||||+..+|+..
T Consensus        59 n~ili~GPPGtGKTt~a~ala~~   81 (212)
T 1tue_A           59 NCLVFCGPANTGKSYFGMSFIHF   81 (212)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999988777654

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.15  E-value=0.0036  Score=51.38  Aligned_cols=24  Identities=29%  Similarity=0.408  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      ..|+|+||+|||||||...|+...
T Consensus         4 ~~i~i~GptgsGKt~la~~La~~~   27 (322)
T 3exa_A            4 KLVAIVGPTAVGKTKTSVMLAKRL   27 (322)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             cEEEEECCCcCCHHHHHHHHHHhC
Confidence            689999999999999999998654

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.15  E-value=0.0039  Score=47.73  Aligned_cols=24  Identities=33%  Similarity=0.487  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      ..|+|+|++|+|||||...|...-
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            689999999999999999997653

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.15  E-value=0.008  Score=51.85  Aligned_cols=25  Identities=24%  Similarity=0.557  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      .-|.|.||||+|||+|.++|++...
T Consensus       244 rGILLyGPPGTGKTlLAkAiA~e~~  268 (467)
T 4b4t_H          244 KGILLYGPPGTGKTLCARAVANRTD  268 (467)
T ss_dssp             SEEEECSCTTSSHHHHHHHHHHHHT
T ss_pred             CceEeeCCCCCcHHHHHHHHHhccC
Confidence            4599999999999999999987643

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.12  E-value=0.0036  Score=49.16  Aligned_cols=24  Identities=21%  Similarity=0.194  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      ..|+|.|..||||||+.+.|....
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~~l   26 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTKTY   26 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHc
Confidence            789999999999999999998653

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=96.11  E-value=0.0018  Score=60.59  Aligned_cols=34  Identities=29%  Similarity=0.339  Sum_probs=29.6

Q ss_pred             cccCCCcccCCCCCCceEEEEEcCCCCCHHHHH-HHH
Q 038053            8 RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATG-NSI   43 (231)
Q Consensus         8 ~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLi-n~l   43 (231)
                      .+=|+||++.||.+  ..++|.|.+|||||||. .+|
T Consensus        11 ~hNLkni~~~ip~~--~l~v~tG~SGSGKSsLafdtl   45 (916)
T 3pih_A           11 VHNLKNITVRIPKN--RLVVITGVSGSGKSSLAMDTI   45 (916)
T ss_dssp             STTCCSBCCEEETT--SEEEEEESTTSSSHHHHTTTH
T ss_pred             ccccCcceeccCCC--cEEEEECCCCCcHHHHHHHHH
Confidence            34489999999999  99999999999999997 443

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=96.11  E-value=0.0019  Score=60.51  Aligned_cols=30  Identities=27%  Similarity=0.274  Sum_probs=27.9

Q ss_pred             ccCCCcccCCCCCCceEEEEEcCCCCCHHHHH
Q 038053            9 VIDGDWKPTSSSNGKRTVVLLGRTGNGKSATG   40 (231)
Q Consensus         9 ~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLi   40 (231)
                      +=|+||++.||.+  ..|+|.|.+|||||||.
T Consensus        32 hNLkni~v~iP~~--~lvv~tG~SGSGKSSLa   61 (972)
T 2r6f_A           32 HNLKNIDVEIPRG--KLVVLTGLSGSGKSSLA   61 (972)
T ss_dssp             SSCCSEEEEEETT--SEEEEEESTTSSHHHHH
T ss_pred             ccCCceeeeccCC--cEEEEECCCCCCHHHHH
Confidence            3489999999999  99999999999999996

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=96.10  E-value=0.0031  Score=48.55  Aligned_cols=23  Identities=22%  Similarity=0.343  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      ..|+|+|++||||||+.+.|...
T Consensus         4 ~~i~i~G~~gsGkst~~~~l~~~   26 (219)
T 2h92_A            4 INIALDGPAAAGKSTIAKRVASE   26 (219)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            68999999999999999998753

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=96.07  E-value=0.0037  Score=49.27  Aligned_cols=24  Identities=25%  Similarity=0.387  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      ..|+|.|++||||||+++.|....
T Consensus        28 ~~i~~eG~~GsGKsT~~~~l~~~l   51 (236)
T 3lv8_A           28 KFIVIEGLEGAGKSTAIQVVVETL   51 (236)
T ss_dssp             CEEEEEESTTSCHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHH
Confidence            899999999999999999987654

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.06  E-value=0.0038  Score=48.92  Aligned_cols=23  Identities=35%  Similarity=0.573  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      .++||+|+|||||||+...|...
T Consensus         9 ~~~~~~G~pGsGKsT~a~~L~~~   31 (230)
T 3gmt_A            9 MRLILLGAPGAGKGTQANFIKEK   31 (230)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cceeeECCCCCCHHHHHHHHHHH
Confidence            68999999999999999998653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	231
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	6e-10
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	2e-06
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	9e-06
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	2e-05
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	2e-04
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	5e-04

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 55.2 bits (132), Expect = 6e-10
 Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 3/102 (2%)

Query: 25  TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 84
           T++++G+ G GKS+T NSI+G +    S           +  +  + G  +N+IDTPGL 
Sbjct: 34  TILVMGKGGVGKSSTVNSIIGERVVSIS-PFQSEGPRP-VMVSRSRAGFTLNIIDTPGLI 91

Query: 85  DSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEE 126
           +    ++     I+K   L K     + V      R    ++
Sbjct: 92  EGGYINDMA-LNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDK 132

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 44.5 bits (104), Expect = 2e-06
 Identities = 29/174 (16%), Positives = 60/174 (34%), Gaps = 4/174 (2%)

Query: 25  TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 84
            V L+G    GKS   + +   K     AD    T    +      DG+   + D PGL 
Sbjct: 3   DVGLVGFPSVGKSTLLSVVSSAKP--KIADYHFTTLVPNLGMVETDDGRSFVMADLPGLI 60

Query: 85  DSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEAANGGQPYTDEFLAELKR 144
           + +     +G + ++ I   +  +H + +          +    N      +  L E  +
Sbjct: 61  EGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQ 120

Query: 145 GATELRDQQAEVDSLKEYSKQEISKLMGQMQES--YEDQIKRITEMVESELKET 196
                +    E     E  K++++        S    + ++ +   V ++L+ T
Sbjct: 121 IIVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLENT 174

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.6 bits (102), Expect = 9e-06
 Identities = 19/103 (18%), Positives = 39/103 (37%), Gaps = 9/103 (8%)

Query: 26  VVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTC-EMKTTVLKDGQVVNVIDTPGLF 84
           V + G TG+GKS+  N++ G    +  A  +GV +   E       +   V   D PG+ 
Sbjct: 59  VAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIG 118

Query: 85  DSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA 127
            ++   +   +++                +    +RF + +  
Sbjct: 119 STNFPPDTYLEKMKFY--------EYDFFIIISATRFKKNDID 153

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 41.6 bits (96), Expect = 2e-05
 Identities = 14/84 (16%), Positives = 35/84 (41%), Gaps = 2/84 (2%)

Query: 26  VVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 85
           V L+G    GKS+   ++         A     T +  +    + + +   + D PG+ +
Sbjct: 4   VGLVGYPNAGKSSLLAAMTRAHP--KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIE 61

Query: 86  SSAGSEFVGKEIVKRIGLAKGGIH 109
            ++  + +G E ++ I   +  ++
Sbjct: 62  GASEGKGLGLEFLRHIARTRVLLY 85

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 38.0 bits (87), Expect = 2e-04
 Identities = 30/162 (18%), Positives = 59/162 (36%), Gaps = 5/162 (3%)

Query: 26  VVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 85
           +V++G+   GKS   N +L       +            +  ++  G +  ++DT G+  
Sbjct: 3   MVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEE--IVIRGILFRIVDTAGVRS 60

Query: 86  SSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEAANGGQPYTDEFLAELKRG 145
            +  ++ V +  ++R          VL V    S   +E+             +   K  
Sbjct: 61  ET--NDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVD 118

Query: 146 ATELRDQQAEVDSLKEYSKQ-EISKLMGQMQESYEDQIKRIT 186
             E  +++   + L       +IS L G+  E  E+ I R T
Sbjct: 119 VVEKINEEEIKNKLGTDRHMVKISALKGEGLEKLEESIYRET 160

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 37.4 bits (85), Expect = 5e-04
 Identities = 32/182 (17%), Positives = 60/182 (32%), Gaps = 4/182 (2%)

Query: 25  TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 84
           T++  GR+  GKS     + G+K         GVT+              +         
Sbjct: 2   TIIFAGRSNVGKSTLIYRLTGKKV--RRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGL 59

Query: 85  DSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEAANGGQPYTDEFLAELKR 144
                     + +      AK    AVLVV    +    +     G  P   EF   L+ 
Sbjct: 60  PKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE 119

Query: 145 GATELRDQQAEVDSLKEYSKQEISKLMGQMQESYEDQIKRITEMVESELKETTTRLEQQL 204
                     ++D +K    QE+   + +  E    +I ++   + ++  +   RL+ ++
Sbjct: 120 LDIPTIVAVNKLDKIKNV--QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRI 177

Query: 205 AE 206
            E
Sbjct: 178 FE 179

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	231
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.76
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.73
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.69
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.69
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.68
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.68
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.66
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.66
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.61
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.61
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.57
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.53
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.51
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.51
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.51
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.5
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.47
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.46
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.45
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.44
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.43
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.42
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.41
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.41
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.41
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.4
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.39
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.35
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.35
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.35
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.35
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.34
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.34
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.34
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.33
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.33
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.32
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.32
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.32
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.32
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.31
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.31
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.31
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.3
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.27
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.26
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.25
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.24
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.23
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.23
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.23
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.23
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.23
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.23
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.22
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.22
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.21
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.21
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.2
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.2
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.19
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.18
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.17
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.17
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.17
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.16
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.16
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.15
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	99.15
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.15
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.15
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.15
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.14
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.14
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.12
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.12
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.12
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.11
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.1
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.1
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.09
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.09
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.09
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.08
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.07
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.07
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.07
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.04
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.04
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.03
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.01
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.99
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	98.98
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	98.97
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	98.96
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	98.95
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	98.92
d2fh5b1	207	Signal recognition particle receptor beta-subunit	98.9
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	98.89
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	98.86
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.82
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	98.76
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	98.73
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	98.62
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	98.61
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.55
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	98.53
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	98.48
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	98.47
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	98.45
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.33
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.31
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	98.28
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	98.23
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.08
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.03
d1okkd2	207	GTPase domain of the signal recognition particle r	98.01
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.99
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	97.98
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	97.91
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.87
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.82
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.81
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.78
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.77
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.71
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.71
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.65
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.65
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.64
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.62
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.61
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.58
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.58
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.58
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	97.56
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.55
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.55
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.55
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.53
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.52
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.51
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.48
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.44
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.44
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.42
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.41
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.4
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.4
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.38
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.38
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.35
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	97.34
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.31
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.3
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.29
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.29
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.24
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	97.24
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.23
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.22
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.22
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.21
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.2
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.2
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.16
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.14
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.14
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.12
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	97.09
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	97.08
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	97.06
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.92
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.9
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	96.87
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.86
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.77
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.73
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.72
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.63
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.63
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.63
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.61
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.6
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.55
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.53
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.53
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.53
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.52
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.51
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.34
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.32
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.31
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.28
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.22
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.15
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.14
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.13
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	96.13
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	96.12
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.1
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.1
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.09
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	96.03
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.93
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	95.91
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.9
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.9
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	95.87
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.73
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	95.65
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	95.64
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	95.61
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	95.4
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.3
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.26
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	95.25
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.2
d1xpua3	289	Transcription termination factor Rho, ATPase domai	95.17
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.16
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	95.16
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.13
d1tuea_	205	Replication protein E1 helicase domain {Human papi	95.12
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	95.02
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	95.01
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	94.99
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	94.85
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	94.73
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	94.4
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	94.26
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	94.25
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	94.15
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	94.11
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	94.01
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	93.85
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	93.82
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	93.74
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	92.86
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	92.85
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	92.69
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	92.58
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	92.37
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	92.34
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	92.25
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	92.23
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	91.79
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	91.6
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	90.97
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	90.53
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	90.25
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	90.15
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	89.66
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	89.06
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	87.19
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	87.06
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	86.47
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	86.27
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	85.81
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	85.02
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	84.76
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	84.28
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	82.13
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	80.9
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	80.58
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	80.27

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.76  E-value=1.1e-17  Score=125.95  Aligned_cols=147  Identities=20%  Similarity=0.250  Sum_probs=101.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhh
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLA  104 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~  104 (231)
                      .|+|+|.+|||||||+|+|+|......+ ..+++|.......... .+..+.++||||+....   ......+...+...
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~~~~~~~-~~~~tt~~~~~~~~~~-~~~~~~~~DtpG~~~~~---~~~~~~~~~~~~~~   81 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGVKVAPIS-PRPQTTRKRLRGILTE-GRRQIVFVDTPGLHKPM---DALGEFMDQEVYEA   81 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSCCSCCC-SSSCCCCSCEEEEEEE-TTEEEEEEECCCCCCCC---SHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeec-ccCCcccccccceeee-eeeeeeecccccccccc---cccchhcccccccc
Confidence            7999999999999999999998754442 4556666555544444 77889999999997643   22333444555566


Q ss_pred             cCCccEEEEEEECCCCCCHHHHH-------hcCCCCcHHHHHHHHHhhH------HHHHhhcc--chhhhhhhhHhhHHH
Q 038053          105 KGGIHAVLVVFSVRSRFSQEEEA-------ANGGQPYTDEFLAELKRGA------TELRDQQA--EVDSLKEYSKQEISK  169 (231)
Q Consensus       105 ~~~~~~il~vvd~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~------~~l~~~~~--~i~~is~~~~~~i~~  169 (231)
                      +..+|++++|+|++++++..+..       .....|.+ .++|++|...      ..+...++  .++++||++|.|+++
T Consensus        82 ~~~ad~il~v~D~~~~~~~~~~~i~~~l~~~~~~~pii-lv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~~~gi~~  160 (178)
T d1wf3a1          82 LADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPIL-LVGNKLDAAKYPEEAMKAYHELLPEAEPRMLSALDERQVAE  160 (178)
T ss_dssp             TSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEE-EEEECGGGCSSHHHHHHHHHHTSTTSEEEECCTTCHHHHHH
T ss_pred             cccccceeeeechhhhhcccccchhhheeccccchhhh-hhhcccccccCHHHHHHHHHhhcccCceEEEecCCCCCHHH
Confidence            78899999999999888876644       12233443 3445544211      23333333  566789999999999


Q ss_pred             HHHHHHHH
Q 038053          170 LMGQMQES  177 (231)
Q Consensus       170 l~~~i~~~  177 (231)
                      |++.+.+.
T Consensus       161 L~~~i~~~  168 (178)
T d1wf3a1         161 LKADLLAL  168 (178)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHHh
Confidence            98887653

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=1.4e-17  Score=123.19  Aligned_cols=148  Identities=21%  Similarity=0.249  Sum_probs=98.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+|+|++|||||||+|+|+|...... ...++++.......... .+..+.++|+||+.+..   .............
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~d~~g~~~~~---~~~~~~~~~~~~~   76 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIV-TDIAGTTRDVLREHIHI-DGMPLHIIDTAGLREAS---DEVERIGIERAWQ   76 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCC-CSSTTCCCSCEEEEEEE-TTEEEEEEECCCCSCCS---SHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEe-ecccccccceEeeeeec-cCceeeecccccccccc---ccchhHHHHHHHH
Confidence            7999999999999999999999886544 24556665555444555 78889999999998743   2222333333444


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH--------hcCCCCcHHHHHHHHHhhH--HHHHhhc-cchhhhhhhhHhhHHHHHH
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA--------ANGGQPYTDEFLAELKRGA--TELRDQQ-AEVDSLKEYSKQEISKLMG  172 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~--~~l~~~~-~~i~~is~~~~~~i~~l~~  172 (231)
                      ....+|++++++|........+..        .....|++ .+.+++|...  ..+.+.. .+++++||++|.|+++|++
T Consensus        77 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ii-lv~NK~Dl~~~~~~~~~~~~~~~~~iSAk~~~gi~~L~~  155 (161)
T d2gj8a1          77 EIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPIT-VVRNKADITGETLGMSEVNGHALIRLSARTGEGVDVLRN  155 (161)
T ss_dssp             HHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEE-EEEECHHHHCCCCEEEEETTEEEEECCTTTCTTHHHHHH
T ss_pred             HHHhccccceeeccccccchhhhhhhhhhhhhccccccee-eccchhhhhhhHHHHHHhCCCcEEEEECCCCCCHHHHHH
Confidence            557889999999997544332222        22345554 4566665111  0111111 1788899999999999998


Q ss_pred             HHHHH
Q 038053          173 QMQES  177 (231)
Q Consensus       173 ~i~~~  177 (231)
                      .+.+.
T Consensus       156 ~l~~~  160 (161)
T d2gj8a1         156 HLKQS  160 (161)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            87663

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.69  E-value=6.4e-17  Score=122.40  Aligned_cols=160  Identities=18%  Similarity=0.191  Sum_probs=94.7

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHH-HH
Q 038053           17 TSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFV-GK   95 (231)
Q Consensus        17 ~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~-~~   95 (231)
                      .+..+  .+|+|+|.+|+|||||+|+|+|......+ ..+++|.......... .+..+.++|+||+.......... ..
T Consensus         4 ~~~~~--~kV~iiG~~~~GKSTLin~l~~~~~~~~~-~~~~t~~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~~~~~   79 (186)
T d1mkya2           4 EITDA--IKVAIVGRPNVGKSTLFNAILNKERALVS-PIPGTTRDPVDDEVFI-DGRKYVFVDTAGLRRKSRVEPRTVEK   79 (186)
T ss_dssp             CCCSC--EEEEEECSTTSSHHHHHHHHHTSTTEEEC-CCC------CCEEEEE-TTEEEEESSCSCC-----------CC
T ss_pred             CCCCC--CEEEEECCCCCCHHHHHHHHHCCCcceee-cccccccccceeeecc-CCceeeeeccCCcccccccccccccc
Confidence            34455  89999999999999999999998765442 3455555554444544 78889999999986422111100 00


Q ss_pred             HHHHHHhhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHh------hH----HHHHhhcc-----c
Q 038053           96 EIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKR------GA----TELRDQQA-----E  155 (231)
Q Consensus        96 ~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~------~~----~~l~~~~~-----~  155 (231)
                      .....+......+|++++++|+..++......     .....+.+ .++++++.      ..    ..+.....     +
T Consensus        80 ~~~~~~~~~~~~~dvii~v~d~~~~~~~~~~~~~~~~~~~~~~~i-~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (186)
T d1mkya2          80 YSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASV-VVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSP  158 (186)
T ss_dssp             SCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEE-EEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSC
T ss_pred             chhHHHHHHHhcCCEEEEeecccccchhhHHHHHHHHHHcCCcee-eeccchhhhcchhhhhhhHHHHHHHHhcccCCCe
Confidence            01111222335679999999998788877654     12222332 11222220      00    12222221     6


Q ss_pred             hhhhhhhhHhhHHHHHHHHHHHHHHH
Q 038053          156 VDSLKEYSKQEISKLMGQMQESYEDQ  181 (231)
Q Consensus       156 i~~is~~~~~~i~~l~~~i~~~~~~~  181 (231)
                      ++++||++|.|+++|++.+.+.|+.|
T Consensus       159 i~~vSa~~g~gv~~L~~~i~~~~~~~  184 (186)
T d1mkya2         159 LIFTSADKGWNIDRMIDAMNLAYASY  184 (186)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence            77899999999999999999988765

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.69  E-value=3.2e-17  Score=123.72  Aligned_cols=148  Identities=18%  Similarity=0.184  Sum_probs=92.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCch----HHHHHHHHH
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSE----FVGKEIVKR  100 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~----~~~~~~~~~  100 (231)
                      .|+|+|+||||||||+|+|+|.....  ...+++|+....  .   ....+.++||||+........    .+...+..+
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~--~~~~g~T~~~~~--~---~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~   74 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRR--GKRPGVTRKIIE--I---EWKNHKIIDMPGFGFMMGLPKEVQERIKDEIVHF   74 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSS--SSSTTCTTSCEE--E---EETTEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcee--eCCCCEeecccc--c---ccccceecccCCceeccccccccccccchhhhhh
Confidence            59999999999999999999987542  246677765432  2   222356899999865544333    233344555


Q ss_pred             HhhhcCCccEEEEEEECCC-----------CCCHHHHH-----hcCCCCcHHHHHHHHHhhH------HHHHhhc----c
Q 038053          101 IGLAKGGIHAVLVVFSVRS-----------RFSQEEEA-----ANGGQPYTDEFLAELKRGA------TELRDQQ----A  154 (231)
Q Consensus       101 ~~~~~~~~~~il~vvd~~~-----------~~~~~~~~-----~~~~~~~~~~~~~~~~~~~------~~l~~~~----~  154 (231)
                      +......+|++++++|...           .+...+..     .....|++ .++|++|.-.      ..+...+    .
T Consensus        75 ~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~p~i-iv~NK~D~~~~~~~~~~~~~~~~~~~~~  153 (184)
T d2cxxa1          75 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTI-VAVNKLDKIKNVQEVINFLAEKFEVPLS  153 (184)
T ss_dssp             HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEE-EEEECGGGCSCHHHHHHHHHHHHTCCGG
T ss_pred             hhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHcCCCEE-EEEeeeehhhhHHHHHHHHHHHhccccc
Confidence            5566678899999999862           22222221     22344544 3445544210      1111111    1


Q ss_pred             ----chhhhhhhhHhhHHHHHHHHHHHHHH
Q 038053          155 ----EVDSLKEYSKQEISKLMGQMQESYED  180 (231)
Q Consensus       155 ----~i~~is~~~~~~i~~l~~~i~~~~~~  180 (231)
                          .++++||++|.|+++|++.+.+.+.+
T Consensus       154 ~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         154 EIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             GHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence                45668999999999999998876543

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.68  E-value=1.1e-18  Score=129.17  Aligned_cols=146  Identities=16%  Similarity=0.271  Sum_probs=90.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCC--chHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAG--SEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~--~~~~~~~~~~~~  101 (231)
                      .+|+|+|.+|||||||+|+|+|....... ..++.|.......... .+..+.++||||+......  .......++   
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~---   75 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVT-DIPGTTRDVISEEIVI-RGILFRIVDTAGVRSETNDLVERLGIERTL---   75 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCC-CSSCCSSCSCCEEEEE-TTEEEEEEESSCCCSSCCTTCCCCCHHHHH---
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeee-ccccccccceeEEEEe-CCeeEEeccccccccCCccHHHHHHHHHHH---
Confidence            37999999999999999999998754442 4455555444444444 7788889999997643221  111112222   


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH---hcCCCCcHHHHHHHHHh----hHHHHHhhc---cchhhhhhhhHhhHHHHH
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA---ANGGQPYTDEFLAELKR----GATELRDQQ---AEVDSLKEYSKQEISKLM  171 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~----~~~~l~~~~---~~i~~is~~~~~~i~~l~  171 (231)
                       ..+..+|++++|+|+++++...+..   .....++. .++++.+.    ...++...+   .+++++||++|.|+++|+
T Consensus        76 -~~~~~ad~ii~v~d~~~~~~~~~~~~~~~~~~~~~i-~~~~k~d~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~  153 (160)
T d1xzpa2          76 -QEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYL-VVINKVDVVEKINEEEIKNKLGTDRHMVKISALKGEGLEKLE  153 (160)
T ss_dssp             -HHHHHCSEEEEEEETTSCCCHHHHHHHHHHTTSSEE-EEEEECSSCCCCCHHHHHHHHTCSTTEEEEEGGGTCCHHHHH
T ss_pred             -HHHHhCCEEEEEEeCCCCcchhhhhhhhhcccccce-eeeeeccccchhhhHHHHHHhCCCCcEEEEECCCCCCHHHHH
Confidence             2335679999999999877777655   11111111 11111110    002333322   278889999999999999


Q ss_pred             HHHHH
Q 038053          172 GQMQE  176 (231)
Q Consensus       172 ~~i~~  176 (231)
                      +.+.+
T Consensus       154 ~~I~k  158 (160)
T d1xzpa2         154 ESIYR  158 (160)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            88754

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.68  E-value=7.2e-18  Score=127.74  Aligned_cols=147  Identities=15%  Similarity=0.192  Sum_probs=91.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhh
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLA  104 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~  104 (231)
                      .|||+|++|||||||+|+|+|......  +..++|+...........+..+.++||||+.........+...+...+   
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~--~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~---   77 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIA--DYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHI---   77 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEES--STTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHH---
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCcee--cCCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHH---
Confidence            599999999999999999999876443  455666665555555545678889999998643333333333444333   


Q ss_pred             cCCccEEEEEEECC--CCCCHHHHH------------hcCCCCcHHHHHHHHHhh-----HHHHHhhcc---chhhhhhh
Q 038053          105 KGGIHAVLVVFSVR--SRFSQEEEA------------ANGGQPYTDEFLAELKRG-----ATELRDQQA---EVDSLKEY  162 (231)
Q Consensus       105 ~~~~~~il~vvd~~--~~~~~~~~~------------~~~~~~~~~~~~~~~~~~-----~~~l~~~~~---~i~~is~~  162 (231)
                       ..++.++++++..  +.....+..            .....|.+ .++|+.+..     .+.+.+.+.   +++++||+
T Consensus        78 -~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~i-vv~NK~Dl~~~~~~~~~~~~~~~~~~~v~~iSA~  155 (185)
T d1lnza2          78 -ERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQI-IVANKMDMPEAAENLEAFKEKLTDDYPVFPISAV  155 (185)
T ss_dssp             -HHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBC-BEEECTTSTTHHHHHHHHHHHCCSCCCBCCCSSC
T ss_pred             -HHhhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcch-hhccccchHhHHHHHHHHHHHhccCCcEEEEECC
Confidence             3457788788765  222322221            11123333 333443311     123444332   78889999


Q ss_pred             hHhhHHHHHHHHHHHH
Q 038053          163 SKQEISKLMGQMQESY  178 (231)
Q Consensus       163 ~~~~i~~l~~~i~~~~  178 (231)
                      +|.|+++|+..+.+..
T Consensus       156 ~g~Gi~~L~~~i~~~L  171 (185)
T d1lnza2         156 TREGLRELLFEVANQL  171 (185)
T ss_dssp             CSSTTHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhh
Confidence            9999999998887654

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.66  E-value=3.6e-16  Score=116.74  Aligned_cols=150  Identities=19%  Similarity=0.230  Sum_probs=89.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhh
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLA  104 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~  104 (231)
                      .|+|+|++|||||||+|.|+|......+ ..+++|.......... ....+.+.|+||++.......  ...........
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~--~~~~~~~~~~~   77 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVE-DEEGVTRDPVQDTVEW-YGKTFKLVDTCGVFDNPQDII--SQKMKEVTLNM   77 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEE-TTEEEEEEECTTTTSSGGGCC--CHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceec-ccCceeeccccccccc-cccccccccccceeeeecccc--ccccccccccc
Confidence            6999999999999999999998764432 4556665554444444 677888999999876432211  11222233344


Q ss_pred             cCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHh------hH-HHHHh-hccchhhhhhhhHhhHHHHH
Q 038053          105 KGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKR------GA-TELRD-QQAEVDSLKEYSKQEISKLM  171 (231)
Q Consensus       105 ~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~------~~-~~l~~-~~~~i~~is~~~~~~i~~l~  171 (231)
                      ...+|+++++++.+..+...+..     .....|++ .++|++|.      +. .++.. ...+++++||++|.|+++|+
T Consensus        78 ~~~ad~i~~~~~~~~~~~~~~~~~~~~l~~~~~pvi-iv~NK~Dl~~~~~~~~~~~~~~~~~~~~i~iSAk~g~gid~L~  156 (171)
T d1mkya1          78 IREADLVLFVVDGKRGITKEDESLADFLRKSTVDTI-LVANKAENLREFEREVKPELYSLGFGEPIPVSAEHNINLDTML  156 (171)
T ss_dssp             HTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEE-EEEESCCSHHHHHHHTHHHHGGGSSCSCEECBTTTTBSHHHHH
T ss_pred             cccCcEEEEeeccccccccccccccccccccccccc-ccchhhhhhhhhhhHHHHHHHhcCCCCeEEEecCCCCCHHHHH
Confidence            57889999999998788876654     22344444 22333331      10 12211 22367789999999999998


Q ss_pred             HHHHHHHH
Q 038053          172 GQMQESYE  179 (231)
Q Consensus       172 ~~i~~~~~  179 (231)
                      +.+.+.+.
T Consensus       157 ~~i~~~l~  164 (171)
T d1mkya1         157 ETIIKKLE  164 (171)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHhCC
Confidence            88776543

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.66  E-value=3e-16  Score=118.17  Aligned_cols=147  Identities=15%  Similarity=0.132  Sum_probs=89.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhh
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLA  104 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~  104 (231)
                      .|||+|++|||||||+|+|+|......  +..+.|+...........+..+.++||||+.............+.    ..
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l----~~   76 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIA--PYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFL----RH   76 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEEC--CCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHH----HH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCcee--ccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHH----HH
Confidence            499999999999999999999876543  344455555554444435677889999998764332222222222    23


Q ss_pred             cCCccEEEEEEECCCCCCHHHHH----------hcCCCCcHHHHHHHHHhh----H----HHHHhhccchhhhhhhhHhh
Q 038053          105 KGGIHAVLVVFSVRSRFSQEEEA----------ANGGQPYTDEFLAELKRG----A----TELRDQQAEVDSLKEYSKQE  166 (231)
Q Consensus       105 ~~~~~~il~vvd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~----~----~~l~~~~~~i~~is~~~~~~  166 (231)
                      ...++++++++|...........          .....|++ .+++++|..    .    +.+...-.+++.+||++|.|
T Consensus        77 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-iv~NK~D~~~~~~~~~~~~~~~~~~~~~~~iSA~tg~g  155 (180)
T d1udxa2          77 IARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSL-VALNKVDLLEEEAVKALADALAREGLAVLPVSALTGAG  155 (180)
T ss_dssp             HTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEE-EEEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCTT
T ss_pred             HHhhhhhhhhcccccccccchhhhhhhhhccccccchhhhh-hhhhhhhhhhHHHHHHHHHHHHhcCCeEEEEEcCCCCC
Confidence            46778999999986322111111          01112332 222333310    0    12222223788899999999


Q ss_pred             HHHHHHHHHHHH
Q 038053          167 ISKLMGQMQESY  178 (231)
Q Consensus       167 i~~l~~~i~~~~  178 (231)
                      +++|++.+.+..
T Consensus       156 id~L~~~i~~~l  167 (180)
T d1udxa2         156 LPALKEALHALV  167 (180)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999887754

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.61  E-value=2.7e-15  Score=114.30  Aligned_cols=150  Identities=17%  Similarity=0.214  Sum_probs=89.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHH--HHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFV--GKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~--~~~~~~~~  101 (231)
                      .+|+|+|+||||||||+|+|+|..........++.|.......    ......++|++++..........  ...+....
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~   99 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI----INDELHFVDVPGYGFAKVSKSEREAWGRMIETY   99 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEE----ETTTEEEEECCCBCCCSSCHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeeccccc----ccccceEEEEEeeccccccccccchhhhHHhhh
Confidence            5899999999999999999999753211123334443322221    23445678888876544333222  22334444


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhh----H----HHHHhhcc-----chhhhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRG----A----TELRDQQA-----EVDSLKEYS  163 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~----~----~~l~~~~~-----~i~~is~~~  163 (231)
                      ......++.+++++|+..+++..+..     .....|++ .++|++|..    .    ..+.+.+.     +++++||.+
T Consensus       100 ~~~~~~~~~vi~viD~~~~~~~~~~~~~~~l~~~~~pii-vv~NK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~~  178 (195)
T d1svia_         100 ITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVI-VIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSET  178 (195)
T ss_dssp             HHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEE-EEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTT
T ss_pred             hccccchhhhhhhhhccccccccccccccccccccCcce-echhhccccCHHHHHHHHHHHHHHhcccCCCCEEEEeCCC
Confidence            45567889999999998788877655     23344543 344444420    0    22333221     678899999


Q ss_pred             HhhHHHHHHHHHHHH
Q 038053          164 KQEISKLMGQMQESY  178 (231)
Q Consensus       164 ~~~i~~l~~~i~~~~  178 (231)
                      |.|++++++.+.+..
T Consensus       179 ~~gi~el~~~i~~~l  193 (195)
T d1svia_         179 KKGKDEAWGAIKKMI  193 (195)
T ss_dssp             CTTHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999887653

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.61  E-value=8.7e-15  Score=110.09  Aligned_cols=142  Identities=11%  Similarity=0.197  Sum_probs=87.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccC-----CCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASAD-----SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIV   98 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~-----~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~   98 (231)
                      .+|+++|++|||||||+|+|++.........     ..+.|.......... .+..+.++|+||..           .+.
T Consensus         6 inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~d~~g~~-----------~~~   73 (179)
T d1wb1a4           6 INLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL-ENYRITLVDAPGHA-----------DLI   73 (179)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE-TTEEEEECCCSSHH-----------HHH
T ss_pred             EEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeecccccccccc-CCcccccccccccc-----------ccc
Confidence            5799999999999999999998653221110     112222222222333 67778889998844           234


Q ss_pred             HHHhhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHhhH-----------HHHHhh---c--cchh
Q 038053           99 KRIGLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKRGA-----------TELRDQ---Q--AEVD  157 (231)
Q Consensus        99 ~~~~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-----------~~l~~~---~--~~i~  157 (231)
                      ......+..+|.+++++|+.+++...++.     ...+.|.+ .++|++|...           ..+...   .  .+++
T Consensus        74 ~~~~~~l~~~d~~ilv~d~~~g~~~~~~~~~~~~~~~~~p~i-iv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv  152 (179)
T d1wb1a4          74 RAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPII-VVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSII  152 (179)
T ss_dssp             HHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBC-EEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEE
T ss_pred             cchhhhhhhccccccccccccccchhhhhhhhhhhhcCCcce-eccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEE
Confidence            44445667889999999999888776654     23345544 3344444211           111111   1  1678


Q ss_pred             hhhhhhHhhHHHHHHHHHHHH
Q 038053          158 SLKEYSKQEISKLMGQMQESY  178 (231)
Q Consensus       158 ~is~~~~~~i~~l~~~i~~~~  178 (231)
                      ++||++|.|+++|++.+.+..
T Consensus       153 ~iSA~~g~gi~eL~~~I~~~l  173 (179)
T d1wb1a4         153 PISAKTGFGVDELKNLIITTL  173 (179)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEccCCcCHHHHHHHHHhcC
Confidence            899999999999999887654

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.57  E-value=4e-15  Score=118.34  Aligned_cols=100  Identities=26%  Similarity=0.341  Sum_probs=75.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+|+|++|+|||||+|+|+|...+.++ ..+++|+.+....... .+..+.++||||+++.....+.....+..+.  
T Consensus        33 l~I~LvG~tg~GKSSliN~ilg~~~~~vs-~~~~~T~~~~~~~~~~-~g~~i~viDTPGl~~~~~~~~~~~~~i~~~~--  108 (257)
T d1h65a_          33 LTILVMGKGGVGKSSTVNSIIGERVVSIS-PFQSEGPRPVMVSRSR-AGFTLNIIDTPGLIEGGYINDMALNIIKSFL--  108 (257)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCC-SSSCCCSSCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHHT--
T ss_pred             cEEEEECCCCCcHHHHHHHHhCCCceeec-CCCCcceeEEEEEEEe-ccEEEEEEeeecccCCcchHHHHHHHHHHHH--
Confidence            89999999999999999999999987764 4567777776666666 8889999999999876544444433333322  


Q ss_pred             hcCCccEEEEEEECCC-CCCHHHHH
Q 038053          104 AKGGIHAVLVVFSVRS-RFSQEEEA  127 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~-~~~~~~~~  127 (231)
                      ....+|++++|+.+.. +++..+..
T Consensus       109 ~~~~~~~il~v~~~~~~r~~~~~~~  133 (257)
T d1h65a_         109 LDKTIDVLLYVDRLDAYRVDNLDKL  133 (257)
T ss_dssp             TTCEECEEEEEEESSCCCCCHHHHH
T ss_pred             hcCCCCeEEEEEECCCCCCCHHHHH
Confidence            2357889999998853 56766644

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=9.4e-14  Score=104.15  Aligned_cols=154  Identities=16%  Similarity=0.209  Sum_probs=77.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      ..+|+|+|+||||||||+|+|++....... ...+.+.......... .+......++++....................
T Consensus        16 ~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (188)
T d1puia_          16 GIEVAFAGRSNAGKSSALNTLTNQKSLART-SKTPGRTQLINLFEVA-DGKRLVDLPGYGYAEVPEEMKRKWQRALGEYL   93 (188)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTCCC--------------CCEEEEEEE-TTEEEEECCCCC------CCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceEee-cccccceeeccceecc-cccceeeeecccccchhhhhhhhhhhhhhhhh
Confidence            389999999999999999999998754332 2222332222222222 45555555555544333332322223333333


Q ss_pred             hhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcH-----HHHHHHHHhhH--HHHHhhc----c--chhhhhhhhH
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYT-----DEFLAELKRGA--TELRDQQ----A--EVDSLKEYSK  164 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~-----~~~~~~~~~~~--~~l~~~~----~--~i~~is~~~~  164 (231)
                      ......+.++.+.+...........     .....+..     .+.++..+...  ..+.+.+    .  +++++||++|
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~i~vSA~~g  173 (188)
T d1puia_          94 EKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKK  173 (188)
T ss_dssp             HHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTT
T ss_pred             hhhhheeEEEEeecccccchhHHHHHHHHhhhccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcEEEEeCCCC
Confidence            3345666777778777666665544     11111111     11111111000  1222222    2  6788999999


Q ss_pred             hhHHHHHHHHHHHH
Q 038053          165 QEISKLMGQMQESY  178 (231)
Q Consensus       165 ~~i~~l~~~i~~~~  178 (231)
                      .|+++|++.+.+.+
T Consensus       174 ~Gid~L~~~i~~~~  187 (188)
T d1puia_         174 QGVDKLRQKLDTWF  187 (188)
T ss_dssp             BSHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999887654

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=6.5e-14  Score=104.70  Aligned_cols=140  Identities=19%  Similarity=0.304  Sum_probs=84.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHH---
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRI---  101 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~---  101 (231)
                      .|+|+|.+|||||||||+|+|......  +....|+..............+.++|+|+....     . ........   
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~   78 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQKISIT--SRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHME-----E-KRAINRLMNKA   78 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTCSEEEC--CCCSSCCSSCEEEEEEETTEEEEEESSSSCCHH-----H-HHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceee--ccCCCceEEEEEeeeecCCceeEeecCCCceec-----c-hhhhhhhhhhc
Confidence            799999999999999999999876544  233444433333333336777778899997641     1 11111111   


Q ss_pred             -hhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcH------------HHHHHHHHhhHHHHHhhcc--chhhhhh
Q 038053          102 -GLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYT------------DEFLAELKRGATELRDQQA--EVDSLKE  161 (231)
Q Consensus       102 -~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~------------~~~~~~~~~~~~~l~~~~~--~i~~is~  161 (231)
                       ......++.+++++|.. +.......     .....+.+            .++....    ..+...++  +++++||
T Consensus        79 ~~~~~~~~~~~l~~~d~~-~~~~~~~~~~~~l~~~~~~~i~v~~k~d~~~~~~~~~~~~----~~~~~~~~~~~~~~vSA  153 (179)
T d1egaa1          79 ASSSIGDVELVIFVVEGT-RWTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHL----QFLASQMNFLDIVPISA  153 (179)
T ss_dssp             TTSCCCCEEEEEEEEETT-CCCHHHHHHHHHHHSSSSCEEEEEESTTTCCCHHHHHHHH----HHHHTTSCCSEEEECCT
T ss_pred             cccchhhcceeEEEEecC-ccchhHHHHHHHhhhccCceeeeeeeeeccchhhhhhhHh----hhhhhhcCCCCEEEEeC
Confidence             12235678888899887 43333322     12222222            1111111    13444444  7788999


Q ss_pred             hhHhhHHHHHHHHHHH
Q 038053          162 YSKQEISKLMGQMQES  177 (231)
Q Consensus       162 ~~~~~i~~l~~~i~~~  177 (231)
                      ++|.|+++|++.+.+.
T Consensus       154 ~~g~gi~~L~~~i~~~  169 (179)
T d1egaa1         154 ETGLNVDTIAAIVRKH  169 (179)
T ss_dssp             TTTTTHHHHHHHHHTT
T ss_pred             cCCCCHHHHHHHHHHh
Confidence            9999999998887654

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.51  E-value=2.9e-15  Score=117.01  Aligned_cols=90  Identities=17%  Similarity=0.205  Sum_probs=58.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee------------------EEeeCCcEEEEEeCCCCcC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT------------------TVLKDGQVVNVIDTPGLFD   85 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~------------------~~~~~~~~~~l~Dtpg~~~   85 (231)
                      ++|+++|++|+|||||+|+|++......  ..+++|.......                  ..+ .+..+.++||||..+
T Consensus         6 p~IaIiGh~d~GKSTL~~~L~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iDtPGh~~   82 (227)
T d1g7sa4           6 PIVSVLGHVDHGKTTLLDHIRGSAVASR--EAGGITQHIGATEIPMDVIEGICGDFLKKFSIRE-TLPGLFFIDTPGHEA   82 (227)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHSCC------CCCBTTEEEEEHHHHHHHSCGGGGGCGGGG-TCCEEEEECCCTTSC
T ss_pred             CEEEEEeCCCccHHHHHHHHHhhcchhe--ecCceeeeccccccccccccccccccccceeecc-cccccccccccceec
Confidence            4799999999999999999998643221  2222322111110                  111 456788999999644


Q ss_pred             CCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH
Q 038053           86 SSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA  127 (231)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~  127 (231)
                      ...           ....++..+|++++|+|+..++...+..
T Consensus        83 f~~-----------~~~~~~~~~D~~ilVvda~~g~~~~~~~  113 (227)
T d1g7sa4          83 FTT-----------LRKRGGALADLAILIVDINEGFKPQTQE  113 (227)
T ss_dssp             CTT-----------SBCSSSBSCSEEEEEEETTTCCCHHHHH
T ss_pred             ccc-----------cchhcccccceEEEEEecccCcccchhH
Confidence            221           1123456789999999999889988876

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=7.8e-16  Score=119.81  Aligned_cols=87  Identities=21%  Similarity=0.211  Sum_probs=58.8

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEEeeCCcEEEEEe
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTVLKDGQVVNVID   79 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~D   79 (231)
                      +++.||+..+++++||++++|  .+++|+|+||||||||+|+|+|...+.+|    .+....... ..........+++|
T Consensus         6 v~k~yg~~~~l~~isl~i~~G--ei~~liGpsGsGKSTLl~~i~Gl~~p~sG----~I~i~g~~i~~~~~~~r~ig~v~Q   79 (232)
T d2awna2           6 VTKAWGEVVVSKDINLDIHEG--EFVVFVGPSGCGKSTLLRMIAGLETITSG----DLFIGEKRMNDTPPAERGVGMVFQ   79 (232)
T ss_dssp             EEEEETTEEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHHTSSCCSEE----EEEESSSCCTTSCGGGTCEEEECS
T ss_pred             EEEEECCEEEEeeeEEEEcCC--CEEEEECCCCChHHHHHHHHhcCCCCCCC----EEEECCEECCCCchhhceeeeecc
Confidence            468899999999999999999  99999999999999999999999885433    332221110 00011345789999


Q ss_pred             CCCCcCCCCCchHH
Q 038053           80 TPGLFDSSAGSEFV   93 (231)
Q Consensus        80 tpg~~~~~~~~~~~   93 (231)
                      .|.+++..++.+++
T Consensus        80 ~~~l~~~~tv~eni   93 (232)
T d2awna2          80 SYALYPHLSVAENM   93 (232)
T ss_dssp             SCCC----------
T ss_pred             ccccccchhHHHHH
Confidence            99999877766654

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.50  E-value=8.9e-16  Score=119.90  Aligned_cols=87  Identities=18%  Similarity=0.148  Sum_probs=60.1

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEEeeCCcEEEEEe
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTVLKDGQVVNVID   79 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~D   79 (231)
                      +++.||+..++++++|++++|  ..++|+|+||||||||+++|+|...+.+|    .+....... ..........+++|
T Consensus        12 lsk~yg~~~al~~vsl~v~~G--e~~~liGpsGaGKSTLl~~i~Gl~~p~sG----~I~i~g~~i~~~~~~~r~ig~v~Q   85 (239)
T d1v43a3          12 LTKRFGNFTAVNKLNLTIKDG--EFLVLLGPSGCGKTTTLRMIAGLEEPTEG----RIYFGDRDVTYLPPKDRNISMVFQ   85 (239)
T ss_dssp             EEEEETTEEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHHTSSCCSEE----EEEETTEECTTSCGGGGTEEEEEC
T ss_pred             EEEEECCEEEEcceeEEECCC--CEEEEECCCCChHHHHHHHHHcCCCCCCC----EEEEcceecccCCcccceEEEEee
Confidence            468899999999999999999  99999999999999999999999985433    333222110 00111345789999


Q ss_pred             CCCCcCCCCCchHH
Q 038053           80 TPGLFDSSAGSEFV   93 (231)
Q Consensus        80 tpg~~~~~~~~~~~   93 (231)
                      .|++++..++.+++
T Consensus        86 ~~~l~~~ltv~enl   99 (239)
T d1v43a3          86 SYAVWPHMTVYENI   99 (239)
T ss_dssp             ------CCCHHHHH
T ss_pred             chhhcccchHHHHH
Confidence            99999877765544

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.47  E-value=3.8e-15  Score=116.40  Aligned_cols=87  Identities=17%  Similarity=0.181  Sum_probs=66.7

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee-------EEeeCCc
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT-------TVLKDGQ   73 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~-------~~~~~~~   73 (231)
                      ++|.||+..++++++|++++|  .+++|+|+||||||||+++|+|...+.    .|.+........       .......
T Consensus         9 l~k~yg~~~al~~vsl~i~~G--e~~~liG~sGaGKSTll~~i~gl~~p~----sG~I~~~g~~i~~~~~~~~~~~~~r~   82 (240)
T d1g2912           9 VWKVFGEVTAVREMSLEVKDG--EFMILLGPSGCGKTTTLRMIAGLEEPS----RGQIYIGDKLVADPEKGIFVPPKDRD   82 (240)
T ss_dssp             EEEEETTEEEEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHHTSSCCS----EEEEEETTEEEEEGGGTEECCGGGSS
T ss_pred             EEEEECCEEEEcceeeEEcCC--CEEEEECCCCChHHHHHHHHhcCCCCC----CCEEEECCEEecccchhhhccccccc
Confidence            468899999999999999999  999999999999999999999998843    333333221110       0111346


Q ss_pred             EEEEEeCCCCcCCCCCchHH
Q 038053           74 VVNVIDTPGLFDSSAGSEFV   93 (231)
Q Consensus        74 ~~~l~Dtpg~~~~~~~~~~~   93 (231)
                      ..+++|.|.+++..++.+++
T Consensus        83 ig~v~Q~~~L~~~ltV~eni  102 (240)
T d1g2912          83 IAMVFQSYALYPHMTVYDNI  102 (240)
T ss_dssp             EEEECSCCCCCTTSCHHHHH
T ss_pred             ceecccchhhcchhhhhHhh
Confidence            88999999999987766654

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.46  E-value=9.4e-14  Score=102.62  Aligned_cols=136  Identities=12%  Similarity=0.113  Sum_probs=85.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+|+|.+|||||||+|.|++....     ....|.......... .+..+.+.|+||...           +......
T Consensus         3 ~ki~ivG~~~~GKTsLi~~l~~~~~~-----~~~~t~~~~~~~~~~-~~~~~~~~D~~G~~~-----------~~~~~~~   65 (165)
T d1ksha_           3 LRLLMLGLDNAGKTTILKKFNGEDVD-----TISPTLGFNIKTLEH-RGFKLNIWDVGGQKS-----------LRSYWRN   65 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTTCCCS-----SCCCCSSEEEEEEEE-TTEEEEEEEECCSHH-----------HHTTGGG
T ss_pred             EEEEEECCCCCCHHHHHHHHcCCCCC-----cccceEeeeeeeccc-cccceeeeecCcchh-----------hhhHHHh
Confidence            78999999999999999999987652     223344333334444 778899999999432           2222344


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH----------hcCCCCcHHHHHHHHHhhH----HHHHh-----hcc----chhhhh
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA----------ANGGQPYTDEFLAELKRGA----TELRD-----QQA----EVDSLK  160 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~----~~l~~-----~~~----~i~~is  160 (231)
                      .+..++++++++|.++..+..+..          .....|++ .+.++.|...    .+...     ...    +++.+|
T Consensus        66 ~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~i-iv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  144 (165)
T d1ksha_          66 YFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLL-IFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCS  144 (165)
T ss_dssp             GCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEE-EEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECC
T ss_pred             hhhhhhcceeeeecccchhHHHHHHhhhhhhhhcccCCCceE-EEEeccccccccCHHHHHHHHHhhhhhcCCCEEEEEE
Confidence            567889999999998654443322          12233333 3334433110    11111     111    567789


Q ss_pred             hhhHhhHHHHHHHHHHH
Q 038053          161 EYSKQEISKLMGQMQES  177 (231)
Q Consensus       161 ~~~~~~i~~l~~~i~~~  177 (231)
                      |++|+|+.++++.+.+.
T Consensus       145 a~~g~gv~e~~~~l~~~  161 (165)
T d1ksha_         145 AVTGEDLLPGIDWLLDD  161 (165)
T ss_dssp             TTTCTTHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHH
Confidence            99999999988876553

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.45  E-value=1.8e-13  Score=104.13  Aligned_cols=92  Identities=15%  Similarity=0.158  Sum_probs=67.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccc--------------cCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKAS--------------ADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAG   89 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~--------------~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~   89 (231)
                      .+||++|..++|||||+++|++......+              ....+.|.+.......+ .+..+.++||||..     
T Consensus         4 ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~-~~~~~~~iDtPGh~-----   77 (196)
T d1d2ea3           4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYST-AARHYAHTDCPGHA-----   77 (196)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEEC-SSCEEEEEECSSHH-----
T ss_pred             cEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEe-ceeeEEeecCcchH-----
Confidence            68999999999999999999863110000              11235566555555555 78899999999944     


Q ss_pred             chHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH
Q 038053           90 SEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA  127 (231)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~  127 (231)
                            .+.......+..+|++++|||+.+++..+.+.
T Consensus        78 ------~f~~~~~~~~~~aD~allVVda~~G~~~QT~~  109 (196)
T d1d2ea3          78 ------DYVKNMITGTAPLDGCILVVAANDGPMPQTRE  109 (196)
T ss_dssp             ------HHHHHHHHTSSCCSEEEEEEETTTCSCHHHHH
T ss_pred             ------HHHHHHHHHHhhcCeEEEEEEcCCCCchhHHH
Confidence                  34444556668899999999999999988765

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.44  E-value=1.6e-13  Score=104.48  Aligned_cols=142  Identities=12%  Similarity=0.149  Sum_probs=82.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccc-cCCCCcceeeeeeeE----------------------EeeCCcEEEEEeC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKAS-ADSSGVTKTCEMKTT----------------------VLKDGQVVNVIDT   80 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~-~~~~~~t~~~~~~~~----------------------~~~~~~~~~l~Dt   80 (231)
                      .+||++|..++|||||+|+|+|....... ....+.|........                      .......+.++||
T Consensus         6 inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDt   85 (195)
T d1kk1a3           6 VNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDA   85 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEEC
T ss_pred             EEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEeeecc
Confidence            57899999999999999999985421110 112223322111110                      0001245789999


Q ss_pred             CCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHH-HHH-----hcCCCCcHHHHHHHHHh--------hH
Q 038053           81 PGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQE-EEA-----ANGGQPYTDEFLAELKR--------GA  146 (231)
Q Consensus        81 pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~--------~~  146 (231)
                      ||-.           .+..........+|.+++++|+..++... ...     ...+.+.++.++++++.        ..
T Consensus        86 PGh~-----------~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~~~~iiv~inK~D~~d~~~~~~~~  154 (195)
T d1kk1a3          86 PGHE-----------ALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENY  154 (195)
T ss_dssp             SSHH-----------HHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHH
T ss_pred             chhh-----------hhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhcCccceeeeecccchhhHHHHHHH
Confidence            9933           34555555667889999999998775332 222     11223322222222221        00


Q ss_pred             HHHHhhcc-------chhhhhhhhHhhHHHHHHHHHH
Q 038053          147 TELRDQQA-------EVDSLKEYSKQEISKLMGQMQE  176 (231)
Q Consensus       147 ~~l~~~~~-------~i~~is~~~~~~i~~l~~~i~~  176 (231)
                      ..+.+.+.       +++++||++|.|+++|++.+.+
T Consensus       155 ~~~~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~  191 (195)
T d1kk1a3         155 RQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIED  191 (195)
T ss_dssp             HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             HHHHHHhccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            12222222       5688999999999999988765

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.43  E-value=5.3e-15  Score=115.89  Aligned_cols=85  Identities=18%  Similarity=0.159  Sum_probs=64.7

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee---eEEeeCCcEEEE
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK---TTVLKDGQVVNV   77 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~l   77 (231)
                      ++|+||+++++++++|++++|  .++||+|+||||||||+|+|+|...+.    .|.++......   .... .....++
T Consensus         8 l~k~yg~~~vl~~vs~~v~~G--ei~glvG~nGaGKSTLl~~l~G~~~p~----~G~i~i~G~~i~~~~~~~-~~~i~~v   80 (238)
T d1vpla_           8 LRKRIGKKEILKGISFEIEEG--EIFGLIGPNGAGKTTTLRIISTLIKPS----SGIVTVFGKNVVEEPHEV-RKLISYL   80 (238)
T ss_dssp             EEEEETTEEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHTTSSCCS----EEEEEETTEETTTCHHHH-HTTEEEE
T ss_pred             EEEEECCEEEEccceeEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCC----CCEEEECcEecccChHHH-HhhEeEe
Confidence            468999999999999999999  999999999999999999999999843    33333221110   0011 3567789


Q ss_pred             EeCCCCcCCCCCchH
Q 038053           78 IDTPGLFDSSAGSEF   92 (231)
Q Consensus        78 ~Dtpg~~~~~~~~~~   92 (231)
                      ++.+++++..+..++
T Consensus        81 pq~~~~~~~ltv~e~   95 (238)
T d1vpla_          81 PEEAGAYRNMQGIEY   95 (238)
T ss_dssp             CTTCCCCTTSBHHHH
T ss_pred             eeccccCCCccHHHH
Confidence            999999987765543

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.42  E-value=4.5e-15  Score=116.49  Aligned_cols=85  Identities=18%  Similarity=0.143  Sum_probs=62.2

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE----EeeCCcEEE
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT----VLKDGQVVN   76 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~   76 (231)
                      +++.||+..+++++||++++|  .+++|+|+||||||||+|+|+|...+.    .|.+.........    ...+...++
T Consensus        12 l~k~yg~~~al~~vs~~i~~G--ei~~liGpnGaGKSTl~~~i~Gl~~p~----~G~I~~~G~~i~~~~~~~~~r~gi~~   85 (240)
T d1ji0a_          12 LHVYYGAIHAIKGIDLKVPRG--QIVTLIGANGAGKTTTLSAIAGLVRAQ----KGKIIFNGQDITNKPAHVINRMGIAL   85 (240)
T ss_dssp             EEEEETTEEEEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHTTSSCCS----EEEEEETTEECTTCCHHHHHHTTEEE
T ss_pred             EEEEECCEEEEeeeeEEECCC--CEEEEECCCCCcHHHHHHHHhCCCCCC----ccEEEecccccccccHHHHHHhcccc
Confidence            468899999999999999999  999999999999999999999998843    3333332211100    000123667


Q ss_pred             EEeCCCCcCCCCCch
Q 038053           77 VIDTPGLFDSSAGSE   91 (231)
Q Consensus        77 l~Dtpg~~~~~~~~~   91 (231)
                      +++.+++++..++.+
T Consensus        86 ~~q~~~l~~~ltv~e  100 (240)
T d1ji0a_          86 VPEGRRIFPELTVYE  100 (240)
T ss_dssp             ECSSCCCCTTSBHHH
T ss_pred             cCcccccCCcccHHH
Confidence            888888888666544

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.41  E-value=8.2e-15  Score=114.48  Aligned_cols=87  Identities=17%  Similarity=0.154  Sum_probs=64.5

Q ss_pred             CCCCC--CCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee------EEeeCC
Q 038053            1 MSSGM--GERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT------TVLKDG   72 (231)
Q Consensus         1 ~~~~~--~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~------~~~~~~   72 (231)
                      ++|.|  |...++++++|++++|  .+++|+|+||||||||+++|+|...+.    .|.+........      ......
T Consensus         9 lsk~y~~g~~~aL~~vsl~i~~G--e~~~iiG~sGsGKSTll~~i~gl~~p~----~G~I~~~g~~i~~~~~~~~~~~rr   82 (242)
T d1oxxk2           9 VSKVFKKGKVVALDNVNINIENG--ERFGILGPSGAGKTTFMRIIAGLDVPS----TGELYFDDRLVASNGKLIVPPEDR   82 (242)
T ss_dssp             EEEEEGGGTEEEEEEEEEEECTT--CEEEEECSCHHHHHHHHHHHHTSSCCS----EEEEEETTEEEEETTEESSCGGGS
T ss_pred             EEEEECCCCEEEEeceEEEECCC--CEEEEECCCCCcHHHHHHHHHcCcCCC----CceEEECCEEeecCchhhcchhhc
Confidence            36777  5678899999999999  999999999999999999999998843    333333222111      011134


Q ss_pred             cEEEEEeCCCCcCCCCCchHH
Q 038053           73 QVVNVIDTPGLFDSSAGSEFV   93 (231)
Q Consensus        73 ~~~~l~Dtpg~~~~~~~~~~~   93 (231)
                      ...+++|.|.+++..++.+++
T Consensus        83 ~ig~vfQ~~~L~p~ltv~eni  103 (242)
T d1oxxk2          83 KIGMVFQTWALYPNLTAFENI  103 (242)
T ss_dssp             CEEEEETTSCCCTTSCHHHHH
T ss_pred             cceEEeccccccccccHHHHh
Confidence            588999999999877766554

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.41  E-value=1.5e-13  Score=111.25  Aligned_cols=90  Identities=18%  Similarity=0.162  Sum_probs=72.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeC----------------CcEEEEEeCCCCcCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKD----------------GQVVNVIDTPGLFDSS   87 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~l~Dtpg~~~~~   87 (231)
                      ..|||||.||||||||||+|++...+.. .+.|.+|.++..+......                ...+.++|.||+.++.
T Consensus        11 ~kiGivG~Pn~GKSTlfnalT~~~~~~~-anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~gA   89 (296)
T d1ni3a1          11 LKTGIVGMPNVGKSTFFRAITKSVLGNP-ANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA   89 (296)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHSTTTST-TCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCCCCCc-CCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccccc
Confidence            8999999999999999999998765433 3788888887776655421                2367789999999988


Q ss_pred             CCchHHHHHHHHHHhhhcCCccEEEEEEECC
Q 038053           88 AGSEFVGKEIVKRIGLAKGGIHAVLVVFSVR  118 (231)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~  118 (231)
                      .....++..++..+    ..+|++++||++.
T Consensus        90 ~~g~GLGn~fL~~i----r~~d~lihVV~~f  116 (296)
T d1ni3a1          90 STGVGLGNAFLSHV----RAVDAIYQVVRAF  116 (296)
T ss_dssp             CSSSSSCHHHHHHH----TTCSEEEEEEECC
T ss_pred             ccccccHHHHHHHh----hccceeEEEEecc
Confidence            87777888887766    4569999999986

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.41  E-value=4.1e-15  Score=115.35  Aligned_cols=87  Identities=17%  Similarity=0.100  Sum_probs=64.8

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEEeeCCcEEEEEe
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTVLKDGQVVNVID   79 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~D   79 (231)
                      +|++|+. .+++++||++++|  ..++|+|+||||||||+++|+|...+.    .|.+..+.... ..........+++|
T Consensus         7 lsk~y~~-~aL~~vs~~i~~G--e~~~liGpsGaGKSTll~~l~Gl~~p~----sG~I~~~G~~i~~~~~~~r~ig~v~Q   79 (229)
T d3d31a2           7 LSRKWKN-FSLDNLSLKVESG--EYFVILGPTGAGKTLFLELIAGFHVPD----SGRILLDGKDVTDLSPEKHDIAFVYQ   79 (229)
T ss_dssp             EEEECSS-CEEEEEEEEECTT--CEEEEECCCTHHHHHHHHHHHTSSCCS----EEEEEETTEECTTSCHHHHTCEEECT
T ss_pred             EEEEeCC-EEEeeeEEEECCC--CEEEEECCCCCcHHHHHHHHhcCcCCC----CCEEEEccEeccccchhHhcceeecc
Confidence            4788987 4899999999999  999999999999999999999998843    33333322111 00011235788999


Q ss_pred             CCCCcCCCCCchHHH
Q 038053           80 TPGLFDSSAGSEFVG   94 (231)
Q Consensus        80 tpg~~~~~~~~~~~~   94 (231)
                      .|.+++..++.+++.
T Consensus        80 ~~~l~~~~tV~enl~   94 (229)
T d3d31a2          80 NYSLFPHMNVKKNLE   94 (229)
T ss_dssp             TCCCCTTSCHHHHHH
T ss_pred             ccccCccccHHHHHH
Confidence            999999887776653

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.40  E-value=3.3e-14  Score=112.53  Aligned_cols=87  Identities=15%  Similarity=0.119  Sum_probs=64.7

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEE------------
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTV------------   68 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~------------   68 (231)
                      ++|.||+..+++++||++.+|  .+++|+|+||||||||+++|+|...+.+    |.+..........            
T Consensus         8 l~k~yg~~~al~~vs~~i~~G--Ei~~iiG~sGsGKSTLl~~i~Gl~~p~~----G~I~~~G~~i~~~~~~~~~~~~~~~   81 (258)
T d1b0ua_           8 LHKRYGGHEVLKGVSLQARAG--DVISIIGSSGSGKSTFLRCINFLEKPSE----GAIIVNGQNINLVRDKDGQLKVADK   81 (258)
T ss_dssp             EEEEETTEEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHTTSSCCSE----EEEEETTEECCEEECTTSSEEESCH
T ss_pred             EEEEECCEEEEcceeeEEcCC--CEEEEECCCCCcHHHHHHHHHcCccCCC----CCEEECCEEeccCCccchhcccccH
Confidence            468899999999999999999  9999999999999999999999987433    3332221111000            


Q ss_pred             ----eeCCcEEEEEeCCCCcCCCCCchHH
Q 038053           69 ----LKDGQVVNVIDTPGLFDSSAGSEFV   93 (231)
Q Consensus        69 ----~~~~~~~~l~Dtpg~~~~~~~~~~~   93 (231)
                          .......+++|.|++++..++.+++
T Consensus        82 ~~~~~~r~~ig~vfQ~~~l~~~~tv~env  110 (258)
T d1b0ua_          82 NQLRLLRTRLTMVFQHFNLWSHMTVLENV  110 (258)
T ss_dssp             HHHHHHHHHEEEECSSCCCCTTSCHHHHH
T ss_pred             hHHHHHhcceEEEEechhhccchhcchhh
Confidence                0023578899999999877765554

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.39  E-value=4.9e-15  Score=117.36  Aligned_cols=87  Identities=20%  Similarity=0.131  Sum_probs=63.2

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee----EEeeCCcEEE
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT----TVLKDGQVVN   76 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~~~   76 (231)
                      +||+||+..+++++||++++|  .+++|+|+||||||||+|+|+|...+.+    |.+........    .........+
T Consensus        10 lsk~yg~~~aL~~vs~~v~~G--ei~~liG~nGaGKSTLl~~i~Gl~~p~~----G~I~~~g~~i~~~~~~~~~~~gi~~   83 (254)
T d1g6ha_          10 IVKYFGEFKALDGVSISVNKG--DVTLIIGPNGSGKSTLINVITGFLKADE----GRVYFENKDITNKEPAELYHYGIVR   83 (254)
T ss_dssp             EEEEETTEEEEEEECCEEETT--CEEEEECSTTSSHHHHHHHHTTSSCCSE----EEEEETTEECTTCCHHHHHHHTEEE
T ss_pred             EEEEECCeEEEcceEEEECCC--CEEEEECCCCCcHHHHHHHHHCCCcCCC----cEEEECCEeccchhHHHHHHhcCCc
Confidence            478899999999999999999  9999999999999999999999988433    33332221110    0000123677


Q ss_pred             EEeCCCCcCCCCCchHH
Q 038053           77 VIDTPGLFDSSAGSEFV   93 (231)
Q Consensus        77 l~Dtpg~~~~~~~~~~~   93 (231)
                      +++.|.+++..++.+++
T Consensus        84 v~Q~~~~~~~ltv~enl  100 (254)
T d1g6ha_          84 TFQTPQPLKEMTVLENL  100 (254)
T ss_dssp             CCCCCGGGGGSBHHHHH
T ss_pred             cCCccccCCCCeeeeee
Confidence            89999888766655443

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.35  E-value=5.4e-13  Score=99.34  Aligned_cols=135  Identities=13%  Similarity=0.072  Sum_probs=82.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+++|.+|||||||++.+++.......     .|.......... ....+.+.|+||....           ......
T Consensus        13 ~kIvlvG~~~vGKTSli~rl~~~~~~~~~-----~t~~~~~~~~~~-~~~~~~i~D~~g~~~~-----------~~~~~~   75 (173)
T d1e0sa_          13 MRILMLGLDAAGKTTILYKLKLGQSVTTI-----PTVGFNVETVTY-KNVKFNVWDVGGQDKI-----------RPLWRH   75 (173)
T ss_dssp             EEEEEEEETTSSHHHHHHHTTCCCCEEEE-----EETTEEEEEEEE-TTEEEEEEEESCCGGG-----------HHHHGG
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCcc-----ceeeeeEEEeec-cceeeEEecCCCcchh-----------hhHHHh
Confidence            79999999999999999999876643221     122222222333 6778889999997651           223345


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH----------hcCCCCcHHHHHHHHHhh----HHHHHhhc-----c----chhhhh
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA----------ANGGQPYTDEFLAELKRG----ATELRDQQ-----A----EVDSLK  160 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~----~~~l~~~~-----~----~i~~is  160 (231)
                      .+..++++++|+|+++..+.....          .....|++ .+.++.+..    ...+...+     .    .++.+|
T Consensus        76 ~~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~pii-iv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~S  154 (173)
T d1e0sa_          76 YYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIIL-IFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSC  154 (173)
T ss_dssp             GTTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEE-EEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECB
T ss_pred             hhcccceEEEEEecccchhHHHHHHHHHHHhhhcccccceee-eeeecccccccccHHHHHHHHHHHHHHhCCCEEEEee
Confidence            568899999999998433322221          11122222 333333311    01222211     1    466789


Q ss_pred             hhhHhhHHHHHHHHHH
Q 038053          161 EYSKQEISKLMGQMQE  176 (231)
Q Consensus       161 ~~~~~~i~~l~~~i~~  176 (231)
                      |++|+|+.++++.+.+
T Consensus       155 A~tg~gv~e~~~~l~~  170 (173)
T d1e0sa_         155 ATSGDGLYEGLTWLTS  170 (173)
T ss_dssp             TTTTBTHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHH
Confidence            9999999999888765

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.35  E-value=3.5e-13  Score=101.16  Aligned_cols=138  Identities=13%  Similarity=0.098  Sum_probs=83.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      ..+|+++|.+|||||||++.|.+.......+     |.......... .+..+.+.|+||.......           ..
T Consensus        17 ~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~~-----t~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~-----------~~   79 (182)
T d1moza_          17 ELRILILGLDGAGKTTILYRLQIGEVVTTKP-----TIGFNVETLSY-KNLKLNVWDLGGQTSIRPY-----------WR   79 (182)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTCCSEEEEECS-----STTCCEEEEEE-TTEEEEEEEEC----CCTT-----------GG
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCcccc-----ccceEEEEEee-CCEEEEEEecccccccchh-----------HH
Confidence            3899999999999999999998876543322     21112222333 6778889999997543211           22


Q ss_pred             hhcCCccEEEEEEECCCCCCHHHHH----------hcCCCCcHHHHHHHHHhh----HHHHHhhc---------cchhhh
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEEEA----------ANGGQPYTDEFLAELKRG----ATELRDQQ---------AEVDSL  159 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~----~~~l~~~~---------~~i~~i  159 (231)
                      ..+..++++++++|.++..+..+..          .....|++ .+.++.|..    ..++...+         -+++.+
T Consensus        80 ~~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~pil-iv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~  158 (182)
T d1moza_          80 CYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALL-VFANKQDQPGALSASEVSKELNLVELKDRSWSIVAS  158 (182)
T ss_dssp             GTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEE-EEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEE
T ss_pred             hhhccceeEEEEeeecccccchhHHHHHHHHHHhhccCCcceE-EEEEeeccccccCHHHHHHHHHHHHHhhCCCEEEEE
Confidence            3457889999999998665554422          11223332 333443321    12222211         156779


Q ss_pred             hhhhHhhHHHHHHHHHHHH
Q 038053          160 KEYSKQEISKLMGQMQESY  178 (231)
Q Consensus       160 s~~~~~~i~~l~~~i~~~~  178 (231)
                      ||++|+|++++++.+.+..
T Consensus       159 SA~~g~gv~e~~~~l~~~i  177 (182)
T d1moza_         159 SAIKGEGITEGLDWLIDVI  177 (182)
T ss_dssp             BGGGTBTHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHH
Confidence            9999999999888876643

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.35  E-value=7e-13  Score=98.78  Aligned_cols=135  Identities=16%  Similarity=0.139  Sum_probs=81.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+++|.+|||||||+|.|++.......+ ..+.+    ...... .+..+.+.|+||....           ......
T Consensus        17 ~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~-~~~~~----~~~i~~-~~~~~~i~d~~g~~~~-----------~~~~~~   79 (176)
T d1fzqa_          17 VRILLLGLDNAGKTTLLKQLASEDISHITP-TQGFN----IKSVQS-QGFKLNVWDIGGQRKI-----------RPYWRS   79 (176)
T ss_dssp             EEEEEEESTTSSHHHHHHHHCCSCCEEEEE-ETTEE----EEEEEE-TTEEEEEEECSSCGGG-----------HHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCccee-eeeee----EEEecc-CCeeEeEeeccccccc-----------hhHHHH
Confidence            799999999999999999998876532211 11222    222223 5677889999986541           111223


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH----------hcCCCCcHHHHHHHHHhhH----HHHHhh---------ccchhhhh
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA----------ANGGQPYTDEFLAELKRGA----TELRDQ---------QAEVDSLK  160 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~----~~l~~~---------~~~i~~is  160 (231)
                      .+..+|++++++|.++..+..+..          .....|++ .+.++.|...    ..+.+.         ..+++.+|
T Consensus        80 ~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pil-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  158 (176)
T d1fzqa_          80 YFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVL-IFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCS  158 (176)
T ss_dssp             HHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEE-EEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECC
T ss_pred             HhhccceeEEeeccccccchhhhhhhhhhhhhhhccCCCeEE-EEEEeccccccccHHHHHHHHHHHHHHhcCCEEEEEe
Confidence            347789999999998654443322          12233433 2233333100    111111         11567789


Q ss_pred             hhhHhhHHHHHHHHHH
Q 038053          161 EYSKQEISKLMGQMQE  176 (231)
Q Consensus       161 ~~~~~~i~~l~~~i~~  176 (231)
                      |++|.|++++++.+.+
T Consensus       159 A~tg~gv~e~~~~l~~  174 (176)
T d1fzqa_         159 ALTGEGVQDGMNWVCK  174 (176)
T ss_dssp             TTTCTTHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHh
Confidence            9999999998886654

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.35  E-value=4.2e-13  Score=99.59  Aligned_cols=141  Identities=11%  Similarity=0.045  Sum_probs=77.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEe-eCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      .+|+++|.+|||||||++.+++......  ..+..+.......... .....+.+.||||...           +.....
T Consensus         6 ~Ki~vvG~~~vGKTsLi~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~-----------~~~~~~   72 (169)
T d3raba_           6 FKILIIGNSSVGKTSFLFRYADDSFTPA--FVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQER-----------YRTITT   72 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCSS--CCCCCSEEEEEEEEEETTEEEEEEEEEECCSGG-----------GHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHcCCCCcc--cccccccceeeEEEEeecceEEEEEEECCCchh-----------hHHHHH
Confidence            5899999999999999999986642111  1222222222222222 0124577899999543           112223


Q ss_pred             hhcCCccEEEEEEECCCCCCHHHHH--------hcCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhhhhH
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEEEA--------ANGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKEYSK  164 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~~~~  164 (231)
                      ..+..+|++++|+|.++.-+.....        .......++.+.++.+..         ...+....+ +.+.+||++|
T Consensus        73 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g  152 (169)
T d3raba_          73 AYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDN  152 (169)
T ss_dssp             TTTTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTT
T ss_pred             HHHhcCCEEEEEEECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccccccccchhhhHHHHHHcCCEEEEecCCCC
Confidence            3567899999999998432221111        111111111222222210         012222222 6778999999


Q ss_pred             hhHHHHHHHHHHH
Q 038053          165 QEISKLMGQMQES  177 (231)
Q Consensus       165 ~~i~~l~~~i~~~  177 (231)
                      .|+++++..+.+.
T Consensus       153 ~gv~e~f~~l~~~  165 (169)
T d3raba_         153 INVKQTFERLVDV  165 (169)
T ss_dssp             BSHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHH
Confidence            9999988877664

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.34  E-value=4.1e-13  Score=107.71  Aligned_cols=89  Identities=18%  Similarity=0.146  Sum_probs=65.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeC----------------CcEEEEEeCCCCcCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKD----------------GQVVNVIDTPGLFDSS   87 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~l~Dtpg~~~~~   87 (231)
                      ..|||||.||||||||||+|++.....  .+.+.+|.++..+.+....                ...+.++|.||+.++.
T Consensus         3 ~~~GivG~Pn~GKSTlf~~lt~~~~~~--~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga   80 (278)
T d1jala1           3 FKCGIVGLPNVGKSTLFNALTKAGIEA--ANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA   80 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred             ceEEEECCCCCCHHHHHHHHHCCCCcc--ccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCc
Confidence            689999999999999999999887533  3577788777776654411                1246689999999876


Q ss_pred             CCchHHHHHHHHHHhhhcCCccEEEEEEECC
Q 038053           88 AGSEFVGKEIVKRIGLAKGGIHAVLVVFSVR  118 (231)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~  118 (231)
                      +....++..++.++.    ++|++++|||+.
T Consensus        81 ~~g~Glg~~FL~~ir----~~d~LihVVr~f  107 (278)
T d1jala1          81 SKGEGLGNKFLANIR----ETDAIGHVVRCF  107 (278)
T ss_dssp             HHHGGGTCCHHHHHH----TCSEEEEEEECS
T ss_pred             ccCCCccHHHHHHHH----hccceEEEeecc
Confidence            655666767777765    459999999975

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.34  E-value=2.5e-12  Score=98.46  Aligned_cols=142  Identities=15%  Similarity=0.176  Sum_probs=81.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCC-CCcce-----eeeeee----------------------EEeeCCcEE
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADS-SGVTK-----TCEMKT----------------------TVLKDGQVV   75 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~-~~~t~-----~~~~~~----------------------~~~~~~~~~   75 (231)
                      .+|+++|..++|||||+|.|+|.......... ...+.     ......                      ......+.+
T Consensus         9 ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~   88 (205)
T d2qn6a3           9 VNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRI   88 (205)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEE
T ss_pred             eEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccceEEE
Confidence            68999999999999999999985432111000 00000     000000                      000012467


Q ss_pred             EEEeCCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCC-CHHHHH-----hcCCCCcHHHHHHHHHhhH---
Q 038053           76 NVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRF-SQEEEA-----ANGGQPYTDEFLAELKRGA---  146 (231)
Q Consensus        76 ~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~---  146 (231)
                      .++||||-.           .+..........+|.+++|+|+.+++ ....+.     ...+.+.++.++|+++.-.   
T Consensus        89 ~iiD~PGH~-----------df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~~i~~iIV~vNK~Dl~~~~~  157 (205)
T d2qn6a3          89 SFIDAPGHE-----------VLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEE  157 (205)
T ss_dssp             EEEECSCHH-----------HHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECGGGSCHHH
T ss_pred             EEeccchHH-----------HHHhhhhcceeccccccccccccccccchhHHHHHHHHHHcCCceeeeccccCCCccchH
Confidence            899999944           34444555667899999999999876 433332     2222222222334433210   


Q ss_pred             -----HHHHhhcc-------chhhhhhhhHhhHHHHHHHHHH
Q 038053          147 -----TELRDQQA-------EVDSLKEYSKQEISKLMGQMQE  176 (231)
Q Consensus       147 -----~~l~~~~~-------~i~~is~~~~~~i~~l~~~i~~  176 (231)
                           ..+...+.       +++++||++|.|+++|++.+..
T Consensus       158 ~~~~~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~  199 (205)
T d2qn6a3         158 ALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEE  199 (205)
T ss_dssp             HHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHh
Confidence                 12222221       6788999999999999888765

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.34  E-value=2.6e-13  Score=110.92  Aligned_cols=88  Identities=16%  Similarity=0.074  Sum_probs=45.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEe-----------------------eCCcEEEEEeCC
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVL-----------------------KDGQVVNVIDTP   81 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-----------------------~~~~~~~l~Dtp   81 (231)
                      .|||||.||||||||||+|+|.....  .++|.+|.++..+....                       .....+.++|+|
T Consensus         2 ~v~lvG~pn~GKStlfn~lt~~~~~v--~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~p   79 (319)
T d1wxqa1           2 EIGVVGKPNVGKSTFFSAATLVDVEI--ANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA   79 (319)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred             cEeEECCCCCCHHHHHHHHHCCCCch--hcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECC
Confidence            69999999999999999999987643  25777776655443210                       012357899999


Q ss_pred             CCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECC
Q 038053           82 GLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVR  118 (231)
Q Consensus        82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~  118 (231)
                      |+.++.+....++    ..+...+..+|++++|||+.
T Consensus        80 Gli~ga~~g~~~~----~~~l~~i~~~d~ii~VVd~~  112 (319)
T d1wxqa1          80 GLVPGAHEGRGLG----NKFLDDLRMASALIHVVDAT  112 (319)
T ss_dssp             -------------------CCCSSTTCSEEEEEEETT
T ss_pred             CcccchhcccchH----HHHHHhhccceEEEEEeccc
Confidence            9987554333333    33344567899999999986

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.33  E-value=1.6e-12  Score=95.81  Aligned_cols=136  Identities=15%  Similarity=0.078  Sum_probs=80.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+|+|++|||||||+|.+++....    .....|.......... ....+.+.|+||-..           +......
T Consensus         3 ~ki~i~G~~~~GKTsLl~~l~~~~~~----~~~~~T~~~~~~~~~~-~~~~~~i~D~~G~~~-----------~~~~~~~   66 (164)
T d1zd9a1           3 MELTLVGLQYSGKTTFVNVIASGQFN----EDMIPTVGFNMRKITK-GNVTIKLWDIGGQPR-----------FRSMWER   66 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCC----CSCCCCCSEEEEEEEE-TTEEEEEEEECCSHH-----------HHTTHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHcCCCC----Ccccccceeeeeeeee-eeEEEEEeecccccc-----------ccccccc
Confidence            68999999999999999999876542    1112233333333333 677888999999432           1111122


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH----------hcCCCCcHHHHHHHHHhh----HHHHHhhc---------cchhhhh
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA----------ANGGQPYTDEFLAELKRG----ATELRDQQ---------AEVDSLK  160 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~----~~~l~~~~---------~~i~~is  160 (231)
                      .+..+|++++++|+++..+.....          .....|++ .+.++.|..    ..++.+.+         -+++.+|
T Consensus        67 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~-lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~S  145 (164)
T d1zd9a1          67 YCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVL-VLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSIS  145 (164)
T ss_dssp             HHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEE-EEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECC
T ss_pred             cccccchhhcccccccccccchhhhhhhhhhhhhcccCCcEE-EEEeccccchhhhHHHHHHHHHHHHHHhCCCEEEEEe
Confidence            346789999999998544332222          11233333 222332210    01121111         1567789


Q ss_pred             hhhHhhHHHHHHHHHH
Q 038053          161 EYSKQEISKLMGQMQE  176 (231)
Q Consensus       161 ~~~~~~i~~l~~~i~~  176 (231)
                      +++|.|++++++.+.+
T Consensus       146 a~~g~gv~e~~~~l~~  161 (164)
T d1zd9a1         146 CKEKDNIDITLQWLIQ  161 (164)
T ss_dssp             TTTCTTHHHHHHHHHH
T ss_pred             CcCCcCHHHHHHHHHH
Confidence            9999999998877654

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.33  E-value=6.4e-12  Score=91.47  Aligned_cols=134  Identities=10%  Similarity=0.034  Sum_probs=76.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhh
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLA  104 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~  104 (231)
                      +|+|+|++|||||||+|.|++.......+    .+ ......... ....+.+.|+||....           .......
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~~~~~~~~----~~-~~~~~~~~~-~~~~~~~~d~~g~~~~-----------~~~~~~~   64 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLGEIVTTIP----TI-GFNVETVEY-KNISFTVWDVGGQDKI-----------RPLWRHY   64 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHCSSCCCC----CS-SCCEEEEEC-SSCEEEEEECCCCGGG-----------HHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCcccc----ce-eeEEEEEee-eeEEEEEecCCCcccc-----------hhhhhhh
Confidence            79999999999999999998776422111    11 111112222 5677889999997651           1112233


Q ss_pred             cCCccEEEEEEECCCCCCHHHHH----------hcCCCCcHHHHHHHHHhh----HHHHH-----hhc----cchhhhhh
Q 038053          105 KGGIHAVLVVFSVRSRFSQEEEA----------ANGGQPYTDEFLAELKRG----ATELR-----DQQ----AEVDSLKE  161 (231)
Q Consensus       105 ~~~~~~il~vvd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~----~~~l~-----~~~----~~i~~is~  161 (231)
                      ...++++++++|..+..+.....          .....+.. .+.++.+..    ..++.     ...    .++.++||
T Consensus        65 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA  143 (160)
T d1r8sa_          65 FQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLL-VFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCA  143 (160)
T ss_dssp             TTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEE-EEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBT
T ss_pred             hccceeEEEEEEecChHHHHHHHHHHHHHHHhhcccCceEE-EEeecccccccccHHHHHHHHHHHHHhhCCCEEEEeEC
Confidence            46789999999998543333322          11111221 111111100    00111     111    16777999


Q ss_pred             hhHhhHHHHHHHHHH
Q 038053          162 YSKQEISKLMGQMQE  176 (231)
Q Consensus       162 ~~~~~i~~l~~~i~~  176 (231)
                      ++|.|++++++.+.+
T Consensus       144 ktg~gi~e~~~~l~~  158 (160)
T d1r8sa_         144 TSGDGLYEGLDWLSN  158 (160)
T ss_dssp             TTTBTHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHh
Confidence            999999999887654

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.32  E-value=6.6e-14  Score=108.71  Aligned_cols=86  Identities=15%  Similarity=0.039  Sum_probs=61.0

Q ss_pred             CCCCCCc----ccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE-------Eee
Q 038053            2 SSGMGER----VIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT-------VLK   70 (231)
Q Consensus         2 ~~~~~~~----~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~-------~~~   70 (231)
                      ++.|+..    .+++++||++++|  ..++|+|+||||||||+++|+|...+    +.|.+..+......       ...
T Consensus         8 sk~y~~~~~~~~al~~isl~i~~G--e~~~iiG~sGsGKSTLl~~i~gl~~p----~sG~I~~~g~~i~~~~~~~~~~~r   81 (230)
T d1l2ta_           8 TKTYKMGEEIIYALKNVNLNIKEG--EFVSIMGPSGSGKSTMLNIIGCLDKP----TEGEVYIDNIKTNDLDDDELTKIR   81 (230)
T ss_dssp             EEEEEETTEEEEEEEEEEEEECTT--CEEEEECSTTSSHHHHHHHHTTSSCC----SEEEEEETTEECTTCCHHHHHHHH
T ss_pred             EEEeCCCCeeEEEEeceEEEEcCC--CEEEEECCCCCCcchhhHhccCCCCC----CcceeEECCEEcCcCChhhcchhh
Confidence            5566532    4799999999999  99999999999999999999999884    33333332211100       000


Q ss_pred             CCcEEEEEeCCCCcCCCCCchHH
Q 038053           71 DGQVVNVIDTPGLFDSSAGSEFV   93 (231)
Q Consensus        71 ~~~~~~l~Dtpg~~~~~~~~~~~   93 (231)
                      .....+++|.|.+++..++.+++
T Consensus        82 ~~~ig~v~Q~~~l~~~~tv~eni  104 (230)
T d1l2ta_          82 RDKIGFVFQQFNLIPLLTALENV  104 (230)
T ss_dssp             HHHEEEECTTCCCCTTSCHHHHH
T ss_pred             cceEEEEecchhhCcCccHHHHH
Confidence            12478999999999877765554

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.32  E-value=8.4e-14  Score=106.36  Aligned_cols=79  Identities=13%  Similarity=0.029  Sum_probs=57.6

Q ss_pred             CCCCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeC
Q 038053            1 MSSGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDT   80 (231)
Q Consensus         1 ~~~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dt   80 (231)
                      +|++|+ +++|++++|++++|  .+++|+|+||||||||+++|+|...+.    .|.+.......  .......+++.+.
T Consensus         8 ls~~y~-~~vl~~is~~i~~G--ei~~l~G~NGsGKSTLl~~i~gl~~p~----~G~I~~~g~~i--~~~~~~i~~~~~~   78 (200)
T d1sgwa_           8 LSVGYD-KPVLERITMTIEKG--NVVNFHGPNGIGKTTLLKTISTYLKPL----KGEIIYNGVPI--TKVKGKIFFLPEE   78 (200)
T ss_dssp             EEEESS-SEEEEEEEEEEETT--CCEEEECCTTSSHHHHHHHHTTSSCCS----EEEEEETTEEG--GGGGGGEEEECSS
T ss_pred             EEEEeC-CeEEeceEEEEcCC--CEEEEECCCCChHHHHHHHHhcccccC----CCEEEECCEeh--hHhcCcEEEEeec
Confidence            356785 57999999999999  999999999999999999999998843    33333322111  0114566778888


Q ss_pred             CCCcCCCC
Q 038053           81 PGLFDSSA   88 (231)
Q Consensus        81 pg~~~~~~   88 (231)
                      +.++...+
T Consensus        79 ~~~~~~~t   86 (200)
T d1sgwa_          79 IIVPRKIS   86 (200)
T ss_dssp             CCCCTTSB
T ss_pred             ccCCCCcC
Confidence            77766444

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.1e-12  Score=97.45  Aligned_cols=139  Identities=14%  Similarity=0.113  Sum_probs=78.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCc--EEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+|+|.+|||||||++.+++......  ..+..+.......... .+.  .+.+.||||...           +....
T Consensus         6 ~Ki~lvG~~~vGKTsLi~~l~~~~f~~~--~~~~~~~~~~~~~~~~-~~~~~~l~i~Dt~G~e~-----------~~~~~   71 (171)
T d2ew1a1           6 FKIVLIGNAGVGKTCLVRRFTQGLFPPG--QGATIGVDFMIKTVEI-NGEKVKLQIWDTAGQER-----------FRSIT   71 (171)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSSCCTT--CCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGG-----------GHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCc--ccccccceEEEEEEEE-CCEEEEEEEEECCCchh-----------hHHHH
Confidence            5899999999999999999987653211  2222333222222322 333  456789999532           12223


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH--------hcCCCCcHHHHHHHHHhhH---------HHHHhhcc-chhhhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------ANGGQPYTDEFLAELKRGA---------TELRDQQA-EVDSLKEYS  163 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~---------~~l~~~~~-~i~~is~~~  163 (231)
                      ...+..++++++|+|.++..+.....        ........+.+.++.+...         ..+....+ +++.+||++
T Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~~~~~SAkt  151 (171)
T d2ew1a1          72 QSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKE  151 (171)
T ss_dssp             GGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTT
T ss_pred             HHHHhccceEEEeeecccchhhhhhhhhhhhhcccccccccEEEEEeecccccccchhhhHHHHHHHhCCCEEEEEccCC
Confidence            34567899999999998533322221        1112222222223332110         12222222 567789999


Q ss_pred             HhhHHHHHHHHHH
Q 038053          164 KQEISKLMGQMQE  176 (231)
Q Consensus       164 ~~~i~~l~~~i~~  176 (231)
                      |.|+++++..+..
T Consensus       152 g~gV~e~f~~l~~  164 (171)
T d2ew1a1         152 SDNVEKLFLDLAC  164 (171)
T ss_dssp             CTTHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHH
Confidence            9999998765543

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.32  E-value=1.3e-13  Score=108.11  Aligned_cols=78  Identities=14%  Similarity=0.076  Sum_probs=57.3

Q ss_pred             CCCCCC-CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee----eEEeeCCcEE
Q 038053            1 MSSGMG-ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK----TTVLKDGQVV   75 (231)
Q Consensus         1 ~~~~~~-~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~----~~~~~~~~~~   75 (231)
                      +|++|+ .+++|+|++|++++|  .++||+|+||||||||+++|+|...+    ..|.+..+....    ...+ .....
T Consensus         7 vsf~Y~~~~~vL~~isl~i~~G--e~vaivG~sGsGKSTLl~ll~gl~~p----~~G~I~i~g~~i~~~~~~~~-r~~i~   79 (242)
T d1mv5a_           7 VDFAYDDSEQILRDISFEAQPN--SIIAFAGPSGGGKSTIFSLLERFYQP----TAGEITIDGQPIDNISLENW-RSQIG   79 (242)
T ss_dssp             EEECSSSSSCSEEEEEEEECTT--EEEEEECCTTSSHHHHHHHHTTSSCC----SBSCEEETTEESTTTSCSCC-TTTCC
T ss_pred             EEEECCCCCceeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHHhhCC----CCCEEEECCEEeccccHHHH-HhheE
Confidence            366784 467999999999999  99999999999999999999999884    344333322110    1111 45567


Q ss_pred             EEEeCCCCcC
Q 038053           76 NVIDTPGLFD   85 (231)
Q Consensus        76 ~l~Dtpg~~~   85 (231)
                      ++++.|.+++
T Consensus        80 ~v~Q~~~lf~   89 (242)
T d1mv5a_          80 FVSQDSAIMA   89 (242)
T ss_dssp             EECCSSCCCC
T ss_pred             EEccccccCC
Confidence            8888887664

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=6.3e-14  Score=109.42  Aligned_cols=86  Identities=14%  Similarity=0.022  Sum_probs=61.9

Q ss_pred             CCCCCCc----ccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeE-E-----eeC
Q 038053            2 SSGMGER----VIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTT-V-----LKD   71 (231)
Q Consensus         2 ~~~~~~~----~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~-~-----~~~   71 (231)
                      ++.|+..    .+++|+||++++|  ..++|+|+||||||||+++|+|...+    +.|.+......... .     ...
T Consensus         8 sk~y~~~~~~~~al~~vsl~i~~G--e~~~iiG~sGsGKSTLl~~i~Gl~~p----~sG~I~~~g~~i~~~~~~~~~~~r   81 (240)
T d3dhwc1           8 TKVFHQGTRTIQALNNVSLHVPAG--QIYGVIGASGAGKSTLIRCVNLLERP----TEGSVLVDGQELTTLSESELTKAR   81 (240)
T ss_dssp             EEEEECSSCEEEEEEEEEEEECSS--CEEEEEESTTSSHHHHHHHHTTSSCC----SEEEEEETTEEECTTCHHHHHHHH
T ss_pred             EEEeCCCCeeEEEeeceeEEEcCC--CEEEEECCCCCCHHHHHHHHcCCccc----cCCceEEcCeEeeeCChhhhhhhh
Confidence            5566543    5799999999999  99999999999999999999999884    33333332211100 0     001


Q ss_pred             CcEEEEEeCCCCcCCCCCchHH
Q 038053           72 GQVVNVIDTPGLFDSSAGSEFV   93 (231)
Q Consensus        72 ~~~~~l~Dtpg~~~~~~~~~~~   93 (231)
                      ....+++|.|++++..++.+++
T Consensus        82 r~ig~VfQ~~~l~~~~tv~eni  103 (240)
T d3dhwc1          82 RQIGMIFQHFNLLSSRTVFGNV  103 (240)
T ss_dssp             HHEEECCSSCCCCTTSBHHHHH
T ss_pred             ccccccccccccCCCccHHHHH
Confidence            3478899999999877766654

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.31  E-value=9.1e-13  Score=100.92  Aligned_cols=92  Identities=15%  Similarity=0.173  Sum_probs=66.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCC---ccccc------cC------CCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRK---AFKAS------AD------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSA   88 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~---~~~~~------~~------~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~   88 (231)
                      .+|+++|+.++|||||+++|+...   .....      .+      ..++|.+.......+ .+..+.++||||..+   
T Consensus         4 ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~-~~~~i~iiDtPGh~d---   79 (204)
T d2c78a3           4 VNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET-AKRHYSHVDCPGHAD---   79 (204)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC-SSCEEEEEECCCSGG---
T ss_pred             eEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEe-CCeEEEEEeCCCchh---
Confidence            689999999999999999997321   10000      00      115666666666667 888999999999775   


Q ss_pred             CchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH
Q 038053           89 GSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA  127 (231)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~  127 (231)
                              +...+...+..+|.+++|+|+..++..+...
T Consensus        80 --------f~~~~~~~~~~aD~avlVvda~~Gv~~qt~~  110 (204)
T d2c78a3          80 --------YIKNMITGAAQMDGAILVVSAADGPMPQTRE  110 (204)
T ss_dssp             --------GHHHHHHHHTTCSSEEEEEETTTCCCHHHHH
T ss_pred             --------hHHHHHHHHHHCCEEEEEEECCCCCcHHHHH
Confidence                    2222234457789999999999899998765

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.31  E-value=6.4e-13  Score=98.21  Aligned_cols=141  Identities=11%  Similarity=0.096  Sum_probs=76.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEee-CCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      .+|+++|.+|||||||++.+++......  ..+..+........... ....+.+.||||........           .
T Consensus         3 ~Ki~vvG~~~vGKTSli~~l~~~~~~~~--~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~-----------~   69 (166)
T d1g16a_           3 MKILLIGDSGVGKSCLLVRFVEDKFNPS--FITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTIT-----------T   69 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCCCC---------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCC-----------H
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCc--cCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHH-----------H
Confidence            5899999999999999999987653211  12222222222222221 22356689999964322111           1


Q ss_pred             hhcCCccEEEEEEECCCCCCHHHHH--------h-cCCCCcHHHHHHHHHh--------hHHHHHhhcc-chhhhhhhhH
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEEEA--------A-NGGQPYTDEFLAELKR--------GATELRDQQA-EVDSLKEYSK  164 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~--------~~~~l~~~~~-~i~~is~~~~  164 (231)
                      ..+..++++++|+|+++.-+.....        . ....+.+ .+.++.+.        ....+....+ +++.+|++++
T Consensus        70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i-~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  148 (166)
T d1g16a_          70 AYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLL-LVGNKSDMETRVVTADQGEALAKELGIPFIESSAKND  148 (166)
T ss_dssp             HHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEE-EEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTT
T ss_pred             HHHhcCCEEEEEEECCCccCHHHHHhhhhhhhccccCcceee-eecchhhhhhhhhhHHHHHHHHHhcCCeEEEECCCCC
Confidence            2346789999999998532222222        1 1111111 01111000        0012222222 6778899999


Q ss_pred             hhHHHHHHHHHHHH
Q 038053          165 QEISKLMGQMQESY  178 (231)
Q Consensus       165 ~~i~~l~~~i~~~~  178 (231)
                      .|+++++..+.+..
T Consensus       149 ~~v~e~f~~l~~~i  162 (166)
T d1g16a_         149 DNVNEIFFTLAKLI  162 (166)
T ss_dssp             BSHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH
Confidence            99999988877644

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.30  E-value=5e-12  Score=106.23  Aligned_cols=95  Identities=19%  Similarity=0.182  Sum_probs=57.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCccccccC---CCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHH
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKAFKASAD---SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVK   99 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~   99 (231)
                      +.+|+|+|++|||||||+|+|+|......+..   ..++|.+....  .......+.++||||+.......    .++..
T Consensus        56 ~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~--~~~~~~~~~l~DtPG~~~~~~~~----~~~~~  129 (400)
T d1tq4a_          56 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPY--KHPNIPNVVFWDLPGIGSTNFPP----DTYLE  129 (400)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEE--ECSSCTTEEEEECCCGGGSSCCH----HHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeee--eccCCCeEEEEeCCCcccccccH----HHHHH
Confidence            38899999999999999999999654322211   12234432222  22245567899999997644322    22222


Q ss_pred             HHhhhcCCccEEEEEEECCCCCCHHHHH
Q 038053          100 RIGLAKGGIHAVLVVFSVRSRFSQEEEA  127 (231)
Q Consensus       100 ~~~~~~~~~~~il~vvd~~~~~~~~~~~  127 (231)
                      .  .....+|.++++++.  +++..+..
T Consensus       130 ~--~~~~~~d~~l~~~~~--~~~~~d~~  153 (400)
T d1tq4a_         130 K--MKFYEYDFFIIISAT--RFKKNDID  153 (400)
T ss_dssp             H--TTGGGCSEEEEEESS--CCCHHHHH
T ss_pred             H--hhhhcceEEEEecCC--CCCHHHHH
Confidence            2  223567777777653  67777765

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.27  E-value=2.5e-12  Score=95.65  Aligned_cols=142  Identities=16%  Similarity=0.131  Sum_probs=74.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+++|.+|||||||+|.+++...........+.+...............+.+.||||...           .......
T Consensus         3 ~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~-----------~~~~~~~   71 (175)
T d1ky3a_           3 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQER-----------FQSLGVA   71 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC---------------------C
T ss_pred             EEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchh-----------hhhHHHH
Confidence            68999999999999999999875532111111112211111111111223567899999543           1122334


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH-------------hcCCCCcHHHHHHHHHh----------hHHHHHhhcc--chhh
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA-------------ANGGQPYTDEFLAELKR----------GATELRDQQA--EVDS  158 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~----------~~~~l~~~~~--~i~~  158 (231)
                      ....++++++++|+++..+.....             .....|++ .+.++.|.          ....+....+  +++.
T Consensus        72 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e  150 (175)
T d1ky3a_          72 FYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFV-ILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFL  150 (175)
T ss_dssp             CSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEE-EEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEE
T ss_pred             HhhccceEEEEeecccccccchhhhcchhhhhhhhhcccccCcEE-EEecccchhhhhcchhHHHHHHHHHHcCCCeEEE
Confidence            457889999999998543322211             11233443 22333321          0013333332  5677


Q ss_pred             hhhhhHhhHHHHHHHHHHH
Q 038053          159 LKEYSKQEISKLMGQMQES  177 (231)
Q Consensus       159 is~~~~~~i~~l~~~i~~~  177 (231)
                      +||++|.|+++++..+.+.
T Consensus       151 ~SA~~g~gv~e~f~~l~~~  169 (175)
T d1ky3a_         151 TSAKNAINVDTAFEEIARS  169 (175)
T ss_dssp             EBTTTTBSHHHHHHHHHHH
T ss_pred             EeCCCCcCHHHHHHHHHHH
Confidence            8999999999988877653

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=4e-12  Score=94.53  Aligned_cols=140  Identities=13%  Similarity=0.101  Sum_probs=78.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEe-eCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      .+|+++|.+|||||||+|.+++..-...  ..+............. .....+.+.||||...           +.....
T Consensus         6 ~KI~lvG~~~vGKTsll~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-----------~~~~~~   72 (174)
T d2bmea1           6 FKFLVIGNAGTGKSCLLHQFIEKKFKDD--SNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER-----------FRSVTR   72 (174)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSSCCTT--CCCCSEEEEEEEEEEETTEEEEEEEEEECCSGG-----------GHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcc--cccccccceeeEEEEecCcceeEEEEECCCchh-----------hhhhHH
Confidence            5899999999999999999886543111  1111111111111111 1234567899999543           112233


Q ss_pred             hhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhhH---------HHHHhhcc-chhhhhhhh
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRGA---------TELRDQQA-EVDSLKEYS  163 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~---------~~l~~~~~-~i~~is~~~  163 (231)
                      .....++++++++|+++.-+.....         .....|++ .+.++.+...         ..+....+ +++.+||++
T Consensus        73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-vv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~  151 (174)
T d2bmea1          73 SYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVII-LCGNKKDLDADREVTFLEASRFAQENELMFLETSALT  151 (174)
T ss_dssp             TTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEE-EEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTT
T ss_pred             HHhhhCCEEEEEEecccchhHHHHhhhhcccccccCCceEEE-EEEecccccchhchhhhHHHHHHHhCCCEEEEeeCCC
Confidence            4567899999999998432222211         12233333 2333333111         12222222 567789999


Q ss_pred             HhhHHHHHHHHHHH
Q 038053          164 KQEISKLMGQMQES  177 (231)
Q Consensus       164 ~~~i~~l~~~i~~~  177 (231)
                      |.|+++++..+.+.
T Consensus       152 ~~gi~e~f~~l~~~  165 (174)
T d2bmea1         152 GENVEEAFVQCARK  165 (174)
T ss_dssp             CTTHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHH
Confidence            99999988777664

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.25  E-value=3.4e-11  Score=91.09  Aligned_cols=140  Identities=16%  Similarity=0.105  Sum_probs=75.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEe-eCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      .+|+|+|.+|||||||++.+++...........+.+..  ...... .....+.++||||.......           ..
T Consensus         7 ~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~--~~~i~~~~~~~~l~i~Dt~G~e~~~~~-----------~~   73 (194)
T d2bcgy1           7 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFK--IKTVELDGKTVKLQIWDTAGQERFRTI-----------TS   73 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEE--EEEEEETTEEEEEEEECCTTTTTTTCC-----------CG
T ss_pred             EEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEE--EEEEEEeeEEEEEEEEECCCchhhHHH-----------HH
Confidence            58999999999999999998865532111112222221  112222 12345677999996542211           11


Q ss_pred             hhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhh------HH---HHH-hhccchhhhhhhh
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRG------AT---ELR-DQQAEVDSLKEYS  163 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~------~~---~l~-~~~~~i~~is~~~  163 (231)
                      ..+..+|++++|+|+++..+.....         .....|.+ .+.++.+..      ..   .+. ....+.+.+||++
T Consensus        74 ~~~~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~ii-lv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~  152 (194)
T d2bcgy1          74 SYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKL-LVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALD  152 (194)
T ss_dssp             GGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEE-EEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTT
T ss_pred             HHhccCCEEEEEEeCcchhhhhhHhhhhhhhhhcccCCceEE-EEEeccccccccchhHHHHhhhhhccCcceEEEecCc
Confidence            2347889999999998533332222         11111221 111211100      00   111 1112566789999


Q ss_pred             HhhHHHHHHHHHHH
Q 038053          164 KQEISKLMGQMQES  177 (231)
Q Consensus       164 ~~~i~~l~~~i~~~  177 (231)
                      |.|+++++..+.+.
T Consensus       153 g~gi~e~f~~l~~~  166 (194)
T d2bcgy1         153 STNVEDAFLTMARQ  166 (194)
T ss_dssp             CTTHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHH
Confidence            99999987776553

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=8.5e-12  Score=92.30  Aligned_cols=136  Identities=18%  Similarity=0.103  Sum_probs=72.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+++|.+|||||||++.+.+......    ..++.......... .+  ..+.+.|+||.....        .+   .
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~----~~~~~~~~~~~i~~-~~~~~~l~i~D~~g~e~~~--------~~---~   65 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGPE----AEAAGHTYDRSIVV-DGEEASLMVYDIWEQDGGR--------WL---P   65 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC-------------CEEEEEEEEE-TTEEEEEEEEECC---------------C---H
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCCc----CCeeeeeecceeec-cccccceeeeecccccccc--------ee---c
Confidence            5799999999999999999998754211    11111111111222 33  456689999964321        11   1


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH--------h--cCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------A--NGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKE  161 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~--~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~  161 (231)
                      ...+..+|++++|+|+++..+.....        .  ....|++ .+.++.|..         ...+....+ +.+.+||
T Consensus        66 ~~~~~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~~~~~pii-lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa  144 (168)
T d2gjsa1          66 GHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPII-LVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSA  144 (168)
T ss_dssp             HHHHTSCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCEE-EEEECTTCGGGCCSCHHHHHHHHHHHTSEEEECBT
T ss_pred             ccchhhhhhhceeccccccccccccccccchhhcccccccceEE-EeecccchhhhcchhHHHHHHHHHhcCCEEEEEeC
Confidence            22346789999999998543333322        1  1122332 222333310         012222222 5567899


Q ss_pred             hhHhhHHHHHHHHHH
Q 038053          162 YSKQEISKLMGQMQE  176 (231)
Q Consensus       162 ~~~~~i~~l~~~i~~  176 (231)
                      ++|.|+++++..+..
T Consensus       145 k~~~~v~~~f~~l~~  159 (168)
T d2gjsa1         145 ALHHNVQALFEGVVR  159 (168)
T ss_dssp             TTTBSHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHH
Confidence            999999998777654

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.23  E-value=1.3e-11  Score=90.43  Aligned_cols=136  Identities=14%  Similarity=0.086  Sum_probs=78.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+|||.+|||||||+|.+++......     ..|.......... ....+.+.|.++.....           .....
T Consensus         6 ~kI~ivG~~~vGKSSLi~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----------~~~~~   68 (169)
T d1upta_           6 MRILILGLDGAGKTTILYRLQVGEVVTT-----IPTIGFNVETVTY-KNLKFQVWDLGGLTSIR-----------PYWRC   68 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSSCCCC-----CCCSSEEEEEEEE-TTEEEEEEEECCCGGGG-----------GGGGG
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCcce-----ecccceeeeeecc-CceEEEEeecccccccc-----------ccchh
Confidence            7899999999999999999998765321     1222222222333 67777888888866421           11223


Q ss_pred             hcCCccEEEEEEECCCCCCHHHHH----------hcCCCCcHHHHHHHHHhh----HHHHHh---------hccchhhhh
Q 038053          104 AKGGIHAVLVVFSVRSRFSQEEEA----------ANGGQPYTDEFLAELKRG----ATELRD---------QQAEVDSLK  160 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~----~~~l~~---------~~~~i~~is  160 (231)
                      .....+.++++++..+........          .....++. .+.++.+..    ..++..         .-.+++++|
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S  147 (169)
T d1upta_          69 YYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILV-VFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTS  147 (169)
T ss_dssp             GCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEE-EEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECC
T ss_pred             hhhhhhhhhhhhhhhhcchhhhccchhhhhhhhhccccceEE-EEEeeccccccccHHHHHHHHHHHHHhcCCCEEEEEe
Confidence            346778999999987443333322          11111221 111111100    001111         111678899


Q ss_pred             hhhHhhHHHHHHHHHHH
Q 038053          161 EYSKQEISKLMGQMQES  177 (231)
Q Consensus       161 ~~~~~~i~~l~~~i~~~  177 (231)
                      |++|.|+++++..+.+.
T Consensus       148 A~~g~gv~e~~~~l~~~  164 (169)
T d1upta_         148 ATKGTGLDEAMEWLVET  164 (169)
T ss_dssp             TTTCTTHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHH
Confidence            99999999998887653

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.23  E-value=3.1e-12  Score=93.32  Aligned_cols=81  Identities=9%  Similarity=0.073  Sum_probs=52.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhh
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLA  104 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~  104 (231)
                      +|+|+|++|||||||+|.|++.......+     |.......... ......+.|+++.....           ......
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~~~~-----t~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----------~~~~~~   64 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLATLQP-----TWHPTSEELAI-GNIKFTTFDLGGHIQAR-----------RLWKDY   64 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCCCC-----CCSCEEEEECC-TTCCEEEEECCCSGGGG-----------GGGGGG
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCeeec-----eeeEeEEEecc-CCeeEEEEeeccchhhh-----------hhHhhh
Confidence            79999999999999999999976532221     22222222222 56667788888865421           112334


Q ss_pred             cCCccEEEEEEECCCCCC
Q 038053          105 KGGIHAVLVVFSVRSRFS  122 (231)
Q Consensus       105 ~~~~~~il~vvd~~~~~~  122 (231)
                      ...++.+++++|..+...
T Consensus        65 ~~~~~~~~~~~d~~~~~~   82 (166)
T d2qtvb1          65 FPEVNGIVFLVDAADPER   82 (166)
T ss_dssp             CTTCSEEEEEEETTCGGG
T ss_pred             hhheeeeeeeccccchhh
Confidence            467789999999875433

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=4.2e-12  Score=94.75  Aligned_cols=141  Identities=11%  Similarity=0.097  Sum_probs=76.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEe-eCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      .+|+++|.+|||||||+|.+++......  ..+..+.......... .....+.+.||||......        +.   .
T Consensus         8 iKi~vvG~~~vGKTsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~---~   74 (177)
T d1x3sa1           8 LKILIIGESGVGKSSLLLRFTDDTFDPE--LAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRT--------LT---P   74 (177)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTT--CCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCC--------SH---H
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCCCc--cccceeecceeEEEEEeccccEEEEEECCCchhhHH--------HH---H
Confidence            6899999999999999999987653211  1222222222222222 1234577899999754221        11   1


Q ss_pred             hhcCCccEEEEEEECCCCCCHHHHH-----h----cCCCCcHHHHHHHHHhh--------HHHHHhhcc-chhhhhhhhH
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEEEA-----A----NGGQPYTDEFLAELKRG--------ATELRDQQA-EVDSLKEYSK  164 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~~~-----~----~~~~~~~~~~~~~~~~~--------~~~l~~~~~-~i~~is~~~~  164 (231)
                      .....+|++++|+|+++..+.....     .    ......+..+.++.+..        ...+....+ +++.+||++|
T Consensus        75 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~v~~~~~~~~~~~~~~~~~e~Sa~tg  154 (177)
T d1x3sa1          75 SYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTC  154 (177)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTTC
T ss_pred             HHHhcCCEEEEEEECCCccccccchhhhhhhcccccccceeeEEEeeccccccccccHHHHHHHHHHCCCEEEEEeCCCC
Confidence            2236789999999988532222211     0    01111111111221100        012222222 6777899999


Q ss_pred             hhHHHHHHHHHHH
Q 038053          165 QEISKLMGQMQES  177 (231)
Q Consensus       165 ~~i~~l~~~i~~~  177 (231)
                      .|+++++..+.+.
T Consensus       155 ~gv~e~f~~l~~~  167 (177)
T d1x3sa1         155 DGVQCAFEELVEK  167 (177)
T ss_dssp             TTHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH
Confidence            9999988876553

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.23  E-value=7.5e-12  Score=92.16  Aligned_cols=139  Identities=17%  Similarity=0.115  Sum_probs=78.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeC--CcEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+++|.+|||||||+|.+++......  ..+............. .  ...+.+.||+|.........          
T Consensus         3 iKv~liG~~~vGKSsLi~rl~~~~~~~~--~~~ti~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~~~~~~----------   69 (164)
T d1z2aa1           3 IKMVVVGNGAVGKSSMIQRYCKGIFTKD--YKKTIGVDFLERQIQV-NDEDVRLMLWDTAGQEEFDAITK----------   69 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCCCCCC--SSCCCSSSEEEEEEEE-TTEEEEEEEECCTTGGGTTCCCH----------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcc--cccccccccceeeeee-cCceeeeeeeccCCccchhhhhh----------
Confidence            5899999999999999999886432111  1121111111111211 2  24567899999765432211          


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH--------hcCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA--------ANGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKEYS  163 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~~~  163 (231)
                       ..+..++++++|+|+++.-+.....        .....|.+ .+.++.|..         ...+....+ +++.+||++
T Consensus        70 -~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~ii-lVgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~  147 (164)
T d1z2aa1          70 -AYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTA-LVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKE  147 (164)
T ss_dssp             -HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEE-EEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTT
T ss_pred             -hhhccCceEEEEEeccchhhhhhcccccccccccCCCceEE-EeeccCCcccceeeeehhhHHHHHHcCCEEEEeccCC
Confidence             1236789999999998543322221        22233433 222333310         012222222 677789999


Q ss_pred             HhhHHHHHHHHHHH
Q 038053          164 KQEISKLMGQMQES  177 (231)
Q Consensus       164 ~~~i~~l~~~i~~~  177 (231)
                      |.|+++++..+.+.
T Consensus       148 g~~v~e~f~~l~~~  161 (164)
T d1z2aa1         148 DLNVSEVFKYLAEK  161 (164)
T ss_dssp             TBSSHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHH
Confidence            99999988776553

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.23  E-value=1.4e-12  Score=104.40  Aligned_cols=65  Identities=15%  Similarity=0.163  Sum_probs=51.0

Q ss_pred             CCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCc
Q 038053            5 MGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF   84 (231)
Q Consensus         5 ~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~   84 (231)
                      +++.++|+|++|++++|  .++||+|+||||||||+++|+|...+    ..|.+..          .++..++.+.|.++
T Consensus        46 ~~g~pvL~~isl~i~~G--e~vaivG~nGsGKSTLl~~i~Gl~~p----~~G~I~~----------~g~i~~v~Q~~~l~  109 (281)
T d1r0wa_          46 LVGNPVLKNINLNIEKG--EMLAITGSTGSGKTSLLMLILGELEA----SEGIIKH----------SGRVSFCSQFSWIM  109 (281)
T ss_dssp             HTTCEEEEEEEEEECTT--CEEEEEESTTSSHHHHHHHHHTSSCC----SEEEEEC----------CSCEEEECSSCCCC
T ss_pred             CCCCeEEeCeEEEEcCC--CEEEEECCCCChHHHHHHHHhCCCcC----CCcEEEE----------CCEEEEEecccccc
Confidence            46788999999999999  99999999999999999999999873    3332222          44556666666554


Q ss_pred             C
Q 038053           85 D   85 (231)
Q Consensus        85 ~   85 (231)
                      +
T Consensus       110 ~  110 (281)
T d1r0wa_         110 P  110 (281)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=1e-11  Score=93.24  Aligned_cols=142  Identities=17%  Similarity=0.051  Sum_probs=77.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEe-----------eCCcEEEEEeCCCCcCCCCCchH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVL-----------KDGQVVNVIDTPGLFDSSAGSEF   92 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-----------~~~~~~~l~Dtpg~~~~~~~~~~   92 (231)
                      .+|+|+|.+|||||||+|.+++......  ..+..+..........           .....+.+.||||..        
T Consensus         6 ~Ki~ivG~~~vGKTsLi~~l~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e--------   75 (186)
T d2f7sa1           6 IKLLALGDSGVGKTTFLYRYTDNKFNPK--FITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE--------   75 (186)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHCSCCCCE--EEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHH--------
T ss_pred             EEEEEECCCCcCHHHHHHHHhcCCCCCc--cCCcccceeeEEEEEEecccccccccccceEEeccccCCcch--------
Confidence            5899999999999999999997653111  0111111111111110           012346678888832        


Q ss_pred             HHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhh---------HHHHHhhcc
Q 038053           93 VGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRG---------ATELRDQQA  154 (231)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~---------~~~l~~~~~  154 (231)
                         ++.......+..+|++++|+|+++..+.....         .....+....+.++.+..         ...+....+
T Consensus        76 ---~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~  152 (186)
T d2f7sa1          76 ---RFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYG  152 (186)
T ss_dssp             ---HHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTT
T ss_pred             ---hhHHHHHHHHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHHHcC
Confidence               22222223357889999999998543333322         001111222233333210         012222222


Q ss_pred             -chhhhhhhhHhhHHHHHHHHHHHH
Q 038053          155 -EVDSLKEYSKQEISKLMGQMQESY  178 (231)
Q Consensus       155 -~i~~is~~~~~~i~~l~~~i~~~~  178 (231)
                       +.+.+||++|.|+++++..+.+..
T Consensus       153 ~~~~e~Sak~~~~i~e~f~~l~~~i  177 (186)
T d2f7sa1         153 IPYFETSAATGQNVEKAVETLLDLI  177 (186)
T ss_dssp             CCEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred             CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence             567789999999999988877754

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=8.7e-12  Score=91.97  Aligned_cols=138  Identities=12%  Similarity=0.144  Sum_probs=75.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCc--EEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+|+|.+|+|||||++.+++......  ..+..+.......... .+.  .+.+.|+||.....        .+..  
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~--------~~~~--   71 (166)
T d1z0fa1           5 FKYIIIGDMGVGKSCLLHQFTEKKFMAD--CPHTIGVEFGTRIIEV-SGQKIKLQIWDTAGQERFR--------AVTR--   71 (166)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCSS--CTTSCCCCEEEEEEEE-TTEEEEEEEEECTTGGGTC--------HHHH--
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCc--ccccccccceeEEEEE-CCEEEEEEEeccCCchhHH--------HHHH--
Confidence            5899999999999999999987653211  1222222222222222 333  67789999965421        1111  


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHh---------hHHHHHhhcc-chhhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKR---------GATELRDQQA-EVDSLKEY  162 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~---------~~~~l~~~~~-~i~~is~~  162 (231)
                       .....+|++++|+|+++.-+.....         .....|.+ .+.++.+.         +...+..... +.+.+||+
T Consensus        72 -~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~ii-lvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak  149 (166)
T d1z0fa1          72 -SYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVII-LIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAK  149 (166)
T ss_dssp             -HHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEE-EEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred             -HHhcCCcEEEEEeccCchHHHHHHHHHHHHHHhhccccceEE-EEcccccchhhcccHHHHHHHHHHHcCCEEEEEeCC
Confidence             1234679999999998432221111         11111221 11122210         0012222222 66779999


Q ss_pred             hHhhHHHHHHHHHH
Q 038053          163 SKQEISKLMGQMQE  176 (231)
Q Consensus       163 ~~~~i~~l~~~i~~  176 (231)
                      +|.|+++++..+.+
T Consensus       150 tg~~v~e~f~~i~~  163 (166)
T d1z0fa1         150 TGENVEDAFLEAAK  163 (166)
T ss_dssp             TCTTHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHH
Confidence            99999998777654

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.22  E-value=6.2e-11  Score=87.80  Aligned_cols=139  Identities=12%  Similarity=0.094  Sum_probs=79.9

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHH
Q 038053           19 SSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIV   98 (231)
Q Consensus        19 ~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~   98 (231)
                      ++.  .+|+|+|.+|||||||+|.|.+.......+ ..+.+.    ..... .+..+.+.|+++......          
T Consensus        13 ~k~--~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~-~~~~~~----~~~~~-~~~~~~~~d~~~~~~~~~----------   74 (177)
T d1zj6a1          13 HQE--HKVIIVGLDNAGKTTILYQFSMNEVVHTSP-TIGSNV----EEIVI-NNTRFLMWDIGGQESLRS----------   74 (177)
T ss_dssp             TSC--EEEEEEESTTSSHHHHHHHHHTTSCEEEEC-CSCSSC----EEEEE-TTEEEEEEECCC----CG----------
T ss_pred             CCe--EEEEEECCCCCCHHHHHHHHhcCCCCcccc-ccceeE----EEEee-cceEEEEecccccccccc----------
Confidence            444  899999999999999999999987543322 222221    11222 667888999888654221          


Q ss_pred             HHHhhhcCCccEEEEEEECCCCCCHHHHH----------hcCCCCcHHHHHHHHHhh----HHHHHh---------hccc
Q 038053           99 KRIGLAKGGIHAVLVVFSVRSRFSQEEEA----------ANGGQPYTDEFLAELKRG----ATELRD---------QQAE  155 (231)
Q Consensus        99 ~~~~~~~~~~~~il~vvd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~----~~~l~~---------~~~~  155 (231)
                       ........++.+++++|.++..+.....          .....|.+ .+.++.+..    ...+..         .-.+
T Consensus        75 -~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~i-iv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~  152 (177)
T d1zj6a1          75 -SWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLL-IFANKQDVKECMTVAEISQFLKLTSIKDHQWH  152 (177)
T ss_dssp             -GGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEE-EEEECTTSTTCCCHHHHHHHHTGGGCCSSCEE
T ss_pred             -chhhhhccceeeeeecccccccchhhhhhhhhhhhhcccccceEEE-EEEEcccccccCcHHHHHHHHHHHhhHhcCCE
Confidence             1112235678999999998544433322          11222322 122222200    001111         1116


Q ss_pred             hhhhhhhhHhhHHHHHHHHHHH
Q 038053          156 VDSLKEYSKQEISKLMGQMQES  177 (231)
Q Consensus       156 i~~is~~~~~~i~~l~~~i~~~  177 (231)
                      +..+||++|+|++++++.+.+.
T Consensus       153 ~~~~Sa~tg~Gi~e~~~~L~~~  174 (177)
T d1zj6a1         153 IQACCALTGEGLCQGLEWMMSR  174 (177)
T ss_dssp             EEECBTTTTBTHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHH
Confidence            7789999999999998887664

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.21  E-value=6.6e-12  Score=93.33  Aligned_cols=140  Identities=14%  Similarity=0.106  Sum_probs=58.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+++|.+|||||||++.+++......  ..+..+.......... .+  ..+.+.||||.....           ...
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~e~~~-----------~~~   72 (173)
T d2fu5c1           7 FKLLLIGDSGVGKTCVLFRFSEDAFNST--FISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFR-----------TIT   72 (173)
T ss_dssp             EEEEEECCCCC----------------C--HHHHHCEEEEEEEEEE-TTEEEEEEEEEC--------------------C
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCc--cCccccceEEEEEEEE-CCEEEEEEEEECCCchhhH-----------HHH
Confidence            5799999999999999999987653111  1111222222222333 33  355679999954311           112


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhhH------H---HH-Hhhccchhhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRGA------T---EL-RDQQAEVDSLKEY  162 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~------~---~l-~~~~~~i~~is~~  162 (231)
                      ...+..+|++++|+|++++.+.....         .....+.+ .+.++.+...      .   .+ ...--+.+.+|++
T Consensus        73 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ii-lv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~  151 (173)
T d2fu5c1          73 TAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKM-ILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAK  151 (173)
T ss_dssp             CTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEE-EEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC-
T ss_pred             HHhccCCCEEEEEEECCChhhHHHHHHHHHHhhhhccCCceEE-EEEecccchhhcccHHHHHHHHHHhcCCEEEEEeCC
Confidence            23357889999999998544333322         11111211 1111111000      0   11 1111256678999


Q ss_pred             hHhhHHHHHHHHHHHH
Q 038053          163 SKQEISKLMGQMQESY  178 (231)
Q Consensus       163 ~~~~i~~l~~~i~~~~  178 (231)
                      +|.|+++++..+.+..
T Consensus       152 ~g~gv~e~f~~l~~~i  167 (173)
T d2fu5c1         152 ANINVENAFFTLARDI  167 (173)
T ss_dssp             --CCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            9999999887776644

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=6.1e-13  Score=104.81  Aligned_cols=78  Identities=17%  Similarity=0.117  Sum_probs=55.9

Q ss_pred             CCCCCC---cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeee---EEeeCCcEE
Q 038053            2 SSGMGE---RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKT---TVLKDGQVV   75 (231)
Q Consensus         2 ~~~~~~---~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~~   75 (231)
                      |..|++   ..+|++++|++++|  ..++|||+||||||||+++|+|...+.    .|.+..+.....   .........
T Consensus        18 sf~Y~~~~~~~vL~~isl~i~~G--e~vaivG~sGsGKSTLl~li~gl~~p~----~G~I~i~g~~i~~~~~~~~r~~i~   91 (251)
T d1jj7a_          18 SFAYPNRPDVLVLQGLTFTLRPG--EVTALVGPNGSGKSTVAALLQNLYQPT----GGQLLLDGKPLPQYEHRYLHRQVA   91 (251)
T ss_dssp             EECCTTSTTCCSEEEEEEEECTT--CEEEEECSTTSSHHHHHHHHTTSSCCS----EEEEEETTEEGGGBCHHHHHHHEE
T ss_pred             EEECCCCCCCEeEeceEEEEcCC--CEEEEECCCCCcHHHHHHHHhcccCCC----cCEEEECCEecchhhhHHHHHHhh
Confidence            567754   35899999999999  999999999999999999999999843    333333221110   001134577


Q ss_pred             EEEeCCCCcC
Q 038053           76 NVIDTPGLFD   85 (231)
Q Consensus        76 ~l~Dtpg~~~   85 (231)
                      ++.+.|-+++
T Consensus        92 ~v~Q~~~lf~  101 (251)
T d1jj7a_          92 AVGQEPQVFG  101 (251)
T ss_dssp             EECSSCCCCS
T ss_pred             hccccccccC
Confidence            8888887765

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.20  E-value=3.7e-13  Score=105.37  Aligned_cols=78  Identities=18%  Similarity=0.099  Sum_probs=55.6

Q ss_pred             CCCC--CCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee---eEEeeCCcEEE
Q 038053            2 SSGM--GERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK---TTVLKDGQVVN   76 (231)
Q Consensus         2 ~~~~--~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~   76 (231)
                      |.+|  +..++|+++||++++|  .+|||+|+||||||||+++|+|...+..    |.+..+....   ..........+
T Consensus         8 sf~Y~~~~~~vL~~isl~i~~G--e~vaIvG~sGsGKSTLl~ll~gl~~p~~----G~I~i~g~~i~~~~~~~lr~~i~~   81 (241)
T d2pmka1           8 RFRYKPDSPVILDNINLSIKQG--EVIGIVGRSGSGKSTLTKLIQRFYIPEN----GQVLIDGHDLALADPNWLRRQVGV   81 (241)
T ss_dssp             EEESSTTSCEEEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHTTSSCCSE----EEEEETTEETTTSCHHHHHHHEEE
T ss_pred             EEEeCCCCcceEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHhcCCCCC----CEEEECCEEecccchhhhhceEEE
Confidence            5567  4567899999999999  9999999999999999999999987433    3333221110   00001345778


Q ss_pred             EEeCCCCcC
Q 038053           77 VIDTPGLFD   85 (231)
Q Consensus        77 l~Dtpg~~~   85 (231)
                      +++.|-+++
T Consensus        82 v~Q~~~lf~   90 (241)
T d2pmka1          82 VLQDNVLLN   90 (241)
T ss_dssp             ECSSCCCTT
T ss_pred             EecccccCC
Confidence            888887665

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=2.7e-12  Score=95.44  Aligned_cols=140  Identities=9%  Similarity=0.056  Sum_probs=77.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEe-eCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      .+|+++|.+|||||||++.+++......  ..+..+.......... .....+.+.|++|........           .
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~-----------~   70 (173)
T d2a5ja1           4 FKYIIIGDTGVGKSCLLLQFTDKRFQPV--HDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSIT-----------R   70 (173)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCCC-------CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCC-----------H
T ss_pred             EEEEEECCCCcCHHHHHHHHhcCCCCCC--cccceeeccceeeeeeeeeEEEEEeecccCccchhhHH-----------H
Confidence            5799999999999999999887653221  1122222222222222 123467789999976533211           1


Q ss_pred             hhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhhhh
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKEYS  163 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~~~  163 (231)
                      .....+|++++++|+++.-+-....         .....|++ .+.++.|..         ...+..... +...+||++
T Consensus        71 ~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~pii-lv~nK~D~~~~~~~~~~~~~~~a~~~~~~~~e~Sa~t  149 (173)
T d2a5ja1          71 SYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIM-LIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKT  149 (173)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEE-EEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTT
T ss_pred             HHhhccCEEEEEEeecChHHHHhHHHHHHHHHHhCCCCCeEE-EEecCCchhhhhhhHHHHHHHHHHHcCCEEEEecCCC
Confidence            1235679999999998533322221         11222332 222332210         012222222 667799999


Q ss_pred             HhhHHHHHHHHHHH
Q 038053          164 KQEISKLMGQMQES  177 (231)
Q Consensus       164 ~~~i~~l~~~i~~~  177 (231)
                      |.|+++++..+.+.
T Consensus       150 g~~V~e~f~~i~~~  163 (173)
T d2a5ja1         150 ACNVEEAFINTAKE  163 (173)
T ss_dssp             CTTHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHH
Confidence            99999987776663

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=7.1e-12  Score=93.19  Aligned_cols=140  Identities=18%  Similarity=0.191  Sum_probs=79.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+|+|.+|||||||++.+++..-.   ....++..+........ .+  ..+.+.|++|........       ..  
T Consensus         7 ~Kv~lvG~~~vGKTsLi~r~~~~~f~---~~~~~t~~~~~~~~~~~-~~~~~~l~~~d~~g~~~~~~~~-------~~--   73 (173)
T d2fn4a1           7 HKLVVVGGGGVGKSALTIQFIQSYFV---SDYDPTIEDSYTKICSV-DGIPARLDILDTAGQEEFGAMR-------EQ--   73 (173)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSSCC---SSCCTTCCEEEEEEEEE-TTEEEEEEEEECCCTTTTSCCH-------HH--
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCC---cccccccccceeeEecc-CCeeeeeecccccccccccccc-------ch--
Confidence            68999999999999999998865431   11222222222222222 33  356679999977533211       11  


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH----------hcCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA----------ANGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKE  161 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~  161 (231)
                        .+..+|++++|+|+++..+.....          .....|++ .+.++.|..         ...+....+ +.+.+||
T Consensus        74 --~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i-lvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa  150 (173)
T d2fn4a1          74 --YMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVV-LVGNKADLESQRQVPRSEASAFGASHHVAYFEASA  150 (173)
T ss_dssp             --HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEE-EEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBT
T ss_pred             --hhccceeeeeecccccccccchhhhhhHHHHHHhccCCCceE-EEEEeechhhccccchhhhhHHHHhcCCEEEEEeC
Confidence              123469999999998543333222          12233433 223333311         012222222 5566899


Q ss_pred             hhHhhHHHHHHHHHHHHH
Q 038053          162 YSKQEISKLMGQMQESYE  179 (231)
Q Consensus       162 ~~~~~i~~l~~~i~~~~~  179 (231)
                      ++|.|+++++..+.+...
T Consensus       151 k~g~gv~e~f~~l~~~i~  168 (173)
T d2fn4a1         151 KLRLNVDEAFEQLVRAVR  168 (173)
T ss_dssp             TTTBSHHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHH
Confidence            999999999888877543

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=8e-11  Score=86.98  Aligned_cols=140  Identities=15%  Similarity=0.115  Sum_probs=73.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCc--EEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+++|.+|||||||++.+++..-... ................. .+.  .+.+.||||....           ....
T Consensus         7 fKi~vvG~~~vGKTsli~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~l~i~Dt~G~e~~-----------~~~~   73 (170)
T d2g6ba1           7 FKVMLVGDSGVGKTCLLVRFKDGAFLAG-TFISTVGIDFRNKVLDV-DGVKVKLQMWDTAGQERF-----------RSVT   73 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCCC-CCCCCCSCEEEEEEEEE-TTEEEEEEEEECCCC------------------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcc-cccceeeeeeEEEEEEe-cCcEEEEEEEECCCchhh-----------HHHH
Confidence            6899999999999999998876542111 11111112222222222 333  5678999996531           1112


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHh---------hHHHHHhhcc-chhhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKR---------GATELRDQQA-EVDSLKEY  162 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~---------~~~~l~~~~~-~i~~is~~  162 (231)
                      ......+|++++++|+++.-+.....         .....+.+ .+.++.+.         +...+....+ +++.+|++
T Consensus        74 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ii-lv~~k~d~~~~~~v~~~~~~~~~~~~~~~~~e~Sak  152 (170)
T d2g6ba1          74 HAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALM-LLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAK  152 (170)
T ss_dssp             -CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEE-EEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTT
T ss_pred             HHhhcCCceeEEEecCCcccchhhhhhhhhhhhhccCCCceEE-EEEeeechhhcccccHHHHHHHHHHcCCEEEEEeCC
Confidence            23446789999999998433222221         11111221 11111110         0012222222 67778999


Q ss_pred             hHhhHHHHHHHHHHH
Q 038053          163 SKQEISKLMGQMQES  177 (231)
Q Consensus       163 ~~~~i~~l~~~i~~~  177 (231)
                      +|.|+++++..+.+.
T Consensus       153 ~g~gi~e~f~~l~~~  167 (170)
T d2g6ba1         153 TGLNVDLAFTAIAKE  167 (170)
T ss_dssp             TCTTHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHH
Confidence            999999988877653

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=1.9e-11  Score=89.77  Aligned_cols=140  Identities=12%  Similarity=0.048  Sum_probs=78.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEe-eCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      .+|+++|.+|||||||+|.+++......  ..++.+.......... .....+.+.|++|.....        ..   ..
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~--------~~---~~   67 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNT--YQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFR--------SL---IP   67 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSS--CCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGG--------GG---HH
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCc--cccceeeeccceeeccCCCceeeeecccCCcchhc--------cc---hH
Confidence            3799999999999999999987653211  1222222222222222 123456789999965421        11   12


Q ss_pred             hhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHh---------hHHHHHhhcc-chhhhhhhh
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKR---------GATELRDQQA-EVDSLKEYS  163 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~---------~~~~l~~~~~-~i~~is~~~  163 (231)
                      ..+..++++++++|.++..+.....         .....|++ .+.++.|.         ....+....+ +.+.+||++
T Consensus        68 ~~~~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~~~~~~ii-lvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk~  146 (164)
T d1yzqa1          68 SYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIM-LVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKA  146 (164)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEE-EEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTT
T ss_pred             HHhhccceEEEeeccccccchhhhHhhHHHHHHhcCCCceEE-EEecccchhhhhhhhHHHHHHHHHHcCCEEEEecCCC
Confidence            2346789999999998543332222         11122222 12222221         0012222222 567789999


Q ss_pred             HhhHHHHHHHHHHH
Q 038053          164 KQEISKLMGQMQES  177 (231)
Q Consensus       164 ~~~i~~l~~~i~~~  177 (231)
                      |.|+++++..+...
T Consensus       147 g~~v~e~f~~i~~~  160 (164)
T d1yzqa1         147 GYNVKQLFRRVAAA  160 (164)
T ss_dssp             CTTHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHh
Confidence            99999999887663

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=3e-11  Score=89.01  Aligned_cols=139  Identities=17%  Similarity=0.181  Sum_probs=77.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+++|.+|||||||+|.+++..-.    .....|............+  ..+.+.|++|....        ....   
T Consensus         4 ~Ki~viG~~~vGKTsli~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~--------~~~~---   68 (166)
T d1ctqa_           4 YKLVVVGAGGVGKSALTIQLIQNHFV----DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY--------SAMR---   68 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCCC----CSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGG--------HHHH---
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCC----CccCCccceeeccceeeeceeeeeeeeeccCcccc--------ccch---
Confidence            68999999999999999999886531    1212222211111111122  34567888886641        1111   


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH----------hcCCCCcHHHHHHHHHh--------hHHHHHhhcc-chhhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA----------ANGGQPYTDEFLAELKR--------GATELRDQQA-EVDSLKEY  162 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~--------~~~~l~~~~~-~i~~is~~  162 (231)
                      ...+..++++++|+|.++..+.+...          .....|++ .+.++.+.        ....+....+ +.+.+||+
T Consensus        69 ~~~~~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~e~Sak  147 (166)
T d1ctqa_          69 DQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV-LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAK  147 (166)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEE-EEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTT
T ss_pred             hhhhhcccccceeecccccccHHHHHHHHHHHHHhcCCCCCeEE-EEecccccccccccHHHHHHHHHHhCCeEEEEcCC
Confidence            12234568999999998543332222          11223332 12222221        0012322222 66778999


Q ss_pred             hHhhHHHHHHHHHHHH
Q 038053          163 SKQEISKLMGQMQESY  178 (231)
Q Consensus       163 ~~~~i~~l~~~i~~~~  178 (231)
                      +|.|+++++..+.+..
T Consensus       148 ~g~gi~e~f~~i~~~i  163 (166)
T d1ctqa_         148 TRQGVEDAFYTLVREI  163 (166)
T ss_dssp             TCTTHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHH
Confidence            9999999988876543

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=1e-10  Score=86.38  Aligned_cols=137  Identities=19%  Similarity=0.166  Sum_probs=75.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCc--EEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+++|.+|||||||++.+++..-.    .....|............+.  .+.+.|++|.....        ...   
T Consensus         3 ~Ki~viG~~~vGKTsLi~r~~~~~f~----~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~--------~~~---   67 (171)
T d2erxa1           3 YRVAVFGAGGVGKSSLVLRFVKGTFR----ESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFP--------AMQ---   67 (171)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTCCCC----SSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCH--------HHH---
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCC----CccCcceeeccccceeeccccceecccccccccccc--------ccc---
Confidence            68999999999999999999886531    11112222221111122343  45679999976521        111   


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH-----------hcCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA-----------ANGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLK  160 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is  160 (231)
                      ...+..+|++++|+|+++.-+.....           .....|++ .+.++.|..         ...+....+ +.+.+|
T Consensus        68 ~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~pii-lVgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~S  146 (171)
T d2erxa1          68 RLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIM-LVGNKCDESPSREVQSSEAEALARTWKCAFMETS  146 (171)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEE-EEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECB
T ss_pred             cccccceeEEEEEeecccccchhcccchhhhhhhhhccCCCCcEE-EEeecccccccccccHHHHHHHHHHcCCeEEEEc
Confidence            11234569999999998432221111           11223333 222332211         012222222 567789


Q ss_pred             hhhHhhHHHHHHHHHH
Q 038053          161 EYSKQEISKLMGQMQE  176 (231)
Q Consensus       161 ~~~~~~i~~l~~~i~~  176 (231)
                      |++|.|+++++..+..
T Consensus       147 ak~~~~v~e~f~~l~~  162 (171)
T d2erxa1         147 AKLNHNVKELFQELLN  162 (171)
T ss_dssp             TTTTBSHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHH
Confidence            9999999999877654

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.16  E-value=1.3e-12  Score=102.95  Aligned_cols=77  Identities=21%  Similarity=0.174  Sum_probs=55.2

Q ss_pred             CCCCCC--cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee----eEEeeCCcEE
Q 038053            2 SSGMGE--RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK----TTVLKDGQVV   75 (231)
Q Consensus         2 ~~~~~~--~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~----~~~~~~~~~~   75 (231)
                      +++|+.  .++|+++||.+++|  .++||||+||||||||+++|+|...+.    .|.+..+....    ...+ .....
T Consensus        20 sf~Y~~~~~~~L~~isl~i~~G--e~iaivG~sGsGKSTLl~ll~gl~~p~----~G~I~i~g~~i~~~~~~~~-r~~i~   92 (253)
T d3b60a1          20 TFTYPGREVPALRNINLKIPAG--KTVALVGRSGSGKSTIASLITRFYDID----EGHILMDGHDLREYTLASL-RNQVA   92 (253)
T ss_dssp             EECSSSSSCCSEEEEEEEECTT--CEEEEEECTTSSHHHHHHHHTTTTCCS----EEEEEETTEETTTBCHHHH-HHTEE
T ss_pred             EEEeCCCCCceeeceEEEEcCC--CEEEEECCCCChHHHHHHHHhcccCCC----ccEEEECCcccchhhhhhh-hheEE
Confidence            567753  46899999999999  999999999999999999999998743    33333221110    0111 24567


Q ss_pred             EEEeCCCCcC
Q 038053           76 NVIDTPGLFD   85 (231)
Q Consensus        76 ~l~Dtpg~~~   85 (231)
                      ++++.|.++.
T Consensus        93 ~v~Q~~~l~~  102 (253)
T d3b60a1          93 LVSQNVHLFN  102 (253)
T ss_dssp             EECSSCCCCS
T ss_pred             EEeeccccCC
Confidence            7888887765

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=5e-11  Score=87.82  Aligned_cols=136  Identities=18%  Similarity=0.184  Sum_probs=76.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceee-eeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTC-EMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKR  100 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~-~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~  100 (231)
                      .+|+|+|.+|||||||+|.+++..-.    .....|... ....... .+  ..+.+.|++|.....        .... 
T Consensus         4 ~Ki~lvG~~~vGKTsLi~r~~~~~f~----~~~~~t~~~~~~~~~~~-~~~~~~l~~~d~~g~~~~~--------~~~~-   69 (167)
T d1kaoa_           4 YKVVVLGSGGVGKSALTVQFVTGTFI----EKYDPTIEDFYRKEIEV-DSSPSVLEILDTAGTEQFA--------SMRD-   69 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCC----SCCCTTCCEEEEEEEEE-TTEEEEEEEEECCCTTCCH--------HHHH-
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCC----CccCCceeeeeeeeeec-CcceEeeccccCCCccccc--------cchH-
Confidence            78999999999999999999876531    111112211 1111111 32  356679999965411        1111 


Q ss_pred             HhhhcCCccEEEEEEECCCCCCHHHHH----------hcCCCCcHHHHHHHHHhhH---------HHHHhhcc-chhhhh
Q 038053          101 IGLAKGGIHAVLVVFSVRSRFSQEEEA----------ANGGQPYTDEFLAELKRGA---------TELRDQQA-EVDSLK  160 (231)
Q Consensus       101 ~~~~~~~~~~il~vvd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~---------~~l~~~~~-~i~~is  160 (231)
                        .....+|++++++|.++.-+.....          .....|++ .+.++.|...         ..+....+ +.+.+|
T Consensus        70 --~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-lvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S  146 (167)
T d1kaoa_          70 --LYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVI-LVGNKVDLESEREVSSSEGRALAEEWGCPFMETS  146 (167)
T ss_dssp             --HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEE-EEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEEC
T ss_pred             --HHhhcccceeeeeeecchhhhhhhhchhhhhhhhccCCCCCEE-EEEEccchhhcccchHHHHHHHHHHcCCeEEEEC
Confidence              1224569999999998543333322          11223333 2333433110         12222222 567789


Q ss_pred             hhhHhhHHHHHHHHHH
Q 038053          161 EYSKQEISKLMGQMQE  176 (231)
Q Consensus       161 ~~~~~~i~~l~~~i~~  176 (231)
                      |++|.|+++++..+.+
T Consensus       147 ak~g~~i~e~f~~i~~  162 (167)
T d1kaoa_         147 AKSKTMVDELFAEIVR  162 (167)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHH
Confidence            9999999998877654

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.15  E-value=9e-13  Score=103.93  Aligned_cols=78  Identities=23%  Similarity=0.149  Sum_probs=56.2

Q ss_pred             CCCCCC--cccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeee----eeEEeeCCcEE
Q 038053            2 SSGMGE--RVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEM----KTTVLKDGQVV   75 (231)
Q Consensus         2 ~~~~~~--~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~----~~~~~~~~~~~   75 (231)
                      +++|++  .++|++++|++++|  .+++|+|+||||||||+++|+|...+..    |.+..+...    ....+ .....
T Consensus        23 sf~Y~~~~~~vL~~isl~i~~G--e~vaivG~sGsGKSTLl~ll~gl~~p~~----G~I~i~g~~i~~~~~~~l-r~~i~   95 (255)
T d2hyda1          23 SFQYNDNEAPILKDINLSIEKG--ETVAFVGMSGGGKSTLINLIPRFYDVTS----GQILIDGHNIKDFLTGSL-RNQIG   95 (255)
T ss_dssp             EECSCSSSCCSEEEEEEEECTT--CEEEEECSTTSSHHHHHTTTTTSSCCSE----EEEEETTEEGGGSCHHHH-HHTEE
T ss_pred             EEEeCCCCCcceeceEEEEcCC--CEEEEECCCCCcHHHHHHHHHhcCCccc----cccccCCEEcccCCHHHh-hheee
Confidence            566754  57999999999999  9999999999999999999999988433    323222111    00111 34677


Q ss_pred             EEEeCCCCcCC
Q 038053           76 NVIDTPGLFDS   86 (231)
Q Consensus        76 ~l~Dtpg~~~~   86 (231)
                      ++.+.|-+++.
T Consensus        96 ~v~Q~~~lf~~  106 (255)
T d2hyda1          96 LVQQDNILFSD  106 (255)
T ss_dssp             EECSSCCCCSS
T ss_pred             eeeccccCCCC
Confidence            88888877653

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=99.15  E-value=3e-11  Score=96.40  Aligned_cols=63  Identities=24%  Similarity=0.379  Sum_probs=40.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCch
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSE   91 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~   91 (231)
                      .+|++||.||||||||+|+|.|.....++ ..+|+|+..+...    .+..++++||||+.......+
T Consensus       113 ~~v~vvG~PNvGKSsliN~L~~~~~~~~~-~~pG~Tr~~~~i~----~~~~~~l~DTPGi~~p~~~~~  175 (273)
T d1puja_         113 IRALIIGIPNVGKSTLINRLAKKNIAKTG-DRPGITTSQQWVK----VGKELELLDTPGILWPKFEDE  175 (273)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEE----ETTTEEEEECCCCCCSCCCCH
T ss_pred             eEEEEEecCccchhhhhhhhhccceEEEC-CcccccccceEEE----CCCCeEEecCCCccccCCccH
Confidence            78999999999999999999999887775 6788887654321    356689999999875444433

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.1e-10  Score=85.91  Aligned_cols=140  Identities=12%  Similarity=0.031  Sum_probs=75.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEe-eCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      .+|+|+|.+|||||||++.+++..-...  ..+............. .....+.+.|++|.....           ....
T Consensus         4 fKivlvG~~~vGKTsLi~r~~~~~f~~~--~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~-----------~~~~   70 (167)
T d1z08a1           4 FKVVLLGEGCVGKTSLVLRYCENKFNDK--HITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFH-----------ALGP   70 (167)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHCCCCSS--CCCCCSCEEEEEEEESSSCEEEEEEEECCCC------------------C
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcc--cccccccchheeeeccCCccceeeeeccCCcceec-----------ccch
Confidence            5899999999999999999886543111  1111111111112222 123466789999965421           1123


Q ss_pred             hhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhhhh
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKEYS  163 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~~~  163 (231)
                      ..+..+|++++|+|++++-+-....         .....+.+ .+.++.+..         ...+....+ +.+.+||++
T Consensus        71 ~~~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~i-lvgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sak~  149 (167)
T d1z08a1          71 IYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLC-IVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQ  149 (167)
T ss_dssp             CSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEE-EEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTT
T ss_pred             hhccCCceeEEEEeCCchhHHHhhhhhhhhccccccccccee-eeccccccccccccchHHHHHHHHHcCCeEEEEecCC
Confidence            3457889999999998543322222         11111111 112222210         012222222 566789999


Q ss_pred             HhhHHHHHHHHHHH
Q 038053          164 KQEISKLMGQMQES  177 (231)
Q Consensus       164 ~~~i~~l~~~i~~~  177 (231)
                      |.|+++++..+.+.
T Consensus       150 ~~~v~e~F~~l~~~  163 (167)
T d1z08a1         150 NKGIEELFLDLCKR  163 (167)
T ss_dssp             TBSHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHH
Confidence            99999998876653

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.5e-11  Score=91.01  Aligned_cols=139  Identities=15%  Similarity=0.134  Sum_probs=76.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEe-eCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      .+|+++|.+|||||||++.+++......  ..+............. .....+.+.|++|.....        .+   ..
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~~~f~~~--~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~--------~~---~~   73 (170)
T d1r2qa_           7 FKLVLLGESAVGKSSLVLRFVKGQFHEF--QESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYH--------SL---AP   73 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTT--CCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG--------GG---HH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcc--cccccccccccceeeccceEEEEEeccCCCchhhh--------hh---HH
Confidence            6899999999999999999986543111  1111111111111111 012456788999965421        11   11


Q ss_pred             hhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhhhh
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKEYS  163 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~~~  163 (231)
                      ..+..++.+++++|.++.-+.....         .....|++ .+.++.+..         ...+..... +.+.+||++
T Consensus        74 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~ii-lvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SAk~  152 (170)
T d1r2qa_          74 MYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIA-LSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKT  152 (170)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEE-EEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTT
T ss_pred             HHhhCcceEEEEeccchhhHHHHHHHHhhhhhhccCCCceEE-eecccccccccccccHHHHHHHHHhcCCEEEEeeCCC
Confidence            2346789999999998433322222         11222222 222333210         012222222 677799999


Q ss_pred             HhhHHHHHHHHHH
Q 038053          164 KQEISKLMGQMQE  176 (231)
Q Consensus       164 ~~~i~~l~~~i~~  176 (231)
                      |.|+++++..+.+
T Consensus       153 g~~V~e~f~~l~~  165 (170)
T d1r2qa_         153 SMNVNEIFMAIAK  165 (170)
T ss_dssp             CTTHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHH
Confidence            9999999887754

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.15  E-value=1.9e-11  Score=93.07  Aligned_cols=81  Identities=12%  Similarity=0.223  Sum_probs=56.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      ++|+|+|++|||||||+|.|++...      .+++|+......... .+..+.++|+||.....       ..+...+..
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~~~------~~~tt~~~~~~~~~~-~~~~~~l~D~~g~~~~~-------~~~~~~~~~   69 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTDSV------RPTVVSQEPLSAADY-DGSGVTLVDFPGHVKLR-------YKLSDYLKT   69 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSSC------CCBCCCSSCEEETTG-GGSSCEEEECCCCGGGT-------HHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC------CCeEEecceEEEEEe-CCeEEEEEecccccchh-------hHHHHHHHH
Confidence            5899999999999999999998764      233444433333333 56778899999976421       223333444


Q ss_pred             hcCCccEEEEEEECC
Q 038053          104 AKGGIHAVLVVFSVR  118 (231)
Q Consensus       104 ~~~~~~~il~vvd~~  118 (231)
                      .....+.+++++|..
T Consensus        70 ~~~~~~~~i~~vd~~   84 (209)
T d1nrjb_          70 RAKFVKGLIFMVDST   84 (209)
T ss_dssp             HGGGEEEEEEEEETT
T ss_pred             HhhhccccceEEEEe
Confidence            456678999999986

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.14  E-value=3.9e-11  Score=89.90  Aligned_cols=140  Identities=14%  Similarity=0.124  Sum_probs=76.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEe-eCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      .+|+++|.+|||||||+|.+++......-..+.+.+.  ....... .....+.+.|+||........           .
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~--~~~~~~~~~~~~~~~~~d~~g~~~~~~~~-----------~   69 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADF--LTKEVMVDDRLVTMQIWDTAGQERFQSLG-----------V   69 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEE--EEEEEESSSCEEEEEEEEECSSGGGSCSC-----------C
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceee--eeeeeeeCCceEEEEeeecCCcccccccc-----------c
Confidence            5899999999999999999987543111011111111  1111111 123467789999965432211           2


Q ss_pred             hhcCCccEEEEEEECCCCCCHHHHH---------h----cCCCCcHHHHHHHHHhhH--------HHHHhhc--cchhhh
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEEEA---------A----NGGQPYTDEFLAELKRGA--------TELRDQQ--AEVDSL  159 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~~~---------~----~~~~~~~~~~~~~~~~~~--------~~l~~~~--~~i~~i  159 (231)
                      .....+|++++++|.++..+.....         .    ....|++ .+.++.|...        ..+....  -+.+.+
T Consensus        70 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~i-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~  148 (184)
T d1vg8a_          70 AFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV-VLGNKIDLENRQVATKRAQAWCYSKNNIPYFET  148 (184)
T ss_dssp             GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEE-EEEECTTSSCCCSCHHHHHHHHHHTTSCCEEEC
T ss_pred             ccccCccEEEEeecccchhhhhcchhhHHHHHHHhccccccCCCEE-EEEEeecccccchhHHHHHHHHHHhcCCeEEEE
Confidence            2346789999999997432222111         0    1112332 2223333100        1121111  156678


Q ss_pred             hhhhHhhHHHHHHHHHHH
Q 038053          160 KEYSKQEISKLMGQMQES  177 (231)
Q Consensus       160 s~~~~~~i~~l~~~i~~~  177 (231)
                      ||++|.|+++++..+.+.
T Consensus       149 Sak~~~gI~e~f~~l~~~  166 (184)
T d1vg8a_         149 SAKEAINVEQAFQTIARN  166 (184)
T ss_dssp             BTTTTBSHHHHHHHHHHH
T ss_pred             cCCCCcCHHHHHHHHHHH
Confidence            999999999988876553

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=4.1e-11  Score=89.06  Aligned_cols=139  Identities=14%  Similarity=0.128  Sum_probs=76.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+++|.+|||||||+|.+++......  ..++.+.......... .+  ..+.+.|+||-.......           
T Consensus         5 ~Ki~vvG~~~vGKTsLi~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~i~d~~g~e~~~~~~-----------   70 (175)
T d2f9la1           5 FKVVLIGDSGVGKSNLLSRFTRNEFNLE--SKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRRIT-----------   70 (175)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCCC-----CCCSCEEEEEEEEE-TTEEEEEEEEECSSGGGTTCCC-----------
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCc--ccccccceeeeEEEEE-CCEEEEEEecccCCcHHHHHHH-----------
Confidence            5899999999999999999887543211  1122222222222222 33  367789999964322111           


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhhH---------HHHH-hhccchhhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRGA---------TELR-DQQAEVDSLKEY  162 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~---------~~l~-~~~~~i~~is~~  162 (231)
                      ...+..++++++|+|.++.-+.....         .....|++ .+.++.|...         .... ....+++.+|++
T Consensus        71 ~~~~~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~~~~pii-lvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~  149 (175)
T d2f9la1          71 SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM-LVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSAL  149 (175)
T ss_dssp             HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEE-EEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred             HHHhhccCeEEEEEECCCcccchhHHHHHHHHHHhcCCCCcEE-EEEeeecccccccchHHHHHHhhcccCceEEEEecC
Confidence            11236789999999998532222211         11222332 2223332100         0111 112267778999


Q ss_pred             hHhhHHHHHHHHHHH
Q 038053          163 SKQEISKLMGQMQES  177 (231)
Q Consensus       163 ~~~~i~~l~~~i~~~  177 (231)
                      +|.|+++++..+...
T Consensus       150 ~g~~i~e~f~~l~~~  164 (175)
T d2f9la1         150 DSTNVEEAFKNILTE  164 (175)
T ss_dssp             TCTTHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHH
Confidence            999999987776654

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=7.9e-10  Score=81.17  Aligned_cols=136  Identities=18%  Similarity=0.117  Sum_probs=77.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKR  100 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~  100 (231)
                      .+|+|+|.+|||||||++.+++..-    ......|...... .... .+  ..+.+.||+|........          
T Consensus         5 ~Kv~liG~~~vGKTsLl~~~~~~~f----~~~~~~t~~~~~~~~~~~-~~~~~~l~i~d~~g~~~~~~~~----------   69 (167)
T d1xtqa1           5 RKIAILGYRSVGKSSLTIQFVEGQF----VDSYDPTIENTFTKLITV-NGQEYHLQLVDTAGQDEYSIFP----------   69 (167)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCC----CSCCCSSCCEEEEEEEEE-TTEEEEEEEEECCCCCTTCCCC----------
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCC----CcccCcceecccceEEec-CcEEEEeeeccccccccccccc----------
Confidence            6899999999999999999876542    1121222222211 1222 33  345679999976533221          


Q ss_pred             HhhhcCCccEEEEEEECCCCCCHHHHH----------hcCCCCcHHHHHHHHHh---------hHHHHHhhcc-chhhhh
Q 038053          101 IGLAKGGIHAVLVVFSVRSRFSQEEEA----------ANGGQPYTDEFLAELKR---------GATELRDQQA-EVDSLK  160 (231)
Q Consensus       101 ~~~~~~~~~~il~vvd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~---------~~~~l~~~~~-~i~~is  160 (231)
                       ...+..+|++++|+|+++.-+-....          .....|++ .+.++.|.         +...+....+ +.+.+|
T Consensus        70 -~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~S  147 (167)
T d1xtqa1          70 -QTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIM-LVGNKKDLHMERVISYEEGKALAESWNAAFLESS  147 (167)
T ss_dssp             -GGGTSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEE-EEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECC
T ss_pred             -chhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhccccccccee-eeccccccccccchhHHHHHHHHHHcCCEEEEEe
Confidence             12346889999999998543332221          12223332 22222220         0012222222 556789


Q ss_pred             hhhHhhHHHHHHHHHH
Q 038053          161 EYSKQEISKLMGQMQE  176 (231)
Q Consensus       161 ~~~~~~i~~l~~~i~~  176 (231)
                      |++|.|+++++..+..
T Consensus       148 ak~~~~v~~~f~~li~  163 (167)
T d1xtqa1         148 AKENQTAVDVFRRIIL  163 (167)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHH
Confidence            9999999999887654

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.12  E-value=5.8e-11  Score=87.71  Aligned_cols=136  Identities=21%  Similarity=0.213  Sum_probs=73.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeee-eeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEM-KTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKR  100 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~  100 (231)
                      .+|+|+|.+|||||||+|.+++..- .   .....|..... ..... .+  ..+.+.|++|....        ..+.. 
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~~~f-~---~~~~~T~~~~~~~~~~~-~~~~~~l~i~d~~g~~~~--------~~~~~-   70 (168)
T d1u8za_           5 HKVIMVGSGGVGKSALTLQFMYDEF-V---EDYEPTKADSYRKKVVL-DGEEVQIDILDTAGQEDY--------AAIRD-   70 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCC-C---SCCCTTCCEEEEEEEEE-TTEEEEEEEEECCC---C--------HHHHH-
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCC-C---cccCCcccccccccccc-ccccccccccccccccch--------hhhhh-
Confidence            6899999999999999999876542 1   11112222111 11222 33  35667999997652        11111 


Q ss_pred             HhhhcCCccEEEEEEECCCCCCHHHHH----------hcCCCCcHHHHHHHHHhhH------H---HHHhhcc-chhhhh
Q 038053          101 IGLAKGGIHAVLVVFSVRSRFSQEEEA----------ANGGQPYTDEFLAELKRGA------T---ELRDQQA-EVDSLK  160 (231)
Q Consensus       101 ~~~~~~~~~~il~vvd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~------~---~l~~~~~-~i~~is  160 (231)
                        ..+..+|++++|+|.++..+.....          .....|++ .+.++.|...      +   .+....+ +.+.+|
T Consensus        71 --~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-ivgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S  147 (168)
T d1u8za_          71 --NYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL-LVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETS  147 (168)
T ss_dssp             --HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEE-EEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECC
T ss_pred             --hcccccceeEEEeeccchhhhhhHHHHHHHHHHhhCCCCCcEE-EEeccccccccccccHHHHHHHHHHcCCeEEEEc
Confidence              1224569999999998543333222          12233433 2223332100      1   2222222 567789


Q ss_pred             hhhHhhHHHHHHHHHH
Q 038053          161 EYSKQEISKLMGQMQE  176 (231)
Q Consensus       161 ~~~~~~i~~l~~~i~~  176 (231)
                      |++|.|+++++..+.+
T Consensus       148 ak~g~gv~e~f~~l~~  163 (168)
T d1u8za_         148 AKTRANVDKVFFDLMR  163 (168)
T ss_dssp             TTTCTTHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHH
Confidence            9999999998776654

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.12  E-value=3.1e-11  Score=93.31  Aligned_cols=93  Identities=13%  Similarity=0.175  Sum_probs=59.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCcccc--------------c-----------------cCCCCcceeeeeeeEEeeC
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKAFKA--------------S-----------------ADSSGVTKTCEMKTTVLKD   71 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~--------------~-----------------~~~~~~t~~~~~~~~~~~~   71 (231)
                      ..+|+++|..++|||||++.|+.......              +                 ...-+.|.......... .
T Consensus         9 ~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~-~   87 (222)
T d1zunb3           9 MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST-A   87 (222)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC-S
T ss_pred             cceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEec-c
Confidence            36899999999999999999963211100              0                 00011222222222333 6


Q ss_pred             CcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH
Q 038053           72 GQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA  127 (231)
Q Consensus        72 ~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~  127 (231)
                      ++.+.++|+||-.+           +...+......+|.+++|+|+..++..+...
T Consensus        88 ~~~~~iiD~PGH~d-----------fv~~~~~g~~~aD~ailVvda~~G~~~Qt~e  132 (222)
T d1zunb3          88 KRKFIIADTPGHEQ-----------YTRNMATGASTCDLAIILVDARYGVQTQTRR  132 (222)
T ss_dssp             SEEEEEEECCCSGG-----------GHHHHHHHHTTCSEEEEEEETTTCSCHHHHH
T ss_pred             ceEEEEEeccchhh-----------hhhhhccccccCceEEEEeccccCcccchHH
Confidence            77899999999765           2222233447789999999999899888766

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.11  E-value=9.5e-11  Score=86.53  Aligned_cols=139  Identities=14%  Similarity=0.123  Sum_probs=75.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEe-eCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      .+|+++|.+|||||||++.+++......  ..+............. .....+.+.|++|.....    .    +.   .
T Consensus         4 iKi~vvG~~~vGKTsLi~~~~~~~f~~~--~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~----~----~~---~   70 (170)
T d1ek0a_           4 IKLVLLGEAAVGKSSIVLRFVSNDFAEN--KEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFA----S----LA---P   70 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTT--CCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG----G----GH---H
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcc--ccccccceeeccccccccccccccccccCCchhHH----H----HH---H
Confidence            6899999999999999998887653211  1111111111111222 122467789999975421    1    11   1


Q ss_pred             hhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHH------------hhHHHHHhhcc-chhhhh
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELK------------RGATELRDQQA-EVDSLK  160 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~------------~~~~~l~~~~~-~i~~is  160 (231)
                      ..+..+|++++|+|++++-+.....         .....+.. .+.++.+            .+...+....+ +.+.+|
T Consensus        71 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~-~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~S  149 (170)
T d1ek0a_          71 MYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIA-LVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETS  149 (170)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEE-EEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECC
T ss_pred             HHHhccceEEEEEeCCcccchhhhhhhhhhhcccccccccee-eeecccccccccchhhhhHHHHHHHHHHcCCEEEEec
Confidence            2346789999999998543333322         11111111 1111111            00012222222 667789


Q ss_pred             hhhHhhHHHHHHHHHH
Q 038053          161 EYSKQEISKLMGQMQE  176 (231)
Q Consensus       161 ~~~~~~i~~l~~~i~~  176 (231)
                      |++|.|+++++..+.+
T Consensus       150 ak~g~gV~e~F~~i~~  165 (170)
T d1ek0a_         150 AKTGENVNDVFLGIGE  165 (170)
T ss_dssp             TTTCTTHHHHHHHHHT
T ss_pred             CCCCcCHHHHHHHHHH
Confidence            9999999998877643

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=5.2e-11  Score=88.36  Aligned_cols=138  Identities=17%  Similarity=0.107  Sum_probs=75.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+++|.+|||||||+|.+++......  ..+............. .+  ..+.+.|++|....           ....
T Consensus         7 ~KI~vvG~~~vGKSSli~~~~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~i~d~~g~~~~-----------~~~~   72 (174)
T d1wmsa_           7 FKVILLGDGGVGKSSLMNRYVTNKFDTQ--LFHTIGVEFLNKDLEV-DGHFVTMQIWDTAGQERF-----------RSLR   72 (174)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCC------CCSEEEEEEEEEE-TTEEEEEEEEECCCCGGG-----------HHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCCCCCc--cccceeeeeeeeeeee-cCceeeEeeecccCccee-----------hhhh
Confidence            4799999999999999999886542111  1111111111111222 32  45568999996541           1223


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH-------------hcCCCCcHHHHHHHHHh--------hHHHHHhhc-c-chhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA-------------ANGGQPYTDEFLAELKR--------GATELRDQQ-A-EVDS  158 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~--------~~~~l~~~~-~-~i~~  158 (231)
                      ......++++++++|.++..+.....             .....|++ .+.++.|.        +...+.... . +++.
T Consensus        73 ~~~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~pii-lVgnK~Dl~~~~v~~~~~~~~~~~~~~~~~~e  151 (174)
T d1wmsa_          73 TPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFV-ILGNKIDISERQVSTEEAQAWCRDNGDYPYFE  151 (174)
T ss_dssp             GGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEE-EEEECTTCSSCSSCHHHHHHHHHHTTCCCEEE
T ss_pred             hhhhhccceEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEE-EeccccchhhccCcHHHHHHHHHHcCCCeEEE
Confidence            34457889999999998432222111             11123333 22233221        111232222 2 5677


Q ss_pred             hhhhhHhhHHHHHHHHHH
Q 038053          159 LKEYSKQEISKLMGQMQE  176 (231)
Q Consensus       159 is~~~~~~i~~l~~~i~~  176 (231)
                      +|+++|.|+++++..+.+
T Consensus       152 ~Sak~~~gI~e~f~~l~~  169 (174)
T d1wmsa_         152 TSAKDATNVAAAFEEAVR  169 (174)
T ss_dssp             CCTTTCTTHHHHHHHHHH
T ss_pred             EcCCCCcCHHHHHHHHHH
Confidence            899999999998876654

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1e-10  Score=86.95  Aligned_cols=138  Identities=14%  Similarity=0.061  Sum_probs=77.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEEe-eCCcEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~-~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+++|.+|+|||||++.+++..-.    .....|...... .... .....+.+.|++|......           ..
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~~~f~----~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~-----------~~   67 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSKDQFP----EVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDR-----------LR   67 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCC----SSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTT-----------TG
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCC----CCcCCceeeeccccccccccceeeeccccCccchhcc-----------cc
Confidence            57999999999999999998876531    122222221111 1111 1233577899999754221           12


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhh---------------------HHHHHh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRG---------------------ATELRD  151 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~---------------------~~~l~~  151 (231)
                      ...+..+|++++|+|+++.-+-+...         .....|++ .+.++.|..                     +..+..
T Consensus        68 ~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~pii-lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~  146 (177)
T d1kmqa_          68 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII-LVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMAN  146 (177)
T ss_dssp             GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEE-EEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHH
T ss_pred             hhhcccchhhhhhcccchhHHHHHHHHHHHHHHHHhCCCCceE-EeeecccccchhhHHHHHHHhhcccccHHHHHHHHH
Confidence            33457889999999998533222211         22233433 122332210                     011111


Q ss_pred             hcc--chhhhhhhhHhhHHHHHHHHHHH
Q 038053          152 QQA--EVDSLKEYSKQEISKLMGQMQES  177 (231)
Q Consensus       152 ~~~--~i~~is~~~~~~i~~l~~~i~~~  177 (231)
                      ..+  +.+.+||++|.|+++++..+...
T Consensus       147 ~~~~~~~~E~SAkt~~gi~e~F~~i~~~  174 (177)
T d1kmqa_         147 RIGAFGYMECSAKTKDGVREVFEMATRA  174 (177)
T ss_dssp             HTTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             HcCCcEEEEecCCCCcCHHHHHHHHHHH
Confidence            122  34568999999999988776653

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=2.9e-10  Score=83.96  Aligned_cols=139  Identities=19%  Similarity=0.172  Sum_probs=74.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+|+|.+|||||||++.+++..-. .  ...++..+........ .+  ..+.+.|++|......        ...  
T Consensus         6 ~Ki~lvG~~~vGKTsLi~r~~~~~f~-~--~~~~t~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~--------~~~--   71 (171)
T d2erya1           6 YRLVVVGGGGVGKSALTIQFIQSYFV-T--DYDPTIEDSYTKQCVI-DDRAARLDILDTAGQEEFGA--------MRE--   71 (171)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSCCC-S--SCCTTCCEEEEEEEEE-TTEEEEEEEEECC----CCH--------HHH--
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCC-c--ccCcccccceeeeeee-cccccccccccccccccccc--------ccc--
Confidence            68999999999999999998875421 1  1111111222222222 33  3567899999765321        111  


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH----------hcCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA----------ANGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKE  161 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~  161 (231)
                       ..+..+|++++|+|.++.-+.....          .....|++ .+.++.+..         ...+....+ +.+.+||
T Consensus        72 -~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa  149 (171)
T d2erya1          72 -QYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMI-LIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASA  149 (171)
T ss_dssp             -HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCSEE-EEEECTTCTTSCSSCHHHHHHHHHHTTCEEEECBT
T ss_pred             -ccccccceEEEeeccccccchhhHHHHhHHHHhhcccCCCCEE-EEEeccchhhhccchHHHHHHHHHHcCCEEEEEcC
Confidence             1224569999999998432222111          12233333 223332210         012222222 5567899


Q ss_pred             hhHhhHHHHHHHHHHHH
Q 038053          162 YSKQEISKLMGQMQESY  178 (231)
Q Consensus       162 ~~~~~i~~l~~~i~~~~  178 (231)
                      ++|.|+++++..+.+..
T Consensus       150 k~~~~i~e~f~~l~~~i  166 (171)
T d2erya1         150 KIRMNVDQAFHELVRVI  166 (171)
T ss_dssp             TTTBSHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHH
Confidence            99999999988877643

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.09  E-value=1e-10  Score=86.08  Aligned_cols=137  Identities=18%  Similarity=0.099  Sum_probs=75.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEEeeC--CcEEEEEeCCCCcCCCCCchHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTVLKD--GQVVNVIDTPGLFDSSAGSEFVGKEIVKR  100 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~  100 (231)
                      .+|+|+|.+|||||||+|.+++..-..   ... .|...... ......  ...+.+.|++|......        +.  
T Consensus         5 ~Ki~lvG~~~vGKTsli~rl~~~~f~~---~~~-~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~--------~~--   70 (167)
T d1z0ja1           5 LKVCLLGDTGVGKSSIMWRFVEDSFDP---NIN-PTIGASFMTKTVQYQNELHKFLIWDTAGLERFRA--------LA--   70 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCT---TCC-CCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGG--------GT--
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCCc---ccc-cccccccccccccccccccceeeeecCCchhhhH--------HH--
Confidence            689999999999999999998765311   111 12111111 111112  23456789999664211        11  


Q ss_pred             HhhhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHh---------hHHHHHhhcc-chhhhhh
Q 038053          101 IGLAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKR---------GATELRDQQA-EVDSLKE  161 (231)
Q Consensus       101 ~~~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~---------~~~~l~~~~~-~i~~is~  161 (231)
                       ...+..+|++++++|+++.-+.....         .....|++ .+.++.|.         +...+....+ +.+.+||
T Consensus        71 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ii-lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA  148 (167)
T d1z0ja1          71 -PMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVA-IAGNKCDLTDVREVMERDAKDYADSIHAIFVETSA  148 (167)
T ss_dssp             -HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEE-EEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBT
T ss_pred             -HHHHhhccceEEEeeechhhhhhhHHHhhhhhhhccCCcceEE-EecccchhccccchhHHHHHHHHHHcCCEEEEEec
Confidence             12236789999999998432222222         11222222 22222221         0012222222 5677899


Q ss_pred             hhHhhHHHHHHHHHH
Q 038053          162 YSKQEISKLMGQMQE  176 (231)
Q Consensus       162 ~~~~~i~~l~~~i~~  176 (231)
                      ++|.|+++++..+.+
T Consensus       149 k~~~nV~e~f~~l~~  163 (167)
T d1z0ja1         149 KNAININELFIEISR  163 (167)
T ss_dssp             TTTBSHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHH
Confidence            999999998887655

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=4.1e-10  Score=83.31  Aligned_cols=141  Identities=18%  Similarity=0.143  Sum_probs=76.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+|+|.+|+|||||+|.+++...... ...+.+..+........ .+  ..+.+.|+|+...        ..++  ..
T Consensus         4 ~Kv~lvG~~~vGKTsLi~~~~~~~~~~~-~~~~t~~~~~~~~~~~~-~~~~~~~~~~d~~~~~g--------~e~~--~~   71 (172)
T d2g3ya1           4 YRVVLIGEQGVGKSTLANIFAGVHDSMD-SDCEVLGEDTYERTLMV-DGESATIILLDMWENKG--------ENEW--LH   71 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCCCCTTC-CC---CCTTEEEEEEEE-TTEEEEEEEECCTTTTH--------HHHH--HH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCcCCcc-ccccceeeecceeeecc-CCceeeeeeeccccccc--------cccc--cc
Confidence            6899999999999999999998653211 01111111111111222 33  3456778776432        1122  12


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH----------hcCCCCcHHHHHHHHHh---------hHHHHHhhcc-chhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA----------ANGGQPYTDEFLAELKR---------GATELRDQQA-EVDSLKE  161 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~---------~~~~l~~~~~-~i~~is~  161 (231)
                      ...+..+|++++|+|+++.-+.....          .....|++ .+.++.|.         ++..+....+ +.+.+||
T Consensus        72 ~~~~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~pii-lvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa  150 (172)
T d2g3ya1          72 DHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII-LVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSA  150 (172)
T ss_dssp             HCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEE-EEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBT
T ss_pred             cccccccceeeeeecccccchhhhhhhhhhhhhhccccCCceEE-EEeccccccccccccHHHHHHHHHHcCCeEEEEeC
Confidence            23467899999999998543333222          11233333 22233321         0012322222 5566899


Q ss_pred             hhHhhHHHHHHHHHHH
Q 038053          162 YSKQEISKLMGQMQES  177 (231)
Q Consensus       162 ~~~~~i~~l~~~i~~~  177 (231)
                      ++|.|+++++..+...
T Consensus       151 k~g~~i~~~f~~l~~~  166 (172)
T d2g3ya1         151 AVQHNVKELFEGIVRQ  166 (172)
T ss_dssp             TTTBSHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHH
Confidence            9999999988776653

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.08  E-value=5.9e-11  Score=88.19  Aligned_cols=80  Identities=13%  Similarity=0.141  Sum_probs=46.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+|||++|||||||+|.|++.......+ ..+.+    ...... .+....+.|+++......           ....
T Consensus        14 ~kI~lvG~~~vGKTsLl~~l~~~~~~~~~~-~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~-----------~~~~   76 (186)
T d1f6ba_          14 GKLVFLGLDNAGKTTLLHMLKDDRLGQHVP-TLHPT----SEELTI-AGMTFTTFDLGGHIQARR-----------VWKN   76 (186)
T ss_dssp             EEEEEEEETTSSHHHHHHHHSCC------C-CCCCS----CEEEEE-TTEEEEEEEECC----CC-----------GGGG
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCcceec-ccccc----eeEEEe-cccccccccccchhhhhh-----------HHhh
Confidence            799999999999999999999987533211 11111    112222 455566777777554221           1123


Q ss_pred             hcCCccEEEEEEECCCC
Q 038053          104 AKGGIHAVLVVFSVRSR  120 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~  120 (231)
                      .....+.+++++|..+.
T Consensus        77 ~~~~~~~~~~~~d~~d~   93 (186)
T d1f6ba_          77 YLPAINGIVFLVDCADH   93 (186)
T ss_dssp             GGGGCSEEEEEEETTCG
T ss_pred             hhcccceeeeeeeccCc
Confidence            34567888999988743

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.07  E-value=1.1e-10  Score=92.32  Aligned_cols=108  Identities=27%  Similarity=0.359  Sum_probs=71.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh---CCCccccccCC-------------CCcceeeeeeeEEeeCCcEEEEEeCCCCcCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSIL---GRKAFKASADS-------------SGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSS   87 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~---g~~~~~~~~~~-------------~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~   87 (231)
                      .+|+++|+.|+|||||+.+|+   |..........             -+.|.........| ++..+.++||||..+. 
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~-~~~~~n~iDtPGh~dF-   80 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF-RGHRVFLLDAPGYGDF-   80 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEE-TTEEEEEEECCCSGGG-
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccc-cccceeEEccCchhhh-
Confidence            579999999999999999984   43321111111             22344444455667 8889999999998762 


Q ss_pred             CCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHh
Q 038053           88 AGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKR  144 (231)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~  144 (231)
                            ..++.    .++..+|.+++|+|+.+++......     .....|.+ .++|++++
T Consensus        81 ------~~e~~----~al~~~D~avlvvda~~Gv~~~t~~~~~~~~~~~~p~~-i~iNk~D~  131 (267)
T d2dy1a2          81 ------VGEIR----GALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRM-VVVTKLDK  131 (267)
T ss_dssp             ------HHHHH----HHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEE-EEEECGGG
T ss_pred             ------hhhhh----hhhcccCceEEEeeccCCccchhHHHHHhhhhcccccc-cccccccc
Confidence                  22333    3345569999999999888887766     33445554 34455553

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=3.7e-10  Score=83.19  Aligned_cols=137  Identities=16%  Similarity=0.133  Sum_probs=76.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|++||.+|+|||||++.+++..-.    .....|............+  ..+.+.|++|.....     .   ...  
T Consensus         3 iKi~lvG~~~vGKTsli~r~~~~~f~----~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-----~---~~~--   68 (168)
T d2atva1           3 VKLAIFGRAGVGKSALVVRFLTKRFI----WEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI-----Q---REG--   68 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCC----SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH-----H---HHH--
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCCCC----CccCCceeccccccccccccceEEEEeecccccccc-----c---chh--
Confidence            68999999999999999999975421    1222232222222111133  356789999976421     1   111  


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH----------hcCCCCcHHHHHHHHHhh---------HHHHHhhcc-chhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA----------ANGGQPYTDEFLAELKRG---------ATELRDQQA-EVDSLKE  161 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~---------~~~l~~~~~-~i~~is~  161 (231)
                        .+..++++++|+|++++-+.....          .....|++ .+.++.|..         ...+....+ +.+.+||
T Consensus        69 --~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-lvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~Sa  145 (168)
T d2atva1          69 --HMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLI-LVGNKADLDHSRQVSTEEGEKLATELACAFYECSA  145 (168)
T ss_dssp             --HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEE-EEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCT
T ss_pred             --hhcccccceeecccCCccchhhhhhhcccccccccccCccee-eeccchhhhhhccCcHHHHHHHHHHhCCeEEEEcc
Confidence              123569999999998542222211          12233333 223333210         012222222 5566899


Q ss_pred             hhHhh-HHHHHHHHHHH
Q 038053          162 YSKQE-ISKLMGQMQES  177 (231)
Q Consensus       162 ~~~~~-i~~l~~~i~~~  177 (231)
                      ++|.+ +++++..+...
T Consensus       146 ktg~gnV~e~F~~l~~~  162 (168)
T d2atva1         146 CTGEGNITEIFYELCRE  162 (168)
T ss_dssp             TTCTTCHHHHHHHHHHH
T ss_pred             ccCCcCHHHHHHHHHHH
Confidence            99985 98887766553

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.07  E-value=5.9e-12  Score=97.84  Aligned_cols=82  Identities=20%  Similarity=0.081  Sum_probs=55.4

Q ss_pred             CCCCCcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEEeeCCcEEEEEeCC
Q 038053            3 SGMGERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTVLKDGQVVNVIDTP   81 (231)
Q Consensus         3 ~~~~~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~Dtp   81 (231)
                      |+||.-.+  |++|++. +  ..++|+|+||||||||+++|+|...+..|    .+....... .....+....+++|.|
T Consensus         9 k~~g~~~~--~vs~~~~-~--e~~~liGpnGaGKSTll~~i~Gl~~p~~G----~I~~~G~~i~~~~~~~r~ig~v~Q~~   79 (240)
T d2onka1           9 KRLGNFRL--NVDFEMG-R--DYCVLLGPTGAGKSVFLELIAGIVKPDRG----EVRLNGADITPLPPERRGIGFVPQDY   79 (240)
T ss_dssp             EEETTEEE--EEEEEEC-S--SEEEEECCTTSSHHHHHHHHHTSSCCSEE----EEEETTEECTTSCTTTSCCBCCCSSC
T ss_pred             EEECCEEE--EEEEEeC-C--EEEEEECCCCChHHHHHHHHHcCCCCCce----EEEECCEECCcCCHHHcCceeeccch
Confidence            56666555  7888885 4  58899999999999999999999985443    222211100 0001134567889999


Q ss_pred             CCcCCCCCchHH
Q 038053           82 GLFDSSAGSEFV   93 (231)
Q Consensus        82 g~~~~~~~~~~~   93 (231)
                      .+++..++.+++
T Consensus        80 ~l~~~ltV~enl   91 (240)
T d2onka1          80 ALFPHLSVYRNI   91 (240)
T ss_dssp             CCCTTSCHHHHH
T ss_pred             hhcccchhhHhh
Confidence            999877765543

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=3.7e-11  Score=88.99  Aligned_cols=138  Identities=15%  Similarity=0.078  Sum_probs=75.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee--eEEe-eCCcEEEEEeCCCCcCCCCCchHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK--TTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKR  100 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~--~~~~-~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~  100 (231)
                      .+|+++|.+|+|||||++.+++..-.    .....|......  .... .....+.+.||||.....           ..
T Consensus         4 ~Ki~vvG~~~vGKTsli~~~~~~~f~----~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-----------~~   68 (170)
T d1i2ma_           4 FKLVLVGDGGTGKTTFVKRHLTGEFE----KKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFG-----------GL   68 (170)
T ss_dssp             EEEEEEECTTSSHHHHHHTTC---------CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHS-----------SC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCC----cccccceeccccccccccccccccccccccccccccc-----------ee
Confidence            58999999999999999999876531    111112211111  1111 123467899999954311           11


Q ss_pred             HhhhcCCccEEEEEEECCCCCCHHHHH--------hcCCCCcHHHHHHHHHhhH-------HHHHhhcc-chhhhhhhhH
Q 038053          101 IGLAKGGIHAVLVVFSVRSRFSQEEEA--------ANGGQPYTDEFLAELKRGA-------TELRDQQA-EVDSLKEYSK  164 (231)
Q Consensus       101 ~~~~~~~~~~il~vvd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~-------~~l~~~~~-~i~~is~~~~  164 (231)
                      ....+..+|++++|+|++++-+-....        .....|++ .+.++.|...       .......+ +.+.+||++|
T Consensus        69 ~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~pii-lvgnK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sak~~  147 (170)
T d1i2ma_          69 RDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIV-LCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSN  147 (170)
T ss_dssp             GGGGTTTCCEEEEEEETTSGGGGTTHHHHHHHHHHHHCSCCEE-EEEECCCCSCSCCTTTSHHHHSSCSSEEEEEBTTTT
T ss_pred             cchhcccccchhhccccccccccchhHHHHHHHhhccCCCcee-eecchhhhhhhhhhhHHHHHHHHcCCEEEEEeCCCC
Confidence            223457889999999998543322211        12223332 2223322100       11111111 5667899999


Q ss_pred             hhHHHHHHHHHHH
Q 038053          165 QEISKLMGQMQES  177 (231)
Q Consensus       165 ~~i~~l~~~i~~~  177 (231)
                      .|+++++..+.+.
T Consensus       148 ~~v~e~f~~l~~~  160 (170)
T d1i2ma_         148 YNFEKPFLWLARK  160 (170)
T ss_dssp             BTTTHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH
Confidence            9999988877653

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.04  E-value=5.2e-11  Score=87.45  Aligned_cols=88  Identities=16%  Similarity=0.177  Sum_probs=51.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+++|.+|||||||++.+++..-........+.+.......... ......+.|++|.....       ...   ...
T Consensus         3 ~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-------~~~---~~~   71 (165)
T d1z06a1           3 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDG-ERIKIQLWDTAGQERFR-------KSM---VQH   71 (165)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETT-EEEEEEEEECCCSHHHH-------TTT---HHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeec-cceEEEEEeccCchhhc-------ccc---cee
Confidence            5799999999999999999986543211112222222111111111 23456678888854310       001   112


Q ss_pred             hcCCccEEEEEEECCCCCC
Q 038053          104 AKGGIHAVLVVFSVRSRFS  122 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~~~~  122 (231)
                      .+..+|++++|+|+++.-+
T Consensus        72 ~~~~~d~~ilv~d~~~~~s   90 (165)
T d1z06a1          72 YYRNVHAVVFVYDMTNMAS   90 (165)
T ss_dssp             HHTTCCEEEEEEETTCHHH
T ss_pred             eecCCCceEEEEEeehhhh
Confidence            3467899999999985433

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.03  E-value=2.7e-10  Score=90.41  Aligned_cols=108  Identities=23%  Similarity=0.367  Sum_probs=69.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh---CCCccccccC-------------CCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSIL---GRKAFKASAD-------------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSS   87 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~---g~~~~~~~~~-------------~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~   87 (231)
                      .+|+|+|..|+|||||+.+|+   |.........             .-+.|.........| ++..+.++||||..+..
T Consensus         7 Rni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~-~~~~~n~iDtPG~~dF~   85 (276)
T d2bv3a2           7 RNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW-KDHRINIIDAPGHVDFT   85 (276)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEE-TTEEEEEECCCSSSSCS
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeecc-CCeEEEEecCCchhhhH
Confidence            579999999999999999985   3322111111             123344444556677 89999999999998743


Q ss_pred             CCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH-----hcCCCCcHHHHHHHHHh
Q 038053           88 AGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA-----ANGGQPYTDEFLAELKR  144 (231)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~  144 (231)
                      .       ++.    .++..+|..++|||+.+++......     .....|.+ .++|++|+
T Consensus        86 ~-------e~~----~~l~~~D~avlVvda~~Gv~~~T~~~w~~a~~~~lP~i-~fINKmDr  135 (276)
T d2bv3a2          86 I-------EVE----RSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRI-AFANKMDK  135 (276)
T ss_dssp             T-------THH----HHHHHCCEEEEEEETTTSSCHHHHHHHHHHHTTTCCEE-EEEECTTS
T ss_pred             H-------HHH----HHHHhhhheEEeccccCCcchhHHHHHHHHHHcCCCEE-EEEecccc
Confidence            1       222    2334569999999999777766654     33444443 34455553

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=2.2e-09  Score=79.61  Aligned_cols=77  Identities=25%  Similarity=0.248  Sum_probs=49.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+++|.+|||||||++.+++....    ....++.......... .+  ..+.+.||+|...     .       .+ 
T Consensus         6 ~ki~vlG~~~vGKTsLi~~~~~~~f~----~~~~t~~~~~~~~i~v-~~~~~~l~i~Dt~g~~~-----~-------~~-   67 (175)
T d2bmja1           6 LRLGVLGDARSGKSSLIHRFLTGSYQ----VLEKTESEQYKKEMLV-DGQTHLVLIREEAGAPD-----A-------KF-   67 (175)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHHSCCC----CCCCSSCEEEEEEEEE-TTEEEEEEEEECSSCCC-----H-------HH-
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCCCC----CcCCccceeEEEEeec-CceEEEEEEeecccccc-----c-------cc-
Confidence            79999999999999999998887642    1111121111111222 44  3466789999654     1       11 


Q ss_pred             hhhcCCccEEEEEEECCCCC
Q 038053          102 GLAKGGIHAVLVVFSVRSRF  121 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~  121 (231)
                         +..+|++++|+|+++.-
T Consensus        68 ---~~~ad~~ilVfd~~~~~   84 (175)
T d2bmja1          68 ---SGWADAVIFVFSLEDEN   84 (175)
T ss_dssp             ---HHHCSEEEEEEETTCHH
T ss_pred             ---ccccceeEEEeecccch
Confidence               23469999999998543

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.99  E-value=1.8e-10  Score=88.48  Aligned_cols=60  Identities=25%  Similarity=0.276  Sum_probs=38.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcccccc-----CCCC-cceeeeeeeEEeeCCcEEEEEeCCCCcCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASA-----DSSG-VTKTCEMKTTVLKDGQVVNVIDTPGLFDSS   87 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~-----~~~~-~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~   87 (231)
                      ...+|+|.+|+|||||+|+|.+......+.     ..|- +|+......    -...++++||||+....
T Consensus        96 kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~----l~~gg~iiDTPG~r~~~  161 (225)
T d1u0la2          96 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLK----FDFGGYVVDTPGFANLE  161 (225)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEE----CTTSCEEESSCSSTTCC
T ss_pred             CeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEE----ECCCcEEEeCCcccccc
Confidence            789999999999999999999876433321     1222 333222222    22346899999996543

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.98  E-value=6.8e-10  Score=81.84  Aligned_cols=140  Identities=17%  Similarity=0.163  Sum_probs=76.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEe-eCCcEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      ..+|+++|.+|||||||++.+++..-...  ..+... +........ .....+.+.|++|.......        .   
T Consensus         4 t~Ki~lvG~~~vGKTsll~~~~~~~~~~~--~~~t~~-~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~--------~---   69 (169)
T d1x1ra1           4 TYKLVVVGDGGVGKSALTIQFFQKIFVPD--YDPTIE-DSYLKHTEIDNQWAILDVLDTAGQEEFSAM--------R---   69 (169)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCTT--CCTTCC-EEEEEEEEETTEEEEEEEEECCSCGGGCSS--------H---
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCcc--cCccee-eccccccccccccccccccccccccccccc--------h---
Confidence            37899999999999999999887542111  111111 111111222 12345668999997653221        1   


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH----------hcCCCCcHHHHHHHHHh---------hHHHHHhhcc-chhhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA----------ANGGQPYTDEFLAELKR---------GATELRDQQA-EVDSLKE  161 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~---------~~~~l~~~~~-~i~~is~  161 (231)
                      ...+..+|++++|+|++++-+-....          .....|++ .+.++.+.         +...+....+ +.+.+||
T Consensus        70 ~~~~~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~i-lvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~Sa  148 (169)
T d1x1ra1          70 EQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMI-LVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSA  148 (169)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEE-EEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBC
T ss_pred             hhhhhhccEEEEecccccchhhhccchhhHHHHhhccccCccEE-EEecccchhhhceeehhhHHHHHHHcCCEEEEEcC
Confidence            11224569999999998533322211          12223332 12222220         0012222222 6677899


Q ss_pred             hhHh-hHHHHHHHHHHH
Q 038053          162 YSKQ-EISKLMGQMQES  177 (231)
Q Consensus       162 ~~~~-~i~~l~~~i~~~  177 (231)
                      +++. |+++++..+.+.
T Consensus       149 k~~~~nV~~~F~~l~~~  165 (169)
T d1x1ra1         149 KDPPLNVDKTFHDLVRV  165 (169)
T ss_dssp             SSSCBSHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHH
Confidence            8876 999988877654

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=2e-09  Score=80.83  Aligned_cols=83  Identities=25%  Similarity=0.160  Sum_probs=52.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+|+|.+|+|||||++.+++..-.    .....|............+  ..+.+.|++|.....           ...
T Consensus         4 iKvvllG~~~vGKTSli~r~~~~~f~----~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-----------~~~   68 (191)
T d2ngra_           4 IKCVVVGDGAVGKTCLLISYTTNKFP----SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYD-----------RLR   68 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCC----SSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGT-----------TTG
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCC----CCcCCceeeecceeEeeCCceeeeeccccccchhhh-----------hhh
Confidence            58999999999999999998876531    1222222222211111133  357789999965421           112


Q ss_pred             hhhcCCccEEEEEEECCCCC
Q 038053          102 GLAKGGIHAVLVVFSVRSRF  121 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~  121 (231)
                      ...+..+|++++|+|+++.-
T Consensus        69 ~~~~~~~~~~ilv~d~~~~~   88 (191)
T d2ngra_          69 PLSYPQTDVFLVCFSVVSPS   88 (191)
T ss_dssp             GGGCTTCSEEEEEEETTCHH
T ss_pred             hhcccccceeecccccchHH
Confidence            33456889999999998543

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=7.2e-10  Score=82.71  Aligned_cols=138  Identities=13%  Similarity=0.051  Sum_probs=75.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEe-eCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIG  102 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~  102 (231)
                      .+|+|+|.+|||||||+|.+++..-..   ...++..+........ .....+.+.|++|.....           ....
T Consensus         6 iKivviG~~~vGKTsli~~~~~~~f~~---~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~-----------~~~~   71 (183)
T d1mh1a_           6 IKCVVVGDGAVGKTCLLISYTTNAFPG---EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYD-----------RLRP   71 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSSCCS---SCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGT-----------TTGG
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCCCCc---ccccceeeceeeeeeccCcceEEEeecccccccch-----------hhhh
Confidence            689999999999999999998765311   1111111111111211 112345578888754321           1122


Q ss_pred             hhcCCccEEEEEEECCCCCCHHHHH---------hcCCCCcHHHHHHHHHhhH---------------------HHHHhh
Q 038053          103 LAKGGIHAVLVVFSVRSRFSQEEEA---------ANGGQPYTDEFLAELKRGA---------------------TELRDQ  152 (231)
Q Consensus       103 ~~~~~~~~il~vvd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~---------------------~~l~~~  152 (231)
                      ..+..+|++++|+|+++.-+-+...         .....|++ .+.++.|...                     ..+...
T Consensus        72 ~~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~~~~~pii-lvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  150 (183)
T d1mh1a_          72 LSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPII-LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKE  150 (183)
T ss_dssp             GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEE-EEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHH
T ss_pred             hcccccceeeeeeccchHHHHHHHHHHHHHHHHHhCCCCcEE-EEeecccchhhhhhhhhhhhccccchhhHHHHHHHHH
Confidence            3457889999999998533322221         22333443 2223332100                     011111


Q ss_pred             cc--chhhhhhhhHhhHHHHHHHHHH
Q 038053          153 QA--EVDSLKEYSKQEISKLMGQMQE  176 (231)
Q Consensus       153 ~~--~i~~is~~~~~~i~~l~~~i~~  176 (231)
                      .+  +.+.+||++|.|+++++..+.+
T Consensus       151 ~~~~~~~E~SAk~~~~V~e~F~~l~~  176 (183)
T d1mh1a_         151 IGAVKYLECSALTQRGLKTVFDEAIR  176 (183)
T ss_dssp             TTCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred             cCCceEEEcCCCCCcCHHHHHHHHHH
Confidence            11  3455799999999998777654

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=2.6e-09  Score=79.80  Aligned_cols=82  Identities=18%  Similarity=0.132  Sum_probs=50.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCC--cEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+|+|.+|||||||++.++...- ..  ...++........... .+  ..+.+.|++|......           ..
T Consensus        10 ~Ki~lvG~~~vGKTsLi~r~~~~~f-~~--~~~~Ti~~~~~~~~~~-~~~~~~l~i~D~~g~e~~~~-----------~~   74 (185)
T d2atxa1          10 LKCVVVGDGAVGKTCLLMSYANDAF-PE--EYVPTVFDHYAVSVTV-GGKQYLLGLYDTAGQEDYDR-----------LR   74 (185)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSSC-CC--SCCCSSCCCEEEEEES-SSCEEEEEEECCCCSSSSTT-----------TG
T ss_pred             EEEEEECCCCCCHHHHHHHHhhCCC-CC--cCCCceeeeeeEEEee-CCceEEeecccccccchhhh-----------hh
Confidence            6899999999999999999887542 11  1111111111111222 22  3466899999754221           11


Q ss_pred             hhhcCCccEEEEEEECCCC
Q 038053          102 GLAKGGIHAVLVVFSVRSR  120 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~  120 (231)
                      ...+..+|++++|+|+++.
T Consensus        75 ~~~~~~a~~~ilv~d~t~~   93 (185)
T d2atxa1          75 PLSYPMTDVFLICFSVVNP   93 (185)
T ss_dssp             GGGCTTCSEEEEEEETTCH
T ss_pred             hhcccccceeeeccccchH
Confidence            2345778999999999853

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=3.1e-09  Score=77.92  Aligned_cols=137  Identities=15%  Similarity=0.135  Sum_probs=76.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeee-eEEe-eCCcEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMK-TTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~-~~~~-~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|++||.+|||||||++.+++..-.    .....|...... .... .....+.+.|++|......    .    ..  
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~~~f~----~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~----~----~~--   69 (167)
T d1c1ya_           4 YKLVVLGSGGVGKSALTVQFVQGIFV----EKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTA----M----RD--   69 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCCCC----CSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTT----H----HH--
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCC----CccCCccccccceeEEeeeeEEEeccccccCcccccc----c----cc--
Confidence            68999999999999999998876531    111122221111 1111 1234577899999775321    1    11  


Q ss_pred             hhhcCCccEEEEEEECCCCCCHHHHH---------h-cCCCCcHHHHHHHHHhh---------HHHHHhh-cc-chhhhh
Q 038053          102 GLAKGGIHAVLVVFSVRSRFSQEEEA---------A-NGGQPYTDEFLAELKRG---------ATELRDQ-QA-EVDSLK  160 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~~~~~~~~---------~-~~~~~~~~~~~~~~~~~---------~~~l~~~-~~-~i~~is  160 (231)
                       ..+..+|++++++|+++..+.+...         . ....|++ .+.++.+..         ...+... .. +.+.+|
T Consensus        70 -~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~i-lvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~S  147 (167)
T d1c1ya_          70 -LYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMI-LVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESS  147 (167)
T ss_dssp             -HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEE-EEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECB
T ss_pred             -ccccccceeEEeeeccchhhhHhHHHHHHHHHHhcCCCCCeEE-EEEEecCcccccccchhHHHHHHHHhCCCEEEEEc
Confidence             1224569999999998543333322         1 1223333 222332210         0122222 12 566789


Q ss_pred             hhhHhhHHHHHHHHHH
Q 038053          161 EYSKQEISKLMGQMQE  176 (231)
Q Consensus       161 ~~~~~~i~~l~~~i~~  176 (231)
                      |++|.|+++++..+..
T Consensus       148 ak~g~gv~e~F~~l~~  163 (167)
T d1c1ya_         148 AKSKINVNEIFYDLVR  163 (167)
T ss_dssp             TTTTBSHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHH
Confidence            9999999998877654

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.90  E-value=2.3e-09  Score=81.36  Aligned_cols=82  Identities=18%  Similarity=0.267  Sum_probs=52.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhh
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLA  104 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~  104 (231)
                      .|+|+|++|||||||+|.|++......   .++.+............+..+.++|+||...       .....   ....
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~-------~~~~~---~~~~   68 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDT---QTSITDSSAIYKVNNNRGNSLTLIDLPGHES-------LRFQL---LDRF   68 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCB---CCCCSCEEEEEECSSTTCCEEEEEECCCCHH-------HHHHH---HHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcc---cCCeeEEEEEEEEeeeeeeeeeeeecccccc-------ccchh---hhhh
Confidence            699999999999999999998764322   2222222111122122456788999999542       11112   2223


Q ss_pred             cCCccEEEEEEECCC
Q 038053          105 KGGIHAVLVVFSVRS  119 (231)
Q Consensus       105 ~~~~~~il~vvd~~~  119 (231)
                      ...++.+++|+|.++
T Consensus        69 ~~~~~~~i~v~D~~d   83 (207)
T d2fh5b1          69 KSSARAVVFVVDSAA   83 (207)
T ss_dssp             GGGEEEEEEEEETTT
T ss_pred             hhhccccceEEEccc
Confidence            467799999999873

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=98.89  E-value=2.4e-10  Score=88.74  Aligned_cols=40  Identities=23%  Similarity=0.273  Sum_probs=36.4

Q ss_pred             CcccCCCcccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053            7 ERVIDGDWKPTSSSNGKRTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus         7 ~~~~~~~~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      ....++++||++++|  ..+||+|+||||||||+++|+|...
T Consensus        11 ~~~~l~~isl~I~~G--ei~~iiG~nGaGKSTLl~~l~Gl~~   50 (231)
T d1l7vc_          11 ESTRLGPLSGEVRAG--EILHLVGPNGAGKSTLLARMAGMTS   50 (231)
T ss_dssp             CTTTSCSEEEEEETT--CEEECBCCTTSSHHHHHHHHHTSCC
T ss_pred             cCceecCEEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCC
Confidence            345799999999999  9999999999999999999999653

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=98.86  E-value=3.5e-08  Score=80.06  Aligned_cols=25  Identities=20%  Similarity=0.154  Sum_probs=22.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhC
Q 038053           21 NGKRTVVLLGRTGNGKSATGNSILG   45 (231)
Q Consensus        21 g~~~~i~lvG~~g~GKSTLin~l~g   45 (231)
                      |...+|||.|+||||||||++.|+.
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~~   76 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFGM   76 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHHH
Confidence            3448999999999999999999983

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.82  E-value=4.7e-10  Score=86.40  Aligned_cols=59  Identities=27%  Similarity=0.327  Sum_probs=34.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccc-----cCCCC-cceeeeeeeEEeeCCcEEEEEeCCCCcCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKAS-----ADSSG-VTKTCEMKTTVLKDGQVVNVIDTPGLFDSS   87 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~-----~~~~~-~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~   87 (231)
                      ...+|+|++|+|||||+|+|.+......+     ...|- +|+.....  .. .  .++++||||+....
T Consensus        98 ~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~--~~-~--gg~iiDTPG~r~~~  162 (231)
T d1t9ha2          98 KTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELI--HT-S--GGLVADTPGFSSLE  162 (231)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEE--EE-T--TEEEESSCSCSSCC
T ss_pred             ceEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEE--ec-C--CCEEEECCcccccc
Confidence            58899999999999999999998643332     11222 23322222  12 3  36799999996543

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.76  E-value=3e-08  Score=73.46  Aligned_cols=82  Identities=17%  Similarity=0.077  Sum_probs=50.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCccee-eeeeeEEe-eCCcEEEEEeCCCCcCCCCCchHHHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKT-CEMKTTVL-KDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRI  101 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~-~~~~~~~~-~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~  101 (231)
                      .+|+|+|.+|||||||++.++...-.    .....|.. ........ .....+.+.|++|.......           .
T Consensus         3 ~KivliG~~~vGKTsli~r~~~~~f~----~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----------~   67 (179)
T d1m7ba_           3 CKIVVVGDSQCGKTALLHVFAKDCFP----ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNV-----------R   67 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCC----SSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTT-----------G
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCC----CccCCceeecccccccccceEEeecccccccccccccc-----------c
Confidence            58999999999999999988765431    11112221 11112222 12345668999996542211           1


Q ss_pred             hhhcCCccEEEEEEECCCC
Q 038053          102 GLAKGGIHAVLVVFSVRSR  120 (231)
Q Consensus       102 ~~~~~~~~~il~vvd~~~~  120 (231)
                      ...+..+|++++|+|+++.
T Consensus        68 ~~~~~~~~~~ilv~d~~~~   86 (179)
T d1m7ba_          68 PLSYPDSDAVLICFDISRP   86 (179)
T ss_dssp             GGGCTTCSEEEEEEETTCH
T ss_pred             cchhhhhhhhheeeecccC
Confidence            2345788999999999854

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=98.73  E-value=2.9e-08  Score=76.62  Aligned_cols=24  Identities=21%  Similarity=0.207  Sum_probs=21.2

Q ss_pred             chhhhhhhhHhhHHHHHHHHHHHH
Q 038053          155 EVDSLKEYSKQEISKLMGQMQESY  178 (231)
Q Consensus       155 ~i~~is~~~~~~i~~l~~~i~~~~  178 (231)
                      +++++|+++|+|+++|+..+.+.|
T Consensus       218 ~~v~vSa~~geGi~~L~~~l~e~~  241 (244)
T d1yrba1         218 RVLYLSAKTREGFEDLETLAYEHY  241 (244)
T ss_dssp             CCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            677899999999999999988765

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.62  E-value=3.4e-07  Score=73.94  Aligned_cols=27  Identities=7%  Similarity=0.191  Sum_probs=23.3

Q ss_pred             chhhhhhhhHhhHHHHHHHHHHHHHHH
Q 038053          155 EVDSLKEYSKQEISKLMGQMQESYEDQ  181 (231)
Q Consensus       155 ~i~~is~~~~~~i~~l~~~i~~~~~~~  181 (231)
                      +|..+|+.+++|++++...+.+.++..
T Consensus       232 ~V~~~Sa~~g~Gi~el~~~I~~~~~~~  258 (323)
T d2qm8a1         232 PVVTISGLHGKGLDSLWSRIEDHRSKL  258 (323)
T ss_dssp             CEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             ceEEEEecCCCCHHHHHHHHHHHHHHH
Confidence            788899999999999999998865433

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.61  E-value=3.2e-06  Score=67.16  Aligned_cols=26  Identities=23%  Similarity=0.468  Sum_probs=23.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAF   49 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~   49 (231)
                      +.|++||.-++|||||+|+|+|....
T Consensus        27 P~ivvvG~~SsGKSsliNaLlg~~~l   52 (299)
T d2akab1          27 PQIAVVGGQSAGKSSVLENFVGRDFL   52 (299)
T ss_dssp             CEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred             CeEEEEcCCCCCHHHHHHHHhCCCcC
Confidence            57999999999999999999998853

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.55  E-value=1.2e-06  Score=69.99  Aligned_cols=26  Identities=31%  Similarity=0.574  Sum_probs=23.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAF   49 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~   49 (231)
                      +.|++||..++|||||+|+|+|....
T Consensus        25 P~ivVvG~~ssGKSSliNaLlG~~~l   50 (306)
T d1jwyb_          25 PQIVVVGSQSSGKSSVLENIVGRDFL   50 (306)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHTSCCC
T ss_pred             CeEEEEeCCCCCHHHHHHHHhCCCCC
Confidence            47999999999999999999998753

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.53  E-value=9.9e-08  Score=77.60  Aligned_cols=93  Identities=23%  Similarity=0.322  Sum_probs=56.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh---CCCcccc-c----------cCCCCcceeeeeeeEEe---------------eCCcE
Q 038053           24 RTVVLLGRTGNGKSATGNSIL---GRKAFKA-S----------ADSSGVTKTCEMKTTVL---------------KDGQV   74 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~---g~~~~~~-~----------~~~~~~t~~~~~~~~~~---------------~~~~~   74 (231)
                      .+|+++|..++|||||+.+|+   |...... +          ...-+.|.........+               .+...
T Consensus        18 RNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~   97 (341)
T d1n0ua2          18 RNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFL   97 (341)
T ss_dssp             EEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEE
T ss_pred             cEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccceE
Confidence            469999999999999999996   3221100 0          00112333222222211               02345


Q ss_pred             EEEEeCCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCCCHHHHH
Q 038053           75 VNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRFSQEEEA  127 (231)
Q Consensus        75 ~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~~~~~~~  127 (231)
                      +.++||||..+..       .+...    ++..+|.+++|||+..++......
T Consensus        98 inliDtPGh~dF~-------~ev~~----al~~~D~allVVda~eGv~~qT~~  139 (341)
T d1n0ua2          98 INLIDSPGHVDFS-------SEVTA----ALRVTDGALVVVDTIEGVCVQTET  139 (341)
T ss_dssp             EEEECCCCCCSSC-------HHHHH----HHHTCSEEEEEEETTTBSCHHHHH
T ss_pred             EEEEcCCCcHHHH-------HHHHH----HHhhcCceEEEEecccCcchhHHH
Confidence            7899999987643       22322    334569999999999788777655

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.48  E-value=1.2e-07  Score=72.74  Aligned_cols=86  Identities=22%  Similarity=0.250  Sum_probs=54.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC---CCccc--------------------------cccCCCCcceeeeeeeEEeeCCcE
Q 038053           24 RTVVLLGRTGNGKSATGNSILG---RKAFK--------------------------ASADSSGVTKTCEMKTTVLKDGQV   74 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g---~~~~~--------------------------~~~~~~~~t~~~~~~~~~~~~~~~   74 (231)
                      .+|+++|.-++|||||+..|+.   .....                          ......+.|.........+ .+..
T Consensus         4 iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~-~~~~   82 (224)
T d1jnya3           4 LNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET-KKYF   82 (224)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC-SSCE
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEec-CCce
Confidence            6899999999999999988853   11100                          0011233444444444555 7788


Q ss_pred             EEEEeCCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCC
Q 038053           75 VNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRF  121 (231)
Q Consensus        75 ~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~  121 (231)
                      +.++||||-.+           +...+......+|..++|||+..++
T Consensus        83 i~iiDtPGH~d-----------f~~~~~~g~~~~D~allVVda~~G~  118 (224)
T d1jnya3          83 FTIIDAPGHRD-----------FVKNMITGASQADAAILVVSAKKGE  118 (224)
T ss_dssp             EEECCCSSSTT-----------HHHHHHHTSSCCSEEEEEEECSTTH
T ss_pred             eEEeeCCCcHH-----------HHHHHHHHHHhhceEEEEEecccCc
Confidence            99999999775           3334445567889999999998653

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.47  E-value=1.2e-07  Score=73.54  Aligned_cols=84  Identities=21%  Similarity=0.293  Sum_probs=59.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh---CCCcc-------------ccc-------------cCCCCcceeeeeeeEEeeCCcE
Q 038053           24 RTVVLLGRTGNGKSATGNSIL---GRKAF-------------KAS-------------ADSSGVTKTCEMKTTVLKDGQV   74 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~---g~~~~-------------~~~-------------~~~~~~t~~~~~~~~~~~~~~~   74 (231)
                      .+|+++|..++|||||+..|+   |....             ..+             ....++|.+.......+ .++.
T Consensus         7 iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~-~~~~   85 (239)
T d1f60a3           7 INVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET-PKYQ   85 (239)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC-SSEE
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEecc-CCEE
Confidence            689999999999999998884   32210             000             01235566555556666 7889


Q ss_pred             EEEEeCCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCC
Q 038053           75 VNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRS  119 (231)
Q Consensus        75 ~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~  119 (231)
                      +.++||||-.+           +..-+......+|.+++|||+..
T Consensus        86 i~iiDtPGH~d-----------f~~~~~~g~~~~D~ailvvda~~  119 (239)
T d1f60a3          86 VTVIDAPGHRD-----------FIKNMITGTSQADCAILIIAGGV  119 (239)
T ss_dssp             EEEEECCCCTT-----------HHHHHHHSSSCCSEEEEEEECSH
T ss_pred             EEEEECCCcHH-----------HHHHHHHHHHHhCEEEEEEECCC
Confidence            99999999876           33334456688999999999974

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.45  E-value=2e-07  Score=69.12  Aligned_cols=75  Identities=16%  Similarity=0.158  Sum_probs=50.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+|+|..|||||||++.+.....    +..+.     ....... ....+.+.||.|.....           .....
T Consensus         3 ~KivllG~~~vGKTsl~~r~~~~~~----~t~~~-----~~~~~~~-~~~~~~i~D~~Gq~~~~-----------~~~~~   61 (195)
T d1svsa1           3 VKLLLLGAGESGKSTIVKQMKIIHE----AGTGI-----VETHFTF-KDLHFKMFDVGGQRSER-----------KKWIH   61 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHS----CCCSE-----EEEEEEE-TTEEEEEEEECCSGGGG-----------GGGGG
T ss_pred             eEEEEECCCCCCHHHHHHHHhhCCC----CCccE-----EEEEEEe-eeeeeeeeccccccccc-----------cchhh
Confidence            5899999999999999999865433    22221     1122223 67778899999965421           11234


Q ss_pred             hcCCccEEEEEEECCC
Q 038053          104 AKGGIHAVLVVFSVRS  119 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~  119 (231)
                      .+..++++++++|.++
T Consensus        62 ~~~~~~~~i~v~d~~~   77 (195)
T d1svsa1          62 CFEGVTAIIFCVALSD   77 (195)
T ss_dssp             GCTTCSEEEEEEEGGG
T ss_pred             cccCCceeeeEEeecc
Confidence            4578899999999863

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.33  E-value=1.5e-07  Score=71.48  Aligned_cols=30  Identities=17%  Similarity=0.343  Sum_probs=25.1

Q ss_pred             ccCCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 038053           15 KPTSSSNGKRTVVLLGRTGNGKSATGNSIL   44 (231)
Q Consensus        15 ~~~i~~g~~~~i~lvG~~g~GKSTLin~l~   44 (231)
                      .+.+++..|..|+|+|+||+||||.+=-|+
T Consensus         3 ~l~~~~~~p~vi~lvGptGvGKTTTiAKLA   32 (213)
T d1vmaa2           3 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLA   32 (213)
T ss_dssp             CCCCCSSSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             cCcCCCCCCEEEEEECCCCCCHHHHHHHHH
Confidence            456677777999999999999999976665

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.31  E-value=1.3e-07  Score=69.31  Aligned_cols=25  Identities=24%  Similarity=0.432  Sum_probs=23.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCCcc
Q 038053           25 TVVLLGRTGNGKSATGNSILGRKAF   49 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~~~   49 (231)
                      +|+|+|+||||||||++.|+|...+
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~~   26 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLGK   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCCC
Confidence            6999999999999999999998764

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.28  E-value=6.6e-07  Score=69.48  Aligned_cols=85  Identities=20%  Similarity=0.257  Sum_probs=47.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHH---hCCCcccc-----------c---------------cCCCCcceeeeeeeEEeeCCcE
Q 038053           24 RTVVLLGRTGNGKSATGNSI---LGRKAFKA-----------S---------------ADSSGVTKTCEMKTTVLKDGQV   74 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l---~g~~~~~~-----------~---------------~~~~~~t~~~~~~~~~~~~~~~   74 (231)
                      ..|+++|.-++|||||+..|   +|......           +               ....+.|.........+ ....
T Consensus        25 iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~-~~~~  103 (245)
T d1r5ba3          25 VNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET-EHRR  103 (245)
T ss_dssp             EEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC-SSEE
T ss_pred             eEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccc-ccce
Confidence            46999999999999999998   34321100           0               01112233222233344 6778


Q ss_pred             EEEEeCCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCC
Q 038053           75 VNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSR  120 (231)
Q Consensus        75 ~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~  120 (231)
                      +.++||||-.+           +...+......+|.+++|||+..+
T Consensus       104 i~~iDtPGH~d-----------f~~~~~~g~~~aD~ailVVda~~G  138 (245)
T d1r5ba3         104 FSLLDAPGHKG-----------YVTNMINGASQADIGVLVISARRG  138 (245)
T ss_dssp             EEECCCCC----------------------TTSCSEEEEEEECSTT
T ss_pred             eeeeccccccc-----------chhhhhhhhhhhcceeeEEEcCCC
Confidence            99999999765           223333445788999999999754

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.23  E-value=1.7e-06  Score=64.26  Aligned_cols=77  Identities=18%  Similarity=0.156  Sum_probs=49.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+|+|.+|||||||++.+.    +..   ....|.......... ....+.+.|++|....           ......
T Consensus         3 iKivllG~~~vGKTsll~r~~----f~~---~~~pTiG~~~~~~~~-~~~~~~~~D~~gq~~~-----------~~~~~~   63 (200)
T d1zcba2           3 VKILLLGAGESGKSTFLKQMR----IIH---GQDPTKGIHEYDFEI-KNVPFKMVDVGGQRSE-----------RKRWFE   63 (200)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH----HHH---SCCCCSSEEEEEEEE-TTEEEEEEEECC------------------CTT
T ss_pred             EEEEEECCCCCCHHHHHHHHh----cCC---CCCCeeeeEEEEEee-eeeeeeeecccceeee-----------cccccc
Confidence            689999999999999999993    111   111133333333444 7788899999996531           122234


Q ss_pred             hcCCccEEEEEEECCC
Q 038053          104 AKGGIHAVLVVFSVRS  119 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~  119 (231)
                      ....++.++++++.++
T Consensus        64 ~~~~~~~~~~~~~~~~   79 (200)
T d1zcba2          64 CFDSVTSILFLVSSSE   79 (200)
T ss_dssp             SCTTCCEEEEEEETTC
T ss_pred             cccccceeEEEEEcCC
Confidence            4577889999999874

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.08  E-value=1.2e-06  Score=66.13  Aligned_cols=26  Identities=19%  Similarity=0.374  Sum_probs=21.4

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHh
Q 038053           19 SSNGKRTVVLLGRTGNGKSATGNSIL   44 (231)
Q Consensus        19 ~~g~~~~i~lvG~~g~GKSTLin~l~   44 (231)
                      ....|.+|+|+|+|||||||.+--|.
T Consensus         5 ~~~~p~vi~lvGptGvGKTTTiAKLA   30 (211)
T d2qy9a2           5 EGKAPFVILMVGVNGVGKTTTIGKLA   30 (211)
T ss_dssp             CSCTTEEEEEECCTTSCHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHH
Confidence            34445899999999999999997776

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.03  E-value=1.6e-06  Score=65.50  Aligned_cols=27  Identities=22%  Similarity=0.394  Sum_probs=17.7

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHh
Q 038053           18 SSSNGKRTVVLLGRTGNGKSATGNSIL   44 (231)
Q Consensus        18 i~~g~~~~i~lvG~~g~GKSTLin~l~   44 (231)
                      ++...|.+|+|+|++||||||.+=-|+
T Consensus         7 ~~~k~p~vi~lvGptGvGKTTTiAKLA   33 (211)
T d1j8yf2           7 IPDKIPYVIMLVGVQGTGKATTAGKLA   33 (211)
T ss_dssp             SCSSSSEEEEEECSCCC----HHHHHH
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHH
Confidence            344455899999999999999986665

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.01  E-value=2.9e-06  Score=63.88  Aligned_cols=49  Identities=18%  Similarity=0.157  Sum_probs=30.5

Q ss_pred             CcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh---h-cCCccEEEEEEECCCCCCH
Q 038053           72 GQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL---A-KGGIHAVLVVFSVRSRFSQ  123 (231)
Q Consensus        72 ~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~il~vvd~~~~~~~  123 (231)
                      +..++++||||..+..   ..+..++......   . ...++.+++|++++.+...
T Consensus        88 ~~d~ilIDTaGr~~~d---~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~  140 (207)
T d1okkd2          88 GYDLLFVDTAGRLHTK---HNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNG  140 (207)
T ss_dssp             TCSEEEECCCCCCTTC---HHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHH
T ss_pred             CCCEEEcCccccchhh---HHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchH
Confidence            4567899999977533   3444444333221   1 2467899999999854433

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=1.8e-05  Score=62.13  Aligned_cols=67  Identities=28%  Similarity=0.313  Sum_probs=43.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCCc-cccccCCCCcceeeeeeeEE--eeCCcEEEEEeCCCCcCCC
Q 038053           21 NGKRTVVLLGRTGNGKSATGNSILGRKA-FKASADSSGVTKTCEMKTTV--LKDGQVVNVIDTPGLFDSS   87 (231)
Q Consensus        21 g~~~~i~lvG~~g~GKSTLin~l~g~~~-~~~~~~~~~~t~~~~~~~~~--~~~~~~~~l~Dtpg~~~~~   87 (231)
                      ++...|+++|+.++|||||+|.|+|... +..+.....+|...-.....  ......++++||.|+.+..
T Consensus        30 ~~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~~~   99 (277)
T d1f5na2          30 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVE   99 (277)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGG
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEecccccccc
Confidence            3446899999999999999999999763 32333333344332211111  1135578899999998643

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.98  E-value=7.2e-06  Score=60.59  Aligned_cols=78  Identities=13%  Similarity=0.115  Sum_probs=52.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+++|..|||||||++.+..... ..     ..|.......... ....+.+.|++|.....           .....
T Consensus         3 ~Kiv~lG~~~vGKTsll~r~~~~~~-~~-----~pTiG~~~~~~~~-~~~~~~~~d~~g~~~~~-----------~~~~~   64 (200)
T d2bcjq2           3 LKLLLLGTGESGKSTFIKQMRIIHG-SG-----VPTTGIIEYPFDL-QSVIFRMVDVGGQRSER-----------RKWIH   64 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTS-SC-----CCCCSCEEEEEEC-SSCEEEEEECCCSTTGG-----------GGGGG
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCC-CC-----CceeeEEEEEEec-cceeeeecccccccccc-----------ccccc
Confidence            6899999999999999999965542 11     1222222222333 66778899999976422           11223


Q ss_pred             hcCCccEEEEEEECCC
Q 038053          104 AKGGIHAVLVVFSVRS  119 (231)
Q Consensus       104 ~~~~~~~il~vvd~~~  119 (231)
                      .+..++.++++++.++
T Consensus        65 ~~~~~~~~i~~~~~~~   80 (200)
T d2bcjq2          65 CFENVTSIMFLVALSE   80 (200)
T ss_dssp             GCSSCSEEEEEEEGGG
T ss_pred             cccccceeeEeeeccc
Confidence            4578899999999874

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.91  E-value=1.1e-05  Score=61.21  Aligned_cols=75  Identities=17%  Similarity=0.118  Sum_probs=50.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      .+|+|+|.+|||||||++.+.....    ..    |.......... .+..+.+.|+.|.......           -..
T Consensus         7 ~KilllG~~~vGKTsll~~~~~~~~----~p----TiG~~~~~~~~-~~~~~~~~D~~Gq~~~r~~-----------w~~   66 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMRILHV----VL----TSGIFETKFQV-DKVNFHMFDVGGQRDERRK-----------WIQ   66 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHC----CC----CCSCEEEEEEE-TTEEEEEEECCCSTTTTTG-----------GGG
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCc----CC----CCCeEEEEEEE-CcEEEEEEecCccceeccc-----------hhh
Confidence            6899999999999999999853321    11    21112222333 6778889999997642211           123


Q ss_pred             hcCCccEEEEEEECC
Q 038053          104 AKGGIHAVLVVFSVR  118 (231)
Q Consensus       104 ~~~~~~~il~vvd~~  118 (231)
                      ....++.++++++.+
T Consensus        67 ~~~~~~~ii~v~d~s   81 (221)
T d1azta2          67 CFNDVTAIIFVVASS   81 (221)
T ss_dssp             GCTTCSEEEEEEETT
T ss_pred             hcccccceEEEEEcc
Confidence            457889999999987

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.87  E-value=3.4e-06  Score=60.73  Aligned_cols=23  Identities=13%  Similarity=0.270  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      +.|+|+|++|||||||++.|...
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~~   25 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIPA   25 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            58999999999999999999853

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.82  E-value=6.8e-06  Score=61.85  Aligned_cols=45  Identities=20%  Similarity=0.230  Sum_probs=30.2

Q ss_pred             CcEEEEEeCCCCcCCCCCchHHHHHHHHHHhhhcCCccEEEEEEECCCCC
Q 038053           72 GQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGLAKGGIHAVLVVFSVRSRF  121 (231)
Q Consensus        72 ~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vvd~~~~~  121 (231)
                      +..++++||||..+..   .....++......  ..++.+++|++++.+.
T Consensus        92 ~~d~vlIDTaGr~~~d---~~~~~el~~~~~~--~~~~~~llv~~a~~~~  136 (207)
T d1ls1a2          92 ARDLILVDTAGRLQID---EPLMGELARLKEV--LGPDEVLLVLDAMTGQ  136 (207)
T ss_dssp             TCCEEEEECCCCSSCC---HHHHHHHHHHHHH--HCCSEEEEEEEGGGTH
T ss_pred             cCcceeecccccchhh---hhhHHHHHHHHhh--cCCceEEEEeccccch
Confidence            4567899999987632   4445555554433  3568999999987443

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.78  E-value=4.9e-06  Score=60.55  Aligned_cols=24  Identities=33%  Similarity=0.425  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      .+|+|+|++|||||||.+.|....
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~~   31 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            689999999999999999998654

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.77  E-value=7.2e-06  Score=61.21  Aligned_cols=26  Identities=15%  Similarity=0.241  Sum_probs=22.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           22 GKRTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        22 ~~~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      +|..|+++|.||||||||.+.|+...
T Consensus         1 ~p~li~l~GlpgsGKSTla~~L~~~l   26 (213)
T d1bifa1           1 CPTLIVMVGLPARGKTYISKKLTRYL   26 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            36889999999999999999998543

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.71  E-value=1e-05  Score=58.36  Aligned_cols=27  Identities=19%  Similarity=0.401  Sum_probs=23.4

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           19 SSNGKRTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        19 ~~g~~~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      |++  .+|+|.|+|||||||+.+.|....
T Consensus         3 pk~--~~I~i~G~~GsGKTT~~~~La~~l   29 (174)
T d1y63a_           3 PKG--INILITGTPGTGKTSMAEMIAAEL   29 (174)
T ss_dssp             CSS--CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCC--CEEEEEeCCCCCHHHHHHHHHHHh
Confidence            445  799999999999999999998653

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.71  E-value=1.1e-05  Score=59.37  Aligned_cols=29  Identities=17%  Similarity=0.281  Sum_probs=24.4

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 038053           18 SSSNGKRTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        18 i~~g~~~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      +.+.++..|||.|++|||||||.+.|...
T Consensus        17 ~~~~~~~iIgI~G~~GSGKSTla~~L~~~   45 (198)
T d1rz3a_          17 IKTAGRLVLGIDGLSRSGKTTLANQLSQT   45 (198)
T ss_dssp             SCCSSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             ccCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            44555689999999999999999999754

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.65  E-value=1.4e-05  Score=57.72  Aligned_cols=23  Identities=13%  Similarity=0.179  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      ..|+++|++|||||||++.|...
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~   24 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAA   24 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHH
Confidence            47899999999999999988764

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.64  E-value=1.5e-05  Score=58.74  Aligned_cols=26  Identities=27%  Similarity=0.432  Sum_probs=22.9

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 038053           19 SSNGKRTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        19 ~~g~~~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      |+|  .+|+|+|+|||||||+.+.|+..
T Consensus         1 p~~--~riil~G~pGSGKsT~a~~La~~   26 (190)
T d1ak2a1           1 PKG--VRAVLLGPPGAGKGTQAPKLAKN   26 (190)
T ss_dssp             CCC--CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCc--cEEEEECCCCCCHHHHHHHHHHH
Confidence            466  89999999999999999999843

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.62  E-value=1.8e-05  Score=55.92  Aligned_cols=22  Identities=23%  Similarity=0.530  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 038053           24 RTVVLLGRTGNGKSATGNSILG   45 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g   45 (231)
                      ..|.|.|+||||||||.+.|..
T Consensus         3 klIii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5788999999999999998854

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.61  E-value=1.3e-05  Score=57.70  Aligned_cols=23  Identities=26%  Similarity=0.595  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      .+|+|+|+|||||||+.+.|+..
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~~   27 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELASK   27 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999754

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.58  E-value=1.8e-05  Score=57.95  Aligned_cols=24  Identities=38%  Similarity=0.432  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      ..|+|+||+|||||||++.|....
T Consensus         3 ~iivl~GpsG~GK~tl~~~L~~~~   26 (182)
T d1znwa1           3 RVVVLSGPSAVGKSTVVRCLRERI   26 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhC
Confidence            789999999999999999998654

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=1.2e-05  Score=58.95  Aligned_cols=24  Identities=33%  Similarity=0.670  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      ..|+|+||+|+|||||++.|+...
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhC
Confidence            469999999999999999998653

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.58  E-value=1.5e-05  Score=58.78  Aligned_cols=25  Identities=20%  Similarity=0.262  Sum_probs=22.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      |.+|.|+|+|||||||+.+.|+...
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4789999999999999999997654

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.56  E-value=2.7e-05  Score=57.74  Aligned_cols=81  Identities=16%  Similarity=0.137  Sum_probs=49.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      ..+.|||+||+|||+++..|........   .+ ...          .+..++.+|...+..+......+...+...+..
T Consensus        44 ~n~lLvG~pGVGKTalv~~LA~ri~~~~---vp-~~L----------~~~~i~~ld~~~LiAg~~~rG~~E~rl~~il~e  109 (195)
T d1jbka_          44 NNPVLIGEPGVGKTAIVEGLAQRIINGE---VP-EGL----------KGRRVLALDMGALVAGAKYRGEFEERLKGVLND  109 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHHTC---SC-GGG----------TTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHH
T ss_pred             CCeEEEecCCcccHHHHHHHHHHHHhCC---CC-HHH----------cCceEEEeeHHHHhccCCccHHHHHHHHHHHHH
Confidence            5899999999999999999887654211   01 011          456677888777665544333444445444443


Q ss_pred             hcCC-ccEEEEEEECC
Q 038053          104 AKGG-IHAVLVVFSVR  118 (231)
Q Consensus       104 ~~~~-~~~il~vvd~~  118 (231)
                      .... .++|+++-++.
T Consensus       110 ~~~~~~~iILfIDeih  125 (195)
T d1jbka_         110 LAKQEGNVILFIDELH  125 (195)
T ss_dssp             HHHSTTTEEEEEETGG
T ss_pred             HhcCCCcEEEEcchHH
Confidence            3233 35566665554

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.55  E-value=2.1e-05  Score=58.13  Aligned_cols=25  Identities=28%  Similarity=0.468  Sum_probs=22.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCC
Q 038053           22 GKRTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        22 ~~~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      .|.+|+|+|+|||||||+.+.|+..
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~~   29 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3479999999999999999999864

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.55  E-value=2.5e-05  Score=56.33  Aligned_cols=27  Identities=22%  Similarity=0.278  Sum_probs=23.5

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           19 SSNGKRTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        19 ~~g~~~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      ..|  .+|.|+|.|||||||+.+.|....
T Consensus         4 ~~g--~~I~l~G~~GsGKTTia~~La~~L   30 (183)
T d1m8pa3           4 TQG--FTIFLTGYMNSGKDAIARALQVTL   30 (183)
T ss_dssp             TCC--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCC--eEEEEECCCCCCHHHHHHHHHHHH
Confidence            356  899999999999999999998654

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.55  E-value=9.6e-06  Score=60.97  Aligned_cols=24  Identities=21%  Similarity=0.331  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      ..|+|+||+|||||||++.|+...
T Consensus         3 ~livi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           3 TLYIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhC
Confidence            789999999999999999998654

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.53  E-value=2.4e-05  Score=56.11  Aligned_cols=24  Identities=25%  Similarity=0.429  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      ..|.|.|+|||||||+.+.|....
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~   26 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQL   26 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHc
Confidence            579999999999999999998653

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.52  E-value=2.8e-05  Score=55.99  Aligned_cols=24  Identities=25%  Similarity=0.469  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      ..|+|+|+|||||||+.+.|....
T Consensus         5 ~iI~l~G~~GsGKSTia~~La~~l   28 (176)
T d1zp6a1           5 NILLLSGHPGSGKSTIAEALANLP   28 (176)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTCS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            789999999999999999998764

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.51  E-value=3.3e-05  Score=55.43  Aligned_cols=24  Identities=33%  Similarity=0.537  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      ..|+|+|+|||||||+.+.|....
T Consensus         7 ~iivl~G~~GsGKsT~a~~La~~l   30 (171)
T d1knqa_           7 HIYVLMGVSGSGKSAVASEVAHQL   30 (171)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            789999999999999999998653

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.48  E-value=0.00013  Score=56.73  Aligned_cols=78  Identities=13%  Similarity=0.112  Sum_probs=43.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCcCCCCCchHHHHHHHHHHhh
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDSSAGSEFVGKEIVKRIGL  103 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~~~~~~~~~~~~~~~~~~~~  103 (231)
                      ..+.|||+||+|||+++..|.........   + ...          .+..++.+|...+..+......+...+...+..
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~ri~~~~v---p-~~l----------~~~~i~~l~~~~liag~~~~g~~e~r~~~i~~~  105 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAWRIVQGDV---P-EVM----------ADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQ  105 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHTCS---C-GGG----------TTCEEEECCCC---CCCCCSSCHHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHHHHHhCCc---c-ccc----------ccceeEEeeechHhccCccchhHHHHHHHHHHH
Confidence            57999999999999999998876542110   0 000          345566677766665544444444444444443


Q ss_pred             hcCCccEEEEEEE
Q 038053          104 AKGGIHAVLVVFS  116 (231)
Q Consensus       104 ~~~~~~~il~vvd  116 (231)
                      . ...+.+++++|
T Consensus       106 ~-~~~~~iIlfiD  117 (268)
T d1r6bx2         106 L-EQDTNSILFID  117 (268)
T ss_dssp             H-SSSSCEEEEET
T ss_pred             h-hccCCceEEec
Confidence            3 33344455555

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=3.7e-05  Score=56.65  Aligned_cols=25  Identities=28%  Similarity=0.433  Sum_probs=22.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      |.+|.|+|+|||||||..+.|+...
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~   25 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKY   25 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            4799999999999999999997643

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.44  E-value=3.4e-05  Score=54.65  Aligned_cols=24  Identities=33%  Similarity=0.621  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      ..|.|+|++||||||+.+.|....
T Consensus         3 k~I~l~G~~GsGKSTvak~La~~L   26 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQQL   26 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            469999999999999999997654

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.42  E-value=3e-05  Score=55.84  Aligned_cols=24  Identities=33%  Similarity=0.515  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      ++|+|+|.+||||||+.+.|....
T Consensus         2 p~IvliG~~G~GKSTig~~La~~l   25 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAKAL   25 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHh
Confidence            468899999999999999997543

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.41  E-value=6.1e-05  Score=54.76  Aligned_cols=24  Identities=33%  Similarity=0.308  Sum_probs=21.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCC
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      +..|.++|.|||||||+.+.++..
T Consensus        14 p~liil~G~pGsGKST~a~~l~~~   37 (172)
T d1yj5a2          14 PEVVVAVGFPGAGKSTFIQEHLVS   37 (172)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHTGG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHh
Confidence            489999999999999999988654

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.40  E-value=6e-05  Score=55.65  Aligned_cols=26  Identities=19%  Similarity=0.400  Sum_probs=23.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      ..+|+|+|+|||||||+...|+....
T Consensus         8 ~~iI~i~GppGSGKsT~a~~La~~~g   33 (196)
T d1ukza_           8 VSVIFVLGGPGAGKGTQCEKLVKDYS   33 (196)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            47999999999999999999987543

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=4.6e-05  Score=57.08  Aligned_cols=25  Identities=24%  Similarity=0.223  Sum_probs=22.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCC
Q 038053           22 GKRTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        22 ~~~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      .|..|||-|++|||||||.+.|...
T Consensus         1 ~P~iIgI~G~~gSGKSTla~~L~~~   25 (213)
T d1uj2a_           1 EPFLIGVSGGTASGKSSVCAKIVQL   25 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3689999999999999999988654

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.38  E-value=4.5e-05  Score=55.47  Aligned_cols=23  Identities=30%  Similarity=0.569  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCC
Q 038053           25 TVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      +|+|+|+|||||||+.+.|+...
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999996543

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.38  E-value=4.9e-05  Score=55.07  Aligned_cols=23  Identities=22%  Similarity=0.447  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      ..|+|.|++||||||+.+.|...
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~   24 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDN   24 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999999654

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=4.3e-05  Score=55.19  Aligned_cols=24  Identities=29%  Similarity=0.285  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      ..|.|.|+||+|||||+..++...
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l   25 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHH
Confidence            468999999999999999998664

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.31  E-value=6.6e-05  Score=53.85  Aligned_cols=24  Identities=25%  Similarity=0.349  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      ..|.|.|++||||||+.+.|....
T Consensus         4 kiI~l~G~~GsGKsTva~~L~~~l   27 (178)
T d1qhxa_           4 RMIILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHc
Confidence            578899999999999999998764

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.30  E-value=6.3e-05  Score=54.90  Aligned_cols=23  Identities=30%  Similarity=0.631  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCC
Q 038053           25 TVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      +|.|+|+|||||||+.+.|+...
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999998664

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.29  E-value=6.1e-05  Score=55.35  Aligned_cols=22  Identities=27%  Similarity=0.499  Sum_probs=19.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCC
Q 038053           26 VVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        26 i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      |+|+||+|||||||++.|+...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~   25 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            7899999999999999997654

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.29  E-value=5.8e-05  Score=54.12  Aligned_cols=23  Identities=26%  Similarity=0.485  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCC
Q 038053           25 TVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      .|+|+|++||||||+.+.|....
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~l   24 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKDL   24 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHHh
Confidence            48999999999999999997654

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=4.2e-05  Score=56.07  Aligned_cols=24  Identities=29%  Similarity=0.314  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      ..|.|+|.|||||||+.+.|.-..
T Consensus        20 ~vI~L~G~pGSGKTTiAk~La~~l   43 (195)
T d1x6va3          20 CTVWLTGLSGAGKTTVSMALEEYL   43 (195)
T ss_dssp             EEEEEESSCHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHH
Confidence            789999999999999999997543

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=97.24  E-value=2.2e-06  Score=63.45  Aligned_cols=28  Identities=25%  Similarity=0.238  Sum_probs=22.1

Q ss_pred             cccCCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 038053           14 WKPTSSSNGKRTVVLLGRTGNGKSATGNSIL   44 (231)
Q Consensus        14 ~~~~i~~g~~~~i~lvG~~g~GKSTLin~l~   44 (231)
                      ..+.+.+|   ..+|+|+|||||||++.+|.
T Consensus        18 ~~i~f~~~---~tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          18 RTFDLDEL---VTTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             EEECHHHH---HHHHHSCCSHHHHHHHHHHH
T ss_pred             EEEEcCCC---eEEEECCCCCCHHHHHHHHH
Confidence            34444444   78899999999999999985

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.23  E-value=8.8e-05  Score=54.00  Aligned_cols=23  Identities=30%  Similarity=0.518  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCC
Q 038053           25 TVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      +|+|+|+|||||||+.+.|+...
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            79999999999999999997553

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.22  E-value=8.4e-05  Score=53.63  Aligned_cols=23  Identities=17%  Similarity=0.484  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      ..|.|+|++||||||+.+.|+..
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~~   25 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELARA   25 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCEEEECCCCCCHHHHHHHHHHH
Confidence            35789999999999999999644

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.22  E-value=0.00011  Score=54.03  Aligned_cols=24  Identities=21%  Similarity=0.387  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      .+|+|+|+|||||||+...|+...
T Consensus         7 mrIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           7 LRAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHB
T ss_pred             eeEEEECCCCCCHHHHHHHHHHHH
Confidence            799999999999999999998654

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.21  E-value=9.4e-05  Score=54.55  Aligned_cols=25  Identities=20%  Similarity=0.505  Sum_probs=22.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      .+|.|+|+|||||||+.+.|+....
T Consensus         9 ~iI~l~G~pGSGKsT~a~~La~~~g   33 (194)
T d3adka_           9 KIIFVVGGPGSGKGTQCEKIVQKYG   33 (194)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHTC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhC
Confidence            7899999999999999999976543

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.20  E-value=0.00011  Score=53.52  Aligned_cols=23  Identities=30%  Similarity=0.547  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      .+|.|+|+|||||||+.+.|+..
T Consensus         3 mrIvl~G~pGSGKtT~a~~La~~   25 (180)
T d1akya1           3 IRMVLIGPPGAGKGTQAPNLQER   25 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999999754

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.20  E-value=8.8e-05  Score=53.88  Aligned_cols=22  Identities=27%  Similarity=0.522  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q 038053           25 TVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      +|+|+|+|||||||..+.|+..
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~   23 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEK   23 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7899999999999999999754

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.16  E-value=0.0001  Score=54.37  Aligned_cols=21  Identities=38%  Similarity=0.544  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhCC
Q 038053           26 VVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        26 i~lvG~~g~GKSTLin~l~g~   46 (231)
                      |+|+||+|||||||++.|...
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999998754

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.14  E-value=8.4e-05  Score=57.34  Aligned_cols=24  Identities=25%  Similarity=0.493  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      ..|.|.|+||||||||.++|++..
T Consensus        33 ~~ilL~GpPGtGKT~la~~la~~~   56 (273)
T d1gvnb_          33 TAFLLGGQPGSGKTSLRSAIFEET   56 (273)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHh
Confidence            569999999999999999998764

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.14  E-value=0.0002  Score=57.31  Aligned_cols=25  Identities=32%  Similarity=0.469  Sum_probs=22.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      ..|.++|++|||||||+|+|++...
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i~  191 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFIP  191 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred             CCEEEEeeccccchHHHHHHhhhcc
Confidence            4699999999999999999998765

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.12  E-value=0.00013  Score=52.99  Aligned_cols=24  Identities=21%  Similarity=0.207  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      .+|+|.|.+||||||+.+.|....
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L   25 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEIL   25 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHH
Confidence            467889999999999999997543

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.09  E-value=0.00012  Score=57.73  Aligned_cols=19  Identities=32%  Similarity=0.567  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 038053           25 TVVLLGRTGNGKSATGNSI   43 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l   43 (231)
                      ..+|+|+|||||||++.+|
T Consensus        26 lnvlvG~NgsGKS~iL~Ai   44 (308)
T d1e69a_          26 VTAIVGPNGSGKSNIIDAI   44 (308)
T ss_dssp             EEEEECCTTTCSTHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHH
Confidence            7799999999999999888

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=97.08  E-value=0.00024  Score=58.13  Aligned_cols=25  Identities=32%  Similarity=0.469  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      ..+.|||+||+|||+++..|.-...
T Consensus        44 ~n~llvG~~GvGKtaiv~~la~~i~   68 (387)
T d1qvra2          44 NNPVLIGEPGVGKTAIVEGLAQRIV   68 (387)
T ss_dssp             CCCEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCCeEECCCCCCHHHHHHHHHHHHH
Confidence            4689999999999999987775543

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=97.06  E-value=0.00015  Score=53.19  Aligned_cols=23  Identities=22%  Similarity=0.338  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhC
Q 038053           23 KRTVVLLGRTGNGKSATGNSILG   45 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g   45 (231)
                      |.+|||.|.+||||||+.+.|..
T Consensus         3 p~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            58999999999999999998853

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.92  E-value=0.00018  Score=54.68  Aligned_cols=24  Identities=25%  Similarity=0.419  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      ..+.|.||||+|||||+++|++..
T Consensus        36 ~~~Ll~GPpG~GKTtla~~la~~~   59 (239)
T d1ixsb2          36 EHLLLFGPPGLGKTTLAHVIAHEL   59 (239)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            568999999999999999999754

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.90  E-value=0.00028  Score=52.62  Aligned_cols=25  Identities=16%  Similarity=0.288  Sum_probs=22.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      ++|+|.|||||||||+-..|.....
T Consensus         4 piI~I~GppGSGKgT~ak~La~~~g   28 (225)
T d1ckea_           4 PVITIDGPSGAGKGTLCKAMAEALQ   28 (225)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhC
Confidence            5899999999999999999987654

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.87  E-value=0.00028  Score=57.74  Aligned_cols=21  Identities=29%  Similarity=0.464  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 038053           24 RTVVLLGRTGNGKSATGNSIL   44 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~   44 (231)
                      ...+|+|+|||||||++.+|+
T Consensus        26 ~l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          26 NFTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             SEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            367899999999999999983

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.86  E-value=0.00024  Score=52.12  Aligned_cols=25  Identities=32%  Similarity=0.340  Sum_probs=22.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      |..|+|-|..||||||+++.|....
T Consensus         9 p~~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1           9 PFTVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             CEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh
Confidence            3799999999999999999997654

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.77  E-value=0.00037  Score=55.18  Aligned_cols=25  Identities=20%  Similarity=0.206  Sum_probs=21.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCC
Q 038053           22 GKRTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        22 ~~~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      .|..|||.|.+|||||||.+.|...
T Consensus        79 ~P~iIGIaG~sgSGKSTla~~L~~l  103 (308)
T d1sq5a_          79 IPYIISIAGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCCCcHHHHHHHHH
Confidence            4589999999999999998888654

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.73  E-value=0.00039  Score=52.62  Aligned_cols=25  Identities=28%  Similarity=0.383  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      ..+.|.||||+||||+.++|+....
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~~~   60 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASELQ   60 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCcHHHHHHHHHhccC
Confidence            4688999999999999999987644

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.72  E-value=0.00055  Score=52.11  Aligned_cols=25  Identities=24%  Similarity=0.383  Sum_probs=22.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      ...+.|.||||+||||++++|+...
T Consensus        52 ~~~lll~GPpG~GKTt~a~~la~~~   76 (253)
T d1sxja2          52 FRAAMLYGPPGIGKTTAAHLVAQEL   76 (253)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHH
Confidence            3579999999999999999999864

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.63  E-value=0.00065  Score=50.65  Aligned_cols=26  Identities=23%  Similarity=0.272  Sum_probs=22.7

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 038053           19 SSNGKRTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        19 ~~g~~~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      .+|  .+|-|.|.||||||||.+.|...
T Consensus        22 ~kg--~vIwltGlsGsGKTTia~~L~~~   47 (208)
T d1m7ga_          22 QRG--LTIWLTGLSASGKSTLAVELEHQ   47 (208)
T ss_dssp             SSC--EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCC--eEEEEECCCCCCHHHHHHHHHHH
Confidence            455  89999999999999999999754

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.63  E-value=0.00059  Score=50.88  Aligned_cols=25  Identities=20%  Similarity=0.240  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      .+|+|-|||||||||+...|+.+..
T Consensus         4 i~IaIdGp~GsGKgT~ak~La~~lg   28 (223)
T d1q3ta_           4 IQIAIDGPASSGKSTVAKIIAKDFG   28 (223)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            5789999999999999999987654

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.63  E-value=0.00049  Score=54.55  Aligned_cols=23  Identities=22%  Similarity=0.521  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      ..|.|+||||||||.|.++|+..
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHhhc
Confidence            46889999999999999999865

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.61  E-value=0.00077  Score=52.71  Aligned_cols=27  Identities=26%  Similarity=0.322  Sum_probs=22.2

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCC
Q 038053           20 SNGKRTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        20 ~g~~~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      ...|..|||-|.+|||||||.+.|...
T Consensus        24 ~~~P~iIGi~G~qGSGKSTl~~~l~~~   50 (286)
T d1odfa_          24 NKCPLFIFFSGPQGSGKSFTSIQIYNH   50 (286)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEeECCCCCCHHHHHHHHHHH
Confidence            334689999999999999999877543

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.60  E-value=0.00067  Score=52.27  Aligned_cols=24  Identities=29%  Similarity=0.624  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      .-+.|.||||+|||+|+++|+...
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~~~   69 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAGEA   69 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEeeCCCCCCccHHHHHHHHHc
Confidence            458999999999999999999653

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.55  E-value=0.0008  Score=51.33  Aligned_cols=25  Identities=32%  Similarity=0.405  Sum_probs=21.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      +..+.|.|++|+||||+++.|+...
T Consensus        43 ~~~lll~GppGtGKT~l~~~l~~~l   67 (276)
T d1fnna2          43 YPRATLLGRPGTGKTVTLRKLWELY   67 (276)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHH
Confidence            3589999999999999999998653

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.53  E-value=0.00077  Score=49.98  Aligned_cols=23  Identities=30%  Similarity=0.382  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhC
Q 038053           23 KRTVVLLGRTGNGKSATGNSILG   45 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g   45 (231)
                      ...|||.|..||||||+.+.|-.
T Consensus         2 ~~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           2 TYIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999998863

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.53  E-value=0.0007  Score=51.85  Aligned_cols=24  Identities=29%  Similarity=0.368  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      .-|.|.||||+|||+|.++|++..
T Consensus        41 ~~vLL~GppGtGKT~la~alA~~~   64 (246)
T d1d2na_          41 VSVLLEGPPHSGKTALAAKIAEES   64 (246)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHhhcc
Confidence            569999999999999999998653

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.53  E-value=0.00078  Score=50.67  Aligned_cols=24  Identities=17%  Similarity=0.326  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      ..+.|.|+||+|||||+++|+...
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak~l   69 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALAREL   69 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHH
Confidence            568999999999999999998653

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.52  E-value=0.0004  Score=52.35  Aligned_cols=29  Identities=21%  Similarity=0.284  Sum_probs=22.9

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 038053           18 SSSNGKRTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        18 i~~g~~~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      +..+....+.|.|++|+|||||++.|+..
T Consensus        28 i~~~~~~~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          28 LKSANLPHMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             TTCTTCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHcCCCCeEEEECCCCCChHHHHHHHHHH
Confidence            33443356889999999999999999865

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.51  E-value=0.00083  Score=49.93  Aligned_cols=22  Identities=36%  Similarity=0.519  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 038053           24 RTVVLLGRTGNGKSATGNSILG   45 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g   45 (231)
                      ..|||.|.+||||||+.+.|..
T Consensus         4 ~iIgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCcCCHHHHHHHHHH
Confidence            5899999999999999998863

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.34  E-value=0.0012  Score=49.24  Aligned_cols=25  Identities=24%  Similarity=0.347  Sum_probs=21.6

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhCC
Q 038053           20 SNGKRTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        20 ~g~~~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      .|  ..|+|-|..||||||+++.|...
T Consensus         2 rG--~lI~ieG~dGsGKsT~~~~L~~~   26 (209)
T d1nn5a_           2 RG--ALIVLEGVDRAGKSTQSRKLVEA   26 (209)
T ss_dssp             CC--CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             Ce--eEEEEECCCCCCHHHHHHHHHHH
Confidence            46  78999999999999998887654

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.32  E-value=0.0012  Score=49.01  Aligned_cols=23  Identities=26%  Similarity=0.524  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      ..|+|-|..||||||+++.|...
T Consensus         3 kfIviEG~dGsGKsT~~~~L~~~   25 (210)
T d4tmka_           3 KYIVIEGLEGAGKTTARNVVVET   25 (210)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            78999999999999999998753

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.31  E-value=0.00092  Score=49.03  Aligned_cols=27  Identities=11%  Similarity=0.199  Sum_probs=23.2

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 038053           18 SSSNGKRTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        18 i~~g~~~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      +++|  ..+.|.|+||+|||||...++..
T Consensus        20 i~~G--~v~~i~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          20 IETG--SITEMFGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             EETT--SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcCC--EEEEEEeCCCCCHHHHHHHHHHH
Confidence            5677  89999999999999999777654

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.28  E-value=0.005  Score=43.52  Aligned_cols=61  Identities=21%  Similarity=0.250  Sum_probs=38.8

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCCccccccCCCCcceeeeeeeEEeeCCcEEEEEeCCCCc
Q 038053           18 SSSNGKRTVVLLGRTGNGKSATGNSILGRKAFKASADSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF   84 (231)
Q Consensus        18 i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtpg~~   84 (231)
                      ..+|  ..|+|-|.=|||||||.+.++........+.+|..+....+.   . .+..++=+|.--+.
T Consensus        30 ~~~g--~ii~L~G~LGaGKTtfvr~~~~~lg~~~~V~SPTF~l~~~Y~---~-~~~~i~H~DlYRl~   90 (158)
T d1htwa_          30 TEKA--IMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLVEEYN---I-AGKMIYHFDLYRLA   90 (158)
T ss_dssp             CSSC--EEEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTTCEEEEE---E-TTEEEEEEECTTCS
T ss_pred             CCCC--eEEEEecCCCccHHHHHHHHHhhcccccccCCCceEEEEeec---c-CCceEEEEEEeccC
Confidence            4567  899999999999999999988654332224455555433221   1 44455567754443

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.22  E-value=0.0014  Score=50.04  Aligned_cols=24  Identities=29%  Similarity=0.589  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      .-|.|.|+||+|||+|.++|+...
T Consensus        43 ~giLl~GppGtGKT~la~aia~~~   66 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAGEA   66 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ceEEEecCCCCChhHHHHHHHHHc
Confidence            349999999999999999999754

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.15  E-value=0.0015  Score=47.98  Aligned_cols=22  Identities=23%  Similarity=0.397  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q 038053           25 TVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      .|+|-|.-||||||+++.|...
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~   23 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGA   23 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998754

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.14  E-value=0.0019  Score=49.57  Aligned_cols=24  Identities=25%  Similarity=0.551  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      .-|.|.||||+|||+|+++++...
T Consensus        39 ~giLL~GppGtGKT~l~~ala~~~   62 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVANET   62 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ceeEEecCCCCCchHHHHHHHHHh
Confidence            348999999999999999999864

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.13  E-value=0.0014  Score=50.68  Aligned_cols=24  Identities=25%  Similarity=0.437  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      .-|.|.|+||+|||+|+++|++..
T Consensus        42 ~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          42 KGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCcchhHHHHHHHHh
Confidence            469999999999999999999865

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.13  E-value=0.00083  Score=52.52  Aligned_cols=22  Identities=18%  Similarity=0.341  Sum_probs=17.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 038053           24 RTVVLLGRTGNGKSATGNSILG   45 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g   45 (231)
                      .+||+.|.+||||||+.+.|..
T Consensus         5 pIIgIaG~SGSGKTTva~~l~~   26 (288)
T d1a7ja_           5 PIISVTGSSGAGTSTVKHTFDQ   26 (288)
T ss_dssp             CEEEEESCC---CCTHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHHH
Confidence            6899999999999999998754

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.12  E-value=0.0017  Score=48.98  Aligned_cols=25  Identities=24%  Similarity=0.294  Sum_probs=22.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCC
Q 038053           22 GKRTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        22 ~~~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      +|..|+|=|.-||||||+++.|...
T Consensus         1 ~pk~IviEG~~GsGKST~~~~L~~~   25 (241)
T d2ocpa1           1 GPRRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH
Confidence            3689999999999999999999854

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.10  E-value=0.00042  Score=52.04  Aligned_cols=23  Identities=17%  Similarity=0.364  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      ..+.|.|++|+||||+.+.|+..
T Consensus        37 ~~~ll~Gp~G~GKTt~a~~la~~   59 (224)
T d1sxjb2          37 PHMIISGMPGIGKTTSVHCLAHE   59 (224)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCchhhHHHHHHH
Confidence            46889999999999999988754

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.10  E-value=0.00096  Score=51.16  Aligned_cols=22  Identities=27%  Similarity=0.359  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCC
Q 038053           26 VVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        26 i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      +.|.|+||+||||+++.++...
T Consensus        49 l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHHH
Confidence            4556999999999999998764

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.09  E-value=0.0015  Score=49.74  Aligned_cols=22  Identities=23%  Similarity=0.237  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 038053           24 RTVVLLGRTGNGKSATGNSILG   45 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g   45 (231)
                      ..|+|.|++|+|||||++.++.
T Consensus        30 ~~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          30 PITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Confidence            5889999999999999998864

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=96.03  E-value=0.0017  Score=52.49  Aligned_cols=30  Identities=17%  Similarity=0.240  Sum_probs=25.1

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053           17 TSSSNGKRTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus        17 ~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      .+++.  ..+.|.||||+|||+|.++|++...
T Consensus       150 ~~~~~--~~~~~~g~~~~gk~~~~~~~~~~~~  179 (362)
T d1svma_         150 NIPKK--RYWLFKGPIDSGKTTLAAALLELCG  179 (362)
T ss_dssp             CCTTC--CEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CCCCc--CeEEEECCCCCCHHHHHHHHHHHcC
Confidence            44565  7899999999999999999987643

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.93  E-value=0.0019  Score=52.98  Aligned_cols=25  Identities=32%  Similarity=0.353  Sum_probs=22.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      ..|.+.|++||||||++.+++....
T Consensus       159 GliLvtGpTGSGKSTTl~~~l~~~~  183 (401)
T d1p9ra_         159 GIILVTGPTGSGKSTTLYAGLQELN  183 (401)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             ceEEEEcCCCCCccHHHHHHhhhhc
Confidence            4899999999999999999987643

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.91  E-value=0.0023  Score=48.43  Aligned_cols=23  Identities=26%  Similarity=0.475  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      ..+.|.|++|+||||++++++..
T Consensus        34 ~~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          34 PHLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHh
Confidence            45889999999999999998764

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.90  E-value=0.0016  Score=48.96  Aligned_cols=24  Identities=21%  Similarity=0.213  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      ..|+|-|+-||||||+++.|....
T Consensus         3 k~I~ieG~dGsGKST~~~~L~~~l   26 (241)
T d1p5zb_           3 KKISIEGNIAAGKSTFVNILKQLC   26 (241)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            789999999999999999998754

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.90  E-value=0.0023  Score=47.73  Aligned_cols=23  Identities=22%  Similarity=0.401  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      ..+.|.|++|+||||++.+|+..
T Consensus        36 ~~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          36 PHLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChhHHHHHHHHH
Confidence            45889999999999999999864

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.87  E-value=0.0018  Score=48.57  Aligned_cols=24  Identities=29%  Similarity=0.353  Sum_probs=21.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhCC
Q 038053           23 KRTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        23 ~~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      .+.+.|-|.-|||||||+|.|+..
T Consensus         3 iPv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           3 IAVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CCEEEEeeCCCCCHHHHHHHHHhc
Confidence            368899999999999999999864

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.73  E-value=0.0021  Score=48.13  Aligned_cols=28  Identities=18%  Similarity=0.183  Sum_probs=23.6

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           18 SSSNGKRTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        18 i~~g~~~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      +++|  ..+.|.|+||+|||||.-.++-..
T Consensus        31 i~~G--~~~li~G~pGsGKT~l~lq~~~~~   58 (251)
T d1szpa2          31 VETG--SITELFGEFRTGKSQLCHTLAVTC   58 (251)
T ss_dssp             EESS--SEEEEEESTTSSHHHHHHHHTTTT
T ss_pred             CcCC--eEEEEEcCCCCCHHHHHHHHHHHh
Confidence            6677  899999999999999997776443

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.65  E-value=0.0016  Score=54.18  Aligned_cols=24  Identities=21%  Similarity=0.494  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      .+|.+|||||||||-|.++|.+..
T Consensus        50 sNILliGPTGvGKTlLAr~LAk~l   73 (443)
T d1g41a_          50 KNILMIGPTGVGKTEIARRLAKLA   73 (443)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ccEEEECCCCCCHHHHHHHHHHHh
Confidence            479999999999999999998753

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.64  E-value=0.0035  Score=47.16  Aligned_cols=23  Identities=26%  Similarity=0.463  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      .+|||.|..||||||+.+.|...
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~   24 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSN   24 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            58999999999999999999643

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.61  E-value=0.0037  Score=46.52  Aligned_cols=23  Identities=17%  Similarity=0.385  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      ..|+|-|.-||||||+++.|...
T Consensus         4 k~I~iEG~DGsGKST~~~~L~~~   26 (214)
T d1tmka_           4 KLILIEGLDRTGKTTQCNILYKK   26 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCcHHHHHHHHHHH
Confidence            89999999999999999998754

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=95.40  E-value=0.0049  Score=47.31  Aligned_cols=27  Identities=15%  Similarity=0.171  Sum_probs=22.3

Q ss_pred             cCCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 038053           16 PTSSSNGKRTVVLLGRTGNGKSATGNSIL   44 (231)
Q Consensus        16 ~~i~~g~~~~i~lvG~~g~GKSTLin~l~   44 (231)
                      .-+.+|  ..+.|.|+||+|||||+.-|+
T Consensus        30 ~G~~~G--~l~vi~G~~G~GKT~~~~~la   56 (277)
T d1cr2a_          30 LGARGG--EVIMVTSGSGMGKSTFVRQQA   56 (277)
T ss_dssp             CSBCTT--CEEEEECSTTSSHHHHHHHHH
T ss_pred             cCCCCC--eEEEEEeCCCCCHHHHHHHHH
Confidence            346778  899999999999999975554

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.30  E-value=0.0039  Score=46.89  Aligned_cols=25  Identities=16%  Similarity=0.377  Sum_probs=21.4

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHh
Q 038053           18 SSSNGKRTVVLLGRTGNGKSATGNSIL   44 (231)
Q Consensus        18 i~~g~~~~i~lvG~~g~GKSTLin~l~   44 (231)
                      +++|  ..+.|.|+||+|||||.--++
T Consensus        33 lp~G--~~~li~G~pGsGKT~~~lq~~   57 (254)
T d1pzna2          33 IETQ--AITEVFGEFGSGKTQLAHTLA   57 (254)
T ss_dssp             EESS--EEEEEEESTTSSHHHHHHHHH
T ss_pred             ccCC--EEEEEEcCCCCCHHHHHHHHH
Confidence            5678  899999999999999986554

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.26  E-value=0.0063  Score=45.64  Aligned_cols=27  Identities=15%  Similarity=0.128  Sum_probs=23.4

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHhC
Q 038053           17 TSSSNGKRTVVLLGRTGNGKSATGNSILG   45 (231)
Q Consensus        17 ~i~~g~~~~i~lvG~~g~GKSTLin~l~g   45 (231)
                      -+++|  ..+.|.|+||+|||+|.-.++.
T Consensus        33 Gip~G--~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          33 GIESM--AITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             SBCSS--EEEEEECCTTCTHHHHHHHHHH
T ss_pred             CCcCC--EEEEEECCCCCCHHHHHHHHHH
Confidence            47788  8999999999999999876653

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.25  E-value=0.0041  Score=46.65  Aligned_cols=27  Identities=19%  Similarity=0.278  Sum_probs=22.8

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 038053           18 SSSNGKRTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        18 i~~g~~~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      +++|  ..+.|.|+||+|||+|.-.++-.
T Consensus        23 i~~g--sl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          23 FFKD--SIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             EESS--CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CcCC--eEEEEEeCCCCCHHHHHHHHHHH
Confidence            5677  89999999999999999766544

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.20  E-value=0.0056  Score=44.07  Aligned_cols=22  Identities=32%  Similarity=0.477  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 038053           24 RTVVLLGRTGNGKSATGNSILG   45 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g   45 (231)
                      .-|.|.|++|+|||||.-.|..
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~   36 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQ   36 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEEeCCCCCHHHHHHHHHH
Confidence            5799999999999999977764

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=95.17  E-value=0.0065  Score=47.24  Aligned_cols=30  Identities=10%  Similarity=0.091  Sum_probs=24.9

Q ss_pred             cCCCCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           16 PTSSSNGKRTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        16 ~~i~~g~~~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      +++-.|  .+++|+|.+|+|||||+..|+...
T Consensus        38 ~PigrG--Qr~~I~g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          38 SPIGRG--QRGLIVAPPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             SCCBTT--CEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             ccccCC--CeeeEeCCCCCCHHHHHHHHHHHH
Confidence            345567  999999999999999998887643

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.16  E-value=0.0088  Score=47.17  Aligned_cols=23  Identities=22%  Similarity=0.335  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      ..+.|+||+|+|||.|.+.|+..
T Consensus        53 ~~~lf~Gp~GvGKT~lak~la~~   75 (315)
T d1r6bx3          53 GSFLFAGPTGVGKTEVTVQLSKA   75 (315)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCcchhHHHHHHHHhh
Confidence            47999999999999999998754

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.16  E-value=0.0073  Score=45.59  Aligned_cols=21  Identities=24%  Similarity=0.311  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 038053           24 RTVVLLGRTGNGKSATGNSIL   44 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~   44 (231)
                      ..+.|-|+|.+||||+++.+.
T Consensus        42 ~~~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          42 RMLIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEeccCchhhHHHHHHHH
Confidence            578899999999999999875

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.13  E-value=0.0049  Score=45.98  Aligned_cols=26  Identities=19%  Similarity=0.148  Sum_probs=22.3

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhC
Q 038053           18 SSSNGKRTVVLLGRTGNGKSATGNSILG   45 (231)
Q Consensus        18 i~~g~~~~i~lvG~~g~GKSTLin~l~g   45 (231)
                      ++.|  ..+.|.|+||+|||+|.-.++-
T Consensus        31 l~~G--~l~~i~G~~G~GKT~~~l~~a~   56 (258)
T d2i1qa2          31 LESQ--SVTEFAGVFGSGKTQIMHQSCV   56 (258)
T ss_dssp             EETT--EEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccCC--eEEEEEeCCCCCHHHHHHHHHH
Confidence            6678  8999999999999999866653

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=95.12  E-value=0.0058  Score=44.88  Aligned_cols=28  Identities=25%  Similarity=0.320  Sum_probs=23.6

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           18 SSSNGKRTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        18 i~~g~~~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      +++-  ..++|.||+++|||++.++|+...
T Consensus        50 ~PKk--n~i~~~GP~~TGKS~f~~sl~~~l   77 (205)
T d1tuea_          50 TPKK--NCLVFCGPANTGKSYFGMSFIHFI   77 (205)
T ss_dssp             CTTC--SEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCCc--eEEEEECCCCccHHHHHHHHHHHh
Confidence            4555  799999999999999999887664

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.02  E-value=0.0052  Score=45.54  Aligned_cols=25  Identities=20%  Similarity=0.337  Sum_probs=21.2

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHH
Q 038053           17 TSSSNGKRTVVLLGRTGNGKSATGNSI   43 (231)
Q Consensus        17 ~i~~g~~~~i~lvG~~g~GKSTLin~l   43 (231)
                      -+++|  ..+.|.|+||+|||+|.-.+
T Consensus        22 Gi~~G--~~~~I~G~~G~GKT~la~~~   46 (242)
T d1tf7a1          22 GLPIG--RSTLVSGTSGTGKTLFSIQF   46 (242)
T ss_dssp             SEETT--SEEEEEESTTSSHHHHHHHH
T ss_pred             CCcCC--eEEEEEeCCCCCHHHHHHHH
Confidence            36788  89999999999999997543

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=95.01  E-value=0.0071  Score=48.74  Aligned_cols=23  Identities=26%  Similarity=0.595  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      ..+.++||+|||||-|.++|+..
T Consensus        69 ~niLfiGPTGvGKTElAk~LA~~   91 (364)
T d1um8a_          69 SNILLIGPTGSGKTLMAQTLAKH   91 (364)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             cceeeeCCCCccHHHHHHHHHhh
Confidence            37999999999999999998754

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.99  E-value=0.0065  Score=45.13  Aligned_cols=23  Identities=17%  Similarity=0.304  Sum_probs=20.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhCCCc
Q 038053           26 VVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus        26 i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      +.|.|++|+|||.|+++++....
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~~   61 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEAK   61 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHhc
Confidence            78999999999999999987643

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=94.85  E-value=0.0041  Score=49.33  Aligned_cols=22  Identities=27%  Similarity=0.508  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 038053           24 RTVVLLGRTGNGKSATGNSILG   45 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g   45 (231)
                      -.|.|+|+||+|||||+++|.+
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHH
T ss_pred             CeEEEECCCCccHHHHHHHHHH
Confidence            3699999999999999999875

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=94.73  E-value=0.01  Score=42.67  Aligned_cols=23  Identities=35%  Similarity=0.575  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      .-|.|.|++|+|||||.-.|...
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~   38 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINK   38 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHc
Confidence            67999999999999999887643

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=94.40  E-value=0.0072  Score=47.79  Aligned_cols=23  Identities=17%  Similarity=0.293  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCCC
Q 038053           25 TVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      .+.+.|+||+|||.|.++|.+..
T Consensus       125 ~~l~~G~pG~GKT~la~ala~~~  147 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALGEAL  147 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHHHh
Confidence            55668999999999999999874

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.26  E-value=0.015  Score=44.81  Aligned_cols=23  Identities=35%  Similarity=0.543  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      ..|+|.|..|.|||||...+...
T Consensus        45 ~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          45 FFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            68999999999999999988754

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=94.25  E-value=0.016  Score=41.34  Aligned_cols=23  Identities=35%  Similarity=0.531  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      .-|.|.|++|+|||||.-.|...
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHc
Confidence            67999999999999998776544

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=94.15  E-value=0.011  Score=48.31  Aligned_cols=22  Identities=32%  Similarity=0.409  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhC
Q 038053           24 RTVVLLGRTGNGKSATGNSILG   45 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g   45 (231)
                      ..+.++|.+|+|||++++.|+-
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHHH
Confidence            5799999999999999987753

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=94.11  E-value=0.018  Score=44.15  Aligned_cols=24  Identities=25%  Similarity=0.382  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      ..+.|.|++++|||+|+++|+...
T Consensus       105 n~~~l~G~~~tGKS~f~~~i~~~l  128 (267)
T d1u0ja_         105 NTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHh
Confidence            689999999999999999988754

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=94.01  E-value=0.018  Score=42.95  Aligned_cols=21  Identities=24%  Similarity=0.207  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 038053           24 RTVVLLGRTGNGKSATGNSIL   44 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~   44 (231)
                      ..+.|-|+|.+||||+++.+.
T Consensus        36 ~~~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          36 ELVLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             CEEEEESCSSSSHHHHHHHHH
T ss_pred             cEEEEECCCccccchhhhhhH
Confidence            368899999999999999765

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.85  E-value=0.019  Score=43.08  Aligned_cols=22  Identities=18%  Similarity=0.332  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q 038053           25 TVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      .+.|.|++|+||||+.+.++..
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~~   57 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAKG   57 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4789999999999999987644

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.82  E-value=0.02  Score=42.07  Aligned_cols=22  Identities=14%  Similarity=0.154  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Q 038053           25 TVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      -+.|.|++|+||||+.+.++..
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~~   47 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSRY   47 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHh
Confidence            5999999999999999977653

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=93.74  E-value=0.019  Score=43.65  Aligned_cols=23  Identities=22%  Similarity=0.261  Sum_probs=19.6

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHh
Q 038053           20 SNGKRTVVLLGRTGNGKSATGNSIL   44 (231)
Q Consensus        20 ~g~~~~i~lvG~~g~GKSTLin~l~   44 (231)
                      +|  ..+.|.|++|+|||||+-.|+
T Consensus        28 pg--~~~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          28 AG--TVGALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             TT--SEEEEEESTTSSHHHHHHHHH
T ss_pred             CC--cEEEEEeCCCCCHHHHHHHHH
Confidence            46  688899999999999986654

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.86  E-value=0.037  Score=36.93  Aligned_cols=26  Identities=12%  Similarity=0.107  Sum_probs=22.5

Q ss_pred             CCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 038053           19 SSNGKRTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        19 ~~g~~~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      ..|  +.|.|-|-+|+||||+.++|.-.
T Consensus         4 kqg--f~i~~tg~~~~gk~~ia~al~~~   29 (122)
T d1g8fa3           4 KQG--FSIVLGNSLTVSREQLSIALLST   29 (122)
T ss_dssp             GCC--EEEEECTTCCSCHHHHHHHHHHH
T ss_pred             ccc--eEEEEeCCCCCCHHHHHHHHHHH
Confidence            356  89999999999999999999544

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=92.85  E-value=0.032  Score=43.79  Aligned_cols=23  Identities=26%  Similarity=0.518  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      ..+.|+|++|+|||.|.+.|+..
T Consensus        54 ~~~lf~Gp~G~GKt~lak~la~~   76 (315)
T d1qvra3          54 GSFLFLGPTGVGKTELAKTLAAT   76 (315)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHH
T ss_pred             eEEEEECCCcchHHHHHHHHHHH
Confidence            37889999999999999887643

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=92.69  E-value=0.025  Score=44.80  Aligned_cols=25  Identities=28%  Similarity=0.333  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      .+|+|=|.-||||||+++.|.....
T Consensus         6 lrI~IEG~iGsGKSTl~~~L~~~l~   30 (331)
T d1osna_           6 LRIYLDGAYGIGKTTAAEEFLHHFA   30 (331)
T ss_dssp             EEEEEEESSSSCTTHHHHHHHHTTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHh
Confidence            5899999999999999999986643

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=92.58  E-value=0.029  Score=44.34  Aligned_cols=23  Identities=26%  Similarity=0.339  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCC
Q 038053           24 RTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      .+|+|=|+-||||||+++.|...
T Consensus         5 lrI~IEG~iGsGKTTl~~~La~~   27 (329)
T d1e2ka_           5 LRVYIDGPHGMGKTTTTQLLVAL   27 (329)
T ss_dssp             EEEEECSCTTSSHHHHHHHHTC-
T ss_pred             eEEEEECCcCCCHHHHHHHHHHH
Confidence            57999999999999999999754

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=92.37  E-value=0.025  Score=43.52  Aligned_cols=19  Identities=32%  Similarity=0.517  Sum_probs=14.9

Q ss_pred             EEEEEcCCCCCHHHHH-HHH
Q 038053           25 TVVLLGRTGNGKSATG-NSI   43 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLi-n~l   43 (231)
                      -+.|+|.+|+||||++ +.+
T Consensus        16 ~~lI~g~aGTGKTt~l~~rv   35 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVITNKI   35 (306)
T ss_dssp             EEEECCCTTSCHHHHHHHHH
T ss_pred             CEEEEeeCCccHHHHHHHHH
Confidence            4678899999999764 544

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=92.34  E-value=0.042  Score=43.46  Aligned_cols=25  Identities=32%  Similarity=0.389  Sum_probs=22.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053           24 RTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      .+|.|=|.-|+||||+++.|.....
T Consensus         7 ~rI~iEG~iGsGKSTl~~~L~~~l~   31 (333)
T d1p6xa_           7 VRIYLDGVYGIGKSTTGRVMASAAS   31 (333)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHSGGG
T ss_pred             EEEEEECCccCCHHHHHHHHHHHhc
Confidence            6899999999999999999987643

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.25  E-value=0.053  Score=41.52  Aligned_cols=26  Identities=15%  Similarity=0.299  Sum_probs=21.5

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 038053           17 TSSSNGKRTVVLLGRTGNGKSATGNSIL   44 (231)
Q Consensus        17 ~i~~g~~~~i~lvG~~g~GKSTLin~l~   44 (231)
                      -++.|  ..+-|.|++|+|||||.=.++
T Consensus        56 G~~~g--~i~e~~G~~~~GKT~l~l~~~   81 (269)
T d1mo6a1          56 GLPRG--RVIEIYGPESSGKTTVALHAV   81 (269)
T ss_dssp             SBCSS--SEEEEECSSSSSHHHHHHHHH
T ss_pred             Ccccc--eeEEEecCCCcHHHHHHHHHH
Confidence            45667  899999999999999975554

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.23  E-value=0.037  Score=42.54  Aligned_cols=26  Identities=19%  Similarity=0.316  Sum_probs=21.6

Q ss_pred             CCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 038053           17 TSSSNGKRTVVLLGRTGNGKSATGNSIL   44 (231)
Q Consensus        17 ~i~~g~~~~i~lvG~~g~GKSTLin~l~   44 (231)
                      ++-.|  .+++|+|.+|+|||||+-.|+
T Consensus        64 pigkG--Qr~~If~~~g~GKt~l~~~i~   89 (276)
T d2jdid3          64 PYAKG--GKIGLFGGAGVGKTVLIMELI   89 (276)
T ss_dssp             CEETT--CEEEEEECTTSSHHHHHHHHH
T ss_pred             cccCC--CEEEeeCCCCCCHHHHHHHHH
Confidence            34467  899999999999999976664

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=91.79  E-value=0.034  Score=43.10  Aligned_cols=16  Identities=19%  Similarity=0.484  Sum_probs=13.6

Q ss_pred             EEEEEcCCCCCHHHHH
Q 038053           25 TVVLLGRTGNGKSATG   40 (231)
Q Consensus        25 ~i~lvG~~g~GKSTLi   40 (231)
                      .+.|.|++|+||||.+
T Consensus        26 ~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             CEEEEECTTSCHHHHH
T ss_pred             CEEEEecCCccHHHHH
Confidence            4778899999999765

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=91.60  E-value=0.047  Score=41.67  Aligned_cols=28  Identities=18%  Similarity=0.296  Sum_probs=22.0

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCC
Q 038053           18 SSSNGKRTVVLLGRTGNGKSATGNSILGRK   47 (231)
Q Consensus        18 i~~g~~~~i~lvG~~g~GKSTLin~l~g~~   47 (231)
                      ++.|  ..+.|.|+||+|||||.=.++...
T Consensus        51 i~~g--~itei~G~~gsGKTtl~l~~~~~~   78 (263)
T d1u94a1          51 LPMG--RIVEIYGPESSGKTTLTLQVIAAA   78 (263)
T ss_dssp             EETT--SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ccCc--eEEEEecCCCcHHHHHHHHHHHHH
Confidence            3456  799999999999999986555443

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=90.97  E-value=0.069  Score=42.62  Aligned_cols=19  Identities=37%  Similarity=0.543  Sum_probs=16.5

Q ss_pred             eEEEEEcCCCCCHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNS   42 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~   42 (231)
                      ....|.|+||+||||++..
T Consensus       164 ~~~vI~G~pGTGKTt~i~~  182 (359)
T d1w36d1         164 RISVISGGPGTGKTTTVAK  182 (359)
T ss_dssp             SEEEEECCTTSTHHHHHHH
T ss_pred             CeEEEEcCCCCCceehHHH
Confidence            5889999999999998743

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.53  E-value=0.065  Score=41.35  Aligned_cols=27  Identities=11%  Similarity=0.270  Sum_probs=21.7

Q ss_pred             cCCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 038053           16 PTSSSNGKRTVVLLGRTGNGKSATGNSIL   44 (231)
Q Consensus        16 ~~i~~g~~~~i~lvG~~g~GKSTLin~l~   44 (231)
                      +++-.|  .+++|+|.+|+|||+|+-.+.
T Consensus        63 ~pig~G--Qr~~If~~~g~GKt~ll~~~~   89 (285)
T d2jdia3          63 VPIGRG--QRELIIGDRQTGKTSIAIDTI   89 (285)
T ss_dssp             SCCBTT--CBCEEEESTTSSHHHHHHHHH
T ss_pred             cCccCC--CEEEeecCCCCChHHHHHHHH
Confidence            345567  899999999999999975443

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=90.25  E-value=0.069  Score=35.52  Aligned_cols=21  Identities=29%  Similarity=0.158  Sum_probs=16.7

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHH
Q 038053           18 SSSNGKRTVVLLGRTGNGKSATG   40 (231)
Q Consensus        18 i~~g~~~~i~lvG~~g~GKSTLi   40 (231)
                      +.+|  ..+.|.+++|+|||..+
T Consensus         4 l~~~--~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           4 LKKG--MTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             TSTT--CEEEECCCTTSSTTTTH
T ss_pred             HHcC--CcEEEEcCCCCChhHHH
Confidence            3567  78899999999999443

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=90.15  E-value=0.065  Score=41.13  Aligned_cols=25  Identities=16%  Similarity=0.331  Sum_probs=20.8

Q ss_pred             cCCCCCCceEEEEEcCCCCCHHHHHHH
Q 038053           16 PTSSSNGKRTVVLLGRTGNGKSATGNS   42 (231)
Q Consensus        16 ~~i~~g~~~~i~lvG~~g~GKSTLin~   42 (231)
                      +++-.|  .+++|+|.+|+|||+|+-.
T Consensus        62 ~pig~G--Qr~~Ifg~~g~GKt~l~~~   86 (276)
T d1fx0a3          62 IPVGRG--QRELIIGDRQTGKTAVATD   86 (276)
T ss_dssp             SCCBTT--CBCBEEESSSSSHHHHHHH
T ss_pred             ccccCC--ceEeeccCCCCChHHHHHH
Confidence            345567  8999999999999999854

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=89.66  E-value=0.081  Score=40.39  Aligned_cols=29  Identities=17%  Similarity=0.307  Sum_probs=23.5

Q ss_pred             CCCCCceEEEEEcCCCCCHHHHHHHHhCCCc
Q 038053           18 SSSNGKRTVVLLGRTGNGKSATGNSILGRKA   48 (231)
Q Consensus        18 i~~g~~~~i~lvG~~g~GKSTLin~l~g~~~   48 (231)
                      ++.|  ..+-+.|++++|||||.-.++....
T Consensus        54 ip~g--~itei~G~~~sGKT~l~l~~~~~aq   82 (268)
T d1xp8a1          54 IPRG--RITEIYGPESGGKTTLALAIVAQAQ   82 (268)
T ss_dssp             EETT--SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             ccCc--eEEEEecCCccchHHHHHHHHHHHH
Confidence            4566  7999999999999999977776543

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=89.06  E-value=0.11  Score=34.87  Aligned_cols=20  Identities=30%  Similarity=0.336  Sum_probs=16.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSI   43 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l   43 (231)
                      ....|.+++|+|||+++-.+
T Consensus         9 ~~~ll~apTGsGKT~~~~~~   28 (136)
T d1a1va1           9 QVAHLHAPTGSGKSTKVPAA   28 (136)
T ss_dssp             EEEEEECCTTSCTTTHHHHH
T ss_pred             CEEEEEeCCCCCHHHHHHHH
Confidence            56678999999999988544

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=87.19  E-value=0.17  Score=37.88  Aligned_cols=21  Identities=29%  Similarity=0.452  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 038053           24 RTVVLLGRTGNGKSATGNSIL   44 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l~   44 (231)
                      .-|.|.|++|+||+++.+.|-
T Consensus        24 ~pvlI~Ge~GtGK~~~A~~ih   44 (247)
T d1ny5a2          24 CPVLITGESGVGKEVVARLIH   44 (247)
T ss_dssp             SCEEEECSTTSSHHHHHHHHH
T ss_pred             CCEEEECCCCcCHHHHHHHHH
Confidence            458899999999999999995

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=87.06  E-value=0.21  Score=37.88  Aligned_cols=23  Identities=17%  Similarity=0.248  Sum_probs=18.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHh
Q 038053           22 GKRTVVLLGRTGNGKSATGNSIL   44 (231)
Q Consensus        22 ~~~~i~lvG~~g~GKSTLin~l~   44 (231)
                      .+..|.+.|+-|+||||+--.|.
T Consensus         7 ~p~~i~~sGKGGVGKTTvaa~lA   29 (296)
T d1ihua1           7 IPPYLFFTGKGGVGKTSISCATA   29 (296)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCcChHHHHHHHHH
Confidence            45788899999999999765544

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=86.47  E-value=0.23  Score=37.29  Aligned_cols=20  Identities=40%  Similarity=0.690  Sum_probs=17.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 038053           24 RTVVLLGRTGNGKSATGNSI   43 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLin~l   43 (231)
                      .+|++.|+-|+||||+.=.|
T Consensus         2 r~Iai~gKGGvGKTT~a~nL   21 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNL   21 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHH
T ss_pred             CEEEEECCCcCCHHHHHHHH
Confidence            57999999999999998433

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=86.27  E-value=0.15  Score=36.88  Aligned_cols=25  Identities=4%  Similarity=-0.049  Sum_probs=21.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhCC
Q 038053           22 GKRTVVLLGRTGNGKSATGNSILGR   46 (231)
Q Consensus        22 ~~~~i~lvG~~g~GKSTLin~l~g~   46 (231)
                      .+..+.|-|++|+||||+...+...
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~   38 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEY   38 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            3478999999999999999887753

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=85.81  E-value=0.22  Score=38.61  Aligned_cols=17  Identities=29%  Similarity=0.612  Sum_probs=15.1

Q ss_pred             eEEEEEcCCCCCHHHHH
Q 038053           24 RTVVLLGRTGNGKSATG   40 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLi   40 (231)
                      ..-++.|-+|+|||||-
T Consensus        15 ~~alfFGLSGTGKTTLs   31 (313)
T d2olra1          15 DVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             CEEEEECSTTSSHHHHH
T ss_pred             CEEEEEccCCCCcccce
Confidence            67789999999999965

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=85.02  E-value=0.24  Score=38.55  Aligned_cols=17  Identities=29%  Similarity=0.612  Sum_probs=15.2

Q ss_pred             eEEEEEcCCCCCHHHHH
Q 038053           24 RTVVLLGRTGNGKSATG   40 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLi   40 (231)
                      ..-.+.|-+|+|||||-
T Consensus        15 ~valffGLSGTGKTTLs   31 (318)
T d1j3ba1          15 DVAVFFGLSGTGKTTLS   31 (318)
T ss_dssp             CEEEEEECTTSCHHHHT
T ss_pred             CEEEEEccCCCCccccc
Confidence            67899999999999964

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=84.76  E-value=0.63  Score=35.08  Aligned_cols=80  Identities=13%  Similarity=0.154  Sum_probs=47.6

Q ss_pred             HHHhhhcCCccEEEEEEECCCCCCHHHHH---hcCCCCcHHHHHHHHHhhH--------HHHHhhccchhhhhhhhHhhH
Q 038053           99 KRIGLAKGGIHAVLVVFSVRSRFSQEEEA---ANGGQPYTDEFLAELKRGA--------TELRDQQAEVDSLKEYSKQEI  167 (231)
Q Consensus        99 ~~~~~~~~~~~~il~vvd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~i~~is~~~~~~i  167 (231)
                      +.+...++.+|+|++|+|+.++++..+..   ....++.+ .++|+.|.-.        +.+.........+++.++.+.
T Consensus         7 r~i~~~i~~~DvIl~V~DaR~P~ss~~~~l~~~~~~Kp~I-lVlNK~DLv~~~~~~~w~~~f~~~~~~~i~isa~~~~~~   85 (273)
T d1puja_           7 REVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRI-MLLNKADKADAAVTQQWKEHFENQGIRSLSINSVNGQGL   85 (273)
T ss_dssp             HHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHCSSSCEE-EEEECGGGSCHHHHHHHHHHHHTTTCCEEECCTTTCTTG
T ss_pred             HHHHHHHHhCCEEEEEEECCCCCCCCCHHHHHHHcCCCeE-EEEECccCCchHHHHHHHHHHHhcCCccceeecccCCCc
Confidence            34455678889999999998777765443   33345554 3344444110        122222235667888888777


Q ss_pred             HHHHHHHHHHHH
Q 038053          168 SKLMGQMQESYE  179 (231)
Q Consensus       168 ~~l~~~i~~~~~  179 (231)
                      ..+...+.....
T Consensus        86 ~~~~~~~~~~l~   97 (273)
T d1puja_          86 NQIVPASKEILQ   97 (273)
T ss_dssp             GGHHHHHHHHHH
T ss_pred             cccchhhhhhhh
Confidence            776666555443

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=84.28  E-value=0.3  Score=38.03  Aligned_cols=17  Identities=29%  Similarity=0.610  Sum_probs=15.3

Q ss_pred             eEEEEEcCCCCCHHHHH
Q 038053           24 RTVVLLGRTGNGKSATG   40 (231)
Q Consensus        24 ~~i~lvG~~g~GKSTLi   40 (231)
                      ..-.+.|-+|+|||||-
T Consensus        15 d~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          15 DVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             CEEEEECCTTSSHHHHH
T ss_pred             CEEEEEccCCCCcccce
Confidence            57789999999999986

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=82.13  E-value=0.51  Score=35.34  Aligned_cols=22  Identities=27%  Similarity=0.579  Sum_probs=17.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHH
Q 038053           22 GKRTVVLLGRTGNGKSATGNSI   43 (231)
Q Consensus        22 ~~~~i~lvG~~g~GKSTLin~l   43 (231)
                      ....|.+.|+-|+||||+-=.|
T Consensus        19 ~~~iii~sGKGGVGKTT~a~nL   40 (279)
T d1ihua2          19 EHGLIMLMGKGGVGKTTMAAAI   40 (279)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHH
Confidence            3478888899999999975444

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=80.90  E-value=0.24  Score=37.66  Aligned_cols=19  Identities=21%  Similarity=0.295  Sum_probs=15.9

Q ss_pred             CCCCCceEEEEEcCCCCCHHH
Q 038053           18 SSSNGKRTVVLLGRTGNGKSA   38 (231)
Q Consensus        18 i~~g~~~~i~lvG~~g~GKST   38 (231)
                      +.+|  ..+.+.+++|+|||+
T Consensus         6 ~~~~--~~~lv~~~TGsGKT~   24 (305)
T d2bmfa2           6 FRKK--RLTIMDLHPGAGKTK   24 (305)
T ss_dssp             SSTT--CEEEECCCTTSSTTT
T ss_pred             hhcC--CcEEEEECCCCCHHH
Confidence            3466  788999999999996

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=80.58  E-value=0.54  Score=33.51  Aligned_cols=22  Identities=18%  Similarity=0.348  Sum_probs=17.9

Q ss_pred             eEEEEEcCC-CCCHHHHHHHHhC
Q 038053           24 RTVVLLGRT-GNGKSATGNSILG   45 (231)
Q Consensus        24 ~~i~lvG~~-g~GKSTLin~l~g   45 (231)
                      .++-+.|.. |+||||+--.|+.
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~   24 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQ   24 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHHH
Confidence            578899995 9999998866653

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=80.27  E-value=0.71  Score=31.15  Aligned_cols=20  Identities=20%  Similarity=0.134  Sum_probs=16.1

Q ss_pred             eEEEEEcCCCCCHHH-HHHHH
Q 038053           24 RTVVLLGRTGNGKSA-TGNSI   43 (231)
Q Consensus        24 ~~i~lvG~~g~GKST-Lin~l   43 (231)
                      ..-.++||=.||||| |++.+
T Consensus         3 ~L~~i~GpMfsGKTteLi~~~   23 (139)
T d2b8ta1           3 WIEFITGPMFAGKTAELIRRL   23 (139)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEEEccccCHHHHHHHHHH
Confidence            556789999999999 55654